Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 204 of 221
Found at i:59976310 original size:20 final size:21
Alignment explanation
Indices: 59976278--59976326 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
59976268 CTCTTCTCTC
*
59976278 TTTCTTCTTTGCTTG-TTTTTT
1 TTTCTT-TTTGCTTGCTATTTT
59976299 TTTCTTTTTGCTTGCTATTTT
1 TTTCTTTTTGCTTGCTATTTT
59976320 TTTCTTT
1 TTTCTTT
59976327 GACTTTGCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 8 0.31
21 18 0.69
ACGTcount: A:0.02, C:0.14, G:0.08, T:0.76
Consensus pattern (21 bp):
TTTCTTTTTGCTTGCTATTTT
Found at i:59976339 original size:20 final size:18
Alignment explanation
Indices: 59976282--59976340 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 18
59976272 TCTCTCTTTC
*
59976282 TTCTTTGCTTGTTTTTTT
1 TTCTTTGCTTGCTTTTTT
59976300 TTCTTTTTGCTTGCTATTTTT
1 TTC--TTTGCTTGCT-TTTTT
59976321 TTCTTTGACTTTGCTTTTTT
1 TTCTTTG-C-TTGCTTTTTT
59976341 ATTTATTTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
18 3 0.09
19 4 0.11
20 15 0.43
21 13 0.37
ACGTcount: A:0.03, C:0.14, G:0.10, T:0.73
Consensus pattern (18 bp):
TTCTTTGCTTGCTTTTTT
Found at i:59976467 original size:10 final size:11
Alignment explanation
Indices: 59976441--59976466 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
59976431 TTGCTGCTGT
59976441 TTTTTGCTTGA
1 TTTTTGCTTGA
59976452 TTTTTGCTTGA
1 TTTTTGCTTGA
59976463 TTTT
1 TTTT
59976467 GTTGTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.08, G:0.15, T:0.69
Consensus pattern (11 bp):
TTTTTGCTTGA
Found at i:59976821 original size:29 final size:29
Alignment explanation
Indices: 59976789--59976883 Score: 111
Period size: 30 Copynumber: 3.2 Consensus size: 29
59976779 ATTGAAATAT
*
59976789 AATTTTAGAAAA-TTTTGGGTCAAAATGTA
1 AATTTT-GAAAAGTTTAGGGTCAAAATGTA
* *
59976818 AATTTCGAAAAGTATAGGGGTCAAAATGTA
1 AATTTTGAAAAGTTTA-GGGTCAAAATGTA
*
59976848 AATTTTGAAAAGTATAGGAGTCAAAATGTA
1 AATTTTGAAAAGTTTAGG-GTCAAAATGTA
*
59976878 ATTTTT
1 AATTTT
59976884 TTAATTTTTT
Statistics
Matches: 58, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
28 5 0.09
29 9 0.16
30 44 0.76
ACGTcount: A:0.42, C:0.04, G:0.19, T:0.35
Consensus pattern (29 bp):
AATTTTGAAAAGTTTAGGGTCAAAATGTA
Found at i:59976841 original size:30 final size:30
Alignment explanation
Indices: 59976805--59976878 Score: 130
Period size: 30 Copynumber: 2.5 Consensus size: 30
59976795 AGAAAATTTT
59976805 GGGTCAAAATGTAAATTTCGAAAAGTATAG
1 GGGTCAAAATGTAAATTTCGAAAAGTATAG
*
59976835 GGGTCAAAATGTAAATTTTGAAAAGTATAG
1 GGGTCAAAATGTAAATTTCGAAAAGTATAG
*
59976865 GAGTCAAAATGTAA
1 GGGTCAAAATGTAA
59976879 TTTTTTTAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.45, C:0.05, G:0.23, T:0.27
Consensus pattern (30 bp):
GGGTCAAAATGTAAATTTCGAAAAGTATAG
Found at i:59979047 original size:23 final size:24
Alignment explanation
Indices: 59979012--59979078 Score: 77
Period size: 23 Copynumber: 2.9 Consensus size: 24
59979002 TACCTTGTTT
*
59979012 GGACAGC-TCTTATACATC-AATTA
1 GGACAGCAT-TTATACACCAAATTA
*
59979035 GGACAGCATTTATATACCAAATTA
1 GGACAGCATTTATACACCAAATTA
*
59979059 -AACAGCATTTATACACCAAA
1 GGACAGCATTTATACACCAAA
59979079 ATTTAACAGC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
23 32 0.84
24 6 0.16
ACGTcount: A:0.42, C:0.21, G:0.10, T:0.27
Consensus pattern (24 bp):
GGACAGCATTTATACACCAAATTA
Found at i:59979080 original size:24 final size:23
Alignment explanation
Indices: 59979037--59979355 Score: 109
Period size: 23 Copynumber: 13.9 Consensus size: 23
59979027 ATCAATTAGG
*
59979037 ACAGCATTTATATACCAAATTAA
1 ACAGCATTTATACACCAAATTAA
*
59979060 ACAGCATTTATACACCAAAATTTA
1 ACAGCATTTATACACC-AAATTAA
* ** *
59979084 ACAGCATATATACAGTAAA-TAG
1 ACAGCATTTATACACCAAATTAA
* * * * * * *
59979106 GCAGCATATACATACCCATTTTA
1 ACAGCATTTATACACCAAATTAA
59979129 ACAGCACTTT-TACACCAAAAATT-A
1 ACAGCA-TTTATACACC--AAATTAA
* * * *
59979153 ACAGCATATATATAGCAAA-TAG
1 ACAGCATTTATACACCAAATTAA
* *
59979175 GCAGCATATTCAT--ACCAAATTTA
1 ACAGCAT-TT-ATACACCAAATTAA
*
59979198 ACAGCACTTT-TACACCAAAATTTA
1 ACAGCA-TTTATACACC-AAATTAA
* * **
59979222 ACAGCATATATACAACAAA-TGG
1 ACAGCATTTATACACCAAATTAA
* * * * *
59979244 GCAGCATATACATACCAAATTGA
1 ACAGCATTTATACACCAAATTAA
* * * *
59979267 GCAGCATTTTTACACAAAATTTA
1 ACAGCATTTATACACCAAATTAA
* * *
59979290 ACAGCATATATACAACAAA-TAG
1 ACAGCATTTATACACCAAATTAA
* * * * *
59979312 GCAGCATATACATACCAAATTGA
1 ACAGCATTTATACACCAAATTAA
*
59979335 GCAGCAATTT-TACACCAAATT
1 ACAGC-ATTTATACACCAAATT
59979356 TGAACAGTAT
Statistics
Matches: 215, Mismatches: 63, Indels: 36
0.68 0.20 0.11
Matches are distributed among these distances:
21 2 0.01
22 59 0.27
23 95 0.44
24 56 0.26
25 3 0.01
ACGTcount: A:0.45, C:0.20, G:0.09, T:0.26
Consensus pattern (23 bp):
ACAGCATTTATACACCAAATTAA
Found at i:59979121 original size:69 final size:68
Alignment explanation
Indices: 59979022--59979394 Score: 480
Period size: 69 Copynumber: 5.4 Consensus size: 68
59979012 GGACAGCTCT
* * * * *
59979022 TATACATCAATTAGGACAGCATTTATATACCAAATTAAACAGCATTTATACACCAAAATTTAACA
1 TATACAACAAATAGG-CAGCATATACATACCAAATTGAACAGCATTT-TACACCAAAATTTAACA
59979087 GCATA
64 GCATA
** * * * *
59979092 TATACAGTAAATAGGCAGCATATACATACCCATTTTAACAGCACTTTTACACCAAAAATTAACAG
1 TATACAACAAATAGGCAGCATATACATACCAAATTGAACAGCA-TTTTACACCAAAATTTAACAG
59979157 CATA
65 CATA
* * * *
59979161 TATATAGCAAATAGGCAGCATATTCATACCAAATTTAACAGCACTTTTACACCAAAATTTAACAG
1 TATACAACAAATAGGCAGCATATACATACCAAATTGAACAGCA-TTTTACACCAAAATTTAACAG
59979226 CATA
65 CATA
* *
59979230 TATACAACAAATGGGCAGCATATACATACCAAATTGAGCAGCATTTTTACA-CAAAATTTAACAG
1 TATACAACAAATAGGCAGCATATACATACCAAATTGAACAGCA-TTTTACACCAAAATTTAACAG
59979294 CATA
65 CATA
*
59979298 TATACAACAAATAGGCAGCATATACATACCAAATTGAGCAGCAATTTTACACC-AAATTTGAACA
1 TATACAACAAATAGGCAGCATATACATACCAAATTGAACAGC-ATTTTACACCAAAATTT-AACA
*
59979362 GTATA
64 GCATA
* *
59979367 TATAAAACAAATGGGCAGCATATACATA
1 TATACAACAAATAGGCAGCATATACATA
59979395 ATACATCATA
Statistics
Matches: 273, Mismatches: 26, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
68 71 0.26
69 187 0.68
70 15 0.05
ACGTcount: A:0.45, C:0.19, G:0.10, T:0.26
Consensus pattern (68 bp):
TATACAACAAATAGGCAGCATATACATACCAAATTGAACAGCATTTTACACCAAAATTTAACAGC
ATA
Found at i:59979347 original size:137 final size:138
Alignment explanation
Indices: 59979022--59979394 Score: 500
Period size: 137 Copynumber: 2.7 Consensus size: 138
59979012 GGACAGCTCT
* * * *
59979022 TATACATCAATTAGGACAGCATTTATATACCAAATTAAACAGC-ATTTATACACCAAAATTTAAC
1 TATACAACAAATAGG-CAGCATATACATACCAAATTAAACAGCAATTT-TACACCAAAATTTAAC
** * * * *
59979086 AGCATATATACAGTAAATAGGCAGCATATACATACCCATTTTAACAGCACTTTTACACCAAAAAT
64 AGCATATATACAACAAATGGGCAGCATATACATACCAAATTGAACAGCACTTTTACACCAAAAAT
59979151 TAACAGCATA
129 TAACAGCATA
* * * * *
59979161 TATATAGCAAATAGGCAGCATATTCATACCAAATTTAACAGCACTTTTACACCAAAATTTAACAG
1 TATACAACAAATAGGCAGCATATACATACCAAATTAAACAGCAATTTTACACCAAAATTTAACAG
* * *
59979226 CATATATACAACAAATGGGCAGCATATACATACCAAATTGAGCAGCATTTTTACA-CAAAATTTA
66 CATATATACAACAAATGGGCAGCATATACATACCAAATTGAACAGCACTTTTACACCAAAAATTA
59979290 ACAGCATA
131 ACAGCATA
* *
59979298 TATACAACAAATAGGCAGCATATACATACCAAATTGAGCAGCAATTTTACACC-AAATTTGAACA
1 TATACAACAAATAGGCAGCATATACATACCAAATTAAACAGCAATTTTACACCAAAATTT-AACA
* *
59979362 GTATATATAAAACAAATGGGCAGCATATACATA
65 GCATATATACAACAAATGGGCAGCATATACATA
59979395 ATACATCATA
Statistics
Matches: 207, Mismatches: 25, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
136 6 0.03
137 98 0.47
138 88 0.43
139 15 0.07
ACGTcount: A:0.45, C:0.19, G:0.10, T:0.26
Consensus pattern (138 bp):
TATACAACAAATAGGCAGCATATACATACCAAATTAAACAGCAATTTTACACCAAAATTTAACAG
CATATATACAACAAATGGGCAGCATATACATACCAAATTGAACAGCACTTTTACACCAAAAATTA
ACAGCATA
Found at i:59980289 original size:41 final size:41
Alignment explanation
Indices: 59980210--59980360 Score: 151
Period size: 41 Copynumber: 3.7 Consensus size: 41
59980200 TAAAACACCG
* * * * * *
59980210 GCATAAAGCCTGCTAGGCACAAAGCCCGATACATTTCACTG
1 GCATAAAGCCTGCTAGACATAAAGCCTGATATAATTCACTA
*
59980251 GCATAAAGCCTGCTAGACATAAAGTCTGATATAATTCACTA
1 GCATAAAGCCTGCTAGACATAAAGCCTGATATAATTCACTA
* * * * * * *
59980292 GCACAGAGCCTTCT-GATATCAAGCTTGATATAATTCACCA
1 GCATAAAGCCTGCTAGACATAAAGCCTGATATAATTCACTA
* *
59980332 GCATAAAGCCTACTAGGCATAAAGCCTGA
1 GCATAAAGCCTGCTAGACATAAAGCCTGA
59980361 ACTTACAAAA
Statistics
Matches: 87, Mismatches: 22, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
40 32 0.37
41 55 0.63
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (41 bp):
GCATAAAGCCTGCTAGACATAAAGCCTGATATAATTCACTA
Found at i:59980972 original size:16 final size:16
Alignment explanation
Indices: 59980951--59980987 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
59980941 TTCACCTACT
59980951 AGCATCATAAAACTCA
1 AGCATCATAAAACTCA
59980967 AGCATCATAAAACTCA
1 AGCATCATAAAACTCA
59980983 AGCAT
1 AGCAT
59980988 TCATCAATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.49, C:0.24, G:0.08, T:0.19
Consensus pattern (16 bp):
AGCATCATAAAACTCA
Found at i:59993020 original size:15 final size:15
Alignment explanation
Indices: 59993000--59993029 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
59992990 TATAATTTTA
59993000 ATATTTTAATAATTT
1 ATATTTTAATAATTT
*
59993015 ATATTTTTATAATTT
1 ATATTTTAATAATTT
59993030 TTAAATGATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
ATATTTTAATAATTT
Found at i:59993108 original size:16 final size:18
Alignment explanation
Indices: 59993084--59993120 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
59993074 ACATTTATCA
*
59993084 TTATTAATT-TAAAA-TT
1 TTATAAATTATAAAAGTT
59993100 TTATAAATTATAAAAGTT
1 TTATAAATTATAAAAGTT
59993118 TTA
1 TTA
59993121 AATAAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 8 0.44
17 5 0.28
18 5 0.28
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (18 bp):
TTATAAATTATAAAAGTT
Found at i:60004788 original size:19 final size:19
Alignment explanation
Indices: 60004752--60004789 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
60004742 TTGGATTAGA
*
60004752 TTTATATTATTATAAATTT
1 TTTATATTATTAAAAATTT
60004771 TTTATATT-TTAAATAATTT
1 TTTATATTATTAAA-AATTT
60004790 AAAAGTAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
TTTATATTATTAAAAATTT
Found at i:60016767 original size:15 final size:15
Alignment explanation
Indices: 60016744--60016775 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
60016734 GTCGAATCAT
*
60016744 ATAATCCTTAACTGA
1 ATAACCCTTAACTGA
60016759 ATAACCCTTAACTGA
1 ATAACCCTTAACTGA
60016774 AT
1 AT
60016776 TGAAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.41, C:0.22, G:0.06, T:0.31
Consensus pattern (15 bp):
ATAACCCTTAACTGA
Found at i:60019522 original size:13 final size:13
Alignment explanation
Indices: 60019504--60019528 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60019494 AAGCAGGTGG
60019504 AATATATATATAA
1 AATATATATATAA
60019517 AATATATATATA
1 AATATATATATA
60019529 GACATAATGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
AATATATATATAA
Found at i:60022949 original size:19 final size:20
Alignment explanation
Indices: 60022925--60022970 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
60022915 TACAAAATAA
*
60022925 TCAAAATAATTT-TTAAAA-T
1 TCAAAAT-ATTTATAAAAATT
60022944 TCAAAATATTTATAAAAATT
1 TCAAAATATTTATAAAAATT
60022964 TCAAAAT
1 TCAAAAT
60022971 TTATATTTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 4 0.17
19 12 0.50
20 8 0.33
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (20 bp):
TCAAAATATTTATAAAAATT
Found at i:60026519 original size:26 final size:26
Alignment explanation
Indices: 60026480--60026532 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
60026470 TTTAGCTCGA
60026480 TTTGAAATACGTACATAAAATTTTGT
1 TTTGAAATACGTACATAAAATTTTGT
*
60026506 TTTGAAATATGTACATAAAATTTTGT
1 TTTGAAATACGTACATAAAATTTTGT
60026532 T
1 T
60026533 CAAGCCTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.06, G:0.11, T:0.45
Consensus pattern (26 bp):
TTTGAAATACGTACATAAAATTTTGT
Found at i:60046009 original size:22 final size:23
Alignment explanation
Indices: 60045956--60046010 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
60045946 ATTTGTCATT
*
60045956 ATAA-AAATAAAACAAATTTAGA
1 ATAATAAATATAACAAATTTAGA
* *
60045978 TTAATGAATATAACAAATTT-GA
1 ATAATAAATATAACAAATTTAGA
60046000 ATAATAAATAT
1 ATAATAAATAT
