Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 160 of 221
Found at i:48281670 original size:12 final size:12
Alignment explanation
Indices: 48281638--48281673 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
48281628 TTTTGAACCT
* *
48281638 CTGCTTCTATTG
1 CTGCTTCTCTCG
48281650 CTGCTTCTCTCG
1 CTGCTTCTCTCG
48281662 CTGCTTCTCTCG
1 CTGCTTCTCTCG
48281674 TTGTAGCCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.03, C:0.36, G:0.17, T:0.44
Consensus pattern (12 bp):
CTGCTTCTCTCG
Found at i:48287182 original size:9 final size:9
Alignment explanation
Indices: 48287168--48287357 Score: 143
Period size: 9 Copynumber: 22.4 Consensus size: 9
48287158 AAGTTATTTA
48287168 TTATGTAAG
1 TTATGTAAG
48287177 TTATGTAAG
1 TTATGTAAG
*
48287186 TTGTGTAAG
1 TTATGTAAG
48287195 TTATGTAAG
1 TTATGTAAG
* *
48287204 CTGTGTAAG
1 TTATGTAAG
*
48287213 TTGTGT-A-
1 TTATGTAAG
* *
48287220 TTATGAAAC
1 TTATGTAAG
48287229 TTATGTAAG
1 TTATGTAAG
*
48287238 TTATGTCAG
1 TTATGTAAG
*
48287247 TTGTGT-A-
1 TTATGTAAG
* *
48287254 TTATGAAAC
1 TTATGTAAG
48287263 TTATGTAAG
1 TTATGTAAG
*
48287272 TTATGT--C
1 TTATGTAAG
48287279 TTATGTAAG
1 TTATGTAAG
* *
48287288 TGATGTAAA
1 TTATGTAAG
*
48287297 ATATGT-A-
1 TTATGTAAG
48287304 TTATGTAAG
1 TTATGTAAG
*
48287313 TTATGTTAG
1 TTATGTAAG
*
48287322 TTGTGT-A-
1 TTATGTAAG
*
48287329 TTATGTAAA
1 TTATGTAAG
48287338 TTATGT-A-
1 TTATGTAAG
48287345 TTATGTAAG
1 TTATGTAAG
48287354 TTAT
1 TTAT
48287358 AAAATTTGTG
Statistics
Matches: 144, Mismatches: 25, Indels: 24
0.75 0.13 0.12
Matches are distributed among these distances:
7 30 0.21
8 10 0.07
9 104 0.72
ACGTcount: A:0.31, C:0.03, G:0.21, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Found at i:48287257 original size:25 final size:25
Alignment explanation
Indices: 48287169--48287445 Score: 108
Period size: 25 Copynumber: 11.0 Consensus size: 25
48287159 AGTTATTTAT
*
48287169 TATGTAAGTTATGTAAGTTGTGTAAGT
1 TATGTAAGTTATGTAAGTTATGT-A-T
* * *
48287196 TATGTAAGCTGTGTAAGTTGTGTAT
1 TATGTAAGTTATGTAAGTTATGTAT
* *
48287221 TATGAAACTTATGTAAGTTATGTCAGT
1 TATGTAAGTTATGTAAGTTATGT-A-T
* * *
48287248 TGTGT-A-TTATGAAACTTATGTAAGT
1 TATGTAAGTTATGTAAGTTATGT-A-T
* * *
48287273 TATGT--CTTATGTAAGTGATGTAAAA
1 TATGTAAGTTATGTAAGTTATGT--AT
48287298 TATGT-A-TTATGTAAGTTATGTTAGT
1 TATGTAAGTTATGTAAGTTATG-TA-T
* *
48287323 TGTGT-A-TTATGTAAATTATGTAT
1 TATGTAAGTTATGTAAGTTATGTAT
** * *
48287346 TATGTAAGTTATAAAATTTGTGTAT
1 TATGTAAGTTATGTAAGTTATGTAT
* * * * *
48287371 TACGTAACTTATTTAATTTATGTAAG
1 TATGTAAGTTATGTAAGTTATGT-AT
* * *
48287397 TATGT-A-TTAT-TATGTAATTTAT
1 TATGTAAGTTATGTAAGTTATGTAT
*
48287419 TATGTAAGATATTATCTAAGTTATGTA
1 TATGTAAG---TTATGTAAGTTATGTA
48287446 AGTTTTTTTT
Statistics
Matches: 193, Mismatches: 41, Indels: 31
0.73 0.15 0.12
Matches are distributed among these distances:
22 6 0.03
23 12 0.06
24 8 0.04
25 119 0.62
26 11 0.06
27 29 0.15
28 8 0.04
ACGTcount: A:0.32, C:0.03, G:0.18, T:0.47
Consensus pattern (25 bp):
TATGTAAGTTATGTAAGTTATGTAT
Found at i:48287278 original size:34 final size:34
Alignment explanation
Indices: 48287195--48287278 Score: 141
Period size: 34 Copynumber: 2.5 Consensus size: 34
48287185 GTTGTGTAAG
* * *
48287195 TTATGTAAGCTGTGTAAGTTGTGTATTATGAAAC
1 TTATGTAAGTTATGTCAGTTGTGTATTATGAAAC
48287229 TTATGTAAGTTATGTCAGTTGTGTATTATGAAAC
1 TTATGTAAGTTATGTCAGTTGTGTATTATGAAAC
48287263 TTATGTAAGTTATGTC
1 TTATGTAAGTTATGTC
48287279 TTATGTAAGT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 47 1.00
ACGTcount: A:0.29, C:0.06, G:0.21, T:0.44
Consensus pattern (34 bp):
TTATGTAAGTTATGTCAGTTGTGTATTATGAAAC
Found at i:48287281 original size:16 final size:16
Alignment explanation
Indices: 48287157--48287357 Score: 105
Period size: 16 Copynumber: 12.5 Consensus size: 16
48287147 GATTTAGGAA
*
48287157 TAAGTTATTTATTATG
1 TAAGTTATGTATTATG
*
48287173 TAAGTTATGTAAGTTGTG
1 TAAGTTATGT-A-TTATG
* *
48287191 TAAGTTATGTAAGCTGTG
1 TAAGTTATGT-A-TTATG
*
48287209 TAAGTTGTGTATTATG
1 TAAGTTATGTATTATG
* *
48287225 AAACTTATGTAAGTTATG
1 TAAGTTATGT-A-TTATG
* *
48287243 TCAGTTGTGTATTATG
1 TAAGTTATGTATTATG
*
48287259 -AA---A---CTTATG
1 TAAGTTATGTATTATG
*
48287268 TAAGTTATGTCTTATG
1 TAAGTTATGTATTATG
* *
48287284 TAAGTGATGTAAAATATG
1 TAAGTTATGT--ATTATG
48287302 T-A-TTATGTAAGTTATG
1 TAAGTTATGT-A-TTATG
* *
48287318 TTAGTTGTGTATTATG
1 TAAGTTATGTATTATG
*
48287334 TAAATTATGTATTATG
1 TAAGTTATGTATTATG
48287350 TAAGTTAT
1 TAAGTTAT
48287358 AAAATTTGTG
Statistics
Matches: 143, Mismatches: 26, Indels: 32
0.71 0.13 0.16
Matches are distributed among these distances:
9 5 0.03
10 2 0.01
13 1 0.01
15 3 0.02
16 74 0.52
17 7 0.05
18 51 0.36
ACGTcount: A:0.31, C:0.02, G:0.20, T:0.46
Consensus pattern (16 bp):
TAAGTTATGTATTATG
Found at i:48287308 original size:41 final size:41
Alignment explanation
Indices: 48287263--48287357 Score: 122
Period size: 41 Copynumber: 2.3 Consensus size: 41
48287253 ATTATGAAAC
48287263 TTATGTAAGTTATG-T-CTTATGTAAGTGATGTAAAATATGTA
1 TTATGTAAGTTATGTTACTTATGT-A-TGATGTAAAATATGTA
* * * *
48287304 TTATGTAAGTTATGTTAGTTGTGTATTATGTAAATTATGTA
1 TTATGTAAGTTATGTTACTTATGTATGATGTAAAATATGTA
48287345 TTATGTAAGTTAT
1 TTATGTAAGTTAT
48287358 AAAATTTGTG
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
41 41 0.85
42 2 0.04
43 5 0.10
ACGTcount: A:0.32, C:0.01, G:0.19, T:0.48
Consensus pattern (41 bp):
TTATGTAAGTTATGTTACTTATGTATGATGTAAAATATGTA
Found at i:48287367 original size:41 final size:41
Alignment explanation
Indices: 48287290--48287397 Score: 126
Period size: 41 Copynumber: 2.6 Consensus size: 41
48287280 TATGTAAGTG
* ***
48287290 ATGTAAAATATGTATTATGTAAGTTATGTTAGTTGTGTATT
1 ATGTAAATTATGTATTATGTAAGTTATAAAAGTTGTGTATT
*
48287331 ATGTAAATTATGTATTATGTAAGTTATAAAATTTGTGTATT
1 ATGTAAATTATGTATTATGTAAGTTATAAAAGTTGTGTATT
* * *
48287372 ACGTAACTTATTTAATTTATGTAAGT
1 ATGTAAATTATGT-A-TTATGTAAGT
48287398 ATGTATTATT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
41 46 0.81
42 1 0.02
43 10 0.18
ACGTcount: A:0.34, C:0.02, G:0.16, T:0.48
Consensus pattern (41 bp):
ATGTAAATTATGTATTATGTAAGTTATAAAAGTTGTGTATT
Found at i:48287414 original size:27 final size:25
Alignment explanation
Indices: 48287379--48287448 Score: 70
Period size: 24 Copynumber: 2.8 Consensus size: 25
48287369 ATTACGTAAC
* *
48287379 TTATTTAATTTATGTAAGTATGTATTA
1 TTATCTAATTTATGTAAGTAAG-A-TA
* *
48287406 TTATGTAATTTAT-TATGTAAGATA
1 TTATCTAATTTATGTAAGTAAGATA
*
48287430 TTATCTAAGTTATGTAAGT
1 TTATCTAATTTATGTAAGT
48287449 TTTTTTTTTG
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
24 13 0.36
25 5 0.14
26 6 0.17
27 12 0.33
ACGTcount: A:0.34, C:0.01, G:0.13, T:0.51
Consensus pattern (25 bp):
TTATCTAATTTATGTAAGTAAGATA
Found at i:48287706 original size:24 final size:23
Alignment explanation
Indices: 48287676--48287728 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 23
48287666 TCCAACACCA
*
48287676 TTAAAAACCAAATTGTTACAATATT
1 TTAAAAA-CAAATT-TTAAAATATT
* *
48287701 TTAAAAAGAAATTTTAAAATTTT
1 TTAAAAACAAATTTTAAAATATT
48287724 TTAAA
1 TTAAA
48287729 TCAAAATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 13 0.52
24 5 0.20
25 7 0.28
ACGTcount: A:0.51, C:0.06, G:0.04, T:0.40
Consensus pattern (23 bp):
TTAAAAACAAATTTTAAAATATT
Found at i:48288368 original size:7 final size:7
Alignment explanation
Indices: 48288358--48288384 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
48288348 ATTTAAAGCA
48288358 ATTGCCG
1 ATTGCCG
48288365 ATTGCCG
1 ATTGCCG
48288372 ATTGCCG
1 ATTGCCG
48288379 ATTGCC
1 ATTGCC
48288385 AAGTTTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.30, G:0.26, T:0.30
Consensus pattern (7 bp):
ATTGCCG
Found at i:48288853 original size:41 final size:41
Alignment explanation
Indices: 48288807--48288930 Score: 164
Period size: 41 Copynumber: 3.1 Consensus size: 41
48288797 GGGGGGATTT
48288807 GGGAATTTAGGGATTTAGGGAAATTAAATCGGGGAAATTGG
1 GGGAATTTAGGGATTTAGGGAAATTAAATCGGGGAAATTGG
* *
48288848 GGGAATTTGGGGATTTAGGGAAATTAAATCGGGGAAACTGG
1 GGGAATTTAGGGATTTAGGGAAATTAAATCGGGGAAATTGG
* ** *
48288889 GGGAA--TAGGAATTGGGGGGAAATGAAATCGGGG-AATTGG
1 GGGAATTTAGGGATT-TAGGGAAATTAAATCGGGGAAATTGG
48288928 GGG
1 GGG
48288931 GAATACGAAA
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
39 14 0.19
40 16 0.22
41 44 0.59
ACGTcount: A:0.32, C:0.03, G:0.42, T:0.23
Consensus pattern (41 bp):
GGGAATTTAGGGATTTAGGGAAATTAAATCGGGGAAATTGG
Found at i:48288931 original size:40 final size:40
Alignment explanation
Indices: 48288865--48288944 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
48288855 TGGGGATTTA
* * *
48288865 GGGAAATTAAATCGGGGAAACTGGGGGAATAGGAATTGGG
1 GGGAAATGAAATCGGGGAAACTGGGGGAATACGAAATGGG
*
48288905 GGGAAATGAAATCGGGG-AATTGGGGGGAATACGAAATGGG
1 GGGAAATGAAATCGGGGAAACT-GGGGGAATACGAAATGGG
48288945 AAATTAGGGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.09
40 32 0.91
ACGTcount: A:0.35, C:0.05, G:0.44, T:0.16
Consensus pattern (40 bp):
GGGAAATGAAATCGGGGAAACTGGGGGAATACGAAATGGG
Found at i:48288949 original size:24 final size:24
Alignment explanation
Indices: 48288898--48288949 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
48288888 GGGGAATAGG
* *
48288898 AATTGGGGGGAAATGAAATCGGGG
1 AATTGGGGGGAAACGAAATCGGGA
48288922 AATTGGGGGGAATACGAAAT-GGGA
1 AATTGGGGGGAA-ACGAAATCGGGA
48288946 AATT
1 AATT
48288950 AGGGAATGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 19 0.76
25 6 0.24
ACGTcount: A:0.37, C:0.04, G:0.40, T:0.19
Consensus pattern (24 bp):
AATTGGGGGGAAACGAAATCGGGA
Found at i:48289518 original size:22 final size:22
Alignment explanation
Indices: 48289482--48289534 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
48289472 ATAGGCCCCT
*
48289482 AACTTT-AACCTGTAACCTTTA
1 AACTTTAAACCCGTAACCTTTA
48289503 AACTTTAAACCCGTAACCTTTA
1 AACTTTAAACCCGTAACCTTTA
*
48289525 AAATTTAAAC
1 AACTTTAAAC
48289535 TCTTAAACCC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 6 0.21
22 23 0.79
ACGTcount: A:0.40, C:0.23, G:0.04, T:0.34
Consensus pattern (22 bp):
AACTTTAAACCCGTAACCTTTA
Found at i:48289520 original size:29 final size:29
Alignment explanation
Indices: 48289487--48289579 Score: 82
Period size: 29 Copynumber: 3.2 Consensus size: 29
48289477 CCCCTAACTT
*
48289487 TAACCTGTAACCTTTAAACTTTAAACCCG
1 TAACCTCTAACCTTTAAACTTTAAACCCG
* **
48289516 TAACCTTTAAAATTTAAACTCTTAAACCC-
1 TAACCTCTAACCTTTAAACT-TTAAACCCG
* * * *
48289545 TAAACTACAAACC-TTACACTCTAAACCCG
1 TAACCT-CTAACCTTTAAACTTTAAACCCG
48289574 TAACCT
1 TAACCT
48289580 TACACTCAAA
Statistics
Matches: 50, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
28 7 0.14
29 33 0.66
30 10 0.20
ACGTcount: A:0.39, C:0.29, G:0.03, T:0.29
Consensus pattern (29 bp):
TAACCTCTAACCTTTAAACTTTAAACCCG
Found at i:48290226 original size:114 final size:115
Alignment explanation
Indices: 48290108--48290695 Score: 368
Period size: 114 Copynumber: 5.1 Consensus size: 115
48290098 ACAAAACGCT
* * *
48290108 GCGTTTTA-TTAAAATACGTGGTGGCGCTTTATCCAAAGTGCCGTTGAAGCTATTTTTAACGGCG
1 GCGTTTTAGTTAAGATACGTTGCGGCGCTTTATCCAAAGTGCCGTTGAAGCTATTTTTAACGGCG
48290172 TTTTCCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTAC
66 TTTTCCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTAC
* ** ** * *
48290222 GCGTTTTAGTTAAGAT--GTATACATCG--AGA-CCAAAACAGTG-CGTTTTGGTTCAGATA-TT
1 GCGTTTTAGTTAAGATACGT-TGCGGCGCTTTATCC--AA-AGTGCCG--TT-G--AAGCTATTT
* * * * * * * * *
48290280 TT-GCGGCGTTTTCAT-GTATGCGCCACTAAATGTAA-CATAGC-TTAAGA-CAAAAC-GC
57 TTAACGGCGTTTTCCTAGTAAGCGCCACT-AATATAAGTATA-CATCAAAATTAAAACTAC
* * *
48290335 TGCGTTTT-GTTAAGATACGTTGCGGCGCTTTATCCAAAGCGCCGCTGAAGCTATTCTTTAATGG
1 -GCGTTTTAGTTAAGATACGTTGCGGCGCTTTATCCAAAGTGCCGTTGAAGCTATT-TTTAACGG
48290399 CGTTTTCCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTAC
64 CGTTTTCCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTAC
* ** ** * *
48290451 GCGTTTTAGTTAAGAT--GTATACATCG--AGA-CCAAAACGGTG-CGTTTTGGTTCAGATA-TT
1 GCGTTTTAGTTAAGATACGT-TGCGGCGCTTTATCC-AAA--GTGCCG--TT-G--AAGCTATTT
* * * * * * * * * **
48290509 TT-GCAGCGTTTTCAT-GTATGCGCCACTAAATGTAA-CATAGC-TTAAGA-CAAAACGCC
57 TTAACGGCGTTTTCCTAGTAAGCGCCACT-AATATAAGTATA-CATCAAAATTAAAACTAC
* * *
48290565 GCGTTTT-GTTAAGATACGTTGCGGCGCTTTATCCAAAGCGCCGCTGAAGCTATTCTTTAACGGT
1 GCGTTTTAGTTAAGATACGTTGCGGCGCTTTATCCAAAGTGCCGTTGAAGCTATT-TTTAACGGC
48290629 GTTTTCCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTAC
65 GTTTTCCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTAC
48290680 GCGTTTTAGTTAAGAT
1 GCGTTTTAGTTAAGAT
48290696 GTATACATCG
Statistics
Matches: 341, Mismatches: 80, Indels: 104
0.65 0.15 0.20
Matches are distributed among these distances:
110 8 0.02
111 4 0.01
