Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 149 of 221
Found at i:45306713 original size:64 final size:66
Alignment explanation
Indices: 45306574--45306702 Score: 203
Period size: 64 Copynumber: 2.0 Consensus size: 66
45306564 AATAAAATAT
45306574 AAAAATATGTGGAATATTAAAATTGACTATTAAATAAATGTTATTTTATTAAATATATTTAATTA
1 AAAAATATGTGGAATATTAAAATTGACTATTAAATAAATGTTATTTTATTAAATATATTTAATTA
45306639 A
66 A
*
45306640 AAAAATATGTGGAATA-T-AAATTGACTATTAAA-ATAATGTTATTTTATTATAT-TATTATAAT
1 AAAAATATGTGGAATATTAAAATTGACTATTAAATA-AATGTTATTTTATTAAATATATT-TAAT
45306701 TA
64 TA
45306703 TATTAGTATG
Statistics
Matches: 60, Mismatches: 1, Indels: 6
0.90 0.01 0.09
Matches are distributed among these distances:
63 5 0.08
64 38 0.63
65 1 0.02
66 16 0.27
ACGTcount: A:0.47, C:0.02, G:0.08, T:0.43
Consensus pattern (66 bp):
AAAAATATGTGGAATATTAAAATTGACTATTAAATAAATGTTATTTTATTAAATATATTTAATTA
A
Found at i:45306872 original size:41 final size:38
Alignment explanation
Indices: 45306825--45306999 Score: 120
Period size: 39 Copynumber: 4.6 Consensus size: 38
45306815 ACATTTACTT
45306825 ACTTACATAATACATTAAACTTAACAATAC-TATAACTTAC
1 ACTTACATAATA-ATT-AACTT-ACAATACATATAACTTAC
* * *
45306865 ACATTACATAATAATTTACTTATAATACATTTAACTTAC
1 AC-TTACATAATAATTAACTTACAATACATATAACTTAC
* *
45306904 ACTTACACAATAA-TAA--T--AAT---TACAACTTAC
1 ACTTACATAATAATTAACTTACAATACATATAACTTAC
* *
45306934 A-TAATACATAATAATT-ACATATAATACATAATAACTTAC
1 ACT--TACATAATAATTAACTTACAATACAT-ATAACTTAC
45306973 AACTTACATAATACATTTAACTTACAA
1 -ACTTACATAATA-A-TTAACTTACAA
45307000 CTTACACAAT
Statistics
Matches: 106, Mismatches: 11, Indels: 34
0.70 0.07 0.23
Matches are distributed among these distances:
29 1 0.01
30 9 0.08
31 10 0.09
32 1 0.01
33 4 0.04
35 4 0.04
37 2 0.02
38 17 0.16
39 32 0.30
40 7 0.07
41 13 0.12
42 6 0.06
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (38 bp):
ACTTACATAATAATTAACTTACAATACATATAACTTAC
Found at i:45306945 original size:25 final size:25
Alignment explanation
Indices: 45306886--45307056 Score: 207
Period size: 25 Copynumber: 7.1 Consensus size: 25
45306876 TAATTTACTT
*
45306886 ATAATACATTTAACTTAC-ACTTAC
1 ATAATACATATAACTTACAACTTAC
*
45306910 ACAATA-ATAATAA-TTACAACTTAC
1 ATAATACAT-ATAACTTACAACTTAC
45306934 ATAATACATAATAA-TTAC-A--T--
1 ATAATACAT-ATAACTTACAACTTAC
45306954 ATAATACATAATAACTTACAACTTAC
1 ATAATACAT-ATAACTTACAACTTAC
*
45306980 ATAATACATTTAACTTACAACTTAC
1 ATAATACATATAACTTACAACTTAC
* *
45307005 ACAATACATTTAACTTACAACTTAC
1 ATAATACATATAACTTACAACTTAC
45307030 ATAATACATATAACTTACAACTTAC
1 ATAATACATATAACTTACAACTTAC
45307055 AT
1 AT
45307057 TTAACTTACA
Statistics
Matches: 131, Mismatches: 7, Indels: 17
0.85 0.05 0.11
Matches are distributed among these distances:
20 14 0.11
21 4 0.03
22 2 0.02
23 6 0.05
24 21 0.16
25 75 0.57
26 9 0.07
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (25 bp):
ATAATACATATAACTTACAACTTAC
Found at i:45306957 original size:10 final size:10
Alignment explanation
Indices: 45306934--45306967 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
45306924 TACAACTTAC
45306934 ATAATACATA
1 ATAATACATA
45306944 ATAATTACAT-
1 ATAA-TACATA
45306954 ATAATACATA
1 ATAATACATA
45306964 ATAA
1 ATAA
45306968 CTTACAACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 5 0.23
10 12 0.55
11 5 0.23
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.32
Consensus pattern (10 bp):
ATAATACATA
Found at i:45306959 original size:20 final size:21
Alignment explanation
Indices: 45306934--45306973 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
45306924 TACAACTTAC
45306934 ATAATACATAATAA-TTACAT
1 ATAATACATAATAACTTACAT
45306954 ATAATACATAATAACTTACA
1 ATAATACATAATAACTTACA
45306974 ACTTACATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (21 bp):
ATAATACATAATAACTTACAT
Found at i:45307030 original size:18 final size:18
Alignment explanation
Indices: 45307009--45307066 Score: 53
Period size: 25 Copynumber: 2.8 Consensus size: 18
45306999 ACTTACACAA
45307009 TACATTTAACTTACAACT
1 TACATTTAACTTACAACT
45307027 TACATAATACATATAACTTACAACT
1 TACAT--T---T--AACTTACAACT
45307052 TACATTTAACTTACA
1 TACATTTAACTTACA
45307067 TAATACATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 14
0.70 0.00 0.30
Matches are distributed among these distances:
18 13 0.39
20 2 0.06
23 2 0.06
25 16 0.48
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.36
Consensus pattern (18 bp):
TACATTTAACTTACAACT
Found at i:45307073 original size:18 final size:18
Alignment explanation
Indices: 45307023--45307085 Score: 78
Period size: 18 Copynumber: 3.6 Consensus size: 18
45307013 TTTAACTTAC
*
45307023 AACTTACATAATACATAT
1 AACTTACATAATACATTT
*
45307041 AACTTACA-ACTTACATTT
1 AACTTACATA-ATACATTT
45307059 AACTTACATAATACATTT
1 AACTTACATAATACATTT
45307077 --CTTACATAA
1 AACTTACATAA
45307086 CTTACATAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
16 9 0.22
17 1 0.03
18 29 0.73
19 1 0.03
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.37
Consensus pattern (18 bp):
AACTTACATAATACATTT
Found at i:45307073 original size:25 final size:24
Alignment explanation
Indices: 45307045--45307094 Score: 57
Period size: 25 Copynumber: 2.0 Consensus size: 24
45307035 ACATATAACT
45307045 TACA-ACTTACATTTAACTTACATAA
1 TACATACTTACA--TAACTTACATAA
*
45307070 TACATTTCTTACATAACTTACATAA
1 TACA-TACTTACATAACTTACATAA
45307095 CTTACCATTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
25 16 0.73
27 6 0.27
ACGTcount: A:0.42, C:0.20, G:0.00, T:0.38
Consensus pattern (24 bp):
TACATACTTACATAACTTACATAA
Found at i:45307074 original size:43 final size:43
Alignment explanation
Indices: 45306973--45307074 Score: 111
Period size: 43 Copynumber: 2.4 Consensus size: 43
45306963 AATAACTTAC
* *
45306973 AACTTACATAATACATTTAACTTACAACTTACACAATACATTT
1 AACTTACATAATACATATAACATACAACTTACACAATACATTT
* * *
45307016 AACTTACA-ACTTACATA-ATACATATAACTTACA-ACTTACATTT
1 AACTTACATA-ATACATATA-ACATACAACTTACACA-ATACATTT
45307059 AACTTACATAATACAT
1 AACTTACATAATACAT
45307075 TTCTTACATA
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
42 3 0.06
43 45 0.92
44 1 0.02
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.34
Consensus pattern (43 bp):
AACTTACATAATACATATAACATACAACTTACACAATACATTT
Found at i:45307086 original size:43 final size:44
Alignment explanation
Indices: 45306973--45307091 Score: 108
Period size: 43 Copynumber: 2.8 Consensus size: 44
45306963 AATAACTTAC
45306973 AACTTACATAATACATTTAACTTAC--AACTTAC-ACAATACATTT
1 AACTTACATAATACATTT--CTTACATAACTTACAACAATACATTT
* * * *
45307016 AACTTACA-ACTTACATAATAC--ATATAACTTACAAC-TTACATTT
1 AACTTACATA-ATACAT--TTCTTACATAACTTACAACAATACATTT
45307059 AACTTACATAATACATTTCTTACATAACTTACA
1 AACTTACATAATACATTTCTTACATAACTTACA
45307092 TAACTTACCA
Statistics
Matches: 60, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
41 3 0.05
42 1 0.02
43 52 0.87
44 3 0.05
45 1 0.02
ACGTcount: A:0.44, C:0.21, G:0.00, T:0.35
Consensus pattern (44 bp):
AACTTACATAATACATTTCTTACATAACTTACAACAATACATTT
Found at i:45307088 original size:36 final size:34
Alignment explanation
Indices: 45307016--45307099 Score: 95
Period size: 36 Copynumber: 2.5 Consensus size: 34
45307006 CAATACATTT
45307016 AACTTAC--AACTTACATAATACATATAACTTAC
1 AACTTACATAACTTACATAATACATATAACTTAC
*
45307048 AACTTACATTTAACTTACATAATACAT-T-TCTTAC
1 AACTTACA--TAACTTACATAATACATATAACTTAC
45307082 ATAACTTACATAACTTAC
1 --AACTTACATAACTTAC
45307100 CATTGCATTT
Statistics
Matches: 45, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
32 7 0.16
34 13 0.29
35 1 0.02
36 24 0.53
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.36
Consensus pattern (34 bp):
AACTTACATAACTTACATAATACATATAACTTAC
Found at i:45307091 original size:18 final size:19
Alignment explanation
Indices: 45307024--45307092 Score: 62
Period size: 18 Copynumber: 3.9 Consensus size: 19
45307014 TTAACTTACA
*
45307024 ACTTACATAA--TACATATA
1 ACTTACATAACTTACAT-TT
45307042 ACTTAC--AACTTACATTT
1 ACTTACATAACTTACATTT
45307059 AACTTACATAA--TACATTT
1 -ACTTACATAACTTACATTT
45307077 -CTTACATAACTTACAT
1 ACTTACATAACTTACAT
45307093 AACTTACCAT
Statistics
Matches: 43, Mismatches: 1, Indels: 14
0.74 0.02 0.24
Matches are distributed among these distances:
16 11 0.26
17 1 0.02
18 29 0.67
20 2 0.05
ACGTcount: A:0.42, C:0.20, G:0.00, T:0.38
Consensus pattern (19 bp):
ACTTACATAACTTACATTT
Found at i:45307098 original size:18 final size:18
Alignment explanation
Indices: 45306964--45307099 Score: 61
Period size: 18 Copynumber: 8.0 Consensus size: 18
45306954 ATAATACATA
45306964 ATAACTTAC--AACTTAC
1 ATAACTTACATAACTTAC
45306980 ATAA--TACATTTAACTTAC
1 ATAACTTACA--TAACTTAC
*
45306998 --AACTTACACAA--TAC
1 ATAACTTACATAACTTAC
45307012 ATTTAACTTAC--AACTTAC
1 A--TAACTTACATAACTTAC
45307030 ATAA--TACATATAACTTAC
1 ATAACTTAC--ATAACTTAC
45307048 --AACTTACATTTAACTTAC
1 ATAACTTACA--TAACTTAC
**
45307066 ATAA--TACATTTCTTAC
1 ATAACTTACATAACTTAC
45307082 ATAACTTACATAACTTAC
1 ATAACTTACATAACTTAC
45307100 CATTGCATTT
Statistics
Matches: 91, Mismatches: 5, Indels: 46
0.64 0.04 0.32
Matches are distributed among these distances:
14 9 0.10
16 26 0.29
18 54 0.59
20 2 0.02
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.35
Consensus pattern (18 bp):
ATAACTTACATAACTTAC
Found at i:45312499 original size:21 final size:21
Alignment explanation
Indices: 45312473--45312543 Score: 97
Period size: 21 Copynumber: 3.4 Consensus size: 21
45312463 CTACAACTTA
* *
45312473 AAGCAGAGGCGGAAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
*
45312494 AAGCAGCGGCTGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* *
45312515 AAGCGGAGGCTGCAGCGAGAG
1 AAGCAGAGGCTGCAGCGAGGG
45312536 AAGCAGAG
1 AAGCAGAG
45312544 CAGAGCAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.31, C:0.18, G:0.48, T:0.03
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGGG
Found at i:45312916 original size:41 final size:41
Alignment explanation
Indices: 45312856--45313025 Score: 187
Period size: 42 Copynumber: 4.1 Consensus size: 41
45312846 TAGTGGCGTT
* *
45312856 TTTGTATAAAAGCGCCACTAAAGAACATGTTCTTTCGCGGCG
1 TTTGTA-AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCG
* *
45312898 TTTGTAAAAAATGCCACTAAAGAACATGTTATTTAGCGGCG
1 TTTGTAAAAAACGCCACTAAAGAACATGTTCTTTAGCGGCG
* * * *
45312939 CTTAGAAAAAAACGCCGCTAAAGAACATGATCTTTAGCGGCG
1 -TTTGTAAAAAACGCCACTAAAGAACATGTTCTTTAGCGGCG
* *** * *
45312981 TTTTTCCTTAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCG
1 TTTGT-AAAAAACGCCACTAAAGAACATGTTCTTTAGCGGCG
45313023 TTT
1 TTT
45313026 TTATTTGTAA
Statistics
Matches: 108, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
41 33 0.31
42 75 0.69
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (41 bp):
TTTGTAAAAAACGCCACTAAAGAACATGTTCTTTAGCGGCG
Found at i:45315042 original size:46 final size:46
Alignment explanation
Indices: 45314991--45315085 Score: 163
Period size: 46 Copynumber: 2.1 Consensus size: 46
45314981 ACAAAGATAG
*
45314991 AAACCAAAAAATTATCTCCTAAATTTTAACATCTAATCTCCTAATT
1 AAACCAAAAAATTATCTCCTAAACTTTAACATCTAATCTCCTAATT
* *
45315037 AAACCAAAACATTATCTCCTAAACTTTAGCATCTAATCTCCTAATT
1 AAACCAAAAAATTATCTCCTAAACTTTAACATCTAATCTCCTAATT
45315083 AAA
1 AAA
45315086 AGAAAAGAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.43, C:0.23, G:0.01, T:0.33
Consensus pattern (46 bp):
AAACCAAAAAATTATCTCCTAAACTTTAACATCTAATCTCCTAATT
Found at i:45325398 original size:68 final size:71
Alignment explanation
Indices: 45325325--45325462 Score: 203
Period size: 68 Copynumber: 2.0 Consensus size: 71
45325315 TTTAATAGAT
*
45325325 TTAATATTAAATTTAATTTAATACTTATCTTAATAG-T-AT-TT-TATTAATTTAATATTAAAGT
1 TTAATATTAAATTAAATTTAATACTTATCTT-ATAGATAATATTCTATTAATTTAATATTAAAGT
45325386 GATTATC
65 GATTATC
* *
45325393 TTAATATTAAATTAAATTTAATATTTATCTTATAGATAAATATTCTATTAATTTACTATTAAAGT
1 TTAATATTAAATTAAATTTAATACTTATCTTATAGAT-AATATTCTATTAATTTAATATTAAAGT
45325458 GATTA
65 GATTA
45325463 AATTTAATCA
Statistics
Matches: 62, Mismatches: 3, Indels: 6
0.87 0.04 0.08
Matches are distributed among these distances:
67 4 0.06
68 30 0.48
70 2 0.03
71 2 0.03
72 24 0.39
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.50
Consensus pattern (71 bp):
TTAATATTAAATTAAATTTAATACTTATCTTATAGATAATATTCTATTAATTTAATATTAAAGTG
ATTATC
Found at i:45330109 original size:294 final size:294
Alignment explanation
Indices: 45329579--45330744 Score: 1694
Period size: 294 Copynumber: 4.0 Consensus size: 294
45329569 CTCACGACGT
* *
45329579 TTCTGAAAACATCGTTGTTAGCACCATTGGCATA-GTACCATGACGCTTTGGAAAAAGCATTAGC
1 TTCTGAAAACATCGTTGTTAGCACCATTGGCATAGGTACCATGACGCTTTGGAAAAAGCGTCAGC
* * *
45329643 ATAATTCAACCTAAGTCAACCTTTATTCAAGGGTTGGTAAAAACCTAGTCAAGGTCGACGTTTTA
66 ATAATTCAACCTAGGTCAACCTTTATTCAAGGGTTGGTAAAGACCTAGTCAAGGTCAACG-TTTA
* * *
45329708 AAAAGGTTGGGATAGGAGGAATT-AGACGATCGAAAAAAGTCGAAATAAAGCATTCATATGCCAA
130 AAAAAGTTGGGATAGGAGGAATTAAG-CGACCGAAAAAAGTCG-AATAAAGCATTCATATGCCGA
45329772 CTTATAAAGAGTTGGTTCATGCCCCCGTCAAAGGCT-ACATAAAATAGTCGAGTTAGGTCGCACT
193 CTTATAAAGAGTTGGTTCATGCCCCCGTCAAAGG-TGACATAAAATAGTCGAGTTAGGTCGCACT
45329836 TAGTCAGACTTTTAAAGAGTTGGCACATGTGTCGACAC
257 TAGTCAGACTTTTAAAGAGTTGGCACATGTGTCGACAC
* *
45329874 TTCTG-AAACATCGTTGTTAGCACCATTGGCATAGGTGCCATGACGCTTTGGAAAAAGCGTCGGC
1 TTCTGAAAACATCGTTGTTAGCACCATTGGCATAGGTACCATGACGCTTTGGAAAAAGCGTCAGC
45329938 ATAATTCAACCTAGGTCAACCTTTATTCAAGGGTTGGTAAAGACCTAGTCAAGGTCAACGTTTAA
66 ATAATTCAACCTAGGTCAACCTTTATTCAAGGGTTGGTAAAGACCTAGTCAAGGTCAACGTTTAA