60046011 CTAAAATTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
22 14 0.52
23 13 0.48
ACGTcount: A:0.60, C:0.04, G:0.05, T:0.31
Consensus pattern (23 bp):
ATAATAAATATAACAAATTTAGA
Found at i:60048072 original size:125 final size:124
Alignment explanation
Indices: 60047877--60048132 Score: 325
Period size: 125 Copynumber: 2.1 Consensus size: 124
60047867 AAATAGTGGG
** * * * *
60047877 AAATCGCTTCTACTAGGATGCTATTTGAGAAGAAATTGTGAAATCGTGGCCTCGTGGACGCGATT
1 AAATCGCTAATACAAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCGTGGACGCGACT
* **
60047942 TCGCTACAG-TGGTCATGTAAGAAATAATTTTTTTTGATGTTTTCTGAGCAAATAGTATA
66 TCGCTACAGTTAGTCATGTAAGAAATAATTTTTTTTGA-CATTTCTGAGCAAATAGTATA
* * * *
60048001 AAATCGCTAATACAAGGATGCTATATTGGGCAGAAATTGTTAAATCGCGCCCTCGTGGATGCGAC
1 AAATCGCTAATACAAGGATGCTAT-TTGAGAAGAAATTGTGAAATCGCGCCCTCGTGGACGCGAC
** * * *
60048066 TTCGCTACAGTTAGTCATGTTGGAAATAATTTTTTTTTACATTTCTGAGCAAATAGTGTC
65 TTCGCTACAGTTAGTCATGTAAGAAATAATTTTTTTTGACATTTCTGAGCAAATAGTATA
60048126 AAATCGC
1 AAATCGC
60048133 GCCCTCGTGG
Statistics
Matches: 112, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
124 21 0.19
125 67 0.60
126 24 0.21
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (124 bp):
AAATCGCTAATACAAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCGTGGACGCGACT
TCGCTACAGTTAGTCATGTAAGAAATAATTTTTTTTGACATTTCTGAGCAAATAGTATA
Found at i:60051341 original size:7 final size:7
Alignment explanation
Indices: 60051331--60051364 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
60051321 TTGTATGTTA
60051331 GGTTTAG
1 GGTTTAG
60051338 GGTTTAG
1 GGTTTAG
*
60051345 GGTTAAG
1 GGTTTAG
60051352 GGTTTAG
1 GGTTTAG
60051359 GGTTTA
1 GGTTTA
60051365 TAATTAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.18, C:0.00, G:0.41, T:0.41
Consensus pattern (7 bp):
GGTTTAG
Found at i:60051371 original size:21 final size:21
Alignment explanation
Indices: 60051331--60051371 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
60051321 TTGTATGTTA
**
60051331 GGTTTAGGGTTTAGGGTTAAG
1 GGTTTAGGGTTTAGAATTAAG
*
60051352 GGTTTAGGGTTTATAATTAA
1 GGTTTAGGGTTTAGAATTAA
60051372 ATTAAGTTAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.34, T:0.41
Consensus pattern (21 bp):
GGTTTAGGGTTTAGAATTAAG
Found at i:60051393 original size:29 final size:29
Alignment explanation
Indices: 60051350--60052194 Score: 1040
Period size: 30 Copynumber: 29.2 Consensus size: 29
60051340 TTTAGGGTTA
60051350 AGGGTTTAGGGTTTATAATTAAATTAAGTT
1 AGGG-TTAGGGTTTATAATTAAATTAAGTT
* *
60051380 AGGGTTAAGGTTTATAATTAAATTAGGTT
1 AGGGTTAGGGTTTATAATTAAATTAAGTT
* *
60051409 AGGGTTTAGTGTTTTTAATTAAATTAAGTT
1 AGGG-TTAGGGTTTATAATTAAATTAAGTT
* *
60051439 AGGGTTAGGGTTTATAATTAAATCAGGTT
1 AGGGTTAGGGTTTATAATTAAATTAAGTT
* *
60051468 AGGGTTTAGAGTTTTTAATTAAATTAAGTT
1 AGGG-TTAGGGTTTATAATTAAATTAAGTT
* *
60051498 AGGGTTAGGGTTTATAATTAAATCAGGTT
1 AGGGTTAGGGTTTATAATTAAATTAAGTT
60051527 AGGGTTTAGGGTTTATAATTAAATTAAGTT
1 AGGG-TTAGGGTTTATAATTAAATTAAGTT
*
60051557 AGGGTTTAGGGTTTATAATTAAATTAGGTT
1 AGGG-TTAGGGTTTATAATTAAATTAAGTT
*
60051587 AGGGTTTAGGGTTTGTAATTAAATTAAGTT
1 AGGG-TTAGGGTTTATAATTAAATTAAGTT
* *
60051617 AGGGTTAGGGTTTGTAATTAAATTAGGTT
1 AGGGTTAGGGTTTATAATTAAATTAAGTT
* *
60051646 AGGGTTTGGGGTTTGTAATTAAATTAAGTT
1 AGGG-TTAGGGTTTATAATTAAATTAAGTT
*
60051676 AGGGTTTAGGGTTTTTAATTAAATTAAGTT
1 AGGG-TTAGGGTTTATAATTAAATTAAGTT
*
60051706 AGGGTTTAGAGTTTATAATTAAATTAAGTT
1 AGGG-TTAGGGTTTATAATTAAATTAAGTT
* *
60051736 AGGGTTTAAGGTTTTTAATTAAATTAAGTT
1 AGGG-TTAGGGTTTATAATTAAATTAAGTT
*
60051766 AGGGTTTAGGGTTTTTAATTAAATTAAGTT
1 AGGG-TTAGGGTTTATAATTAAATTAAGTT
*
60051796 AGGGTTAGGGTTTATAATTAAATTAGGTT
1 AGGGTTAGGGTTTATAATTAAATTAAGTT
*
60051825 AGGGTTAGGGTTTTTAATTAAATTAAGTT
1 AGGGTTAGGGTTTATAATTAAATTAAGTT
*
60051854 AGGGTTAGGGTTTATAATTAAATTAGGTT
1 AGGGTTAGGGTTTATAATTAAATTAAGTT
* * *
60051883 AGAGTTAGGGTTTTTAATTAAATTTA--T
1 AGGGTTAGGGTTTATAATTAAATTAAGTT
* *
60051910 -GGTTTAGAGTTTATAATTAAATTAAGTT
1 AGGGTTAGGGTTTATAATTAAATTAAGTT
* *
60051938 AGGGTTATGGTTTATAATTAAATTAGGTT
1 AGGGTTAGGGTTTATAATTAAATTAAGTT
*
60051967 AGGGTTAGGGTTTTTAATTAAATTAAGTT
1 AGGGTTAGGGTTTATAATTAAATTAAGTT
* *
60051996 A-GGTTAGGGGTTT-TAATTCAATTAGGTT
1 AGGGTTA-GGGTTTATAATTAAATTAAGTT
* *
60052024 AGGTTTTAGGGTTTATAATTACATTAAGTT
1 AGG-GTTAGGGTTTATAATTAAATTAAGTT
* * *
60052054 A-GGTTAGGGTTTTTAATTCAATTAGGTT
1 AGGGTTAGGGTTTATAATTAAATTAAGTT
*
60052082 A-GGTTAGGGTTT-TCAATTCAATTAAGTT
1 AGGGTTAGGGTTTAT-AATTAAATTAAGTT
60052110 AGGG-T----TTT-TAATTAAATTAAGTT
1 AGGGTTAGGGTTTATAATTAAATTAAGTT
* *
60052133 A-GGTTAGGGGTTT-TAATTCAATTAGGTT
1 AGGGTTA-GGGTTTATAATTAAATTAAGTT
* *
60052161 A-GGTTAGGGTTTTTAATTCAATTAAGTT
1 AGGGTTAGGGTTTATAATTAAATTAAGTT
60052189 AGGGTT
1 AGGGTT
60052195 TTTAATTAAA
Statistics
Matches: 722, Mismatches: 72, Indels: 43
0.86 0.09 0.05
Matches are distributed among these distances:
22 2 0.00
23 15 0.02
24 4 0.01
26 20 0.03
27 8 0.01
28 105 0.15
29 275 0.38
30 293 0.41
ACGTcount: A:0.31, C:0.01, G:0.24, T:0.44
Consensus pattern (29 bp):
AGGGTTAGGGTTTATAATTAAATTAAGTT
Found at i:60051405 original size:24 final size:23
Alignment explanation
Indices: 60051371--60051416 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
60051361 TTTATAATTA
*
60051371 AATTAAGTTAGGGTTAAGGTTTAT
1 AATTAAATTA-GGTTAAGGTTTAT
*
60051395 AATTAAATTAGGTTAGGGTTTA
1 AATTAAATTAGGTTAAGGTTTA
60051417 GTGTTTTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.35, C:0.00, G:0.24, T:0.41
Consensus pattern (23 bp):
AATTAAATTAGGTTAAGGTTTAT
Found at i:60051428 original size:59 final size:59
Alignment explanation
Indices: 60051345--60052194 Score: 1125
Period size: 59 Copynumber: 14.7 Consensus size: 59
60051335 TAGGGTTTAG
* *
60051345 GGTTAAGGGTTTAGGGTTTATAATTAAATTAAGTTAGGGTTAAGGTTTATAATTAAATTA
1 GGTT-AGGGTTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTTATAATTAAATTA
* *
60051405 GGTTAGGGTTTAGTGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTTATAATTAAATCA
1 GGTTAGGGTTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTTATAATTAAATTA
* *
60051464 GGTTAGGGTTTAGAGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTTATAATTAAATCA
1 GGTTAGGGTTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTTATAATTAAATTA
*
60051523 GGTTAGGGTTTAGGGTTTATAATTAAATTAAGTTAGGGTTTAGGGTTTATAATTAAATTA
1 GGTTAGGGTTTAGGGTTTTTAATTAAATTAAGTTAGGG-TTAGGGTTTATAATTAAATTA
* *
60051583 GGTTAGGGTTTAGGGTTTGTAATTAAATTAAGTTAGGGTTAGGGTTTGTAATTAAATTA
1 GGTTAGGGTTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTTATAATTAAATTA
* * *
60051642 GGTTAGGGTTTGGGGTTTGTAATTAAATTAAGTTAGGGTTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTAGGGTTTTTAATTAAATTAAGTTAGGG-TTAGGGTTTATAATTAAATTA
* * * * *
60051702 AGTTAGGGTTTAGAGTTTATAATTAAATTAAGTTAGGGTTTAAGGTTTTTAATTAAATTA
1 GGTTAGGGTTTAGGGTTTTTAATTAAATTAAGTTAGGG-TTAGGGTTTATAATTAAATTA
*
60051762 AGTTAGGGTTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTTATAATTAAATTA
1 GGTTAGGGTTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTTATAATTAAATTA
60051821 GGTTAGGG-TTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTTATAATTAAATTA
1 GGTTAGGGTTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTTATAATTAAATTA
* * * *
60051879 GGTTAGAG-TTAGGGTTTTTAATTAAATTTA--T-GGTTTAGAGTTTATAATTAAATTA
1 GGTTAGGGTTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTTATAATTAAATTA
* * * * *
60051934 AGTTAGGG-TTATGGTTTATAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTTATAATTAAATTA
* * * * * *
60051992 AGTTA-GG-TTAGGGGTTTTAATTCAATTAGGTTAGGTTTTAGGGTTTATAATTACATTA
1 GGTTAGGGTTTAGGGTTTTTAATTAAATTAAGTTAGG-GTTAGGGTTTATAATTAAATTA
* * * *
60052050 AGTTA-GG-TTAGGGTTTTTAATTCAATTAGGTTA-GGTTAGGGTTT-TCAATTCAATTA
1 GGTTAGGGTTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTTAT-AATTAAATTA
*
60052106 ----A--G-TTAGGGTTTTTAATTAAATTAAGTTA-GGTTAGGGGTTT-TAATTCAATTA
1 GGTTAGGGTTTAGGGTTTTTAATTAAATTAAGTTAGGGTTA-GGGTTTATAATTAAATTA
*
60052157 GGTTA-GG-TTAGGGTTTTTAATTCAATTAAGTTAGGGTT
1 GGTTAGGGTTTAGGGTTTTTAATTAAATTAAGTTAGGGTT
60052195 TTTAATTAAA
Statistics
Matches: 727, Mismatches: 49, Indels: 31
0.90 0.06 0.04
Matches are distributed among these distances:
51 40 0.06
52 8 0.01
55 48 0.07
56 44 0.06
57 32 0.04
58 155 0.21
59 228 0.31
60 172 0.24
ACGTcount: A:0.31, C:0.01, G:0.24, T:0.44
Consensus pattern (59 bp):
GGTTAGGGTTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTTATAATTAAATTA
Found at i:60052078 original size:23 final size:24
Alignment explanation
Indices: 60051987--60052210 Score: 148
Period size: 28 Copynumber: 8.5 Consensus size: 24
60051977 TTTTTAATTA
*
60051987 AATT-AAGTTAGGTTAGGGGTTTT
1 AATTCAAGTTAGGTTAGGGTTTTT
*
60052010 AATTCAATTAGGTTAGGTTTTAGGGTTTAT
1 AATTC-A--A-GTTAGG--TTAGGGTTTTT
60052040 AATTACATTAAGTTAGGTTAGGGTTTTT
1 AATT-C---AAGTTAGGTTAGGGTTTTT
*
60052068 AATTCAATTAGGTTAGGTTAGGGTTTTC
1 AATTC-A--A-GTTAGGTTAGGGTTTTT
*
60052096 AATTCAA-TTAAGTTAGGGTTTTT
1 AATTCAAGTTAGGTTAGGGTTTTT
* *
60052119 AATTAAATTAAGTTAGGTTAGGGGTTTT
1 AA-T---TCAAGTTAGGTTAGGGTTTTT
60052147 AATTCAATTAGGTTAGGTTAGGGTTTTT
1 AATTC-A--A-GTTAGGTTAGGGTTTTT
*
60052175 AATTCAA-TTAAGTTAGGGTTTTT
1 AATTCAAGTTAGGTTAGGGTTTTT
* *
60052198 AATTAAATTTAGG
1 AATTCAAGTTAGG
60052211 GGTTTTAATC
Statistics
Matches: 162, Mismatches: 16, Indels: 45
0.73 0.07 0.20
Matches are distributed among these distances:
23 41 0.25
24 6 0.04
25 5 0.03
27 10 0.06
28 78 0.48
30 19 0.12
31 2 0.01
33 1 0.01
ACGTcount: A:0.29, C:0.03, G:0.23, T:0.45
Consensus pattern (24 bp):
AATTCAAGTTAGGTTAGGGTTTTT
Found at i:60052211 original size:19 final size:19
Alignment explanation
Indices: 60052164--60052224 Score: 59
Period size: 19 Copynumber: 3.0 Consensus size: 19
60052154 TTAGGTTAGG
*
60052164 TTAGGGTTTTTAATTCAATTAAG
1 TTAGGGTTTTTAATT--A--AAT
60052187 TTAGGGTTTTTAATTAAAT
1 TTAGGGTTTTTAATTAAAT
* *
60052206 TTAGGGGTTTTAATCAAAT
1 TTAGGGTTTTTAATTAAAT
60052225 AATGTCAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
19 19 0.54
21 1 0.03
23 15 0.43
ACGTcount: A:0.31, C:0.03, G:0.18, T:0.48
Consensus pattern (19 bp):
TTAGGGTTTTTAATTAAAT
Found at i:60054377 original size:14 final size:15
Alignment explanation
Indices: 60054360--60054393 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
60054350 AATAAATATC
60054360 TAAAAATA-CATAAA
1 TAAAAATAGCATAAA
*
60054374 TAAAAATAGCTTAAA
1 TAAAAATAGCATAAA
60054389 TAAAA
1 TAAAA
60054394 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.06, G:0.03, T:0.24
Consensus pattern (15 bp):
TAAAAATAGCATAAA
Found at i:60054406 original size:14 final size:13
Alignment explanation
Indices: 60054389--60054418 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
60054379 ATAGCTTAAA
60054389 TAAAATTTAAAATT
1 TAAAATTT-AAATT
60054403 TAAAATTTAAATT
1 TAAAATTTAAATT
60054416 TAA
1 TAA
60054419 TACTTACCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (13 bp):
TAAAATTTAAATT
Found at i:60054416 original size:6 final size:7
Alignment explanation
Indices: 60054389--60054418 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
60054379 ATAGCTTAAA
60054389 TAAAATT
1 TAAAATT
60054396 TAAAATT
1 TAAAATT
60054403 TAAAATT
1 TAAAATT
60054410 T-AAATT
1 TAAAATT
60054416 TAA
1 TAA
60054419 TACTTACCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
TAAAATT
Found at i:60054626 original size:22 final size:22
Alignment explanation
Indices: 60054596--60054637 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
60054586 ATTTGGAGAT
*
60054596 TTTTTGAAGGAAATTGAGAGGA
1 TTTTGGAAGGAAATTGAGAGGA
*
60054618 TTTTGGAAGGAATTTGAGAG
1 TTTTGGAAGGAAATTGAGAG
60054638 TTTGAGATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (22 bp):
TTTTGGAAGGAAATTGAGAGGA
Found at i:60054705 original size:21 final size:22
Alignment explanation
Indices: 60054639--60054715 Score: 102
Period size: 22 Copynumber: 3.5 Consensus size: 22
60054629 ATTTGAGAGT
* * *
60054639 TTGAGATAATTTTGGAAGGAAT
1 TTGAGAGAATTTTTGAAGGAAA
* *
60054661 TTGAGAGAACTTTTGAAGGGAA
1 TTGAGAGAATTTTTGAAGGAAA
60054683 TTGAGAGAATTTTTGAA-GAAA
1 TTGAGAGAATTTTTGAAGGAAA
60054704 TTGAGAGAATTT
1 TTGAGAGAATTT
60054716 ATTTGTGAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
21 15 0.31
22 33 0.69
ACGTcount: A:0.38, C:0.01, G:0.27, T:0.34
Consensus pattern (22 bp):
TTGAGAGAATTTTTGAAGGAAA
Found at i:60058072 original size:112 final size:111
Alignment explanation