112 11 0.03
113 62 0.18
114 92 0.27
115 85 0.25
116 58 0.17
117 12 0.04
118 5 0.01
119 4 0.01
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (115 bp):
GCGTTTTAGTTAAGATACGTTGCGGCGCTTTATCCAAAGTGCCGTTGAAGCTATTTTTAACGGCG
TTTTCCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTAC
Found at i:48290520 original size:229 final size:229
Alignment explanation
Indices: 48290007--48290916 Score: 1484
Period size: 229 Copynumber: 4.0 Consensus size: 229
48289997 TGTACTAATT
*
48290007 GATGTATACATCGAGACCAAAACAGTGCGTTTTGGTTCAGATATTTTGCGGCGTTTTCCTATAAG
1 GATGTATACATCGAGACCAAAACAGTGCGTTTTGGTTCAGATATTTTGCGGCGTTTTCATATAAG
* * * * *
48290072 CGCCACTAAATGTAACGTAGCTTAAGACAAAACGCTGCGTTTTATTAAAATACGTGGTGGCGCTT
66 CGCCACTAAATGTAACATAGCTTAAGACAAAACGCTGCGTTTTGTTAAGATACGTTGCGGCGCTT
* *
48290137 TATCCAAAGTGCCGTTGAAGCTATT-TTTAACGGCGTTTTCCTAGTAAGCGCCACTAATATAAGT
131 TATCCAAAGCGCCGCTGAAGCTATTCTTTAACGGCGTTTTCCTAGTAAGCGCCACTAATATAAGT
48290201 ATACATCAAAATTAAAACTACGCGTTTTAGTTAA
196 ATACATCAAAATTAAAACTACGCGTTTTAGTTAA
* *
48290235 GATGTATACATCGAGACCAAAACAGTGCGTTTTGGTTCAGATATTTTGCGGCGTTTTCATGTATG
1 GATGTATACATCGAGACCAAAACAGTGCGTTTTGGTTCAGATATTTTGCGGCGTTTTCATATAAG
48290300 CGCCACTAAATGTAACATAGCTTAAGACAAAACGCTGCGTTTTGTTAAGATACGTTGCGGCGCTT
66 CGCCACTAAATGTAACATAGCTTAAGACAAAACGCTGCGTTTTGTTAAGATACGTTGCGGCGCTT
*
48290365 TATCCAAAGCGCCGCTGAAGCTATTCTTTAATGGCGTTTTCCTAGTAAGCGCCACTAATATAAGT
131 TATCCAAAGCGCCGCTGAAGCTATTCTTTAACGGCGTTTTCCTAGTAAGCGCCACTAATATAAGT
48290430 ATACATCAAAATTAAAACTACGCGTTTTAGTTAA
196 ATACATCAAAATTAAAACTACGCGTTTTAGTTAA
* * * *
48290464 GATGTATACATCGAGACCAAAACGGTGCGTTTTGGTTCAGATATTTTGCAGCGTTTTCATGTATG
1 GATGTATACATCGAGACCAAAACAGTGCGTTTTGGTTCAGATATTTTGCGGCGTTTTCATATAAG
*
48290529 CGCCACTAAATGTAACATAGCTTAAGACAAAACGCCGCGTTTTGTTAAGATACGTTGCGGCGCTT
66 CGCCACTAAATGTAACATAGCTTAAGACAAAACGCTGCGTTTTGTTAAGATACGTTGCGGCGCTT
*
48290594 TATCCAAAGCGCCGCTGAAGCTATTCTTTAACGGTGTTTTCCTAGTAAGCGCCACTAATATAAGT
131 TATCCAAAGCGCCGCTGAAGCTATTCTTTAACGGCGTTTTCCTAGTAAGCGCCACTAATATAAGT
48290659 ATACATCAAAATTAAAACTACGCGTTTTAGTTAA
196 ATACATCAAAATTAAAACTACGCGTTTTAGTTAA
* * * *
48290693 GATGTATACATCGAGACTAAAACGGTGCGTTTTAGTTCAGATATTTTGCGGCGTTTTCCTATAAG
1 GATGTATACATCGAGACCAAAACAGTGCGTTTTGGTTCAGATATTTTGCGGCGTTTTCATATAAG
* * *
48290758 CGCCACTAAATGTAACATAGCTTAATACAAAACACTGCGTTTTGTTAAGATACTTTGCGGCGCTT
66 CGCCACTAAATGTAACATAGCTTAAGACAAAACGCTGCGTTTTGTTAAGATACGTTGCGGCGCTT
48290823 TGGAT-C-AAGCGCCGCT-AATGCTATTCTTTAACGGCGTTTT-CTAGTAAGCGCCAC---T-T-
131 T--ATCCAAAGCGCCGCTGAA-GCTATTCTTTAACGGCGTTTTCCTAGTAAGCGCCACTAATATA
*
48290879 A-TCTA-ATCAAAATTAAAACTACGCGTTTTAGTTAA
193 AGTATACATCAAAATTAAAACTACGCGTTTTAGTTAA
48290914 GAT
1 GAT
48290917 ATTTTTGCGG
Statistics
Matches: 650, Mismatches: 28, Indels: 15
0.94 0.04 0.02
Matches are distributed among these distances:
221 33 0.05
222 3 0.00
223 1 0.00
224 1 0.00
225 1 0.00
228 161 0.25
229 447 0.69
230 1 0.00
231 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (229 bp):
GATGTATACATCGAGACCAAAACAGTGCGTTTTGGTTCAGATATTTTGCGGCGTTTTCATATAAG
CGCCACTAAATGTAACATAGCTTAAGACAAAACGCTGCGTTTTGTTAAGATACGTTGCGGCGCTT
TATCCAAAGCGCCGCTGAAGCTATTCTTTAACGGCGTTTTCCTAGTAAGCGCCACTAATATAAGT
ATACATCAAAATTAAAACTACGCGTTTTAGTTAA
Found at i:48290532 original size:115 final size:115
Alignment explanation
Indices: 48290167--48290766 Score: 421
Period size: 115 Copynumber: 5.2 Consensus size: 115
48290157 CTATTTTTAA
48290167 CGGCGTTTTCCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGCGTTTTAGT
1 CGGCGTTTTCCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGCGTTTTAGT
*
48290232 TAAGATGTATACATCGAGACCAAAACAGTGCGTTTTGGTTCAGATATTTTG
66 TAAGATGTATACATCGAGACCAAAAC-GTGCGTTTTAGTTCAGATATTTTG
* * * * * * * *
48290283 CGGCGTTTTCAT-GTATGCGCCACTAAATGTAA-CATAGC-TTAAGA-CAAAAC-GCTGCGTTTT
1 CGGCGTTTTCCTAGTAAGCGCCACT-AATATAAGTATA-CATCAAAATTAAAACTAC-GCGTTTT
* ** ** * * * ** * * * **
48290343 -GTTAAGATACGT-TGCGGCGCTTTATCCAAAGCG-CCGCTGAAGCT-A-TTCTTTAA
63 AGTTAAGAT--GTATACATCG--AGA-CCAAAACGTGCGTTTTAGTTCAGATATTTTG
*
48290396 TGGCGTTTTCCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGCGTTTTAGT
1 CGGCGTTTTCCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGCGTTTTAGT
*
48290461 TAAGATGTATACATCGAGACCAAAACGGTGCGTTTTGGTTCAGATATTTTG
66 TAAGATGTATACATCGAGACCAAAAC-GTGCGTTTTAGTTCAGATATTTTG
* * * * * * * * **
48290512 CAGCGTTTTCAT-GTATGCGCCACTAAATGTAA-CATAGC-TTAAGA-CAAAACGCCGCGTTTT-
1 CGGCGTTTTCCTAGTAAGCGCCACT-AATATAAGTATA-CATCAAAATTAAAACTACGCGTTTTA
* ** ** * * * ** * * * **
48290572 GTTAAGATACGT-TGCGGCGCTTTATCCAAAGCG-CCGCTGAAGCT-A-TTCTTTAA
64 GTTAAGAT--GTATACATCG--AGA-CCAAAACGTGCGTTTTAGTTCAGATATTTTG
*
48290625 CGGTGTTTTCCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGCGTTTTAGT
1 CGGCGTTTTCCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGCGTTTTAGT
*
48290690 TAAGATGTATACATCGAGACTAAAACGGTGCGTTTTAGTTCAGATATTTTG
66 TAAGATGTATACATCGAGACCAAAAC-GTGCGTTTTAGTTCAGATATTTTG
48290741 CGGCGTTTTCCTA-TAAGCGCCACTAA
1 CGGCGTTTTCCTAGTAAGCGCCACTAA
48290767 ATGTAACATA
Statistics
Matches: 344, Mismatches: 104, Indels: 73
0.66 0.20 0.14
Matches are distributed among these distances:
112 11 0.03
113 62 0.18
114 86 0.25
115 98 0.28
116 75 0.22
117 12 0.03
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.31
Consensus pattern (115 bp):
CGGCGTTTTCCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGCGTTTTAGT
TAAGATGTATACATCGAGACCAAAACGTGCGTTTTAGTTCAGATATTTTG
Found at i:48290714 original size:39 final size:39
Alignment explanation
Indices: 48290657--48290734 Score: 93
Period size: 39 Copynumber: 2.0 Consensus size: 39
48290647 ACTAATATAA
* *
48290657 GTATACATCAAAATTAAAACTACGCGTTTTAGTTAAGAT
1 GTATACATCAAAACTAAAACGACGCGTTTTAGTTAAGAT
* * ** *
48290696 GTATACATCGAGACTAAAACGGTGCGTTTTAGTTCAGAT
1 GTATACATCAAAACTAAAACGACGCGTTTTAGTTAAGAT
48290735 ATTTTGCGGC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (39 bp):
GTATACATCAAAACTAAAACGACGCGTTTTAGTTAAGAT
Found at i:48292474 original size:37 final size:37
Alignment explanation
Indices: 48292418--48292528 Score: 115
Period size: 37 Copynumber: 3.0 Consensus size: 37
48292408 TCCAAAAAAA
*
48292418 TAATATTATTTTAATAGTTTAATATTAAATTTAAT-T
1 TAATATTATCTTAATAGTTTAATATTAAATTTAATAT
**
48292454 TAATACTTATCTTAATAGTTTTTTATT-AATTTAATAT
1 TAATA-TTATCTTAATAGTTTAATATTAAATTTAATAT
*
48292491 TAAAATGATTATCGTAATA--TTAA-ATTAAATTTAATAT
1 T--AAT-ATTATCTTAATAGTTTAATATTAAATTTAATAT
48292528 T
1 T
48292529 TATCTTGTAG
Statistics
Matches: 63, Mismatches: 6, Indels: 11
0.79 0.08 0.14
Matches are distributed among these distances:
36 16 0.25
37 33 0.52
39 13 0.21
40 1 0.02
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.52
Consensus pattern (37 bp):
TAATATTATCTTAATAGTTTAATATTAAATTTAATAT
Found at i:48297727 original size:183 final size:183
Alignment explanation
Indices: 48297395--48297767 Score: 423
Period size: 183 Copynumber: 2.0 Consensus size: 183
48297385 ACAAAATTTG
* * *
48297395 CATTTTTCCCACTGTATCCAACCCTCAAAGCTGGACACTCTAGTGAAGACATACTATTTTTGTCT
1 CATTATTCCCACTGTATCCAACCCTCAAAGCTGGACACTCCAGTGAAGACACACTATTTTTGTCT
* * *** *
48297460 TTAATAATAGACTCATGCCCAGTATCCATCAAAATATCAGCCCTAATTAAAAACATTGTCCCGAC
66 TTAATAATAGACCCATGCCCAATATCCATCAAAATATCAGCCCTAATTAAAAACATCAACCCAAC
* *
48297525 CAAATATTCATTCCCCAAAACACT-AAATGCGTTAGTATCATATGTCGCAACAT
131 CAAATATTCATTCCCCAAAACACTAAAAT-CGTTAGTATCATATGCCGCAACAC
* *
48297578 CATTATTCCCACTGTCTCCAACCC-CAGAAGCTGGACACTCCA-TCGAAGACCCACTATTTTTGT
1 CATTATTCCCACTGTATCCAACCCTCA-AAGCTGGACACTCCAGT-GAAGACACACTATTTTTGT
* **** * * *
48297641 CTTTATTAATAGACCCATGCCCAATATCCATCAAAATATTTTTCCTATTTGAAGACATCAACCCA
64 CTTTAATAATAGACCCATGCCCAATATCCATCAAAATATCAGCCCTAATTAAAAACATCAACCCA
* ** * * *
48297706 ACCGAAAT-TTTAGTT-CCCAAAATGCTAAAATTGTTAGTATCATGTGCCGCAACCC
129 ACC-AAATATTCA-TTCCCCAAAACACTAAAATCGTTAGTATCATATGCCGCAACAC
48297761 CATTATT
1 CATTATT
48297768 GTTTGCCCTA
Statistics
Matches: 158, Mismatches: 27, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
182 3 0.02
183 145 0.92
184 10 0.06
ACGTcount: A:0.32, C:0.27, G:0.10, T:0.30
Consensus pattern (183 bp):
CATTATTCCCACTGTATCCAACCCTCAAAGCTGGACACTCCAGTGAAGACACACTATTTTTGTCT
TTAATAATAGACCCATGCCCAATATCCATCAAAATATCAGCCCTAATTAAAAACATCAACCCAAC
CAAATATTCATTCCCCAAAACACTAAAATCGTTAGTATCATATGCCGCAACAC
Found at i:48299521 original size:27 final size:26
Alignment explanation
Indices: 48299489--48299555 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 26
48299479 GGGTCTACTA
*
48299489 TATTTTTTATTTGAAAATCTCTTTTTC
1 TATTTTTTATTT-AAAATCCCTTTTTC
* * *
48299516 TGTTTTTCTCTTTATAATCCCTTTTTC
1 TATTTTT-TATTTAAAATCCCTTTTTC
*
48299543 TAATTTTTATTTA
1 TATTTTTTATTTA
48299556 TGATTTTTTT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
26 5 0.16
27 23 0.72
28 4 0.12
ACGTcount: A:0.19, C:0.13, G:0.03, T:0.64
Consensus pattern (26 bp):
TATTTTTTATTTAAAATCCCTTTTTC
Found at i:48311072 original size:43 final size:41
Alignment explanation
Indices: 48311006--48311205 Score: 186
Period size: 43 Copynumber: 4.7 Consensus size: 41
48310996 TAAATTTAGT
* * *
48311006 GATACGGGGAATCAACACATAGCATCCCCTTTCACAGTCAAA
1 GATACGGGGAATCAGCACTTAGCAACCCCTTT-ACAGTCAAA
* * * * **
48311048 GGTACGGTGGAATTAGCACTTAGCAACCACCTTTATATTCAGT
1 GATACGG-GGAATCAGCACTTAGCAACC-CCTTTACAGTCAAA
* *
48311091 GATACGGGGAATCAGCACATAGCAACCCCTTTCACAATCAAA
1 GATACGGGGAATCAGCACTTAGCAACCCCTTT-ACAGTCAAA
* *
48311133 GAAACGGTGGAATCAGCACTTAGCAACCACCTTTAAAGTCAATA
1 GATACGG-GGAATCAGCACTTAGCAACC-CCTTTACAGTCAA-A
* * *
48311177 -ATTCGGGGAATTAACACTTAGCAACCCCT
1 GATACGGGGAATCAGCACTTAGCAACCCCT
48311206 CGGGGAATCT
Statistics
Matches: 128, Mismatches: 24, Indels: 13
0.78 0.15 0.08
Matches are distributed among these distances:
41 8 0.06
42 53 0.41
43 56 0.44
44 11 0.09
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (41 bp):
GATACGGGGAATCAGCACTTAGCAACCCCTTTACAGTCAAA
Found at i:48311108 original size:42 final size:42
Alignment explanation
Indices: 48310980--48311202 Score: 184
Period size: 42 Copynumber: 5.3 Consensus size: 42
48310970 GTGAATTCAA
* * * * *
48310980 CACTTAGAAACCA-CTTTAAATTTAGTGATACGGGGAATCAA
1 CACTTAGCAACCACCTTTAAAGTCAATGATACGGGGAATCAG
* * * * * *
48311021 CACATAGCATCC-CCTTTCACAGTCAAAGGTACGGTGGAATTAG
1 CACTTAGCAACCACCTTT-AAAGTCAATGATACGG-GGAATCAG
* * *
48311064 CACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAG
1 CACTTAGCAACCACCTTTAAAGTCAATGATACGGGGAATCAG
* * *
48311106 CACATAGCAACC-CCTTTCACAA-TCAAAGAAACGGTGGAATCAG
1 CACTTAGCAACCACCTTT-A-AAGTCAATGATACGG-GGAATCAG
* * * *
48311149 CACTTAGCAACCACCTTTAAAGTCAATAATTCGGGGAATTAA
1 CACTTAGCAACCACCTTTAAAGTCAATGATACGGGGAATCAG
48311191 CACTTAGCAACC
1 CACTTAGCAACC
48311203 CCTCGGGGAA
Statistics
Matches: 142, Mismatches: 31, Indels: 17
0.75 0.16 0.09
Matches are distributed among these distances:
41 18 0.13
42 58 0.41
43 56 0.39
44 10 0.07
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.23
Consensus pattern (42 bp):
CACTTAGCAACCACCTTTAAAGTCAATGATACGGGGAATCAG
Found at i:48311110 original size:85 final size:85
Alignment explanation
Indices: 48310980--48311205 Score: 310
Period size: 85 Copynumber: 2.7 Consensus size: 85
48310970 GTGAATTCAA
* * * *
48310980 CACTTAGAAACCA-CTTTAAATTTAGTGATACGGGGAATCAACACATAGCATCCCCTTTCACAGT
1 CACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATCAACACATAGCAACCCCTTTCACAAT
** *
48311044 CAAAGGTACGGTGGAATTAG
66 CAAAGAAACGGTGGAATCAG
* *
48311064 CACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACATAGCAACCCCTTTCACAAT
1 CACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATCAACACATAGCAACCCCTTTCACAAT
48311129 CAAAGAAACGGTGGAATCAG
66 CAAAGAAACGGTGGAATCAG
* * * * * *
48311149 CACTTAGCAACCACCTTTAAAGTCAATAATTCGGGGAATTAACACTTAGCAACCCCT
1 CACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATCAACACATAGCAACCCCT
48311206 CGGGGAATCT
Statistics
Matches: 124, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
84 12 0.10
85 112 0.90
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (85 bp):
CACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATCAACACATAGCAACCCCTTTCACAAT
CAAAGAAACGGTGGAATCAG
Found at i:48318748 original size:85 final size:85
Alignment explanation
Indices: 48318605--48318927 Score: 497
Period size: 85 Copynumber: 3.8 Consensus size: 85
48318595 ATCCGTTACT
*
48318605 CGGT-GAATTCAGCACTTAGCAACCACC-TTAAATTCAGTGATACGGGGAATCAGCACATAGCAA
1 CGGTGGAA-TCAGCACTTAGCAACCACCTTTAAATTCAGTGATACAGGGAATCAGCACATAGCAA
* * *
48318668 CCCCTTTCACAGTCAAGGACA
65 CCCCTTTCACAATCAAAGATA
* *
48318689 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGATACAGGGAATAAGCACATAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAGTGATACAGGGAATCAGCACATAGCAAC