*
45330003 AAAAGTTGGGATAGGAGGAATTAAGCGACCCAAAAAAGTCAGAATAAAGCATTCATATGCCGACT
131 AAAAGTTGGGATAGGAGGAATTAAGCGACCGAAAAAAGTC-GAATAAAGCATTCATATGCCGACT
* * *
45330068 TATAAAGAATTGGTTCATGCCCCCTTCAAAGGTGACATAAAATAGTTGAGTTAGGTCGCACTTAG
195 TATAAAGAGTTGGTTCATGCCCCCGTCAAAGGTGACATAAAATAGTCGAGTTAGGTCGCACTTAG
* * *
45330133 TC-CA-TCTTTAAAGAGTTGGCACATGCGTCGACGC
260 TCAGACT-TTTAAAGAGTTGGCACATGTGTCGACAC
*
45330167 TTCTGAAAACATCATTGTTAGCACCATTGGCATAGGTACCATGACGCTTTGGAAAAAGC-TCAGC
1 TTCTGAAAACATCGTTGTTAGCACCATTGGCATAGGTACCATGACGCTTTGGAAAAAGCGTCAGC
* *
45330231 ATAATTCAACCTAGGTCAACCTTTATTCAAGGGTTGGTAAAGACCTAGTCAAGGTCGACATTTAA
66 ATAATTCAACCTAGGTCAACCTTTATTCAAGGGTTGGTAAAGACCTAGTCAAGGTCAACGTTTAA
* * * * * * *
45330296 AACAGGTGAGATAGGAGGAATTAGGCGATCGAAAAAA-TCG--GAAA-CATTCATATACCGACTT
131 AAAAGTTGGGATAGGAGGAATTAAGCGACCGAAAAAAGTCGAATAAAGCATTCATATGCCGACTT
* * *
45330357 ATAAAGAGTTGGTTCATTCCCCAGTCAAAGG-GACAAAAAATAGTCGAGTTAGGTCGCACTTAGT
196 ATAAAGAGTTGGTTCATGCCCCCGTCAAAGGTGACATAAAATAGTCGAGTTAGGTCGCACTTAGT
* * *
45330421 CCA-ACTTTTAAAGAATTGGCACATGTGTCAACTC
261 -CAGACTTTTAAAGAGTTGGCACATGTGTCGACAC
* * * *
45330455 TTCTGAAAACATCGTTGTTAGCACCATTAGCATAGGTACCATAACACTTTGGAAAAAGCGTCGGC
1 TTCTGAAAACATCGTTGTTAGCACCATTGGCATAGGTACCATGACGCTTTGGAAAAAGCGTCAGC
* *
45330520 ATAATTCAACCAAGGTCAACCTTTATTTAAGGGTTGGTAAAGACCTAGTCAAGGTCAACGTTTAA
66 ATAATTCAACCTAGGTCAACCTTTATTCAAGGGTTGGTAAAGACCTAGTCAAGGTCAACGTTTAA
* * * * ** * *
45330585 AAAGGTT-GCATAGGAGGAATTAGGAGACAAAAAAAAGTCAGAATAAAGAATTCATATGTCGACT
131 AAAAGTTGGGATAGGAGGAATTAAGCGACCGAAAAAAGTC-GAATAAAGCATTCATATGCCGACT
* * *
45330649 TATAAAGAGTTGGTTCATGCCCTCGTCAAAGGAGACATAAAAATAGTCGAGTTAGGTCACACTTA
195 TATAAAGAGTTGGTTCATGCCCCCGTCAAAGGTGACAT-AAAATAGTCGAGTTAGGTCGCACTTA
*
45330714 GTCTGACTTTTAAAGAGTTGGCACATGTGTC
259 GTCAGACTTTTAAAGAGTTGGCACATGTGTC
45330745 AACCAAAGCC
Statistics
Matches: 784, Mismatches: 69, Indels: 36
0.88 0.08 0.04
Matches are distributed among these distances:
287 31 0.04
288 147 0.19
289 75 0.10
290 1 0.00
291 1 0.00
292 6 0.01
293 173 0.22
294 207 0.26
295 143 0.18
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (294 bp):
TTCTGAAAACATCGTTGTTAGCACCATTGGCATAGGTACCATGACGCTTTGGAAAAAGCGTCAGC
ATAATTCAACCTAGGTCAACCTTTATTCAAGGGTTGGTAAAGACCTAGTCAAGGTCAACGTTTAA
AAAAGTTGGGATAGGAGGAATTAAGCGACCGAAAAAAGTCGAATAAAGCATTCATATGCCGACTT
ATAAAGAGTTGGTTCATGCCCCCGTCAAAGGTGACATAAAATAGTCGAGTTAGGTCGCACTTAGT
CAGACTTTTAAAGAGTTGGCACATGTGTCGACAC
Found at i:45330694 original size:582 final size:587
Alignment explanation
Indices: 45329573--45330740 Score: 1836
Period size: 582 Copynumber: 2.0 Consensus size: 587
45329563 ACGATTCTCA
* *
45329573 CGACGTTTCTGAAAACATCGTTGTTAGCACCATTGGCATAGTACCATGACGCTTTGGAAAAAGCA
1 CGACGCTTCTGAAAACATCATTGTTAGCACCATTGGCATAGTACCATGACGCTTTGGAAAAAGCA
*
45329638 TTAGCATAATTCAACCTAAGTCAACCTTTATTCAAGGGTTGGTAAAAACCTAGTCAAGGTCGACG
66 TCAGCATAATTCAACCTAAGTCAACCTTTATTCAAGGGTTGGTAAAAACCTAGTCAAGGTCGACG
* * * *
45329703 TTTTAAAAAGGTTGGGATAGGAGGAATTAGACGATCGAAAAAAGTCGAAATAAAGCATTCATATG
131 ATTTAAAAAGGTTGAGATAGGAGGAATTAGACGATCGAAAAAAGTCG--AGAAAGCATTCATATA
* * *
45329768 CCAACTTATAAAGAGTTGGTTCATGCCCCCGTCAAAGGCTACATAAAATAGTCGAGTTAGGTCGC
194 CCAACTTATAAAGAGTTGGTTCATGCCCCAGTCAAAGGCGACAAAAAATAGTCGAGTTAGGTCGC
* *
45329833 ACTTAGTCAGACTTTTAAAGAGTTGGCACATGTGTCGACACTTCTGAAACATCGTTGTTAGCACC
259 ACTTAGTCAGACTTTTAAAGAATTGGCACATGTGTCAACACTTCTGAAACATCGTTGTTAGCACC
* * * * *
45329898 ATTGGCATAGGTGCCATGACGCTTTGGAAAAAGCGTCGGCATAATTCAACCTAGGTCAACCTTTA
324 ATTAGCATAGGTACCATAACACTTTGGAAAAAGCGTCGGCATAATTCAACCAAGGTCAACCTTTA
*
45329963 TTCAAGGGTTGGTAAAGACCTAGTCAAGGTCAACGTTTAAAAAAGTTGGGATAGGAGGAATTAAG
389 TTCAAGGGTTGGTAAAGACCTAGTCAAGGTCAACGTTTAAAAAAGTTGGCATAGGAGGAATTAAG
* ** * *
45330028 CGACCCAAAAAAGTCAGAATAAAGCATTCATATGCCGACTTATAAAGAATTGGTTCATGCCCCCT
454 AGACAAAAAAAAGTCAGAATAAAGAATTCATATGCCGACTTATAAAGAATTGGTTCATGCCCCCG
* * *
45330093 TCAAAGGTGACATAAAATAGTTGAGTTAGGTCGCACTTAGTC-CA-TCTTTAAAGAGTTGGCACA
519 TCAAAGGAGACATAAAATAGTCGAGTTAGGTCACACTTAGTCTCACT-TTTAAAGAGTTGGCACA
45330156 TGCGT
583 TGCGT
45330161 CGACGCTTCTGAAAACATCATTGTTAGCACCATTGGCATAGGTACCATGACGCTTTGGAAAAAGC
1 CGACGCTTCTGAAAACATCATTGTTAGCACCATTGGCATA-GTACCATGACGCTTTGGAAAAAGC
* *
45330226 -TCAGCATAATTCAACCTAGGTCAACCTTTATTCAAGGGTTGGTAAAGACCTAGTCAAGGTCGAC
65 ATCAGCATAATTCAACCTAAGTCAACCTTTATTCAAGGGTTGGTAAAAACCTAGTCAAGGTCGAC
*
45330290 -ATTTAAAACAGG-TGAGATAGGAGGAATTAGGCGATCGAAAAAA-TCG-GAAA-CATTCATATA
130 GATTTAAAA-AGGTTGAGATAGGAGGAATTAGACGATCGAAAAAAGTCGAGAAAGCATTCATATA
* *
45330350 CCGACTTATAAAGAGTTGGTTCATTCCCCAGTCAAAGG-GACAAAAAATAGTCGAGTTAGGTCGC
194 CCAACTTATAAAGAGTTGGTTCATGCCCCAGTCAAAGGCGACAAAAAATAGTCGAGTTAGGTCGC
*
45330414 ACTTAGTCCA-ACTTTTAAAGAATTGGCACATGTGTCAACTCTTCTGAAAACATCGTTGTTAGCA
259 ACTTAGT-CAGACTTTTAAAGAATTGGCACATGTGTCAACACTTCTG-AAACATCGTTGTTAGCA
45330478 CCATTAGCATAGGTACCATAACACTTTGGAAAAAGCGTCGGCATAATTCAACCAAGGTCAACCTT
322 CCATTAGCATAGGTACCATAACACTTTGGAAAAAGCGTCGGCATAATTCAACCAAGGTCAACCTT
* *
45330543 TATTTAAGGGTTGGTAAAGACCTAGTCAAGGTCAACGTTTAAAAAGGTT-GCATAGGAGGAATTA
387 TATTCAAGGGTTGGTAAAGACCTAGTCAAGGTCAACGTTTAAAAAAGTTGGCATAGGAGGAATTA
* * * *
45330607 GGAGACAAAAAAAAGTCAGAATAAAGAATTCATATGTCGACTTATAAAGAGTTGGTTCATGCCCT
452 AGAGACAAAAAAAAGTCAGAATAAAGAATTCATATGCCGACTTATAAAGAATTGGTTCATGCCCC
*
45330672 CGTCAAAGGAGACATAAAAATAGTCGAGTTAGGTCACACTTAGTCTGACTTTTAAAGAGTTGGCA
517 CGTCAAAGGAGACAT-AAAATAGTCGAGTTAGGTCACACTTAGTCTCACTTTTAAAGAGTTGGCA
45330737 CATG
581 CATG
45330741 TGTCAACCAA
Statistics
Matches: 534, Mismatches: 39, Indels: 19
0.90 0.07 0.03
Matches are distributed among these distances:
581 148 0.28
582 197 0.37
583 23 0.04
584 1 0.00
586 3 0.01
587 36 0.07
588 102 0.19
589 24 0.04
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (587 bp):
CGACGCTTCTGAAAACATCATTGTTAGCACCATTGGCATAGTACCATGACGCTTTGGAAAAAGCA
TCAGCATAATTCAACCTAAGTCAACCTTTATTCAAGGGTTGGTAAAAACCTAGTCAAGGTCGACG
ATTTAAAAAGGTTGAGATAGGAGGAATTAGACGATCGAAAAAAGTCGAGAAAGCATTCATATACC
AACTTATAAAGAGTTGGTTCATGCCCCAGTCAAAGGCGACAAAAAATAGTCGAGTTAGGTCGCAC
TTAGTCAGACTTTTAAAGAATTGGCACATGTGTCAACACTTCTGAAACATCGTTGTTAGCACCAT
TAGCATAGGTACCATAACACTTTGGAAAAAGCGTCGGCATAATTCAACCAAGGTCAACCTTTATT
CAAGGGTTGGTAAAGACCTAGTCAAGGTCAACGTTTAAAAAAGTTGGCATAGGAGGAATTAAGAG
ACAAAAAAAAGTCAGAATAAAGAATTCATATGCCGACTTATAAAGAATTGGTTCATGCCCCCGTC
AAAGGAGACATAAAATAGTCGAGTTAGGTCACACTTAGTCTCACTTTTAAAGAGTTGGCACATGC
GT
Found at i:45347594 original size:40 final size:40
Alignment explanation
Indices: 45347543--45347659 Score: 207
Period size: 40 Copynumber: 2.9 Consensus size: 40
45347533 CGTTTGGAGC
* **
45347543 AAAAGCGCCGCTAAAGAGTGAGCATTAGCGGCGTTTAATT
1 AAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTAAGG
45347583 AAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTAAGG
1 AAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTAAGG
45347623 AAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTA
1 AAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTA
45347660 TAGATAACGC
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 74 1.00
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.21
Consensus pattern (40 bp):
AAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTAAGG
Found at i:45347997 original size:111 final size:111
Alignment explanation
Indices: 45347607--45348530 Score: 1596
Period size: 112 Copynumber: 8.3 Consensus size: 111
45347597 AGAGTGAGCA
** * *
45347607 TTAGTGGCGTTTAAGGAAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAAATAACGCCG
45347672 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGAC
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTT-GGGGGGAC
45347719 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAAATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAAATAACGCCG
45347784 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGAC
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTT-GGGGGGAC
* *
45347831 TTAGTGGCGTTTATTGTAAAGCACCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAAATAACGCCG
45347896 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGAC
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGAC
*
45347942 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAAATAACGCCG
45348007 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGAC
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGAC
*
45348053 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGCGGCGTTTATAAATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAAATAACGCCG
45348118 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGAGGAC
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGG-GGAC
* *
45348165 TTAGTGGCGTTTATTGCAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAAATAACGCCG
*
45348230 CAAATAATACACCCAGACGGTGCTGTTTTGTGGCCTTTGGGGGGAC
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGAC
45348276 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAAATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAAATAACGCCG
45348341 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGAGGGGAC
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGG-GGGGAC
* ** * * *
45348388 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGCTTATAAAAAAATGCC
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTAT-AAATAACGCC
* * *
45348453 GCAAATAATACTCCCAGACGGTGCCGTTTTGTGTCCTTTGGGGGGGC
65 GCAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGAC
* *
45348500 ATTAGTGGCATTTTTTGTAAAGCGCCGCTAA
1 -TTAGTGGCGTTTATTGTAAAGCGCCGCTAA
45348531 TCTAGGTGTT
Statistics
Matches: 781, Mismatches: 27, Indels: 7
0.96 0.03 0.01
Matches are distributed among these distances:
111 329 0.42
112 377 0.48
113 75 0.10
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (111 bp):
TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAAATAACGCCG
CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGAC
Found at i:45348033 original size:223 final size:222
Alignment explanation
Indices: 45347607--45348530 Score: 1596
Period size: 223 Copynumber: 4.1 Consensus size: 222
45347597 AGAGTGAGCA
** * *
45347607 TTAGTGGCGTTTAAGGAAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAAATAACGCCG
45347672 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGACTTAGTGGCGTTTATTGTA
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTT-GGGGGGACTTAGTGGCGTTTATTGTA
45347737 AAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAAATAACGCCGCAAATAATACACCCAGAC
130 AAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAAATAACGCCGCAAATAATACACCCAGAC
45347802 GGTGCCGTTTTGTGGCCTTTGGGGGGGAC
195 GGTGCCGTTTTGTGGCCTTT-GGGGGGAC
* *
45347831 TTAGTGGCGTTTATTGTAAAGCACCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAAATAACGCCG
45347896 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGACTTAGTGGCGTTTATTGTAA
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGACTTAGTGGCGTTTATTGTAA
*
45347961 AGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCGCAAATAATACACCCAGACG
131 AGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAAATAACGCCGCAAATAATACACCCAGACG
45348026 GTGCCGTTTTGTGGCCTTTGGGGGGAC
196 GTGCCGTTTTGTGGCCTTTGGGGGGAC
*
45348053 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGCGGCGTTTATAAATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAAATAACGCCG
*
45348118 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGAGGACTTAGTGGCGTTTATTGCA
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGG-GGACTTAGTGGCGTTTATTGTA
*
45348183 AAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCGCAAATAATACACCCAGAC
130 AAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAAATAACGCCGCAAATAATACACCCAGAC
*
45348248 GGTGCTGTTTTGTGGCCTTTGGGGGGAC
195 GGTGCCGTTTTGTGGCCTTTGGGGGGAC
45348276 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAAATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAAATAACGCCG
45348341 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGAGGGGACTTAGTGGCGTTTATTGTA
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGG-GGGGACTTAGTGGCGTTTATTGTA
* ** * * * *
45348406 AAGCGCCGCTAAAGAGTGAACATTAGCAGCGCTTATAAAAAAATGCCGCAAATAATACTCCCAGA
130 AAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTAT-AAATAACGCCGCAAATAATACACCCAGA
* *
45348471 CGGTGCCGTTTTGTGTCCTTTGGGGGGGC
194 CGGTGCCGTTTTGTGGCCTTTGGGGGGAC
* *
45348500 ATTAGTGGCATTTTTTGTAAAGCGCCGCTAA
1 -TTAGTGGCGTTTATTGTAAAGCGCCGCTAA
45348531 TCTAGGTGTT
Statistics
Matches: 671, Mismatches: 25, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
222 112 0.17
223 380 0.57
224 151 0.23
225 28 0.04
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (222 bp):
TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAAATAACGCCG
CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGACTTAGTGGCGTTTATTGTAA
AGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAAATAACGCCGCAAATAATACACCCAGACG
GTGCCGTTTTGTGGCCTTTGGGGGGAC
Found at i:45350295 original size:84 final size:84
Alignment explanation
Indices: 45350204--45350404 Score: 341
Period size: 84 Copynumber: 2.4 Consensus size: 84
45350194 TAGTTAAACT
** *
45350204 TTTAGTGGCGTTTTTAGGAAAATGCCACAAATAATGCAATTCCAGACCACGAAAACGGTGTCGTT
1 TTTAGTGGCGTTTTTACAAAAATGCCACAAAAAATGCAATTCCAGACCACGAAAACGGTGTCGTT
45350269 TCTGTTCACAGCTGTAATA
66 TCTGTTCACAGCTGTAATA
*
45350288 TTTAGTGGCGTTTTT-CTAAAAACGCCACAAAAAATGCAATTCCAGACCACGAAAACGGTGTCGT
1 TTTAGTGGCGTTTTTAC-AAAAATGCCACAAAAAATGCAATTCCAGACCACGAAAACGGTGTCGT
45350352 TTCTGTTCACAGCTGTAATA
65 TTCTGTTCACAGCTGTAATA