Indices: 60057851--60058078 Score: 332
Period size: 112 Copynumber: 2.0 Consensus size: 111
60057841 GTCTGTTCAA
60057851 TTCAATTAAAAAATATTAAAAATTTAGTTCACCCAATCTATATTGCTTCCCAAGTCAATTGTTTC
1 TTCAATTAAAAAATATTAAAAATTTAGTTCACCCAATCTATATTGCTTCCCAAGTCAATTGTTTC
* * * * * *
60057916 AATGCCCTTTTCTGGAATAGTACCTCTGCTCAAGTGGTCGGTCCAG
66 AATGCCCTTGTCTGGAACAGTACATCTGATCAAGCGGTCAGTCCAG
* *
60057962 TTCAATTAAAAAAATATTAAAAATTTAGTTCACCCAATCTATATTGTTTTCCAAGTCAATTGTTT
1 TTCAATT-AAAAAATATTAAAAATTTAGTTCACCCAATCTATATTGCTTCCCAAGTCAATTGTTT
* * *
60058027 CAATGTCCTTGTCTGGAACGGTACAT-TGGATCGAGCGGTCAGTCCAG
65 CAATGCCCTTGTCTGGAACAGTACATCT-GATCAAGCGGTCAGTCCAG
60058074 TTCAA
1 TTCAA
60058079 ACAACCTTGA
Statistics
Matches: 104, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
111 8 0.08
112 96 0.92
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (111 bp):
TTCAATTAAAAAATATTAAAAATTTAGTTCACCCAATCTATATTGCTTCCCAAGTCAATTGTTTC
AATGCCCTTGTCTGGAACAGTACATCTGATCAAGCGGTCAGTCCAG
Found at i:60065301 original size:24 final size:22
Alignment explanation
Indices: 60065244--60065307 Score: 69
Period size: 24 Copynumber: 2.9 Consensus size: 22
60065234 CAAAATATTA
*
60065244 ATAAAATTA-TTTTATATTAAT
1 ATAAAAATATTTTTATATTAAT
*
60065265 ATATAAATATTTTTATAATTAAAT
1 ATAAAAATATTTTTAT-ATT-AAT
*
60065289 TTAAAAATATTTTT-TATTA
1 ATAAAAATATTTTTATATTA
60065308 TTTAAATCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
21 8 0.22
22 9 0.25
23 4 0.11
24 15 0.42
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
ATAAAAATATTTTTATATTAAT
Found at i:60065678 original size:29 final size:28
Alignment explanation
Indices: 60065646--60065753 Score: 88
Period size: 29 Copynumber: 4.0 Consensus size: 28
60065636 TATTTTTATT
60065646 TTTTTAATTTTAAAATACTTTTAAAATA
1 TTTTTAATTTTAAAATACTTTTAAAATA
** *
60065674 CTTTTTTAAATTTT--TTTAATTTTAAAATA
1 --TTTTT-AATTTTAAAATACTTTTAAAATA
60065703 ----T--TTTTAAAATACTTTTTAAAATA
1 TTTTTAATTTTAAAATAC-TTTTAAAATA
*
60065726 TTTTTAATTTTAAAATATTTTTAAAATA
1 TTTTTAATTTTAAAATACTTTTAAAATA
60065754 AATATTTTTT
Statistics
Matches: 61, Mismatches: 7, Indels: 22
0.68 0.08 0.24
Matches are distributed among these distances:
20 4 0.07
22 2 0.03
23 11 0.18
27 1 0.02
28 10 0.16
29 22 0.36
30 5 0.08
31 6 0.10
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (28 bp):
TTTTTAATTTTAAAATACTTTTAAAATA
Found at i:60065693 original size:40 final size:40
Alignment explanation
Indices: 60065643--60065753 Score: 195
Period size: 40 Copynumber: 2.8 Consensus size: 40
60065633 AAATATTTTT
* *
60065643 ATTTTTTTAATTTTAAAATACTTTTAAAATACTTTTTTAA
1 ATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTAAA
60065683 ATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTAAA
1 ATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTAAA
*
60065723 ATATTTTTAATTTTAAAATATTTTTAAAATA
1 ATTTTTTTAATTTTAAAATATTTTTAAAATA
60065754 AATATTTTTT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 68 1.00
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57
Consensus pattern (40 bp):
ATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTAAA
Found at i:60065747 original size:11 final size:11
Alignment explanation
Indices: 60065653--60065753 Score: 87
Period size: 11 Copynumber: 9.9 Consensus size: 11
60065643 ATTTTTTTAA
*
60065653 TTTTAAAATAC
1 TTTTAAAATAT
60065664 TTTTAAAATACT
1 TTTTAAAATA-T
*
60065676 TTTTTAAAT-T
1 TTTTAAAATAT
*
60065686 TTTT----TAA
1 TTTTAAAATAT
60065693 TTTTAAAATAT
1 TTTTAAAATAT
60065704 TTTTAAAATACT
1 TTTTAAAATA-T
60065716 TTTTAAAATAT
1 TTTTAAAATAT
60065727 TTTT---A-A-
1 TTTTAAAATAT
60065733 TTTTAAAATAT
1 TTTTAAAATAT
60065744 TTTTAAAATA
1 TTTTAAAATA
60065754 AATATTTTTT
Statistics
Matches: 74, Mismatches: 4, Indels: 24
0.73 0.04 0.24
Matches are distributed among these distances:
6 5 0.07
7 5 0.07
8 1 0.01
9 1 0.01
10 6 0.08
11 37 0.50
12 19 0.26
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:60065769 original size:40 final size:39
Alignment explanation
Indices: 60065638--60065772 Score: 157
Period size: 40 Copynumber: 3.4 Consensus size: 39
60065628 ATAATAAATA
* * *
60065638 TTTTT-ATTTTTTTAATTTTAAAATACTTTTAAAATACT
1 TTTTTAATATTTTTAATTTTAAAATATTTTTAAAATAAT
* *
60065676 TTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATACT
1 TTTTT-AATATTTTTAATTTTAAAATATTTTTAAAATAAT
*
60065716 TTTTAAAATATTTTTAATTTTAAAATATTTTTAAAATAAAT
1 TTTT-TAATATTTTTAATTTTAAAATATTTTTAAAAT-AAT
*
60065757 ATTTTTTA-ATTTTTAA
1 -TTTTTAATATTTTTAA
60065773 AATAAATTTT
Statistics
Matches: 86, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
38 5 0.06
40 74 0.86
41 3 0.03
42 4 0.05
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (39 bp):
TTTTTAATATTTTTAATTTTAAAATATTTTTAAAATAAT
Found at i:60065794 original size:23 final size:23
Alignment explanation
Indices: 60065742--60065797 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
60065732 ATTTTAAAAT
**
60065742 ATTTTTAAAATAAATATTTTTTA
1 ATTTTTAAAATAAATATTTGATA
60065765 ATTTTTAAAATAAAT-TTTGATA
1 ATTTTTAAAATAAATATTTGATA
*
60065787 TTTATTTAAAA
1 ATT-TTTAAAA
60065798 AAAAGGCCCG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 7 0.24
23 22 0.76
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (23 bp):
ATTTTTAAAATAAATATTTGATA
Found at i:60069737 original size:21 final size:20
Alignment explanation
Indices: 60069711--60069757 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
60069701 TGAATGCTGA
* *
60069711 TTTTTGGTTAAGATTTTTCAT
1 TTTTTGGATAAGAATTTT-AT
60069732 TTTTTGGATAAGAATTTTAT
1 TTTTTGGATAAGAATTTTAT
*
60069752 TGTTTG
1 TTTTTG
60069758 ATTTGTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.21, C:0.02, G:0.17, T:0.60
Consensus pattern (20 bp):
TTTTTGGATAAGAATTTTAT
Found at i:60074000 original size:6 final size:7
Alignment explanation
Indices: 60073980--60074004 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
60073970 TAAAATCATT
60073980 AATAAAA
1 AATAAAA
60073987 AATAAAA
1 AATAAAA
60073994 AATAAAA
1 AATAAAA
60074001 AATA
1 AATA
60074005 TTTTTTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (7 bp):
AATAAAA
Found at i:60074326 original size:13 final size:13
Alignment explanation
Indices: 60074310--60074362 Score: 54
Period size: 13 Copynumber: 4.1 Consensus size: 13
60074300 TTTAAGCTAA
60074310 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* **
60074323 ACTTCTCAAAATA
1 ACTTTTCAAAAGC
*
60074336 ACTTTTTCACAA-C
1 AC-TTTTCAAAAGC
60074349 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
60074362 A
1 A
60074363 ACGAAAAATT
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
12 8 0.26
13 16 0.52
14 7 0.23
ACGTcount: A:0.40, C:0.25, G:0.04, T:0.32
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:60074651 original size:20 final size:19
Alignment explanation
Indices: 60074621--60074671 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
60074611 AGTAAAGTAT
60074621 AAATA-ATTAAATGAAAAC
1 AAATACATTAAATGAAAAC
*
60074639 GAAATACATTAAACG-AAAC
1 -AAATACATTAAATGAAAAC
60074658 AAA-AC-TTAAATGAA
1 AAATACATTAAATGAA
60074672 TTAAATTCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
16 6 0.21
17 3 0.11
18 3 0.11
19 9 0.32
20 7 0.25
ACGTcount: A:0.63, C:0.10, G:0.08, T:0.20
Consensus pattern (19 bp):
AAATACATTAAATGAAAAC
Found at i:60078753 original size:26 final size:28
Alignment explanation
Indices: 60078717--60078774 Score: 75
Period size: 26 Copynumber: 2.1 Consensus size: 28
60078707 CTCAAATAAA
*
60078717 AAATAATAATATT-TTATAATTAAAT-T
1 AAATAAGAATATTATTATAATTAAATAT
* *
60078743 AAATAAGAATATTATTGTTATTAAATAT
1 AAATAAGAATATTATTATAATTAAATAT
60078771 AAAT
1 AAAT
60078775 TCCAAGGCAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 12 0.44
27 10 0.37
28 5 0.19
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.43
Consensus pattern (28 bp):
AAATAAGAATATTATTATAATTAAATAT
Found at i:60081468 original size:132 final size:132
Alignment explanation
Indices: 60081217--60081611 Score: 664
Period size: 132 Copynumber: 3.0 Consensus size: 132
60081207 CACGAGCATA
60081217 TCTCCTTGATTAGAGGGATGAAGCTGAGAACATTCTTCAAAATTTTCTCCCATGCCAGGATTAAT
1 TCTCCTTGATTAGAGGGATGAAGCTGAGAACATTCTTCAAAATTTTCTCCCATGCCAGGATTAAT
* * * * * *
60081282 TTCATCAACTTGTGGGGTTTCTACGGTTGATAAAGTAGCCGCAAGGGAAACTTCCTCCGACCTAG
66 TTCAACAACTTGAGGGTTTTCTACGGTTGATAAAGTAGCCACGAGGGTAACTTCCTCCGACCTAG
60081347 CC
131 CC
* *
60081349 TCTCCTTGATTGGAGGGATGAAGCTGAGAACATTCTTCAAAATTTTCTCCCACGCCAGGATTAAT
1 TCTCCTTGATTAGAGGGATGAAGCTGAGAACATTCTTCAAAATTTTCTCCCATGCCAGGATTAAT
*
60081414 TTCAACAACTTGAGGGTTTTCTACGGTTGATAAAGTAGCCACGAGGGTACCTTCCTCCGACCTAG
66 TTCAACAACTTGAGGGTTTTCTACGGTTGATAAAGTAGCCACGAGGGTAACTTCCTCCGACCTAG
60081479 CC
131 CC
*
60081481 TCTCCTTGATTAGAGGGATGAAGCTGAGAACATTCTTCAAAATTTACTCCCATGCCAGGATTAAT
1 TCTCCTTGATTAGAGGGATGAAGCTGAGAACATTCTTCAAAATTTTCTCCCATGCCAGGATTAAT
* * * *
60081546 TTCAACAACTTCAGGGTTTTCTATGGTTGATAAAGTAGCCACGAAGGTAACTGCCTCCGACCTAG
66 TTCAACAACTTGAGGGTTTTCTACGGTTGATAAAGTAGCCACGAGGGTAACTTCCTCCGACCTAG
60081611 C
131 C
60081612 TTGTTCTTCT
Statistics
Matches: 246, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 246 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (132 bp):
TCTCCTTGATTAGAGGGATGAAGCTGAGAACATTCTTCAAAATTTTCTCCCATGCCAGGATTAAT
TTCAACAACTTGAGGGTTTTCTACGGTTGATAAAGTAGCCACGAGGGTAACTTCCTCCGACCTAG
CC
Found at i:60085730 original size:30 final size:30
Alignment explanation
Indices: 60085694--60085755 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
60085684 TCCCAATAGG
60085694 CATAAACTATAACTATTGTCGAACTCGGAA
1 CATAAACTATAACTATTGTCGAACTCGGAA
60085724 CATAAACTATAACTATTGTCGAACTCGGAA
1 CATAAACTATAACTATTGTCGAACTCGGAA
60085754 CA
1 CA
60085756 CCTTCATCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.40, C:0.21, G:0.13, T:0.26
Consensus pattern (30 bp):
CATAAACTATAACTATTGTCGAACTCGGAA
Found at i:60090114 original size:48 final size:49
Alignment explanation
Indices: 60090035--60090148 Score: 124
Period size: 48 Copynumber: 2.3 Consensus size: 49
60090025 GTGGTATGAA
*
60090035 ACTTGAACTCGTGACTGCATAATAATCATCAACT-GGAGCCCGAGTTAT
1 ACTTGAACTCGTGACTGCATAACAATCATCAACTGGGAGCCCGAGTTAT
* * * * **
60090083 ACTTGAACTTGTGACTGCATAGCCA-CTATCAATTGGGAGCCTTAGTTAT
1 ACTTGAACTCGTGACTGCATAACAATC-ATCAACTGGGAGCCCGAGTTAT
* *
60090132 ATTTCAACTCGTGACTG
1 ACTTGAACTCGTGACTG
60090149 TATCCACCAT
Statistics
Matches: 54, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
47 1 0.02
48 27 0.50
49 26 0.48
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (49 bp):
ACTTGAACTCGTGACTGCATAACAATCATCAACTGGGAGCCCGAGTTAT
Found at i:60091322 original size:30 final size:30
Alignment explanation
Indices: 60091283--60091370 Score: 90
Period size: 30 Copynumber: 2.9 Consensus size: 30
60091273 AAATTTTAAA
* **
60091283 TTAATAATGATAAAATTATATTTTAAATTT
1 TTAAAAATGATAAAATTATATTTTAAACCT
*
60091313 TTAAAAATGATAAAAATT-TAATTTAAACCT
1 TTAAAAATGAT-AAAATTATATTTTAAACCT
*
60091343 TTAAAAATAAT-AAATATATATTATTAAA
1 TTAAAAATGATAAAAT-TATATT-TTAAA
60091371 ATGATAAAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
28 4 0.08
29 1 0.02
30 32 0.67
31 11 0.23
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (30 bp):
TTAAAAATGATAAAATTATATTTTAAACCT
Found at i:60092364 original size:19 final size:19
Alignment explanation
Indices: 60092340--60092378 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
60092330 GCTTTATCAA
60092340 TAAGGTAATCTTTTCTACT
1 TAAGGTAATCTTTTCTACT
60092359 TAAGGTAATCTTTTCTACT
1 TAAGGTAATCTTTTCTACT
60092378 T
1 T
60092379 TTTTTTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.15, G:0.10, T:0.49
Consensus pattern (19 bp):
TAAGGTAATCTTTTCTACT
Found at i:60092438 original size:33 final size:33
Alignment explanation
Indices: 60092396--60092500 Score: 112
Period size: 33 Copynumber: 3.3 Consensus size: 33
60092386 TTACTTTACA
60092396 TTCATGTTTATTGTAGGTATTTAAACTGTGGGT
1 TTCATGTTTATTGTAGGTATTTAAACTGTGGGT
* ** ****
60092429 TTCATGTTTA-T-AATTTATTT--ACT-TTACA
1 TTCATGTTTATTGTAGGTATTTAAACTGTGGGT
60092457 TTCATGTTTATTGTAGGTATTTAAACTGTGGGT
1 TTCATGTTTATTGTAGGTATTTAAACTGTGGGT
60092490 TTCATGTTTAT
1 TTCATGTTTAT
60092501 AATTTAAGAA
Statistics
Matches: 53, Mismatches: 14, Indels: 10
0.69 0.18 0.13
Matches are distributed among these distances:
28 11 0.21
29 4 0.08
30 6 0.11
31 6 0.11
32 4 0.08
33 22 0.42
ACGTcount: A:0.23, C:0.08, G:0.17, T:0.52
Consensus pattern (33 bp):
