Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 214 of 221
Found at i:62712526 original size:132 final size:131
Alignment explanation
Indices: 62712257--62712628 Score: 523
Period size: 131 Copynumber: 2.8 Consensus size: 131
62712247 GTGCGAGTTA
* ** * * *
62712257 TAAAAAGATGGTATTTTTATTTTAGGCTTATCAATGATTTCAGGTTGCTTCTTGATAAAATCTAT
1 TAAAAAAATGGTAACTTTATTTTAGTCTTATCAATGATTTCAGGTTGCTTGTTGATAAAATCTTT
* *
62712322 CACTGT-CCTTGTTTTAGAAAAAAGGAAATTCCAGTGATGAATTCAAGTGCTAATCATGTAATTT
66 TACTTTCCCTT-TTTTA-AAAAAAGGAAATTCCAGTGATGAATTCAAGTGCTAATCATGTAATTT
62712386 GAT
129 GAT
* *
62712389 TAAAAAAATGGTAACTTTATTTTAGTCTTATCAATGATTTCAGGATGCTTGTTAATAAAATCTTT
1 TAAAAAAATGGTAACTTTATTTTAGTCTTATCAATGATTTCAGGTTGCTTGTTGATAAAATCTTT
* * * * *
62712454 TACTTTCCCTTTCTTT-ATAAGATGAAATTCTAGTGATGAATTCAAGTGCTAATCGTGTAATTTG
66 TACTTTCCCTTT-TTTAAAAAAAGGAAATTCCAGTGATGAATTCAAGTGCTAATCATGTAATTTG
62712518 AT
130 AT
*
62712520 TAAAAAAATGGTAACTTTATTTTAGTCTTATCAATGATTTCAGGTTGCTTGTTGATAAAATCTTG
1 TAAAAAAATGGTAACTTTATTTTAGTCTTATCAATGATTTCAGGTTGCTTGTTGATAAAATCTTT
*
62712585 TACTTTCCCTTTTTGTAGAAAAAAAGGAAATTCTAGTGATGAAT
66 TACTTTCCCTTTTT-T--AAAAAAAGGAAATTCCAGTGATGAAT
62712629 CCATAGTTAC
Statistics
Matches: 213, Mismatches: 21, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
130 2 0.01
131 120 0.56
132 62 0.29
133 7 0.03
134 22 0.10
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.41
Consensus pattern (131 bp):
TAAAAAAATGGTAACTTTATTTTAGTCTTATCAATGATTTCAGGTTGCTTGTTGATAAAATCTTT
TACTTTCCCTTTTTTAAAAAAAGGAAATTCCAGTGATGAATTCAAGTGCTAATCATGTAATTTGA
T
Found at i:62724116 original size:16 final size:17
Alignment explanation
Indices: 62724097--62724129 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
62724087 GAAAATAAAT
62724097 AAGAATATA-TCTAATC
1 AAGAATATATTCTAATC
62724113 AAGAATATATTCTAATC
1 AAGAATATATTCTAATC
62724130 TGCATTATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.48, C:0.12, G:0.06, T:0.33
Consensus pattern (17 bp):
AAGAATATATTCTAATC
Found at i:62743478 original size:22 final size:22
Alignment explanation
Indices: 62743453--62743514 Score: 55
Period size: 22 Copynumber: 3.1 Consensus size: 22
62743443 TGTTCATATT
62743453 TATTTTAGTTTATGTTCCACCG
1 TATTTTAGTTTATGTTCCACCG
* * *
62743475 TATTTAAGTTCATATT------
1 TATTTTAGTTTATGTTCCACCG
62743491 TATTTTAGTTTATGTTCCACCG
1 TATTTTAGTTTATGTTCCACCG
62743513 TA
1 TA
62743515 GTTGCAATGG
Statistics
Matches: 28, Mismatches: 6, Indels: 12
0.61 0.13 0.26
Matches are distributed among these distances:
16 13 0.46
22 15 0.54
ACGTcount: A:0.23, C:0.15, G:0.11, T:0.52
Consensus pattern (22 bp):
TATTTTAGTTTATGTTCCACCG
Found at i:62750517 original size:150 final size:149
Alignment explanation
Indices: 62750246--62750838 Score: 886
Period size: 150 Copynumber: 4.0 Consensus size: 149
62750236 TACTGTATTT
* *
62750246 GTATCCCTACAAATAAAACTAGATAATTGTGTTGAGTGTGAATTTACATGCTTAGCCTTGATATC
1 GTATCCCTACAAATAAAACTAGATACTTGTGTTGAGTGTGAATTTACATGATTAGCCTTGATA-C
* *
62750311 ATAAAAAAGTGATATTTTCTATTATTATTTTTTCAAGTATTTATGACCATATTTATTCTACGATC
65 ATAAAAAAGTGATATTTTCTATTATTATTTTTTTAAGTATTTATGACCATATTTATTTTACGATC
