Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 171 of 221
Found at i:51240528 original size:19 final size:19
Alignment explanation
Indices: 51240504--51240669 Score: 278
Period size: 19 Copynumber: 8.7 Consensus size: 19
51240494 TCATATCTTT
51240504 TAAGATTGCATATCATATC
1 TAAGATTGCATATCATATC
*
51240523 TAAGATTACATATCATATC
1 TAAGATTGCATATCATATC
51240542 TAAGATTGCATATCATATC
1 TAAGATTGCATATCATATC
*
51240561 TAAGATTACATATCATATC
1 TAAGATTGCATATCATATC
*
51240580 TAAGTTTGCATATCATATC
1 TAAGATTGCATATCATATC
*
51240599 TAAGATTACATATCATATC
1 TAAGATTGCATATCATATC
*
51240618 TAAGTTTGCATATCATATC
1 TAAGATTGCATATCATATC
*
51240637 TAAGATTACATATCATATC
1 TAAGATTGCATATCATATC
51240656 TAAGATTGCATATC
1 TAAGATTGCATATC
51240670 CTTGAAGATT
Statistics
Matches: 135, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 135 1.00
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.38
Consensus pattern (19 bp):
TAAGATTGCATATCATATC
Found at i:51240553 original size:38 final size:38
Alignment explanation
Indices: 51240479--51240669 Score: 319
Period size: 38 Copynumber: 4.9 Consensus size: 38
51240469 AAATTAAATC
*
51240479 TCTAAGATTACAAAATCATATCTTTTAAGATTGCATATCATA
1 TCTAAGATTAC-ATATCATATC---TAAGATTGCATATCATA
51240521 TCTAAGATTACATATCATATCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATATCTAAGATTGCATATCATA
*
51240559 TCTAAGATTACATATCATATCTAAGTTTGCATATCATA
1 TCTAAGATTACATATCATATCTAAGATTGCATATCATA
*
51240597 TCTAAGATTACATATCATATCTAAGTTTGCATATCATA
1 TCTAAGATTACATATCATATCTAAGATTGCATATCATA
51240635 TCTAAGATTACATATCATATCTAAGATTGCATATC
1 TCTAAGATTACATATCATATCTAAGATTGCATATC
51240670 CTTGAAGATT
Statistics
Matches: 146, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
38 126 0.86
41 9 0.06
42 11 0.08
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.38
Consensus pattern (38 bp):
TCTAAGATTACATATCATATCTAAGATTGCATATCATA
Found at i:51241763 original size:44 final size:44
Alignment explanation
Indices: 51241705--51241805 Score: 125
Period size: 44 Copynumber: 2.3 Consensus size: 44
51241695 ATCTGCTATT
* * *
51241705 TTCAACCTACTCCACTGCTG-CTCAGG-GATATATGATTCACAATC
1 TTCAACCTATTCCACTGCTGCCTAAGGAGATAGA--ATTCACAATC
* *
51241749 TTCAATCTATTCCACTGCTGCCTAAGGAGATAGAATTCTCAATC
1 TTCAACCTATTCCACTGCTGCCTAAGGAGATAGAATTCACAATC
51241793 TTCAACCTATTCC
1 TTCAACCTATTCC
51241806 TGTAACAGCC
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
44 39 0.80
45 5 0.10
46 5 0.10
ACGTcount: A:0.28, C:0.29, G:0.12, T:0.32
Consensus pattern (44 bp):
TTCAACCTATTCCACTGCTGCCTAAGGAGATAGAATTCACAATC
Found at i:51243771 original size:41 final size:41
Alignment explanation
Indices: 51243714--51243819 Score: 176
Period size: 41 Copynumber: 2.6 Consensus size: 41
51243704 AATGAGATAA
* * *
51243714 TTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAATTGT
1 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
51243755 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
1 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
*
51243796 TTCGGACTTTACGTCTAGCAGGCT
1 TTCAGACTTTACGTCTAGCAGGCT
51243820 AATTGCCAGT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 61 1.00
ACGTcount: A:0.21, C:0.22, G:0.25, T:0.32
Consensus pattern (41 bp):
TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
Found at i:51251668 original size:41 final size:41
Alignment explanation
Indices: 51251602--51251703 Score: 141
Period size: 41 Copynumber: 2.5 Consensus size: 41
51251592 AATGAGATAA
* * * * *
51251602 TTCAAACTTTACGTCTAGCAGGCTTGATGCCGGTGAATTGT
1 TTCAGACTTTACGTCTAGCAAGCTTGACGCCGGTGAAATAT
*
51251643 TTCAGACTTTACATCTAGCAAGCTTGACGCCGGTGAAATAT
1 TTCAGACTTTACGTCTAGCAAGCTTGACGCCGGTGAAATAT
*
51251684 TTCGGACTTTACGTCTAGCA
1 TTCAGACTTTACGTCTAGCA
51251704 GGCTAATTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.32
Consensus pattern (41 bp):
TTCAGACTTTACGTCTAGCAAGCTTGACGCCGGTGAAATAT
Found at i:51252981 original size:44 final size:44
Alignment explanation
Indices: 51252928--51253071 Score: 130
Period size: 44 Copynumber: 3.3 Consensus size: 44
51252918 CGCTGCAACC
*
51252928 CAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGATGTCGGTG
1 CAGGAAGGCAAGGCTGGTGTCTTCGATCTGCTTCGATGTCGGTG
* * * * ** * * ****
51252972 CAGGAAGGCAAGATCTGCTATTTTTAACCTGC-TCCACTG-CAACC
1 CAGGAAGGCAAG-GCTGGTGTCTTCGATCTGCTTCGA-TGTCGGTG
*
51253016 CAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGATGTCGGTG
1 CAGGAAGGCAAGGCTGGTGTCTTCGATCTGCTTCGATGTCGGTG
51253060 CAGGAAGGCAAG
1 CAGGAAGGCAAG
51253072 ATCTGCTATT
Statistics
Matches: 69, Mismatches: 27, Indels: 8
0.66 0.26 0.08
Matches are distributed among these distances:
43 14 0.20
44 41 0.59
45 14 0.20
ACGTcount: A:0.20, C:0.23, G:0.33, T:0.24
Consensus pattern (44 bp):
CAGGAAGGCAAGGCTGGTGTCTTCGATCTGCTTCGATGTCGGTG
Found at i:51252988 original size:88 final size:88
Alignment explanation
Indices: 51252880--51253252 Score: 638
Period size: 88 Copynumber: 4.2 Consensus size: 88
51252870 TTTCCCTGTA
*
51252880 GGTGCAGGAAGGCAAGATCTGCTGTTTTTAGCCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGG
1 GGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGG
51252945 TGTCTTCGATCTGCTTCGATGTC
66 TGTCTTCGATCTGCTTCGATGTC
* *
51252968 GGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCACTGCAACCCAGGGAGGCAAGGCTGG
1 GGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGG
51253033 TGTCTTCGATCTGCTTCGATGTC
66 TGTCTTCGATCTGCTTCGATGTC
* ** *
51253056 GGTGCAGGAAGGCAAGATCTGCTATTTTTAGCTTGCTCCGCTGCAACCCTTGGAGGCAAGGCTAG
1 GGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGG
*
51253121 TGTCTTCGATCTGCTTCGCTGTC
66 TGTCTTCGATCTGCTTCGATGTC
* * *
51253144 GGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTACTCCGTTGGAACCCAGGGAGGCAAGGCTGG
1 GGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGG
*
51253209 TGTCTTCGATCTGCTTCGCTGTC
66 TGTCTTCGATCTGCTTCGATGTC
51253232 GGTGCAGGAAGGCAAGATCTG
1 GGTGCAGGAAGGCAAGATCTG
51253253 ATATCTTCGA
Statistics
Matches: 268, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 268 1.00
ACGTcount: A:0.19, C:0.24, G:0.31, T:0.27
Consensus pattern (88 bp):
GGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGG
TGTCTTCGATCTGCTTCGATGTC
Found at i:51253113 original size:176 final size:176
Alignment explanation
Indices: 51252818--51253252 Score: 656
Period size: 176 Copynumber: 2.5 Consensus size: 176
51252808 ATTCACAATC
* ** * * * * * * *
51252818 TTTAACCTATTCCACTGCTAA-CCAGGGAGATAGGGCTGGGGTCATCGATTTGTTTCCCTGTAGG
1 TTTAACCTACTCCACTGC-AACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGG
* *
51252882 TGCAGGAAGGCAAGATCTGCTGTTTTTAGCCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTG
65 TGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTG
51252947 TCTTCGATCTGCTTCGATGTCGGTGCAGGAAGGCAAGATCTGCTATT
130 TCTTCGATCTGCTTCGATGTCGGTGCAGGAAGGCAAGATCTGCTATT
* *
51252994 TTTAACCTGCTCCACTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGATGTCGGT
1 TTTAACCTACTCCACTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGT
* **
51253059 GCAGGAAGGCAAGATCTGCTATTTTTAGCTTGCTCCGCTGCAACCCTTGGAGGCAAGGCTAGTGT
66 GCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGT
*
51253124 CTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATT
131 CTTCGATCTGCTTCGATGTCGGTGCAGGAAGGCAAGATCTGCTATT
* ** *
51253170 TTTAGCCTACTCCGTTGGAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGT
1 TTTAACCTACTCCACTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGT
51253235 GCAGGAAGGCAAGATCTG
66 GCAGGAAGGCAAGATCTG
51253253 ATATCTTCGA
Statistics
Matches: 234, Mismatches: 24, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
175 2 0.01
176 232 0.99
ACGTcount: A:0.19, C:0.24, G:0.30, T:0.27
Consensus pattern (176 bp):
TTTAACCTACTCCACTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGT
GCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGT
CTTCGATCTGCTTCGATGTCGGTGCAGGAAGGCAAGATCTGCTATT
Found at i:51253157 original size:44 final size:44
Alignment explanation
Indices: 51252928--51253159 Score: 109
Period size: 44 Copynumber: 5.3 Consensus size: 44
51252918 CGCTGCAACC
* * *
51252928 CAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGATGTCGGTG
1 CAGGAAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTG
* * * ** * * * ****
51252972 CAGGAAGGCAAGATCT-GCTATTTTTAACCTGCTCCACTG-CAACC
1 CAGGAAGGCAAG-GCTAG-TGTCTTCGATCTGCTTCGCTGTCGGTG
* * *
51253016 CAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGATGTCGGTG
1 CAGGAAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTG
* * * * ****
51253060 CAGGAAGGCAAGATCTGCTA-T-TTTTAGCT-TGCTCCGCTG-CAACC
1 CAGGAAGGCAAG----GCTAGTGTCTTCGATCTGCTTCGCTGTCGGTG
*
51253104 CTTGG-AGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTG
1 C-AGGAAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTG
51253148 CAGGAAGGCAAG
1 CAGGAAGGCAAG
51253160 ATCTGCTATT
Statistics
Matches: 125, Mismatches: 49, Indels: 28
0.62 0.24 0.14
Matches are distributed among these distances:
40 4 0.03
41 1 0.01
42 5 0.04
43 26 0.21
44 55 0.44
45 25 0.20
46 5 0.04
47 1 0.01
48 3 0.02
ACGTcount: A:0.19, C:0.24, G:0.31, T:0.26
Consensus pattern (44 bp):
CAGGAAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTG
Found at i:51253304 original size:44 final size:44
Alignment explanation
Indices: 51253236--51253791 Score: 408
Period size: 44 Copynumber: 12.5 Consensus size: 44
51253226 GCTGTCGGTG
* * * *
51253236 CAGGAAGGCAAGATCTGATATCTTCGATCTATTTAACGCCAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATA
* * * * *
51253280 CATGAAGACAAGATCTGCTTTCTTCGGTCTACTTTGC-CACCAGTA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTAC-TT-CACGCCAATA
** * * * *
51253325 TGGGATGACAAGATCTGC-ATCTTCGATCCACTTCGCTACCAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-GCCAATA
* * * * *
51253369 TAGGAAGACAGGTTCTGCCATCTTCAATCTACTTCACGCCAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATA
* * * * *
51253413 CATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACGCCAATA
** * * * * *
51253458 TGGGAAGAGAAGATCTGC-ATCTTCAATCCACTTCGCTACCAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-GCCAATA
* *
51253502 TAGGTAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATA
* * * * * *
51253546 CATGAAGACAATATCTGCTTTCTTCGATCTACTTCGCCACCAGT-
1 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACGCCAATA
* * * * ** *
51253590 CTGGGGAGAGAAGATCTGC-ATCTTCGATCCACTTTGCTACCAATA
1 C-AGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-GCCAATA
* *
51253635 TAGGAAGACAAGATCTGCTA-CATTCGATCTACTTCATGCCAATA
1 CAGGAAGACAAGATCTGCTATC-TTCGATCTACTTCACGCCAATA
* * * *
51253679 CATGAAGACAAGATCTGCTTTCTTCGATCTACTTTGC-CACCAGTA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTAC-TT-CACGCCAATA
** * * *
51253724 TGGGAAGACAAGATCTGC-ATCTTCGATCCACTTCGCTACCAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-GCCAATA
* *
51253768 TAGGAAGACAGGATCTGCTATCTT
1 CAGGAAGACAAGATCTGCTATCTT
51253792 TACTGATCTG
Statistics
Matches: 400, Mismatches: 92, Indels: 39
0.75 0.17 0.07
Matches are distributed among these distances:
42 2 0.00
43 8 0.02
44 260 0.65
45 129 0.32
46 1 0.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (44 bp):
CAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATA
Found at i:51253359 original size:133 final size:133
Alignment explanation
Indices: 51253237--51253791 Score: 896
Period size: 133 Copynumber: 4.2 Consensus size: 133
51253227 CTGTCGGTGC
* * * *
51253237 AGGAAGGCAAGATCTGATATCTTCGATCTATTTAACGCCAATACATGAAGACAAGATCTGCTTTC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
* * *
51253302 TTCGGTCTACTTTGCCACCAGTATGGGATGACAAGATCTGCATCTTCGATCCACTTCGCTACCAA
66 TTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAA
51253367 TAT
131 TAT
* * * *
51253370 AGGAAGACAGGTTCTGCCATCTTCAATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
* *
51253435 TTCGATCTACTTCGCCACCAGTATGGGAAGAGAAGATCTGCATCTTCAATCCACTTCGCTACCAA
66 TTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAA
51253500 TAT
131 TAT
* *
51253503 AGGTAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAATATCTGCTTTC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
* * * *
51253568 TTCGATCTACTTCGCCACCAGTCTGGGGAGAGAAGATCTGCATCTTCGATCCACTTTGCTACCAA
66 TTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAA
51253633 TAT
131 TAT
*
51253636 AGGAAGACAAGATCTGCTA-CATTCGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTTT
1 AGGAAGACAAGATCTGCTATC-TTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTT
*
51253700 CTTCGATCTACTTTGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCA
65 CTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCA
51253765 ATAT
130 ATAT
*
51253769 AGGAAGACAGGATCTGCTATCTT
1 AGGAAGACAAGATCTGCTATCTT
51253792 TACTGATCTG
Statistics
Matches: 388, Mismatches: 32, Indels: 4
0.92 0.08 0.01
Matches are distributed among these distances:
132 1 0.00
133 386 0.99
134 1 0.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.28
Consensus pattern (133 bp):
AGGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC
TTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAA
TAT
Found at i:51253376 original size:89 final size:89
Alignment explanation
Indices: 51253237--51253791 Score: 503
Period size: 89 Copynumber: 6.3 Consensus size: 89
51253227 CTGTCGGTGC
* * *** * * * *
51253237 AGGAAGGCAAGATCTGATATCTTCGATCTA-TTTAACGCCAATACATGAAGACAAGATCTGCTTT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAGATCTGC-AT
* * *
51253301 CTTCGGTCTACTTTGCCACCAGTAT
65 CTTCGATCTACTTCGCCACCAATAT
* * * * * *
51253326 GGGATGACAAGATCTGC-ATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGTTCTGCCAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAGATCTG-CAT
* * * *
51253390 CTTCAATCTACTTC-ACGCCAATAC
65 CTTCGATCTACTTCGCCACCAATAT
* * * * *
51253414 ATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGAGAAGATCTGCATC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAGATCTGCATC
* * *
51253479 TTCAATCCACTTCGCTACCAATAT
66 TTCGATCTACTTCGCCACCAATAT
* * * * * * *
51253503 AGGTAGACAAGATCTGCTATCTTCGATCTACTTC-ACGCCAATACATGAAGACAATATCTGCTTT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAGATCTGC-AT
* *
51253567 CTTCGATCTACTTCGCCACCAGTCT
65 CTTCGATCTACTTCGCCACCAATAT
* * * * * *
51253592 GGGGAGAGAAGATCTGC-ATCTTCGATCCACTTTGCTACCAATATAGGAAGACAAGATCTGC-TA
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAGATCTGCAT-
*** *
51253655 CATTCGATCTACTTC-ATGCCAATAC
65 C-TTCGATCTACTTCGCCACCAATAT
* * * * *
51253680 ATGAAGACAAGATCTGCTTTCTTCGATCTACTTTGCCACCAGTATGGGAAGACAAGATCTGCATC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAGATCTGCATC
* *
51253745 TTCGATCCACTTCGCTACCAATAT
66 TTCGATCTACTTCGCCACCAATAT
*
51253769 AGGAAGACAGGATCTGCTATCTT
1 AGGAAGACAAGATCTGCTATCTT
51253792 TACTGATCTG
Statistics
Matches: 367, Mismatches: 88, Indels: 22
0.77 0.18 0.05
Matches are distributed among these distances:
87 1 0.00
88 110 0.30
89 254 0.69
90 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.28
Consensus pattern (89 bp):
AGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAGATCTGCATC
TTCGATCTACTTCGCCACCAATAT
Found at i:51260094 original size:58 final size:58
Alignment explanation
Indices: 51260002--51260118 Score: 207
Period size: 58 Copynumber: 2.0 Consensus size: 58
51259992 CACCTTTAAA
*
51260002 AAAACTGGCAATCGTTCTCCCTTTTTATTGATTTTTCTCCTCTTCCTCTTTTTTTTTT
1 AAAACTGCCAATCGTTCTCCCTTTTTATTGATTTTTCTCCTCTTCCTCTTTTTTTTTT
* *
51260060 AAAACTGCCAATCGTTCTCCTTTTTTATTTATTTTTCTCCTCTTCCTCTTTTTTTTTT
1 AAAACTGCCAATCGTTCTCCCTTTTTATTGATTTTTCTCCTCTTCCTCTTTTTTTTTT
51260118 A
1 A
51260119 CAATGAAGGG
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.15, C:0.24, G:0.05, T:0.56
Consensus pattern (58 bp):
AAAACTGCCAATCGTTCTCCCTTTTTATTGATTTTTCTCCTCTTCCTCTTTTTTTTTT
Found at i:51260270 original size:19 final size:19
Alignment explanation
Indices: 51260246--51260337 Score: 166
Period size: 19 Copynumber: 4.8 Consensus size: 19
51260236 AATCATATCT
51260246 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
51260265 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
51260284 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
51260303 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
51260322 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
51260338 CTTGAAGATT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 69 1.00
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:51260295 original size:38 final size:38
Alignment explanation
Indices: 51260223--51260337 Score: 185
Period size: 38 Copynumber: 2.9 Consensus size: 38
51260213 AAATTAAATC
*
51260223 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTAC-ATATCATA---TCTAAGATTGCATATCATA
51260265 TCTAAGATTACATATCATATCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATATCTAAGATTGCATATCATA
51260303 TCTAAGATTACATATCATATCTAAGATTGCATATC
1 TCTAAGATTACATATCATATCTAAGATTGCATATC
51260338 CTTGAAGATT
Statistics
Matches: 72, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
38 54 0.75
41 7 0.10
42 11 0.15
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.37
Consensus pattern (38 bp):
TCTAAGATTACATATCATATCTAAGATTGCATATCATA
Found at i:51261619 original size:13 final size:13
Alignment explanation
Indices: 51261601--51261627 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
51261591 CACATTCGGC
51261601 TACCATATATATA
1 TACCATATATATA
51261614 TACCATATATATA
1 TACCATATATATA
51261627 T
1 T
51261628 TCGCATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (13 bp):
TACCATATATATA
Found at i:51266907 original size:17 final size:15
Alignment explanation
Indices: 51266887--51266921 Score: 52
Period size: 17 Copynumber: 2.2 Consensus size: 15
51266877 GAATTGAATA
51266887 ATTGTATGATTATAGTT
1 ATTGTATG-TTATA-TT
51266904 ATTGTATGTTATATT
1 ATTGTATGTTATATT
51266919 ATT
1 ATT
51266922 TTACTTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.28
16 5 0.28
17 8 0.44
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (15 bp):
ATTGTATGTTATATT
Found at i:51281929 original size:11 final size:11
Alignment explanation
Indices: 51281906--51282017 Score: 73
Period size: 12 Copynumber: 9.0 Consensus size: 11
51281896 GTTTTTTTTT
51281906 AAGTTTTGCATC
1 AAGTTTT-CATC
51281918 AAGTTCTT-ATC
1 AAGTT-TTCATC
51281929 AAGCTTTTCATC
1 AAG-TTTTCATC
51281941 AAGTCTTTTCATC
1 AAG--TTTTCATC
51281954 AAGTGTTTTTCATC
1 AA--G-TTTTCATC
51281968 AAGTCTTTTCATC
1 AAG--TTTTCATC
51281981 AAGTGTTTTTCATC
1 AA--G-TTTTCATC
* *
51281995 AAGTCATTAATC
1 AAGT-TTTCATC
51282007 AAGTTTTCATC
1 AAGTTTTCATC
51282018 TTTGGAATAC
Statistics
Matches: 83, Mismatches: 7, Indels: 21
0.75 0.06 0.19
Matches are distributed among these distances:
11 14 0.17
12 24 0.29
13 23 0.28
14 20 0.24
15 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.11, T:0.45
Consensus pattern (11 bp):
AAGTTTTCATC
Found at i:51281965 original size:14 final size:13
Alignment explanation
Indices: 51281909--51281999 Score: 107
Period size: 13 Copynumber: 7.0 Consensus size: 13
51281899 TTTTTTTAAG
51281909 TTTTGCATCAAGT-
1 TTTT-CATCAAGTC
*
51281922 TCTT-ATCAAG-C
1 TTTTCATCAAGTC
51281933 TTTTCATCAAGTC
1 TTTTCATCAAGTC
*
51281946 TTTTCATCAAGTGT
1 TTTTCATCAAGT-C
51281960 TTTTCATCAAGTC
1 TTTTCATCAAGTC
*
51281973 TTTTCATCAAGTGT
1 TTTTCATCAAGT-C
51281987 TTTTCATCAAGTC
1 TTTTCATCAAGTC
51282000 ATTAATCAAG
Statistics
Matches: 67, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
11 9 0.13
12 6 0.09
13 28 0.42
14 24 0.36
ACGTcount: A:0.23, C:0.20, G:0.11, T:0.46
Consensus pattern (13 bp):
TTTTCATCAAGTC
Found at i:51281965 original size:27 final size:27
Alignment explanation
Indices: 51281933--51281999 Score: 134
Period size: 27 Copynumber: 2.5 Consensus size: 27
51281923 CTTATCAAGC
51281933 TTTTCATCAAGTCTTTTCATCAAGTGT
1 TTTTCATCAAGTCTTTTCATCAAGTGT
51281960 TTTTCATCAAGTCTTTTCATCAAGTGT
1 TTTTCATCAAGTCTTTTCATCAAGTGT
51281987 TTTTCATCAAGTC
1 TTTTCATCAAGTC
51282000 ATTAATCAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.22, C:0.19, G:0.10, T:0.48
Consensus pattern (27 bp):
TTTTCATCAAGTCTTTTCATCAAGTGT
Found at i:51286269 original size:7 final size:7
Alignment explanation
Indices: 51286234--51286259 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
51286224 GGTTGAGGGT
51286234 TTTTTGA
1 TTTTTGA
51286241 TTTTTGA
1 TTTTTGA
51286248 TTTTTGA
1 TTTTTGA
51286255 TTTTT
1 TTTTT
51286260 TTTAATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.77
Consensus pattern (7 bp):
TTTTTGA
Found at i:51286511 original size:18 final size:19
Alignment explanation
Indices: 51286484--51286529 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
51286474 CTGCAAAAAT
*
51286484 AAAATGAAATAA-AATAGTA
1 AAAAT-AAATAATAATAATA
51286503 AAAATAAATAATAATAATA
1 AAAATAAATAATAATAATA
*
51286522 AAATTAAA
1 AAAATAAA
51286530 ATTAAAATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 6 0.25
19 18 0.75
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (19 bp):
AAAATAAATAATAATAATA
Found at i:51297039 original size:7 final size:7
Alignment explanation
Indices: 51297027--51297061 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
51297017 TTAAAAAAAT
51297027 AATTGAG
1 AATTGAG
51297034 AATTGAG
1 AATTGAG
*
51297041 GATTGAG
1 AATTGAG
51297048 AATTGAG
1 AATTGAG
51297055 AATTGAG
1 AATTGAG
51297062 TTGAAAAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.40, C:0.00, G:0.31, T:0.29
Consensus pattern (7 bp):
AATTGAG
Found at i:51298417 original size:22 final size:21
Alignment explanation
Indices: 51298379--51298422 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
51298369 AGTTGAACCA
*
51298379 ATTTTTTTTTTAATTTTTAAT
1 ATTTTATTTTTAATTTTTAAT
*
51298400 ATTTTATTTTTATTTTTTTAAT
1 ATTTTATTTTTA-ATTTTTAAT
51298422 A
1 A
51298423 ATATATTTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (21 bp):
ATTTTATTTTTAATTTTTAAT
Found at i:51298885 original size:26 final size:24
Alignment explanation
Indices: 51298851--51298898 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
51298841 TTTTGTATAT
*
51298851 ATTTAAAATGACTTTTTATTTTTTGA
1 ATTTAAAAT-A-TTTTTATATTTTGA
*
51298877 ATTTTAAATATTTTTATATTTT
1 ATTTAAAATATTTTTATATTTT
51298899 CATAATTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 11 0.55
25 1 0.05
26 8 0.40
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.62
Consensus pattern (24 bp):
ATTTAAAATATTTTTATATTTTGA
Found at i:51301509 original size:18 final size:18
Alignment explanation
Indices: 51301488--51301530 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
51301478 TCCGGTGAGA
51301488 ATGATGAGGAGTTATCAG
1 ATGATGAGGAGTTATCAG
** * *
51301506 ATGATGCTGAGTTTTCGG
1 ATGATGAGGAGTTATCAG
51301524 ATGATGA
1 ATGATGA
51301531 AAAGGAGGCT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.28, C:0.07, G:0.33, T:0.33
Consensus pattern (18 bp):
ATGATGAGGAGTTATCAG
Found at i:51307887 original size:14 final size:15
Alignment explanation
Indices: 51307862--51307892 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
51307852 TAATATTTAG
51307862 ATTTTTGATTATTAA
1 ATTTTTGATTATTAA
51307877 ATTTTTG-TTATTAA
1 ATTTTTGATTATTAA
51307891 AT
1 AT
51307893 ATTCTTGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.61
Consensus pattern (15 bp):
ATTTTTGATTATTAA
Found at i:51311833 original size:9 final size:9
Alignment explanation
Indices: 51311810--51311850 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
51311800 ATTGCTTTTA
51311810 TATTTTCTT
1 TATTTTCTT
51311819 TA--TTCTT
1 TATTTTCTT
51311826 TATTTTCTT
1 TATTTTCTT
*
51311835 TATCTCTCTT
1 TAT-TTTCTT
51311845 TATTTT
1 TATTTT
51311851 ATAACAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
7 7 0.26
9 12 0.44
10 8 0.30
ACGTcount: A:0.12, C:0.15, G:0.00, T:0.73
Consensus pattern (9 bp):
TATTTTCTT
Found at i:51312200 original size:18 final size:17
Alignment explanation
Indices: 51312177--51312216 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
51312167 TTTCAAGATT
51312177 TTTTTTTAAATGTTCAGA
1 TTTTTTT-AATGTTCAGA
* *
51312195 TTTTTTTAATTTTCATA
1 TTTTTTTAATGTTCAGA
51312212 TTTTT
1 TTTTT
51312217 CGAGCAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.68
Consensus pattern (17 bp):
TTTTTTTAATGTTCAGA
Found at i:51312935 original size:10 final size:11
Alignment explanation
Indices: 51312920--51312985 Score: 52
Period size: 10 Copynumber: 6.1 Consensus size: 11
51312910 TCTCTCATAT
51312920 TTCCTCTC-AA
1 TTCCTCTCAAA
51312930 TTCCTCTCAAA
1 TTCCTCTCAAA
51312941 TTCCT-TCCAAAA
1 TTCCTCT-C-AAA
*
51312953 TT-CTCTCAAT
1 TTCCTCTCAAA
51312963 TTCCT-TCAAAAA
1 TTCCTCTC--AAA
51312975 TT-CTCTCAAA
1 TTCCTCTCAAA
51312985 T
1 T
51312986 CCATATTTAA
Statistics
Matches: 46, Mismatches: 2, Indels: 16
0.72 0.03 0.25
Matches are distributed among these distances:
10 19 0.41
11 15 0.33
12 12 0.26
ACGTcount: A:0.29, C:0.32, G:0.00, T:0.39
Consensus pattern (11 bp):
TTCCTCTCAAA
Found at i:51312958 original size:22 final size:22
Alignment explanation
Indices: 51312928--51312985 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
51312918 ATTTCCTCTC
*
51312928 AATTCCTCTCAAATTCCTTCCAA
1 AATT-CTCTCAAATTCCTTCAAA
*
51312951 AATTCTCTCAATTTCCTTCAAA
1 AATTCTCTCAAATTCCTTCAAA