TTCATGTTTATTGTAGGTATTTAAACTGTGGGT
Found at i:60092480 original size:61 final size:61
Alignment explanation
Indices: 60092385--60092506 Score: 244
Period size: 61 Copynumber: 2.0 Consensus size: 61
60092375 ACTTTTTTTT
60092385 TTTACTTTACATTCATGTTTATTGTAGGTATTTAAACTGTGGGTTTCATGTTTATAATTTA
1 TTTACTTTACATTCATGTTTATTGTAGGTATTTAAACTGTGGGTTTCATGTTTATAATTTA
60092446 TTTACTTTACATTCATGTTTATTGTAGGTATTTAAACTGTGGGTTTCATGTTTATAATTTA
1 TTTACTTTACATTCATGTTTATTGTAGGTATTTAAACTGTGGGTTTCATGTTTATAATTTA
60092507 AGAAAATGGA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.25, C:0.08, G:0.15, T:0.52
Consensus pattern (61 bp):
TTTACTTTACATTCATGTTTATTGTAGGTATTTAAACTGTGGGTTTCATGTTTATAATTTA
Found at i:60110162 original size:21 final size:20
Alignment explanation
Indices: 60110126--60110164 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
60110116 TTATTGATAT
*
60110126 TTAAAAAATTATATATAAGA
1 TTAAAAAATTAAATATAAGA
60110146 TTAAAAAATTTAAATATAA
1 TTAAAAAA-TTAAATATAA
60110165 AATATCTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (20 bp):
TTAAAAAATTAAATATAAGA
Found at i:60114188 original size:23 final size:24
Alignment explanation
Indices: 60114130--60114194 Score: 89
Period size: 23 Copynumber: 2.7 Consensus size: 24
60114120 ATAATTTCAT
*
60114130 ATTTATATTAATTATATTAATATA
1 ATTTATATTAATTATATCAATATA
60114154 ATTATATATTAATTATATCAA-A-A
1 ATT-TATATTAATTATATCAATATA
60114177 ATATTATATTAATTATAT
1 AT-TTATATTAATTATAT
60114195 ATGTTAAATA
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
23 17 0.45
24 5 0.13
25 16 0.42
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (24 bp):
ATTTATATTAATTATATCAATATA
Found at i:60114191 original size:9 final size:9
Alignment explanation
Indices: 60114132--60114171 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
60114122 AATTTCATAT
60114132 TTATATTAA
1 TTATATTAA
60114141 TTATATTAA
1 TTATATTAA
60114150 -TATAATT-A
1 TTAT-ATTAA
60114158 -TATATTAA
1 TTATATTAA
60114166 TTATAT
1 TTATAT
60114172 CAAAAATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
7 3 0.11
8 8 0.29
9 17 0.61
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (9 bp):
TTATATTAA
Found at i:60114253 original size:85 final size:84
Alignment explanation
Indices: 60114084--60114240 Score: 241
Period size: 85 Copynumber: 1.9 Consensus size: 84
60114074 TATATTATGT
60114084 TATCAAAAATATTATATTAATTATATATGTTAAATAATAATTTCATATTTATATTAATTATATTA
1 TATCAAAAATATTATATTAATTATATATGTTAAATAATAATTTCATATTTATATT-ATTATATTA
* *
60114149 ATATAATTATATATTAATTA
65 ATATAATAATATAATAATTA
60114169 TATCAAAAATATTATATTAATTATATATGTTAAATAATAATTAT-ATATTTATA-T-TTATATTA
1 TATCAAAAATATTATATTAATTATATATGTTAAATAATAATT-TCATATTTATATTATTATATTA
60114231 A-ATAACTAAT
65 ATATAA-TAAT
60114241 CCAGTAATAA
Statistics
Matches: 69, Mismatches: 1, Indels: 7
0.90 0.01 0.09
Matches are distributed among these distances:
81 4 0.06
82 12 0.17
84 1 0.01
85 51 0.74
86 1 0.01
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (84 bp):
TATCAAAAATATTATATTAATTATATATGTTAAATAATAATTTCATATTTATATTATTATATTAA
TATAATAATATAATAATTA
Found at i:60117462 original size:27 final size:27
Alignment explanation
Indices: 60117424--60117477 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
60117414 TGCTTAATTG
60117424 GTTTAAATAGTGTCAATTTTTTTGTTA
1 GTTTAAATAGTGTCAATTTTTTTGTTA
60117451 GTTTAAATAGTGTCAATTTTTTTGTTA
1 GTTTAAATAGTGTCAATTTTTTTGTTA
60117478 ATCTTTTCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.04, G:0.15, T:0.56
Consensus pattern (27 bp):
GTTTAAATAGTGTCAATTTTTTTGTTA
Found at i:60122041 original size:44 final size:42
Alignment explanation
Indices: 60121990--60122100 Score: 123
Period size: 44 Copynumber: 2.5 Consensus size: 42
60121980 GATCTGCTCT
*
60121990 CTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCACTCCA
1 CTGCAACTTCAG-GAGATAAGATCC-AGGCTTTAATCCACTCCA
* * * **
60122034 CTGCAACTTTAGGAAGATAGGATTCCTGGCTTTAATCTGCTCCA
1 CTGCAACTTCAGG-AGATAAGA-TCCAGGCTTTAATCCACTCCA
60122078 CTGCAACTTCAGGGAGATAAGAT
1 CTGCAACTTCA-GGAGATAAGAT
60122101 TTGCCATCTT
Statistics
Matches: 56, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
43 2 0.04
44 49 0.88
45 5 0.09
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (42 bp):
CTGCAACTTCAGGAGATAAGATCCAGGCTTTAATCCACTCCA
Found at i:60122171 original size:89 final size:89
Alignment explanation
Indices: 60122069--60122620 Score: 307
Period size: 89 Copynumber: 6.3 Consensus size: 89
60122059 CTGGCTTTAA
60122069 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTG-CTCACTGCAACTTCA
60122134 GGAG-GATAAGACTTGCTTACTTAG
65 GGAGAGATAAGACTTGCTTACTTAG
* * * * * **
60122158 TCCGCTCCACTGCAACTTCAGGGAGATAAGACTAG--A--TGC-GATATGCTTTCTGCAACTTCA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAG-TCTGCTCACTGCAACTTCA
* ** * *
60122218 -GAGATATAAGATCCAAGGTT--TTAT
65 GGAGAGATAAGA--CTTGCTTACTTAG
* * * * * *
60122242 TTTGC-CCACTGTAACTTCAGCGG-GATAGGA-TTACCGA-CTTTAATCTGCTCTACTGCAACTT
1 TCTGCTCCACTGCAACTTCAG-GGAGATAAGATTTGCC-ATCTTCAGTCTGCTC-ACTGCAACTT
* *
60122303 CAGG-GAGATAAGATTTGC-CATCTTCAG
63 CAGGAGAGATAAGACTTGCTTA-CTT-AG
* * * * *
60122330 TCTGC-CTCACTGCAACTTCA-GGAGGATAAGACTT-ACTTACCT-AGTCCGCTCCACTGCAACT
1 TCTGCTC-CACTGCAACTTCAGGGA-GATAAGATTTGCCAT-CTTCAGTCTGCT-CACTGCAACT
* *
60122391 TCAGG-GAGATAAGACTAG---A-TGAG
62 TCAGGAGAGATAAGACTTGCTTACTTAG
* * * * **** * * * *
60122414 ATCTGCT-CTCTGCAATTTCAGAGAGATAAGATCTAAGGT-TTTAATCCGCCCACTGCAACTTCA
1 -TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCTCACTGCAACTTCA
* * * *** *
60122477 -GCGAGATAGGA-TTACCGGCTTTAA
65 GGAGAGATAAGACTTGCTTAC-TTAG
*
60122501 TCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTG-CTCACTGCAACTTCA
*
60122566 GAAG-GATAAGACTTGCTTACTTAG
65 GGAGAGATAAGACTTGCTTACTTAG
* *
60122590 TCCGCTCCACTGTAACTTCAGGGAGATAAGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA
60122621 CTAGATGCGA
Statistics
Matches: 342, Mismatches: 82, Indels: 78
0.68 0.16 0.16
Matches are distributed among these distances:
82 3 0.01
83 45 0.13
84 55 0.16
85 17 0.05
86 16 0.05
87 50 0.15
88 13 0.04
89 133 0.39
90 10 0.03
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.28
Consensus pattern (89 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCTCACTGCAACTTCAG
GAGAGATAAGACTTGCTTACTTAG
Found at i:60122328 original size:216 final size:216
Alignment explanation
Indices: 60121953--60122782 Score: 1349
Period size: 216 Copynumber: 3.8 Consensus size: 216
60121943 CACCCTGGCT
* * *
60121953 CAACTTCAGGGAGATAACACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAG
1 CAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAG
* *
60122018 GTTTTAATCCACTCCACTGCAACTTTAG-GAAGATAGGATT-CCTGGCTTTAATCTGCTCCACTG
66 GTTTTAATCCGC-CCACTGCAACTTCAGCG-AGATAGGATTACC-GGCTTTAATCTGCTCCACTG
60122081 CAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGAC
128 CAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGAC
60122146 TTGCTTACTTAGTCCGCTCCACTG
193 TTGCTTACTTAGTCCGCTCCACTG
* * *
60122170 CAACTTCAGGGAGATAAGACTAGATGCGATATGCTTTCTGCAACTTCAGAGATATAAGATCCAAG
1 CAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAG
* ** * * * *
60122235 GTTTTATTTTGCCCACTGTAACTTCAGCGGGATAGGATTACCGACTTTAATCTGCTCTACTGCAA
66 GTTTTAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCTGCTCCACTGCAA
*
60122300 CTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTA
131 CTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTG
*
60122365 CTTACCTAGTCCGCTCCACTG
196 CTTACTTAGTCCGCTCCACTG
* * *
60122386 CAACTTCAGGGAGATAAGACTAGATGAGATCTGCTCTCTGCAATTTCAGAGAGATAAGATCTAAG
1 CAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAG
60122451 GTTTTAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCTGCTCCACTGCAA
66 GTTTTAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCTGCTCCACTGCAA
* *
60122516 CTTTAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGAAGGATAAGACTTG
131 CTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTG
60122581 CTTACTTAGTCCGCTCCACTG
196 CTTACTTAGTCCGCTCCACTG
* * * *
60122602 TAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAATTTCAGAGAGATAAGATCTAAG
1 CAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAG
* *
60122667 GTTTTAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCTGTTCCACTGTAA
66 GTTTTAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCTGCTCCACTGCAA
* *
60122732 CTTCAGGGAGATAAGATTTGTCATCTTCAGTTTGCCTCACTGCAACTTCAG
131 CTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAG
60122783 AAGAATAATA
Statistics
Matches: 569, Mismatches: 42, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
216 499 0.88
217 70 0.12
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (216 bp):
CAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAG
GTTTTAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCTGCTCCACTGCAA
CTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTG
CTTACTTAGTCCGCTCCACTG
Found at i:60122781 original size:172 final size:174
Alignment explanation
Indices: 60122498--60122955 Score: 509
Period size: 173 Copynumber: 2.6 Consensus size: 174
60122488 TTACCGGCTT
* * * * * ** * *
60122498 TAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCCATCTTCAGTCTGC-CTCACTGCAAC
1 TAATCCGCTCCACTGCAACTTCAGCGAGATAGGA-TTACCGGCTTTAATCTGCTC-CACTGCAAC
* * * * * *
60122562 TTCA-GAAGGATAAGACTTG-CTTACTT-AGTCCG-CTCCACTGTAACTTCAGGGAG-ATAAGAC
64 TTCAGGGA-GATAAGATTTGCCAT-CTTCAGTCTGCCT-CACTGCAACTTCAGGAAGAATAAGAC
* * * * *
60122622 TAGATGCGATCTGCTCTCTACAATTTCAGAGAGATAAGATCTAAGGTTT
126 TAAATGCGATATGCTCTCTACAACTTCAGAGAGATAAGATCCAAGGTTA
* *
60122671 TAATCCGC-CCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCTGTTCCACTGTAACTT
1 TAATCCGCTCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCTGCTCCACTGCAACTT
* * *
60122735 CAGGGAGATAAGATTTGTCATCTTCAGTTTGCCTCACTGCAACTTCA-GAAGAATAATACTAAAT
66 CAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAAGAATAAGACTAAAT
* * * * *
60122799 GGGATATGCTCTTTGCAACTTCAGTGAGATAATATCCAAGGTTA
131 GCGATATGCTCTCTACAACTTCAGAGAGATAAGATCCAAGGTTA
* * *
60122843 TAATTCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTT
1 TAATCCGCTCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCTGCTCCACTGCAACTT
*
60122908 TAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAG
66 CAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAG
60122956 AAGGACAATA
Statistics
Matches: 240, Mismatches: 37, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
171 40 0.17
172 95 0.40
173 105 0.44
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (174 bp):
TAATCCGCTCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCTGCTCCACTGCAACTT
CAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAAGAATAAGACTAAAT
GCGATATGCTCTCTACAACTTCAGAGAGATAAGATCCAAGGTTA
Found at i:60122874 original size:173 final size:172
Alignment explanation
Indices: 60122597--60122967 Score: 510
Period size: 173 Copynumber: 2.2 Consensus size: 172
60122587 TAGTCCGCTC
* * * * * *
60122597 CACTGTAACTTCAG-GGAGATAAGACTAGATGCGATCTGCTCTCTACAATTTCAGAGAGATAAGA
1 CACTGCAACTTCAGAAGA-ATAATACTAAATGCGATATGCTCTCTACAACTTCAGAGAGATAAGA
* * *
60122661 TCTAAGGTTTTAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCTGTTCCA
65 TCCAAGGTTATAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCTGCTCCA
* * *
60122726 CTGTAACTTCAGGGAGATAAGATTTGTCATCTTCAGTTTGCCT
130 CTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCT
* * * * *
60122769 CACTGCAACTTCAGAAGAATAATACTAAATGGGATATGCTCTTTGCAACTTCAGTGAGATAATAT
1 CACTGCAACTTCAGAAGAATAATACTAAATGCGATATGCTCTCTACAACTTCAGAGAGATAAGAT
* * *
60122834 CCAAGGTTATAATTCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCA
66 CCAAGGTTATAATCCGC-CCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCTGCTCCA
*
60122899 CTGCAACTTTAGGGAGATAAGATTTGCCATCTTCAGTCTGCCT
130 CTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCT
* *
60122942 CACTGCAACTTCAGAAGGACAATACT
1 CACTGCAACTTCAGAAGAATAATACT
60122968 TGCTTATTTA
Statistics
Matches: 174, Mismatches: 23, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
172 65 0.37
173 109 0.63
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (172 bp):
CACTGCAACTTCAGAAGAATAATACTAAATGCGATATGCTCTCTACAACTTCAGAGAGATAAGAT
CCAAGGTTATAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAATCTGCTCCAC
TGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCT
Found at i:60122891 original size:432 final size:431
Alignment explanation
Indices: 60121953--60122922 Score: 1292
Period size: 432 Copynumber: 2.2 Consensus size: 431
60121943 CACCCTGGCT
* * * *
60121953 CAACTTCAGGGAGATAACACTAA-AT-ACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCA
1 CAACTTCAGGGAGATAAGAC-AAGATGA-AATCTGCTCACTGCAACTTCAGAGAGATAAGATCTA
* *
60122016 AGGTTTTAATCCACTCCACTGCAACTTTAGGAAGATAGGATTCCTGGCTTTAATCTGCTCCACTG
64 AGGCTTTAATCCGCTCCACTGCAACTTTAGG-AGATAGGATTCCTGGCTTTAATCTGCTCCACTG
*
60122081 CAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGAC
128 CAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGAAGGATAAGAC
* *
60122146 TTGCTTACTTAGTCCGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATATGCTTTCTGC
193 TTGCTTACTTAGTCCGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATATGCTCTCTAC
* * ** * *
60122211 AACTTCAGAGATATAAGATCCAAGGTTTTATTTTGCCCACTGTAACTTCAGCGGGATAGGATTAC
258 AACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCCCACTGCAACTTCAGCGAGATAGGATTAC
*
60122276 CGACTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACT
323 CGACTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACT
* * * * * *
60122341 GCAACTTCAGGAGGATAAGACTTACTTACCTAGTCCGCTCCACTG
388 GCAACTTCAGAAGAATAAGACTAAATGACATAGT-CGCTCCACTG
* * * *
60122386 CAACTTCAGGGAGATAAGACTAGATGAGATCTGCTCTCTGCAATTTCAGAGAGATAAGATCTAAG
1 CAACTTCAGGGAGATAAGACAAGATGAAATCTGCTCACTGCAACTTCAGAGAGATAAGATCTAAG
* *
60122451 GTTTTAATCCGC-CCACTGCAACTTCAGCGAGATAGGATTACC-GGCTTTAATCTGCTCCACTGC
66 GCTTTAATCCGCTCCACTGCAACTTTAG-GAGATAGGATT-CCTGGCTTTAATCTGCTCCACTGC
*
60122514 AACTTTAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGAAGGATAAGACT
129 AACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGAAGGATAAGACT
* *
60122579 TGCTTACTTAGTCCGCTCCACTGTAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACA
194 TGCTTACTTAGTCCGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATATGCTCTCTACA
* *
60122644 ATTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACC
259 ACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACC
* * * * *
60122709 GGCTTTAATCTGTTCCACTGTAACTTCAGGGAGATAAGATTTGTCATCTTCAGTTTGCCTCACTG
324 GACTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTG
* ** **
60122774 CAACTTCAGAAGAATAATACTAAATGGGATA-T-GCT-CTTTG
389 CAACTTCAGAAGAATAAGACTAAATGACATAGTCGCTCCACTG
* * * * * *
60122814 CAACTTCAGTGAGATAATATCCAAGGTTATAAT-TCGCTCCACTGCAACTTCAGGGAGATAGGAT
1 CAACTTCAGGGAGATAAGA--CAAGATGA-AATCT-GCT-CACTGCAACTTCAGAGAGATAAGAT
* * *
60122878 -TATCGGCTTTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATT
61 CTA-AGGCTTTAATCCGCTCCACTGCAACTTTA-GGAGATAGGATT
60122923 TGCCATCTTC
Statistics
Matches: 473, Mismatches: 52, Indels: 24
0.86 0.09 0.04
Matches are distributed among these distances:
428 20 0.04
429 3 0.01
430 6 0.01
431 8 0.02
432 340 0.72
433 94 0.20
434 2 0.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (431 bp):
CAACTTCAGGGAGATAAGACAAGATGAAATCTGCTCACTGCAACTTCAGAGAGATAAGATCTAAG
GCTTTAATCCGCTCCACTGCAACTTTAGGAGATAGGATTCCTGGCTTTAATCTGCTCCACTGCAA
CTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGAAGGATAAGACTTG
CTTACTTAGTCCGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATATGCTCTCTACAAC
TTCAGAGAGATAAGATCCAAGGTTTTAATCCGCCCACTGCAACTTCAGCGAGATAGGATTACCGA
CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCA
ACTTCAGAAGAATAAGACTAAATGACATAGTCGCTCCACTG
Found at i:60127479 original size:29 final size:30
Alignment explanation
Indices: 60127420--60127477 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
60127410 TCCGAGCCTT
*
60127420 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
60127450 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
60127478 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:60127707 original size:13 final size:13
Alignment explanation
Indices: 60127689--60127720 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
60127679 TTTCCAGCAA
60127689 TTATGAATTTATT
1 TTATGAATTTATT
60127702 TTATGAATTTATT
1 TTATGAATTTATT
*
60127715 TGATGA
1 TTATGA
60127721 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:60127928 original size:50 final size:50
Alignment explanation
Indices: 60127815--60128012 Score: 261
Period size: 50 Copynumber: 3.8 Consensus size: 50
60127805 ATTTGGGTAA
* *
60127815 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAGA-C--G
* *
60127871 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
* *
60127921 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
* * *
60127971 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
60128013 TGTTATTATC
Statistics
Matches: 131, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
50 86 0.66
52 1 0.01
53 3 0.02
55 2 0.02
56 39 0.30
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
Found at i:60128014 original size:106 final size:103
Alignment explanation
Indices: 60127815--60128005 Score: 298
Period size: 106 Copynumber: 1.9 Consensus size: 103
60127805 ATTTGGGTAA
60127815 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
*
60127880 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
60127921 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
60127983 TAAGACCATGTCTGGGACATGGC
66 TAAGACCATGTCTGGGACATGGC
60128006 TTTGGCATGT
Statistics
Matches: 81, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
100 37 0.46
101 2 0.02
105 2 0.02
106 40 0.49
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.20
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:60135015 original size:29 final size:30
Alignment explanation
Indices: 60134956--60135013 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
60134946 TCCGAGCCTT
*
60134956 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
60134986 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
60135014 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:60135243 original size:13 final size:13
Alignment explanation
Indices: 60135225--60135256 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
60135215 TTTCCAGCAA
60135225 TTATGAATTTATT
1 TTATGAATTTATT
60135238 TTATGAATTTATT
1 TTATGAATTTATT
*
60135251 TGATGA
1 TTATGA
60135257 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:60135464 original size:50 final size:50
Alignment explanation
Indices: 60135351--60135548 Score: 261
Period size: 50 Copynumber: 3.8 Consensus size: 50
60135341 ATTTGGGTAA
* *
60135351 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAGA-C--G
* *
60135407 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
* *
60135457 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
* * *
60135507 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
60135549 TGTTATTATC
Statistics
Matches: 131, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
50 86 0.66
52 1 0.01
53 3 0.02
55 2 0.02
56 39 0.30
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
Found at i:60135550 original size:106 final size:103
Alignment explanation
Indices: 60135351--60135541 Score: 298
Period size: 106 Copynumber: 1.9 Consensus size: 103
60135341 ATTTGGGTAA
60135351 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
*
60135416 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
60135457 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
60135519 TAAGACCATGTCTGGGACATGGC
66 TAAGACCATGTCTGGGACATGGC
60135542 TTTGGCATGT
Statistics
Matches: 81, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
100 37 0.46
101 2 0.02
105 2 0.02
106 40 0.49
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.20
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:60142452 original size:11 final size:11
Alignment explanation
Indices: 60142438--60142464 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
60142428 TATTTTTTAA
60142438 TTTTAAAATAC
1 TTTTAAAATAC
60142449 TTTTAAAATAC
1 TTTTAAAATAC
60142460 TTTTA
1 TTTTA
60142465 TTTTTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (11 bp):
TTTTAAAATAC
Found at i:60142503 original size:29 final size:30
Alignment explanation
Indices: 60142449--60142525 Score: 120
Period size: 30 Copynumber: 2.6 Consensus size: 30
60142439 TTTAAAATAC
*
60142449 TTTTAAAATACTTTTATTTTTA-TTTTTTAA
1 TTTTAAAATAATTTT-TTTTTATTTTTTTAA
*
60142479 TTTTAAAATAATTTTTTTTTATTTTTTTAT
1 TTTTAAAATAATTTTTTTTTATTTTTTTAA
60142509 TTTTAAAATAATTTTTT
1 TTTTAAAATAATTTTTT
60142526 AATGTTTATT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
29 6 0.14
30 38 0.86
ACGTcount: A:0.30, C:0.01, G:0.00, T:0.69
Consensus pattern (30 bp):
TTTTAAAATAATTTTTTTTTATTTTTTTAA
Found at i:60145938 original size:17 final size:16
Alignment explanation
Indices: 60145912--60145943 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
60145902 ATATATAATT
60145912 AAAAAATAATTACATA
1 AAAAAATAATTACATA
60145928 AAAATAATAATTACAT
1 AAAA-AATAATTACAT
60145944 CCTAAAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (16 bp):
AAAAAATAATTACATA
Found at i:60148972 original size:3 final size:3
Alignment explanation
Indices: 60148964--60148990 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
60148954 CGAGGGAAAA
60148964 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
60148991 ATTTTTATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:60150161 original size:33 final size:33
Alignment explanation
Indices: 60150119--60150270 Score: 127
Period size: 33 Copynumber: 4.5 Consensus size: 33
60150109 ATGTGAAGGG
*
60150119 GGTTGCTAAGTGCTGATTACCCGACTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
* *
60150152 GGTTGCTAAGTGCTGATTCCACCGTATCTTGAATATAAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A-C-T-CAT-T---GGT
*
60150194 GGTTGCTAAGTGCTGATT-CCC--C-CA-AGG-
1 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
* *
60150221 GGTTGCTAAGTGCTGATTCCCCGATTCATTAGT
1 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
60150254 GGTTGCTAAGTGCTGAT
1 GGTTGCTAAGTGCTGAT
60150271 CCGACCGTAT
Statistics
Matches: 96, Mismatches: 8, Indels: 30
0.72 0.06 0.22
Matches are distributed among these distances:
27 18 0.19
28 5 0.05
31 2 0.02
32 1 0.01
33 37 0.39
34 3 0.03
35 1 0.01
36 2 0.02
37 1 0.01
38 2 0.02
39 1 0.01
40 2 0.02
41 1 0.01
42 20 0.21
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.32
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
Found at i:60150244 original size:102 final size:102
Alignment explanation
Indices: 60150117--60150420 Score: 425
Period size: 102 Copynumber: 3.0 Consensus size: 102
60150107 AAATGTGAAG
* *
60150117 GGGGTTGCTAAGTGCTGATTACCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTT
*
60150182 GAATATAAAGGGGGTTGCTAAGTGCTGATTCCCCCAA
66 GAATGTAAAGGGGGTTGCTAAGTGCTGATTCCCCCAA
* * *
60150219 GGGGTTGCTAAGTGCTGATTCCCCGATTCATTAGTGGTTGCTAAGTGCTGA-TCCGACCGTATTT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCC-ACCGTATCT
* * * *
60150283 TAAATGTGAAGGGGGTTGCTAAGTGATGATTCCTCCAA
65 TGAATGTAAAGGGGGTTGCTAAGTGCTGATTCCCCCAA
* * *
60150321 GGGGTTGCTATGTGCTGATTCCGCAAATCATTGGTGGTTGCTAAGTGCTGATTCCA-CGATATCT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCG-TATC-
*
60150385 TTGAATGTGAAA-GAGGTTGCTAAGTGCTGATTCCCC
64 TTGAATGT-AAAGGGGGTTGCTAAGTGCTGATTCCCC
60150421 GAATCACTGG
Statistics
Matches: 177, Mismatches: 20, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
101 5 0.03
102 139 0.79
103 31 0.18
104 2 0.01
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.32
Consensus pattern (102 bp):
GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTT
GAATGTAAAGGGGGTTGCTAAGTGCTGATTCCCCCAA
Found at i:60150369 original size:33 final size:33
Alignment explanation
Indices: 60150323--60150453 Score: 100
Period size: 33 Copynumber: 3.7 Consensus size: 33
60150313 TCCTCCAAGG
* *
60150323 GGTTGCTATGTGCTGATTCCGCAAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCACAAATCATTGGT
* *
60150356 GGTTGCTAAGTGCTGATTCCACGATATCTTTGAATGTGAAAGA
1 GGTTGCTAAGTGCTGATTCCAC-AAATC-----AT-TG---GT
* * *
60150399 GGTTGCTAAGTGCTGATTCCCCGAATCACTGGT
1 GGTTGCTAAGTGCTGATTCCACAAATCATTGGT
*
60150432 GGTTGCTAAGTGCTGAATCCAC
1 GGTTGCTAAGTGCTGATTCCAC
60150454 CGATAACAGT
Statistics
Matches: 77, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
33 41 0.53
34 4 0.05
36 2 0.03
37 1 0.01
39 2 0.03
40 2 0.03
42 3 0.04
43 22 0.29
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCACAAATCATTGGT
Found at i:60153382 original size:57 final size:57