*
48318754 CCCTTTCACAATCAAAGATT
66 CCCTTTCACAATCAAAGATA
*
48318774 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGATACAGGGAATCAGCACATAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAGTGATACAGGGAATCAGCACATAGCAAC
48318839 CCCTTTCACAATCAAAGATA
66 CCCTTTCACAATCAAAGATA
* * * * * *
48318859 CGGTGGAATCAGCACTTAGCAACCACCTTTAAAGTCAATAATTCGGGGAATCAGCACTTAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAGTGATACAGGGAATCAGCACATAGCAAC
48318924 CCCT
66 CCCT
48318928 CGGGGAATCT
Statistics
Matches: 221, Mismatches: 16, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
84 23 0.10
85 198 0.90
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (85 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAGTGATACAGGGAATCAGCACATAGCAAC
CCCTTTCACAATCAAAGATA
Found at i:48318916 original size:42 final size:42
Alignment explanation
Indices: 48318613--48318924 Score: 321
Period size: 42 Copynumber: 7.4 Consensus size: 42
48318603 CTCGGTGAAT
*
48318613 TCAGCACTTAGCAACCACC-TTAAATTCAGTGATACGGGGAA
1 TCAGCACTTAGCAACCACCTTTAAATTCAATGATACGGGGAA
* * * * *
48318654 TCAGCACATAGCAACC-CCTTTCACAGTCAAGGACACGGTGGAA
1 TCAGCACTTAGCAACCACCTTT-AAATTCAATGATACGG-GGAA
* * *
48318697 TCAGCACTTAGCAACCACCTTTATATTCAGTGATACAGGGAA
1 TCAGCACTTAGCAACCACCTTTAAATTCAATGATACGGGGAA
* * * *
48318739 TAAGCACATAGCAACC-CCTTTCACAA-TCAAAGATTCGGTGGAA
1 TCAGCACTTAGCAACCACCTTT-A-AATTCAATGATACGG-GGAA
* * *
48318782 TCAGCACTTAGCAACCACCTTTATATTCAGTGATACAGGGAA
1 TCAGCACTTAGCAACCACCTTTAAATTCAATGATACGGGGAA
* *
48318824 TCAGCACATAGCAACC-CCTTTCACAA-TCAAAGATACGGTGGAA
1 TCAGCACTTAGCAACCACCTTT-A-AATTCAATGATACGG-GGAA
* * *
48318867 TCAGCACTTAGCAACCACCTTTAAAGTCAATAATTCGGGGAA
1 TCAGCACTTAGCAACCACCTTTAAATTCAATGATACGGGGAA
48318909 TCAGCACTTAGCAACC
1 TCAGCACTTAGCAACC
48318925 CCTCGGGGAA
Statistics
Matches: 221, Mismatches: 36, Indels: 27
0.78 0.13 0.10
Matches are distributed among these distances:
40 2 0.01
41 27 0.12
42 90 0.41
43 87 0.39
44 15 0.07
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.22
Consensus pattern (42 bp):
TCAGCACTTAGCAACCACCTTTAAATTCAATGATACGGGGAA
Found at i:48318941 original size:26 final size:26
Alignment explanation
Indices: 48318901--48318953 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
48318891 AGTCAATAAT
48318901 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACTTAGCAACCCC
*
48318927 TCGGGGAATCTGCACTTAGCAACCCC
1 TCGGGGAATCAGCACTTAGCAACCCC
48318953 T
1 T
48318954 TTTTATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.34, G:0.23, T:0.19
Consensus pattern (26 bp):
TCGGGGAATCAGCACTTAGCAACCCC
Found at i:48322947 original size:23 final size:23
Alignment explanation
Indices: 48322921--48322966 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
48322911 TGTGTTTTTA
48322921 CATGGCCTTTTTAACTTAAAATC
1 CATGGCCTTTTTAACTTAAAATC
48322944 CATGGCCTTTTTAACTTAAAATC
1 CATGGCCTTTTTAACTTAAAATC
48322967 ATTCTATTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (23 bp):
CATGGCCTTTTTAACTTAAAATC
Found at i:48330700 original size:22 final size:22
Alignment explanation
Indices: 48330675--48330719 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
48330665 TGATAAACTT
48330675 TAATATATA-ATTATATTATTTA
1 TAATATATATATTAT-TTATTTA
* *
48330697 TAATTTATATATTATTTTTTTA
1 TAATATATATATTATTTATTTA
48330719 T
1 T
48330720 CAACTTAGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (22 bp):
TAATATATATATTATTTATTTA
Found at i:48346952 original size:7 final size:7
Alignment explanation
Indices: 48346940--48347114 Score: 52
Period size: 7 Copynumber: 24.6 Consensus size: 7
48346930 TCAAAAAACA
48346940 TAAACCC
1 TAAACCC
48346947 TAAACCC
1 TAAACCC
* *
48346954 TTAGCCC
1 TAAACCC
48346961 -ATAACCC
1 TA-AACCC
*
48346968 TTAAACCT
1 -TAAACCC
48346976 TAAACCC
1 TAAACCC
*
48346983 -CAACCC
1 TAAACCC
*
48346989 TTAAACCA
1 -TAAACCC
48346997 TAAA-CC
1 TAAACCC
*
48347003 AAAATCCC
1 TAAA-CCC
48347011 TAAACCC
1 TAAACCC
* *
48347018 ATAATCCA
1 -TAAACCC
* *
48347026 TAATCCA
1 TAAACCC
*
48347033 TAAACCT
1 TAAACCC
***
48347040 TAAGATAG
1 TAA-ACCC
**
48347048 TAATTCC
1 TAAACCC
* *
48347055 TAAATCT
1 TAAACCC
48347062 TAAACCC
1 TAAACCC
* **
48347069 AAAACTA
1 TAAACCC
*
48347076 TATACCC
1 TAAACCC
*
48347083 TAAACCA
1 TAAACCC
48347090 TAAA-CC
1 TAAACCC
48347096 TAAACCC
1 TAAACCC
48347103 TAAAACCC
1 T-AAACCC
48347111 TAAA
1 TAAA
48347115 ACCAAAAATC
Statistics
Matches: 121, Mismatches: 36, Indels: 22
0.68 0.20 0.12
Matches are distributed among these distances:
6 14 0.12
7 77 0.64
8 29 0.24
9 1 0.01
ACGTcount: A:0.45, C:0.33, G:0.02, T:0.21
Consensus pattern (7 bp):
TAAACCC
Found at i:48346976 original size:21 final size:21
Alignment explanation
Indices: 48346963--48347002 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
48346953 CTTAGCCCAT
48346963 AACCCTTAAACCTTAAACCCC
1 AACCCTTAAACCTTAAACCCC
*
48346984 AACCCTTAAACCATAAACC
1 AACCCTTAAACCTTAAACC
48347003 AAAATCCCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.42, C:0.40, G:0.00, T:0.17
Consensus pattern (21 bp):
AACCCTTAAACCTTAAACCCC
Found at i:48347019 original size:22 final size:22
Alignment explanation
Indices: 48346990--48347038 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
48346980 CCCCAACCCT
*
48346990 TAAA-CCATAAACCAAAATCCC
1 TAAACCCATAAACCAAAATCCA
* *
48347011 TAAACCCATAATCCATAATCCA
1 TAAACCCATAAACCAAAATCCA
48347033 TAAACC
1 TAAACC
48347039 TTAAGATAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 4 0.17
22 20 0.83
ACGTcount: A:0.49, C:0.33, G:0.00, T:0.18
Consensus pattern (22 bp):
TAAACCCATAAACCAAAATCCA
Found at i:48347204 original size:15 final size:15
Alignment explanation
Indices: 48347169--48347217 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
48347159 CTTTAAATCG
48347169 TAAACCC-TAAACCA
1 TAAACCCATAAACCA
*
48347183 T-AACCCATAACCCA
1 TAAACCCATAAACCA
*
48347197 TAAACCCATAATCCA
1 TAAACCCATAAACCA
48347212 TAAACC
1 TAAACC
48347218 TTAAAATGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
13 5 0.16
14 8 0.26
15 18 0.58
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.16
Consensus pattern (15 bp):
TAAACCCATAAACCA
Found at i:48347222 original size:22 final size:21
Alignment explanation
Indices: 48347169--48347222 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
48347159 CTTTAAATCG
*
48347169 TAAACCCTAAACCATAACCCA
1 TAAACCATAAACCATAACCCA
* *
48347190 TAACCCATAAACCCATAATCCA
1 TAAACCATAAA-CCATAACCCA
*
48347212 TAAACCTTAAA
1 TAAACCATAAA
48347223 ATGGTAACAC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 9 0.33
22 18 0.67
ACGTcount: A:0.48, C:0.33, G:0.00, T:0.19
Consensus pattern (21 bp):
TAAACCATAAACCATAACCCA
Found at i:48347264 original size:14 final size:14
Alignment explanation
Indices: 48346919--48347280 Score: 110
Period size: 14 Copynumber: 24.9 Consensus size: 14
48346909 CCCTATCCCT
*
48346919 TAAACCCTAAATCA
1 TAAACCCTAAACCA
* * * *
48346933 AAAAACATAAACCC
1 TAAACCCTAAACCA
**
48346947 TAAACCCTTAGCCCA
1 TAAACCC-TAAACCA
*
48346962 T-AACCCTTAAACCT
1 TAAACCC-TAAACCA
* * *
48346976 TAAACCCCAACCCT
1 TAAACCCTAAACCA
*
48346990 TAAACCATAAACCA
1 TAAACCCTAAACCA
48347004 -AAATCCCTAAACCCA
1 TAAA-CCCTAAA-CCA
* * *
48347019 TAATCCATAATCCA
1 TAAACCCTAAACCA
* *
48347033 TAAACCTTAAGA-TA
1 TAAACCCTAA-ACCA
** * *
48347047 GTAATTCCTAAATCT
1 -TAAACCCTAAACCA
* *
48347062 TAAACCCAAAACTA
1 TAAACCCTAAACCA
*
48347076 TATACCCTAAACCA
1 TAAACCCTAAACCA
*
48347090 TAAA-CCTAAACCC
1 TAAACCCTAAACCA
48347103 TAAAACCCTAAAACCA
1 T-AAACCCT-AAACCA
* * *
48347119 AAAATCCTTAACACA
1 TAAACCCTAAAC-CA
*
48347134 T-AACCTCTAAACCT
1 TAAACC-CTAAACCA
* *
48347148 TAAACCCTAGCCTTTAAATCG
1 TAAA--C---CC--TAAACCA
48347169 TAAACCCTAAACCA
1 TAAACCCTAAACCA
*
48347183 T-AACCCATAACCCA
1 TAAACCC-TAAACCA
*
48347197 TAAACCCATAATCCA
1 TAAACCC-TAAACCA
*
48347212 TAAACCTTAAA--A
1 TAAACCCTAAACCA
* *
48347224 TGGTAACACCTAAACCT
1 T--AAAC-CCTAAACCA
*
48347241 TAAACTCTAAACCA
1 TAAACCCTAAACCA
* *
48347255 TATACCCTAAATCA
1 TAAACCCTAAACCA
*
48347269 AAAACCCTAAAC
1 TAAACCCTAAAC
48347281 TATAGTGATA
Statistics
Matches: 248, Mismatches: 72, Indels: 56
0.66 0.19 0.15
Matches are distributed among these distances:
12 2 0.01
13 17 0.07
14 137 0.55
15 69 0.28
16 9 0.04
17 2 0.01
19 2 0.01
20 1 0.00
21 9 0.04
ACGTcount: A:0.46, C:0.31, G:0.02, T:0.21
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:48347717 original size:41 final size:42
Alignment explanation
Indices: 48347650--48347902 Score: 173
Period size: 41 Copynumber: 6.1 Consensus size: 42
48347640 TAAAGCCCCA
* * *
48347650 GCTAAAGCCCCCGAGCATTAGCGGCG-CTTATTGGAAAACATC
1 GCTAAAGCCCCAGAGCATTAGCGGCGCCTT-TTGAAAAACACC
* *
48347692 GCTAAAG-CCCAGAGCATTAGTGGCGCCTTTTGAAAAACGCC
1 GCTAAAGCCCCAGAGCATTAGCGGCGCCTTTTGAAAAACACC
* * * * *
48347733 ACTAAAGCCCCA-AGCATTAACGACG-TTTTTGAAAAACGCC
1 GCTAAAGCCCCAGAGCATTAGCGGCGCCTTTTGAAAAACACC
* ** *
48347773 CCTAAAG--CTTGAGCATTAGCGGCGCGCTTTTCGAAAAACGCC
1 GCTAAAGCCCCAGAGCATTAGCGGCGC-CTTTT-GAAAAACACC
* *** * **
48347815 GCTAAATCCCC-GAGCATTAGC-GATTCTTTCCGAAAAATGCC
1 GCTAAAGCCCCAGAGCATTAGCGGCGCCTTT-TGAAAAACACC
* * * *
48347856 GCTAAAGCCCCA-AGCATTAGCGCCGCTTTTTTAAAAACGCC
1 GCTAAAGCCCCAGAGCATTAGCGGCGCCTTTTGAAAAACACC
*
48347897 GTTAAA
1 GCTAAA
48347903 ACCCTAAAAG
Statistics
Matches: 166, Mismatches: 34, Indels: 23
0.74 0.15 0.10
Matches are distributed among these distances:
38 1 0.01
39 11 0.07
40 20 0.12
41 90 0.54
42 33 0.20
43 10 0.06
44 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (42 bp):
GCTAAAGCCCCAGAGCATTAGCGGCGCCTTTTGAAAAACACC
Found at i:48347820 original size:123 final size:122
Alignment explanation
Indices: 48347662--48347896 Score: 278
Period size: 123 Copynumber: 1.9 Consensus size: 122
48347652 TAAAGCCCCC
* * * * *
48347662 GAGCATTAGCGGCGCTTATTGGAAAACATCGCTAAAGCCCAGAGCATTAGTGGCGCCTTT-TGAA
1 GAGCATTAGCGGCGCTTATTGAAAAACACCGCTAAAGCCCAGAGCATTAG-CGAGCCTTTCCGAA
48347726 AAACGCCACTAAAGCCCCAAGCATTAACGACG-TTTTTGAAAAACGCCCCTAAAGCTT
65 AAACGCCACTAAAGCCCCAAGCATTAACGACGCTTTTTGAAAAACGCCCCTAAAGCTT
* * * **
48347783 GAGCATTAGCGGCGCGCTT-TTCGAAAAACGCCGCTAAATCCCCGAGCATTAGCGATTCTTTCCG
1 GAGCATTAGC-G-GCGCTTATT-GAAAAACACCGCTAAAGCCCAGAGCATTAGCGAGCCTTTCCG
* * * * *
48347847 AAAAATGCCGCTAAAGCCCCAAGCATTAGCGCCGCTTTTTTAAAAACGCC
63 AAAAACGCCACTAAAGCCCCAAGCATTAACGACGCTTTTTGAAAAACGCC
48347897 GTTAAAACCC
Statistics
Matches: 94, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
121 10 0.11
122 8 0.09
123 62 0.66
124 14 0.15
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (122 bp):
GAGCATTAGCGGCGCTTATTGAAAAACACCGCTAAAGCCCAGAGCATTAGCGAGCCTTTCCGAAA
AACGCCACTAAAGCCCCAAGCATTAACGACGCTTTTTGAAAAACGCCCCTAAAGCTT
Found at i:48347883 original size:82 final size:78
Alignment explanation
Indices: 48347691--48347902 Score: 201
Period size: 82 Copynumber: 2.6 Consensus size: 78
48347681 TGGAAAACAT
* * *
48347691 CGCTAAAGCCCAGAGCATTAGTGGCGCCTTTTGAAAAACGCCACTAAAGCCCCAAGCATTAACGA
1 CGCTAAAGCCCA-AGCATTAGCGCCG-CTTTTGAAAAACGCCGCTAAAGCCCCAAGCATTAACGA
48347756 CGTTTTTGAAAAACGC
64 C-TTTTTGAAAAACGC
* *** * * *
48347772 CCCTAAAGCTTGAGCATTAGCGGCGCGCTTTTCGAAAAACGCCGCTAAATCCCCGAGCATTAGCG
1 CGCTAAAGCCCAAGCATTAGC-GC-CGCTTTT-GAAAAACGCCGCTAAAGCCCCAAGCATTAACG
*
48347837 A-TTCTTTCCGAAAAATGC
63 ACTT-TTT--GAAAAACGC
* *
48347855 CGCTAAAGCCCCAAGCATTAGCGCCGCTTTTTTAAAAACGCCGTTAAA
1 CGCTAAAG-CCCAAGCATTAGCGCCGC-TTTTGAAAAACGCCGCTAAA
48347903 ACCCTAAAAG
Statistics
Matches: 106, Mismatches: 17, Indels: 15
0.77 0.12 0.11
Matches are distributed among these distances:
80 10 0.09
81 17 0.16
82 48 0.45
83 21 0.20
84 10 0.09
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (78 bp):
CGCTAAAGCCCAAGCATTAGCGCCGCTTTTGAAAAACGCCGCTAAAGCCCCAAGCATTAACGACT
TTTTGAAAAACGC
Found at i:48348036 original size:39 final size:40
Alignment explanation
Indices: 48347969--48348053 Score: 111
Period size: 39 Copynumber: 2.1 Consensus size: 40
48347959 AGAAAATGGT
*
48347969 GCTAATGCTCTATTTTTAACGGCATTTTTCAAAAAGCGCC
1 GCTAATGCTCTAATTTTAACGGCATTTTTCAAAAAGCGCC
* * *
48348009 GCTAATGCTC-AATTTTAGA-GGCGTTTTTCTAAAAGCGCT
1 GCTAATGCTCTAATTTTA-ACGGCATTTTTCAAAAAGCGCC
48348048 GCTAAT
1 GCTAAT
48348054 TGTCGATTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
39 29 0.73
40 11 0.28
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (40 bp):
GCTAATGCTCTAATTTTAACGGCATTTTTCAAAAAGCGCC
Found at i:48350199 original size:41 final size:40
Alignment explanation
Indices: 48350126--48350205 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
48350116 AAGTTTTTGG
* *
48350126 GGTCTTTAGCGGCGTTTCTGAAAAGCGCCGCTAATGCTCA
1 GGTCTTTAGCGACATTTCTGAAAAGCGCCGCTAATGCTCA