* *
62750376 CATGAAGATTAATCTTTCGA
130 CATGAAGACTAATCTTTCGG
*
62750396 GTATCCCTACAAATAAAACTAGATACTTGTGTTGAGTGTGAATTTACATTATTAGCCTTGATA-A
1 GTATCCCTACAAATAAAACTAGATACTTGTGTTGAGTGTGAATTTACATGATTAGCCTTGATACA
* * *
62750460 TAAAAAAGTGATATTTTCTATTATTATTAATATTAAAGTATTTATGACCATATTTATTTTATGAT
66 TAAAAAAGTGATATTTTCTATTATTATT--TTTTTAAGTATTTATGACCATATTTATTTTACGAT
* *
62750525 CCATGAAGACTAAATTTTTTGG
129 CCATGAAGACT-AATCTTTCGG
* *
62750547 GTATCCCTACAGATAAAACTAGATACTTGTGTTGGGTGTGAATTTACATGATTAGCCTTGATATC
1 GTATCCCTACAAATAAAACTAGATACTTGTGTTGAGTGTGAATTTACATGATTAGCCTTGATA-C
* *
62750612 ATAAAAAAGTGATATTTTCTATTATTATTTTTTTAAGTATTTATGATCATATTTATTTTACTATC
65 ATAAAAAAGTGATATTTTCTATTATTATTTTTTTAAGTATTTATGACCATATTTATTTTACGATC
*
62750677 CATGAAGGCTAATCTTTTCGG
130 CATGAAGACTAATC-TTTCGG
* * *
62750698 GTATCCCTACAAAT-AAACTAAATACTTGTGTTGAGTGTGAATTTACATTATTAGCCTTGATGTC
1 GTATCCCTACAAATAAAACTAGATACTTGTGTTGAGTGTGAATTTACATGATTAGCCTTGAT-AC
* * * *
62750762 ATAAAAAAGTGATATTTTCTATTATTA-TTTTTTAAGTATTTATGATCGTATTTATTTTATGGTC
65 ATAAAAAAGTGATATTTTCTATTATTATTTTTTTAAGTATTTATGACCATATTTATTTTACGATC
62750826 CATGAAGACTAAT
130 CATGAAGACTAAT
62750839 AGACCAATCT
Statistics
Matches: 404, Mismatches: 32, Indels: 15
0.90 0.07 0.03
Matches are distributed among these distances:
148 29 0.07
149 45 0.11
150 176 0.44
151 125 0.31
153 29 0.07
ACGTcount: A:0.33, C:0.11, G:0.13, T:0.42
Consensus pattern (149 bp):
GTATCCCTACAAATAAAACTAGATACTTGTGTTGAGTGTGAATTTACATGATTAGCCTTGATACA
TAAAAAAGTGATATTTTCTATTATTATTTTTTTAAGTATTTATGACCATATTTATTTTACGATCC
ATGAAGACTAATCTTTCGG
Found at i:62751532 original size:12 final size:13
Alignment explanation
Indices: 62751509--62751541 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
62751499 GTGTCTTATA
62751509 AAATATAATAAAT
1 AAATATAATAAAT
62751522 AAATA-AATAAAT
1 AAATATAATAAAT
*
62751534 AAAAATAA
1 AAATATAA
62751542 ATGAAAAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
AAATATAATAAAT
Found at i:62752129 original size:3 final size:3
Alignment explanation
Indices: 62752121--62752147 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
62752111 TTCTTTTGCT
62752121 TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC
62752148 ATCGTCATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:62752508 original size:31 final size:31
Alignment explanation
Indices: 62752459--62752523 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
62752449 CGGGAATTAA
*
62752459 ATATTTTCTATAATTTTTAAAAAGATTAAATT
1 ATATTTTCTATAATTTTTAAAAA-ATTAAAAT
*
62752491 ATATTTT-TATTATTTTTAAAAAATTAAAAT
1 ATATTTTCTATAATTTTTAAAAAATTAAAAT
62752521 ATA
1 ATA
62752524 AATTTATCCT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 10 0.32
31 14 0.45
32 7 0.23
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (31 bp):
ATATTTTCTATAATTTTTAAAAAATTAAAAT
Found at i:62752530 original size:30 final size:31
Alignment explanation
Indices: 62752471--62752530 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
62752461 ATTTTCTATA
* **
62752471 ATTTTTAAAAAGATTAAATTATATTTTTATT
1 ATTTTTAAAAAGATTAAAATATAAATTTATT