51312973 AATTCTCTCAAAT
1 AATTCTCTCAAAT
51312986 CCATATTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
22 28 0.88
23 4 0.12
ACGTcount: A:0.33, C:0.29, G:0.00, T:0.38
Consensus pattern (22 bp):
AATTCTCTCAAATTCCTTCAAA
Found at i:51314853 original size:18 final size:18
Alignment explanation
Indices: 51314827--51314861 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
51314817 AGGTGCGTTT
*
51314827 CCTAGCCCTTATATGTAC
1 CCTAACCCTTATATGTAC
51314845 CCTAACCCTTATATGTA
1 CCTAACCCTTATATGTA
51314862 TCCTTTTCCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (18 bp):
CCTAACCCTTATATGTAC
Found at i:51315333 original size:43 final size:45
Alignment explanation
Indices: 51315286--51315370 Score: 129
Period size: 43 Copynumber: 1.9 Consensus size: 45
51315276 ATTTAGCTCC
*
51315286 ATTTTGATATTATTTTATGTAA-AAAAAAGAAATTT-TTTGAATT
1 ATTTTGATATTATTTGATGTAATAAAAAAGAAATTTATTTGAATT
* *
51315329 ATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGA
1 ATTTTGATATTATTTGATGTAATAAAAAAGAAATTTATTTGA
51315371 TGTAATAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 21 0.57
44 11 0.30
45 5 0.14
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (45 bp):
ATTTTGATATTATTTGATGTAATAAAAAAGAAATTTATTTGAATT
Found at i:51315372 original size:25 final size:25
Alignment explanation
Indices: 51315338--51315405 Score: 136
Period size: 25 Copynumber: 2.7 Consensus size: 25
51315328 TATTTTGATA
51315338 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
51315363 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
51315388 TTATTTGATGTAATAAAA
1 TTATTTGATGTAATAAAA
51315406 ACCCTAACCT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.41
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:51315465 original size:29 final size:29
Alignment explanation
Indices: 51315421--51316135 Score: 204
Period size: 29 Copynumber: 23.2 Consensus size: 29
51315411 AACCTAATTT
* *
51315421 AACCCTAAACCCTAACCTAAATTAATTAAA
1 AACCCT-AACCTTAACCTAATTTAATTAAA
51315451 AACCCTAACCTTAACCTAATTTAATTAAA
1 AACCCTAACCTTAACCTAATTTAATTAAA
* *
51315480 AACCATAA----ACCCTAATTTAATTAAA
1 AACCCTAACCTTAACCTAATTTAATTAAA
51315505 AACCCTAACCTTAACCTAATTTAATTAAA
1 AACCCTAACCTTAACCTAATTTAATTAAA
*
51315534 AACTCTAACCTAATTTAAACCCTAAACCCTAATTTAATTAAA
1 AACCCTAACC----TT-AA-CC-------TAATTTAATTAAA
51315576 AACCCTAACCTTAACCTAATTTAATTAAA
1 AACCCTAACCTTAACCTAATTTAATTAAA
* * *
51315605 AACCCTAACCCTTAA-TTAA--AAACCCTAAA
1 AACCCTAA-CCTTAACCTAATTTAA--TTAAA
** ** *
51315634 CTTAA-CCTAATTTAATTAAAAACCCTAACCTAATT-TA
1 ---AACCCTAA---CCTT---AA-CCTAATTTAATTAAA
*
51315671 AACCCTAA----ACCCTAATTTAATTAAA
1 AACCCTAACCTTAACCTAATTTAATTAAA
*
51315696 AACTCTAACCTTAACCTAATTTAATTAAA
1 AACCCTAACCTTAACCTAATTTAATTAAA
51315725 AACCCTAACCTAATTTAAACCCTAAACCCTAATTTAATTAAA
1 AACCCTAACC----TT-AA-CC-------TAATTTAATTAAA
51315767 AACCCTAACCTTAACCTAATTTAATTAAA
1 AACCCTAACCTTAACCTAATTTAATTAAA
51315796 AA--C---CC-TAACCTAATTTAATTAAA
1 AACCCTAACCTTAACCTAATTTAATTAAA
* * *
51315819 AACCTTAAACCCTTAATTAAAACCCTAACCTTAACCTAATTTA
1 AACCCT-AA-CC----TT--AA-CCTAA-TTTAA-TTAA---A
***** *
51315862 ATTAAAAACCCTAACCTAATTTAATTAAA
1 AACCCTAACCTTAACCTAATTTAATTAAA
*
51315891 AA--C---CC-TAGCCTAATTTAATTAAA
1 AACCCTAACCTTAACCTAATTTAATTAAA
51315914 AACCCTAACCTAATTTAAACCCTAAACCCTAATTTAATTAAA
1 AACCCTAACC----TT-AA-CC-------TAATTTAATTAAA
*
51315956 GACCCTAACCTTAACCTAATTTAATT---
1 AACCCTAACCTTAACCTAATTTAATTAAA
*
51315982 AACCCTAACCCTAACCTAATTTAATTAAA
1 AACCCTAACCTTAACCTAATTTAATTAAA
** *
51316011 AACCCTAACCTAATTTAAACCCTAAACCCTAATT-TA
1 AACCCTAACC----TT-AA-CCT-AA-TTTAATTAAA
*
51316047 AACCCTAAACCCTAACCTAATTTAATTAAA
1 AACCCT-AACCTTAACCTAATTTAATTAAA
51316077 AACCCTAA-C-T----TAATTTAATTAAA
1 AACCCTAACCTTAACCTAATTTAATTAAA
* *
51316100 AAACCTAACCTTACCCTAATTTAATTAAA
1 AACCCTAACCTTAACCTAATTTAATTAAA
51316129 AACCCTA
1 AACCCTA
51316136 GCTTAATTAA
Statistics
Matches: 523, Mismatches: 53, Indels: 219
0.66 0.07 0.28
Matches are distributed among these distances:
23 59 0.11
24 15 0.03
25 34 0.07
26 24 0.05
27 4 0.01
28 3 0.01
29 169 0.32
30 23 0.04
31 8 0.02
32 7 0.01
33 13 0.02
34 14 0.03
35 17 0.03
36 17 0.03
37 19 0.04
38 15 0.03
39 4 0.01
40 5 0.01
41 2 0.00
42 69 0.13
43 2 0.00
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.30
Consensus pattern (29 bp):
AACCCTAACCTTAACCTAATTTAATTAAA
Found at i:51315576 original size:71 final size:74
Alignment explanation
Indices: 51315471--51315931 Score: 320
Period size: 71 Copynumber: 6.4 Consensus size: 74
51315461 TTAACCTAAT
*
51315471 TTAATTAAAAACCATAAACCCTAATTTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAA
1 TTAATTAAAAACCCTAAACCCTAATTTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAA
*
51315536 CTCTAA-CC
66 CCCTAACCC
*
51315544 -TAATT-TAAACCCTAAACCCTAATTTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAA
1 TTAATTAAAAACCCTAAACCCTAATTTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAA
51315607 CCCTAACCC
66 CCCTAACCC
* ***
51315616 TTAATTAAAAACCCTAAACTTAACCTAATTTAATTAAAAACCCTAACC-TAA--T--TTAAACCC
1 TTAATTAAAAACCCTAAAC----CCTAATTTAATTAAAAACCCTAACCTTAACCTAATTTAATTA
* *
51315676 TAAACCCTAA--T
62 AAAACCCTAACCC
* * * ***
51315687 TTAATTAAAAACTCTAACCTTAACCTAATTTAATTAAAAACCCTAACC-TAA--T--TTAAACCC
1 TTAATTAAAAACCCTAA----ACCCTAATTTAATTAAAAACCCTAACCTTAACCTAATTTAATTA
* *
51315747 TAAACCCTAA--T
62 AAAACCCTAACCC
*
51315758 TTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAA--C---CC-TAACCTAATTTAATTA
1 TTAATTAAAAACCCTAA----ACCCTAATTTAATTAAAAACCCTAACCTTAACCTAATTTAATTA
*
51315817 AAAACCTTAAACCC
62 AAAACCCT-AACCC
*
51315831 TTAATT-AAAACCCTAACCTTAACCTAATTTAATTAAAAA--C---CC-TAACCTAATTTAATTA
1 TTAATTAAAAACCCTAA----ACCCTAATTTAATTAAAAACCCTAACCTTAACCTAATTTAATTA
* *
51315889 AAAACCCTAGCCTAAT
62 AAAACCCTAACC---C
51315905 TTAATTAAAAACCCT-AA-CCTAATTTAA
1 TTAATTAAAAACCCTAAACCCTAATTTAA
51315932 ACCCTAAACC
Statistics
Matches: 343, Mismatches: 23, Indels: 48
0.83 0.06 0.12
Matches are distributed among these distances:
66 5 0.01
68 1 0.00
69 11 0.03
70 11 0.03
71 169 0.49
72 66 0.19
73 24 0.07
74 18 0.05
75 10 0.03
77 3 0.01
78 25 0.07
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.30
Consensus pattern (74 bp):
TTAATTAAAAACCCTAAACCCTAATTTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAA
CCCTAACCC
Found at i:51315637 original size:19 final size:20
Alignment explanation
Indices: 51315596--51315638 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
51315586 TTAACCTAAT
*
51315596 TTAATTAAAAACCCTAACCC
1 TTAATTAAAAACCCTAACAC
51315616 TTAATTAAAAACCCTAA-AC
1 TTAATTAAAAACCCTAACAC
51315635 TTAA
1 TTAA
51315639 CCTAATTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.49, C:0.23, G:0.00, T:0.28
Consensus pattern (20 bp):
TTAATTAAAAACCCTAACAC
Found at i:51315684 original size:19 final size:17
Alignment explanation
Indices: 51315653--51315761 Score: 60
Period size: 19 Copynumber: 6.1 Consensus size: 17
51315643 ATTTAATTAA
51315653 AAACCCTAACCTAATTT
1 AAACCCTAACCTAATTT
51315670 AAACCCTAAACCCTAATTT
1 AAACCCT-AA-CCTAATTT
***** *
51315689 AATTAAAAACTCTAACCTT
1 AAACCCTAAC-CTAA-TTT
** *
51315708 -AA-CCTAATTTAATTAA
1 AAACCCTAACCTAATT-T
51315724 AAACCCTAACCTAATTT
1 AAACCCTAACCTAATTT
51315741 AAACCCTAAACCCTAATTT
1 AAACCCT-AA-CCTAATTT
51315760 AA
1 AA
51315762 TTAAAAACCC
Statistics
Matches: 66, Mismatches: 17, Indels: 16
0.67 0.17 0.16
Matches are distributed among these distances:
15 1 0.02
16 3 0.05
17 19 0.29
18 21 0.32
19 22 0.33
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.29
Consensus pattern (17 bp):
AAACCCTAACCTAATTT
Found at i:51315691 original size:42 final size:44
Alignment explanation
Indices: 51315557--51315706 Score: 169
Period size: 49 Copynumber: 3.3 Consensus size: 44
51315547 TTTAAACCCT
** *
51315557 AAACCCTAATTTAATTAAAAACCCTAACCTTAACCTAATTTAATTAA
1 AAACCCTAACCTAATTAAAAACCCTAAAC---ACCTAATTTAATTAA
51315604 AAACCCTAACCCTTAATTAAAAACCCTAAACTTAACCTAATTTAATTAA
1 AAACCCTAA-CC-TAATTAAAAACCCTAAAC---ACCTAATTTAATTAA
*
51315653 AAACCCTAACCTAATT-TAAACCCTAAAC-CCTAATTTAATTAA
1 AAACCCTAACCTAATTAAAAACCCTAAACACCTAATTTAATTAA
*
51315695 AAACTCTAACCT
1 AAACCCTAACCT
51315707 TAACCTAATT
Statistics
Matches: 96, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
42 25 0.26
46 11 0.11
47 14 0.15
48 2 0.02
49 44 0.46
ACGTcount: A:0.46, C:0.25, G:0.00, T:0.29
Consensus pattern (44 bp):
AAACCCTAACCTAATTAAAAACCCTAAACACCTAATTTAATTAA
Found at i:51315738 original size:191 final size:191
Alignment explanation
Indices: 51315457--51316018 Score: 725
Period size: 191 Copynumber: 2.9 Consensus size: 191
51315447 TAAAAACCCT
* *
51315457 AACCTTAACCTAATTTAATTAAAAACCATAAACCCTAATTTAATTAAAAACCCTAACCTTAACCT
1 AACCCTAACCTAA-TT-ATT-AAAACCCTAAACCCTAATTTAATTAAAAA-CCTAACCTTAACCT
*
51315522 AATTTAATTAAAAACTCTAACCTAATTTAAACCCTAAACCCTAATTTAATTAAAAACCCTAACCT
62 AATTTAATTAAAAACCCTAACCTAATTTAAACCCTAAACCCTAATTTAATTAAAAACCCTAACCT
* *
51315587 TAACCTAATTTAATTAAAAACCCTAACC-CTTAATTAAAAACCCTAAACTTAACC-TAATTTAAT
127 TAACCTAATTTAATTAAAAACCCTAACCACTTAATTAAAAACCCTAAAC----CCTTAATTAAAA
*
51315650 TAAA
188 CAAA
51315654 AACCCTAACCTAA-T-TT-AAACCCTAAACCCTAATTTAATTAAAAACTCTAACCTTAACCTAAT
1 AACCCTAACCTAATTATTAAAACCCTAAACCCTAATTTAATTAAAAAC-CTAACCTTAACCTAAT
51315716 TTAATTAAAAACCCTAACCTAATTTAAACCCTAAACCCTAATTTAATTAAAAACCCTAACCTTAA
65 TTAATTAAAAACCCTAACCTAATTTAAACCCTAAACCCTAATTTAATTAAAAACCCTAACCTTAA
* * ***
51315781 CCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCTTAAACCCTTAATTAAAACCCT
130 CCTAATTTAATTAAAAACCCTAACC--ACTTAATTAAAAACCCTAAACCCTTAATTAAAACAAA
* *
51315845 AACCTTAACCTAATTTAATTAAAAACCCT-AA-CCTAATTTAATTAAAAA-C---CC-TAGCCTA
1 AACCCTAACCTAA-TT-ATT-AAAACCCTAAACCCTAATTTAATTAAAAACCTAACCTTAACCTA
*
51315903 ATTTAATTAAAAACCCTAACCTAATTTAAACCCTAAACCCTAATTTAATTAAAGACCCTAACCTT
63 ATTTAATTAAAAACCCTAACCTAATTTAAACCCTAAACCCTAATTTAATTAAAAACCCTAACCTT
* *
51315968 AACCTAATTTAATTAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAA
128 AACCTAATTTAATTAA---AAACCCTAACC--ACTTAATTAAAAACCCTAA
51316019 CCTAATTTAA
Statistics
Matches: 335, Mismatches: 16, Indels: 33
0.87 0.04 0.09
Matches are distributed among these distances:
189 86 0.26
190 5 0.01
191 151 0.45
192 30 0.09
193 4 0.01
194 18 0.05
195 20 0.06
196 2 0.01
197 19 0.06
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.30
Consensus pattern (191 bp):
AACCCTAACCTAATTATTAAAACCCTAAACCCTAATTTAATTAAAAACCTAACCTTAACCTAATT
TAATTAAAAACCCTAACCTAATTTAAACCCTAAACCCTAATTTAATTAAAAACCCTAACCTTAAC
CTAATTTAATTAAAAACCCTAACCACTTAATTAAAAACCCTAAACCCTTAATTAAAACAAA
Found at i:51315769 original size:42 final size:42
Alignment explanation
Indices: 51315710--51316216 Score: 335
Period size: 42 Copynumber: 11.0 Consensus size: 42
51315700 CTAACCTTAA
51315710 CCTAATTTAATTAAAAACCCTAACCTAATTTAAACCCTAAAC
1 CCTAATTTAATTAAAAACCCTAACCTAATTTAAACCCTAAAC
51315752 CCTAATTTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCT-AA-
1 CCTAATTTAATTAAAAA--C---CC-TAACCTAA--T--TT--AAACCCTAAAC
* * *
51315804 CCTAATTTAATTAAAAACCTTAAACCCTTAATTAAAACCCTAACCTTAA
1 CCTAATTTAATTAAAAACCCT-AA-CC-TAATTTAAACCCTAA----AC
*
51315853 CCTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCT--AG
1 CCTAATTTAATTAAAAACCCTAACCTAA--T--TT--AAACCCTAAAC
51315899 CCTAATTTAATTAAAAACCCTAACCTAATTTAAACCCTAAAC
1 CCTAATTTAATTAAAAACCCTAACCTAATTTAAACCCTAAAC
* *
51315941 CCTAATTTAATTAAAGACCCTAACCTTAACCTAATTTAATTAACCCTAACCCTAA
1 CCTAATTTAATT-AA-A----AACCCTAACCTAATTT-A--AACCCTAA----AC
51315996 CCTAATTTAATTAAAAACCCTAACCTAATTTAAACCCTAAAC
1 CCTAATTTAATTAAAAACCCTAACCTAATTTAAACCCTAAAC
****
51316038 CCTAATTTAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCT-AA-
1 CCTAATTT-AATTAAAAACCCTAACCTAA--T--TT--AAACCCTAAAC
* * ****
51316085 CTTAATTTAATTAAAAAACCTAACCTTACCCTAATTT-AATTAAAAAC
1 CCTAATTTAATT-AAAAA-C---CC-TAACCTAATTTAAACCCTAAAC
** *
51316132 CCTAGCTTAATTAAAAACCCTAACCTAATTTAAACCTTAAAC
1 CCTAATTTAATTAAAAACCCTAACCTAATTTAAACCCTAAAC
51316174 CCTAATTTAATTAAAAACCCTAACCTAATTTAAACCCTAAAC
1 CCTAATTTAATTAAAAACCCTAACCTAATTTAAACCCTAAAC
51316216 C
1 C
51316217 TTAAACTCTA
Statistics
Matches: 372, Mismatches: 35, Indels: 116
0.71 0.07 0.22
Matches are distributed among these distances:
40 7 0.02
41 10 0.03
42 89 0.24
43 25 0.07
44 4 0.01
45 5 0.01
46 50 0.13
47 29 0.08
48 35 0.09
49 46 0.12
50 4 0.01
51 10 0.03
52 33 0.09
53 3 0.01
54 9 0.02
55 13 0.03
ACGTcount: A:0.45, C:0.25, G:0.01, T:0.30
Consensus pattern (42 bp):
CCTAATTTAATTAAAAACCCTAACCTAATTTAAACCCTAAAC
Found at i:51315944 original size:19 final size:17
Alignment explanation