* *
48350166 GGTCTTTAGCGACATTTTTTAATAAGCGCCGCTAATGCTC
1 GGTCTTTAGCGACATTTCTGAA-AAGCGCCGCTAATGCTC
48350206 GTACCTTTAG
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
40 18 0.51
41 17 0.49
ACGTcount: A:0.21, C:0.24, G:0.24, T:0.31
Consensus pattern (40 bp):
GGTCTTTAGCGACATTTCTGAAAAGCGCCGCTAATGCTCA
Found at i:48350214 original size:41 final size:40
Alignment explanation
Indices: 48350127--48350238 Score: 120
Period size: 41 Copynumber: 2.8 Consensus size: 40
48350117 AGTTTTTGGG
* * *
48350127 GTCTTTAGCGGCGTTTCTGAA-AAGCGCCGCTAATGCTCA
1 GTCTTTAGCGACATTTTTGAAGAAGCGCCGCTAATGCTCA
* *
48350166 GGTCTTTAGCGACATTTTTTAATAAGCGCCGCTAATGCTC-
1 -GTCTTTAGCGACATTTTTGAAGAAGCGCCGCTAATGCTCA
* *
48350206 GTACCTTTAGCGGCGTTTTTGAAGAAGCGCCGC
1 GT--CTTTAGCGACATTTTTGAAGAAGCGCCGC
48350239 AAAAACATTT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
39 2 0.03
40 17 0.28
41 42 0.69
ACGTcount: A:0.21, C:0.24, G:0.25, T:0.30
Consensus pattern (40 bp):
GTCTTTAGCGACATTTTTGAAGAAGCGCCGCTAATGCTCA
Found at i:48350687 original size:7 final size:7
Alignment explanation
Indices: 48350677--48350709 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
48350667 AAGGTTTATT
48350677 GGTTAGG
1 GGTTAGG
48350684 GGTTAGG
1 GGTTAGG
48350691 GGTTAGG
1 GGTTAGG
48350698 GGTTAGG
1 GGTTAGG
48350705 GGTTA
1 GGTTA
48350710 AAGGTTAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.15, C:0.00, G:0.55, T:0.30
Consensus pattern (7 bp):
GGTTAGG
Found at i:48350715 original size:14 final size:14
Alignment explanation
Indices: 48350684--48350717 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
48350674 ATTGGTTAGG
**
48350684 GGTTAGGGGTTAGG
1 GGTTAGGGGTTAAA
48350698 GGTTAGGGGTTAAA
1 GGTTAGGGGTTAAA
48350712 GGTTAG
1 GGTTAG
48350718 AAGTTTAAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.21, C:0.00, G:0.50, T:0.29
Consensus pattern (14 bp):
GGTTAGGGGTTAAA
Found at i:48350715 original size:21 final size:21
Alignment explanation
Indices: 48350677--48350717 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
48350667 AAGGTTTATT
**
48350677 GGTTAGGGGTTAGGGGTTAGG
1 GGTTAGGGGTTAAAGGTTAGG
48350698 GGTTAGGGGTTAAAGGTTAG
1 GGTTAGGGGTTAAAGGTTAG
48350718 AAGTTTAAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.00, G:0.51, T:0.29
Consensus pattern (21 bp):
GGTTAGGGGTTAAAGGTTAGG
Found at i:48350823 original size:66 final size:63
Alignment explanation
Indices: 48350746--48350892 Score: 195
Period size: 63 Copynumber: 2.3 Consensus size: 63
48350736 TTTGGTGTTA
* *
48350746 GGTTAGAGTTTAGGGTTTAGACTAATTAATATATTTTAAATTATATAATATTAAATAATGTTTAG
1 GGTTAGGGTTTAGGATTTAGACTAATTAATAT-TTTTAAATT-TAT-ATATTAAATAATGTTTAG
48350811 G
63 G
* * * *
48350812 GGTTAGGGTTTAGGATTTAGATTAATTAGTGTTTTTTAATTTATATATTAAATAATGTTTAGG
1 GGTTAGGGTTTAGGATTTAGACTAATTAATATTTTTAAATTTATATATTAAATAATGTTTAGG
*
48350875 GGTTAGGGGTTAGTGATT
1 GGTTAGGGTTTAG-GATT
48350893 CGGGGTCGAG
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
63 31 0.42
64 7 0.10
65 8 0.11
66 27 0.37
ACGTcount: A:0.32, C:0.01, G:0.22, T:0.46
Consensus pattern (63 bp):
GGTTAGGGTTTAGGATTTAGACTAATTAATATTTTTAAATTTATATATTAAATAATGTTTAGG
Found at i:48351017 original size:28 final size:28
Alignment explanation
Indices: 48350957--48351025 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 28
48350947 ATTAAATAAT
* * *
48350957 GTTTAGGGTTTAGGGGTAGGGGTTTGGA
1 GTTTAGGGTTTAGGGGTAAGAGTTAGGA
*
48350985 GTTTAGGGTTTAGGGTTAAGAGTTAGTGA
1 GTTTAGGGTTTAGGGGTAAGAGTTAG-GA
*
48351014 -TTTAAGGTTTAG
1 GTTTAGGGTTTAG
48351026 AGATTAAGGT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
28 33 0.94
29 2 0.06
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (28 bp):
GTTTAGGGTTTAGGGGTAAGAGTTAGGA
Found at i:48351682 original size:21 final size:20
Alignment explanation
Indices: 48351643--48351687 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
48351633 GGACAGGACC
48351643 AAAATATAAGAAAAAATAAA
1 AAAATATAAGAAAAAATAAA
48351663 AAAATATAA-AAAGGAAATAAA
1 AAAATATAAGAAA--AAATAAA
48351684 AAAA
1 AAAA
48351688 CTAAAATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 3 0.13
20 9 0.39
21 11 0.48
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (20 bp):
AAAATATAAGAAAAAATAAA
Found at i:48353238 original size:33 final size:33
Alignment explanation
Indices: 48353201--48353263 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
48353191 GATCTTTAAG
**
48353201 TTGGTTATATTTTTTTTGTATAGTTTAATTTTT
1 TTGGTTATATTTTAGTTGTATAGTTTAATTTTT
48353234 TTGGTTATATTTTAGTTGTATAGTTTAATT
1 TTGGTTATATTTTAGTTGTATAGTTTAATT
48353264 ATTATTTTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.21, C:0.00, G:0.14, T:0.65
Consensus pattern (33 bp):
TTGGTTATATTTTAGTTGTATAGTTTAATTTTT
Found at i:48354203 original size:18 final size:16
Alignment explanation
Indices: 48354161--48354193 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
48354151 AAACTTGTAG
48354161 AAATAAGTTTGAAGAT
1 AAATAAGTTTGAAGAT
48354177 AAATAAGTTTGAAGAT
1 AAATAAGTTTGAAGAT
48354193 A
1 A
48354194 TAATTGAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.18, T:0.30
Consensus pattern (16 bp):
AAATAAGTTTGAAGAT
Found at i:48354268 original size:9 final size:9
Alignment explanation
Indices: 48354256--48354731 Score: 109
Period size: 9 Copynumber: 52.1 Consensus size: 9
48354246 TTAAAATAGT
48354256 TAACTTACA
1 TAACTTACA
48354265 TAACTTA-A
1 TAACTTACA
48354273 TTAA-TTA-A
1 -TAACTTACA
* *
48354281 T-ATTATATA
1 TAACT-TACA
48354290 TAACTTACA
1 TAACTTACA
48354299 TAACTTAC-
1 TAACTTACA
48354307 -AACTTACA
1 TAACTTACA
48354315 TAACTTACA
1 TAACTTACA
*
48354324 TTAATATTAAACA
1 -TAA-CTT--ACA
*
48354337 TAAATTACA
1 TAACTTACA
48354346 TAACTTACA
1 TAACTTACA
*
48354355 TTAATATTATACA
1 -T-A-ACT-TACA
*
48354368 TAAATTACA
1 TAACTTACA
48354377 TAACTTA-A
1 TAACTTACA
48354385 TTAA-TTA-A
1 -TAACTTACA
*
48354393 -AA--TACCG
1 TAACTTA-CA
*
48354400 GAA-TTACA
1 TAACTTACA
48354408 TAACTTACA
1 TAACTTACA
*
48354417 TTAATATTATACA
1 -T-A-ACT-TACA
*
48354430 TAAATTACA
1 TAACTTACA
48354439 TAACTTA-A
1 TAACTTACA
48354447 TTAA-TTA-A
1 -TAACTTACA
48354455 T-A-TTAGACA
1 TAACTT--ACA
*
48354464 TAAATTACA
1 TAACTTACA
*
48354473 TAACTTGCA
1 TAACTTACA
*
48354482 TTAATATTATACA
1 -T-A-ACT-TACA
*
48354495 TAAATTACA
1 TAACTTACA
*
48354504 TGACTTA-A
1 TAACTTACA
48354512 TTAA-TTA-A
1 -TAACTTACA
*
48354520 T-ATTATACA
1 TAACT-TACA
*
48354529 TAAATTACA
1 TAACTTACA
48354538 TAACTTACA
1 TAACTTACA
*
48354547 TTAATGCAATACA
1 -TAA--C-TTACA
*
48354560 TAAATTACA
1 TAACTTACA
48354569 TAACTTA-A
1 TAACTTACA
48354577 TTAA-TTA-A
1 -TAACTTACA
*
48354585 T-ATTATACA
1 TAACT-TACA
48354594 TAACTTACA
1 TAACTTACA
48354603 TAACTTACA
1 TAACTTACA
***
48354612 TTTTTTTA-A
1 -TAACTTACA
*
48354621 TTA-TT-CA
1 TAACTTACA
*
48354628 TAAATTACA
1 TAACTTACA
48354637 TAACTTACA
1 TAACTTACA
*
48354646 TTAATGCAATACA
1 -TAA--C-TTACA
*
48354659 TAAATTACA
1 TAACTTACA
48354668 TAA-TTA-A
1 TAACTTACA
*
48354675 TTAATATTATACA
1 -T-A-ACT-TACA
48354688 TAACTTACA
1 TAACTTACA
48354697 TAACTTAC-
1 TAACTTACA
48354705 -AACTTACA
1 TAACTTACA
48354713 TAACTTACA
1 TAACTTACA
48354722 TAACTTACA
1 TAACTTACA
48354731 T
1 T
48354732 TGTGGGTACA
Statistics
Matches: 364, Mismatches: 38, Indels: 130
0.68 0.07 0.24
Matches are distributed among these distances:
5 2 0.01
6 8 0.02
7 27 0.07
8 45 0.12
9 189 0.52
10 32 0.09
11 15 0.04
12 23 0.06
13 23 0.06
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
TAACTTACA
Found at i:48354312 original size:16 final size:16
Alignment explanation
Indices: 48354291--48354323 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
48354281 TATTATATAT
48354291 AACTTACATAACTTAC
1 AACTTACATAACTTAC
48354307 AACTTACATAACTTAC
1 AACTTACATAACTTAC
48354323 A
1 A
48354324 TTAATATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.30
Consensus pattern (16 bp):
AACTTACATAACTTAC
Found at i:48354348 original size:31 final size:31
Alignment explanation
Indices: 48354310--48354705 Score: 447
Period size: 31 Copynumber: 12.5 Consensus size: 31
48354300 AACTTACAAC
*
48354310 TTACATAACTTACATTAATATTAAACATAAA
1 TTACATAACTTACATTAATATTATACATAAA
48354341 TTACATAACTTACATTAATATTATACATAAA
1 TTACATAACTTACATTAATATTATACATAAA
** ***
48354372 TTACATAACTTA-ATTAATTAAAATACCGGAA
1 TTACATAACTTACATTAA-TATTATACATAAA
48354403 TTACATAACTTACATTAATATTATACATAAA
1 TTACATAACTTACATTAATATTATACATAAA
* *
48354434 TTACATAACTTAATTAATTAATATTAGACATAAA
1 TTACATAACTT-A--CATTAATATTATACATAAA
*
48354468 TTACATAACTTGCATTAATATTATACATAAA
1 TTACATAACTTACATTAATATTATACATAAA
* *
48354499 TTACATGACTTAATTAATTAATATTATACATAAA
1 TTACATAACTT-A--CATTAATATTATACATAAA
***
48354533 TTACATAACTTACATTAATGCAATACATAAA
1 TTACATAACTTACATTAATATTATACATAAA
* *
48354564 TTACATAACTTAATTAATTAATATTATACATAAC
1 TTACATAACTT-A--CATTAATATTATACATAAA
** *
48354598 TTACATAACTTACATTTTTTTAATTATTCATAAA
1 TTACATAACTTACA--TTAAT-ATTATACATAAA
***
48354632 TTACATAACTTACATTAATGCAATACATAAA
1 TTACATAACTTACATTAATATTATACATAAA
*
48354663 TTACATAA-TTA-ATTAATATTATACATAAC
1 TTACATAACTTACATTAATATTATACATAAA
48354692 TTACATAACTTACA
1 TTACATAACTTACA
48354706 ACTTACATAA
Statistics
Matches: 305, Mismatches: 44, Indels: 32
0.80 0.12 0.08
Matches are distributed among these distances:
29 22 0.07
30 11 0.04
31 152 0.50
32 10 0.03
33 5 0.02
34 105 0.34
ACGTcount: A:0.47, C:0.13, G:0.02, T:0.38
Consensus pattern (31 bp):
TTACATAACTTACATTAATATTATACATAAA
Found at i:48354510 original size:65 final size:65
Alignment explanation
Indices: 48354323--48354703 Score: 510
Period size: 65 Copynumber: 5.9 Consensus size: 65
48354313 CATAACTTAC
*
48354323 ATTAATATTAAACATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTTAATTA
1 ATTAATATTATACATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTTAATTA
***
48354388 ATTAA-A--ATACCGGAATTACATAACTTACATTAATATTATACATAAATTACATAACTTAATTA
1 ATTAATATTATACATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTTAATTA
* * *
48354450 ATTAATATTAGACATAAATTACATAACTTGCATTAATATTATACATAAATTACATGACTTAATTA
1 ATTAATATTATACATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTTAATTA
***
48354515 ATTAATATTATACATAAATTACATAACTTACATTAATGCAATACATAAATTACATAACTTAATTA
1 ATTAATATTATACATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTTAATTA
* ** *
48354580 ATTAATATTATACATAACTTACATAACTTACATTTTTTTAATTATTCATAAATTACATAACTTAC
1 ATTAATATTATACATAAATTACATAACTTACA--TTAAT-ATTATACATAAATTACATAACTTA-
48354645 ATTA
62 ATTA
** *
48354649 A-T-GCA--ATACATAAATTACATAA-TTA-ATTAATATTATACATAACTTACATAACTTA
1 ATTAATATTATACATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTTA
48354704 CAACTTACAT
Statistics
Matches: 279, Mismatches: 30, Indels: 19
0.85 0.09 0.06
Matches are distributed among these distances:
60 22 0.08
61 3 0.01
62 57 0.20
63 2 0.01
64 4 0.01
65 161 0.58
67 4 0.01
68 21 0.08
69 5 0.02
ACGTcount: A:0.48, C:0.12, G:0.02, T:0.39
Consensus pattern (65 bp):
ATTAATATTATACATAAATTACATAACTTACATTAATATTATACATAAATTACATAACTTAATTA
Found at i:48354710 original size:16 final size:17
Alignment explanation
Indices: 48354684--48354731 Score: 71
Period size: 16 Copynumber: 2.8 Consensus size: 17
48354674 ATTAATATTA
48354684 TACATAACTTACATAACT
1 TACA-AACTTACATAACT
48354702 TAC-AACTTACATAACT
1 TACAAACTTACATAACT
48354718 TACATAACTTACAT
1 TACA-AACTTACAT
48354732 TGTGGGTACA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
16 16 0.57
18 12 0.43
ACGTcount: A:0.44, C:0.23, G:0.00, T:0.33
Consensus pattern (17 bp):
TACAAACTTACATAACT
Found at i:48358412 original size:12 final size:12
Alignment explanation
Indices: 48358376--48358415 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
48358366 AGCAGAGGTC
*
48358376 GCAGTGAGAGAA
1 GCAGCGAGAGAA
*
48358388 ACAGCGAGAGAA
1 GCAGCGAGAGAA
*
48358400 GCAGCGATAGAA
1 GCAGCGAGAGAA
48358412 GCAG
1 GCAG
48358416 AGGTTCAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.42, C:0.15, G:0.38, T:0.05
Consensus pattern (12 bp):
GCAGCGAGAGAA
Found at i:48358926 original size:43 final size:43
Alignment explanation
Indices: 48358822--48359072 Score: 282
Period size: 43 Copynumber: 5.9 Consensus size: 43
48358812 GTTTGTGAAA
*
48358822 TAAGCGCCGCTAAAGAACACT-A-CTTTTAGCGGCGTTTT-TGACC
1 TAAGCGCCGCTAAAGAACA-TGATC-TTTAGCGGCGTTTTCT-TCC
* * *
48358865 -AAGCGCCGCTATAGAACATTA-CTTTTAGCGACGTTTTCTTCC
1 TAAGCGCCGCTAAAGAACATGATC-TTTAGCGGCGTTTTCTTCC
* * * *
48358907 TAAGCGCTGCTAAAGAACATGATCCTTAGCGGCATTTTCTTTC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCTTCC
* *
48358950 TAAGCGACGCTAAAGAACATGATCTTTAGCGGCGTTTAC-TCC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCTTCC
*