62752502 ATTTTTAAAAA-ATTAAAATATAAATTTAT
1 ATTTTTAAAAAGATTAAAATATAAATTTAT
62752531 CCTTATTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 15 0.58
31 11 0.42
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (31 bp):
ATTTTTAAAAAGATTAAAATATAAATTTATT
Found at i:62753155 original size:25 final size:26
Alignment explanation
Indices: 62753112--62753160 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
62753102 AGATAAGTAA
* *
62753112 ATTAATTTTTATAGTTAAA-AATTTC
1 ATTAATTTCTATAGATAAACAATTTC
*
62753137 ATTAATTTCTATCGATAAACAATT
1 ATTAATTTCTATAGATAAACAATT
62753161 GTTCTTTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.41, C:0.08, G:0.04, T:0.47
Consensus pattern (26 bp):
ATTAATTTCTATAGATAAACAATTTC
Found at i:62765268 original size:13 final size:13
Alignment explanation
Indices: 62765250--62765274 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62765240 CAAATCAAAG
62765250 TTCTTTTTTTCTT
1 TTCTTTTTTTCTT
62765263 TTCTTTTTTTCT
1 TTCTTTTTTTCT
62765275 CTCTTATCAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (13 bp):
TTCTTTTTTTCTT
Found at i:62766306 original size:109 final size:109
Alignment explanation
Indices: 62766115--62766314 Score: 316
Period size: 109 Copynumber: 1.8 Consensus size: 109
62766105 GCTATAAATA
*
62766115 GCATACCTGTAAAAGTGCAGCAATAGTACCAAAAGAATTCCACAACAATGGAGCCAAATCTTGAA
1 GCATACCTGTAAAAGTGCAGCAATAGTACCAAAAGAATTCCACAACAAAGGAGCCAAATCTTGAA
62766180 ATAATTCTCTCTTCTAAAAATAAAAACAAAAACAAGTTTATTAG
66 ATAATTCTCTCTTCTAAAAATAAAAACAAAAACAAGTTTATTAG
* *
62766224 GCATACCTG-AATGAGTGCAGCTATAGTACCAAAAGAATTCCAC-ACGAAAGGAGCCAAATCTTG
1 GCATACCTGTAA-AAGTGCAGCAATAGTACCAAAAGAATTCCACAAC-AAAGGAGCCAAATCTTG
*
62766287 AAATAATTC-CTTGTTCTAAAAATAAAAA
64 AAATAATTCTC-TCTTCTAAAAATAAAAA
62766315 GGTAGACGCT
Statistics
Matches: 84, Mismatches: 4, Indels: 6
0.89 0.04 0.06
Matches are distributed among these distances:
108 5 0.06
109 79 0.94
ACGTcount: A:0.45, C:0.18, G:0.14, T:0.23
Consensus pattern (109 bp):
GCATACCTGTAAAAGTGCAGCAATAGTACCAAAAGAATTCCACAACAAAGGAGCCAAATCTTGAA
ATAATTCTCTCTTCTAAAAATAAAAACAAAAACAAGTTTATTAG
Found at i:62767265 original size:113 final size:113
Alignment explanation
Indices: 62767127--62767347 Score: 334
Period size: 113 Copynumber: 2.0 Consensus size: 113
62767117 ATACCATGCA
* ** * * *
62767127 AGATATTGTGTAGATTGGTGAGAAGATTCTAAAATTTCAAGGCTCTAGATCGATCGTAATTAACA
1 AGATATAGTGTAGATCAGCGAGAAGATTCTAAAATTTCAAGGCTCTAGATCGATCATAATCAACA
62767192 TACTCTTAATTCAATCCAAACTTCTAACAATAACCGCTCTCAGACGCG
66 TACTCTTAATTCAATCCAAACTTCTAACAATAACCGCTCTCAGACGCG
* *
62767240 AGATATAGTGTAGATCAGCGAGAAGATTCTTAAATTTCAAGGCTCTAGATCGATTATAATCAACA
1 AGATATAGTGTAGATCAGCGAGAAGATTCTAAAATTTCAAGGCTCTAGATCGATCATAATCAACA
* * * *
62767305 TATTCTTAATTCAGTCCAAACTTCTAATAATAACCGCTTTCAG
66 TACTCTTAATTCAATCCAAACTTCTAACAATAACCGCTCTCAG
62767348 GTAGTCTTTT
Statistics
Matches: 96, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
113 96 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (113 bp):
AGATATAGTGTAGATCAGCGAGAAGATTCTAAAATTTCAAGGCTCTAGATCGATCATAATCAACA
TACTCTTAATTCAATCCAAACTTCTAACAATAACCGCTCTCAGACGCG