Indices: 51315913--51315950 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 17
51315903 ATTTAATTAA
51315913 AAACCCTAACCTAATTT
1 AAACCCTAACCTAATTT
51315930 AAACCCTAAACCCTAATTT
1 AAACCCT-AA-CCTAATTT
51315949 AA
1 AA
51315951 TTAAAGACCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.37
18 2 0.11
19 10 0.53
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.26
Consensus pattern (17 bp):
AAACCCTAACCTAATTT
Found at i:51316041 original size:19 final size:19
Alignment explanation
Indices: 51316010--51316061 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
51316000 ATTTAATTAA
51316010 AAACCCT-AA-CCTAATTT
1 AAACCCTAAACCCTAATTT
51316027 AAACCCTAAACCCTAATTT
1 AAACCCTAAACCCTAATTT
51316046 AAACCCTAAACCCTAA
1 AAACCCTAAACCCTAA
51316062 CCTAATTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.21
18 2 0.06
19 24 0.73
ACGTcount: A:0.44, C:0.33, G:0.00, T:0.23
Consensus pattern (19 bp):
AAACCCTAAACCCTAATTT
Found at i:51316095 original size:23 final size:23
Alignment explanation
Indices: 51315401--51316248 Score: 427
Period size: 23 Copynumber: 35.7 Consensus size: 23
51315391 TTTGATGTAA
*
51315401 TAAAAACCCTAACCTAATTTAAC
1 TAAAAACCCTAACCTAATTTAAT
*** *
51315424 CCTAAACCCTAACCTAAATTAAT
1 TAAAAACCCTAACCTAATTTAAT
51315447 TAAAAACCCTAACCTTAACCTAATTTAAT
1 TAAAAA--C---CC-TAACCTAATTTAAT
*
51315476 TAAAAACCATAAACCCTAATTTAAT
1 TAAAAACCCT-AA-CCTAATTTAAT
51315501 TAAAAACCCTAACCTTAACCTAATTTAAT
1 TAAAAA--C---CC-TAACCTAATTTAAT
*
51315530 TAAAAACTCTAACCTAA--T--T
1 TAAAAACCCTAACCTAATTTAAT
51315549 T--AAACCCTAAACCCTAATTTAAT
1 TAAAAACCCT-AA-CCTAATTTAAT
51315572 TAAAAACCCTAACCTTAACCTAATTTAAT
1 TAAAAA--C---CC-TAACCTAATTTAAT
*
51315601 TAAAAACCCTAACC---CTTAAT
1 TAAAAACCCTAACCTAATTTAAT
51315621 TAAAAACCCTAAACTTAACCTAATTTAAT
1 TAAAAA-CC----C-TAACCTAATTTAAT
51315650 TAAAAACCCTAACCTAA--T--T
1 TAAAAACCCTAACCTAATTTAAT
51315669 T--AAACCCTAAACCCTAATTTAAT
1 TAAAAACCCT-AA-CCTAATTTAAT
51315692 TAAAAACTCTAACCTTAACCTAATTTAAT
1 TAAAAA--C---CC-TAACCTAATTTAAT
51315721 TAAAAACCCTAACCTAA--T--T
1 TAAAAACCCTAACCTAATTTAAT
51315740 T--AAACCCTAAACCCTAATTTAAT
1 TAAAAACCCT-AA-CCTAATTTAAT
51315763 TAAAAACCCTAACCTTAACCTAATTTAAT
1 TAAAAA--C---CC-TAACCTAATTTAAT
51315792 TAAAAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
* * *
51315815 TAAAAACCTTAAACCCTTAATTAAAA
1 TAAAAACCCT-AA-CC-TAATTTAAT
**** *
51315841 CCCTAACCTTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
51315864 TAAAAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
*
51315887 TAAAAACCCTAGCCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
51315910 TAAAAACCCTAACCTAA--T--T
1 TAAAAACCCTAACCTAATTTAAT
51315929 T--AAACCCTAAACCCTAATTTAAT
1 TAAAAACCCT-AA-CCTAATTTAAT
*
51315952 TAAAGACCCTAACCTTAACCTAATTTAAT
1 T-AA-A----AACCCTAACCTAATTTAAT
**
51315981 TAACCCTAACCCTAACCTAATTTAAT
1 TAA--AA-ACCCTAACCTAATTTAAT
51316007 TAAAAACCCTAACCTAA--T--T
1 TAAAAACCCTAACCTAATTTAAT
*
51316026 T--AAACCCTAAACCCTAATTTAAAC
1 TAAAAACCCT-AA-CCTAATTT-AAT
***
51316050 CCTAAACCCTAACCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
*
51316073 TAAAAACCCTAACTTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
*
51316096 TAAAAAACCTAACCTTACCCTAATTTAAT
1 T-AAAAA-C---CC-TAACCTAATTTAAT
*
51316125 TAAAAACCCT-AGC----TTAAT
1 TAAAAACCCTAACCTAATTTAAT
51316143 TAAAAACCCTAACCTAATTTAAACCT
1 TAAAAACCCTAACCTAATTT-AA--T
51316169 T--AAA--C---CCTAATTTAAT
1 TAAAAACCCTAACCTAATTTAAT
*
51316185 TAAAAACCCTAACCTAATTTAAAC
1 TAAAAACCCTAACCTAATTT-AAT
*** *
51316209 CCTAAACCTTAAACTCTAATTTAAT
1 TAAAAACCCT-AAC-CTAATTTAAT
*
51316234 TAAAAACACTAACCT
1 TAAAAACCCTAACCT
51316249 TAACGTAATG
Statistics
Matches: 647, Mismatches: 61, Indels: 234
0.69 0.06 0.25
Matches are distributed among these distances:
16 2 0.00
17 34 0.05
18 30 0.05
19 45 0.07
20 12 0.02
21 12 0.02
22 2 0.00
23 192 0.30
24 46 0.07
25 45 0.07
26 54 0.08
27 11 0.02
28 13 0.02
29 123 0.19
30 17 0.03
31 9 0.01
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.30
Consensus pattern (23 bp):
TAAAAACCCTAACCTAATTTAAT
Found at i:51316135 original size:18 final size:18
Alignment explanation
Indices: 51316112--51316213 Score: 89
Period size: 18 Copynumber: 5.4 Consensus size: 18
51316102 ACCTAACCTT
*
51316112 ACCCTAATTTAATTAAAA
1 ACCCTAACTTAATTAAAA
*
51316130 ACCCTAGCTTAATTAAAA
1 ACCCTAACTTAATTAAAA
*
51316148 ACCCTAACCTAATTTAAACCTTAA
1 ACCCTAACTTAA-TT-AA----AA
*
51316172 ACCCTAATTTAATTAAAA
1 ACCCTAACTTAATTAAAA
* *
51316190 ACCCTAACCTAATT-TAA
1 ACCCTAACTTAATTAAAA
51316207 ACCCTAA
1 ACCCTAA
51316214 ACCTTAAACT
Statistics
Matches: 69, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
17 9 0.13
18 40 0.58
19 2 0.03
20 2 0.03
22 2 0.03
23 2 0.03
24 12 0.17
ACGTcount: A:0.45, C:0.25, G:0.01, T:0.29
Consensus pattern (18 bp):
ACCCTAACTTAATTAAAA
Found at i:51316173 original size:24 final size:23
Alignment explanation
Indices: 51316146--51316232 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 23
51316136 GCTTAATTAA
51316146 AAACCCTAACCTAATTTAAACCTT
1 AAACCCTAACCTAATTTAAACC-T
**
51316170 AAACCCTAATTTAA-TT-AA---
1 AAACCCTAACCTAATTTAAACCT
51316188 AAACCCTAACCTAATTTAAACCCT
1 AAACCCTAACCTAATTTAAA-CCT
*
51316212 AAACCTTAAACTCTAATTTAA
1 AAACCCT-AAC-CTAATTTAA
51316233 TTAAAAACAC
Statistics
Matches: 50, Mismatches: 5, Indels: 14
0.72 0.07 0.20
Matches are distributed among these distances:
18 12 0.24
19 2 0.04
20 2 0.04
22 2 0.04
23 2 0.04
24 18 0.36
25 3 0.06
26 9 0.18
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.30
Consensus pattern (23 bp):
AAACCCTAACCTAATTTAAACCT
Found at i:51316178 original size:215 final size:213
Alignment explanation
Indices: 51315582--51316164 Score: 619
Period size: 214 Copynumber: 2.7 Consensus size: 213
51315572 TAAAAACCCT
* * *
51315582 AACCTTAACCTAATTTAATTAAAAACCCT-AACCCTTAATTAAAAACCCTAAACTTAACCTAATT
1 AACCCTAACCTAA-TT-ATT-AAAACCCTAAACCCTTAATT-AAAACCCTAACCCTAACCTAATT
*
51315646 TAATTAAAAACCCTAACCTAA--T--TT--AAACCCTAAACCCTAATTTAATTAAAAACTCTAAC
62 TAATTAAAAACCCTAACCTAATTTAATTAAAAACCCT--ACCCTAATTTAATTAAAAACCCTAAC
* **** ** * *
51315705 CTTAACCTAATTTAATTAAAAACCCTAACCTAATTTAA-ACCCTAA----ACCCTAATTTAATTA
125 C-TAA-TTAA---AACCCTAAACCCTAATTTAATTAAAGACCCTAACCTTAACCTAATTTAATT-
*
51315765 AAAACCCTAACCTTAACCTAATTTAATTAAA
184 -AAACCCTAACCCTAACCTAATTTAATTAAA
* *
51315796 AACCCTAACCTAATTTAATTAAAAACCTTAAACCCTTAATTAAAACCCTAACCTTAACCTAATTT
1 AACCCTAACCTAA-TT-ATT-AAAACCCTAAACCCTTAATTAAAACCCTAACCCTAACCTAATTT
*
51315861 AATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAGCCTAATTTAATTAAAAACCCTAACCTA
63 AATTAAAAACCCTAACCTAATTTAATTAAAAACCCTACCCTAATTTAATTAAAAACCCTAACCTA
*
51315926 ATTTAAACCCTAAACCCTAATTTAATTAAAGACCCTAACCTTAACCTAATTTAATT-AACCCTAA
128 ATTAAAACCCTAAACCCTAATTTAATTAAAGACCCTAACCTTAACCTAATTTAATTAAACCCTAA
51315990 CCCTAACCTAATTTAATTAAA
193 CCCTAACCTAATTTAATTAAA
*
51316011 AACCCTAACCTAA-T-TT-AAACCCTAAACCC-TAATTTAAACCCTAAACCCTAACCTAATTTAA
1 AACCCTAACCTAATTATTAAAACCCTAAACCCTTAATTAAAACCCT-AACCCTAACCTAATTTAA
* *
51316072 TTAAAAACCCTAACTTAATTTAATTAAAAAACCTAACCTTACCCTAATTTAATTAAAAACCCTAG
65 TTAAAAACCCTAACCTAATTTAATT-AAAAA-C---CC-TACCCTAATTTAATTAAAAACCCTAA
*
51316137 CTTAATTAAAAACCCT-AA-CCTAATTTAA
124 CCTAATT-AAAACCCTAAACCCTAATTTAA
51316165 ACCTTAAACC
Statistics
Matches: 325, Mismatches: 24, Indels: 40
0.84 0.06 0.10
Matches are distributed among these distances:
208 12 0.04
209 53 0.16
210 5 0.02
211 3 0.01
213 19 0.06
214 89 0.27
215 84 0.26
216 10 0.03
217 3 0.01
218 40 0.12
220 7 0.02
ACGTcount: A:0.45, C:0.25, G:0.01, T:0.30
Consensus pattern (213 bp):
AACCCTAACCTAATTATTAAAACCCTAAACCCTTAATTAAAACCCTAACCCTAACCTAATTTAAT
TAAAAACCCTAACCTAATTTAATTAAAAACCCTACCCTAATTTAATTAAAAACCCTAACCTAATT
AAAACCCTAAACCCTAATTTAATTAAAGACCCTAACCTTAACCTAATTTAATTAAACCCTAACCC
TAACCTAATTTAATTAAA
Found at i:51316395 original size:116 final size:116
Alignment explanation
Indices: 51316254--51316471 Score: 391
Period size: 116 Copynumber: 1.9 Consensus size: 116
51316244 AACCTTAACG
* *
51316254 TAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAAATAATAATTTTACATAATTTGATA
1 TAATGTTAAATTTGGAAAAATGTTTTGACTGGTACTAACAAATAATAATTGTACATAATTTGATA
*
51316319 ATTTTACTAACCATTAATACAATTTTTTGACTTAATAATTTTACATTCACA
66 ATTTTACTAACCATTAATACAATTTTTTGACGTAATAATTTTACATTCACA
* *
51316370 TAATGTTAAATTTGGAAAAATGTTTTGACTGGTACTAACAATTAATAATTGTATATAATTTGATA
1 TAATGTTAAATTTGGAAAAATGTTTTGACTGGTACTAACAAATAATAATTGTACATAATTTGATA
51316435 ATTTTACTAACCATTAATACAATTTTTTGACGTAATA
66 ATTTTACTAACCATTAATACAATTTTTTGACGTAATA
51316472 CAATTTATCA
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
116 97 1.00
ACGTcount: A:0.39, C:0.09, G:0.10, T:0.42
Consensus pattern (116 bp):
TAATGTTAAATTTGGAAAAATGTTTTGACTGGTACTAACAAATAATAATTGTACATAATTTGATA
ATTTTACTAACCATTAATACAATTTTTTGACGTAATAATTTTACATTCACA
Found at i:51318562 original size:123 final size:123
Alignment explanation
Indices: 51318338--51318687 Score: 508
Period size: 126 Copynumber: 2.8 Consensus size: 123
51318328 CCCAAACATG
51318338 CTACT-TAGCAAAAGCGCGTCCACGAGTGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAG-GCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* * *
51318402 TAGAAGCAATTTTTTATTATTTTCTCAGAAACGTCAAAAA-AATTATTTCTTACATGAC
65 TAGAAGCGATTTTATACTATTTTCTCAGAAACGTCAAAAATAATTATTTCTTACATGAC
*
51318460 CTACTGTAGCAAAAGCGCG-CTAACGAGGCTGCGATTTCACAAATTCTTCTCAAATAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTC-CACGAGGC-GCGATTTCACAAATTCTTCTCAAATAGCATCCTG
* * *
51318524 CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATAATTATTTCTTCCGTGAC
64 CTAGAAGCGATTTTATACTATTTTCTCAGAAACGTC--AAAAATAATTATTTCTTACATGAC
* * * *
51318586 CTACTGCAGCAAAAGCACGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATACCATTCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGA-GGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* *
51318651 TAGAAGCGATTTTATACTATTTTATCAGAAACATCAA
65 TAGAAGCGATTTTATACTATTTTCTCAGAAACGTCAA
51318688 CTCGAAATTA
Statistics
Matches: 205, Mismatches: 15, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
122 8 0.04
123 84 0.41
124 2 0.01
125 5 0.02
126 102 0.50
127 4 0.02
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.30
Consensus pattern (123 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGCT
AGAAGCGATTTTATACTATTTTCTCAGAAACGTCAAAAATAATTATTTCTTACATGAC
Found at i:51320344 original size:19 final size:19
Alignment explanation
Indices: 51320300--51320361 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
51320290 ACAATAATAG
* *
51320300 ATAAATTAATATTTTAAGT
1 ATAAAATAATATTTTAAAT
51320319 ATCAAAATAAT-TTTTCAAAT
1 AT-AAAATAATATTTT-AAAT
* * *
51320339 ATAAAATATTATATTAAAA
1 ATAAAATAATATTTTAAAT
51320358 ATAA
1 ATAA
51320362 GGTTTAGTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
19 20 0.57
20 15 0.43
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.40
Consensus pattern (19 bp):
ATAAAATAATATTTTAAAT
Found at i:51321667 original size:12 final size:12
Alignment explanation
Indices: 51321652--51321676 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51321642 GATGAAAATG
51321652 TAAATAAAGAAA
1 TAAATAAAGAAA
51321664 TAAATAAAGAAA
1 TAAATAAAGAAA
51321676 T
1 T
51321677 GAACAAGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.20
Consensus pattern (12 bp):
TAAATAAAGAAA
Found at i:51322104 original size:44 final size:44
Alignment explanation
Indices: 51322052--51322267 Score: 118
Period size: 44 Copynumber: 4.9 Consensus size: 44
51322042 CCACTGTAAC
* * *
51322052 CTTAGGGAGGTAAAATTCGCTATCTTCGATCTGCTCCACTACTG
1 CTTAGGGAGATAAAATTCGCTATCTTCAATCTACTCCACTACTG
* ** * * * *
51322096 CTTAGGGAGATAAGA-TCTATAATCCTCAATCTATTCCACTGCTA
1 CTTAGGGAGATAAAATTCGCT-ATCTTCAATCTACTCCACTACTG
** * * ** * *
51322140 CCCAGGGAGATAGAATT-ACTGGCTTCAATGTACTCCATTGTAAC--
1 CTTAGGGAGATAAAATTCGCTATCTTCAATCTACTCCA--CT-ACTG
* * * *
51322184 CTTAGGGAGGTAAAATTCGCTATCTTCGATCTGCTCCATTACTG
1 CTTAGGGAGATAAAATTCGCTATCTTCAATCTACTCCACTACTG
* ** *
51322228 CTTAGGGAGATAAGA-TCTATAATCTTCAATCTATTCCACT
1 CTTAGGGAGATAAAATTCGCT-ATCTTCAATCTACTCCACT
51322268 GCTACCCAGG
Statistics
Matches: 121, Mismatches: 42, Indels: 18
0.67 0.23 0.10
Matches are distributed among these distances:
42 2 0.02
43 19 0.16
44 83 0.69
45 16 0.13
46 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.32
Consensus pattern (44 bp):
CTTAGGGAGATAAAATTCGCTATCTTCAATCTACTCCACTACTG
Found at i:51322353 original size:132 final size:132
Alignment explanation
Indices: 51322027--51322329 Score: 552
Period size: 132 Copynumber: 2.3 Consensus size: 132
51322017 TAAGACTTGT
51322027 TGGCTTCAATGTACTCCACTGTAACCTTAGGGAGGTAAAATTCGCTATCTTCGATCTGCTCCACT