48358992 AAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTAT-TTCC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT-TCTTCC
* * *
48359035 TGAGCGCCGCAAAAGAACATGATCTTTAACGGCGTTTT
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTT
48359073 TTTTCTGTAA
Statistics
Matches: 179, Mismatches: 23, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
41 1 0.01
42 73 0.41
43 104 0.58
44 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (43 bp):
TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCTTCC
Found at i:48358997 original size:85 final size:86
Alignment explanation
Indices: 48358823--48359071 Score: 260
Period size: 85 Copynumber: 2.9 Consensus size: 86
48358813 TTTGTGAAAT
* * * *
48358823 AAGCGCCGCTAAAGAACACT-A-CTTTTAGCGGCGTTT-TTGACC-AAGCGCCGCTATAGAACAT
1 AAGCGCCGCTAAAGAACA-TGATC-CTTAGCGGCATTTATT-TCCTAAGCGCCGCTAAAGAACAT
* * * *
48358884 TA-CTTTTAGCGACGTTTTCTTCCT
63 GATC-TTTAGCGGCGTTTACTTCCA
* * *
48358908 AAGCGCTGCTAAAGAACATGATCCTTAGCGGCATTT-TCTTTCTAAGCGACGCTAAAGAACATGA
1 AAGCGCCGCTAAAGAACATGATCCTTAGCGGCATTTAT-TTCCTAAGCGCCGCTAAAGAACATGA
48358972 TCTTTAGCGGCGTTTAC-TCCA
65 TCTTTAGCGGCGTTTACTTCCA
* * * *
48358993 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCCTGAGCGCCGCAAAAGAACATGAT
1 AAGCGCCGCTAAAGAACATGATCCTTAGCGGCATTTATTTCCTAAGCGCCGCTAAAGAACATGAT
*
48359058 CTTTAACGGCGTTT
66 CTTTAGCGGCGTTT
48359072 TTTTTCTGTA
Statistics
Matches: 139, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
84 1 0.01
85 103 0.74
86 34 0.24
87 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (86 bp):
AAGCGCCGCTAAAGAACATGATCCTTAGCGGCATTTATTTCCTAAGCGCCGCTAAAGAACATGAT
CTTTAGCGGCGTTTACTTCCA
Found at i:48359050 original size:128 final size:127
Alignment explanation
Indices: 48358822--48359078 Score: 308
Period size: 128 Copynumber: 2.0 Consensus size: 127
48358812 GTTTGTGAAA
* * * *
48358822 TAAGCGCCGCTAAAGAACACTACTTTTAGCGGCGTTTTTGACCAAGCGCCGCTATAGAACATTAC
1 TAAGCGACGCTAAAGAACACTACTTTTAGCGGCGTTTCT-ACCAAGCGCCGCTAAAGAACATGAC
* * *
48358887 TTTTAGCGACGTTTTCTTCCTAAGCGCTGCTAAAGAACATGATCCTTAGCGGCATTTTCTTTC
65 TTTTAGCGACGTTTTCTTCCTAAGCGCCGCAAAAGAACATGATCCTTAACGGCATTTTCTTTC
48358950 TAAGCGACGCTAAAGAACA-TGA-TCTTTAGCGGCGTTTACT-CCAAAGCGCCGCTAAAGAACAT
1 TAAGCGACGCTAAAGAACACT-ACT-TTTAGCGGCGTTT-CTACC-AAGCGCCGCTAAAGAACAT
* * * * *
48359012 GA-TCTTTAGCGGCGTTTAT-TTCCTGAGCGCCGCAAAAGAACATGATCTTTAACGGCGTTTTTT
62 GACT-TTTAGCGACGTTT-TCTTCCTAAGCGCCGCAAAAGAACATGATCCTTAACGGCATTTTCT
48359075 TTC
125 TTC
48359078 T
1 T
48359079 GTAAGCGCCG
Statistics
Matches: 111, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
127 5 0.05
128 104 0.94
129 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (127 bp):
TAAGCGACGCTAAAGAACACTACTTTTAGCGGCGTTTCTACCAAGCGCCGCTAAAGAACATGACT
TTTAGCGACGTTTTCTTCCTAAGCGCCGCAAAAGAACATGATCCTTAACGGCATTTTCTTTC
Found at i:48362230 original size:43 final size:42
Alignment explanation
Indices: 48362085--48362239 Score: 143
Period size: 43 Copynumber: 3.6 Consensus size: 42
48362075 TCATACAATA
* * * * * *
48362085 CCAACATCCCAAACGTGGTCTTACATGTAATCAAATAACTATG
1 CCAACGTCCCAGACATGGTCTTACACGTAATCAAAT-ACGACG
* * **
48362128 -CTACTGTCCCAGACAGGGTCTTACACGTAATCATGTACGACG
1 CCAAC-GTCCCAGACATGGTCTTACACGTAATCAAATACGACG
* * *
48362170 CCAATGTCCTAGACATGGTCTTACACGTAAACTCAAAT-CGATG
1 CCAACGTCCCAGACATGGTCTTACACGT-AA-TCAAATACGACG
48362213 CCAACGTCCCAGACATGGTCTTACACG
1 CCAACGTCCCAGACATGGTCTTACACG
48362240 ATATCACATT
Statistics
Matches: 89, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
42 28 0.31
43 57 0.64
44 4 0.04
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (42 bp):
CCAACGTCCCAGACATGGTCTTACACGTAATCAAATACGACG
Found at i:48364408 original size:20 final size:20
Alignment explanation
Indices: 48364383--48364423 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
48364373 TGAAGACGAA
*
48364383 TTTAAATATGATAAAACAAT
1 TTTAAAAATGATAAAACAAT
*
48364403 TTTAAAAATGATAAAATAAT
1 TTTAAAAATGATAAAACAAT
48364423 T
1 T
48364424 ATAATAAAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.37
Consensus pattern (20 bp):
TTTAAAAATGATAAAACAAT
Found at i:48366116 original size:44 final size:44
Alignment explanation
Indices: 48366068--48366357 Score: 196
Period size: 44 Copynumber: 6.6 Consensus size: 44
48366058 TGTCTTCGAT
* *
48366068 CTACTCCACTACTGCTTAGGGAGATAAGATCTGAAATTTTCAAC
1 CTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAAC
** * ** * *
48366112 CTACTCCGTTACTGCTCAGGGAGATAAG-TCTTGTGA-CTTAAAT
1 CTACTCCACTACTGCTTAGGGAGATAAGATC-TGCAATCTTCAAC
* * * ** * * *
48366155 CTGCTTCC-CTACT-CATGGGGAAGATAAGAT-TCGCCGTCCTCGAT
1 CTAC-TCCACTACTGCTTAGGG-AGATAAGATCT-GCAATCTTCAAC
* * *
48366199 CTGCTCCACTACTGCTTAAGGAGATAAGATCTGCAATTTTCAAC
1 CTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAAC
* * *** * *
48366243 CTACCCCACTACTGCTTAGGGAGATAAG-GCTGGTGTCTTCGAT
1 CTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAAC
* * * * *
48366286 CTGCTCCACTACTTCTTAGGGAGATAAGATCTGTAGTTTTCAAC
1 CTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAAC
* *
48366330 CTACTCCACTGCTGTTTAGGGAGATAAG
1 CTACTCCACTACTGCTTAGGGAGATAAG
48366358 GCTTGTGACT
Statistics
Matches: 185, Mismatches: 51, Indels: 20
0.72 0.20 0.08
Matches are distributed among these distances:
42 5 0.03
43 57 0.31
44 118 0.64
45 5 0.03
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (44 bp):
CTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAAC
Found at i:48366285 original size:87 final size:87
Alignment explanation
Indices: 48366194--48366360 Score: 271
Period size: 87 Copynumber: 1.9 Consensus size: 87
48366184 TTCGCCGTCC
48366194 TCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGCAATTTTCAACCTACCCCACTACTGCT
1 TCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGCAATTTTCAACCTACCCCACTACTGCT
48366259 TAGGGAGATAAGGCTGGTGTCT
66 TAGGGAGATAAGGCTGGTGTCT
* * * * * * *
48366281 TCGATCTGCTCCACTACTTCTTAGGGAGATAAGATCTGTAGTTTTCAACCTACTCCACTGCTGTT
1 TCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGCAATTTTCAACCTACCCCACTACTGCT
48366346 TAGGGAGATAAGGCT
66 TAGGGAGATAAGGCT
48366361 TGTGACTTAA
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 73 1.00
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.31
Consensus pattern (87 bp):
TCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGCAATTTTCAACCTACCCCACTACTGCT
TAGGGAGATAAGGCTGGTGTCT
Found at i:48366288 original size:131 final size:131
Alignment explanation
Indices: 48366063--48366315 Score: 348
Period size: 131 Copynumber: 1.9 Consensus size: 131
48366053 TTCACTGTCT
* * **
48366063 TCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAAATTTTCAACCTACTCCGTTACTGCT
1 TCGATCTACTCCACTACTGCTTAAGGAGATAAGATCTGAAATTTTCAACCTACCCCACTACTGCT
* * *
48366128 CAGGGAGATAAGTCTTGTGACTTAAATCTGCTTCC-CTAC-TCATGGGGAAGATAAGATTCGCCG
66 CAGGGAGATAAGGCTGGTGACTTAAATCTGC-TCCACTACTTCATAGGG-AGATAAGATTCGCCG
48366191 TCC
129 TCC
* *
48366194 TCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGCAATTTTCAACCTACCCCACTACTGCT
1 TCGATCTACTCCACTACTGCTTAAGGAGATAAGATCTGAAATTTTCAACCTACCCCACTACTGCT
* * ** *
48366259 TAGGGAGATAAGGCTGGTGTCTTCGATCTGCTCCACTACTTCTTAGGGAGATAAGAT
66 CAGGGAGATAAGGCTGGTGACTTAAATCTGCTCCACTACTTCATAGGGAGATAAGAT
48366316 CTGTAGTTTT
Statistics
Matches: 106, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
130 3 0.03
131 97 0.92
132 6 0.06
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (131 bp):
TCGATCTACTCCACTACTGCTTAAGGAGATAAGATCTGAAATTTTCAACCTACCCCACTACTGCT
CAGGGAGATAAGGCTGGTGACTTAAATCTGCTCCACTACTTCATAGGGAGATAAGATTCGCCGTC
C
Found at i:48366337 original size:131 final size:131
Alignment explanation
Indices: 48366068--48366357 Score: 334
Period size: 131 Copynumber: 2.2 Consensus size: 131
48366058 TGTCTTCGAT
* **
48366068 CTACTCCACTACTGCTTAGGGAGATAAGATCTGAAATTTTCAACCTACTCCGTTACTGCTCAGGG
1 CTACTCCACTACTGCTTAGGGAGATAAGATCTGAAATTTTCAACCTACCCCACTACTGCTCAGGG
* * * * *
48366133 AGATAAGTCTTGTGACTTAAATCTGCTTCCCTACTCATGGGGAAGATAAGATTCGCCGTCCTCGA
66 AGATAAGGCTGGTGACTTAAATCTGCTTCCCTACTCATAGGGAAGATAAGATTCGCAGTCCTCAA
*
48366198 T
131 C
* * * *
48366199 CTGCTCCACTACTGCTTAAGGAGATAAGATCTGCAATTTTCAACCTACCCCACTACTGCTTAGGG
1 CTACTCCACTACTGCTTAGGGAGATAAGATCTGAAATTTTCAACCTACCCCACTACTGCTCAGGG
* ** * * **
48366264 AGATAAGGCTGGTGTCTTCGATCTGC-TCCACTACTTCTTAGGG-AGATAAGA-TCTGTAGTTTT
66 AGATAAGGCTGGTGACTTAAATCTGCTTCC-CTAC-TCATAGGGAAGATAAGATTC-GCAGTCCT
48366326 CAAC
128 CAAC
* *
48366330 CTACTCCACTGCTGTTTAGGGAGATAAG
1 CTACTCCACTACTGCTTAGGGAGATAAG
48366358 GCTTGTGACT
Statistics
Matches: 132, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
130 5 0.04
131 121 0.92
132 6 0.05
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (131 bp):
CTACTCCACTACTGCTTAGGGAGATAAGATCTGAAATTTTCAACCTACCCCACTACTGCTCAGGG
AGATAAGGCTGGTGACTTAAATCTGCTTCCCTACTCATAGGGAAGATAAGATTCGCAGTCCTCAA
C
Found at i:48366631 original size:44 final size:44
Alignment explanation
Indices: 48366557--48366888 Score: 262
Period size: 44 Copynumber: 7.6 Consensus size: 44
48366547 AATCCACTCT
* * *
48366557 ACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCC
1 ACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGCTCC
*
48366601 GCTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGCTCC
1 ACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGCTCC
* * * ** **
48366645 ACTGTAACCTCAGGGAGATAAGATTTGAAAT-TCTTCGGTCTTTTCC
1 ACTGTAATCTCAGGGAGATAAGATTT---CTGGCTTCAATCTGCTCC
* ** * * * * *
48366691 ACTGTAATCTCAAGGAGATAA-A-ACCT-GATGCGATCTACTCT
1 ACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGCTCC
* * ** * *
48366732 ACTGTAATTTCAGAGAGATAAGATCCTT-T-ATTTTAATCCGCTCC
1 ACTGTAATCTCAGGGAGATAAGAT--TTCTGGCTTCAATCTGCTCC
* * * * * *
48366776 ACTATAATCTTAGGGAAATAAGATTACTGGCTTTAATCTGCTCT
1 ACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGCTCC
* *
48366820 ACTGAAATCTTAGGGAGATAAGATTTCTGGCTTCAATCTGCTCC
1 ACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGCTCC
* *
48366864 GCTGTAACCTCAGGGAGATAAGATT
1 ACTGTAATCTCAGGGAGATAAGATT
48366889 CTTCAGTCTA
Statistics
Matches: 222, Mismatches: 57, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
41 27 0.12
42 2 0.01
43 1 0.00
44 161 0.73
45 1 0.00
46 29 0.13
47 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (44 bp):
ACTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGCTCC
Found at i:48366846 original size:219 final size:218
Alignment explanation
Indices: 48366448--48367045 Score: 865
Period size: 212 Copynumber: 2.8 Consensus size: 218
48366438 GCCTGGGAAG
* * *
48366448 TAAGATTTGAAATTCTTCAATCTATTCCCCTGTAATCTCAGGGAGATAAGACCTGATACGATCTA
1 TAAGATTTGAAATTCTTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTA
* *
48366513 CTCTACTG---TTCAGAGAGATAAGATCCTTTATTTTAATCCACTCTACTGTAATCTCAGGGAAA
66 CTCTACTGTAATTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAA
* * *
48366575 TAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCT
131 TAGGATTACTGGCTTTAATCTGCTCCACTGAAATCTCAGGGAGATAAGATTTCTGGCTTCAATCT
48366640 GCTCCACTGTAACCTCAGGGAGA
196 GCTCCACTGTAACCTCAGGGAGA
* * * *
48366663 TAAGATTTGAAATTCTTCGGTCTTTTCCACTGTAATCTCAAGGAGATAAAACCTGATGCGATCTA
1 TAAGATTTGAAATTCTTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTA
* *
48366728 CTCTACTGTAATTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTATAATCTTAGGGAA
66 CTCTACTGTAA-TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAA
* * *
48366793 ATAAGATTACTGGCTTTAATCTGCTCTACTGAAATCTTAGGGAGATAAGATTTCTGGCTTCAATC
130 ATAGGATTACTGGCTTTAATCTGCTCCACTGAAATCTCAGGGAGATAAGATTTCTGGCTTCAATC
*
48366858 TGCTCCGCTGTAACCTCAGGGAGA
195 TGCTCCACTGTAACCTCAGGGAGA
* * *
48366882 T-A-A---G--ATTCTTCAGTCTATTCCACTATAATATCAGGGAGATAAGACCTAATGCGATCTA
1 TAAGATTTGAAATTCTTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTA
* * *
48366940 CTCTACTGTAAATTCAAAGAGATAAGATCCTTTATTTTAATTCGCTCCACTGTAATCTCAAGGAA
66 CTCTACTGT-AATTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAA
** *
48367005 ATAGGATTACTGGCTTTAATCTGCTCCGTTGTAATCTCAGG
130 ATAGGATTACTGGCTTTAATCTGCTCCACTGAAATCTCAGG
48367046 AAGGTAATAT
Statistics
Matches: 342, Mismatches: 36, Indels: 13
0.87 0.09 0.03
Matches are distributed among these distances:
212 139 0.41
213 2 0.01
214 1 0.00
215 66 0.19
217 1 0.00
218 1 0.00
219 132 0.39
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.33
Consensus pattern (218 bp):
TAAGATTTGAAATTCTTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTA
CTCTACTGTAATTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAA
TAGGATTACTGGCTTTAATCTGCTCCACTGAAATCTCAGGGAGATAAGATTTCTGGCTTCAATCT
GCTCCACTGTAACCTCAGGGAGA
Found at i:48403636 original size:26 final size:26
Alignment explanation