Alignment explanation
Indices: 60153279--60153391 Score: 156
Period size: 57 Copynumber: 2.0 Consensus size: 57
60153269 AGGTGATCCT
* **
60153279 ATCTTGATATAGCCCTCCCGAAGAATATGTGTGAAAAAGATCTAGCCTGGACGGGTG
1 ATCTTAATATAGCCCTCCCGAAGAATATGTGTGAAAAAGATCTAGCCCAGACGGGTG
* * *
60153336 ATCTTAATATAGCCCTCCTGAAGAATATGTG-GAAAATGGATTTAGCCCAGACGGGT
1 ATCTTAATATAGCCCTCCCGAAGAATATGTGTGAAAA-AGATCTAGCCCAGACGGGT
60153392 AATTCGAATT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
56 5 0.10
57 44 0.90
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.26
Consensus pattern (57 bp):
ATCTTAATATAGCCCTCCCGAAGAATATGTGTGAAAAAGATCTAGCCCAGACGGGTG
Found at i:60154702 original size:3 final size:3
Alignment explanation
Indices: 60154694--60154759 Score: 73
Period size: 3 Copynumber: 21.7 Consensus size: 3
60154684 TTGTTATTTC
*
60154694 TAT TAT TAT TA- AAT TAGT T-T TAT TAT TAT TAT TAT TAT TAT TATT
1 TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TA-T
*
60154739 TAT TATT TAT TAT CAT TAT TA
1 TAT TA-T TAT TAT TAT TAT TA
60154760 GTTTTATTTG
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
2 3 0.06
3 43 0.80
4 8 0.15
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:60154718 original size:9 final size:8
Alignment explanation
Indices: 60154696--60154767 Score: 58
Period size: 9 Copynumber: 8.6 Consensus size: 8
60154686 GTTATTTCTA
60154696 TTATTATT
1 TTATTATT
**
60154704 AAATTAGTT
1 TTATTA-TT
60154713 TTATTATT
1 TTATTATT
60154721 ATTATTATT
1 -TTATTATT
60154730 ATTATTA-T
1 -TTATTATT
60154738 TTATTA-T
1 TTATTATT
*
60154745 TTATTATCA
1 TTATTAT-T
60154754 TTATTAGTT
1 TTATTA-TT
60154763 TTATT
1 TTATT
60154768 TGCCTATTTA
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
7 13 0.25
8 7 0.13
9 32 0.60
10 1 0.02
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.65
Consensus pattern (8 bp):
TTATTATT
Found at i:60155337 original size:12 final size:12
Alignment explanation
Indices: 60155316--60155347 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
60155306 TTTTATAGCC
*
60155316 TTATTCATTTCT
1 TTATTTATTTCT
60155328 TTATTTATTTCT
1 TTATTTATTTCT
60155340 TTATTTAT
1 TTATTTAT
60155348 ATTTTCATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.19, C:0.09, G:0.00, T:0.72
Consensus pattern (12 bp):
TTATTTATTTCT
Found at i:60157857 original size:28 final size:28
Alignment explanation
Indices: 60157819--60157916 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
60157809 ACAAAGTGAA
*
60157819 AATAACAATAAGCACCAAAGTGCAAAAT
1 AATAACGATAAGCACCAAAGTGCAAAAT
*
60157847 AATAACGATAAGCACCAAAGTGCAAATTTT
1 AATAACGATAAGCACCAAAGTGCAAA--AT
* *
60157877 TACAACGATAAGCACCAAAGTGCAAAAT
1 AATAACGATAAGCACCAAAGTGCAAAAT
60157905 AAT-ACGATAAGC
1 AATAACGATAAGC
60157917 GCACTAATTT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 9 0.15
28 27 0.44
30 25 0.41
ACGTcount: A:0.51, C:0.18, G:0.13, T:0.17
Consensus pattern (28 bp):
AATAACGATAAGCACCAAAGTGCAAAAT
Found at i:60157886 original size:30 final size:28
Alignment explanation
Indices: 60157810--60157916 Score: 125
Period size: 30 Copynumber: 3.9 Consensus size: 28
60157800 TCACTAAACA
60157810 CAAAGTG-AAAATAAC-A--ATAAGCAC
1 CAAAGTGCAAAATAACAACGATAAGCAC
*
60157834 CAAAGTGCAAAATAATAACGATAAGCAC
1 CAAAGTGCAAAATAACAACGATAAGCAC
* *
60157862 CAAAGTGCAAATTTTTACAACGATAAGCAC
1 CAAAGTGCAAA--ATAACAACGATAAGCAC
*
60157892 CAAAGTGCAAAATAA-TACGATAAGC
1 CAAAGTGCAAAATAACAACGATAAGC
60157917 GCACTAATTT
Statistics
Matches: 70, Mismatches: 7, Indels: 9
0.81 0.08 0.10
Matches are distributed among these distances:
24 7 0.10
25 7 0.10
26 1 0.01
27 9 0.13
28 21 0.30
30 25 0.36
ACGTcount: A:0.51, C:0.18, G:0.14, T:0.17
Consensus pattern (28 bp):
CAAAGTGCAAAATAACAACGATAAGCAC
Found at i:60159379 original size:2 final size:2
Alignment explanation
Indices: 60159374--60159420 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
60159364 TATATATATA
60159374 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
60159416 TG TG T
1 TG TG T
60159421 TCCTATGCTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:60162615 original size:21 final size:21
Alignment explanation
Indices: 60162589--60162629 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
60162579 ATCTGCTCAA
* *
60162589 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
60162610 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
60162630 TAGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:60180113 original size:6 final size:6
Alignment explanation
Indices: 60180102--60180134 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
60180092 CTGAAAAGCT
60180102 TTTTTA TTTTTA TTTTTA -TTTT- TTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
60180135 TTTATTGAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 8 0.32
6 17 0.68
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (6 bp):
TTTTTA
Found at i:60180135 original size:12 final size:12
Alignment explanation
Indices: 60180101--60180137 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
60180091 TCTGAAAAGC
60180101 TTTTTTATTTTT
1 TTTTTTATTTTT
*
60180113 ATTTTTA--TTT
1 TTTTTTATTTTT
60180123 TTTTTTATTTTT
1 TTTTTTATTTTT
60180135 TTT
1 TTT
60180138 ATTGAGGCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
10 9 0.43
12 12 0.57
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (12 bp):
TTTTTTATTTTT
Found at i:60184768 original size:13 final size:14
Alignment explanation
Indices: 60184740--60184772 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
60184730 ACTGCCGTAC
*
60184740 ATATATCTACCTGA
1 ATATATATACCTGA
60184754 ATATATATA-CTGA
1 ATATATATACCTGA
60184767 ATATAT
1 ATATAT
60184773 TCTCTATGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.39
Consensus pattern (14 bp):
ATATATATACCTGA
Found at i:60193589 original size:26 final size:26
Alignment explanation
Indices: 60193560--60193616 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
60193550 CCATTTTTTT
* *
60193560 AATAAACACCAAAAAAGTATTTTAAA
1 AATAAAAACAAAAAAAGTATTTTAAA
* *
60193586 AATAAAAAATAAAAAAATTATTTTAAA
1 AAT-AAAAACAAAAAAAGTATTTTAAA
60193613 AATA
1 AATA
60193617 TTTTAAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 4 0.15
27 22 0.85
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (26 bp):
AATAAAAACAAAAAAAGTATTTTAAA
Found at i:60193647 original size:8 final size:7
Alignment explanation
Indices: 60193621--60193645 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
60193611 AAAATATTTT
60193621 AAAATTA
1 AAAATTA
60193628 AAAATTA
1 AAAATTA
60193635 AAAATTA
1 AAAATTA
60193642 AAAA
1 AAAA
60193646 ATATATATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (7 bp):
AAAATTA
Found at i:60193951 original size:19 final size:20
Alignment explanation
Indices: 60193928--60193982 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
60193918 AATAAAATTT
*
60193928 ATAAAAATTATAAAAA-ATA
1 ATAAAAATTATAAAAATAGA
* *
60193947 TTAAATATTAATAAAAATAGA
1 ATAAAAATT-ATAAAAATAGA
*
60193968 AAAAAAATTATAAAA
1 ATAAAAATTATAAAA
60193983 TTTTATAAAG
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
19 7 0.25
20 13 0.46
21 8 0.29
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (20 bp):
ATAAAAATTATAAAAATAGA
Found at i:60194021 original size:21 final size:21
Alignment explanation
Indices: 60193997--60194052 Score: 62
Period size: 19 Copynumber: 2.8 Consensus size: 21
60193987 ATAAAGTCGT
60193997 AAGAAAATTATAAAAAAAGTA
1 AAGAAAATTATAAAAAAAGTA
***
60194018 AAG--AATTATAAAATCTGTA
1 AAGAAAATTATAAAAAAAGTA
*
60194037 AAAAAAATTATAAAAA
1 AAGAAAATTATAAAAA
60194053 TCATATTGCT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
19 15 0.54
21 13 0.46
ACGTcount: A:0.68, C:0.02, G:0.07, T:0.23
Consensus pattern (21 bp):
AAGAAAATTATAAAAAAAGTA
Found at i:60195432 original size:17 final size:17
Alignment explanation
Indices: 60195410--60195522 Score: 61
Period size: 17 Copynumber: 6.5 Consensus size: 17
60195400 CAGTAAATTT
60195410 TTTTTGAAACACAAATA
1 TTTTTGAAACACAAATA
** *
60195427 TTTTTGAAACA-ATTTTT
1 TTTTTGAAACACA-AATA
*
60195444 TTTTTGAAAACACGAAAAA
1 TTTTTG-AAACAC-AAATA
*
60195463 TTTTTAAAACACAAGA-A
1 TTTTTGAAACACAA-ATA
* * *
60195480 TTTTAGAGACACAAAAA
1 TTTTTGAAACACAAATA
**
60195497 TTCTTAAAAACACGAAAT-
1 TT-TTTGAAACAC-AAATA
60195515 TTTTTGAA
1 TTTTTGAA
60195523 GACGCGACGA
Statistics
Matches: 72, Mismatches: 16, Indels: 16
0.69 0.15 0.15
Matches are distributed among these distances:
16 2 0.03
17 39 0.54
18 22 0.31
19 8 0.11
20 1 0.01
ACGTcount: A:0.46, C:0.11, G:0.08, T:0.35
Consensus pattern (17 bp):
TTTTTGAAACACAAATA
Found at i:60195466 original size:36 final size:34
Alignment explanation
Indices: 60195407--60195473 Score: 98
Period size: 36 Copynumber: 1.9 Consensus size: 34
60195397 ATACAGTAAA
* *
60195407 TTTTTTTTGAAACACAAATATTTTTGAAACAATT
1 TTTTTTTTGAAACACAAAAATTTTTAAAACAATT
60195441 TTTTTTTTGAAAACACGAAAAATTTTTAAAACA
1 TTTTTTTTG-AAACAC-AAAAATTTTTAAAACA
60195474 CAAGAATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 9 0.31
35 6 0.21
36 14 0.48
ACGTcount: A:0.42, C:0.09, G:0.06, T:0.43
Consensus pattern (34 bp):
TTTTTTTTGAAACACAAAAATTTTTAAAACAATT
Found at i:60195688 original size:18 final size:18
Alignment explanation
Indices: 60195667--60195895 Score: 118
Period size: 18 Copynumber: 12.6 Consensus size: 18
60195657 TTTTTATCAT
60195667 CGAAATTTTTTGAAAACA
1 CGAAATTTTTTGAAAACA
*
60195685 CGAAATTTTTTG-TAACA
1 CGAAATTTTTTGAAAACA
*
60195702 CCAGAA-TTTTTGAAAACA
1 CGA-AATTTTTTGAAAACA
*
60195720 CGAGGA-TTTTTG-AAACA
1 CGA-AATTTTTTGAAAACA
* *
60195737 CGAAAATTTTTAAAAACA
1 CGAAATTTTTTGAAAACA
* *
60195755 CGGGAATTTTTTTAAAACA
1 C-GAAATTTTTTGAAAACA
* * *
60195774 TGAAAATTTTTGAAACCA
1 CGAAATTTTTTGAAAACA
*
60195792 TC-AGAA-TTTTTGAAGACA
1 -CGA-AATTTTTTGAAAACA
60195810 CGAAGA-TTTTTG-AAACA
1 CGAA-ATTTTTTGAAAACA
*
60195827 CTGTAATTTTTTTTTTGAAAACA
1 C-G-AA---ATTTTTTGAAAACA
* **
60195850 TGAAA-AATTTGAAAA-A
1 CGAAATTTTTTGAAAACA
* *
60195866 TGGAATTTTTTGAAAACA
1 CGAAATTTTTTGAAAACA
*
60195884 CAGGAATTTTTT
1 C-GAAATTTTTT
60195896 TTGAAAATAT
Statistics
Matches: 164, Mismatches: 29, Indels: 35
0.72 0.13 0.15
Matches are distributed among these distances:
16 6 0.04
17 48 0.29
18 68 0.41
19 28 0.17
21 2 0.01
22 7 0.04
23 5 0.03
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.35
Consensus pattern (18 bp):
CGAAATTTTTTGAAAACA
Found at i:60195825 original size:36 final size:35
Alignment explanation
Indices: 60195444--60195824 Score: 190
Period size: 35 Copynumber: 10.7 Consensus size: 35
60195434 AACAATTTTT
*
60195444 TTTTTGAAAACACGAAAAATTTTT-AAAACACAAGAA
1 TTTTTG-AAACACG-AAAATTTTTGAAAACACGAGAA
* * * * *
60195480 TTTTAGAGACACAAAAATTCTTAAAAACACGA-AA
1 TTTTTGAAACACGAAAATTTTTGAAAACACGAGAA
* ** * *
60195514 TTTTTTGAAGACGCGACGA-TTTTG-AGACATGAGAAA
1 -TTTTTGAA-ACACGAAAATTTTTGAAAACACGAG-AA
** * *** *
60195550 TTTTTTGAAA-ACGCGATTTTTTG-AAATGTGAAAA
1 -TTTTTGAAACACGAAAATTTTTGAAAACACGAGAA
* *
60195584 TTTGTGAAACAC-AAGAATTGTTGAAAACACGCA-AA
1 TTTTTGAAACACGAA-AATTTTTGAAAACACG-AGAA
* * * * * *
60195619 TTTTTGAAACATGGAAGTCTTTAGAAAACATGAAAAA
1 TTTTTGAAACACGAAAAT-TTTTGAAAACACG-AGAA
* * *
60195656 TTTTT-TATCATCGAAATTTTTTGAAAACACGA-AA
1 TTTTTGAAACA-CGAAAATTTTTGAAAACACGAGAA
* * * *
60195690 TTTTTTGTAACACCAGAATTTTTGAAAACACGAGGA
1 -TTTTTGAAACACGAAAATTTTTGAAAACACGAGAA
* *
60195726 TTTTTGAAACACGAAAATTTTTAAAAACACGGGAA
1 TTTTTGAAACACGAAAATTTTTGAAAACACGAGAA
* * *
60195761 TTTTTTTAAAACATGAAAATTTTTGAAACCATC-AGAA
1 --TTTTTGAAACACGAAAATTTTTGAAAACA-CGAGAA
*
60195798 TTTTTGAAGACACGAAGATTTTTGAAA
1 TTTTTGAA-ACACGAAAATTTTTGAAA
60195825 CACTGTAATT
Statistics
Matches: 258, Mismatches: 66, Indels: 42
0.70 0.18 0.11
Matches are distributed among these distances:
33 8 0.03
34 30 0.12
35 111 0.43
36 69 0.27
37 39 0.15
38 1 0.00
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32
Consensus pattern (35 bp):
TTTTTGAAACACGAAAATTTTTGAAAACACGAGAA
Found at i:60195925 original size:10 final size:10
Alignment explanation
Indices: 60195910--60195936 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
60195900 AAATATAAAT
60195910 TTTTTTTGAA
1 TTTTTTTGAA
60195920 TTTTTTTGAA
1 TTTTTTTGAA
60195930 TTTTTTT
1 TTTTTTT
60195937 CGTTTTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (10 bp):
TTTTTTTGAA
Found at i:60196065 original size:5 final size:5
Alignment explanation