1 TGGCTTCAATGTACTCCACTGTAACCTTAGGGAGGTAAAATTCGCTATCTTCGATCTGCTCCACT
51322092 ACTGCTTAGGGAGATAAGATCTATAATCCTCAATCTATTCCACTGCTACCCAGGGAGATAGAATT
66 ACTGCTTAGGGAGATAAGATCTATAATCCTCAATCTATTCCACTGCTACCCAGGGAGATAGAATT
51322157 AC
131 AC
* *
51322159 TGGCTTCAATGTACTCCATTGTAACCTTAGGGAGGTAAAATTCGCTATCTTCGATCTGCTCCATT
1 TGGCTTCAATGTACTCCACTGTAACCTTAGGGAGGTAAAATTCGCTATCTTCGATCTGCTCCACT
*
51322224 ACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCTACCCAGGGAGATAGAATT
66 ACTGCTTAGGGAGATAAGATCTATAATCCTCAATCTATTCCACTGCTACCCAGGGAGATAGAATT
51322289 AC
131 AC
* * *
51322291 TGGCTTCAAAGTACTCCACTGTAATCGTAGGGAGGTAAA
1 TGGCTTCAATGTACTCCACTGTAACCTTAGGGAGGTAAA
51322330 GTCTGCCATC
Statistics
Matches: 164, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 164 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (132 bp):
TGGCTTCAATGTACTCCACTGTAACCTTAGGGAGGTAAAATTCGCTATCTTCGATCTGCTCCACT
ACTGCTTAGGGAGATAAGATCTATAATCCTCAATCTATTCCACTGCTACCCAGGGAGATAGAATT
AC
Found at i:51322538 original size:128 final size:124
Alignment explanation
Indices: 51322423--51322834 Score: 397
Period size: 128 Copynumber: 3.3 Consensus size: 124
51322413 GATTACTATC
* * *
51322423 TTCAATCTGTTCCACTGTAATCTCAGGGAGATAAG-AT-CTGAAATTCT-TCGGTCTGTAATCTT
1 TTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGTATCCTGAAA-TCTATCCG-CTGTAATCTC
* * *
51322485 AGGGAGATAAGACCTAATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTAT
64 AGGGAGATAAGACCTAATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTTAT
* **
51322546 TTTAATCTGCTCCACTGTAATCTCAGGGAGATAAGATTATCGCTTCAATCTACTCCGCTGTAATC
1 TTCAATCTGCTCCACTGTAATCTCAGGGAGATAAG--TATC-CTGAAATCTA-TCCGCTGTAATC
* * * *
51322611 TCAGGGAGATAAGACCTGATATGATCTACTCTACTGTAACTTCTGAGAGATAAGATC-TGTGAT
62 TCAGGGAGATAAGACCTAATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCAT-TTAT
* ** * ** *
51322674 TTTAATCCACTCCACTGTAA-CTTCAGGGAGATAGGATTATCGCTTCAATCTGCTCCGCTGTAAT
1 TTCAATCTGCTCCACTGTAATC-TCAGGGAGATA--AGTATC-CTGAAATCT-ATCCGCTGTAAT
** * *
51322738 CTCAGGGAGATAAGACCGGATACGATCTATTCTACTGTAACTTCAGAGAGATAAGATC-TGTGAT
61 CTCAGGGAGATAAGACCTAATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCAT-TTAT
* ** *
51322802 TTTAATCCACTCCACTATAA-CTTCAGGGAGATA
1 TTCAATCTGCTCCACTGTAATC-TCAGGGAGATA
51322835 GGAATATCGG
Statistics
Matches: 256, Mismatches: 21, Indels: 19
0.86 0.07 0.06
Matches are distributed among these distances:
123 33 0.13
126 2 0.01
127 5 0.02
128 212 0.83
129 3 0.01
130 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31
Consensus pattern (124 bp):
TTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGTATCCTGAAATCTATCCGCTGTAATCTCAG
GGAGATAAGACCTAATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTTAT
Found at i:51322577 original size:44 final size:44
Alignment explanation
Indices: 51322506--51322834 Score: 200
Period size: 44 Copynumber: 7.7 Consensus size: 44
51322496 ACCTAATGCG
** * * *
51322506 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCT-TTATTTTA
1 ATCTACTCCACTGTAACTTCAGGGAGATAAGAT-CTATCACTTTA
* * *
51322550 ATCTGCTCCACTGTAA-TCTCAGGGAGATAAGAT-TATCGCTTCA
1 ATCTACTCCACTGTAACT-TCAGGGAGATAAGATCTATCACTTTA
* * *
51322593 ATCTACTCCGCTGTAA-TCTCAGGGAGATAAGACCTGAT-A---TG
1 ATCTACTCCACTGTAACT-TCAGGGAGATAAGATCT-ATCACTTTA
* * * * * *
51322634 ATCTACTCTACTGTAACTTCTGAGAGATAAGATCTGTGATTTTA
1 ATCTACTCCACTGTAACTTCAGGGAGATAAGATCTATCACTTTA
* * * *
51322678 ATCCACTCCACTGTAACTTCAGGGAGATAGGAT-TATCGCTTCA
1 ATCTACTCCACTGTAACTTCAGGGAGATAAGATCTATCACTTTA
* * * * *
51322721 ATCTGCTCCGCTGTAA-TCTCAGGGAGATAAGACCGGAT-AC---G
1 ATCTACTCCACTGTAACT-TCAGGGAGATAAGATC-TATCACTTTA
* * * * * *
51322762 ATCTATTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTA
1 ATCTACTCCACTGTAACTTCAGGGAGATAAGATCTATCACTTTA
* *
51322806 ATCCACTCCACTATAACTTCAGGGAGATA
1 ATCTACTCCACTGTAACTTCAGGGAGATA
51322835 GGAATATCGG
Statistics
Matches: 214, Mismatches: 54, Indels: 34
0.71 0.18 0.11
Matches are distributed among these distances:
40 2 0.01
41 56 0.26
42 4 0.02
43 66 0.31
44 82 0.38
45 4 0.02
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (44 bp):
ATCTACTCCACTGTAACTTCAGGGAGATAAGATCTATCACTTTA
Found at i:51322577 original size:85 final size:85
Alignment explanation
Indices: 51322475--51322834 Score: 220
Period size: 85 Copynumber: 4.2 Consensus size: 85
51322465 ATTCTTCGGT
* * **
51322475 CTGTAATCTTAGGGAGATAAGACCTAATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATC
1 CTGTAATCTCAGGGAGATAAGACCTAATGCAATCTACTCCACTGTAACTTCAGAGAGATAAGAT-
* *
51322540 CT-TTATTTTAATCTGCTCCA
65 CTATGATTTTAATCTACTCCA
* * *
51322560 CTGTAATCTCAGGGAGATAAGA--TTATCGCTTCAATCTACTCCGCTGTAA-TCTCAGGGAGATA
1 CTGTAATCTCAGGGAGATAAGACCTAAT-G---CAATCTACTCCACTGTAACT-TCAGAGAGATA
* * * *
51322622 AGA-C-CTGA-TATGATCTACTCTA
61 AGATCTATGATTTTAATCTACTCCA
* * * * ** * * *
51322644 CTGTAA-CTTCTGAGAGATAAGATCTGTGATTTTAATCCACTCCACTGTAACTTCAGGGAGATAG
1 CTGTAATC-TCAGGGAGATAAGA-C-CT-AATGCAATCTACTCCACTGTAACTTCAGAGAGATAA
* * * *
51322708 GAT-TATCG-CTTCAATCTGCTCCG
62 GATCTAT-GATTTTAATCTACTCCA
** * * * *
51322731 CTGTAATCTCAGGGAGATAAGACCGGATACGATCTATTCTACTGTAACTTCAGAGAGATAAGATC
1 CTGTAATCTCAGGGAGATAAGACCTAATGCAATCTACTCCACTGTAACTTCAGAGAGATAAGATC
* *
51322796 TGTGATTTTAATCCACTCCA
66 TATGATTTTAATCTACTCCA
*
51322816 CTATAA-CTTCAGGGAGATA
1 CTGTAATC-TCAGGGAGATA
51322835 GGAATATCGG
Statistics
Matches: 207, Mismatches: 47, Indels: 42
0.70 0.16 0.14
Matches are distributed among these distances:
83 4 0.02
84 60 0.29
85 80 0.39
86 4 0.02
87 56 0.27
88 2 0.01
89 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.31
Consensus pattern (85 bp):
CTGTAATCTCAGGGAGATAAGACCTAATGCAATCTACTCCACTGTAACTTCAGAGAGATAAGATC
TATGATTTTAATCTACTCCA
Found at i:51322609 original size:43 final size:42
Alignment explanation
Indices: 51322549--51322752 Score: 173
Period size: 43 Copynumber: 4.8 Consensus size: 42
51322539 CCTTTATTTT
*
51322549 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTATCGCTTC
1 AATCTACTCCACTGTAATCTCAGGGAGATAAGATTAT-GCTTC
* ** *
51322592 AATCTACTCCGCTGTAATCTCAGGGAGATAAGA-CCTGATAT-
1 AATCTACTCCACTGTAATCTCAGGGAGATAAGATTATGCT-TC
* * * * * * *
51322633 GATCTACTCTACTGTAA-CTTCTGAGAGATAAGATCTGTGATTTT
1 AATCTACTCCACTGTAATC-TCAGGGAGATAAGAT-TATG-CTTC
* *
51322677 AATCCACTCCACTGTAA-CTTCAGGGAGATAGGATTATCGCTTC
1 AATCTACTCCACTGTAATC-TCAGGGAGATAAGATTAT-GCTTC
* *
51322720 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
1 AATCTACTCCACTGTAATCTCAGGGAGATAAGA
51322753 CCGGATACGA
Statistics
Matches: 127, Mismatches: 26, Indels: 16
0.75 0.15 0.09
Matches are distributed among these distances:
40 1 0.01
41 28 0.22
42 2 0.02
43 65 0.51
44 31 0.24
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.30
Consensus pattern (42 bp):
AATCTACTCCACTGTAATCTCAGGGAGATAAGATTATGCTTC
Found at i:51322835 original size:128 final size:128
Alignment explanation
Indices: 51322475--51322854 Score: 584
Period size: 128 Copynumber: 3.0 Consensus size: 128
51322465 ATTCTTCGGT
* * * *
51322475 CTGTAATCTTAGGGAGATAAGACCTAATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATC
1 CTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGAT-
* ** * *
51322540 CT-TTATTTTAATCTGCTCCACTGTAA-TCTCAGGGAGATAAGATTATCGCTTCAATCTACTCCG
65 CTGTGATTTTAATCCACTCCACTGTAACT-TCAGGGAGATAGGATTATCGCTTCAATCTGCTCCG
* *
51322603 CTGTAATCTCAGGGAGATAAGACCTGATATGATCTACTCTACTGTAACTTCTGAGAGATAAGATC
1 CTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
51322668 TGTGATTTTAATCCACTCCACTGTAACTTCAGGGAGATAGGATTATCGCTTCAATCTGCTCCG
66 TGTGATTTTAATCCACTCCACTGTAACTTCAGGGAGATAGGATTATCGCTTCAATCTGCTCCG
* *
51322731 CTGTAATCTCAGGGAGATAAGACCGGATACGATCTATTCTACTGTAACTTCAGAGAGATAAGATC
1 CTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
* *
51322796 TGTGATTTTAATCCACTCCACTATAACTTCAGGGAGATAGGAATATCGGCTTCAATCTG
66 TGTGATTTTAATCCACTCCACTGTAACTTCAGGGAGATAGGATTATC-GCTTCAATCTG
51322855 ATGTGATCTA
Statistics
Matches: 232, Mismatches: 17, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
127 2 0.01
128 218 0.94
129 12 0.05
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (128 bp):
CTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
TGTGATTTTAATCCACTCCACTGTAACTTCAGGGAGATAGGATTATCGCTTCAATCTGCTCCG
Found at i:51325162 original size:45 final size:42
Alignment explanation
Indices: 51325112--51325194 Score: 103
Period size: 42 Copynumber: 1.9 Consensus size: 42
51325102 CATTCTCATT
*
51325112 TTTTCATCTAGATTTCTCTTTTTTCATTCTTCTTTCTTTTTCTCA
1 TTTTCATCTAGATTT-TCATTTTT--TTCTTCTTTCTTTTTCTCA
* * *
51325157 TTTTCATTTTGATTTTGATTTTTTTCTTCTTTCTTTTT
1 TTTTCATCTAGATTTTCATTTTTTTCTTCTTTCTTTTT
51325195 TTTTATTTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 15 0.44
44 6 0.18
45 13 0.38
ACGTcount: A:0.10, C:0.17, G:0.04, T:0.70
Consensus pattern (42 bp):
TTTTCATCTAGATTTTCATTTTTTTCTTCTTTCTTTTTCTCA
Found at i:51325177 original size:12 final size:12
Alignment explanation
Indices: 51325156--51325256 Score: 64
Period size: 12 Copynumber: 8.4 Consensus size: 12
51325146 TCTTTTTCTC
51325156 ATTTTCATTTTG
1 ATTTTCATTTTG
*
51325168 ATTTTGATTTT-
1 ATTTTCATTTTG
* * *
51325179 TTTCTTCTTTCTTT
1 ATT-TTCATT-TTG
* *
51325193 TTTTTTATTTTG
1 ATTTTCATTTTG
*
51325205 ATTTTTGATTTT-
1 A-TTTTCATTTTG
*
51325217 -TTTTCATTTTC
1 ATTTTCATTTTG
51325228 ATTTTCATTTTG
1 ATTTTCATTTTG
* *
51325240 ACTTTGATTTTG
1 ATTTTCATTTTG
51325252 ATTTT
1 ATTTT
51325257 TCTTTTTCTT
Statistics
Matches: 69, Mismatches: 14, Indels: 12
0.73 0.15 0.13
Matches are distributed among these distances:
10 9 0.13
11 2 0.03
12 40 0.58
13 15 0.22
14 3 0.04
ACGTcount: A:0.13, C:0.08, G:0.07, T:0.72
Consensus pattern (12 bp):
ATTTTCATTTTG
Found at i:51325208 original size:6 final size:6
Alignment explanation
Indices: 51325194--51325256 Score: 58
Period size: 6 Copynumber: 10.7 Consensus size: 6
51325184 TCTTTCTTTT
* * * *
51325194 TTTTTA TTTTGA TTTTTGA TTTT-- TTTTCA TTTTCA TTTTCA TTTTGA
1 TTTTGA TTTTGA -TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA
*
51325241 CTTTGA TTTTGA TTTT
1 TTTTGA TTTTGA TTTT
51325257 TCTTTTTCTT
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
4 4 0.08
6 40 0.80
7 6 0.12
ACGTcount: A:0.14, C:0.06, G:0.08, T:0.71
Consensus pattern (6 bp):
TTTTGA
Found at i:51329435 original size:12 final size:12
Alignment explanation
Indices: 51329420--51329444 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51329410 GATGAAAATG
51329420 TAAATAAAGAAA
1 TAAATAAAGAAA
51329432 TAAATAAAGAAA
1 TAAATAAAGAAA
51329444 T
1 T
51329445 GAACAAGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.20
Consensus pattern (12 bp):
TAAATAAAGAAA
Found at i:51329748 original size:20 final size:22
Alignment explanation
Indices: 51329697--51329748 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
51329687 TTTGAATAAT
*
51329697 AATAATACATGGTAAATTTATAC
1 AATAATA-ATGATAAATTTATAC
* *
51329720 AATATTAATGATAGATTTA-A-
1 AATAATAATGATAAATTTATAC
51329740 AATAATAAT
1 AATAATAAT
51329749 ATATTATAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 8 0.32
21 1 0.04
22 10 0.40
23 6 0.24
ACGTcount: A:0.52, C:0.04, G:0.08, T:0.37
Consensus pattern (22 bp):
AATAATAATGATAAATTTATAC
Found at i:51333894 original size:39 final size:40
Alignment explanation
Indices: 51333815--51333907 Score: 118
Period size: 39 Copynumber: 2.3 Consensus size: 40
51333805 ACATTAAAAA
* *
51333815 GTATTATATTAAAAAACATTACCATAAATATAATACATATT
1 GTATTATATT-AAAAACATTACAATAAATATAATAAATATT
*
51333856 TTATTATATTAAAAA-A-TACAAATAAATATAATAAATATT
1 GTATTATATTAAAAACATTAC-AATAAATATAATAAATATT
*
51333895 GTATTGTATTAAA
1 GTATTATATTAAA
51333908 TATAATTTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
38 3 0.07
39 29 0.63
40 5 0.11
41 9 0.20
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (40 bp):
GTATTATATTAAAAACATTACAATAAATATAATAAATATT
Found at i:51347301 original size:23 final size:20
Alignment explanation
Indices: 51347259--51347311 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 20
51347249 TATTGTTATT
51347259 TTATTATTATTAAACTAATTA
1 TTATTATTATTAAAC-AATTA
51347280 GGTTATTATTATTACTAA-AATTA
1 --TTATTATTATTA--AACAATTA
51347303 TTATTATTA
1 TTATTATTA
51347312 GTATTAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
21 9 0.32
23 17 0.61
25 2 0.07
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.53
Consensus pattern (20 bp):
TTATTATTATTAAACAATTA
Found at i:51347361 original size:3 final size:3
Alignment explanation
Indices: 51347282--51347345 Score: 65
Period size: 3 Copynumber: 21.3 Consensus size: 3
51347272 ACTAATTAGG
* ** * *