Indices: 48403606--48403688 Score: 121
Period size: 26 Copynumber: 3.2 Consensus size: 26
48403596 ACCAACACAC
*
48403606 CAATATCGCAGCAAAGCTGCCAGTAA
1 CAATAACGCAGCAAAGCTGCCAGTAA
*
48403632 TAATAACGCAGCAAAGCTGCCAGTAA
1 CAATAACGCAGCAAAGCTGCCAGTAA
* * *
48403658 CAGTAACGCAGTAAAGCTACCAGTAA
1 CAATAACGCAGCAAAGCTGCCAGTAA
48403684 CAATA
1 CAATA
48403689 TATGTGGCTA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.42, C:0.24, G:0.18, T:0.16
Consensus pattern (26 bp):
CAATAACGCAGCAAAGCTGCCAGTAA
Found at i:48403900 original size:27 final size:27
Alignment explanation
Indices: 48403865--48403944 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
48403855 TTTCATCTCC
*
48403865 TAGAGGTATAACGATCATTTTATCCTA
1 TAGAGGTATAACGATCATTTTACCCTA
*
48403892 TAG-GAGTATAACGGTCATTTTACCCTA
1 TAGAG-GTATAACGATCATTTTACCCTA
**
48403919 TAGAGGTATTTCGATCATTTTACCCT
1 TAGAGGTATAACGATCATTTTACCCT
48403945 TCGATGGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 1 0.02
27 44 0.96
28 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (27 bp):
TAGAGGTATAACGATCATTTTACCCTA
Found at i:48403953 original size:27 final size:27
Alignment explanation
Indices: 48403908--48404099 Score: 180
Period size: 27 Copynumber: 7.1 Consensus size: 27
48403898 TATAACGGTC
* *
48403908 ATTTTACCCTATAGA-GGTATTTCGATC
1 ATTTTACCCT-TCGAGGGTATTTCGATA
*
48403935 ATTTTACCCTTCGATGGTATTTC-AGTA
1 ATTTTACCCTTCGAGGGTATTTCGA-TA
48403962 ATTTTACCCTTCGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
48403989 ATTTTACCCTTCGAGGGTATTT-TAGTA
1 ATTTTACCCTTCGAGGGTATTTCGA-TA
** * * *
48404016 ATTTTACTTTTAG-GGGTATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* * *
48404042 ATTTTACCCTTTGAGGTTATTT-TACTA
1 ATTTTACCCTTCGAGGGTATTTCGA-TA
*
48404069 ATTTTACCCTTTTG-GGGTATTTCGATA
1 ATTTTACCC-TTCGAGGGTATTTCGATA
48404096 ATTT
1 ATTT
48404100 ATGGCATATT
Statistics
Matches: 139, Mismatches: 17, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
26 25 0.18
27 108 0.78
28 6 0.04
ACGTcount: A:0.22, C:0.15, G:0.17, T:0.47
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGATA
Found at i:48403966 original size:54 final size:53
Alignment explanation
Indices: 48403908--48404099 Score: 226
Period size: 54 Copynumber: 3.6 Consensus size: 53
48403898 TATAACGGTC
* * *
48403908 ATTTTACCCTATAGAGGTATTTCGATCATTTTACCCTTCGATGGTATTTCAGTA
1 ATTTTACCCTTTAGAGGTATTTCGATAATTTTACCCTTCGA-GGTATTTTAGTA
*
48403962 ATTTTACCC-TTCGAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTTAGTA
1 ATTTTACCCTTTAGA-GGTATTTCGATAATTTTACCCTTCGA-GGTATTTTAGTA
* * * * * *
48404016 ATTTTA-CTTTTAGGGGTATTTTGGTAATTTTACCCTTTGAGGTTATTTTACTA
1 ATTTTACCCTTTAGAGGTATTTCGATAATTTTACCCTTCGAGG-TATTTTAGTA
* *
48404069 ATTTTACCCTTTTGGGGTATTTCGATAATTT
1 ATTTTACCCTTTAGAGGTATTTCGATAATTT
48404100 ATGGCATATT
Statistics
Matches: 118, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
52 2 0.02
53 42 0.36
54 74 0.63
ACGTcount: A:0.22, C:0.15, G:0.17, T:0.47
Consensus pattern (53 bp):
ATTTTACCCTTTAGAGGTATTTCGATAATTTTACCCTTCGAGGTATTTTAGTA
Found at i:48404098 original size:80 final size:81
Alignment explanation
Indices: 48403908--48404099 Score: 194
Period size: 80 Copynumber: 2.4 Consensus size: 81
48403898 TATAACGGTC
* * * * *
48403908 ATTTTACCCTATAGAGGTATTTCGATCATTTTACCCTTCGATGGTATTTCAGTAATTTTACCCTT
1 ATTTTACCCTTTAGGGGTATTTCGATAATTTTACCCTTAGAGGGTATTTCAGTAATTTTACCCTT
48403973 CGAGGGTATTTCGATA
66 CGAGGGTATTTCGATA
* * ** **
48403989 ATTTTACCC-TTCGAGGGTATTT-TAGTAATTTTACTTTTAG-GGGTATTTTGGTAATTTTACCC
1 ATTTTACCCTTTAG-GGGTATTTCGA-TAATTTTACCCTTAGAGGGTATTTCAGTAATTTTACCC
* * *
48404051 TTTGAGGTTATTT-TACTA
64 TTCGAGGGTATTTCGA-TA
*
48404069 ATTTTACCCTTTTGGGGTATTTCGATAATTT
1 ATTTTACCCTTTAGGGGTATTTCGATAATTT
48404100 ATGGCATATT
Statistics
Matches: 90, Mismatches: 16, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
79 1 0.01
80 58 0.64
81 31 0.34
ACGTcount: A:0.22, C:0.15, G:0.17, T:0.47
Consensus pattern (81 bp):
ATTTTACCCTTTAGGGGTATTTCGATAATTTTACCCTTAGAGGGTATTTCAGTAATTTTACCCTT
CGAGGGTATTTCGATA
Found at i:48406823 original size:20 final size:20
Alignment explanation
Indices: 48406800--48406838 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
48406790 AAATGTAACA
*
48406800 ATTAAATTAAAAATAAAAAT
1 ATTAAAATAAAAATAAAAAT
48406820 ATTAAAATAAAAATAAAAA
1 ATTAAAATAAAAATAAAAA
48406839 ATGACTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (20 bp):
ATTAAAATAAAAATAAAAAT
Found at i:48407977 original size:29 final size:28
Alignment explanation
Indices: 48407941--48408018 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
48407931 TCATGAGATT
48407941 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
48407971 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
48407998 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
48408019 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:48408240 original size:174 final size:174
Alignment explanation
Indices: 48407971--48408298 Score: 611
Period size: 174 Copynumber: 1.9 Consensus size: 174
48407961 AAATTGTACA
48407971 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
48408036 TGTGCGAACCCAATATATATTTTATATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
48408101 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
48408145 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
48408210 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
48408275 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
48408299 ACCTTGAGTT
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:48421637 original size:44 final size:45
Alignment explanation
Indices: 48421527--48421724 Score: 188
Period size: 45 Copynumber: 4.5 Consensus size: 45
48421517 TTGGAAATAT
* * * ** **
48421527 AGGTGGATGCTATGTGCTGATTCCACCCGATATTAATGAAAATAA
1 AGGTGGTTGCTATGTGCTGATTTCACCAGATACCAATGAGTATAA
* *
48421572 AGGTGGTTGCTATGTGTTGATTTCATCAGATACCAAT-AGTA-ATA
1 AGGTGGTTGCTATGTGCTGATTTCACCAGATACCAATGAGTATA-A
* * * * *
48421616 TGGTGGTTGCTATCTGCTGATTTCACCCGGTACCATTGAGTATAA
1 AGGTGGTTGCTATGTGCTGATTTCACCAGATACCAATGAGTATAA
* * *
48421661 AGGTGGTTGCTATGTGCTGATTTCACCAG-TACTATTGACTATAA
1 AGGTGGTTGCTATGTGCTGATTTCACCAGATACCAATGAGTATAA
* *
48421705 GGGTGG-TGCTGTGTGCTGAT
1 AGGTGGTTGCTATGTGCTGAT
48421725 CCACCGTGTA
Statistics
Matches: 127, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
43 14 0.11
44 51 0.40
45 61 0.48
46 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (45 bp):
AGGTGGTTGCTATGTGCTGATTTCACCAGATACCAATGAGTATAA
Found at i:48421637 original size:89 final size:90
Alignment explanation
Indices: 48421522--48421685 Score: 231
Period size: 89 Copynumber: 1.8 Consensus size: 90
48421512 TATCGTTGGA
* **
48421522 AATATAGGTGGATGCTATGTGCTGATTCCACCCGATATTAATGAAAATAAAGGTGGTTGCTATGT
1 AATATAGGTGGATGCTATCTGCTGATTCCACCCGATACCAATGAAAATAAAGGTGGTTGCTATGT
*
48421587 GTTGATTTCATCAGATACCAATAGT
66 GCTGATTTCATCAGATACCAATAGT
* * * * **
48421612 AATAT-GGTGGTTGCTATCTGCTGATTTCACCCGGTACCATTGAGTATAAAGGTGGTTGCTATGT
1 AATATAGGTGGATGCTATCTGCTGATTCCACCCGATACCAATGAAAATAAAGGTGGTTGCTATGT
48421676 GCTGATTTCA
66 GCTGATTTCA
48421686 CCAGTACTAT
Statistics
Matches: 64, Mismatches: 10, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
89 59 0.92
90 5 0.08
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.35
Consensus pattern (90 bp):
AATATAGGTGGATGCTATCTGCTGATTCCACCCGATACCAATGAAAATAAAGGTGGTTGCTATGT
GCTGATTTCATCAGATACCAATAGT
Found at i:48426009 original size:20 final size:20
Alignment explanation
Indices: 48425986--48426024 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
48425976 AAATGTAACA
*
48425986 ATTAAATTAAAAATAAAAAT
1 ATTAAAATAAAAATAAAAAT
48426006 ATTAAAATAAAAATAAAAA
1 ATTAAAATAAAAATAAAAA
48426025 ATGGCTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (20 bp):
ATTAAAATAAAAATAAAAAT
Found at i:48428229 original size:13 final size:13
Alignment explanation
Indices: 48428211--48428237 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
48428201 ATATTCTAGT
48428211 AATTCATGATTCA
1 AATTCATGATTCA
48428224 AATTCATGATTCA
1 AATTCATGATTCA
48428237 A
1 A
48428238 TTTTTGTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (13 bp):
AATTCATGATTCA
Found at i:48432054 original size:13 final size:13
Alignment explanation
Indices: 48432036--48432061 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
48432026 TTAATATCAA
48432036 ATAATGTATTACT
1 ATAATGTATTACT
48432049 ATAATGTATTACT
1 ATAATGTATTACT
48432062 CGCTTACGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (13 bp):
ATAATGTATTACT
Found at i:48438902 original size:43 final size:42
Alignment explanation
Indices: 48438795--48439099 Score: 425
Period size: 43 Copynumber: 7.1 Consensus size: 42
48438785 AGGTTATGTT
* * * *
48438795 TTTAGCGGCGTTTTTGCTAGAAGCGCCGCTAAAGGT-TTGATC
1 TTTAGCGGCGTTTGTG-GAAAAGCGCCGCTAAAGGTCTTGGTC
*
48438837 TATAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGG-AAAAGCGCCGCTAAAGGTCTTGGTC
* *
48438880 TTTAGCGGCGTTTGTGGAAAAAGCGCCGTTAAAGGTCTTGGTT
1 TTTAGCGGCGTTTGTGG-AAAAGCGCCGCTAAAGGTCTTGGTC
48438923 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGT-GGAAAAGCGCCGCTAAAGGTCTTGGTC
* * *
48438966 TTTAGCGGCGTTTGTGGGAGAAGCGCTGCTAAAGGTCTTGTTC
1 TTTAGCGGCGTTTGT-GGAAAAGCGCCGCTAAAGGTCTTGGTC
*
48439009 TTTAGCGTCGTTTGTAGGAAAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGT-GGAAAAGCGCCGCTAAAGGTCTTGGTC
*
48439052 TTTAGCGGCGTTTGTGGGAAAGCGCCGCTAAAGGTC-TGGTTC
1 TTTAGCGGCGTTTGTGGAAAAGCGCCGCTAAAGGTCTTGG-TC
48439094 TTTAGC
1 TTTAGC
48439100 TGGCTTTTTT
Statistics
Matches: 238, Mismatches: 21, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
41 3 0.01
42 59 0.25
43 174 0.73
44 2 0.01
ACGTcount: A:0.19, C:0.18, G:0.32, T:0.31
Consensus pattern (42 bp):
TTTAGCGGCGTTTGTGGAAAAGCGCCGCTAAAGGTCTTGGTC
Found at i:48439986 original size:11 final size:11
Alignment explanation
Indices: 48439970--48439994 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
48439960 CACTTGGGAG
48439970 AAAATGAGTGA
1 AAAATGAGTGA
48439981 AAAATGAGTGA
1 AAAATGAGTGA
48439992 AAA
1 AAA
48439995 TCGAGTGTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.00, G:0.24, T:0.16
Consensus pattern (11 bp):
AAAATGAGTGA
Found at i:48452489 original size:16 final size:14
Alignment explanation
Indices: 48452466--48452509 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 14
48452456 TTTTCATCTT
48452466 TTACTTAATTAAAA
1 TTACTTAATTAAAA
48452480 TTTAACTTAATTATCAAA
1 -TT-ACTTAATTA--AAA
48452498 TTACTTAATTAA
1 TTACTTAATTAA
48452510 CCTTTAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
14 1 0.04
15 2 0.08
16 18 0.69
17 2 0.08
18 3 0.12
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (14 bp):
TTACTTAATTAAAA
Found at i:48452516 original size:32 final size:31
Alignment explanation
Indices: 48452466--48452537 Score: 83
Period size: 32 Copynumber: 2.3 Consensus size: 31
48452456 TTTTCATCTT
*
48452466 TTACTTAATTAAAATTTAACTTAATTATCA-AA
1 TTACTTAATTAAAATTTAA--AAATTATCATAA
**
48452498 TTACTTAATTAACCTTTAAAAATTATCATAA
1 TTACTTAATTAAAATTTAAAAATTATCATAA
48452529 TTACATTAA
1 TTAC-TTAA
48452538 AACCTATCCA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 8 0.23
31 6 0.17
32 21 0.60
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (31 bp):
TTACTTAATTAAAATTTAAAAATTATCATAA
Found at i:48463524 original size:180 final size:180
Alignment explanation
Indices: 48463222--48463566 Score: 521
Period size: 180 Copynumber: 1.9 Consensus size: 180
48463212 AAGCATGTAA
* * * *
48463222 TAGGGGACATTCCACTTTTGTTTCACCCTCAATGAATACCCATTGAATAGCTCTTTTATTTCCAT
1 TAGGGGAAATTCCACTTTTGTTTCACCCCCAATGAATACCCATTGAATAGCTCTATCATTTCCAT
* * *
48463287 TTTACCTTTTCGTTTTCTCACCTCAAGAAAGCTCTCACTCAGCCCGATCTCAGTCCCGACCTCCC
66 TTTACCTTCTCATTTTCTCACCTCAAGAAAGCTCTCACTCAGCCCAATCTCAGTCCCGACCTCCC
* * *
48463352 TTGCTTCCTTTGTCTCCAGCCAATAGCAATCCTCCTAATTAAACCTTTAT
131 TTACTTCCTTCGTCTACAGCCAATAGCAATCCTCCTAATTAAACCTTTAT
* *
48463402 TAGGGGAAATTCCTA-TTTTGTTTCACCCCCATTGAATACCCATTGAATAGCTCTATCGTTTCCA
1 TAGGGGAAATTCC-ACTTTTGTTTCACCCCCAATGAATACCCATTGAATAGCTCTATCATTTCCA
*
48463466 TTTTACCTTCTCATTTTCTCACCTCAAGAAAGCTCTCACTCAGCCCAATCTCAGTCCCGACCTCT
65 TTTTACCTTCTCATTTTCTCACCTCAAGAAAGCTCTCACTCAGCCCAATCTCAGTCCCGACCTCC
* * * *
48463531 TTTACTTCCTTCGTCTATAGCCAATAGTAGTCCTCC
130 CTTACTTCCTTCGTCTACAGCCAATAGCAATCCTCC
48463567 ATTAGGTACA
Statistics
Matches: 147, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
180 146 0.99
181 1 0.01
ACGTcount: A:0.22, C:0.32, G:0.11, T:0.35
Consensus pattern (180 bp):
TAGGGGAAATTCCACTTTTGTTTCACCCCCAATGAATACCCATTGAATAGCTCTATCATTTCCAT
TTTACCTTCTCATTTTCTCACCTCAAGAAAGCTCTCACTCAGCCCAATCTCAGTCCCGACCTCCC