45350372 TTTAGTGGCGTTTTTACCAAAAATGCCACAAAA
1 TTTAGTGGCGTTTTTA-CAAAAATGCCACAAAA
45350405 CGGTGTTAAT
Statistics
Matches: 109, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
84 94 0.86
85 14 0.13
86 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.29
Consensus pattern (84 bp):
TTTAGTGGCGTTTTTACAAAAATGCCACAAAAAATGCAATTCCAGACCACGAAAACGGTGTCGTT
TCTGTTCACAGCTGTAATA
Found at i:45351626 original size:11 final size:11
Alignment explanation
Indices: 45351606--45351634 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
45351596 GAATATCTCA
45351606 AACT-ATGGGT
1 AACTAATGGGT
45351616 AACTAATGGGT
1 AACTAATGGGT
45351627 AACTAATG
1 AACTAATG
45351635 TATTATCATC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.38, C:0.10, G:0.24, T:0.28
Consensus pattern (11 bp):
AACTAATGGGT
Found at i:45352996 original size:17 final size:17
Alignment explanation
Indices: 45352974--45353295 Score: 149
Period size: 17 Copynumber: 18.6 Consensus size: 17
45352964 GTTAAATTTA
45352974 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
*
45352991 TTACTAAAATAAATTAC
1 TTACTAAAATACATTAC
*
45353008 TTACTAAAATTTAAATTTA-
1 TTACTAAAA--TACA-TTAC
45353027 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
* *
45353044 TTACATAAATTTGTTTAAATTTA-
1 TTAC-TAAA-----ATACA-TTAC
*
45353067 TTTCTAAAATACATTAC
1 TTACTAAAATACATTAC
*
45353084 TTACTAAAATTTGTTTAAATTTA-
1 TTACTAAAA------TACA-TTAC
45353107 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
45353124 TTACTAAAAT---TT--
1 TTACTAAAATACATTAC
* ** *
45353136 GTA-T-AAATTTATTAA
1 TTACTAAAATACATTAC
*
45353151 TTACTTAAATACATTAC
1 TTACTAAAATACATTAC
45353168 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
*
45353185 TTACTAAAATTTGTTTAAATTTA-
1 TTACTAAAA------TACA-TTAC
45353208 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
*
45353225 TTACTAAAAT---TT-G
1 TTACTAAAATACATTAC
** *
45353238 TT--T-AAATTTATTAA
1 TTACTAAAATACATTAC
*
45353252 TTACTTAAATACATTAC
1 TTACTAAAATACATTAC
45353269 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
45353286 TTACTAAAAT
1 TTACTAAAAT
45353296 TTGTTTAAAT
Statistics
Matches: 239, Mismatches: 24, Indels: 84
0.69 0.07 0.24
Matches are distributed among these distances:
10 8 0.03
11 2 0.01
12 2 0.01
13 6 0.03
14 6 0.03
15 2 0.01
16 14 0.06
17 136 0.57
18 4 0.02
19 13 0.05
20 3 0.01
22 4 0.02
23 30 0.13
24 9 0.04
ACGTcount: A:0.44, C:0.11, G:0.02, T:0.43
Consensus pattern (17 bp):
TTACTAAAATACATTAC
Found at i:45353061 original size:40 final size:39
Alignment explanation
Indices: 45352991--45353175 Score: 241
Period size: 40 Copynumber: 4.6 Consensus size: 39
45352981 AATACATTAC
* *
45352991 TTACTAAAATAAATTACTTACTAAA---ATTTAAATTTA
1 TTACTAAAATACATTACTTACTAAATTTGTTTAAATTTA
45353027 TTACTAAAATACATTACTTACATAAATTTGTTTAAATTTA
1 TTACTAAAATACATTACTTAC-TAAATTTGTTTAAATTTA
*
45353067 TTTCTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
1 TTACTAAAATACATTACTTACT-AAATTTGTTTAAATTTA
*
45353107 TTACTAAAATACATTACTTACTAAAATTTGTATAAATTTATTAA
1 TTACTAAAATACATTACTTACT-AAATTTGTTTAAA--T-TT-A
*
45353151 TTACTTAAATACATTACTTACTAAA
1 TTACTAAAATACATTACTTACTAAA
45353176 ATACATTACT
Statistics
Matches: 134, Mismatches: 6, Indels: 11
0.89 0.04 0.07
Matches are distributed among these distances:
36 20 0.15
37 4 0.03
39 1 0.01
40 81 0.60
42 1 0.01
43 5 0.04
44 22 0.16
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.44
Consensus pattern (39 bp):
TTACTAAAATACATTACTTACTAAATTTGTTTAAATTTA
Found at i:45353123 original size:80 final size:80
Alignment explanation
Indices: 45352986--45353177 Score: 268
Period size: 80 Copynumber: 2.4 Consensus size: 80
45352976 ACTAAAATAC
*
45352986 ATTACTTACTAAAATAAATTACTTACTAAAA-TTTAAATTTATTACTAAAATACATTACTTAC-A
1 ATTA-TTACTAAAATACATTACTTACTAAAATTTTAAATTTATTACTAAAATACATTACTTACTA
*
45353049 TAAATTTGTTTAAATTT
65 -AAATTTGTATAAATTT
45353066 A-T-TT-CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTAC
1 ATTATTACTAAAATACATTACTTACTAAAA--T-TTTAAATTTATTACTAAAATACATTACTTAC
45353128 TAAAATTTGTATAAATTT
63 TAAAATTTGTATAAATTT
*
45353146 ATTAATTACTTAAATACATTACTTACTAAAAT
1 ATT-ATTACTAAAATACATTACTTACTAAAAT
45353178 ACATTACTTA
Statistics
Matches: 100, Mismatches: 3, Indels: 16
0.84 0.03 0.13
Matches are distributed among these distances:
76 22 0.22
77 2 0.02
79 1 0.01
80 48 0.48
81 2 0.02
82 1 0.01
83 2 0.02
84 22 0.22
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.44
Consensus pattern (80 bp):
ATTATTACTAAAATACATTACTTACTAAAATTTTAAATTTATTACTAAAATACATTACTTACTAA
AATTTGTATAAATTT
Found at i:45353190 original size:61 final size:57
Alignment explanation
Indices: 45352966--45353234 Score: 222
Period size: 53 Copynumber: 4.6 Consensus size: 57
45352956 GATTGAATGT
*
45352966 TAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACTAAAA--T-T-
1 TAAATTTATTACTAAAATACATTACTTACTAAAATACATTACTTACTAAAATTTGTA
* *
45353019 TAAATTTATTACTAAAATACATTACTTAC-ATAAAT---TT-GTT--TAAATTTATTTCTA
1 TAAATTTATTACTAAAATACATTACTTACTA-AAATACATTACTTACTAAA---ATTTGTA
*
45353073 -AAATACATTACTTACTAAAATTTGTTTAAATTTA-TTACTAAAATACATTACTTACTAAAATTT
1 TAAAT---TTA-TTACTAAAA------TACA-TTACTTACTAAAATACATTACTTACTAAAATTT
45353136 GTA
55 GTA
* *
45353139 TAAATTTATTAATTACTTAAATACATTACTTACTAAAATACATTACTTACTAAAATTTGTT
1 TAAA--T-TT-ATTACTAAAATACATTACTTACTAAAATACATTACTTACTAAAATTTGTA
45353200 TAAATTTATTACTAAAATACATTACTTACTAAAAT
1 TAAATTTATTACTAAAATACATTACTTACTAAAAT
45353235 TTGTTTAAAT
Statistics
Matches: 177, Mismatches: 8, Indels: 58
0.73 0.03 0.24
Matches are distributed among these distances:
47 4 0.02
49 2 0.01
50 3 0.02
52 2 0.01
53 38 0.21
56 3 0.02
57 36 0.20
58 2 0.01
59 1 0.01
60 3 0.02
61 38 0.21
63 11 0.06
64 4 0.02
66 8 0.05
67 16 0.09
68 1 0.01
69 5 0.03
ACGTcount: A:0.45, C:0.11, G:0.01, T:0.43
Consensus pattern (57 bp):
TAAATTTATTACTAAAATACATTACTTACTAAAATACATTACTTACTAAAATTTGTA
Found at i:45353191 original size:101 final size:101
Alignment explanation
Indices: 45353070--45353323 Score: 483
Period size: 101 Copynumber: 2.5 Consensus size: 101
45353060 AAATTTATTT
45353070 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATT
1 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATT
45353135 TGTATAAATTTATTAATTACTTAAATACATTACTTA
66 TGTATAAATTTATTAATTACTTAAATACATTACTTA
45353171 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATT
1 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATT
*
45353236 TGTTTAAATTTATTAATTACTTAAATACATTACTTA
66 TGTATAAATTTATTAATTACTTAAATACATTACTTA
*
45353272 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTTAAATA-ATTA
1 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTA
45353324 TAAATAAGAT
Statistics
Matches: 151, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
100 4 0.03
101 147 0.97
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.44
Consensus pattern (101 bp):
CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATT
TGTATAAATTTATTAATTACTTAAATACATTACTTA
Found at i:45353221 original size:40 final size:43
Alignment explanation
Indices: 45353163--45353278 Score: 184
Period size: 40 Copynumber: 2.7 Consensus size: 43
45353153 ACTTAAATAC
*
45353163 ATTACTTACTAAAATACATTACTTACTAAAATTTGTTTAAA-T
1 ATTAATTACTAAAATACATTACTTACTAAAATTTGTTTAAATT
45353205 -TT-ATTACTAAAATACATTACTTACTAAAATTTGTTTAAATTT
1 ATTAATTACTAAAATACATTACTTACTAAAATTTGTTTAAA-TT
*
45353247 ATTAATTACTTAAATACATTACTTACTAAAAT
1 ATTAATTACTAAAATACATTACTTACTAAAAT
45353279 ACATTACTTA
Statistics
Matches: 68, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
40 36 0.53
41 2 0.03
42 1 0.01
43 2 0.03
44 27 0.40
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.44
Consensus pattern (43 bp):
ATTAATTACTAAAATACATTACTTACTAAAATTTGTTTAAATT
Found at i:45353545 original size:73 final size:73
Alignment explanation
Indices: 45353468--45353613 Score: 292
Period size: 73 Copynumber: 2.0 Consensus size: 73
45353458 AATAAAATAT
45353468 AAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTAA
1 AAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTAA
45353533 TAATTATA
66 TAATTATA
45353541 AAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTAA
1 AAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTAA
45353606 TAATTATA
66 TAATTATA
45353614 TTAGTAATGT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 73 1.00
ACGTcount: A:0.51, C:0.01, G:0.07, T:0.41
Consensus pattern (73 bp):
AAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTAA
TAATTATA
Found at i:45353580 original size:38 final size:38
Alignment explanation
Indices: 45353460--45353581 Score: 119
Period size: 39 Copynumber: 3.3 Consensus size: 38
45353450 AAAGATAAAA
45353460 TAAAATATAAAAAATATGTGGAATATTAAAATTGACTAT
1 TAAAATA-AAAAAATATGTGGAATATTAAAATTGACTAT
*** * * *
45353499 TAAAATAAAATGTTAT-T---TTATTAAATATT-ATTAA
1 TAAAATAAAAAAATATGTGGAATATTAAA-ATTGACTAT
*
45353533 TAATTATAAAAAAATATGTGGAATATTAAAATTGACTAT
1 TAA-AATAAAAAAATATGTGGAATATTAAAATTGACTAT
45353572 TAAAATAAAA
1 TAAAATAAAA
45353582 TGTTATTTTA
Statistics
Matches: 62, Mismatches: 14, Indels: 15
0.68 0.15 0.16
Matches are distributed among these distances:
34 13 0.21
35 12 0.19
36 1 0.02
37 1 0.02
38 15 0.24
39 20 0.32
ACGTcount: A:0.54, C:0.02, G:0.07, T:0.37
Consensus pattern (38 bp):
TAAAATAAAAAAATATGTGGAATATTAAAATTGACTAT
Found at i:45353692 original size:18 final size:18
Alignment explanation
Indices: 45353669--45354033 Score: 126
Period size: 18 Copynumber: 19.6 Consensus size: 18
45353659 AATAACTTAC
45353669 AACTTACATAATACATTT
1 AACTTACATAATACATTT
* *
45353687 AACTTACATTACTTACA-TA
1 AACTTACA-TA-ATACATTT
* *
45353706 ATACATA-ATAACTTACAACTT
1 A-ACTTACATAA--TAC-ATTT
45353727 ACAACTTACATAATACATTT
1 A-A-CTTACATAATACATTT
45353747 AACTTACAACTTACATAATACATTT
1 AACTT---AC--A--TAATACATTT
45353772 AACTTACATAATACATTTAACTT
1 AACTTACATAATACA--T---TT
45353795 ACAACTTACATAATACATTT
1 --AACTTACATAATACATTT
45353815 AACTTACATAATACATTT
1 AACTTACATAATACATTT
* *
45353833 AACTTACA-ACTTACA--C
1 AACTTACATA-ATACATTT
*
45353849 AA--TACATAATA-ACTTAC
1 AACTTACATAATACA-TT-T
*
45353866 AACTTACATAATACATAAT
1 AACTTACATAATACAT-TT
*
45353885 AACTTACA-ACTTACA--T
1 AACTTACATA-ATACATTT
*
45353901 AA--TACATAATA-ACTTAC
1 AACTTACATAATACA-TT-T
45353918 AACTTACATAATACATTT
1 AACTTACATAATACATTT
* *
45353936 AACTTACA-ACTTACA--C
1 AACTTACATA-ATACATTT
* *
45353952 AA--TACAT-TTA-ACTTAC
1 AACTTACATAATACA-TT-T
*
45353968 AACTTACATAATACATAAT
1 AACTTACATAATACAT-TT
*
45353987 AACTTACA-ACTTACATTT
1 AACTTACATA-ATACATTT
45354005 AACTTACATAATACATTT
1 AACTTACATAATACATTT
45354023 AACTTACATAA
1 AACTTACATAA
45354034 CTTACATAAC
Statistics
Matches: 267, Mismatches: 25, Indels: 110
0.66 0.06 0.27
Matches are distributed among these distances:
12 1 0.00
13 5 0.02
14 16 0.06
15 2 0.01
16 10 0.04
17 7 0.03
18 96 0.36
19 59 0.22
20 20 0.07
21 8 0.03
22 5 0.02
23 8 0.03
25 30 0.11
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (18 bp):
AACTTACATAATACATTT
Found at i:45353694 original size:25 final size:25
Alignment explanation
Indices: 45353650--45354002 Score: 410
Period size: 25 Copynumber: 14.1 Consensus size: 25
45353640 ATTTTATTAA
*
45353650 ATAATACATAATAACTTACAACTTAC
1 ATAATACAT-TTAACTTACAACTTAC
45353676 ATAATACATTTAACTTACATTACTTAC
1 ATAATACATTTAACTTACA--ACTTAC
45353703 ATAATACATAATAACTTACAACTTACAACTTAC
1 ATAATAC---AT---TT--AACTTACAACTTAC
45353736 ATAATACATTTAACTTACAACTTAC
1 ATAATACATTTAACTTACAACTTAC
45353761 ATAATACA--T---TT--AACTTAC
1 ATAATACATTTAACTTACAACTTAC
45353779 ATAATACATTTAACTTACAACTTAC
1 ATAATACATTTAACTTACAACTTAC
45353804 ATAATACA--T---TT--AACTTAC
1 ATAATACATTTAACTTACAACTTAC
45353822 ATAATACATTTAACTTACAACTTAC
1 ATAATACATTTAACTTACAACTTAC
* *
45353847 ACAATACATAATAACTTACAACTTAC
1 ATAATACAT-TTAACTTACAACTTAC
*
45353873 ATAATACATAATAACTTACAACTTAC
1 ATAATACAT-TTAACTTACAACTTAC
*
45353899 ATAATACATAATAACTTACAACTTAC
1 ATAATACAT-TTAACTTACAACTTAC
45353925 ATAATACATTTAACTTACAACTTAC
1 ATAATACATTTAACTTACAACTTAC
*
45353950 ACAATACATTTAACTTACAACTTAC
1 ATAATACATTTAACTTACAACTTAC
*
45353975 ATAATACATAATAACTTACAACTTAC
1 ATAATACAT-TTAACTTACAACTTAC
45354001 AT
1 AT
45354003 TTAACTTACA
Statistics
Matches: 293, Mismatches: 8, Indels: 52
0.83 0.02 0.15
Matches are distributed among these distances:
18 30 0.10
20 6 0.02
23 6 0.02
25 108 0.37
26 101 0.34
27 15 0.05
30 4 0.01
33 15 0.05
35 8 0.03
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (25 bp):
ATAATACATTTAACTTACAACTTAC
Found at i:45353755 original size:32 final size:34
Alignment explanation
Indices: 45353687--45354047 Score: 211
Period size: 33 Copynumber: 10.4 Consensus size: 34
45353677 TAATACATTT
45353687 AACTTACATTACTTACATAATACATAATAACTTAC
1 AACTTACA-TACTTACATAATACATAATAACTTAC
*
45353722 AACTTACA-ACTTACATAATACAT-TTAACTTAC
1 AACTTACATACTTACATAATACATAATAACTTAC
* *
45353754 AACTTACATA-ATACATTTAACTTACATAAT-ACATT-T
1 AACTTACATACTTACA--TAA--TACATAATAAC-TTAC
*
45353790 AACTTACA-ACTTACATAATACAT-TTAACTTAC
1 AACTTACATACTTACATAATACATAATAACTTAC
* * * * *
45353822 ATA-ATACATTTAACTTACA-ACTTACACAAT-ACATAAT
1 A-ACTTACA--T-ACTTACATA-ATACATAATAAC-TTAC
45353859 AACTTACA-ACTTACATAATACATAATAACTTAC
1 AACTTACATACTTACATAATACATAATAACTTAC
* * *
45353892 AACTTACATA-ATACATAATA-ACTTACAACTTAC
1 AACTTACATACTTACATAATACA-TAATAACTTAC
* * * *
45353925 ATA-ATACATTTAACTTACA-ACTTACACAAT-ACATT-T
1 A-ACTTACA--T-ACTTACATA-ATACATAATAAC-TTAC
45353961 AACTTACA-ACTTACATAATACATAATAACTTAC
1 AACTTACATACTTACATAATACATAATAACTTAC
*
45353994 AACTTACATTTAACTTACATAATACAT-TTAACTTAC