Found at i:62769626 original size:12 final size:13
Alignment explanation
Indices: 62769605--62769660 Score: 51
Period size: 13 Copynumber: 4.1 Consensus size: 13
62769595 TTAAATAAAT
62769605 TATATATTTAAAAA
1 TATAT-TTTAAAAA
62769619 TAT-TTTTAAAAA
1 TATATTTTAAAAA
*
62769631 TTGATATATTTTAAAA
1 -T-ATAT-TTTAAAAA
*
62769647 TATCTTTTAAAAA
1 TATATTTTAAAAA
62769660 T
1 T
62769661 TGATATTTCT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
12 8 0.23
13 10 0.29
14 8 0.23
15 2 0.06
16 7 0.20
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (13 bp):
TATATTTTAAAAA
Found at i:62769638 original size:28 final size:29
Alignment explanation
Indices: 62769601--62769666 Score: 109
Period size: 29 Copynumber: 2.3 Consensus size: 29
62769591 TTCCTTAAAT
62769601 AAATT-ATATATTTAAAAATAT-TTTTAA
1 AAATTGATATATTTAAAAATATCTTTTAA
*
62769628 AAATTGATATATTTTAAAATATCTTTTAA
1 AAATTGATATATTTAAAAATATCTTTTAA
62769657 AAATTGATAT
1 AAATTGATAT
62769667 TTCTTAATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 5 0.14
28 15 0.42
29 16 0.44
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (29 bp):
AAATTGATATATTTAAAAATATCTTTTAA
Found at i:62769673 original size:17 final size:16
Alignment explanation
Indices: 62769618--62769673 Score: 57
Period size: 16 Copynumber: 3.6 Consensus size: 16
62769608 ATATTTAAAA
62769618 ATATTTTTAAAAATTG
1 ATATTTTTAAAAATTG
62769634 ATATATTTT-AAAA-T-
1 ATAT-TTTTAAAAATTG
*
62769648 AT-CTTTTAAAAATTG
1 ATATTTTTAAAAATTG
62769663 ATATTTCTTAA
1 ATATTT-TTAA
62769674 TAAAATTGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 11
0.71 0.04 0.24
Matches are distributed among these distances:
12 4 0.12
13 4 0.12
14 3 0.09
15 3 0.09
16 10 0.31
17 8 0.25
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.50
Consensus pattern (16 bp):
ATATTTTTAAAAATTG
Found at i:62770927 original size:23 final size:23
Alignment explanation
Indices: 62770886--62770944 Score: 66
Period size: 27 Copynumber: 2.4 Consensus size: 23
62770876 TAGAGTAGGA
62770886 AAAAGAAAATGAAGTAAAAAATAAA-
1 AAAAGAAAATGAA--AAAAAA-AAAG
62770911 AAGGAAGAAAATGAAAAAAAAAAAG
1 AA--AAGAAAATGAAAAAAAAAAAG
62770936 AAAAGAAAA
1 AAAAGAAAA
62770945 AGAAGGGTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
23 7 0.23
24 3 0.10
25 10 0.32
27 11 0.35
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.07
Consensus pattern (23 bp):
AAAAGAAAATGAAAAAAAAAAAG
Found at i:62770929 original size:18 final size:17
Alignment explanation
Indices: 62770908--62770950 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
62770898 AGTAAAAAAT
62770908 AAAAAGGAAGAAAATGAA
1 AAAAAGGAAGAAAA-GAA
**
62770926 AAAAAAAAAGAAAAGAA
1 AAAAAGGAAGAAAAGAA
62770943 AAAGAAGG
1 AAA-AAGG
62770951 GTTTTTTTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (17 bp):
AAAAAGGAAGAAAAGAA
Found at i:62770939 original size:27 final size:27
Alignment explanation
Indices: 62770888--62770940 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
62770878 GAGTAGGAAA
* *
62770888 AAGAAAATGAAGTAAAAAATAAAAAGG
1 AAGAAAATGAAGAAAAAAAAAAAAAGG
62770915 AAGAAAATGAA-AAAAAAAAAGAAAAG
1 AAGAAAATGAAGAAAAAAAAA-AAAAG