TTACTTCCTTCGTCTACAGCCAATAGCAATCCTCCTAATTAAACCTTTAT
Found at i:48470444 original size:13 final size:13
Alignment explanation
Indices: 48470426--48470457 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
48470416 CGGATATAAT
48470426 ATATATACACACA
1 ATATATACACACA
48470439 ATATATACACACA
1 ATATATACACACA
48470452 AT-TATA
1 ATATATA
48470458 ATAACAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.53, C:0.19, G:0.00, T:0.28
Consensus pattern (13 bp):
ATATATACACACA
Found at i:48473630 original size:43 final size:43
Alignment explanation
Indices: 48473579--48473676 Score: 160
Period size: 43 Copynumber: 2.3 Consensus size: 43
48473569 AAAGGAGATT
*
48473579 TAATTAAAAATTTATGATAATATATCAATAATTTTAAAATAAA
1 TAATTAAAAATTGATGATAATATATCAATAATTTTAAAATAAA
* *
48473622 TAATTAAAAAATGATGATAATATATCAATAATTTTAAAATAAT
1 TAATTAAAAATTGATGATAATATATCAATAATTTTAAAATAAA
*
48473665 TAATTATAAATT
1 TAATTAAAAATT
48473677 AAAAGCATAG
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.40
Consensus pattern (43 bp):
TAATTAAAAATTGATGATAATATATCAATAATTTTAAAATAAA
Found at i:48477013 original size:15 final size:16
Alignment explanation
Indices: 48476990--48477022 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
48476980 AGTTTTTTCG
*
48476990 TCTTTTTCTT-ATTTT
1 TCTTCTTCTTGATTTT
48477005 TCTTCTTCTTGATTTT
1 TCTTCTTCTTGATTTT
48477021 TC
1 TC
48477023 CCTAATCCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.06, C:0.18, G:0.03, T:0.73
Consensus pattern (16 bp):
TCTTCTTCTTGATTTT
Found at i:48485965 original size:13 final size:13
Alignment explanation
Indices: 48485921--48485965 Score: 72
Period size: 13 Copynumber: 3.5 Consensus size: 13
48485911 TGACTTGGGT
*
48485921 CACATGGCCAAGC
1 CACACGGCCAAGC
*
48485934 CACACAGCCAAGC
1 CACACGGCCAAGC
48485947 CACACGGCCAAGC
1 CACACGGCCAAGC
48485960 CACACG
1 CACACG
48485966 CCTGTGTGCT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.33, C:0.44, G:0.20, T:0.02
Consensus pattern (13 bp):
CACACGGCCAAGC
Found at i:48489249 original size:20 final size:20
Alignment explanation
Indices: 48489226--48489282 Score: 114
Period size: 20 Copynumber: 2.9 Consensus size: 20
48489216 TATATTAAGA
48489226 ATGTTATTAAATTATATATT
1 ATGTTATTAAATTATATATT
48489246 ATGTTATTAAATTATATATT
1 ATGTTATTAAATTATATATT
48489266 ATGTTATTAAATTATAT
1 ATGTTATTAAATTATAT
48489283 TTAATAATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.54
Consensus pattern (20 bp):
ATGTTATTAAATTATATATT
Found at i:48490853 original size:26 final size:27
Alignment explanation
Indices: 48490824--48490879 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
48490814 TTAGCATCAC
* *
48490824 CAATGAATC-GGGGAATCAGCACTTAG
1 CAATCAATCGGGGGAATCAGCACATAG
**
48490850 CAATCCGTCGGGGGAATCAGCACATAG
1 CAATCAATCGGGGGAATCAGCACATAG
48490877 CAA
1 CAA
48490880 CCCCCTTTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 6 0.24
27 19 0.76
ACGTcount: A:0.34, C:0.23, G:0.27, T:0.16
Consensus pattern (27 bp):
CAATCAATCGGGGGAATCAGCACATAG
Found at i:48490876 original size:105 final size:104
Alignment explanation
Indices: 48490694--48491065 Score: 568
Period size: 105 Copynumber: 3.6 Consensus size: 104
48490684 TAACCGTTAT
** *
48490694 CGGTGGATCCCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 CGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
48490759 AATCAGCACATAGCAACCCCCTTTTTTCATTTCAAAGATA
66 AATCAGCACATAGCAACCCCC-TTTTTCATTTCAAAGATA
* * * *
48490799 CGGTGGATATCGCATTTAGCATCACCAATGAATCGGGGAATCAGCACTTAGCAATCCGTCGGGGG
1 CGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
48490864 AATCAGCACATAGCAACCCCC-TTTTCATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTTCATTTCAAAGATA
* *
48490902 CGGTGGATATCGCACTTAGCACAACCAATGAAATAGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 CGGTGGATATCGCACTTAGCACCACCAATG-AATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
**
48490967 GAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTTTTCATTTCAAAGATA
* * **
48491007 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 CGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
48491066 TTTATATACA
Statistics
Matches: 243, Mismatches: 21, Indels: 7
0.90 0.08 0.03
Matches are distributed among these distances:
103 44 0.18
104 79 0.33
105 119 0.49
106 1 0.00
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.20
Consensus pattern (104 bp):
CGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTTCATTTCAAAGATA
Found at i:48491428 original size:30 final size:29
Alignment explanation
Indices: 48491394--48491458 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
48491384 TAATCCACCA
48491394 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
48491424 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
48491454 CCCAA
1 CCCAA
48491459 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:48491432 original size:31 final size:30
Alignment explanation
Indices: 48491401--48491458 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
48491391 CCACCCAACT
48491401 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
48491431 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
48491459 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:48492301 original size:16 final size:16
Alignment explanation
Indices: 48492280--48492318 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
48492270 ACAATTATTG
*
48492280 ATTACAGCTCTATTCC
1 ATTACAGCCCTATTCC
*
48492296 ATTACAACCCTATTCC
1 ATTACAGCCCTATTCC
48492312 ATTACAG
1 ATTACAG
48492319 TGAACCAAGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.31, C:0.31, G:0.05, T:0.33
Consensus pattern (16 bp):
ATTACAGCCCTATTCC
Found at i:48495196 original size:25 final size:25
Alignment explanation
Indices: 48495118--48495199 Score: 66
Period size: 25 Copynumber: 3.4 Consensus size: 25
48495108 GCTCTTTGTG
* * *
48495118 AGCTTCCTGAT-TAATGGCTCTCCGG
1 AGCTTCCCGATAT-ATGGTTCTCCGA
*
48495143 AGCTTCCCG--ATATGGCTTGCT-TGA
1 AGCTTCCCGATATATGG-TT-CTCCGA
48495167 A-CTTCCCGATATATGGTTCTCCGA
1 AGCTTCCCGATATATGGTTCTCCGA
48495191 AGCTTCCCG
1 AGCTTCCCG
48495200 TTAATGGCTC
Statistics
Matches: 45, Mismatches: 5, Indels: 14
0.70 0.08 0.22
Matches are distributed among these distances:
23 13 0.29
24 9 0.20
25 23 0.51
ACGTcount: A:0.17, C:0.29, G:0.22, T:0.32
Consensus pattern (25 bp):
AGCTTCCCGATATATGGTTCTCCGA
Found at i:48495218 original size:24 final size:24
Alignment explanation
Indices: 48495065--48495233 Score: 92
Period size: 26 Copynumber: 6.8 Consensus size: 24
48495055 TAGCTCTTAT
* *
48495065 GAGCGTCCCGTTATATGGCTCTTCAT
1 GAGCTTCCCGTTA-ATGGCTCTTC-G
** * *
48495091 GAGCTTCTTGATTAAAGGCTCTTTG
1 GAGCTTCCCG-TTAATGGCTCTTCG
* *
48495116 TGAGCTTCCTGATTAATGGCTCTCCG
1 -GAGCTTCCCG-TTAATGGCTCTTCG
*
48495142 GAGCTTCCCGAT-ATGGCTTGCTT--
1 GAGCTTCCCGTTAATGGC-T-CTTCG
* * * *
48495165 GAACTTCCCGATATATGGTTCTCCG
1 GAGCTTCCCGTTA-ATGGCTCTTCG
*
48495190 AAGCTTCCCGTTAATGGCTCTTCG
1 GAGCTTCCCGTTAATGGCTCTTCG
* * *
48495214 GAGCTACTCGTTATTGGCTC
1 GAGCTTCCCGTTAATGGCTC
48495234 ATATAAGCTC
Statistics
Matches: 110, Mismatches: 25, Indels: 18
0.72 0.16 0.12
Matches are distributed among these distances:
23 18 0.16
24 28 0.25
25 25 0.23
26 36 0.33
27 3 0.03
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (24 bp):
GAGCTTCCCGTTAATGGCTCTTCG
Found at i:48495313 original size:25 final size:25
Alignment explanation
Indices: 48495285--48495332 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
48495275 TACAGCCCGG
*
48495285 ATAAGCTTCCCCTTACATGGCTCAC
1 ATAAGATTCCCCTTACATGGCTCAC
* *
48495310 ATAAGATTCCCGTTATATGGCTC
1 ATAAGATTCCCCTTACATGGCTC
48495333 GAGAGAGGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.31
Consensus pattern (25 bp):
ATAAGATTCCCCTTACATGGCTCAC
Found at i:48497805 original size:45 final size:46
Alignment explanation
Indices: 48497738--48497861 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
48497728 CATATGACCT
*
48497738 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCT-AGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
48497781 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
48497827 CTTATCACTTTATCACTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
48497862 CACTTATCAC
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 8 0.11
44 4 0.05
45 21 0.28
46 41 0.55
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (46 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
Found at i:48497844 original size:46 final size:45
Alignment explanation
Indices: 48497738--48497933 Score: 203
Period size: 37 Copynumber: 4.7 Consensus size: 45
48497728 CATATGACCT
*
48497738 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCTAGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
48497781 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTACCA
*
48497827 CTTATCACTTTATCACTTGATCAGATAA--GT-G-T-AG---CCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
48497864 CTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
48497901 CTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTA
48497934 ACCACTTATC
Statistics
Matches: 139, Mismatches: 7, Indels: 17
0.85 0.04 0.10
Matches are distributed among these distances:
37 64 0.46
39 2 0.01
40 2 0.01
42 1 0.01
43 9 0.06
44 6 0.04
45 21 0.15
46 34 0.24
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (45 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
Found at i:48497865 original size:37 final size:37
Alignment explanation
Indices: 48497823--48497962 Score: 235
Period size: 37 Copynumber: 3.8 Consensus size: 37
48497813 AGCTGAAGCT
* *
48497823 ACCACTTATCACTTTATCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
*
48497860 GCCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
*
48497897 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
*
48497934 ACCACTTATCACTTTGTTTCTTGATCAGA
1 ACCACTTATCACTTTGTCTCTTGATCAGA
48497963 AGTACTCAAA
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.27, C:0.21, G:0.13, T:0.39
Consensus pattern (37 bp):
ACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
Found at i:48500465 original size:74 final size:73
Alignment explanation
Indices: 48500344--48500488 Score: 256
Period size: 74 Copynumber: 2.0 Consensus size: 73
48500334 TCTCGGGTTT
*
48500344 AAAAAAGGGATCATGGCCAGTAAGTTAGGACACGATCTTTTCTTAATTCCCGAGATCGTTTAAAA
1 AAAAAAGGGATCATGGCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCGTTT-AAA
48500409 ACTTGAGGA
65 ACTTGAGGA
48500418 AAAAAAGGGATCAT-GCCTAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCGTTTAAA
1 AAAAAAGGGATCATGGCC-AGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCGTTTAAA
48500482 ACTTGAG
65 ACTTGAG
48500489 TTTGAAAAGA
Statistics
Matches: 69, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
73 13 0.19
74 56 0.81
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (73 bp):
AAAAAAGGGATCATGGCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCGTTTAAAA
CTTGAGGA
Found at i:48500930 original size:41 final size:41
Alignment explanation
Indices: 48500885--48501024 Score: 138
Period size: 41 Copynumber: 3.3 Consensus size: 41
48500875 TATATATATG
48500885 TATATAAAAATTATAAAATATAAAATATATATAAGTATGTA
1 TATATAAAAATTATAAAATATAAAATATATATAAGTATGTA
* * * *
48500926 TATATATACATTTATGAAAATGAAAAAAT-TATGCATATAGATATATA
1 TATATA-AAAATTAT-AAAAT-ATAAAATATAT--ATA-AG-TATGTA
* * *
48500973 TGTATATAAATTATAAAATATAAAACATATATAAGTATGTA
1 TATATAAAAATTATAAAATATAAAATATATATAAGTATGTA
*
48501014 TATATATAAAT
1 TATATAAAAAT
48501025 AAATTATAAC
Statistics
Matches: 79, Mismatches: 12, Indels: 16
0.74 0.11 0.15
Matches are distributed among these distances:
41 21 0.27
42 8 0.10
43 11 0.14
44 11 0.14
45 11 0.14
46 7 0.09
47 10 0.13
ACGTcount: A:0.54, C:0.02, G:0.06, T:0.37
Consensus pattern (41 bp):
TATATAAAAATTATAAAATATAAAATATATATAAGTATGTA
Found at i:48500954 original size:51 final size:48
Alignment explanation
Indices: 48500850--48500980 Score: 118
Period size: 51 Copynumber: 2.6 Consensus size: 48
48500840 ATAAAATTAT
* ** *
48500850 AAAAATATAAAAAGATATATTTGTATATATATATGTATATAAAAATTA
1 AAAAATATAAAAAGATATATATGTATATATATACATATATAAAAATGA
* * * *
48500898 TAAAATATAAAATATATATAAGTATGTATATATATACATTTATGAAAATGA
1 AAAAATATAAAA-AGATAT-A-TATGTATATATATACATATATAAAAATGA
* *
48500949 AAAAATTATGCATATAGATATATATGTATATA
1 AAAAA-TAT--AAAAAGATATATATGTATATA
48500981 AATTATAAAA
Statistics
Matches: 65, Mismatches: 12, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
48 11 0.17
49 5 0.08
50 1 0.02
51 37 0.57
52 4 0.06
53 5 0.08
54 2 0.03
ACGTcount: A:0.53, C:0.02, G:0.08, T:0.37
Consensus pattern (48 bp):