51347282 TTA TTA TTA TTA CTA AAA TTA TTA TTA TTA GTA TTA ATA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
51347330 ATA TTA TTG TTA TTA T
1 TTA TTA TTA TTA TTA T
51347346 CATCATAACT
Statistics
Matches: 48, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:51347500 original size:18 final size:18
Alignment explanation
Indices: 51347469--51347503 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
51347459 ATATATACGC
* *
51347469 TTATATTTTTTATATATT
1 TTATAATTTATATATATT
51347487 TTATAATTTATATATAT
1 TTATAATTTATATATAT
51347504 GTATGTATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
TTATAATTTATATATATT
Found at i:51353109 original size:25 final size:26
Alignment explanation
Indices: 51353037--51353112 Score: 77
Period size: 25 Copynumber: 3.0 Consensus size: 26
51353027 TTTTTATAAA
51353037 TTTTTATTTTAAGCACTTAA-ATTTC
1 TTTTTATTTTAAGCACTTAATATTTC
* * * **
51353062 TTATCATTTTAGGCAC-TCCTATTT-
1 TTTTTATTTTAAGCACTTAATATTTC
*
51353086 TTTTTATTTTAATCACTTAATATTTC
1 TTTTTATTTTAAGCACTTAATATTTC
51353112 T
1 T
51353113 ATTAACAAAA
Statistics
Matches: 37, Mismatches: 11, Indels: 5
0.70 0.21 0.09
Matches are distributed among these distances:
24 13 0.35
25 23 0.62
26 1 0.03
ACGTcount: A:0.25, C:0.14, G:0.04, T:0.57
Consensus pattern (26 bp):
TTTTTATTTTAAGCACTTAATATTTC
Found at i:51353819 original size:31 final size:29
Alignment explanation
Indices: 51353754--51353819 Score: 73
Period size: 28 Copynumber: 2.2 Consensus size: 29
51353744 GTTAGTGATT
51353754 TAATATAAATATATAATTATTATTTAACA
1 TAATATAAATATATAATTATTATTTAACA
* *
51353783 T-ATATAATTAATATAA-TATTTTTTAGAACA
1 TAATATAAAT-ATATAATTATTATTT--AACA
51353813 TAATATA
1 TAATATA
51353820 TTTAGGCCGG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
28 14 0.45
29 7 0.23
30 5 0.16
31 5 0.16
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (29 bp):
TAATATAAATATATAATTATTATTTAACA
Found at i:51356345 original size:18 final size:18
Alignment explanation
Indices: 51356324--51356366 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
51356314 TACACCGCCC
* *
51356324 TCTCGATCGCCACCTCCA
1 TCTCCATCGACACCTCCA
*
51356342 TCTCCCTCGACACCTCCA
1 TCTCCATCGACACCTCCA
51356360 TCTCCAT
1 TCTCCAT
51356367 GCTCATGCGC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.16, C:0.51, G:0.07, T:0.26
Consensus pattern (18 bp):
TCTCCATCGACACCTCCA
Found at i:51359614 original size:19 final size:19
Alignment explanation
Indices: 51359592--51359640 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
51359582 ATATATTAGT
*
51359592 TATATTTTAATATTTAAAA
1 TATATTTTAATATTCAAAA
* *
51359611 TATAGTTTATATATTCAAAT
1 TATATTTTA-ATATTCAAAA
*
51359631 TAAATTTTAA
1 TATATTTTAA
51359641 AAATATTTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (19 bp):
TATATTTTAATATTCAAAA
Found at i:51359638 original size:39 final size:39
Alignment explanation
Indices: 51359565--51359640 Score: 93
Period size: 39 Copynumber: 1.9 Consensus size: 39
51359555 TGAAATTTAT
* *
51359565 TTTAAATATATAATATTATATATTAGTTATATTTTAATA
1 TTTAAATATATAATATTATATATTAATTAAATTTTAATA
*
51359604 TTTAAA-ATATAGT-TTATATATTCAAATTAAATTTTAA
1 TTTAAATATATAATATTATATATT--AATTAAATTTTAA
51359641 AAATATTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
37 9 0.28
38 6 0.19
39 17 0.53
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (39 bp):
TTTAAATATATAATATTATATATTAATTAAATTTTAATA
Found at i:51362358 original size:15 final size:15
Alignment explanation
Indices: 51362338--51362367 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
51362328 GTTTCCATGG
51362338 AAAGGGAATTTAATT
1 AAAGGGAATTTAATT
*
51362353 AAAGGGACTTTAATT
1 AAAGGGAATTTAATT
51362368 TGTGTGGTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.03, G:0.20, T:0.33
Consensus pattern (15 bp):
AAAGGGAATTTAATT
Found at i:51364791 original size:3 final size:3
Alignment explanation
Indices: 51364783--51364807 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
51364773 GATATTTATA
51364783 ATG ATG ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG A
51364808 CGTGAACTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32
Consensus pattern (3 bp):
ATG
Found at i:51375123 original size:25 final size:25
Alignment explanation
Indices: 51375103--51375151 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
51375093 ATGCTCTCGT
51375103 GAGCTATGAATTGGTAAGCTCATAC
1 GAGCTATGAATTGGTAAGCTCATAC
51375128 GAGCTGA-GAATTGGTAAGCTCATA
1 GAGCT-ATGAATTGGTAAGCTCATA
51375152 AGAGATGTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 22 0.96
26 1 0.04
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.27
Consensus pattern (25 bp):
GAGCTATGAATTGGTAAGCTCATAC
Found at i:51387698 original size:67 final size:67
Alignment explanation
Indices: 51387530--51387929 Score: 407
Period size: 67 Copynumber: 6.0 Consensus size: 67
51387520 ATGGACTATA
* * * * * * **
51387530 ATGGGGTATAATTTGTAAAACCATAGCTCGGCTATGGAAACATAGAGAGTCCGCCAAAACATTAA
1 ATGGGGTATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTTCGTCAGGACATTAA
*
51387595 GC
66 AC
* * *
51387597 AT-GGGTATAATGTTTAAGACCATAACTTGACTATGGCAACATAGAGAGTTCGTCAGGACATTAA
1 ATGGGGTATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTTCGTCAGGACATTAA
*
51387661 GC
66 AC
* * ** * **
51387663 ATGTGGTATAATGTGTAAGACCATAGCTCAACTATGAAAACATAGAGAGTACACCAGGACATTAA
1 ATGGGGTATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTTCGTCAGGACATTAA
51387728 AC
66 AC
* * *
51387730 ATGGGGTATAATGTGTAAGACCATAG-TGCAACTATGGCAACATAAAGAGTCCGTCAGGACATTA
1 ATGGGGTATAATGTGTAAGACCATAGCT-CGACTATGGCAACATAGAGAGTTCGTCAGGACATTA
51387794 AAC
65 AAC
* * * * *
51387797 ATGGGGTATAACGTGTAAGACTATAGCTCGGCTATGGCAACCT-GAAGAG-TC-TGCTAGGAAAT
1 ATGGGGTATAATGTGTAAGACCATAGCTCGACTATGGCAACATAG-AGAGTTCGT-C-AGGACAT
51387859 TAAAC
63 TAAAC
* * * * * * *
51387864 ATGGGGTAT-GTGTGTAAGACCTTGGCTCGGCTATGACAACATAGAGAGTTTGTCATGACATTAA
1 ATGGGGTATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTTCGTCAGGACATTAA
51387928 AC
66 AC
51387930 GCTGGGTAGT
Statistics
Matches: 277, Mismatches: 47, Indels: 19
0.81 0.14 0.06
Matches are distributed among these distances:
65 1 0.00
66 98 0.35
67 176 0.64
68 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.24
Consensus pattern (67 bp):
ATGGGGTATAATGTGTAAGACCATAGCTCGACTATGGCAACATAGAGAGTTCGTCAGGACATTAA
AC
Found at i:51387929 original size:200 final size:200
Alignment explanation
Indices: 51387530--51387912 Score: 452
Period size: 200 Copynumber: 1.9 Consensus size: 200
51387520 ATGGACTATA
* ** *
51387530 ATGGGGTATAATTTGTAAAACCATAGCTCGGCTATGGAAACATAGAGAGTCCGCCAAAACATTAA
1 ATGGGGTATAATGTGTAAAACCATAGCTCAACTATGGAAACATAAAGAGTCCGCCAAAACATTAA
* * * * *
51387595 GCATGGGTATAATGTTTAAGACCATAACTTGACTATGGCAACATAGAGAGTTCGTCAGGACATTA
66 ACATGGGTATAACGTGTAAGACCATAACTCGACTATGGCAACATAGAGAGTTCGTCAGGAAATTA
* *
51387660 AGCATGTGGTATAATGTGTAAGACCATAGCTCAACTATGAAAACATAGAGAGTACACCAGGACAT
131 AACATGGGGTATAATGTGTAAGACCATAGCTCAACTATGAAAACATAGAGAGTACACCAGGACAT
51387725 TAAAC
196 TAAAC
* * * **
51387730 ATGGGGTATAATGTGTAAGACCATAG-TGCAACTATGGCAACATAAAGAGTCCGTCAGGACATTA
1 ATGGGGTATAATGTGTAAAACCATAGCT-CAACTATGGAAACATAAAGAGTCCGCCAAAACATTA
* * * *
51387794 AACATGGGGTATAACGTGTAAGACTATAGCTCGGCTATGGCAACCT-GAAGAG-TC-TGCTAGGA
65 AACAT-GGGTATAACGTGTAAGACCATAACTCGACTATGGCAACATAG-AGAGTTCGT-C-AGGA
* * * ** *
51387856 AATTAAACATGGGGTAT-GTGTGTAAGACCTTGGCTCGGCTATGACAACATAGAGAGT
126 AATTAAACATGGGGTATAATGTGTAAGACCATAGCTCAACTATGAAAACATAGAGAGT
51387913 TTGTCATGAC
Statistics
Matches: 152, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
199 2 0.01
200 95 0.62
201 55 0.36
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (200 bp):
ATGGGGTATAATGTGTAAAACCATAGCTCAACTATGGAAACATAAAGAGTCCGCCAAAACATTAA
ACATGGGTATAACGTGTAAGACCATAACTCGACTATGGCAACATAGAGAGTTCGTCAGGAAATTA
AACATGGGGTATAATGTGTAAGACCATAGCTCAACTATGAAAACATAGAGAGTACACCAGGACAT
TAAAC
Found at i:51387950 original size:27 final size:27
Alignment explanation
Indices: 51387920--51387992 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 27
51387910 AGTTTGTCAT
*
51387920 GACATTAAACGCTGGGTAGTTCGTCGA
1 GACATTAAATGCTGGGTAGTTCGTCGA
* * * * *
51387947 GACATTAAATGCTAGGTATTTTGTTGG
1 GACATTAAATGCTGGGTAGTTCGTCGA
*
51387974 GACATTAAATGCGGGGTAG
1 GACATTAAATGCTGGGTAG
51387993 CCCGCCGAGA
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.27, C:0.12, G:0.30, T:0.30
Consensus pattern (27 bp):
GACATTAAATGCTGGGTAGTTCGTCGA
Found at i:51390460 original size:13 final size:13
Alignment explanation
Indices: 51390442--51390467 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51390432 AATTGATACC
51390442 AATATAAAATTTT
1 AATATAAAATTTT
51390455 AATATAAAATTTT
1 AATATAAAATTTT
51390468 TTGGCGTCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AATATAAAATTTT
Found at i:51391153 original size:17 final size:17
Alignment explanation
Indices: 51391131--51391170 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
51391121 AAAGAGGAAA
51391131 GATAGGATGAACAAAA-T
1 GATAGGATGAA-AAAAGT
51391148 GATAGGA-GAAAAAAGT
1 GATAGGATGAAAAAAGT
51391164 GA-AGGAT
1 GATAGGAT
51391171 AATAGGTGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 8 0.38
16 6 0.29
17 7 0.33
ACGTcount: A:0.53, C:0.03, G:0.30, T:0.15
Consensus pattern (17 bp):
GATAGGATGAAAAAAGT
Found at i:51395363 original size:22 final size:24
Alignment explanation
Indices: 51395329--51395381 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 24
51395319 GGAATTAAAA
51395329 AAAATAAGAAAAA-AT-AG-ATAAT
1 AAAATAAGAAAAACATAAGCAT-AT
51395351 AAAATAA-ATAAAACATAAGCATAT
1 AAAATAAGA-AAAACATAAGCATAT
51395375 AAAATAA
1 AAAATAA
51395382 TAATTTACCT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
21 1 0.04
22 11 0.41
23 2 0.07
24 11 0.41
25 2 0.07
ACGTcount: A:0.72, C:0.04, G:0.06, T:0.19
Consensus pattern (24 bp):
AAAATAAGAAAAACATAAGCATAT
Found at i:51395778 original size:3 final size:3
Alignment explanation
Indices: 51395770--51395799 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
51395760 AAATTTTTGC
51395770 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
51395800 AGATAAGTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:51397578 original size:15 final size:15
Alignment explanation
Indices: 51397558--51397591 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
51397548 ATCAATTTTA
51397558 TTTTTATCTTATTAT
1 TTTTTATCTTATTAT
* *
51397573 TTTTTATTTTTTTAT
1 TTTTTATCTTATTAT
51397588 TTTT
1 TTTT
51397592 CTCTCTTCCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTTATCTTATTAT
Found at i:51399514 original size:15 final size:15
Alignment explanation
Indices: 51399484--51399544 Score: 59
Period size: 15 Copynumber: 4.1 Consensus size: 15
51399474 TAACTTAAAC
* *
51399484 TCAATATTTAAATTT
1 TCAATACTTAATTTT
51399499 TCAATACTTAATTTT
1 TCAATACTTAATTTT
* * *
51399514 TTAATGCTTATTTTT
1 TCAATACTTAATTTT
**
51399529 TCAGCACTTAATTTT
1 TCAATACTTAATTTT
51399544 T
1 T
51399545 TAGTTCATCA
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.30, C:0.11, G:0.03, T:0.56
Consensus pattern (15 bp):
TCAATACTTAATTTT
Found at i:51407830 original size:44 final size:43
Alignment explanation
Indices: 51407772--51407860 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 43
51407762 GTTGAAATAA
* * *
51407772 AATAGAAGATTGATAATTATACATTTAGAAATAATTATAATTT
1 AATAGAAGATTGATAATTACACATTTAAAAATAATTAAAATTT
*
51407815 AATAGAAGTTGTGATAATTACACATTTAAAAATAATTAAAATTT
1 AATAGAAGAT-TGATAATTACACATTTAAAAATAATTAAAATTT
51407859 AA
1 AA
51407861 GTTACAATTG
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
43 9 0.22
44 32 0.78
ACGTcount: A:0.51, C:0.03, G:0.09, T:0.37
Consensus pattern (43 bp):
AATAGAAGATTGATAATTACACATTTAAAAATAATTAAAATTT
Found at i:51417640 original size:43 final size:42
Alignment explanation
Indices: 51417592--51417739 Score: 163
Period size: 43 Copynumber: 3.5 Consensus size: 42
51417582 CGGCGCTTCG
51417592 ACCACAAACGCCACTAAAGAACCTAATCTTTAGCGGCGTTTT
1 ACCACAAACGCCACTAAAGAACCTAATCTTTAGCGGCGTTTT
* * * *
51417634 CCCCACAAACGCCGCTAAAG-ACCATGATCTTTAGTGGCGCTTTT
1 -ACCACAAACGCCACTAAAGAACC-TAATCTTTAGCGGCG-TTTT
* * * * *
51417678 TCCACAAACGCCGCTAAAGACCCTTATCTTTAGCGGCGCTTTG
1 ACCACAAACGCCACTAAAGAACCTAATCTTTAGCGGCG-TTTT
*
51417721 ACCAAAAACGCCACTAAAG
1 ACCACAAACGCCACTAAAG
51417740 GCCAACGCCT
Statistics
Matches: 90, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
42 3 0.03
43 81 0.90
44 6 0.07
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.22
Consensus pattern (42 bp):
ACCACAAACGCCACTAAAGAACCTAATCTTTAGCGGCGTTTT
Found at i:51417752 original size:86 final size:86