1 AACTTACA--T-ACTTACATAATACATAATAACTTAC
45354030 ATAACTTACATAACTTAC
1 --AACTTACAT-ACTTAC
45354048 CATTGCAATT
Statistics
Matches: 252, Mismatches: 33, Indels: 81
0.69 0.09 0.22
Matches are distributed among these distances:
31 3 0.01
32 49 0.19
33 75 0.30
34 11 0.04
35 12 0.05
36 58 0.23
37 35 0.14
38 9 0.04
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (34 bp):
AACTTACATACTTACATAATACATAATAACTTAC
Found at i:45354002 original size:26 final size:26
Alignment explanation
Indices: 45353815--45354002 Score: 310
Period size: 26 Copynumber: 7.3 Consensus size: 26
45353805 TAATACATTT
*
45353815 AACTTACATAATACAT-TTAACTTAC
1 AACTTACATAATACATAATAACTTAC
*
45353840 AACTTACACAATACATAATAACTTAC
1 AACTTACATAATACATAATAACTTAC
45353866 AACTTACATAATACATAATAACTTAC
1 AACTTACATAATACATAATAACTTAC
45353892 AACTTACATAATACATAATAACTTAC
1 AACTTACATAATACATAATAACTTAC
*
45353918 AACTTACATAATACAT-TTAACTTAC
1 AACTTACATAATACATAATAACTTAC
* *
45353943 AACTTACACAATACAT-TTAACTTAC
1 AACTTACATAATACATAATAACTTAC
45353968 AACTTACATAATACATAATAACTTAC
1 AACTTACATAATACATAATAACTTAC
45353994 AACTTACAT
1 AACTTACAT
45354003 TTAACTTACA
Statistics
Matches: 154, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
25 62 0.40
26 92 0.60
ACGTcount: A:0.47, C:0.21, G:0.00, T:0.32
Consensus pattern (26 bp):
AACTTACATAATACATAATAACTTAC
Found at i:45354010 original size:11 final size:10
Alignment explanation
Indices: 45353994--45354047 Score: 55
Period size: 9 Copynumber: 5.7 Consensus size: 10
45353984 AATAACTTAC
45353994 AACTTACATTT
1 AACTTACA-TT
45354005 AACTTACA-T
1 AACTTACATT
45354014 AA--TACATTT
1 AACTTACA-TT
45354023 AACTTACA-T
1 AACTTACATT
45354032 AACTTACA-T
1 AACTTACATT
45354041 AACTTAC
1 AACTTAC
45354048 CATTGCAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
7 4 0.10
9 23 0.59
11 12 0.31
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.37
Consensus pattern (10 bp):
AACTTACATT
Found at i:45359508 original size:21 final size:21
Alignment explanation
Indices: 45359482--45359552 Score: 97
Period size: 21 Copynumber: 3.4 Consensus size: 21
45359472 CTACAACTTA
* *
45359482 AAGCAGAGGCGGAAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
*
45359503 AAGCAGCGGCTGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* *
45359524 AAGCGGAGGCTGCAGCGAGAG
1 AAGCAGAGGCTGCAGCGAGGG
45359545 AAGCAGAG
1 AAGCAGAG
45359553 CAGAGCAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.31, C:0.18, G:0.48, T:0.03
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGGG
Found at i:45359923 original size:40 final size:40
Alignment explanation
Indices: 45359866--45360034 Score: 176
Period size: 42 Copynumber: 4.1 Consensus size: 40
45359856 TAGTGGCGTT
*
45359866 TTTGTATAAAAGCGCCACTAAAGAACATGTTCTTTCGCGGCG
1 TTTGTA-AAAA-CGCCACTAAAGAACATGTTCTTTAGCGGCG
* *
45359908 TTTGTAAAAATGCCACTAAAGAACATGTTATTTAGCGGCG
1 TTTGTAAAAACGCCACTAAAGAACATGTTCTTTAGCGGCG
* * * *
45359948 CTTAGAAAAAAACGCCGCTAAAGAACATGATCTTTAGCGGCG
1 -TTTG-TAAAAACGCCACTAAAGAACATGTTCTTTAGCGGCG
* ** * *
45359990 TTTTTCCTTAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCG
1 TTTGT--AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCG
45360032 TTT
1 TTT
45360035 TTATTTGTAA
Statistics
Matches: 107, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
40 27 0.25
41 9 0.08
42 71 0.66
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (40 bp):
TTTGTAAAAACGCCACTAAAGAACATGTTCTTTAGCGGCG
Found at i:45362050 original size:46 final size:46
Alignment explanation
Indices: 45361999--45362093 Score: 163
Period size: 46 Copynumber: 2.1 Consensus size: 46
45361989 ACAAAGATAG
*
45361999 AAACCAAAAAATTATCTCCTAAATTTTAACATCTAATCTCCTAATT
1 AAACCAAAAAATTATCTCCTAAACTTTAACATCTAATCTCCTAATT
* *
45362045 AAACCAAAACATTATCTCCTAAACTTTAGCATCTAATCTCCTAATT
1 AAACCAAAAAATTATCTCCTAAACTTTAACATCTAATCTCCTAATT
45362091 AAA
1 AAA
45362094 AGAAAAGAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.43, C:0.23, G:0.01, T:0.33
Consensus pattern (46 bp):
AAACCAAAAAATTATCTCCTAAACTTTAACATCTAATCTCCTAATT
Found at i:45372374 original size:68 final size:71
Alignment explanation
Indices: 45372301--45372438 Score: 203
Period size: 68 Copynumber: 2.0 Consensus size: 71
45372291 TTTAATAGAT
*
45372301 TTAATATTAAATTTAATTTAATACTTATCTTAATAG-T-AT-TT-TATTAATTTAATATTAAAGT
1 TTAATATTAAATTAAATTTAATACTTATCTT-ATAGATAATATTCTATTAATTTAATATTAAAGT
45372362 GATTATC
65 GATTATC
* *
45372369 TTAATATTAAATTAAATTTAATATTTATCTTATAGATAAATATTCTATTAATTTACTATTAAAGT
1 TTAATATTAAATTAAATTTAATACTTATCTTATAGAT-AATATTCTATTAATTTAATATTAAAGT
45372434 GATTA
65 GATTA
45372439 AATTTAATCA
Statistics
Matches: 62, Mismatches: 3, Indels: 6
0.87 0.04 0.08
Matches are distributed among these distances:
67 4 0.06
68 30 0.48
70 2 0.03
71 2 0.03
72 24 0.39
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.50
Consensus pattern (71 bp):
TTAATATTAAATTAAATTTAATACTTATCTTATAGATAATATTCTATTAATTTAATATTAAAGTG
ATTATC
Found at i:45375607 original size:14 final size:13
Alignment explanation
Indices: 45375585--45375618 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
45375575 TTATTTCAAT
45375585 AAAAAAAACACAA
1 AAAAAAAACACAA
*
45375598 AAAGAAAAACAGAA
1 AAA-AAAAACACAA
45375612 AAAAAAA
1 AAAAAAA
45375619 CTCCAAGAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.85, C:0.09, G:0.06, T:0.00
Consensus pattern (13 bp):
AAAAAAAACACAA
Found at i:45377503 original size:291 final size:296
Alignment explanation
Indices: 45376563--45377741 Score: 1798
Period size: 297 Copynumber: 4.0 Consensus size: 296
45376553 CTCACGACGT
* *
45376563 TTCTGAAAACATCGTTGTTAGCACCATTGGCATAGGTACCATGACGCTTTGGAAAAAGCATTAGC
1 TTCTGAAAACATCGTTGTTAGCACCATTGGCATAGGTACCATGACGCTTTGGAAAAAGCGTCAGC
* * *
45376628 ATAATTCAACCTAAGTCAACCTTTATTCAAGGGTTGGTAAAAACCTAGTCAAGGTCGACGTTT-A
66 ATAATTCAACCTAGGTCAACCTTTATTCAAGGGTTGGTAAAGACCTAGTCAAGGTCAACGTTTAA
* * *
45376692 AAAAGGTTGGGATAGGAGGAATTAGACGATCGAAAAAAGTCGAAATAAAGCATTCATATGCCAAC
131 AAAAGGTTGGGATAGGAGGAATTAGGCGATCGAAAAAAGTC-AGATAAAGCATTCATATGCCGAC
**
45376757 TTATAAAGAGTTGGTTCATGCCCCCGTCAAAGGCTACATAAAAATAGTCGAGTTAGGTCGCACTT
195 TTATAAAGAGTTGGTTCATGCCCCCGTCAAAGGAGACATAAAAATAGTCGAGTTAGGTCGCACTT
*
45376822 AGT-CAGACTTTTAAAGAGTTGGCACATGTGTCGACAC
260 AGTCCA-ACTTTTAAAGAGTTGGCACATGTGTCAACAC
* *
45376859 TTCTGAAAACATCGTTGTTAGCACCATTGGCATAGGTGCCATGACGCTTTGGAAAAAGCGTCGGC
1 TTCTGAAAACATCGTTGTTAGCACCATTGGCATAGGTACCATGACGCTTTGGAAAAAGCGTCAGC
45376924 ATAATTCAACCTAGGTCAACCTTTATTCAAGGGTTGGTAAAGACCTAGTCAAGGTCAACGTTTAA
66 ATAATTCAACCTAGGTCAACCTTTATTCAAGGGTTGGTAAAGACCTAGTCAAGGTCAACGTTTAA
* * *
45376989 AAAAGGTTGGGATAGGAGGAATTAAGCGACCCAAAAAAGTCAGAATAAAGCATTCATATGCCGAC
131 AAAAGGTTGGGATAGGAGGAATTAGGCGATCGAAAAAAGTCAG-ATAAAGCATTCATATGCCGAC
* * * *
45377054 TTATAAAGAATTGGTTCATGCCCCCTTCAAAGGTGACATAAAAATAGTTGAGTTAGGTCGCACTT
195 TTATAAAGAGTTGGTTCATGCCCCCGTCAAAGGAGACATAAAAATAGTCGAGTTAGGTCGCACTT
* * * *
45377119 AGTCCATCTTTTAAAGAGTTGGCACATGCGTCGACGC
260 AGTCCAACTTTTAAAGAGTTGGCACATGTGTCAACAC
*
45377156 TTCTGAAAACATCATTGTTAGCACCATTGGCATAGGTACCATGACGCTTTGGAAAAAGCGTCAGC
1 TTCTGAAAACATCGTTGTTAGCACCATTGGCATAGGTACCATGACGCTTTGGAAAAAGCGTCAGC
* *
45377221 ATAATTCAACCTAGGTCAACCTTTATTCAAGGGTTGGTAAAGACCTAGTCAAGGTCGACATTTAA
66 ATAATTCAACCTAGGTCAACCTTTATTCAAGGGTTGGTAAAGACCTAGTCAAGGTCAACGTTTAA
* * * * *
45377286 AACAGGTTGAGATAGGAGGAATTAGGCGATCGAAAAAATTC-G-GAAA-CATTCATATACCGACT
131 AAAAGGTTGGGATAGGAGGAATTAGGCGATCGAAAAAAGTCAGATAAAGCATTCATATGCCGACT
* *
45377348 TATAAAGAGTTGGTTCATTCCCCAGTCAAAGG-GACA-AAAAATAGTCGAGTTAGGTCGCACTTA
196 TATAAAGAGTTGGTTCATGCCCCCGTCAAAGGAGACATAAAAATAGTCGAGTTAGGTCGCACTTA
* *
45377411 GTCCAACTTTTAAAGAATTGGCACATGTGTCAACTC
261 GTCCAACTTTTAAAGAGTTGGCACATGTGTCAACAC
* * * *
45377447 TTCTGAAAACATCGTTGTTAGCACCATTAGCATAGGTACCATAACACTTTGGAAAAAGCGTCGGC
1 TTCTGAAAACATCGTTGTTAGCACCATTGGCATAGGTACCATGACGCTTTGGAAAAAGCGTCAGC
* *
45377512 ATAATTCAACCAAGGTCAACCTTTATTTAAGGGTTGGTAAAGACCTAGTCAAGGTCAACGTTTAA
66 ATAATTCAACCTAGGTCAACCTTTATTCAAGGGTTGGTAAAGACCTAGTCAAGGTCAACGTTTAA
* * * * *
45377577 AAAAGGTTGGCATAGGAGGAATTAGGAGA-CAAAAAAAAGTCAGAATAAAGAATTCATATGTCGA
131 AAAAGGTTGGGATAGGAGGAATTAGGCGATC-GAAAAAAGTCAG-ATAAAGCATTCATATGCCGA
* *
45377641 CTTATAAAGAGTTGGTTCATGCCCTCGTCAAAGGAGACATAAAAATAGTCGAGTTAGGTCACACT
194 CTTATAAAGAGTTGGTTCATGCCCCCGTCAAAGGAGACATAAAAATAGTCGAGTTAGGTCGCACT
**
45377706 TAGTCTGACTTTTAAAGAGTTGGCACATGTGTCAAC
259 TAGTCCAACTTTTAAAGAGTTGGCACATGTGTCAAC
45377742 CAAAGCCAAC
Statistics
Matches: 803, Mismatches: 70, Indels: 19
0.90 0.08 0.02
Matches are distributed among these distances:
290 1 0.00
291 211 0.26
292 5 0.01
293 43 0.05
294 6 0.01
295 42 0.05
296 127 0.16
297 366 0.46
298 2 0.00
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (296 bp):
TTCTGAAAACATCGTTGTTAGCACCATTGGCATAGGTACCATGACGCTTTGGAAAAAGCGTCAGC
ATAATTCAACCTAGGTCAACCTTTATTCAAGGGTTGGTAAAGACCTAGTCAAGGTCAACGTTTAA
AAAAGGTTGGGATAGGAGGAATTAGGCGATCGAAAAAAGTCAGATAAAGCATTCATATGCCGACT
TATAAAGAGTTGGTTCATGCCCCCGTCAAAGGAGACATAAAAATAGTCGAGTTAGGTCGCACTTA
GTCCAACTTTTAAAGAGTTGGCACATGTGTCAACAC
Found at i:45377684 original size:588 final size:591
Alignment explanation
Indices: 45376557--45377734 Score: 1918
Period size: 588 Copynumber: 2.0 Consensus size: 591
45376547 ACGATTCTCA
* *
45376557 CGACGTTTCTGAAAACATCGTTGTTAGCACCATTGGCATAGGTACCATGACGCTTTGGAAAAAGC
1 CGACGCTTCTGAAAACATCATTGTTAGCACCATTGGCATAGGTACCATGACGCTTTGGAAAAAGC
*
45376622 ATTAGCATAATTCAACCTAAGTCAACCTTTATTCAAGGGTTGGTAAAAACCTAGTCAAGGTCGAC
66 ATCAGCATAATTCAACCTAAGTCAACCTTTATTCAAGGGTTGGTAAAAACCTAGTCAAGGTCGAC
* * * *
45376687 GTTTAAAAAGGTTGGGATAGGAGGAATTAGACGATCGAAAAAAGTCGAAATAAAGCATTCATATG
131 ATTTAAAAAGGTTGAGATAGGAGGAATTAGACGATCGAAAAAAGTCG--AGAAAGCATTCATATA
* *
45376752 CCAACTTATAAAGAGTTGGTTCATGCCCCCGTCAAAGGCTACATAAAAATAGTCGAGTTAGGTCG
194 CCAACTTATAAAGAGTTGGTTCATGCCCCAGTCAAAGGCGACATAAAAATAGTCGAGTTAGGTCG
* *
45376817 CACTTAGTCAGACTTTTAAAGAGTTGGCACATGTGTCGACACTTCTGAAAACATCGTTGTTAGCA
259 CACTTAGTCAGACTTTTAAAGAATTGGCACATGTGTCAACACTTCTGAAAACATCGTTGTTAGCA
* * * * *
45376882 CCATTGGCATAGGTGCCATGACGCTTTGGAAAAAGCGTCGGCATAATTCAACCTAGGTCAACCTT
324 CCATTAGCATAGGTACCATAACACTTTGGAAAAAGCGTCGGCATAATTCAACCAAGGTCAACCTT
*
45376947 TATTCAAGGGTTGGTAAAGACCTAGTCAAGGTCAACGTTTAAAAAAGGTTGGGATAGGAGGAATT
389 TATTCAAGGGTTGGTAAAGACCTAGTCAAGGTCAACGTTTAAAAAAGGTTGGCATAGGAGGAATT
* ** *
45377012 AAGCGACCCAAAAAAGTCAGAATAAAGCATTCATATGCCGACTTATAAAGAATTGGTTCATGCCC
454 AAGAGACAAAAAAAAGTCAGAATAAAGAATTCATATGCCGACTTATAAAGAATTGGTTCATGCCC
* * * *
45377077 CCTTCAAAGGTGACATAAAAATAGTTGAGTTAGGTCGCACTTAGTC-CATCTTTTAAAGAGTTGG
519 CCGTCAAAGGAGACATAAAAATAGTCGAGTTAGGTCACACTTAGTCTCA-CTTTTAAAGAGTTGG
45377141 CACATGCGT
583 CACATGCGT
45377150 CGACGCTTCTGAAAACATCATTGTTAGCACCATTGGCATAGGTACCATGACGCTTTGGAAAAAGC
1 CGACGCTTCTGAAAACATCATTGTTAGCACCATTGGCATAGGTACCATGACGCTTTGGAAAAAGC
* * *
45377215 GTCAGCATAATTCAACCTAGGTCAACCTTTATTCAAGGGTTGGTAAAGACCTAGTCAAGGTCGAC
66 ATCAGCATAATTCAACCTAAGTCAACCTTTATTCAAGGGTTGGTAAAAACCTAGTCAAGGTCGAC
* *
45377280 ATTTAAAACAGGTTGAGATAGGAGGAATTAGGCGATCGAAAAAATTCG-GAAA-CATTCATATAC
131 ATTTAAAA-AGGTTGAGATAGGAGGAATTAGACGATCGAAAAAAGTCGAGAAAGCATTCATATAC
* *
45377343 CGACTTATAAAGAGTTGGTTCATTCCCCAGTCAAAGG-GACA-AAAAATAGTCGAGTTAGGTCGC
195 CAACTTATAAAGAGTTGGTTCATGCCCCAGTCAAAGGCGACATAAAAATAGTCGAGTTAGGTCGC
*
45377406 ACTTAGTCCA-ACTTTTAAAGAATTGGCACATGTGTCAACTCTTCTGAAAACATCGTTGTTAGCA
260 ACTTAGT-CAGACTTTTAAAGAATTGGCACATGTGTCAACACTTCTGAAAACATCGTTGTTAGCA
45377470 CCATTAGCATAGGTACCATAACACTTTGGAAAAAGCGTCGGCATAATTCAACCAAGGTCAACCTT
324 CCATTAGCATAGGTACCATAACACTTTGGAAAAAGCGTCGGCATAATTCAACCAAGGTCAACCTT
*
45377535 TATTTAAGGGTTGGTAAAGACCTAGTCAAGGTCAACGTTTAAAAAAGGTTGGCATAGGAGGAATT
389 TATTCAAGGGTTGGTAAAGACCTAGTCAAGGTCAACGTTTAAAAAAGGTTGGCATAGGAGGAATT
* * *
45377600 AGGAGACAAAAAAAAGTCAGAATAAAGAATTCATATGTCGACTTATAAAGAGTTGGTTCATGCCC
454 AAGAGACAAAAAAAAGTCAGAATAAAGAATTCATATGCCGACTTATAAAGAATTGGTTCATGCCC
* *
45377665 TCGTCAAAGGAGACATAAAAATAGTCGAGTTAGGTCACACTTAGTCTGACTTTTAAAGAGTTGGC
519 CCGTCAAAGGAGACATAAAAATAGTCGAGTTAGGTCACACTTAGTCTCACTTTTAAAGAGTTGGC
45377730 ACATG
584 ACATG
45377735 TGTCAACCAA
Statistics
Matches: 543, Mismatches: 39, Indels: 11
0.92 0.07 0.02
Matches are distributed among these distances:
588 323 0.59
589 6 0.01
590 44 0.08
591 3 0.01
593 131 0.24
594 36 0.07
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (591 bp):
CGACGCTTCTGAAAACATCATTGTTAGCACCATTGGCATAGGTACCATGACGCTTTGGAAAAAGC
ATCAGCATAATTCAACCTAAGTCAACCTTTATTCAAGGGTTGGTAAAAACCTAGTCAAGGTCGAC
ATTTAAAAAGGTTGAGATAGGAGGAATTAGACGATCGAAAAAAGTCGAGAAAGCATTCATATACC
AACTTATAAAGAGTTGGTTCATGCCCCAGTCAAAGGCGACATAAAAATAGTCGAGTTAGGTCGCA
CTTAGTCAGACTTTTAAAGAATTGGCACATGTGTCAACACTTCTGAAAACATCGTTGTTAGCACC
ATTAGCATAGGTACCATAACACTTTGGAAAAAGCGTCGGCATAATTCAACCAAGGTCAACCTTTA
TTCAAGGGTTGGTAAAGACCTAGTCAAGGTCAACGTTTAAAAAAGGTTGGCATAGGAGGAATTAA
GAGACAAAAAAAAGTCAGAATAAAGAATTCATATGCCGACTTATAAAGAATTGGTTCATGCCCCC
GTCAAAGGAGACATAAAAATAGTCGAGTTAGGTCACACTTAGTCTCACTTTTAAAGAGTTGGCAC
ATGCGT
Found at i:45382742 original size:29 final size:29
Alignment explanation
Indices: 45382674--45382821 Score: 127
Period size: 30 Copynumber: 5.0 Consensus size: 29
45382664 AATACTAAAA
45382674 TTTAAAATTTACATTTTAACCCCCCAACTT
1 TTTAAAATTTACATTTTAA-CCCCCAACTT
* *
45382704 TTTAAAATTTATATTTTAACCTCCAACTT
1 TTTAAAATTTACATTTTAACCCCCAACTT
*** **
45382733 TTTGTTATTTACATTTTGGCCCCCAACTT
1 TTTAAAATTTACATTTTAACCCCCAACTT
** *
45382762 TTCCTAAAA-TTACATTTTGTCCTCCTAACTT
1 TT--TAAAATTTACATTTTAACC-CCCAACTT