62770941 AAAAAGAAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.08
Consensus pattern (27 bp):
AAGAAAATGAAGAAAAAAAAAAAAAGG
Found at i:62773047 original size:46 final size:46
Alignment explanation
Indices: 62772964--62773132 Score: 151
Period size: 46 Copynumber: 3.5 Consensus size: 46
62772954 TTGCACATAG
* * *
62772964 TCACATATCACATACCGAGGCCATAGCCCAGCCATGGTCTTATACGGA
1 TCACATATCAC--ACTGATGCCATAGCCCAGCTATGGTCTTATACGGA
* * *
62773012 TCACATATCACACTGATGCCATATCCCAGATATGGTCTTATACAGTA
1 TCACATATCACACTGATGCCATAGCCCAGCTATGGTCTTATAC-GGA
* *
62773059 GCACATATCACATTTCTCCGAAGCCATAGCCCAGCTATGGTCTTATACGGAAA
1 TCACATATCACA---CT--GATGCCATAGCCCAGCTATGGTCTTATACGG--A
* *
62773112 TCACATTTCACA-TGCTGCCAT
1 TCACATATCACACTGATGCCAT
62773133 GGTCCAACCA
Statistics
Matches: 98, Mismatches: 15, Indels: 17
0.75 0.12 0.13
Matches are distributed among these distances:
46 27 0.28
47 19 0.19
48 11 0.11
49 1 0.01
50 2 0.02
51 1 0.01
52 26 0.27
53 11 0.11
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (46 bp):
TCACATATCACACTGATGCCATAGCCCAGCTATGGTCTTATACGGA
Found at i:62773092 original size:52 final size:48
Alignment explanation
Indices: 62772965--62773109 Score: 161
Period size: 52 Copynumber: 3.0 Consensus size: 48
62772955 TGCACATAGT
* * *
62772965 CACATATCACA-TACCGAGGCCATAGCCCAGCCATGGTCTTATACGGAT
1 CACATATCACACT-CCGAAGCCATAGCCCAGCTATGGTCTTATACGGAG
* * * *
62773013 CACATATCACACT--GATGCCATATCCCAGATATGGTCTTATACAGTAG
1 CACATATCACACTCCGAAGCCATAGCCCAGCTATGGTCTTATAC-GGAG
62773060 CACATATCACATTTCTCCGAAGCCATAGCCCAGCTATGGTCTTATACGGA
1 CACATATCACA---CTCCGAAGCCATAGCCCAGCTATGGTCTTATACGGA
62773110 AATCACATTT
Statistics
Matches: 80, Mismatches: 10, Indels: 11
0.79 0.10 0.11
Matches are distributed among these distances:
46 25 0.31
47 13 0.16
48 11 0.14
49 1 0.01
50 2 0.03
51 2 0.03
52 26 0.32
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.25
Consensus pattern (48 bp):
CACATATCACACTCCGAAGCCATAGCCCAGCTATGGTCTTATACGGAG
Found at i:62775664 original size:30 final size:30
Alignment explanation
Indices: 62775612--62775708 Score: 99
Period size: 30 Copynumber: 3.2 Consensus size: 30
62775602 TTATGGAGCA
62775612 AAGATAAGAAGAAAACC-GAATAAAGAAATCC
1 AAGAT-AG-AGAAAACCAGAATAAAGAAATCC
*
62775643 AAGATAGAGAAACCCAGAATAAAGAAATCC
1 AAGATAGAGAAAACCAGAATAAAGAAATCC
* * * * *
62775673 -AGAATAAAGAGATCCAGGATAAAGAAACCC
1 AAG-ATAGAGAAAACCAGAATAAAGAAATCC
62775703 AAGATA
1 AAGATA
62775709 CGATACTATG
Statistics
Matches: 57, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
29 9 0.16
30 41 0.72
31 7 0.12
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGATAGAGAAAACCAGAATAAAGAAATCC
Found at i:62775668 original size:15 final size:15
Alignment explanation
Indices: 62775620--62775699 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
62775610 CAAAGATAAG
*
62775620 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
62775634 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
62775649 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
62775664 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