Alignment explanation
Indices: 51417593--51417782 Score: 211
Period size: 86 Copynumber: 2.2 Consensus size: 86
51417583 GGCGCTTCGA
* * * *
51417593 CCACAAACGCCACTAAAGAACCTAATCTTTAGCGGCGTTTTCCCCACAAACGCCGCTAAAGACCA
1 CCACAAACGCCACTAAAGAACCTAATCTTTAGCGGCGCTTTCACCAAAAACGCCACTAAAGACCA
* * *
51417658 TGATCTTTAGTGGCGCTTTTT
66 CGACCTTTAGTGACGCTTTTT
* * * * *
51417679 CCACAAACGCCGCTAAAGACCCTTATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGGCCA
1 CCACAAACGCCACTAAAGAACCTAATCTTTAGCGGCGCTTTCACCAAAAACGCCACTAAAGACC-
*
51417744 ACG-CCTTTAGTGACGTTTTTTT
65 ACGACCTTTAGTGACG-CTTTTT
** *
51417766 AAAAAAACGCCACTAAA
1 CCACAAACGCCACTAAA
51417783 TTTGGCAGAT
Statistics
Matches: 85, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
86 65 0.76
87 20 0.24
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (86 bp):
CCACAAACGCCACTAAAGAACCTAATCTTTAGCGGCGCTTTCACCAAAAACGCCACTAAAGACCA
CGACCTTTAGTGACGCTTTTT
Found at i:51418116 original size:21 final size:21
Alignment explanation
Indices: 51418090--51418182 Score: 114
Period size: 21 Copynumber: 4.4 Consensus size: 21
51418080 TTTGACGCTG
*
51418090 CTCTGCTTCCCTCGCTGCAGT
1 CTCTGCTTCCCTCGCTGCAGC
**
51418111 CTCTGCTTCCCTCGCTTTAGC
1 CTCTGCTTCCCTCGCTGCAGC
51418132 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* * * * *
51418153 CTGTACTTCTCACGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
51418174 CTCTGCTTC
1 CTCTGCTTC
51418183 TCTTGTTGCC
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 60 1.00
ACGTcount: A:0.05, C:0.44, G:0.17, T:0.33
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:51418183 original size:21 final size:21
Alignment explanation
Indices: 51418090--51418202 Score: 91
Period size: 21 Copynumber: 5.4 Consensus size: 21
51418080 TTTGACGCTG
* * *
51418090 CTCTGCTTCCCTCGCTGCAGT
1 CTCTGCTTCTCTCGCTGCCGC
* ***
51418111 CTCTGCTTCCCTCGCTTTAGC
1 CTCTGCTTCTCTCGCTGCCGC
* *
51418132 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCTCTCGCTGCCGC
* * *
51418153 CTGTACTTCTCACGCTGCCGC
1 CTCTGCTTCTCTCGCTGCCGC
* *
51418174 CTCTGCTTCTCTTGTTGCCGC
1 CTCTGCTTCTCTCGCTGCCGC
*
51418195 ATCTGCTT
1 CTCTGCTT
51418203 TAAGCTGCTG
Statistics
Matches: 76, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 76 1.00
ACGTcount: A:0.05, C:0.42, G:0.18, T:0.35
Consensus pattern (21 bp):
CTCTGCTTCTCTCGCTGCCGC
Found at i:51418250 original size:66 final size:66
Alignment explanation
Indices: 51418173--51418319 Score: 181
Period size: 66 Copynumber: 2.2 Consensus size: 66
51418163 CACGCTGCCG
* * *
51418173 CCTCTGCTTCTCTTGTTGCCGCATCTGCTTTAAGCTGCT-GCTGGAGTTCTTCATA-CTTTCGTT
1 CCTCAGCTTCTCTCGCTGCCGCATCTGCTTTAAGCTG-TAGCTGGAGTTCTTCATATCTTT-GTT
51418236 GAA
64 GAA
** * * *
51418239 CCTCAGCTTCTCTCGCTGTTGCATCTGCTTTCAGTTGTAGCTGGAGTTCTTCATATCTTTTTTGA
1 CCTCAGCTTCTCTCGCTGCCGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTGTTGA
51418304 A
66 A
*
51418305 CCTCAGTTTCTCTCG
1 CCTCAGCTTCTCTCG
51418320 ATGTTGCCTC
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
65 1 0.01
66 65 0.93
67 4 0.06
ACGTcount: A:0.12, C:0.27, G:0.18, T:0.42
Consensus pattern (66 bp):
CCTCAGCTTCTCTCGCTGCCGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTGTTGA
A
Found at i:51418325 original size:66 final size:65
Alignment explanation
Indices: 51418193--51418343 Score: 205
Period size: 66 Copynumber: 2.3 Consensus size: 65
51418183 TCTTGTTGCC
* *
51418193 GCATCTGCTTTAAGCTGCTGCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGCTGT
1 GCATCTGCTTTAAGTTG-TGCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGATGT
51418258 T
65 T
* * *
51418259 GCATCTGCTTTCAGTTGTAGCTGGAGTTCTTCATATCTTT-TTTGAACCTCAGTTTCTCTCGATG
1 GCATCTGCTTTAAGTTGT-GCTGGAGTTCTTCATA-CTTTCGTTGAACCTCAGCTTCTCTCGATG
51418323 TT
64 TT
* *
51418325 GCCTCCGCTTTAAGTTGTG
1 GCATCTGCTTTAAGTTGTG
51418344 TAATTTGCTC
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
65 2 0.03
66 69 0.92
67 4 0.05
ACGTcount: A:0.14, C:0.25, G:0.20, T:0.42
Consensus pattern (65 bp):
GCATCTGCTTTAAGTTGTGCTGGAGTTCTTCATACTTTCGTTGAACCTCAGCTTCTCTCGATGTT
Found at i:51423836 original size:25 final size:25
Alignment explanation
Indices: 51423784--51423840 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
51423774 AGTATTTCCT
* *
51423784 AATTATGTAAGTTATTTATTACCCA
1 AATTATGTAAGTTATGTATTACCAA
* **
51423809 AATTATGTAAGTTGTGTATTATGAA
1 AATTATGTAAGTTATGTATTACCAA
51423834 AATTATG
1 AATTATG
51423841 CTATGTAAGT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.37, C:0.05, G:0.14, T:0.44
Consensus pattern (25 bp):
AATTATGTAAGTTATGTATTACCAA
Found at i:51423854 original size:9 final size:9
Alignment explanation
Indices: 51423842--51423925 Score: 50
Period size: 9 Copynumber: 9.8 Consensus size: 9
51423832 AAAATTATGC
51423842 TATGTAAGT
1 TATGTAAGT
51423851 TATGTAAGT
1 TATGTAAGT
* **
51423860 CACATAAGT
1 TATGTAAGT
51423869 TATGTAAG-
1 TATGTAAGT
* * *
51423877 -AAGTTATT
1 TATGTAAGT
51423885 TATGTAAGT
1 TATGTAAGT
*
51423894 TAT-TTA-T
1 TATGTAAGT
* *
51423901 TATGAAAAT
1 TATGTAAGT
*
51423910 TAAGTAAGT
1 TATGTAAGT
51423919 TATGTAA
1 TATGTAA
51423926 TTTACGAATA
Statistics
Matches: 52, Mismatches: 19, Indels: 8
0.66 0.24 0.10
Matches are distributed among these distances:
7 8 0.15
8 3 0.06
9 41 0.79
ACGTcount: A:0.39, C:0.02, G:0.17, T:0.42
Consensus pattern (9 bp):
TATGTAAGT
Found at i:51423960 original size:9 final size:9
Alignment explanation
Indices: 51423946--51423984 Score: 64
Period size: 9 Copynumber: 4.6 Consensus size: 9
51423936 ATTAAAAAAA
51423946 ATGTAAGTT
1 ATGTAAGTT
51423955 ATGTAAG-T
1 ATGTAAGTT
51423963 -TGTAAGTT
1 ATGTAAGTT
51423971 ATGTAAGTT
1 ATGTAAGTT
51423980 ATGTA
1 ATGTA
51423985 TAATATTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 6 0.21
8 2 0.07
9 20 0.71
ACGTcount: A:0.33, C:0.00, G:0.23, T:0.44
Consensus pattern (9 bp):
ATGTAAGTT
Found at i:51423968 original size:16 final size:16
Alignment explanation
Indices: 51423947--51423979 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
51423937 TTAAAAAAAA
51423947 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
51423963 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
51423979 T
1 T
51423980 ATGTATAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.45
Consensus pattern (16 bp):
TGTAAGTTATGTAAGT
Found at i:51424022 original size:85 final size:85
Alignment explanation
Indices: 51423864--51424022 Score: 203
Period size: 85 Copynumber: 1.9 Consensus size: 85
51423854 GTAAGTCACA
* * * * * *
51423864 TAAGTTATGTAAGAAGTTATTTATGTAAGTTATTTATTATGAAAATTAAGTAAGTTATGTAATTT
1 TAAGTTATGTAAGAAGTAAGTTATGTAAGTTATGTATAATGAAAATTAACTAACTTATGTAATTT
*
51423929 ACGAATAATTAAAAAAAATG
66 AAGAATAATTAAAAAAAATG
** *
51423949 TAAGTTATGTAAGTTGTAAGTTATGTAAGTTATGTATAAT-ATTAATTAACTAACTTATGTAATT
1 TAAGTTATGTAAGAAGTAAGTTATGTAAGTTATGTATAATGA-AAATTAACTAACTTATGTAATT
*
51424013 TAAGTATAAT
65 TAAGAATAAT
51424023 ATTAATGTAA
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
84 1 0.02
85 61 0.98
ACGTcount: A:0.42, C:0.02, G:0.14, T:0.42
Consensus pattern (85 bp):
TAAGTTATGTAAGAAGTAAGTTATGTAAGTTATGTATAATGAAAATTAACTAACTTATGTAATTT
AAGAATAATTAAAAAAAATG
Found at i:51424030 original size:22 final size:22
Alignment explanation
Indices: 51424005--51424050 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
51423995 TAACTAACTT
* *
51424005 ATGTAATTTAAGTATAATATTA
1 ATGTAAGTTAAGTATAAAATTA
*
51424027 ATGTAAGTTATGTATAAAATTA
1 ATGTAAGTTAAGTATAAAATTA
51424049 AT
1 AT
51424051 TAACTAACTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (22 bp):
ATGTAAGTTAAGTATAAAATTA
Found at i:51424038 original size:56 final size:56
Alignment explanation
Indices: 51423971--51424093 Score: 237
Period size: 56 Copynumber: 2.2 Consensus size: 56
51423961 GTTGTAAGTT
*
51423971 ATGTAAGTTATGTATAATATTAATTAACTAACTTATGTAATTTAAGTATAATATTA
1 ATGTAAGTTATGTATAAAATTAATTAACTAACTTATGTAATTTAAGTATAATATTA
51424027 ATGTAAGTTATGTATAAAATTAATTAACTAACTTATGTAATTTAAGTATAATATTA
1 ATGTAAGTTATGTATAAAATTAATTAACTAACTTATGTAATTTAAGTATAATATTA
51424083 ATGTAAGTTAT
1 ATGTAAGTTAT
51424094 ATAAGTTGTA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 66 1.00
ACGTcount: A:0.43, C:0.03, G:0.10, T:0.44
Consensus pattern (56 bp):
ATGTAAGTTATGTATAAAATTAATTAACTAACTTATGTAATTTAAGTATAATATTA
Found at i:51424167 original size:22 final size:21
Alignment explanation
Indices: 51424142--51424193 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
51424132 TAACTAACTT
51424142 ATGTAATTTAAGTATAATATTA
1 ATGTAATTTAAGTATAATA-TA
* *
51424164 ATGTAAGTTATGTATAATATA
1 ATGTAATTTAAGTATAATATA
51424185 AGTGTAATT
1 A-TGTAATT
51424194 AGTTATGTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 3 0.12
22 23 0.88
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.44
Consensus pattern (21 bp):
ATGTAATTTAAGTATAATATA
Found at i:51424187 original size:81 final size:81
Alignment explanation
Indices: 51424026--51424240 Score: 285
Period size: 81 Copynumber: 2.6 Consensus size: 81
51424016 GTATAATATT
*
51424026 AATGTAAGTTATGTATAAAATTAATTAACTAACTTATGTAATTTAAGTATAATATTAATGTAAGT
1 AATGTAAGTTATGTATAATATTAATTAACTAACTTATGTAATTTAAGTATAATATTAATGTAAGT
*
51424091 TATATAAGTTGTAAGTG
66 TATATAAG-TATAAGTG
51424108 -ATGTAAGTTATGTATAATATTAATTAACTAACTTATGTAATTTAAGTATAATATTAATGTAAGT
1 AATGTAAGTTATGTATAATATTAATTAACTAACTTATGTAATTTAAGTATAATATTAATGTAAGT
51424172 TATGTATAA-TATAAGTG
66 TA--TATAAGTATAAGTG
*
51424189 TAAT-T-AGTTATGTAATTTATGTATTTTAATTAACTAACTTATGTAATTTAAG
1 -AATGTAAGTTATGT-A--TA---ATATTAATTAACTAACTTATGTAATTTAAG
51424241 AATTATTTTA
Statistics
Matches: 120, Mismatches: 3, Indels: 15
0.87 0.02 0.11
Matches are distributed among these distances:
81 80 0.67
82 2 0.02
83 7 0.06
84 2 0.02
87 29 0.24
ACGTcount: A:0.41, C:0.03, G:0.12, T:0.44
Consensus pattern (81 bp):
AATGTAAGTTATGTATAATATTAATTAACTAACTTATGTAATTTAAGTATAATATTAATGTAAGT
TATATAAGTATAAGTG
Found at i:51424231 original size:56 final size:54
Alignment explanation
Indices: 51423969--51424233 Score: 166
Period size: 56 Copynumber: 4.7 Consensus size: 54
51423959 AAGTTGTAAG
*
51423969 TTATGTAAGTTATGTATAATATTAATTAACTAACTTATG--TAATTTAAGTATAATA
1 TTATGTAAGTTATGTAT--T-TTAATTAACTAACTTATGTATAATATAAGTATAATA
* *
51424024 TTAATGTAAGTTATGTATAAAATTAATTAACTAACTTATG--TAATTTAAGTATAATA
1 TT-ATGTAAGTTATGTAT---TTTAATTAACTAACTTATGTATAATATAAGTATAATA
* * * ** *
51424080 TTAATGTAAGTTATATAAGTTGTAAGTGATGTAAGTTATGTATAATATTAA-T-TAACTAA
1 TT-ATGTAAGTTATGT-A-TTTTAA-TTAACTAACTTATGTATAATA-TAAGTATAA-T-A
* * ** * * *
51424139 CTTATGTAATTTAAGTATAAT-ATTAATGTAAGTTATGTATAATATAAGTGTAATTA
1 -TTATGTAAGTTATGTATTTTAATTAA-CTAACTTATGTATAATATAAGTATAA-TA
*
51424195 GTTATGTAATTTATGTATTTTAATTAACTAACTTATGTA
1 -TTATGTAAGTTATGTATTTTAATTAACTAACTTATGTA
51424234 ATTTAAGAAT
Statistics
Matches: 172, Mismatches: 23, Indels: 29
0.77 0.10 0.13
Matches are distributed among these distances:
55 10 0.06
56 121 0.70
57 17 0.10
58 8 0.05
59 14 0.08
60 2 0.01
ACGTcount: A:0.41, C:0.03, G:0.11, T:0.45
Consensus pattern (54 bp):
TTATGTAAGTTATGTATTTTAATTAACTAACTTATGTATAATATAAGTATAATA
Found at i:51425926 original size:20 final size:20
Alignment explanation
Indices: 51425900--51425944 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
51425890 ACATTATTAG
51425900 TTTTTTTATTTCCTTT-TTATA
1 TTTTTTTATTT--TTTCTTATA
51425921 TTTTTTTATTTTTTCTTATA
1 TTTTTTTATTTTTTCTTATA
51425941 TTTT
1 TTTT
51425945 GGTCCAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 3 0.13
20 9 0.39
21 11 0.48
ACGTcount: A:0.13, C:0.07, G:0.00, T:0.80
Consensus pattern (20 bp):
TTTTTTTATTTTTTCTTATA
Found at i:51426294 original size:18 final size:18
Alignment explanation
Indices: 51426253--51426291 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
51426243 ATAAAACTAA
51426253 TTAATCTGAGCTTAAACC
1 TTAATCTGAGCTTAAACC
*
51426271 TTAATCTGATC-TAAACC
1 TTAATCTGAGCTTAAACC
51426288 TTAA
1 TTAA
51426292 ATCACTAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.36
Consensus pattern (18 bp):
TTAATCTGAGCTTAAACC
Found at i:51426518 original size:91 final size:89
Alignment explanation
Indices: 51426326--51426667 Score: 555
Period size: 91 Copynumber: 3.8 Consensus size: 89
51426316 TCAAACCTCA
*
51426326 AACCCCTAAA-CCCTAAACATTATTTAATATATAAATTAAAAAACACTAATT-ATCTGAATCCTA
1 AACCCC-AAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAATCCTA
*
51426389 AACCCTAACTC-AACCCGAATCACT
65 AACCCTAACTCGACCCCGAATCACT
*
51426413 AACCCTAAACCCCTAAACATTATTTAATATATATAAATTAAAAAACACTAATTAATCTAAATCCT
1 AACCCCAAACCCCTAAACATTATTT-A-ATATATAAATTAAAAAACACTAATTAATCTAAATCCT
*
51426478 AAACCCTAACTCGACCCCAAATCACT