** *
45382793 TTTACTATTTACATTTTGATCCCCCAACT
1 TTTAAAATTTACATTTT-AACCCCCAACT
45382822 GCTATATGAA
Statistics
Matches: 95, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
29 36 0.38
30 45 0.47
31 14 0.15
ACGTcount: A:0.27, C:0.24, G:0.03, T:0.45
Consensus pattern (29 bp):
TTTAAAATTTACATTTTAACCCCCAACTT
Found at i:45382802 original size:60 final size:58
Alignment explanation
Indices: 45382680--45382821 Score: 160
Period size: 60 Copynumber: 2.4 Consensus size: 58
45382670 AAAATTTAAA
* * **
45382680 ATTTACATTTTAACCCCCCAACTTTTTAAAATTTATATTTTAACCTCCAACTTTTTGTT
1 ATTTACATTTT-GCCCCCCAACTTTTTAAAATTTACATTTTAACCTCCAACTTTTTACT
* **
45382739 ATTTACATTTTGGCCCCCAACTTTTCCTAAAA-TTACATTTTGTCCTCCTAACTTTTTACT
1 ATTTACATTTTGCCCCCCAACTTTT--TAAAATTTACATTTTAACCTCC-AACTTTTTACT
*
45382799 ATTTACATTTTGATCCCCCAACT
1 ATTTACATTTTG-CCCCCCAACT
45382822 GCTATATGAA
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
58 12 0.17
59 24 0.34
60 26 0.37
61 9 0.13
ACGTcount: A:0.26, C:0.25, G:0.04, T:0.45
Consensus pattern (58 bp):
ATTTACATTTTGCCCCCCAACTTTTTAAAATTTACATTTTAACCTCCAACTTTTTACT
Found at i:45383241 original size:15 final size:15
Alignment explanation
Indices: 45383223--45383268 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
45383213 TTAAAAGTAG
*
45383223 AGAAAATAAATAAAA
1 AGAAAAAAAATAAAA
*
45383238 AGAAAAGAAA-AAAA
1 AGAAAAAAAATAAAA
45383252 AGAAAAAATAATAAAA
1 AGAAAAAA-AATAAAA
45383268 A
1 A
45383269 TATAAAAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
14 11 0.41
15 11 0.41
16 5 0.19
ACGTcount: A:0.83, C:0.00, G:0.09, T:0.09
Consensus pattern (15 bp):
AGAAAAAAAATAAAA
Found at i:45387489 original size:4 final size:4
Alignment explanation
Indices: 45387472--45387510 Score: 53
Period size: 4 Copynumber: 10.0 Consensus size: 4
45387462 GCATGACTAA
* *
45387472 CATT CATT -AGT CATT CATT CACT CATT CATT CATT CATT
1 CATT CATT CATT CATT CATT CATT CATT CATT CATT CATT
45387511 GTATGTACAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
3 2 0.07
4 28 0.93
ACGTcount: A:0.26, C:0.26, G:0.03, T:0.46
Consensus pattern (4 bp):
CATT
Found at i:45396006 original size:77 final size:76
Alignment explanation
Indices: 45395827--45396499 Score: 698
Period size: 77 Copynumber: 8.9 Consensus size: 76
45395817 TCCTATTTCA
* * * * * * ** *
45395827 TTTTTCAAAAATCAACTCAAAATCCGAAAGGTGAGTTAAGCATCGGGTCACACGCTAAGGT-GTT
1 TTTTTCAAAGATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTT
*
45395891 TTCAATTTATAT
66 TTCAATTT-TTT
** * * *
45395903 TTTTT-AAA-ATCAACTCATAATCCGAGAACTGAGTTGAGCCTCGGGTTGCATGCCGAGATATTT
1 TTTTTCAAAGATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTT
*
45395966 TTCTATTTCTATT
66 TTCAATTT-T-TT
* * * * * *
45395979 TTTTTGAAA-ATTAACTCATAATTCGAGAGGTGAGTTGAGCCTCGGGTCGCATGCTGAGATATTT
1 TTTTTCAAAGATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTT
*
45396043 TTCAATTTTTG
66 TTCAATTTTTT
* * *
45396054 TTTTTCAAAGATCAACTCATAGTCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGAGGT-GTT
1 TTTTTCAAAGATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTT
45396118 TTCAATTTTTGT
66 TTCAATTTTT-T
* * * ** * *
45396130 TTTTTCAAAAATCAACTCATAATCTGAGAGGTGAGTTGAACCTCAAGTCACACGCTGAGGTATAT
1 TTTTTCAAAGATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTAT-T
***
45396195 TTTCAATTTCAG
65 TTTCAATTTTTT
* * *
45396207 TTTTTCGAAA-ATCAACTCATAATCTGAGAGGTGAGTTGAGCCTGGGGTCGCATGCCGAGGTATT
1 TTTTTC-AAAGATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTA-T
* *
45396271 TTTTCTATTTTTA
64 TTTTCAATTTTTT
* * * *
45396284 TTTTTCAAAGATCGACTCATAATCCGAGAGGTGAGTTGAGCCTTGGGTCGCACGTCGAGCTATTT
1 TTTTTCAAAGATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTT
*
45396349 TT-AATTTTTC
66 TTCAATTTTTT
* * * ** *
45396359 TTTTTCAAATATCAACTCATAGTCCGAGAGGTGAGTTGAGCCTCAGGTCGCACGTGGAGCTA-TT
1 TTTTTCAAAGATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTT
*
45396423 TT-ATATTTTTG
66 TTCA-ATTTTTT
* * * *
45396434 TTTTTCAAAGATCAACCCATAATCCGAGAGATGAGTTGAGCCTCGGGTTGCACGCCGAGGAATTT
1 TTTTTCAAAGATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTT
45396499 T
66 T
45396500 AAATTTCAGT
Statistics
Matches: 506, Mismatches: 79, Indels: 24
0.83 0.13 0.04
Matches are distributed among these distances:
74 44 0.09
75 154 0.30
76 123 0.24
77 171 0.34
78 14 0.03
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (76 bp):
TTTTTCAAAGATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTT
TTCAATTTTTT
Found at i:45396245 original size:229 final size:229
Alignment explanation
Indices: 45395826--45396492 Score: 780
Period size: 229 Copynumber: 2.9 Consensus size: 229
45395816 TTCCTATTTC
* * * * * * *
45395826 ATTTTTCAAAAATCAACTCAAAATCCGAAAGGTGAGTTAAGCATCGGGTCACACGCTAAGGTGTT
1 ATTTTTCAAAGATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTGTT
* ** * * *
45395891 TTCAATTTATATTTTTT--AAAATCAACTCATAATCCGAGAACTGAGTTGAGCCTCGGGTTGCAT
66 TTCAATTT-TTTTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCAGGTCGCAC
* * * * * *
45395954 GCCGAGATAT-TTTTCTATTTCTATTTTTTTGAAAATTAACTCATAAT-TCGAGAGGTGAGTTGA
130 GCTGAGGTATATTTTCAATTTC-AGTTTTTCGAAAATCAACTCATAATCT-GAGAGGTGAGTTGA
*
45396017 GCCTCGGGTCGCATGCTGAGATA-TTTTTCAATTTTT
193 GCCTCGGGTCGCATGCCGAGATATTTTTTCAATTTTT
* *
45396053 GTTTTTCAAAGATCAACTCATAGTCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTGTT
1 ATTTTTCAAAGATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTGTT
* * * *
45396118 TTCAATTTTTGTTTTTTCAAAAATCAACTCATAATCTGAGAGGTGAGTTGAACCTCAAGTCACAC
66 TTCAATTTTT-TTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCAGGTCGCAC
45396183 GCTGAGGTATATTTTCAATTTCAGTTTTTCGAAAATCAACTCATAATCTGAGAGGTGAGTTGAGC
130 GCTGAGGTATATTTTCAATTTCAGTTTTTCGAAAATCAACTCATAATCTGAGAGGTGAGTTGAGC
* * *
45396248 CTGGGGTCGCATGCCGAGGTATTTTTTCTATTTTT
195 CTCGGGTCGCATGCCGAGATATTTTTTCAATTTTT
* * * *
45396283 ATTTTTCAAAGATCGACTCATAATCCGAGAGGTGAGTTGAGCCTTGGGTCGCACG-TCGAGCTAT
1 ATTTTTCAAAGATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCT-GAGGTGT
* * * *
45396347 TTTTAATTTTTCTTTTTCAAATATCAACTCATAGTCCGAGAGGTGAGTTGAGCCTCAGGTCGCAC
65 TTTCAATTTTTTTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCAGGTCGCAC
* ** * * *
45396412 G-TG-GAG-CTATTTT-ATATTTTTGTTTTTC-AAAGATCAACCCATAATCCGAGAGATGAGTTG
130 GCTGAG-GTATATTTTCA-ATTTCAGTTTTTCGAAA-ATCAACTCATAATCTGAGAGGTGAGTTG
* *
45396472 AGCCTCGGGTTGCACGCCGAG
192 AGCCTCGGGTCGCATGCCGAG
45396493 GAATTTTAAA
Statistics
Matches: 378, Mismatches: 52, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
226 5 0.01
227 131 0.35
228 3 0.01
229 150 0.40
230 89 0.24
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.34
Consensus pattern (229 bp):
ATTTTTCAAAGATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTGTT
TTCAATTTTTTTTTTTCAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCAGGTCGCACG
CTGAGGTATATTTTCAATTTCAGTTTTTCGAAAATCAACTCATAATCTGAGAGGTGAGTTGAGCC
TCGGGTCGCATGCCGAGATATTTTTTCAATTTTT
Found at i:45397051 original size:29 final size:29
Alignment explanation
Indices: 45396998--45397128 Score: 120
Period size: 29 Copynumber: 4.5 Consensus size: 29
45396988 ACAAAAACTA
* *
45396998 AAAATATACATTTTTACCCCTTAACTTTTT
1 AAAATTTACATTTTAACCCC-TAACTTTTT
45397028 AAAATTTACATTTTAACCCCTAACTTTTT
1 AAAATTTACATTTTAACCCCTAACTTTTT
** ** * *
45397057 ACTATTTACATTTTGTCCCTTAACTTTCCT
1 AAAATTTACATTTTAACCCCTAACTTT-TT
* * *
45397087 AAAA-TTAAATTTTAACCCCCAATTTTTT
1 AAAATTTACATTTTAACCCCTAACTTTTT
**
45397115 ACTATTTACATTTT
1 AAAATTTACATTTT
45397129 GATCCCCCAA
Statistics
Matches: 79, Mismatches: 20, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
28 3 0.04
29 55 0.70
30 21 0.27
ACGTcount: A:0.31, C:0.21, G:0.01, T:0.47
Consensus pattern (29 bp):
AAAATTTACATTTTAACCCCTAACTTTTT
Found at i:45397080 original size:58 final size:59
Alignment explanation
Indices: 45397004--45397134 Score: 185
Period size: 58 Copynumber: 2.2 Consensus size: 59
45396994 ACTAAAAATA
* * * * *
45397004 TACATTTTTACCCCTTAACTTT-TTAAAATTTACATTTTAACCCCTAACTTTTTACTATT
1 TACATTTTGATCCCTTAACTTTCCTAAAA-TTAAATTTTAACCCCCAACTTTTTACTATT
*
45397063 TACATTTTG-TCCCTTAACTTTCCTAAAATTAAATTTTAACCCCCAATTTTTTACTATT
1 TACATTTTGATCCCTTAACTTTCCTAAAATTAAATTTTAACCCCCAACTTTTTACTATT
45397121 TACATTTTGATCCC
1 TACATTTTGATCCC
45397135 CCAACTGCTA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
58 47 0.73
59 17 0.27
ACGTcount: A:0.28, C:0.23, G:0.02, T:0.47
Consensus pattern (59 bp):
TACATTTTGATCCCTTAACTTTCCTAAAATTAAATTTTAACCCCCAACTTTTTACTATT
Found at i:45397551 original size:5 final size:5
Alignment explanation
Indices: 45397541--45397594 Score: 51
Period size: 5 Copynumber: 11.2 Consensus size: 5
45397531 TTAAAAGTAG
* *
45397541 AGAAA AGAAA AGAAAA AGAAA GGAAA AG-AA A-AAA AG-AA AGGAA AGAAA
1 AGAAA AGAAA AG-AAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA
*
45397589 GGAAA A
1 AGAAA A
45397595 AAATAATAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
4 10 0.25
5 25 0.62
6 5 0.12
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:45397580 original size:22 final size:21
Alignment explanation
Indices: 45397541--45397597 Score: 71
Period size: 22 Copynumber: 2.7 Consensus size: 21
45397531 TTAAAAGTAG
*
45397541 AGAAAAGAAAAGAAAAA-GAA
1 AGAAAAGAAAAAAAAAAGGAA
45397561 AGGAAAAGAAAAAAAGAAAGGAA
1 A-GAAAAGAAAAAAA-AAAGGAA
*
45397584 AGAAAGGAAAAAAA
1 AGAAAAGAAAAAAA
45397598 TAATAATATA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 1 0.03
21 12 0.38
22 15 0.47
23 4 0.12
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (21 bp):
AGAAAAGAAAAAAAAAAGGAA
Found at i:45397585 original size:17 final size:18
Alignment explanation
Indices: 45397541--45397588 Score: 66
Period size: 16 Copynumber: 2.8 Consensus size: 18
45397531 TTAAAAGTAG
*
45397541 AGAAAAGAAAAG--AAAA
1 AGAAAGGAAAAGAAAAAA
45397557 AGAAAGGAAAAGAAAAAA
1 AGAAAGGAAAAGAAAAAA
45397575 AGAAAGG-AAAGAAA
1 AGAAAGGAAAAGAAA
45397589 GGAAAAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 11 0.38
17 7 0.24
18 11 0.38
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (18 bp):
AGAAAGGAAAAGAAAAAA
Found at i:45403202 original size:43 final size:43
Alignment explanation
Indices: 45403110--45403204 Score: 138
Period size: 43 Copynumber: 2.2 Consensus size: 43
45403100 GTTTATGTGG
*
45403110 AAAAACGCCGCTATAGAACATGGCCTTTAGCAGCGCTTTTTCC
1 AAAAACGCCGCTATAGAACATGACCTTTAGCAGCGCTTTTTCC
* * *
45403153 ACAAACGCCGCTATAGGACATGACCTTTAGCGGCGC-TTTTCC
1 AAAAACGCCGCTATAGAACATGACCTTTAGCAGCGCTTTTTCC
45403195 TAAAAACGCC
1 -AAAAACGCC
45403205 ACTAAAGGTC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
42 6 0.13
43 40 0.87
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.23
Consensus pattern (43 bp):
AAAAACGCCGCTATAGAACATGACCTTTAGCAGCGCTTTTTCC
Found at i:45403225 original size:43 final size:43
Alignment explanation
Indices: 45403110--45403217 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 43
45403100 GTTTATGTGG
* * * *
45403110 AAAAACGCCGCTATAGAACATGGCCTTTAGCAGCGCTTTTTCC
1 AAAAACGCCACTAAAGGACATGACCTTTAGCAGCGCTTTTTCC
* * * *
45403153 ACAAACGCCGCTATAGGACATGACCTTTAGCGGCGC-TTTTCC
1 AAAAACGCCACTAAAGGACATGACCTTTAGCAGCGCTTTTTCC
*
45403195 TAAAAACGCCACTAAAGGTCATG
1 -AAAAACGCCACTAAAGGACATG
45403218 TTCTTTAGTG
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 6 0.11
43 50 0.89
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (43 bp):
AAAAACGCCACTAAAGGACATGACCTTTAGCAGCGCTTTTTCC
Found at i:45403672 original size:66 final size:65
Alignment explanation
Indices: 45403573--45403703 Score: 158
Period size: 66 Copynumber: 2.0 Consensus size: 65
45403563 CTGAAGTTAC
* * *
45403573 AGCTGGAGTTCGTCATATTTTCTGCTTGTCTCTACTTCCCT-TACTGCTGTCTCCACTTTAAGTT
1 AGCTGGAGTTCGTCATATTTTCT-CTTGCCTCTACTTCCCTCGA-TGCTGCCTCCACTTTAAGTT
45403637 GT
64 GT
* * *
45403639 AGCTGGAGTTCTTCATATTTTCT-TTGAGCCTCTACTTCTCTCGATGTTGCCTCCACTTTAAGTT
1 AGCTGGAGTTCGTCATATTTTCTCTT--GCCTCTACTTCCCTCGATGCTGCCTCCACTTTAAGTT
45403703 G
64 G
45403704 AGCAATTTGC
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
64 2 0.04
66 53 0.95
67 1 0.02
ACGTcount: A:0.15, C:0.25, G:0.17, T:0.44
Consensus pattern (65 bp):
AGCTGGAGTTCGTCATATTTTCTCTTGCCTCTACTTCCCTCGATGCTGCCTCCACTTTAAGTTGT
Found at i:45403781 original size:13 final size:13
Alignment explanation
Indices: 45403763--45403787 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45403753 AACCTCTAAA
45403763 CTTCAGCTTGAGC
1 CTTCAGCTTGAGC
45403776 CTTCAGCTTGAG
1 CTTCAGCTTGAG
45403788 TCTGATTCCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.28, G:0.24, T:0.32
Consensus pattern (13 bp):
CTTCAGCTTGAGC
Found at i:45409076 original size:7 final size:7
Alignment explanation
Indices: 45409066--45409090 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
45409056 AGATAATACA
45409066 TATCAAG
1 TATCAAG
45409073 TATCAAG
1 TATCAAG
45409080 TATCAAG
1 TATCAAG
45409087 TATC
1 TATC
45409091 TAATGGGTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (7 bp):
TATCAAG
Found at i:45409153 original size:9 final size:9
Alignment explanation
Indices: 45409139--45409278 Score: 132
Period size: 9 Copynumber: 16.0 Consensus size: 9
45409129 CAAGTATAGT
45409139 TAAGTTATG
1 TAAGTTATG
45409148 TAAGTTATG
1 TAAGTTATG
* * *
45409157 ATATGATATA
1 -TAAGTTATG
*
45409167 T-ATTTATG
1 TAAGTTATG
45409175 TAAGTTATG
1 TAAGTTATG
45409184 TAAGTTATG
1 TAAGTTATG
*
45409193 -ATA-TGATG
1 TA-AGTTATG
*
45409201 TATATTTATG
1 TA-AGTTATG
45409211 T-A-TTATG
1 TAAGTTATG
45409218 TAAGTTATG
1 TAAGTTATG
45409227 TAAGTTATG