62775679 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
62775694 AAGAAA
1 AAGAAA
62775700 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:62775708 original size:15 final size:15
Alignment explanation
Indices: 62775631--62775708 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
62775621 AGAAAACCGA
62775631 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
62775646 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
62775660 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
62775675 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
62775691 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
62775706 ATA
1 ATA
62775709 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:62778996 original size:46 final size:46
Alignment explanation
Indices: 62778913--62779081 Score: 151
Period size: 46 Copynumber: 3.5 Consensus size: 46
62778903 TTGCACATAG
* * *
62778913 TCACATATCACATACCGAGGCCATAGCCCAGCCATGGTCTTATACGGA
1 TCACATATCAC--ACTGATGCCATAGCCCAGCTATGGTCTTATACGGA
* * *
62778961 TCACATATCACACTGATGCCATATCCCAGATATGGTCTTATACAGTA
1 TCACATATCACACTGATGCCATAGCCCAGCTATGGTCTTATAC-GGA
* *
62779008 GCACATATCACATTTCTCCGAAGCCATAGCCCAGCTATGGTCTTATACGGAAA
1 TCACATATCACA---CT--GATGCCATAGCCCAGCTATGGTCTTATACGG--A
* *
62779061 TCACATTTCACA-TGCTGCCAT
1 TCACATATCACACTGATGCCAT
62779082 GGTCCAACCA
Statistics
Matches: 98, Mismatches: 15, Indels: 17
0.75 0.12 0.13
Matches are distributed among these distances:
46 27 0.28
47 19 0.19
48 11 0.11
49 1 0.01
50 2 0.02
51 1 0.01
52 26 0.27
53 11 0.11
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (46 bp):
TCACATATCACACTGATGCCATAGCCCAGCTATGGTCTTATACGGA
Found at i:62779041 original size:52 final size:48
Alignment explanation
Indices: 62778914--62779058 Score: 161
Period size: 52 Copynumber: 3.0 Consensus size: 48
62778904 TGCACATAGT
* * *
62778914 CACATATCACA-TACCGAGGCCATAGCCCAGCCATGGTCTTATACGGAT
1 CACATATCACACT-CCGAAGCCATAGCCCAGCTATGGTCTTATACGGAG
* * * *
62778962 CACATATCACACT--GATGCCATATCCCAGATATGGTCTTATACAGTAG
1 CACATATCACACTCCGAAGCCATAGCCCAGCTATGGTCTTATAC-GGAG
62779009 CACATATCACATTTCTCCGAAGCCATAGCCCAGCTATGGTCTTATACGGA
1 CACATATCACA---CTCCGAAGCCATAGCCCAGCTATGGTCTTATACGGA
62779059 AATCACATTT
Statistics
Matches: 80, Mismatches: 10, Indels: 11
0.79 0.10 0.11
Matches are distributed among these distances:
46 25 0.31
47 13 0.16
48 11 0.14
49 1 0.01
50 2 0.03
51 2 0.03
52 26 0.32
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.25
Consensus pattern (48 bp):
CACATATCACACTCCGAAGCCATAGCCCAGCTATGGTCTTATACGGAG
Found at i:62789139 original size:22 final size:23
Alignment explanation
Indices: 62789100--62789145 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
62789090 CAAGTATTTC
* *
62789100 ACTACCATTTTCTTATTA-TATT
1 ACTACCATTTTATCATTATTATT
*
62789122 ACTACTATTTTATCATTATTATT
1 ACTACCATTTTATCATTATTATT
62789145 A
1 A
62789146 ATTTTAATAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.30, C:0.15, G:0.00, T:0.54
Consensus pattern (23 bp):
ACTACCATTTTATCATTATTATT
Found at i:62793462 original size:60 final size:60
Alignment explanation