64 AAACCCTAACTCGACCCCGAATCACT
* *
51426504 AACCCCAAACCCCTAAACATTATTTAATATATATAAATTAAAAAATACTAATTAATCTAAATCAT
1 AACCCCAAACCCCTAAACATTATTT-A-ATATATAAATTAAAAAACACTAATTAATCTAAATCCT
51426569 AAACCCTAACTCGACCCCGAATCACT
64 AAACCCTAACTCGACCCCGAATCACT
*
51426595 AACCCCTAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAATCCTAA
1 AACCCCAAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAATCCTAA
51426660 ACCCTAAC
66 ACCCTAAC
51426668 CCTAAATCCC
Statistics
Matches: 239, Mismatches: 11, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
86 3 0.01
87 20 0.08
88 1 0.00
89 70 0.29
90 23 0.10
91 122 0.51
ACGTcount: A:0.46, C:0.26, G:0.01, T:0.27
Consensus pattern (89 bp):
AACCCCAAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAATCCTAA
ACCCTAACTCGACCCCGAATCACT
Found at i:51426637 original size:180 final size:178
Alignment explanation
Indices: 51426326--51426667 Score: 566
Period size: 180 Copynumber: 1.9 Consensus size: 178
51426316 TCAAACCTCA
* *
51426326 AACCCCTAAACCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTATCTGAATCCTAAA
1 AACCCCTAAACCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTATCTAAATCATAAA
51426391 CCCTAACTCAACCCGAATCACTAACCCTAAACCCCTAAACATTATTTAATATATATAAATTAAAA
66 CCCTAACTCAACCCGAATCACTAACCCTAAACCCCTAAACATTATTTAATATATATAAATTAAAA
51426456 AACACTAATTAATCTAAATCCTAAACCCTAACTCGACCCCAAATCACT
131 AACACTAATTAATCTAAATCCTAAACCCTAACTCGACCCCAAATCACT
*
51426504 AACCCC-AAACCCCTAAACATTATTTAATATATATAAATTAAAAAATACTAATTAATCTAAATCA
1 AACCCCTAAA-CCCTAAACATTATTT-A-ATATATAAATTAAAAAACACTAATT-ATCTAAATCA
*
51426568 TAAACCCTAACTCGACCCCGAATCACTAACCCCT-AACCCCTAAACATTATTT-A-ATATATAAA
62 TAAACCCTAACTC-AACCCGAATCACTAA-CCCTAAACCCCTAAACATTATTTAATATATATAAA
51426630 TTAAAAAACACTAATTAATCTAAATCCTAAACCCTAAC
125 TTAAAAAACACTAATTAATCTAAATCCTAAACCCTAAC
51426668 CCTAAATCCC
Statistics
Matches: 154, Mismatches: 4, Indels: 10
0.92 0.02 0.06
Matches are distributed among these distances:
177 3 0.02
178 21 0.14
179 1 0.01
180 71 0.46
181 22 0.14
182 32 0.21
183 4 0.03
ACGTcount: A:0.46, C:0.26, G:0.01, T:0.27
Consensus pattern (178 bp):
AACCCCTAAACCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTATCTAAATCATAAA
CCCTAACTCAACCCGAATCACTAACCCTAAACCCCTAAACATTATTTAATATATATAAATTAAAA
AACACTAATTAATCTAAATCCTAAACCCTAACTCGACCCCAAATCACT
Found at i:51426674 original size:20 final size:21
Alignment explanation
Indices: 51426649--51426687 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
51426639 ACTAATTAAT
51426649 CTAAAT-CCTAAACCCTAACC
1 CTAAATCCCTAAACCCTAACC
*
51426669 CTAAATCCCTAACCCCTAA
1 CTAAATCCCTAAACCCTAA
51426688 ACATTATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.38, C:0.41, G:0.00, T:0.21
Consensus pattern (21 bp):
CTAAATCCCTAAACCCTAACC
Found at i:51426816 original size:7 final size:7
Alignment explanation
Indices: 51426806--51426831 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
51426796 AATTTAACAT
51426806 CTAACCC
1 CTAACCC
51426813 CTAACCC
1 CTAACCC
51426820 CTAACCC
1 CTAACCC
51426827 CTAAC
1 CTAAC
51426832 TAATAAACCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.54, G:0.00, T:0.15
Consensus pattern (7 bp):
CTAACCC
Found at i:51427287 original size:10 final size:9
Alignment explanation
Indices: 51427263--51427288 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
51427253 AGAAACACCG
51427263 CCAAAAACC
1 CCAAAAACC
51427272 CCAAAAACC
1 CCAAAAACC
51427281 CCAAAAAC
1 CCAAAAAC
51427289 TCAGAAAACG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.42, G:0.00, T:0.00
Consensus pattern (9 bp):
CCAAAAACC
Found at i:51427801 original size:113 final size:113
Alignment explanation
Indices: 51427278--51427784 Score: 870
Period size: 113 Copynumber: 4.5 Consensus size: 113
51427268 AACCCCAAAA
* **
51427278 ACCCCAAAAACTCAGAAAACGGTGTCGTTGGGCTTAGGCTTTTTGCGATGCTTTTAAAAAAACGC
1 ACCCCAAAAACTCAGAAAACGGTGCCGTTGGGCTTAGGCTTTTTGCGGCGCTTTTAAAAAAACGC
* * *
51427343 TGCTAAACACCTGAGCATTAGCGGCGCTTTACAGAAACGCCGCTAAAG
66 TGCTAAAGACCTGAGAATTAGCGGCGCATTACAGAAACGCCGCTAAAG
* *
51427391 ACCCCAAAAACTCATAAAACGGTGCCGTTGGGCTTAGGCTTTTTTGCAGCGCTTTTAAAAAAACG
1 ACCCCAAAAACTCAGAAAACGGTGCCGTTGGGCTTAGGC-TTTTTGCGGCGCTTTTAAAAAAACG
* *
51427456 CCGCTAAAGACCTGAGAATTAGCGACGCATTACAGAAACGCCGCTAAAG
65 CTGCTAAAGACCTGAGAATTAGCGGCGCATTACAGAAACGCCGCTAAAG
*
51427505 ACCCCAAAAACTCAGAAAACGGTGCCGTTGGGTTTAGGCTTTTTGCGGCGCTTTTAAAAAAACGC
1 ACCCCAAAAACTCAGAAAACGGTGCCGTTGGGCTTAGGCTTTTTGCGGCGCTTTTAAAAAAACGC
51427570 TGCTAAAGACCTGAGAATTAGCGGCGCATTACAGAAACGCCGCTAAAG
66 TGCTAAAGACCTGAGAATTAGCGGCGCATTACAGAAACGCCGCTAAAG
* *
51427618 ACCCCAAAAACTCAGAAAACGGTGTCGTTGGGTTTAGGCTTTTTGCGGCGCTTTTAAAAAAACGC
1 ACCCCAAAAACTCAGAAAACGGTGCCGTTGGGCTTAGGCTTTTTGCGGCGCTTTTAAAAAAACGC
*
51427683 TGCTAAAGACCTGAGAATTAGCGGCGCATTACAGAAACGCCGCTAAAT
66 TGCTAAAGACCTGAGAATTAGCGGCGCATTACAGAAACGCCGCTAAAG
*
51427731 ACCCCAAAAACTCAGAAAACGGTGCCGTTTGGCTTAGGCTTTTTGCGGCGCTTT
1 ACCCCAAAAACTCAGAAAACGGTGCCGTTGGGCTTAGGCTTTTTGCGGCGCTTT
51427785 CAAATAAATG
Statistics
Matches: 373, Mismatches: 20, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
113 270 0.72
114 103 0.28
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.23
Consensus pattern (113 bp):
ACCCCAAAAACTCAGAAAACGGTGCCGTTGGGCTTAGGCTTTTTGCGGCGCTTTTAAAAAAACGC
TGCTAAAGACCTGAGAATTAGCGGCGCATTACAGAAACGCCGCTAAAG
Found at i:51427894 original size:40 final size:39
Alignment explanation
Indices: 51427770--51427904 Score: 123
Period size: 40 Copynumber: 3.4 Consensus size: 39
51427760 TGGCTTAGGC
* *
51427770 TTTTT-GCGGCGCTTTCAAATAAATGCCGCTAATGCTT-A
1 TTTTTAGCGGCGTTTTTAAA-AAATGCCGCTAATGCTTGA
* ** *
51427808 TTTTTAGCAGCGATTTTTAAAAAATGCCGCTAATAATCGA
1 TTTTTAGCGGCG-TTTTTAAAAAATGCCGCTAATGCTTGA
** *
51427848 CCTTTAGCGGCGTTTTCCTAAAAGA-GCCGCTAATGCTTGA
1 TTTTTAGCGGCGTTTT--TAAAAAATGCCGCTAATGCTTGA
*
51427888 TTTTTAGTGGCGTTTTT
1 TTTTTAGCGGCGTTTTT
51427905 TTGTCTAAAT
Statistics
Matches: 76, Mismatches: 16, Indels: 10
0.75 0.16 0.10
Matches are distributed among these distances:
38 6 0.08
39 23 0.30
40 41 0.54
41 6 0.08
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (39 bp):
TTTTTAGCGGCGTTTTTAAAAAATGCCGCTAATGCTTGA
Found at i:51428019 original size:18 final size:19
Alignment explanation
Indices: 51427998--51428039 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
51427988 AAATTAATTA
51427998 ATTTTTGGAA-ATTTTGAT-
1 ATTTTT-GAATATTTTGATG
*
51428016 ATTTTTTAATATTTTGATG
1 ATTTTTGAATATTTTGATG
51428035 ATTTT
1 ATTTT
51428040 GTGTAAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 2 0.10
18 14 0.67
19 5 0.24
ACGTcount: A:0.26, C:0.00, G:0.12, T:0.62
Consensus pattern (19 bp):
ATTTTTGAATATTTTGATG
Found at i:51437063 original size:9 final size:9
Alignment explanation
Indices: 51437062--51437106 Score: 81
Period size: 9 Copynumber: 5.0 Consensus size: 9
51437052 GAATTATTCG
*
51437062 AATCGAGTT
1 AATCGAATT
51437071 AATCGAATT
1 AATCGAATT
51437080 AATCGAATT
1 AATCGAATT
51437089 AATCGAATT
1 AATCGAATT
51437098 AATCGAATT
1 AATCGAATT
51437107 TTTTCTTTCG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.33
Consensus pattern (9 bp):
AATCGAATT
Found at i:51437165 original size:9 final size:9
Alignment explanation
Indices: 51437147--51437185 Score: 69
Period size: 9 Copynumber: 4.3 Consensus size: 9
51437137 TTGAATTTTC
51437147 TAATTCGAA
1 TAATTCGAA
*
51437156 TAACTCGAA
1 TAATTCGAA
51437165 TAATTCGAA
1 TAATTCGAA
51437174 TAATTCGAA
1 TAATTCGAA
51437183 TAA
1 TAA
51437186 AAACTATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.46, C:0.13, G:0.10, T:0.31
Consensus pattern (9 bp):
TAATTCGAA
Found at i:51437225 original size:28 final size:29
Alignment explanation
Indices: 51437190--51437244 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
51437180 GAATAAAAAC
*
51437190 TATA-TTTTTATTTTTAAAATATACTACA
1 TATATTTTTTATTTTTAAAATACACTACA
51437218 TATATTTTTTATTTTTAAAATACACTA
1 TATATTTTTTATTTTTAAAATACACTA
51437245 TATTTAAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 4 0.16
29 21 0.84
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (29 bp):
TATATTTTTTATTTTTAAAATACACTACA
Found at i:51442249 original size:5 final size:5
Alignment explanation
Indices: 51442239--51442263 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
51442229 CTCGAAAATT
51442239 TTCGA TTCGA TTCGA TTCGA TTCGA
1 TTCGA TTCGA TTCGA TTCGA TTCGA
51442264 CCGAATGCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (5 bp):
TTCGA
Found at i:51444001 original size:35 final size:35
Alignment explanation
Indices: 51443955--51444024 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
51443945 TGGAAAAACG
51443955 CAGTGGAAAATAAATTTAAAGAAAAATCAGAGTTT
1 CAGTGGAAAATAAATTTAAAGAAAAATCAGAGTTT
51443990 CAGTGGAAAATAAATTTAAAGAAAAATCAGAGTTT
1 CAGTGGAAAATAAATTTAAAGAAAAATCAGAGTTT
51444025 TAAAAATTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.51, C:0.06, G:0.17, T:0.26
Consensus pattern (35 bp):
CAGTGGAAAATAAATTTAAAGAAAAATCAGAGTTT
Found at i:51447990 original size:29 final size:28
Alignment explanation
Indices: 51447932--51447986 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
51447922 GAGCTCACAG
* *
51447932 AATAGAAGCTCGCACTAAGGCAAAGCTA
1 AATAGAACCTCGCACTAAAGCAAAGCTA
*
51447960 AATAGAGACCTCGCAC-AAAGCAGAGCT
1 AATAGA-ACCTCGCACTAAAGCAAAGCT
51447987 TAAAACATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 15 0.65
29 8 0.35
ACGTcount: A:0.42, C:0.24, G:0.22, T:0.13
Consensus pattern (28 bp):
AATAGAACCTCGCACTAAAGCAAAGCTA
Found at i:51467444 original size:210 final size:209
Alignment explanation
Indices: 51467083--51467504 Score: 799
Period size: 210 Copynumber: 2.0 Consensus size: 209
51467073 TTCATAGTTG
51467083 GATTAAGCCGGCGATGTGCATCCACTACAGGTTTTTTCCTTCTTCTAATCTAATCTTATGTTCAC
1 GATTAAGCCGGCGATGTGCATCCACTACAGGTTTTTTCCTTCTTCTAATCTAATCTTATGTTCAC
*
51467148 ATAGCACAAGATTGATTCCCTTAATATCAGTAATTATCCATCCTATGACGTTTTTGTGTGTTTTT
66 ATAGCACAAGATTGATTCCCTTAATATCAGCAATTATCCATCCTATGACGTTTTTGTGTGTTTTT
51467213 AAAACACTGAATCAAACCTCTTCTTGTTCTAAATTTATCCCGGTAGCTATAATTACTAGTAATGT
131 AAAACACTGAATCAAACCTCTTCTTGTTCTAAATTTATCCCGGTAGCTATAATTACTAGTAATGT
51467278 ATTTTGCTTCCCCA
196 ATTTTGCTTCCCCA
*
51467292 GATTAAGCCGGCGTTGTGCATCCACTACAGGTTTTTTTCCTTCTTCTAATCTAATCTTATGTTCA
1 GATTAAGCCGGCGATGTGCATCCACTACAGG-TTTTTTCCTTCTTCTAATCTAATCTTATGTTCA
*
51467357 CATAGCACAAGATTGATTCCCTTAATATCAGCAATTATCCATCCTATGACGTTTTTGTTTGTTTT
65 CATAGCACAAGATTGATTCCCTTAATATCAGCAATTATCCATCCTATGACGTTTTTGTGTGTTTT
*
51467422 TAAAACACTGACTCAAACCTCTTCTTGTTCTAAATTTATCCCGGTAGCTATAATTACTAGTAATG
130 TAAAACACTGAATCAAACCTCTTCTTGTTCTAAATTTATCCCGGTAGCTATAATTACTAGTAATG
51467487 TATTTTGCTTCCCCA
195 TATTTTGCTTCCCCA
51467502 GAT
1 GAT
51467505 ATCTGTATTT
Statistics
Matches: 208, Mismatches: 4, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
209 30 0.14
210 178 0.86
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.40
Consensus pattern (209 bp):
GATTAAGCCGGCGATGTGCATCCACTACAGGTTTTTTCCTTCTTCTAATCTAATCTTATGTTCAC
ATAGCACAAGATTGATTCCCTTAATATCAGCAATTATCCATCCTATGACGTTTTTGTGTGTTTTT
AAAACACTGAATCAAACCTCTTCTTGTTCTAAATTTATCCCGGTAGCTATAATTACTAGTAATGT
ATTTTGCTTCCCCA
Found at i:51470654 original size:42 final size:43
Alignment explanation
Indices: 51470598--51470710 Score: 140
Period size: 43 Copynumber: 2.7 Consensus size: 43
51470588 AAAATTTACG
* * * *
51470598 TGTAAGACCATGTCTGGGACATTTGCATCG-TATATGATTTCA
1 TGTAAGACCCTGTCTGGGACATTGGCATCGTTATATGAATACA
* *
51470640 TGTAAGACCCTGTCTGGGACAGTGGCATCGTTATTTGAATACA
1 TGTAAGACCCTGTCTGGGACATTGGCATCGTTATATGAATACA
*
51470683 TGTAAGACTAC-GTCTGGGACATTGGCAT
1 TGTAAGAC-CCTGTCTGGGACATTGGCAT
51470711 TGCACAAGCT
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
42 27 0.44
43 33 0.54
44 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTAAGACCCTGTCTGGGACATTGGCATCGTTATATGAATACA
Found at i:51474191 original size:64 final size:64
Alignment explanation
Indices: 51474085--51474214 Score: 161
Period size: 64 Copynumber: 2.0 Consensus size: 64
51474075 GCGAGCATCC
* * * * ** * * *
51474085 TGATCAGTATTGATCCTGCCTGTGTTGTGGATATACTGCAGCTCTTTGTGAGCGTCCTGTTATA
1 TGATCAGTATTGATCCTGCATGTATTGCGGACATACCACAGCTCTTTATGAGCGTCCCGATATA
* *
51474149 TGATCGGTATTGATCCTGCATTTATTGCGGACATACCACAGCTCTTTATGAGCGTCCCGATATA
1 TGATCAGTATTGATCCTGCATGTATTGCGGACATACCACAGCTCTTTATGAGCGTCCCGATATA
51474213 TG
1 TG
51474215 TCTCTTCGTG
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
64 55 1.00
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.36
Consensus pattern (64 bp):
TGATCAGTATTGATCCTGCATGTATTGCGGACATACCACAGCTCTTTATGAGCGTCCCGATATA
Done.