1 TAAGTTATG
*
45409236 TAGGTTATG
1 TAAGTTATG
45409245 TAAGTTATG
1 TAAGTTATG
45409254 T-A-TTATG
1 TAAGTTATG
45409261 TAAGTTATG
1 TAAGTTATG
*
45409270 TATGTTATG
1 TAAGTTATG
45409279 ATCCAAAGTT
Statistics
Matches: 109, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
7 12 0.11
8 13 0.12
9 73 0.67
10 11 0.10
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (9 bp):
TAAGTTATG
Found at i:45409181 original size:36 final size:36
Alignment explanation
Indices: 45409139--45409255 Score: 159
Period size: 36 Copynumber: 3.3 Consensus size: 36
45409129 CAAGTATAGT
45409139 TAAGTTATGTAAGTTATGATATGATATATATTTATG
1 TAAGTTATGTAAGTTATGATATGATATATATTTATG
*
45409175 TAAGTTATGTAAGTTATGATATGATGTATATTTATG
1 TAAGTTATGTAAGTTATGATATGATATATATTTATG
* * * *
45409211 T-A-TTATGTAAGTTATG-TAAGTTATGTAGGTTATG
1 TAAGTTATGTAAGTTATGATATGATATATA-TTTATG
45409245 TAAGTTATGTA
1 TAAGTTATGTA
45409256 TTATGTAAGT
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
33 7 0.10
34 20 0.28
35 2 0.03
36 43 0.60
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (36 bp):
TAAGTTATGTAAGTTATGATATGATATATATTTATG
Found at i:45409222 original size:43 final size:43
Alignment explanation
Indices: 45409170--45409280 Score: 163
Period size: 43 Copynumber: 2.6 Consensus size: 43
45409160 TGATATATAT
*
45409170 TTATGTAAGTTATGTAAGTTATGATA-TGATGTATATTTATGTA
1 TTATGTAAGTTATGTAAGTTATGATAGTGATGTA-AGTTATGTA
*
45409213 TTATGTAAGTTATGTAAGTTATG-TAGGTTATGTAAGTTATGTA
1 TTATGTAAGTTATGTAAGTTATGATA-GTGATGTAAGTTATGTA
*
45409256 TTATGTAAGTTATGTATGTTATGAT
1 TTATGTAAGTTATGTAAGTTATGAT
45409281 CCAAAGTTTT
Statistics
Matches: 62, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
42 2 0.03
43 53 0.85
44 7 0.11
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.49
Consensus pattern (43 bp):
TTATGTAAGTTATGTAAGTTATGATAGTGATGTAAGTTATGTA
Found at i:45409244 original size:34 final size:34
Alignment explanation
Indices: 45409206--45409278 Score: 105
Period size: 34 Copynumber: 2.1 Consensus size: 34
45409196 TGATGTATAT
45409206 TTATGT-A-TTATGTAAGTTATGTAAGTTATGTAGG
1 TTATGTAAGTTATGT-A-TTATGTAAGTTATGTAGG
*
45409240 TTATGTAAGTTATGTATTATGTAAGTTATGTATG
1 TTATGTAAGTTATGTATTATGTAAGTTATGTAGG
45409274 TTATG
1 TTATG
45409279 ATCCAAAGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
34 28 0.78
35 2 0.06
36 6 0.17
ACGTcount: A:0.29, C:0.00, G:0.22, T:0.49
Consensus pattern (34 bp):
TTATGTAAGTTATGTATTATGTAAGTTATGTAGG
Found at i:45409337 original size:35 final size:35
Alignment explanation
Indices: 45409298--45409364 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
45409288 TTTTTTTATT
*
45409298 CTTTAAATGTTTATGTAAGTTATGATAATCATAAA
1 CTTTAAATGTTTATGTAAGATATGATAATCATAAA
*
45409333 CTTTAAATGTTTATGTAAGATATGATTATCAT
1 CTTTAAATGTTTATGTAAGATATGATAATCAT
45409365 CTTTAAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.37, C:0.06, G:0.12, T:0.45
Consensus pattern (35 bp):
CTTTAAATGTTTATGTAAGATATGATAATCATAAA
Found at i:45409383 original size:13 final size:13
Alignment explanation
Indices: 45409365--45409391 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
45409355 TGATTATCAT
45409365 CTTTAAATTTTAA
1 CTTTAAATTTTAA
45409378 CTTTAAATTTTAA
1 CTTTAAATTTTAA
45409391 C
1 C
45409392 CCTTTAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (13 bp):
CTTTAAATTTTAA
Found at i:45410441 original size:21 final size:22
Alignment explanation
Indices: 45410416--45410461 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 22
45410406 TTTGCAAATA
*
45410416 AAATAT-GAGAATGAAGCCTTT
1 AAATATAGACAATGAAGCCTTT
*
45410437 AAATATAGGACAATGAAGGCTTT
1 AAATATA-GACAATGAAGCCTTT
45410460 AA
1 AA
45410462 CAGTTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.29
23 15 0.71
ACGTcount: A:0.46, C:0.09, G:0.20, T:0.26
Consensus pattern (22 bp):
AAATATAGACAATGAAGCCTTT
Found at i:45410519 original size:12 final size:12
Alignment explanation
Indices: 45410502--45410532 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
45410492 CAATAGCATG
45410502 CTCCATTCTCAA
1 CTCCATTCTCAA
*
45410514 CTCCATTCTCAC
1 CTCCATTCTCAA
45410526 CTCCATT
1 CTCCATT
45410533 TATAACTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.19, C:0.45, G:0.00, T:0.35
Consensus pattern (12 bp):
CTCCATTCTCAA
Found at i:45419076 original size:41 final size:41
Alignment explanation
Indices: 45419016--45419135 Score: 141
Period size: 41 Copynumber: 2.9 Consensus size: 41
45419006 TTTAAGGCGT
* * *
45419016 TAAACGCCACTACTGCTTGACCTTTTACGGCGTTTTTCTCA
1 TAAACACCGCTACTGCTTGACCTTTTGCGGCGTTTTTCTCA
** * * *
45419057 TAAACATTGCTACTACTTGATCTTTTGTGGCGTTTTTCTCA
1 TAAACACCGCTACTGCTTGACCTTTTGCGGCGTTTTTCTCA
** *
45419098 TAAATGCCGCTACTGCTTGACCTATTGCGGCGTTTTTC
1 TAAACACCGCTACTGCTTGACCTTTTGCGGCGTTTTTC
45419136 CGTTAGCGCC
Statistics
Matches: 63, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
41 63 1.00
ACGTcount: A:0.18, C:0.25, G:0.17, T:0.40
Consensus pattern (41 bp):
TAAACACCGCTACTGCTTGACCTTTTGCGGCGTTTTTCTCA
Found at i:45419317 original size:30 final size:31
Alignment explanation
Indices: 45419283--45419345 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
45419273 TTGTTGGAAA
* *
45419283 CATTTTCAGGTG-AAATCAGAAAAACGCTTC
1 CATTTTCAAGTGAAAATCAGAAAAACACTTC
45419313 CATTTTCAAGTGAAAATCAGAAAAACACTTC
1 CATTTTCAAGTGAAAATCAGAAAAACACTTC
45419344 CA
1 CA
45419346 CCTTGTAGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 11 0.37
31 19 0.63
ACGTcount: A:0.41, C:0.21, G:0.13, T:0.25
Consensus pattern (31 bp):
CATTTTCAAGTGAAAATCAGAAAAACACTTC
Found at i:45422403 original size:17 final size:18
Alignment explanation
Indices: 45422369--45422404 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
45422359 TTATTTTTCA
*
45422369 TTATTAAATTATAAAAAT
1 TTATTAAAATATAAAAAT
45422387 TTATTAAAATA-AAAAAT
1 TTATTAAAATATAAAAAT
45422404 T
1 T
45422405 GATGTTTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TTATTAAAATATAAAAAT
Found at i:45425228 original size:19 final size:19
Alignment explanation
Indices: 45425200--45425239 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
45425190 TAGCTACAGA
*
45425200 ATTAAAACAATTAAAATTC
1 ATTAAAACAATAAAAATTC
*
45425219 ATTAATACAATAAAAATTC
1 ATTAAAACAATAAAAATTC
45425238 AT
1 AT
45425240 ATTGAATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (19 bp):
ATTAAAACAATAAAAATTC
Found at i:45426358 original size:29 final size:29
Alignment explanation
Indices: 45426321--45426376 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
45426311 TAATAATATA
45426321 ATATATTTTAAATATAAAA-TGATATTTTC
1 ATATATTTTAAAT-TAAAATTGATATTTTC
* **
45426350 ATATTTTTTTCATTAAAATTGATATTT
1 ATATATTTTAAATTAAAATTGATATTT
45426377 GATTGACTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 5 0.22
29 18 0.78
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.54
Consensus pattern (29 bp):
ATATATTTTAAATTAAAATTGATATTTTC
Found at i:45426875 original size:21 final size:19
Alignment explanation
Indices: 45426810--45426903 Score: 152
Period size: 19 Copynumber: 4.8 Consensus size: 19
45426800 AATTTTTGAG
45426810 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
45426829 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
45426848 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
45426867 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
45426888 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
45426904 AGATATGATT
Statistics
Matches: 70, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
19 51 0.73
21 19 0.27
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:45426885 original size:40 final size:38
Alignment explanation
Indices: 45426810--45426910 Score: 152
Period size: 40 Copynumber: 2.7 Consensus size: 38
45426800 AATTTTTGAG
45426810 GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
*
45426848 GATATGCAATCTTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATG--ATATGCAATCCTAGATAT
*
45426888 GATATGTAATCTTAGA-A-GATATG
1 GATATGCAATCTTAGATATGATATG
45426911 ATTTTGTAAT
Statistics
Matches: 59, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
36 5 0.08
38 21 0.36
39 1 0.02
40 32 0.54
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.36
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
Found at i:45426922 original size:23 final size:22
Alignment explanation
Indices: 45426842--45426926 Score: 81
Period size: 21 Copynumber: 4.0 Consensus size: 22
45426832 ATGCAATCCT
*
45426842 AGATATGATATGCAATCTTAG-
1 AGATATGATATGTAATCTTAGA
* *
45426863 ATATGAT-ATATGCAATCTT---
1 AGAT-ATGATATGTAATCTTAGA
45426882 AGATATGATATGTAATCTTAGA
1 AGATATGATATGTAATCTTAGA
*
45426904 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGTAATCTTAGA
45426927 GATTTAATTT
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
18 2 0.04
19 14 0.26
21 15 0.28
22 10 0.19
23 13 0.24
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.39
Consensus pattern (22 bp):
AGATATGATATGTAATCTTAGA
Found at i:45426936 original size:22 final size:23
Alignment explanation
Indices: 45426892--45426936 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
45426882 AGATATGATA
*
45426892 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
45426915 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
45426937 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:45427500 original size:25 final size:25
Alignment explanation
Indices: 45427449--45427500 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
45427439 AATTTTTTTA
**
45427449 ATGTAATTATTATTATTATTTTCAT
1 ATGTAATTATTATTATTATTAGCAT
45427474 ATGTAATTATTATTATT-TTAGCTAT
1 ATGTAATTATTATTATTATTAGC-AT
45427499 AT
1 AT
45427501 ATATATGTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 3 0.12
25 21 0.88
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.58
Consensus pattern (25 bp):
ATGTAATTATTATTATTATTAGCAT
Found at i:45427603 original size:33 final size:30
Alignment explanation
Indices: 45427566--45427626 Score: 77
Period size: 33 Copynumber: 1.9 Consensus size: 30
45427556 TTTTCGCATA
*
45427566 TTTATTTTCTTAATATGAGGTAATTATTTTTAT
1 TTTATTTTATTAATAT-A--TAATTATTTTTAT
*
45427599 TTTATTTTATTTATATATAATTATTTTT
1 TTTATTTTATTAATATATAATTATTTTT
45427627 TTATAATCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 11 0.42
32 1 0.04
33 14 0.54
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.66
Consensus pattern (30 bp):
TTTATTTTATTAATATATAATTATTTTTAT
Found at i:45428107 original size:19 final size:20
Alignment explanation
Indices: 45428066--45428107 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
45428056 ATTTCTAGGC
* *
45428066 CATTGTAATATTTATTATTG
1 CATTGTAATATTTAATATAG
45428086 CATTGT-ATATTTAATATAG
1 CATTGTAATATTTAATATAG
45428105 CAT
1 CAT
45428108 CACATCATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.50
Consensus pattern (20 bp):
CATTGTAATATTTAATATAG
Found at i:45428462 original size:98 final size:98
Alignment explanation
Indices: 45428346--45428542 Score: 349
Period size: 98 Copynumber: 2.0 Consensus size: 98
45428336 TTAAAAATAA
* * *
45428346 TAAAGGAAATATTTCGAGTTTGGGATTTTAAAGGAATTATGTCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATCATGCCCTAACGTATTGGGTGTGATTTC
45428411 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
* *
45428444 TAAAGGAAATATTCCGAGTTTGGGATTTTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATCATGCCCTAACGTATTGGGTGTGATTTC
45428509 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
45428542 T
1 T
45428543 TTTATTGCAC
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.28, C:0.09, G:0.24, T:0.39
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATCATGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:45434167 original size:22 final size:22
Alignment explanation
Indices: 45434139--45434193 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
45434129 AATAGATTAT
*
45434139 TATTATTAAATTTTAAT-GTGAC
1 TATTATTAAATTATAATAG-GAC
* *
45434161 TATTATTTAATTATAATAGGAT
1 TATTATTAAATTATAATAGGAC
45434183 TATTATTAAAT
1 TATTATTAAAT
45434194 ATTTTATATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 27 0.96
23 1 0.04
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.51
Consensus pattern (22 bp):
TATTATTAAATTATAATAGGAC
Found at i:45434218 original size:23 final size:25
Alignment explanation
Indices: 45434171--45434248 Score: 81
Period size: 23 Copynumber: 3.2 Consensus size: 25
45434161 TATTATTTAA
*
45434171 TTATAATAGGATTATTATT-AAATATT
1 TTATAATA-AATTA-TATTAAAATATT
* * *
45434197 TTATATTAATTTA-ATT-TAATATT
1 TTATAATAAATTATATTAAAATATT
45434220 TTATAATAAATTATATTAAAATATT
1 TTATAATAAATTATATTAAAATATT
45434245 TTAT
1 TTAT
45434249 TTTTTTATTT
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
23 20 0.47
24 3 0.07
25 13 0.30
26 7 0.16
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (25 bp):
TTATAATAAATTATATTAAAATATT
Found at i:45441849 original size:40 final size:40
Alignment explanation
Indices: 45441734--45441858 Score: 116
Period size: 40 Copynumber: 3.1 Consensus size: 40
45441724 AAGTTATACT
*
45441734 TTCTGTTTGGCGTGA-TTCGAA-TGGATCAA-CTCTTATGAGC
1 TTCTGTTTGGCAT-ATTTC-AAGTGGA-CAAGCTCTTATGAGC
* * *
45441774 TTATG-TTGGCATGTTTCAAGTGGACCAGCTCTTATGAGC
1 TTCTGTTTGGCATATTTCAAGTGGACAAGCTCTTATGAGC
* * *
45441813 TTCTGTTTGGCATATTT-ACGTTGGATAAGCTTTTATGAGC
1 TTCTGTTTGGCATATTTCAAG-TGGACAAGCTCTTATGAGC
45441853 TTCTGT
1 TTCTGT
45441859 CTGGTGTGTT
Statistics
Matches: 70, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
38 4 0.06
39 30 0.43