Indices: 62793361--62793566 Score: 279
Period size: 60 Copynumber: 3.4 Consensus size: 60
62793351 CAAAGAAATA
* * * * **
62793361 TCAAGGACTAACTTAGAC-CAAAAAAAGTTTAGACCTCAATGTCAGAACAATTGCCAAGT
1 TCAAGGCCTAACTTGGACAAAAAAAAAGTTCAGACCTCAATGTGGGAACAATTGCCAAGT
* *
62793420 TCAAGGCTTAACTTGGACAAAAAAAAAATTCAGACCTCAATGTGGGAACAATTGCCAAGT
1 TCAAGGCCTAACTTGGACAAAAAAAAAGTTCAGACCTCAATGTGGGAACAATTGCCAAGT
* * *
62793480 TCAATGCCTAACTTGGACAAAAAAAAAGTTCAGACCTCAATGTGGGAACAATTGTCTAGT
1 TCAAGGCCTAACTTGGACAAAAAAAAAGTTCAGACCTCAATGTGGGAACAATTGCCAAGT
* *
62793540 TCAGGGCCTAATTTGGATCAAAAAAAA
1 TCAAGGCCTAACTTGGA-CAAAAAAAA
62793567 TTCAGGCCCC
Statistics
Matches: 129, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
59 15 0.12
60 105 0.81
61 9 0.07
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.23
Consensus pattern (60 bp):
TCAAGGCCTAACTTGGACAAAAAAAAAGTTCAGACCTCAATGTGGGAACAATTGCCAAGT
Found at i:62800320 original size:21 final size:21
Alignment explanation
Indices: 62800296--62800335 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
62800286 ATTTTTTTAA
* *
62800296 TCGAGTTGAGTTAAATAAAAC
1 TCGAGTCGAGCTAAATAAAAC
62800317 TCGAGTCGAGCTAAATAAA
1 TCGAGTCGAGCTAAATAAA
62800336 TTTGTTTGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.12, G:0.20, T:0.25
Consensus pattern (21 bp):
TCGAGTCGAGCTAAATAAAAC
Found at i:62805037 original size:10 final size:10
Alignment explanation
Indices: 62804990--62805040 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
62804980 TTTAAATTAA
*
62804990 GAATATTTTT
1 GAATTTTTTT
*
62805000 GAATTTTGTT
1 GAATTTTTTT
*
62805010 AAATTTATTATT
1 GAATTT-TT-TT
62805022 -AATTTTTTT
1 GAATTTTTTT
62805031 GAATTTTTTT
1 GAATTTTTTT
62805041 ATAAAGTATA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
9 2 0.06
10 24 0.71
11 6 0.18
12 2 0.06
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (10 bp):
GAATTTTTTT
Found at i:62817587 original size:24 final size:24
Alignment explanation
Indices: 62817560--62817636 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
62817550 ATTGATTGAA
*
62817560 TTAAAAATCAATAGTTAATTTTAT
1 TTAAAAATCAATAGTTAATTTAAT
** *
62817584 TTAAAATAT-ATATA-TCGA-TTAAA
1 TTAAAA-ATCA-ATAGTTAATTTAAT
* *
62817607 TTAAAAATCGATAGTTAATTTGAT
1 TTAAAAATCAATAGTTAATTTAAT
62817631 TTAAAA
1 TTAAAA
62817637 TATAGCAAAT
Statistics
Matches: 39, Mismatches: 9, Indels: 10
0.67 0.16 0.17
Matches are distributed among these distances:
22 5 0.13
23 11 0.28
24 18 0.46
25 5 0.13
ACGTcount: A:0.48, C:0.04, G:0.06, T:0.42
Consensus pattern (24 bp):
TTAAAAATCAATAGTTAATTTAAT
Found at i:62817664 original size:47 final size:47
Alignment explanation
Indices: 62817561--62817657 Score: 131
Period size: 47 Copynumber: 2.0 Consensus size: 47
62817551 TTGATTGAAT
* * * * * *
62817561 TAAAAATCAATAGTTAATTTTATTTAAAATATATATATCGATTAAAT
1 TAAAAATCGATAGTTAATTTGATTTAAAATATACAAATCAATTAAAA
62817608 TAAAAATCGATAGTTAATTTGATTTAAAATATAGCAAATCAATTAAAA
1 TAAAAATCGATAGTTAATTTGATTTAAAATATA-CAAATCAATTAAAA
62817656 TA
1 TA
62817658 TCATCGAGAA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
47 31 0.72
48 12 0.28