AAAAATATAAAAAGATATATATGTATATATATACATATATAAAAATGA
Found at i:48501018 original size:47 final size:44
Alignment explanation
Indices: 48500843--48501033 Score: 160
Period size: 45 Copynumber: 4.2 Consensus size: 44
48500833 AAAGAAAATA
** * *
48500843 AAATTATAAAAATATAAAAAGATATATTTGTATATATATATGTATATAA
1 AAATTAT-AAAATAT-AAAA-ATATATAAGTATGTATATA--TATATAT
*
48500892 AAATTATAAAATATAAAATATATATAAGTATGTATATATATACAT
1 AAATTATAAAATATAAAA-ATATATAAGTATGTATATATATATAT
* *
48500937 ---TTATGAAAATGA-AAAAAT-TATGCA-TATAGATATATATGTATAT
1 AAATTAT-AAAAT-ATAAAAATATAT-AAGTAT-G-TATATATATATAT
*
48500980 AAATTATAAAATATAAAACATATATAAGTATGTATATATATAAAT
1 AAATTATAAAATATAAAA-ATATATAAGTATGTATATATATATAT
48501025 AAATTATAA
1 AAATTATAA
48501034 CATTATGTAT
Statistics
Matches: 118, Mismatches: 12, Indels: 28
0.75 0.08 0.18
Matches are distributed among these distances:
41 6 0.05
42 8 0.07
43 20 0.17
44 2 0.02
45 34 0.29
46 8 0.07
47 26 0.22
48 7 0.06
49 7 0.06
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.37
Consensus pattern (44 bp):
AAATTATAAAATATAAAAATATATAAGTATGTATATATATATAT
Found at i:48501051 original size:33 final size:33
Alignment explanation
Indices: 48501007--48501087 Score: 80
Period size: 33 Copynumber: 2.5 Consensus size: 33
48500997 ACATATATAA
*
48501007 GTATGTA--TATATATAAATAAATTAT-AACAT
1 GTATGTATGTATATATAAATAAATTATAAAAAT
** *
48501037 -TATGTATTTGTATATATCTATATATTATAAAAAT
1 GTATGTA--TGTATATATAAATAAATTATAAAAAT
48501071 GTATGTATGTATATATA
1 GTATGTATGTATATATA
48501088 TGTATAACGA
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
29 6 0.15
33 24 0.60
34 4 0.10
35 6 0.15
ACGTcount: A:0.43, C:0.02, G:0.09, T:0.46
Consensus pattern (33 bp):
GTATGTATGTATATATAAATAAATTATAAAAAT
Found at i:48503119 original size:50 final size:50
Alignment explanation
Indices: 48503065--48503232 Score: 165
Period size: 50 Copynumber: 3.4 Consensus size: 50
48503055 ACTGCAATGT
*
48503065 CGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCACCTC
1 CGGGGAAGCAAGATTCGCCGTTGTGGCTTCAATCTATTCCACTGCACCTC
* ** * * ** ** *
48503115 CGGGGAAGGAAGATTCATCATTGTGGCTTCAATCTTTTTAACTGCAATTT
1 CGGGGAAGCAAGATTCGCCGTTGTGGCTTCAATCTATTCCACTGCACCTC
* * * * * *
48503165 TGGGGAAACAAGATTCGTCGTTATGGCTTCAATCTGTTCCACTGCACCGC
1 CGGGGAAGCAAGATTCGCCGTTGTGGCTTCAATCTATTCCACTGCACCTC
* *
48503215 CAGGGAAGTAAGATTCGC
1 CGGGGAAGCAAGATTCGC
48503233 TATTGTCGAA
Statistics
Matches: 89, Mismatches: 29, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
50 89 1.00
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (50 bp):
CGGGGAAGCAAGATTCGCCGTTGTGGCTTCAATCTATTCCACTGCACCTC
Found at i:48503238 original size:100 final size:100
Alignment explanation
Indices: 48503050--48503230 Score: 272
Period size: 100 Copynumber: 1.8 Consensus size: 100
48503040 GCTTAGATCA
* * *
48503050 TTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCACCTC
1 TTTTAACTGCAATGTCGGGGAAACAAGATTCGCCGTTATAGCTTCAATCTATTCCACTGCACCGC
*
48503115 CGGGGAAGGAAGATTCATCATTGTGGCTTCAATCT
66 CAGGGAAGGAAGATTCATCATTGTGGCTTCAATCT
* * * * *
48503150 TTTTAACTGCAATTTTGGGGAAACAAGATTCGTCGTTATGGCTTCAATCTGTTCCACTGCACCGC
1 TTTTAACTGCAATGTCGGGGAAACAAGATTCGCCGTTATAGCTTCAATCTATTCCACTGCACCGC
*
48503215 CAGGGAAGTAAGATTC
66 CAGGGAAGGAAGATTC
48503231 GCTATTGTCG
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
100 71 1.00
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (100 bp):
TTTTAACTGCAATGTCGGGGAAACAAGATTCGCCGTTATAGCTTCAATCTATTCCACTGCACCGC
CAGGGAAGGAAGATTCATCATTGTGGCTTCAATCT
Found at i:48515200 original size:74 final size:73
Alignment explanation
Indices: 48515093--48515237 Score: 227
Period size: 74 Copynumber: 2.0 Consensus size: 73
48515083 ATCTCAGTTT
* * * * *
48515093 AAAAAAGGGATCATGCCAAGTAAGTTAGGACACGATCTTTTCTTAATTCTCGAGATCGTTTAAAA
1 AAAAAAGGGATCATGCCAAGTAAGTTAGAACACGATCTCTTCTTAATTCCCGAGATCATAT-AAA
48515158 ACTTGAGGA
65 ACTTGAGGA
*
48515167 AAAAAAGGGATCATGCCCAGTAAGTTAGAACACGATCTCTTCTTAATTCCCGAGATCATATAAAA
1 AAAAAAGGGATCATGCCAAGTAAGTTAGAACACGATCTCTTCTTAATTCCCGAGATCATATAAAA
48515232 CTTGAG
66 CTTGAG
48515238 TGGAAAAGAT
Statistics
Matches: 65, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
73 10 0.15
74 55 0.85
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (73 bp):
AAAAAAGGGATCATGCCAAGTAAGTTAGAACACGATCTCTTCTTAATTCCCGAGATCATATAAAA
CTTGAGGA
Found at i:48515625 original size:10 final size:10
Alignment explanation
Indices: 48515612--48515646 Score: 70
Period size: 10 Copynumber: 3.5 Consensus size: 10
48515602 ATATAAAAAG
48515612 ATATATATGT
1 ATATATATGT
48515622 ATATATATGT
1 ATATATATGT
48515632 ATATATATGT
1 ATATATATGT
48515642 ATATA
1 ATATA
48515647 AAAATTATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (10 bp):
ATATATATGT
Found at i:48515625 original size:20 final size:21
Alignment explanation
Indices: 48515602--48515655 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
48515592 AATTATAAAA
48515602 ATATAAAAAG-ATATATATGT
1 ATATAAAAAGTATATATATGT
* *
48515622 ATAT-ATATGTATATATATGT
1 ATATAAAAAGTATATATATGT
*
48515642 ATATAAAAATTATA
1 ATATAAAAAGTATA
48515656 AAATATAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
19 3 0.11
20 18 0.67
21 6 0.22
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (21 bp):
ATATAAAAAGTATATATATGT
Found at i:48515733 original size:14 final size:14
Alignment explanation
Indices: 48515716--48515745 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
48515706 AAAAATATGC
*
48515716 ATATAGATATATAT
1 ATATAGATATAGAT
48515730 ATATAGATATAGAT
1 ATATAGATATAGAT
48515744 AT
1 AT
48515746 GTATATAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (14 bp):
ATATAGATATAGAT
Found at i:48515919 original size:3 final size:3
Alignment explanation
Indices: 48515913--48515939 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
48515903 AGTAATAATA
48515913 ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG
48515940 TAATATGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:48518049 original size:50 final size:50
Alignment explanation
Indices: 48517942--48518184 Score: 288
Period size: 50 Copynumber: 4.7 Consensus size: 50
48517932 GGGAATGAGA
* *
48517942 TCCCATGTAAGACCATGTCTGGGACATGGCATTAGCATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATGAGAGG
* *
48517998 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGGTGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
** *
48518048 TCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATGAGGGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
** * * * **
48518098 TCCCCCGTAAGACCATGTCTGGGTCATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* *
48518148 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
48518185 GTATAGAAAA
Statistics
Matches: 164, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
50 125 0.76
53 3 0.02
55 1 0.01
56 35 0.21
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:48518449 original size:4 final size:4
Alignment explanation
Indices: 48518433--48518471 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
48518423 ATGAGTTATT
* * *
48518433 TAAG TAAG CAAG TAAG TAAA TAAG TAAG TGAG TAAG TAA
1 TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAA
48518472 AGAAGCGAGT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.51, C:0.03, G:0.23, T:0.23
Consensus pattern (4 bp):
TAAG
Found at i:48518839 original size:60 final size:60
Alignment explanation
Indices: 48518766--48518890 Score: 241
Period size: 60 Copynumber: 2.1 Consensus size: 60
48518756 GTTAGCTATT
48518766 GAAATGGCTAATTAAGAACATGTTTGGTGTTATGAATGCCTAAATGATAGTAAATACAAA
1 GAAATGGCTAATTAAGAACATGTTTGGTGTTATGAATGCCTAAATGATAGTAAATACAAA
*
48518826 GAAATGGCTAATTAAGAACATGTTTGGTGTTATGGATGCCTAAATGATAGTAAATACAAA
1 GAAATGGCTAATTAAGAACATGTTTGGTGTTATGAATGCCTAAATGATAGTAAATACAAA
48518886 GAAAT
1 GAAAT
48518891 TATAAAAGAG
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 64 1.00
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.30
Consensus pattern (60 bp):
GAAATGGCTAATTAAGAACATGTTTGGTGTTATGAATGCCTAAATGATAGTAAATACAAA
Found at i:48519578 original size:43 final size:43
Alignment explanation
Indices: 48519531--48519750 Score: 185
Period size: 43 Copynumber: 5.1 Consensus size: 43
48519521 TCAAATGCTG
* **
48519531 CTAAAGATCCTTATCTTTAGCGGCGC-TTCTCCCAAAAACATCA
1 CTAAAGACCCTTATCTTTAGCGGCGCTTTC-CCCAAAAACGCCA
* **** * **
48519574 CTAAAGATCAGGGTTTTTAGCGGCGCTTTCCCCTCAAACGCCA
1 CTAAAGACCCTTATCTTTAGCGGCGCTTTCCCCAAAAACGCCA
* **
48519617 C-AATAGACCCTGATCTTTAGCGGCGCTTTGACCAAAAACGCCA
1 CTAA-AGACCCTTATCTTTAGCGGCGCTTTCCCCAAAAACGCCA
** * * ** * *
48519660 CTAAAGACTATGATCTTTAGTGGCGCTTTTTCCACAAACGCCG
1 CTAAAGACCCTTATCTTTAGCGGCGCTTTCCCCAAAAACGCCA
**
48519703 CTAAAG-CCCTTATCTTTAGCGGCGCTTTGACCAAAAACGCCA
1 CTAAAGACCCTTATCTTTAGCGGCGCTTTCCCCAAAAACGCCA
48519745 CTAAAG
1 CTAAAG
48519751 GCCAACACCT
Statistics
Matches: 141, Mismatches: 33, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
42 36 0.26
43 100 0.71
44 5 0.04
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.25
Consensus pattern (43 bp):
CTAAAGACCCTTATCTTTAGCGGCGCTTTCCCCAAAAACGCCA
Found at i:48519578 original size:86 final size:84
Alignment explanation
Indices: 48519488--48519750 Score: 280
Period size: 86 Copynumber: 3.1 Consensus size: 84
48519478 AGAAGCGCCG
* * * *
48519488 CTAAAGACAAGGGTCTTTAGCGGTGCTTCTCTCTCAAATGCTGCTAAAGATCCTTATCTTTAGCG
1 CTAAAGAC-AGGGTCTTTAGCGGCGCTT-TCTCTCAAACGCCGCTAAAGACCCTTATCTTTAGCG
* *
48519553 GCGCTTCT-CCCAAAAACATCA
64 GCGCTT-TGACCAAAAACACCA
* * * *
48519574 CTAAAGATCAGGGTTTTTAGCGGCGCTTTCCCCTCAAACGCCAC-AATAGACCCTGATCTTTAGC
1 CTAAAGA-CAGGGTCTTTAGCGGCGCTTT-CTCTCAAACGCCGCTAA-AGACCCTTATCTTTAGC
*
48519638 GGCGCTTTGACCAAAAACGCCA
63 GGCGCTTTGACCAAAAACACCA
* * * * *
48519660 CTAAAGACTATGATCTTTAGTGGCGCTTTTTCCACAAACGCCGCTAAAG-CCCTTATCTTTAGCG
1 CTAAAGAC-AGGGTCTTTAGCGGCGCTTTCT-CTCAAACGCCGCTAAAGACCCTTATCTTTAGCG
*
48519724 GCGCTTTGACCAAAAACGCCA
64 GCGCTTTGACCAAAAACACCA
48519745 CTAAAG
1 CTAAAG
48519751 GCCAACACCT
Statistics
Matches: 150, Mismatches: 20, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
85 46 0.31
86 101 0.67
87 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.26
Consensus pattern (84 bp):
CTAAAGACAGGGTCTTTAGCGGCGCTTTCTCTCAAACGCCGCTAAAGACCCTTATCTTTAGCGGC
GCTTTGACCAAAAACACCA
Found at i:48519743 original size:85 final size:86
Alignment explanation
Indices: 48519440--48519750 Score: 276
Period size: 86 Copynumber: 3.6 Consensus size: 86
48519430 TTAGTGGAAG
* * * ** * * * *
48519440 CGCCGCTAAAGACCCTGATCTTTAGTGGCGTTTTTG-GGAGAAGCGCCGCTAAAGA-CAAGGGTC
1 CGCCGCTAAAGACCCTTATCTTTAGCGGCG-CTTTGACCAAAAACGCCACTAAAGATC-AGGATC
* * *
48519503 TTTAGCGGTGC-TTCTCTCTCAAA
64 TTTAGCGGCGCTTTC-CCCACAAA
* * * * ** * *
48519526 TGCTGCTAAAGATCCTTATCTTTAGCGGCGCTTCT-CCCAAAAACATCACTAAAGATCAGGGTTT
1 CGCCGCTAAAGACCCTTATCTTTAGCGGCGCTT-TGACCAAAAACGCCACTAAAGATCAGGATCT
*
48519590 TTAGCGGCGCTTTCCCCTCAAA
65 TTAGCGGCGCTTTCCCCACAAA
* * *
48519612 CGCCAC-AATAGACCCTGATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGA-CTATGATC
1 CGCCGCTAA-AGACCCTTATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGATC-AGGATC
* **
48519675 TTTAGTGGCGCTTTTTCCACAAA
64 TTTAGCGGCGCTTTCCCCACAAA
48519698 CGCCGCTAAAG-CCCTTATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAG
1 CGCCGCTAAAGACCCTTATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAG
48519751 GCCAACACCT
Statistics
Matches: 184, Mismatches: 33, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
85 47 0.26
86 131 0.71
87 6 0.03
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (86 bp):
CGCCGCTAAAGACCCTTATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGATCAGGATCTT
TAGCGGCGCTTTCCCCACAAA
Found at i:48519763 original size:85 final size:86
Alignment explanation
Indices: 48519589--48519768 Score: 238
Period size: 85 Copynumber: 2.1 Consensus size: 86
48519579 GATCAGGGTT
* *
48519589 TTTAGCGGCGCTTTCCCCTCAAACGCCACAATAGACCCTGATCTTTAGCGGCGCTTTGACCAAAA
1 TTTAGTGGCGCTTTCCCCACAAACGCCACAATAGACCCTGATCTTTAGCGGCGCTTTGACCAAAA
* ** *
48519654 ACGCCACTAAAGACTATGATC
66 ACGCCACTAAAGACCAACACC
** * *
48519675 TTTAGTGGCGCTTTTTCCACAAACGCCGCTAA-AG-CCCTTATCTTTAGCGGCGCTTTGACCAAA
1 TTTAGTGGCGCTTTCCCCACAAACGCCAC-AATAGACCCTGATCTTTAGCGGCGCTTTGACCAAA
*
48519738 AACGCCACTAAAGGCCAACACC
65 AACGCCACTAAAGACCAACACC
48519760 TTTAGTGGC
1 TTTAGTGGC
48519769 ATTTTTTTAA
Statistics
Matches: 82, Mismatches: 11, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
85 54 0.66
86 26 0.32
87 2 0.02
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (86 bp):
TTTAGTGGCGCTTTCCCCACAAACGCCACAATAGACCCTGATCTTTAGCGGCGCTTTGACCAAAA
ACGCCACTAAAGACCAACACC
Done.