40 36 0.51
ACGTcount: A:0.19, C:0.16, G:0.24, T:0.41
Consensus pattern (40 bp):
TTCTGTTTGGCATATTTCAAGTGGACAAGCTCTTATGAGC
Found at i:45444675 original size:15 final size:14
Alignment explanation
Indices: 45444639--45444678 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
45444629 AATGTAAGTG
45444639 ATTAAAATATAAAA
1 ATTAAAATATAAAA
* *
45444653 TTTTAAATATAAATA
1 ATTAAAATATAAA-A
45444668 ATTAAAATATA
1 ATTAAAATATA
45444679 GTATGAGACA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
14 11 0.52
15 10 0.48
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
ATTAAAATATAAAA
Found at i:45448794 original size:19 final size:19
Alignment explanation
Indices: 45448747--45448784 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
45448737 AAATTTCTCA
45448747 ATTACTTTTGTTTAAGATT
1 ATTACTTTTGTTTAAGATT
45448766 ATTACTTTTGTTTAAGATT
1 ATTACTTTTGTTTAAGATT
45448785 TTTTGTTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.05, G:0.11, T:0.58
Consensus pattern (19 bp):
ATTACTTTTGTTTAAGATT
Found at i:45452494 original size:13 final size:13
Alignment explanation
Indices: 45452476--45452519 Score: 51
Period size: 11 Copynumber: 3.7 Consensus size: 13
45452466 ATTAATAAAC
45452476 ATTCTGTAGGAAT
1 ATTCTGTAGGAAT
45452489 ATTCTGTA--AAT
1 ATTCTGTAGGAAT
45452500 ATT-T-TAGGAAT
1 ATTCTGTAGGAAT
*
45452511 ATTTTGTAG
1 ATTCTGTAG
45452520 ATATTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
9 2 0.07
10 1 0.04
11 12 0.44
12 1 0.04
13 11 0.41
ACGTcount: A:0.32, C:0.05, G:0.18, T:0.45
Consensus pattern (13 bp):
ATTCTGTAGGAAT
Found at i:45452507 original size:22 final size:22
Alignment explanation
Indices: 45452482--45452526 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
45452472 AAACATTCTG
45452482 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
45452504 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
45452526 T
1 T
45452527 TTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:45457111 original size:22 final size:22
Alignment explanation
Indices: 45457083--45457127 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
45457073 AGGGGGAGTG
45457083 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
45457105 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
45457127 T
1 T
45457128 TTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:45458035 original size:3 final size:3
Alignment explanation
Indices: 45458027--45458059 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
45458017 ATTTTCTTAC
45458027 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
45458060 TGCATGTAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:45464573 original size:24 final size:24
Alignment explanation
Indices: 45464546--45464594 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
45464536 AAAGAAGTAA
45464546 GATTATAAGATAAGAACATAAGGC
1 GATTATAAGATAAGAACATAAGGC
*
45464570 GATTATAAGATAGGAACATAAGGC
1 GATTATAAGATAAGAACATAAGGC
45464594 G
1 G
45464595 TGTGAGTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.47, C:0.08, G:0.24, T:0.20
Consensus pattern (24 bp):
GATTATAAGATAAGAACATAAGGC
Found at i:45473829 original size:20 final size:20
Alignment explanation
Indices: 45473791--45473830 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
45473781 CTTGTTTTCA
*
45473791 AGTAGTTTTAGTGTCTTTTT
1 AGTAGTTTTAGTGTATTTTT
*
45473811 AGTAGTTTTA-TGTAATTTT
1 AGTAGTTTTAGTGTATTTTT
45473830 A
1 A
45473831 ATTTGTACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.23, C:0.03, G:0.17, T:0.57
Consensus pattern (20 bp):
AGTAGTTTTAGTGTATTTTT
Found at i:45477290 original size:30 final size:31
Alignment explanation
Indices: 45477244--45477301 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
45477234 GAAATGATAG
* *
45477244 CAAAATAGTGAAAAAAATAAGAAAATAGCAA
1 CAAAACAGTGAAAAAAACAAGAAAATAGCAA
45477275 CAAAACAGT-AAAAAAACAAGAAAATAG
1 CAAAACAGTGAAAAAAACAAGAAAATAG
45477302 TACAAAAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 17 0.68
31 8 0.32
ACGTcount: A:0.69, C:0.09, G:0.12, T:0.10
Consensus pattern (31 bp):
CAAAACAGTGAAAAAAACAAGAAAATAGCAA
Found at i:45477298 original size:19 final size:20
Alignment explanation
Indices: 45477276--45477313 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
45477266 AAATAGCAAC
45477276 AAAACAGTA-AAAAAACAAG
1 AAAACAGTACAAAAAACAAG
*
45477295 AAAATAGTACAAAAAACAA
1 AAAACAGTACAAAAAACAA
45477314 TAGTTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.74, C:0.11, G:0.08, T:0.08
Consensus pattern (20 bp):
AAAACAGTACAAAAAACAAG
Found at i:45482716 original size:19 final size:19
Alignment explanation
Indices: 45482692--45482731 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
45482682 AAAATATCAT
45482692 ATTAATTTTAATTGATTTG
1 ATTAATTTTAATTGATTTG
* *
45482711 ATTAATTTTATTTTATTTG
1 ATTAATTTTAATTGATTTG
45482730 AT
1 AT
45482732 CAAAATTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.62
Consensus pattern (19 bp):
ATTAATTTTAATTGATTTG
Found at i:45483909 original size:15 final size:14
Alignment explanation
Indices: 45483887--45483922 Score: 63
Period size: 15 Copynumber: 2.5 Consensus size: 14
45483877 GCTATGCATG
45483887 CAAAATATAAAAGA
1 CAAAATATAAAAGA
45483901 CATAAATATAAAAGA
1 CA-AAATATAAAAGA
45483916 CAAAATA
1 CAAAATA
45483923 GTGAAATTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.69, C:0.08, G:0.06, T:0.17
Consensus pattern (14 bp):
CAAAATATAAAAGA
Found at i:45492554 original size:6 final size:6
Alignment explanation
Indices: 45492543--45492572 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
45492533 TAATATAAGG
45492543 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA
45492573 TGAAGGGTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:45501819 original size:20 final size:20
Alignment explanation
Indices: 45501796--45501842 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
45501786 GTAGACGAGA
45501796 TGCCAGTAATGCAGATAAAC
1 TGCCAGTAATGCAGATAAAC
*
45501816 TGCCAGTATTGCAGATAAAC
1 TGCCAGTAATGCAGATAAAC
45501836 TGCCAGT
1 TGCCAGT
45501843 TGCAAACAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.23
Consensus pattern (20 bp):
TGCCAGTAATGCAGATAAAC
Found at i:45507194 original size:18 final size:18
Alignment explanation
Indices: 45507173--45507214 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
45507163 GAAACATTTA
*
45507173 TTTTAATG-ATTTTAGTAT
1 TTTTAATGTATTATA-TAT
*
45507191 TTTTGATGTATTATATAT
1 TTTTAATGTATTATATAT
45507209 TTTTAA
1 TTTTAA
45507215 AAATTATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.62
Consensus pattern (18 bp):
TTTTAATGTATTATATAT
Found at i:45507577 original size:40 final size:40
Alignment explanation
Indices: 45507487--45507598 Score: 129
Period size: 40 Copynumber: 2.8 Consensus size: 40
45507477 ACACACCAGT
*
45507487 TTGTGGACAAGCCACCAGTAATGCAGAAAAACTGCTAGAA
1 TTGTGGACAAGCCACCAGTAATGCAGAAAAACTACTAGAA
* * * *
45507527 TTGTGTACAAGCCACTAGTATTGCA-AAAGAGCTACTAGTAA
1 TTGTGGACAAGCCACCAGTAATGCAGAAA-AACTACTAG-AA
* *
45507568 -TGTGGACAAGCCACCAATAATGCAGATAAAC
1 TTGTGGACAAGCCACCAGTAATGCAGAAAAAC
45507599 AGCCAATATT
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
39 3 0.05
40 51 0.88
41 4 0.07
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.21
Consensus pattern (40 bp):
TTGTGGACAAGCCACCAGTAATGCAGAAAAACTACTAGAA
Found at i:45509223 original size:9 final size:9
Alignment explanation
Indices: 45509209--45509257 Score: 71
Period size: 9 Copynumber: 5.4 Consensus size: 9
45509199 GTAGTGATTC
45509209 AATTCGGTT
1 AATTCGGTT
*
45509218 AATTCGGGT
1 AATTCGGTT
*
45509227 AATTCGGGT
1 AATTCGGTT
*
45509236 AATTTGGTT
1 AATTCGGTT
45509245 AATTCGGTT
1 AATTCGGTT
45509254 AATT
1 AATT
45509258 TTTAACCAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.24, C:0.08, G:0.24, T:0.43
Consensus pattern (9 bp):
AATTCGGTT
Found at i:45510822 original size:16 final size:16
Alignment explanation
Indices: 45510789--45510822 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
45510779 TGTTTTTGTT
* *
45510789 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
45510805 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
45510821 AA
1 AA
45510823 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:45513656 original size:21 final size:21
Alignment explanation
Indices: 45513622--45513662 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
45513612 AGACGAGCAA
* * *
45513622 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTAGAGTG
45513643 TACTCCAAAACAGGTAGAGT
1 TACTCCAAAACAGGTAGAGT
45513663 TTGAGCAGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTAGAGTG
Found at i:45515600 original size:16 final size:16
Alignment explanation
Indices: 45515567--45515600 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
45515557 GGAGATTGTT
* *
45515567 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
45515583 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
45515599 AA
1 AA
45515601 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:45517919 original size:21 final size:21
Alignment explanation
Indices: 45517878--45517920 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
45517868 TTTAATATAT
*
45517878 TAATTAAAATTTTACTGAATA
1 TAATTAAAATTTTACTAAATA
*
45517899 TAATTAGATATTTTA-TAAATA
1 TAATTA-AAATTTTACTAAATA
45517920 T
1 T
45517921 GAAATATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.47
Consensus pattern (21 bp):
TAATTAAAATTTTACTAAATA
Found at i:45520395 original size:3 final size:3
Alignment explanation
Indices: 45520387--45520414 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
45520377 GAGGTTACTA
45520387 GAT GAT GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT G
45520415 GAATATTGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.36, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:45524542 original size:98 final size:98
Alignment explanation
Indices: 45524373--45524567 Score: 354
Period size: 98 Copynumber: 2.0 Consensus size: 98
45524363 ATACAATAAA
*
45524373 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
45524438 CCTTTAGAATCCCAAACTCAGAATATTTCCTTT
66 CCTTTAGAATCCCAAACTCAGAATATTTCCTTT
* *
45524471 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
*
45524536 CCTTTAGAATCTCAAACTCAGAATATTTCCTT
66 CCTTTAGAATCCCAAACTCAGAATATTTCCTT
45524568 CATGATTTTT
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
CCTTTAGAATCCCAAACTCAGAATATTTCCTTT
Found at i:45525269 original size:25 final size:26
Alignment explanation
Indices: 45525239--45525288 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
45525229 ATATAAATAT
45525239 GAAAATATTC-ATTAAAAAAATATAG
1 GAAAATATTCGATTAAAAAAATATAG
* *
45525264 GAAAATATTCGTTTTAAAAAATATA
1 GAAAATATTCGATTAAAAAAATATA
45525289 TATACATGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.56, C:0.04, G:0.08, T:0.32
Consensus pattern (26 bp):
GAAAATATTCGATTAAAAAAATATAG
Found at i:45526067 original size:19 final size:19
Alignment explanation
Indices: 45526043--45526155 Score: 145
Period size: 19 Copynumber: 5.8 Consensus size: 19
45526033 AATCATATAT
*
45526043 TCTAAGATTTCATATCATA
1 TCTAAGATTGCATATCATA
** **
45526062 TCTAAGATTATATATCACC
1 TCTAAGATTGCATATCATA
45526081 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
45526100 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
**
45526121 TCTTGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
45526140 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
45526156 CTCAAAAATT
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
19 63 0.79
21 17 0.21
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:45526130 original size:40 final size:40
Alignment explanation
Indices: 45526043--45526154 Score: 165
Period size: 40 Copynumber: 2.9 Consensus size: 40
45526033 AATCATATAT
* *
45526043 TCTAAGATTTCATATCATATCTAAGATT--ATATATCACC
1 TCTAAGATTGCATATCATATCTAAGATTGCATATATCACA
*
45526081 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCATATATCACA
**
45526121 TCTTGGATTGCATATCATATCTAAGATTGCATAT
1 TCTAAGATTGCATATCATATCTAAGATTGCATAT
45526155 CCTCAAAAAT
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
38 27 0.40
40 40 0.60
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (40 bp):
TCTAAGATTGCATATCATATCTAAGATTGCATATATCACA
Found at i:45526380 original size:44 final size:43
Alignment explanation
Indices: 45526331--45526843 Score: 321
Period size: 44 Copynumber: 11.8 Consensus size: 43
45526321 TGTCATTTTC
*
45526331 AGTCTGCCTCACTGCAACTTCA-GGAGGATAAGACTTGCTTATTT
1 AGTCTG-CTCACTGCAACTTCAGGGA-GATAAGACTTGCGTATTT
*
45526375 AGTCTGCTTCACTGCAACTTCAGGGAGATAAGACTAGATGCG-ATCT
1 AGTCTGC-TCACTGCAACTTCAGGGAGATAAGACT---TGCGTATTT
* *
45526421 -G-CT-CTC-C-GCAACTTCAGAGAGATAAGATCTAAG-GT-TTT
1 AGTCTGCTCACTGCAACTTCAGGGAGATAAGA-CT-TGCGTATTT
* * * * **
45526459 AATCCGCTCCACTGCAACTTCAGGGAGATAGGA-TTATCGGCTTT
1 AGTCTGCT-CACTGCAACTTCAGGGAGATAAGACTT-GCGTATTT
* *
45526503 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGC-CATCTT
1 AGTCTGCT-CACTGCAACTTCAGGGAGATAAGACTTGCGTAT-TT
* * *
45526547 CAGTCTGCCCCACTGCAACTTCA-GGAGGATAAGACTTGCTTACTT
1 -AGTCTG-CTCACTGCAACTTCAGGGA-GATAAGACTTGCGTATTT
* *
45526592 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-TT-TG-A-TG
1 AGTCTGCT-CACTGCAACTTCAGGGAGATAAGACTTGCGTATTT
* * * *
45526632 CGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAG-GT-TTT
1 AG-TCTGCTCACTGCAACTTCAGGGAGATAAGA-CT-TGCGTATTT
* * * **
45526676 AATCCGCTCCACTGCAACTTCAGGGAGATAAGA-TTATCGGCTTT