Indices: 60196041--60196087 Score: 67
Period size: 5 Copynumber: 9.2 Consensus size: 5
60196031 TGCCTTATTT
* *
60196041 ATTAA AATAA TTTAAA ATTAA ATTAA ATTAA ATTAA ATTAA ATTAA A
1 ATTAA ATTAA ATT-AA ATTAA ATTAA ATTAA ATTAA ATTAA ATTAA A
60196088 AATATAAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
5 33 0.89
6 4 0.11
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
ATTAA
Found at i:60196278 original size:23 final size:21
Alignment explanation
Indices: 60196247--60196296 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 21
60196237 ATTAAACCCC
60196247 TTTTTTTCTTTTTTCCTTCT-CT
1 TTTTTTTCTTTTTT--TTCTCCT
60196269 TTTTTCTTCTTTTTTTTCTCCT
1 TTTTT-TTCTTTTTTTTCTCCT
60196291 TTTTTT
1 TTTTTT
60196297 CTCTCTGCTG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
21 5 0.19
22 12 0.46
23 9 0.35
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTTTTTCTTTTTTTTCTCCT
Found at i:60196282 original size:11 final size:11
Alignment explanation
Indices: 60196247--60196298 Score: 61
Period size: 12 Copynumber: 4.6 Consensus size: 11
60196237 ATTAAACCCC
60196247 TTTTT-TTCTT
1 TTTTTCTTCTT
*
60196257 TTTTCCTTCTCT
1 TTTTTCTTCT-T
60196269 TTTTTCTTCTTT
1 TTTTTCTTC-TT
*
60196281 TTTTTCTCCTT
1 TTTTTCTTCTT
60196292 TTTTTCT
1 TTTTTCT
60196299 CTCTGCTGGG
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
10 4 0.11
11 13 0.36
12 18 0.50
13 1 0.03
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTTTCTTCTT
Found at i:60196297 original size:23 final size:22
Alignment explanation
Indices: 60196245--60196298 Score: 76
Period size: 21 Copynumber: 2.5 Consensus size: 22
60196235 AAATTAAACC
60196245 CCTTTTTTTCTTTTTTCCTTCT
1 CCTTTTTTTCTTTTTTCCTTCT
*
60196267 CTTTTTTCTTCTTTTTT--TTCT
1 CCTTTTT-TTCTTTTTTCCTTCT
60196288 CCTTTTTTTCT
1 CCTTTTTTTCT
60196299 CTCTGCTGGG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 4 0.14
21 10 0.34
22 6 0.21
23 9 0.31
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (22 bp):
CCTTTTTTTCTTTTTTCCTTCT
Found at i:60196426 original size:17 final size:18
Alignment explanation
Indices: 60196386--60196433 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
60196376 CTGTTGGCCT
*
60196386 GCCCTTTTTTTCCATTGG
1 GCCCTTTTTTTGCATTGG
*
60196404 GCCCTTTTTTTGCTTTGG
1 GCCCTTTTTTTGCATTGG
60196422 G-CCTTGTTTTTG
1 GCCCTT-TTTTTG
60196434 TTTCTTTTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
17 4 0.15
18 23 0.85
ACGTcount: A:0.02, C:0.23, G:0.21, T:0.54
Consensus pattern (18 bp):
GCCCTTTTTTTGCATTGG
Found at i:60196600 original size:11 final size:11
Alignment explanation
Indices: 60196584--60196616 Score: 57
Period size: 11 Copynumber: 2.9 Consensus size: 11
60196574 TTTTTTCCCT
60196584 TTTCTTCTTTC
1 TTTCTTCTTTC
60196595 TTTCTTCTTTC
1 TTTCTTCTTTC
60196606 TTTCTCTCTTT
1 TTTCT-TCTTT
60196617 TTCTTCTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 16 0.76
12 5 0.24
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (11 bp):
TTTCTTCTTTC
Found at i:60197076 original size:29 final size:29
Alignment explanation
Indices: 60197004--60197141 Score: 168
Period size: 29 Copynumber: 4.7 Consensus size: 29
60196994 TTTGATAAAT
* *
60197004 TTTAGGGGTCAAAATGTAATTTTGAGAAAG
1 TTTAGGGGTCAAAATGTAA-TTTCAAAAAG
60197034 TTTAGGGGTCAAAATGTAATTTCAAAAAG
1 TTTAGGGGTCAAAATGTAATTTCAAAAAG
* * * *
60197063 TTTAGGGGTAAAAATATAATTTTAAAAAA
1 TTTAGGGGTCAAAATGTAATTTCAAAAAG
* * *
60197092 TTTAGAGATCAAAATGTAATTTCAAAAGG
1 TTTAGGGGTCAAAATGTAATTTCAAAAAG
* *
60197121 TTTAGGGGTAAAAATATAATT
1 TTTAGGGGTCAAAATGTAATT
60197142 AAAAAAATTG
Statistics
Matches: 91, Mismatches: 17, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
29 72 0.79
30 19 0.21
ACGTcount: A:0.43, C:0.04, G:0.20, T:0.33
Consensus pattern (29 bp):
TTTAGGGGTCAAAATGTAATTTCAAAAAG
Found at i:60197115 original size:58 final size:58
Alignment explanation
Indices: 60197004--60197150 Score: 206
Period size: 58 Copynumber: 2.5 Consensus size: 58
60196994 TTTGATAAAT
* * * * * *
60197004 TTTAGGGGTCAAAATGTAATTTTGAGAAAGTTTAGGGGTCAAAATGTAATTTCAAAAAG
1 TTTAGGGGTAAAAATATAATTTT-AAAAAATTTAGAGATCAAAATGTAATTTCAAAAAG
*
60197063 TTTAGGGGTAAAAATATAATTTTAAAAAATTTAGAGATCAAAATGTAATTTCAAAAGG
1 TTTAGGGGTAAAAATATAATTTTAAAAAATTTAGAGATCAAAATGTAATTTCAAAAAG
*
60197121 TTTAGGGGTAAAAATATAA-TTAAAAAAATT
1 TTTAGGGGTAAAAATATAATTTTAAAAAATT
60197151 GAGCCGGACA
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
57 10 0.12
58 49 0.61
59 21 0.26
ACGTcount: A:0.46, C:0.03, G:0.18, T:0.33
Consensus pattern (58 bp):
TTTAGGGGTAAAAATATAATTTTAAAAAATTTAGAGATCAAAATGTAATTTCAAAAAG
Found at i:60197533 original size:76 final size:78
Alignment explanation
Indices: 60197350--60197895 Score: 417
Period size: 78 Copynumber: 7.1 Consensus size: 78
60197340 TGATTTTTTT
* * * * * *
60197350 TTTTGAAAAACAGAAATATAAAAAAAATACCTCGGCATGT-ATCCAAGGCTCAACTCACTTCTCG
1 TTTTAAAAAACAGAAATTTAAAATAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCG
60197414 CAATATGAGTTGA
66 CAATATGAGTTGA
* * *
60197427 TTTAAAAAAAAAACAGAAA-TT--GA-AAATACCTCAG-A-GTGACCCGAGGCTCAACTCACCTC
1 TTT---TAAAAAACAGAAATTTAAAATAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTC
*
60197486 TCGCATTATGAGTTGA
63 TCGCAATATGAGTTGA
* * *
60197502 TTTTAAAAAATAGAAATTTAAAATAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCG
1 TTTTAAAAAACAGAAATTTAAAATAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCG
60197567 CAATATGAGTTGA
66 CAATATGAGTTGA
******* * * * * * * *
60197580 TTTGATTTTTTTTTAG-AAGTAAAAATTGAAAAATACATCGAC-T-TGACTCAATGCTCAACTCA
1 -TT--TTAAAAAACAGAAATTTAAAA-T---AAATACCTCGGCATGTGACCCGAGGCTCAACTCA
* *
60197642 CTTCTTGCAATATGAGTTGA
59 CCTCTCGCAATATGAGTTGA
* * * * *
60197662 TTTTTGCAAAAATAGGAATTT---A-AAATACCTCAGCATGCGACCCGAGGCTCAACTCACCTCT
1 -TTTT-AAAAAACAGAAATTTAAAATAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCT
*
60197723 CG-TA-ATGAGTTGA
64 CGCAATATGAGTTGA
* * * * *
60197736 TTTTTGAAAAACAGAAATTTAAAAGAAATACTTCGGCATGTG-TCGGAGGCTCAACTCACCTCTC
1 -TTTTAAAAAACAGAAATTTAAAATAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTC
*
60197800 GCAATATGAGCTGA
65 GCAATATGAGTTGA
* * * *
60197814 TTTAAAAAAAACAGAAATTAAAAAGAAATACCTCGGCATGTG-TCCGAGGCTCAACTCACCTCTC
1 TTT-TAAAAAACAGAAATTTAAAATAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTC
* *
60197878 GCAATATAAGTTAA
65 GCAATATGAGTTGA
60197892 TTTT
1 TTTT
60197896 TTTGAAAAAA
Statistics
Matches: 372, Mismatches: 69, Indels: 56
0.75 0.14 0.11
Matches are distributed among these distances:
72 11 0.03
73 14 0.04
74 25 0.07
75 40 0.11
76 62 0.17
77 22 0.06
78 115 0.31
79 4 0.01
80 20 0.05
81 9 0.02
82 39 0.10
83 1 0.00
84 10 0.03
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (78 bp):
TTTTAAAAAACAGAAATTTAAAATAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCG
CAATATGAGTTGA
Found at i:60197799 original size:234 final size:236
Alignment explanation
Indices: 60197289--60198877 Score: 959
Period size: 228 Copynumber: 6.9 Consensus size: 236
60197279 CAGAAATTGA
* * * * * *
60197289 AAATACCTCGCCGTGTGGCCCGAGGCTCAACTCACCTCTAGCATTATGAGTTGATTTTTTTTTTT
1 AAATACCTCGGCATGTGACCGGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTT
* *
60197354 GAAAAACAGAAATATAAAAAAAATACCTCGGCATGTATCCAAGGCTCAACTCACTTCTCGCAATA
66 GAAAAACAGAAATATAAAAAAAATACATCGACATGTATCCAAGGCTCAACTCACTTCTCGCAATA
*
60197419 TGAGTTGATTTAAAAAAAAAACAGAAATTGAAAATACCTCAGAGTGACCCGAGGCTCAACTCACC
131 TGAGTTGATTTAAAAAAAAAACAGAAATTGAAAATACCTCAGAGCGACCCGAGGCTCAACTCACC
* * *
60197484 TCTCGCATTATGAGTTGATTTTAAAAAATAGAAATTTAAAAT
196 TCTCG-ATAATGAGTTGATTTTAAAAAACAGAAATTTAAAAG
* *
60197526 AAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTGATTTTTT
1 AAATACCTCGGCATGTGACCGGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT--TTTTTT
* * ** ** * * *
60197591 TTTAGAAGTA-AAA-AT-TGAAAAATACATCGACTTG-A-CTCAATGCTCAACTCACTTCTTGCA
64 TTGAAAAACAGAAATATAAAAAAAATACATCGACATGTATC-CAAGGCTCAACTCACTTCTCGCA
**** * * *
60197651 ATATGAGTTGATTT-TTGCAAAAATAGGAATTTAAAATACCTCAGCATGCGACCCGAGGCTCAAC
128 ATATGAGTTGATTTAAAAAAAAAACAGAAATTGAAAATACCTCAG-A-GCGACCCGAGGCTCAAC
*
60197715 TCACCTCTCG-TAATGAGTTGATTTTTGAAAAACAGAAATTTAAAAG
191 TCACCTCTCGATAATGAGTTGA-TTTTAAAAAACAGAAATTTAAAAG
* * * **
60197761 AAATACTTCGGCATGTG-TCGGAGGCTCAACTCACCTCTCGCAATATGAGCTGA------TTTAA
1 AAATACCTCGGCATGTGACCGGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTT
* * * * * *
60197819 AAAAAACAGAAAT-TAAAAAGAAATACCTCGGCATGTGTCCGAGGCTCAACTCACCTCTCGCAAT
66 GAAAAACAGAAATATAAAAA-AAATACATCGACATGTATCCAAGGCTCAACTCACTTCTCGCAAT
* * **** * * * *
60197883 ATAAGTTAATTT--------TTTTGAAA---AAAATACCTCGGTGTGTGACCTGAGGCTCAACTC
130 ATGAGTTGATTTAAAAAAAAAACAGAAATTGAAAATACCTC--AGAGCGACCCGAGGCTCAACTC
* *
60197937 ACCTCTCGCA-ATATGAGTTGA---AAAAAAATAGAAA-TTAAAA-
193 ACCTCTCG-ATA-ATGAGTTGATTTTAAAAAACAGAAATTTAAAAG
* * * *
60197977 AAATACCTCGGCGTGTGGCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGA------TTTTT
1 AAATACCTCGGCATGTGACCGGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTT
* * * * * * *
60198036 GAAAAACAGAAATTTAAAAGAAATACCTCGGCATGTGTCCGAGGCTCAACTCACCTCTCGCAATA
66 GAAAAACAGAAATATAAAAAAAATACATCGACATGTATCCAAGGCTCAACTCACTTCTCGCAATA
* *** * * *
60198101 TGAGTTAATTT-TTGAAAAAACAGAAATTAAAAAGAAATACCTC-G-GCATATGTCCGAGGCTCA
131 TGAGTTGATTTAAAAAAAAAACAGAAATT---GA-AAATACCTCAGAGC-GA--CCCGAGGCTCA
* *
60198163 ACTCACCTCTTG-TAATATGAGTTGA-TTTAAATAAACAGAAA-TT--GA-
189 ACTCACCTCTCGAT-A-ATGAGTTGATTTTAAA-AAACAGAAATTTAAAAG
* * * *
60198208 AAATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTTGCATTATGAGTTGA-------TTTT
1 AAATACCTCGGCATGTGACCGGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTT
* * * * * * * * *
60198264 AAAAAACAGAAATTTAAAAGAAATACCTCGAAATGTGTCCGAGGCTCAACTTACCTCTCGCAATA
66 GAAAAACAGAAATATAAAAAAAATACATCGACATGTATCCAAGGCTCAACTCACTTCTCGCAATA
*** * * * ** *
60198329 TGAGTTGATTTTTTAAAAAAACGGAAATTGAAAAGTACCTCGGGATGTGGTCTGAGGCTCAACTC
131 TGAGTTGATTTAAAAAAAAAACAGAAATTGAAAA-TACCTC-AGA-GCGACCCGAGGCTCAACTC
* * * *
60198394 ACCTCTCGCA-ATATGAGTTGATTTTGAAAAATAGGAATTTAAAAA
193 ACCTCTCG-ATA-ATGAGTTGATTTTAAAAAACAGAAATTTAAAAG
* * * **
60198439 AAATACCTCGGTATGTGACCCGAGGCTCAACTCATCTCTCGCAATATGAGTTGA----TTTTTGA
1 AAATACCTCGGCATGTGACCGGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTT
* * * * * * * *
60198500 AAAAAACAGAAAT-T--GAAAAGTACCTCGACAAGTGAGCCGAGGCTCAACTCACCTCTCGCAAT
66 GAAAAACAGAAATATAAAAAAAATACATCGACATGT-ATCCAAGGCTCAACTCACTTCTCGCAAT
*** * *
60198562 ATGAGTTGATTT--TTGAAAAACAAAAATTGAAAAATACCTCAGCA-TGACCCGAGGCTCAACTC
130 ATGAGTTGATTTAAAAAAAAAACAGAAATTG-AAAATACCTCAG-AGCGACCCGAGGCTCAACTC
***
60198624 ACCTCTCGCA-ATAT-AGTTGATTTTTTTGAAA-A-AAATTTAAAAG
193 ACCTCTCG-ATA-ATGAGTTGA-TTTTAAAAAACAGAAATTTAAAAG
* * * *
60198667 AAATACCTCGACATGTGTCC-GAGGCCCAACTCATCTCTCGCAATATGAGTTGA------TTTTT
1 AAATACCTCGGCATGTGACCGGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTT
* * * * * * * * *
60198725 GAAAAACAGAAA-AT-TAAAAAATACCTCGGCGTGTGACCCGATGCTTAACTCACCTCTCGCAAT
66 GAAAAACAGAAATATAAAAAAAATACATCGACATGT-ATCCAAGGCTCAACTCACTTCTCGCAAT
*** * * * *
60198788 ATGAGTTGATTT--TTGAAAAACAGAAATTTAAAAGAAATACCTCGGCATGTGTCCCGAGGCTCA
130 ATGAGTTGATTTAAAAAAAAAACAGAAA-TT--GA-AAATACCTCAG-A-GCGACCCGAGGCTCA
*
60198851 ACTCACCTCTCG-CAATGAGTTGATTTT
189 ACTCACCTCTCGATAATGAGTTGATTTT
60198878 TTCAAAAATA
Statistics
Matches: 1125, Mismatches: 154, Indels: 154
0.79 0.11 0.11
Matches are distributed among these distances:
216 15 0.01
217 108 0.10
218 15 0.01
220 35 0.03
221 1 0.00
222 10 0.01
223 4 0.00
224 4 0.00
225 18 0.02
226 79 0.07
227 78 0.07
228 114 0.10
229 88 0.08
230 108 0.10
231 58 0.05
232 23 0.02
233 65 0.06
234 104 0.09
235 74 0.07
236 55 0.05
237 54 0.05
238 3 0.00
239 12 0.01
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (236 bp):
AAATACCTCGGCATGTGACCGGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTT
GAAAAACAGAAATATAAAAAAAATACATCGACATGTATCCAAGGCTCAACTCACTTCTCGCAATA
TGAGTTGATTTAAAAAAAAAACAGAAATTGAAAATACCTCAGAGCGACCCGAGGCTCAACTCACC
TCTCGATAATGAGTTGATTTTAAAAAACAGAAATTTAAAAG
Found at i:60198084 original size:78 final size:78
Alignment explanation
Indices: 60197960--60198878 Score: 1068
Period size: 78 Copynumber: 12.0 Consensus size: 78
60197950 TGAGTTGAAA
* * * *
60197960 AAAAATAGAAA-TTAAAA-AAATACCTCGGCGTGTGGCCCGAGGCTCAACTCACTTCTCGCAATA
1 AAAAACAGAAATTTAAAAGAAATACCTCGGCATGT-GTCCGAGGCTCAACTCACCTCTCGCAATA