1 AGTCTGCT-CACTGCAACTTCAGGGAGATAAGACTT-GCGTATTT
* *
45526720 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGC-CATCTT
1 AGTCTGCT-CACTGCAACTTCAGGGAGATAAGACTTGCGTAT-TT
* * * * *
45526764 CAGTCTGCCCCACTGCAACTTCA-GAATGATAAGACTTACTTACTT
1 -AGTCTG-CTCACTGCAACTTCAGGGA-GATAAGACTTGCGTATTT
* *
45526809 AGTCTGCTCTACTACAACTTTAGGGAGATAAGACT
1 AGTCTGCTC-ACTGCAACTTCAGGGAGATAAGACT
45526844 AGATGCGATC
Statistics
Matches: 374, Mismatches: 52, Indels: 86
0.73 0.10 0.17
Matches are distributed among these distances:
38 3 0.01
39 2 0.01
40 44 0.12
41 12 0.03
42 6 0.02
43 18 0.05
44 203 0.54
45 76 0.20
46 7 0.02
47 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.28
Consensus pattern (43 bp):
AGTCTGCTCACTGCAACTTCAGGGAGATAAGACTTGCGTATTT
Found at i:45526649 original size:173 final size:173
Alignment explanation
Indices: 45526470--45526787 Score: 446
Period size: 173 Copynumber: 1.8 Consensus size: 173
45526460 ATCCGCTCCA
* * * *
45526470 CTGCAACTTCAGGGAGATAGGAT-TATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
1 CTGCAACTTCAGAGAGATAAGATCTA-AGGCTTTAATCCGCTCCACTGCAACTTCAGGGAGATAA
* * * *
45526534 GACTTGCCATCTTCAGTCTGCCCCACTGCAACTTCA-GGAGGATAAGACTTG-CTTACTT-AGTC
65 GA-TTACCAGCTTCAATCTGCCCCACTGCAACTTCAGGGA-GATAAGACTTGCCAT-CTTCAGTC
*
45526596 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGATGCGATCTGCTCT
127 TGCCCCACTGCAACTTCAGGGAGATAAGATTTGATGCGATCTGCTCT
*
45526643 CTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAG
1 CTGCAACTTCAGAGAGATAAGATCTAAGGCTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAG
* * * *
45526708 ATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTGCC
66 ATTACCAGCTTCAATCTGCCCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTGCC
45526773 CCACTGCAACTTCAG
131 CCACTGCAACTTCAG
45526788 AATGATAAGA
Statistics
Matches: 127, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
172 40 0.31
173 85 0.67
174 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (173 bp):
CTGCAACTTCAGAGAGATAAGATCTAAGGCTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAG
ATTACCAGCTTCAATCTGCCCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTGCC
CCACTGCAACTTCAGGGAGATAAGATTTGATGCGATCTGCTCT
Found at i:45526703 original size:217 final size:217
Alignment explanation
Indices: 45526328--45526926 Score: 1063
Period size: 217 Copynumber: 2.8 Consensus size: 217
45526318 TAGTGTCATT
* * *
45526328 TTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTATTTAGTCTGCTTCACTGCAAC
1 TTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAAC
*
45526393 TTCAGGGAGATAAGACTAGATGCGATCTGCTCTCCGCAACTTCAGAGAGATAAGATCTAAGGTTT
66 TTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTT
45526458 TAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTT
131 TAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTT
45526523 CAGGGAGATAAGACTTGCCATC
196 CAGGGAGATAAGACTTGCCATC
45526545 TTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAAC
1 TTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAAC
* *
45526610 TTCAGGGAGATAAGATTTGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTT
66 TTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTT
*
45526675 TAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTATCGGCTTTAATCTGCTCCACTGCAACTT
131 TAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTT
45526740 CAGGGAGATAAGACTTGCCATC
196 CAGGGAGATAAGACTTGCCATC
* * * * *
45526762 TTCAGTCTGCCCCACTGCAACTTCAGAATGATAAGACTTACTTACTTAGTCTGCTCTACTACAAC
1 TTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAAC
*
45526827 TTTAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTT
66 TTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTT
* *
45526892 TAATCCACTCCACTGCAACTTCAGGAAGATAGGAT
131 TAATCCGCTCCACTGCAACTTCAGGGAGATAGGAT
45526927 CTACAATCTT
Statistics
Matches: 364, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
217 364 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (217 bp):
TTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAAC
TTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTT
TAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTT
CAGGGAGATAAGACTTGCCATC
Found at i:45526726 original size:128 final size:130
Alignment explanation
Indices: 45526377--45526799 Score: 338
Period size: 128 Copynumber: 3.3 Consensus size: 130
45526367 GCTTATTTAG
* * * * * *
45526377 TCTGCTTCACTGCAACTTCAGGGAGATAAGACTAG-A--TGCGATCTGCTCTC-C-GCAACTTCA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGACTAGCATCTTCAATCCGC-CCCACTGCAACTTCA
* * * * * * *
45526437 GAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTT
65 GGGAGATAAGAT-TATGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATC-GATG
*
45526502 TAA
128 CAA
* * * *
45526505 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTGCCCCACTGCAACTTCA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGACTAG-CATCTTCAATCCGCCCCACTGCAACTTCA
* *
45526570 -GGAGGATAAGACT-T-GCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATT-T-GA
65 GGGA-GATAAGATTATGGC-T--TTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATCGA
*
45526630 TGCGA
126 TGCAA
* * * *
45526635 TCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTAAG-GT-TTTAATCCGCTCCACTGCAACTTC
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGA-CT-AGCATCTTCAATCCGCCCCACTGCAACTTC
45526697 AGGGAGATAAGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATC
64 AGGGAGATAAGATTAT-GGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TT---ATC
* *
45526762 --TTCAG
124 GATGCAA
*
45526767 TCTGCCCCACTGCAACTTCAGA-ATGATAAGACT
1 TCTGCTCCACTGCAACTTCAGAGA-GATAAGACT
45526800 TACTTACTTA
Statistics
Matches: 239, Mismatches: 32, Indels: 44
0.76 0.10 0.14
Matches are distributed among these distances:
128 96 0.40
129 29 0.12
130 14 0.06
131 6 0.03
132 22 0.09
133 72 0.30
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (130 bp):
TCTGCTCCACTGCAACTTCAGAGAGATAAGACTAGCATCTTCAATCCGCCCCACTGCAACTTCAG
GGAGATAAGATTATGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATCGATGCAA
Found at i:45526866 original size:173 final size:171
Alignment explanation
Indices: 45526503--45526922 Score: 424
Period size: 173 Copynumber: 2.4 Consensus size: 171
45526493 TATCGGCTTT
* ** * * *
45526503 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTGCCCCACTGCAACTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TT-ACGGCTTTAATCTGCTCCACTGCAACTT
* * *
45526568 CA-GGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGATG
64 CAGGGA-GATAAGACTTGCATACTTAGTCTGCCCCACTGCAACTTCAGGAAGATAAGATTTGATG
* * * **
45526632 CGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTT
128 AGATCTGCTCTCTACAACTTCAGAGAGATAAGATCTAAGGATGC
*
45526676 AATCCGCTCCACTGCAACTTCAGGGAGATAAGATTATCGGCTTTAATCTGCTCCACTGCAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTA-CGGCTTTAATCTGCTCCACTGCAACTTC
45526741 AGGGAGATAAGACTTGCCAT-CTTCAGTCTGCCCCACTGCAACTTCA-GAATGATAAGACTTACT
65 AGGGAGATAAGACTTG-CATACTT-AGTCTGCCCCACTGCAACTTCAGGAA-GATAAGA-TT--T
* * * *
45526804 TACTTAG-TCTGCTCTACTACAACTTTAGGGAGATAAGA-CT-A-GATGC
124 GA-TGAGATCTGCTCT-CTACAACTTCAGAGAGATAAGATCTAAGGATGC
* * * * * **
45526850 GATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TACGGCTTTAATCTGCTCCACTGCAACTTC
*
45526914 AGGAAGATA
65 AGGGAGATA
45526923 GGATCTACAA
Statistics
Matches: 208, Mismatches: 28, Indels: 22
0.81 0.11 0.09
Matches are distributed among these distances:
172 42 0.20
173 120 0.58
174 12 0.06
175 1 0.00
176 12 0.06
177 21 0.10
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (171 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTACGGCTTTAATCTGCTCCACTGCAACTTCA
GGGAGATAAGACTTGCATACTTAGTCTGCCCCACTGCAACTTCAGGAAGATAAGATTTGATGAGA
TCTGCTCTCTACAACTTCAGAGAGATAAGATCTAAGGATGC
Found at i:45527064 original size:132 final size:132
Alignment explanation
Indices: 45526918--45527962 Score: 1912
Period size: 132 Copynumber: 7.9 Consensus size: 132
45526908 AACTTCAGGA
* *
45526918 AGATAGGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGAGAGACAAGGCTTGGTGGCTTAA
1 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGCTTAA
45526983 ATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
66 ATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
45527048 GG
131 GG
*
45527050 AGATAAGATTTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGCTTAA
1 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGCTTAA
*
45527115 ATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCATCTTCGATCTGCTCCACTACTGCTTAG
66 ATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
45527180 GG
131 GG
45527182 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGCTTAA
1 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGCTTAA
*
45527247 ATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGTTTAG
66 ATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
45527312 GG
131 GG
* * *
45527314 AGATAAGATCTACAATCTTCAACCTTCTCCGTTGCTGTTGAGGGAGACAAGGCTTGGTGGGTTAA
1 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGCTTAA
*
45527379 ATCTGCTTCCCACTATCTTGGAAAGATAAGATCTGCCGTCTTCGATCTGCTCCACTACTGCTTAG
66 ATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
45527444 GG
131 GG
* *
45527446 AGATAAGGTCTACAATCTTCAACCTTCTTCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGCTTAA
1 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGCTTAA
*
45527511 ATCTGCTTCCCACTATCTTGGAAAGATAAGATCCACCGTCTTCGATCTGCTCCACTACTGCTTAG
66 ATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
45527576 GG
131 GG
45527578 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGCTTAA
1 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGCTTAA
45527643 ATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
66 ATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
45527708 GG
131 GG
45527710 AGATAAGATCTACAATCTTCAACCTTCAT-CGCTGCTGCTGAGGGAGACAAGGCTTGGTGGCTTA
1 AGATAAGATCTACAATCTTCAACCTTC-TCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGCTTA
*
45527774 AATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTACTTA
65 AATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGCTTA
45527839 GGG
130 GGG
* * *
45527842 AGATAAGATCTACAATCTTCAACCTTTTCCGCTGCTGCTGAGAGAGACTAGGCTTGGTGGCTTAA
1 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGCTTAA
* *
45527907 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTTGATCTGCTCCACT
66 ATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACT
45527963 GTCAATGCAG
Statistics
Matches: 883, Mismatches: 28, Indels: 4
0.97 0.03 0.00
Matches are distributed among these distances:
131 1 0.00
132 881 1.00
133 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.29
Consensus pattern (132 bp):
AGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGCTTAA
ATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
GG
Found at i:45529236 original size:7 final size:7
Alignment explanation
Indices: 45529226--45529283 Score: 50
Period size: 7 Copynumber: 8.3 Consensus size: 7
45529216 TTTCTTTCAC
45529226 TTTTATT
1 TTTTATT
45529233 TTTTATTT
1 TTTTA-TT
45529241 TTTTATT
1 TTTTATT
45529248 TTTT-TT
1 TTTTATT
*
45529254 ATTTTGTCT
1 -TTTTAT-T
*
45529263 TTGT-TT
1 TTTTATT
45529269 TTTTATT
1 TTTTATT
45529276 TTTT-TT
1 TTTTATT
45529282 TT
1 TT
45529284 GAATCTGAAC
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
6 10 0.23
7 22 0.50
8 11 0.25
9 1 0.02
ACGTcount: A:0.09, C:0.02, G:0.03, T:0.86
Consensus pattern (7 bp):
TTTTATT
Found at i:45529244 original size:8 final size:8
Alignment explanation
Indices: 45529226--45529280 Score: 58
Period size: 8 Copynumber: 6.5 Consensus size: 8
45529216 TTTCTTTCAC
45529226 TTTTA-TT
1 TTTTATTT
45529233 TTTTATTT
1 TTTTATTT
45529241 TTTTATTTT
1 TTTTA-TTT
45529250 TTTTATTTT
1 TTTTA-TTT
*
45529259 GTCTTTGTTT
1 -T-TTTATTT
45529269 TTTTATTT
1 TTTTATTT
45529277 TTTT
1 TTTT
45529281 TTTGAATCTG
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
7 5 0.12
8 17 0.40
9 13 0.31
10 4 0.10
11 3 0.07
ACGTcount: A:0.09, C:0.02, G:0.04, T:0.85
Consensus pattern (8 bp):
TTTTATTT
Found at i:45532715 original size:19 final size:19
Alignment explanation
Indices: 45532691--45532803 Score: 154
Period size: 19 Copynumber: 5.8 Consensus size: 19
45532681 AATCATAAAT
45532691 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
** *
45532710 TCTAAGATTATATATCATC
1 TCTAAGATTGCATATCATA
45532729 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
45532748 TCTAAGATTGTATATATCATA
1 TCTAAGATTG--CATATCATA
**
45532769 TCTTGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
45532788 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
45532804 CTCAAAAATT
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
19 64 0.80
21 16 0.20
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:45532778 original size:40 final size:40
Alignment explanation
Indices: 45532691--45532802 Score: 174
Period size: 40 Copynumber: 2.9 Consensus size: 40
45532681 AATCATAAAT
*
45532691 TCTAAGATTGCATATCATATCTAAGA-T-TATATATCATC
1 TCTAAGATTGCATATCATATCTAAGATTGTATATATCATA
45532729 TCTAAGATTGCATATCATATCTAAGATTGTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGTATATATCATA
** *
45532769 TCTTGGATTGCATATCATATCTAAGATTGCATAT
1 TCTAAGATTGCATATCATATCTAAGATTGTATAT
45532803 CCTCAAAAAT
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
38 26 0.38
39 1 0.01
40 41 0.60
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.40
Consensus pattern (40 bp):
TCTAAGATTGCATATCATATCTAAGATTGTATATATCATA
Done.