60198023 TGAGTTGATTTTTG
65 TGAGTTGATTTTTG
60198037 AAAAACAGAAATTTAAAAGAAATACCTCGGCATGTGTCCGAGGCTCAACTCACCTCTCGCAATAT
1 AAAAACAGAAATTTAAAAGAAATACCTCGGCATGTGTCCGAGGCTCAACTCACCTCTCGCAATAT
*
60198102 GAGTTAATTTTTG
66 GAGTTGATTTTTG
* * * *
60198115 AAAAAACAGAAATTAAAAAGAAATACCTCGGCATATGTCCGAGGCTCAACTCACCTCTTGTAATA
1 -AAAAACAGAAATTTAAAAGAAATACCTCGGCATGTGTCCGAGGCTCAACTCACCTCTCGCAATA
*
60198180 TGAGTTGA--TTTA
65 TGAGTTGATTTTTG
* * * * *
60198192 AATAAACAGAAA-TT--GA-AAATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTTGCATT
1 AA-AAACAGAAATTTAAAAGAAATACCTCGGCATGTG-TCCGAGGCTCAACTCACCTCTCGCAAT
*
60198251 ATGAGTTGA-TTTTA
64 ATGAGTTGATTTTTG
** *
60198265 AAAAACAGAAATTTAAAAGAAATACCTCGAAATGTGTCCGAGGCTCAACTTACCTCTCGCAATAT
1 AAAAACAGAAATTTAAAAGAAATACCTCGGCATGTGTCCGAGGCTCAACTCACCTCTCGCAATAT
*
60198330 GAGTTGATTTTTTAA
66 GAGTTGA-TTTTT-G
* * * *
60198345 AAAAACGGAAATTGAAAAG---TACCTCGGGATGTGGTCTGAGGCTCAACTCACCTCTCGCAATA
1 AAAAACAGAAATTTAAAAGAAATACCTCGGCATGT-GTCCGAGGCTCAACTCACCTCTCGCAATA
60198407 TGAGTTGA-TTTTG
65 TGAGTTGATTTTTG
* * * * * *
60198420 AAAAATAGGAATTTAAAAAAAATACCTCGGTATGTGACCCGAGGCTCAACTCATCTCTCGCAATA
1 AAAAACAGAAATTTAAAAGAAATACCTCGGCATGTG-TCCGAGGCTCAACTCACCTCTCGCAATA
60198485 TGAGTTGATTTTTG
65 TGAGTTGATTTTTG
* * * *
60198499 AAAAAAACAGAAATTGAAAAG---TACCTCGACAAGTGAGCCGAGGCTCAACTCACCTCTCGCAA
1 --AAAAACAGAAATTTAAAAGAAATACCTCGGCATGTG-TCCGAGGCTCAACTCACCTCTCGCAA
60198561 TATGAGTTGATTTTTG
63 TATGAGTTGATTTTTG
* * * **
60198577 AAAAACA-AAAATT-GAA-AAATACCTCAGCATG-ACCCGAGGCTCAACTCACCTCTCGCAATAT
1 AAAAACAGAAATTTAAAAGAAATACCTCGGCATGTGTCCGAGGCTCAACTCACCTCTCGCAATAT
*
60198638 -AGTTGATTTTTT
66 GAGTTGATTTTTG
** * * *
60198650 TGAAA-A-AAATTTAAAAGAAATACCTCGACATGTGTCCGAGGCCCAACTCATCTCTCGCAATAT
1 AAAAACAGAAATTTAAAAGAAATACCTCGGCATGTGTCCGAGGCTCAACTCACCTCTCGCAATAT
60198713 GAGTTGATTTTTG
66 GAGTTGATTTTTG
* * * * *
60198726 AAAAACAGAAAATT-AAA-AAATACCTCGGCGTGTGACCCGATGCTTAACTCACCTCTCGCAATA
1 AAAAACAGAAATTTAAAAGAAATACCTCGGCATGTG-TCCGAGGCTCAACTCACCTCTCGCAATA
60198789 TGAGTTGATTTTTG
65 TGAGTTGATTTTTG
60198803 AAAAACAGAAATTTAAAAGAAATACCTCGGCATGTGTCCCGAGGCTCAACTCACCTCTCGC-A-A
1 AAAAACAGAAATTTAAAAGAAATACCTCGGCATGTGT-CCGAGGCTCAACTCACCTCTCGCAATA
60198866 TGAGTTGATTTTT
65 TGAGTTGATTTTT
60198879 TCAAAAATAA
Statistics
Matches: 720, Mismatches: 86, Indels: 72
0.82 0.10 0.08
Matches are distributed among these distances:
71 2 0.00
72 48 0.07
73 35 0.05
74 44 0.06
75 45 0.06
76 61 0.08
77 134 0.19
78 190 0.26
79 128 0.18
80 18 0.03
81 15 0.02
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (78 bp):
AAAAACAGAAATTTAAAAGAAATACCTCGGCATGTGTCCGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTG
Found at i:60199768 original size:1 final size:1
Alignment explanation
Indices: 60199758--60199855 Score: 52
Period size: 1 Copynumber: 98.0 Consensus size: 1
60199748 TTCATCTTGA
* * * * * * * * * * *
60199758 TTTTTCTTTTTCTTTTCTTTGTTTTTTTTGTTGTTTTTTGTTGTTTTTGTTTTTTGTTTTTTTAT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * *
60199823 TTTTTGTCTTTTTTGTTTTTTTGTCTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
60199856 AGACATAATA
Statistics
Matches: 65, Mismatches: 32, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
1 65 1.00
ACGTcount: A:0.01, C:0.05, G:0.10, T:0.84
Consensus pattern (1 bp):
T
Found at i:60199783 original size:16 final size:15
Alignment explanation
Indices: 60199782--60199853 Score: 90
Period size: 16 Copynumber: 4.5 Consensus size: 15
60199772 TTCTTTGTTT
60199782 TTTTTGTTGTTTTTTG
1 TTTTT-TTGTTTTTTG
60199798 TTGTTTTTGTTTTTTG
1 TT-TTTTTGTTTTTTG
*
60199814 TTTTTTTATTTTTTG
1 TTTTTTTGTTTTTTG
60199829 TCTTTTTTGTTTTTTTG
1 T-TTTTTTG-TTTTTTG
60199846 TCTTTTTT
1 T-TTTTTT
60199854 TTAGACATAA
Statistics
Matches: 51, Mismatches: 2, Indels: 5
0.88 0.03 0.09
Matches are distributed among these distances:
15 13 0.25
16 20 0.39
17 18 0.35
ACGTcount: A:0.01, C:0.03, G:0.12, T:0.83
Consensus pattern (15 bp):
TTTTTTTGTTTTTTG
Found at i:60199787 original size:9 final size:9
Alignment explanation
Indices: 60199764--60199854 Score: 77
Period size: 9 Copynumber: 10.6 Consensus size: 9
60199754 TTGATTTTTC
*
60199764 TTTTTCTTT
1 TTTTTGTTT
*
60199773 TCTTTGTTT
1 TTTTTGTTT
60199782 TTTTTGTTGT
1 TTTTTGTT-T
*
60199792 TTTTTGTTG
1 TTTTTGTTT
60199801 TTTTTG--T
1 TTTTTGTTT
60199808 TTTTTG--T
1 TTTTTGTTT
*
60199815 TTTTT-TAT
1 TTTTTGTTT
*
60199823 TTTTTGTCT
1 TTTTTGTTT
60199832 TTTTTG-TT
1 TTTTTGTTT
60199840 TTTTTGTCTT
1 TTTTTGT-TT
60199850 TTTTT
1 TTTTT
60199855 TAGACATAAT
Statistics
Matches: 69, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
7 12 0.17
8 13 0.19
9 28 0.41
10 16 0.23
ACGTcount: A:0.01, C:0.04, G:0.11, T:0.84
Consensus pattern (9 bp):
TTTTTGTTT
Found at i:60199855 original size:50 final size:50
Alignment explanation
Indices: 60199758--60199855 Score: 119
Period size: 50 Copynumber: 2.0 Consensus size: 50
60199748 TTCATCTTGA
* *
60199758 TTTTTCTTTTTCTTTTCTTTGTTTTTTTTGTTGTTTTTTGTTGTTTTTGT
1 TTTTTCTTTTTCTTTTCTTTGTCTTTTTTGTTGTTTTTTCTTGTTTTTGT
* * *
60199808 TTTTTGTTTTT-TTATTTTTTGTCTTTTTTGTT-TTTTTGTCTTTTTTTT
1 TTTTTCTTTTTCTT-TTCTTTGTCTTTTTTGTTGTTTTT-TCTTGTTTTT
60199856 AGACATAATA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
49 7 0.17
50 34 0.83
ACGTcount: A:0.01, C:0.05, G:0.10, T:0.84
Consensus pattern (50 bp):
TTTTTCTTTTTCTTTTCTTTGTCTTTTTTGTTGTTTTTTCTTGTTTTTGT
Found at i:60207410 original size:18 final size:18
Alignment explanation
Indices: 60207388--60207786 Score: 252
Period size: 18 Copynumber: 22.5 Consensus size: 18
60207378 CAATTATTTT
60207388 TTTTTGAAAACACGAAAAA
1 TTTTTGAAAACACG-AAAA
*
60207407 TTTTT-AAAACACGAGAA
1 TTTTTGAAAACACGAAAA
* * *
60207424 TTTTAG-AGACACAAAAA
1 TTTTTGAAAACACGAAAA
* *
60207441 TTATTAAAAACACGAAAA
1 TTTTTGAAAACACGAAAA
* * **
60207459 TTTTTGAAGACGCGACGA
1 TTTTTGAAAACACGAAAA
*
60207477 -TTTTG-AGACACGAGAAA
1 TTTTTGAAAACACGA-AAA
*
60207494 TTTTTTGAAAACGCG---A
1 -TTTTTGAAAACACGAAAA
** ***
60207510 TTTTTTTAAATGTGAAAA
1 TTTTTGAAAACACGAAAA
* *
60207528 TTTGTG-AAACACGAGAA
1 TTTTTGAAAACACGAAAA
*
60207545 TTGTTGAAAACACGAAAA
1 TTTTTGAAAACACGAAAA
*
60207563 TTTTTGAAAACACGCAAA
1 TTTTTGAAAACACGAAAA
* * *
60207581 TTTTTG-GAACACGGAAG
1 TTTTTGAAAACACGAAAA
*
60207598 TTTTTAGAAAATACGAAAAAA
1 TTTTT-GAAAACACG--AAAA
* *
60207619 TTTTT---ATCATCGAAAT
1 TTTTTGAAAACA-CGAAAA
60207635 TTTTTGAAAACACG-AAA
1 TTTTTGAAAACACGAAAA
* * *
60207652 TTTTTTAAAACACCAGAA
1 TTTTTGAAAACACGAAAA
* **
60207670 TTTTAGAAAACACGAGGA
1 TTTTTGAAAACACGAAAA
*
60207688 TTTTTG-AAATACGAAAA
1 TTTTTGAAAACACGAAAA
*
60207705 TTTTTGAAAACACGATAAT
1 TTTTTGAAAACACGA-AAA
* *
60207724 TTTTTTAAAACATGAAAA
1 TTTTTGAAAACACGAAAA
*
60207742 TTTTTGAAAACATCG-GAA
1 TTTTTGAAAACA-CGAAAA
* *
60207760 TTTTTGAAGACACGAAGA
1 TTTTTGAAAACACGAAAA
60207778 TTTTTGAAA
1 TTTTTGAAA
60207787 CACAGGAATT
Statistics
Matches: 286, Mismatches: 71, Indels: 47
0.71 0.18 0.12
Matches are distributed among these distances:
15 10 0.03
16 16 0.06
17 80 0.28
18 134 0.47
19 34 0.12
20 5 0.02
21 7 0.02
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.31
Consensus pattern (18 bp):
TTTTTGAAAACACGAAAA
Found at i:60207592 original size:35 final size:34
Alignment explanation
Indices: 60207388--60207800 Score: 244
Period size: 35 Copynumber: 11.6 Consensus size: 34
60207378 CAATTATTTT
* *
60207388 TTTTTGAAAACACGAAAAATTTTTAAAACACGAGAA
1 TTTTTGAAAACACG--AAATTTTTGAAACACGAAAA
* * * **
60207424 TTTTAG-AGACACAAAAATTATTAAAAACACGAAAA
1 TTTTTGAAAACAC-GAAATT-TTTGAAACACGAAAA
* * * *
60207459 TTTTTGAAGACGCGACGA-TTTTGAGACACGAGAAA
1 TTTTTGAAAACACGA-AATTTTTGAAACACGA-AAA
* * * ***
60207494 TTTTTTGAAAACGCG-ATTTTTTTAAATGTGAAAA
1 -TTTTTGAAAACACGAAATTTTTGAAACACGAAAA
* *
60207528 TTTGTG-AAACACGAGAATTGTTGAAAACACGAAAA
1 TTTTTGAAAACACGA-AATTTTTG-AAACACGAAAA
* * *
60207563 TTTTTGAAAACACGCAAATTTTTGGAACACGGAAG
1 TTTTTGAAAACACG-AAATTTTTGAAACACGAAAA
* * *
60207598 TTTTTAGAAAATACGAAAAAATTTTT--ATCATCGAAAT
1 TTTTT-GAAAACACG---AAATTTTTGAAACA-CGAAAA
* * *
60207635 TTTTTGAAAACACGAAATTTTTTAAAACACCAGAA
1 TTTTTGAAAACACGAAA-TTTTTGAAACACGAAAA
* * *
60207670 TTTTAGAAAACACGAGGATTTTTGAAATACGAAAA
1 TTTTTGAAAACACGA-AATTTTTGAAACACGAAAA
* *
60207705 TTTTTGAAAACACGATAATTTTTTTAAAACATGAAAA
1 TTTTTGAAAACACGA-AA--TTTTTGAAACACGAAAA
* *
60207742 TTTTTGAAAACATCGGAATTTTTGAAGACACGAAGA
1 TTTTTGAAAACA-CGAAATTTTTGAA-ACACGAAAA
* *
60207778 TTTTTGAAACACAGGAATTTTTT
1 TTTTTGAAA-ACACGAAATTTTT
60207801 TTTGAAAACA
Statistics
Matches: 290, Mismatches: 62, Indels: 50
0.72 0.15 0.12
Matches are distributed among these distances:
32 6 0.02
33 8 0.03
34 27 0.09
35 114 0.39
36 84 0.29
37 41 0.14
38 10 0.03
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.32
Consensus pattern (34 bp):
TTTTTGAAAACACGAAATTTTTGAAACACGAAAA
Found at i:60207797 original size:17 final size:17
Alignment explanation
Indices: 60207740--60207799 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 17
60207730 AAAACATGAA
60207740 AATTTTTGAAA-ACATCGG
1 AATTTTTGAAACACA--GG
*
60207758 AATTTTTGAAGACAC-GA
1 AATTTTTGAA-ACACAGG
60207775 AGATTTTTGAAACACAGG
1 A-ATTTTTGAAACACAGG
60207793 AATTTTT
1 AATTTTT
60207800 TTTTGAAAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
17 12 0.33
18 21 0.58
19 1 0.03
20 2 0.06
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (17 bp):
AATTTTTGAAACACAGG
Found at i:60207801 original size:55 final size:56
Alignment explanation
Indices: 60207635--60207811 Score: 127
Period size: 55 Copynumber: 3.2 Consensus size: 56
60207625 TCATCGAAAT
* * * * * * **
60207635 TTTTTGAAAACA-CGAAATTTTTTAAAACACCAGAA-TTTTAGAAAACACG-AGGA
1 TTTTTGAAAACATCGGAATTTTTGAAAACACGATAATTTTTTGAAAACAGGAATAA
* * * *
60207688 TTTTTG-AAATA-CGAAAATTTTTGAAAACACGATAATTTTTTTAAAACATGAA-AA
1 TTTTTGAAAACATCG-GAATTTTTGAAAACACGATAATTTTTTGAAAACAGGAATAA
* **
60207742 TTTTTGAAAACATCGGAATTTTTGAAGACACGA-AGA-TTTTTGAAACACAGGAATTTT
1 TTTTTGAAAACATCGGAATTTTTGAAAACACGATA-ATTTTTTGAAA-ACAGGAA-TAA
60207799 TTTTTGAAAACAT
1 TTTTTGAAAACAT
60207812 GAAAAATTTG
Statistics
Matches: 100, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
52 6 0.06
53 24 0.24
54 27 0.27
55 28 0.28
56 2 0.02
57 13 0.13
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.34
Consensus pattern (56 bp):
TTTTTGAAAACATCGGAATTTTTGAAAACACGATAATTTTTTGAAAACAGGAATAA
Found at i:60208029 original size:5 final size:5
Alignment explanation
Indices: 60208003--60208054 Score: 68
Period size: 5 Copynumber: 10.2 Consensus size: 5
60207993 TGCCTTATTT
* * *
60208003 ATTAA AATAA TTTAA ATAAA ATTAA ATTGAA ATTAA ATTAA ATTAA ATTAA
1 ATTAA ATTAA ATTAA ATTAA ATTAA ATT-AA ATTAA ATTAA ATTAA ATTAA
60208054 A
1 A
60208055 ACGATAAATA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
5 35 0.88
6 5 0.12
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (5 bp):
ATTAA
Found at i:60208230 original size:12 final size:12
Alignment explanation
Indices: 60208213--60208269 Score: 80
Period size: 12 Copynumber: 4.8 Consensus size: 12
60208203 AATTGAACCC
60208213 TTTTTTTCTT-T
1 TTTTTTTCTTCT
60208224 TTTTTTTCCTTCT
1 TTTTTTT-CTTCT
*
60208237 CTTTTTTCTTCT
1 TTTTTTTCTTCT
*
60208249 TTTTTTTCTCCT
1 TTTTTTTCTTCT
60208261 TTTTTTTCT
1 TTTTTTTCT
60208270 CTCTGCTGGG
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
11 7 0.17
12 27 0.66
13 7 0.17
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (12 bp):
TTTTTTTCTTCT
Found at i:60208514 original size:6 final size:6
Alignment explanation
Indices: 60208503--60208554 Score: 52
Period size: 6 Copynumber: 8.2 Consensus size: 6
60208493 AAAAAATTCA
*
60208503 TTTTCT TTTTCT TTTT-T TTTTCCC TTTTCT TCTTTCAT TCTTTCT TTTTCT
1 TTTTCT TTTTCT TTTTCT TTTT-CT TTTTCT T-TTTC-T T-TTTCT TTTTCT
60208554 T
1 T
60208555 CTCCTTCATT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
5 5 0.12
6 18 0.45
7 10 0.25
8 7 0.17
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (6 bp):
TTTTCT
Found at i:60208612 original size:24 final size:24
Alignment explanation
Indices: 60208580--60208626 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
60208570 CCCGACAGCG
*
60208580 CTTCCCCCAGTCTGGTGCAGTGGT
1 CTTCACCCAGTCTGGTGCAGTGGT
60208604 CTTCACCCAGTCTGGTGCAGTGG
1 CTTCACCCAGTCTGGTGCAGTGG
60208627 GCGCACGATG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.11, C:0.32, G:0.30, T:0.28
Consensus pattern (24 bp):
CTTCACCCAGTCTGGTGCAGTGGT
Done.