ACGTcount: A:0.51, C:0.05, G:0.06, T:0.38
Consensus pattern (47 bp):
TAAAAATCGATAGTTAATTTGATTTAAAATATACAAATCAATTAAAA
Found at i:62821958 original size:8 final size:9
Alignment explanation
Indices: 62821934--62821971 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
62821924 TTTATTATAT
62821934 ATATTTTTA
1 ATATTTTTA
62821943 ATATTTTTA
1 ATATTTTTA
*
62821952 ATATTTTAA
1 ATATTTTTA
62821961 AGT-TTTTTA
1 A-TATTTTTA
62821970 AT
1 AT
62821972 CGAATTGGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
8 1 0.04
9 24 0.92
10 1 0.04
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (9 bp):
ATATTTTTA
Found at i:62822586 original size:18 final size:19
Alignment explanation
Indices: 62822549--62822585 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
62822539 TTTTAAAACG
62822549 TATAAA-ATTTAGAATTTT
1 TATAAATATTTAGAATTTT
62822567 TATAAATATTTAGAATTTT
1 TATAAATATTTAGAATTTT
62822586 AAAAATGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (19 bp):
TATAAATATTTAGAATTTT
Found at i:62822591 original size:18 final size:20
Alignment explanation
Indices: 62822555--62822621 Score: 70
Period size: 19 Copynumber: 3.5 Consensus size: 20
62822545 AACGTATAAA
*
62822555 ATTTAGAATTTTTATAAAT-
1 ATTTAGAATTTTTAAAAATG
62822574 ATTTAGAA-TTTTAAAAATG
1 ATTTAGAATTTTTAAAAATG
* *
62822593 ATTTTA-AATTTTTGAAAATT
1 A-TTTAGAATTTTTAAAAATG
62822613 ATTT-GAATT
1 ATTTAGAATT
62822622 CTTTTGATAA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
18 9 0.22
19 18 0.44
20 14 0.34
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (20 bp):
ATTTAGAATTTTTAAAAATG
Found at i:62822605 original size:20 final size:20
Alignment explanation
Indices: 62822556--62822616 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
62822546 ACGTATAAAA
*
62822556 TTTAGAATTTTTATAAATA-
1 TTTAGAATTTTTAAAAATAT
62822575 TTTAGAA-TTTTAAAAATGAT
1 TTTAGAATTTTTAAAAAT-AT
*
62822595 TTTA-AATTTTTGAAAATTAT
1 TTTAGAATTTTT-AAAAATAT
62822615 TT
1 TT
62822617 GAATTCTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
18 9 0.25
19 10 0.28
20 12 0.33
21 5 0.14
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (20 bp):
TTTAGAATTTTTAAAAATAT
Found at i:62824607 original size:60 final size:60
Alignment explanation
Indices: 62824543--62826065 Score: 1274
Period size: 60 Copynumber: 25.4 Consensus size: 60
62824533 CATATATGGG
* *** *
62824543 GGTGGAGATTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGAGGAGGA
1 GGTGGTGATTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACTTGTATGGAGGTGGA
* *** * * * * *
62824603 GGTGGTGACTT-GTACACATATGGGGGTGGAGGTGGTGACTTGTACTGGTATGGAGGTGGT
1 GGTGGTGA-TTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACTTGTATGGAGGTGGA
* * * ** * * *
62824663 GGTGGTGATTCATACTTGTATAGAGGTGGAGGTGGTGACTCATATTTGTATGGAGGAGGT
1 GGTGGTGATTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACTTGTATGGAGGTGGA
* ** * * * * **
62824723 GGTGGTGACTT-GTACACGTATGGGGGTGGAGGTGGAGACTCATACTTGTATGGAGGTGGA
1 GGTGGTGA-TTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACTTGTATGGAGGTGGA
** *** ** * ** * *
62824783 GGTGGTGATTTGTACACATAACGAGGAGGAGGTGGTGACTCATACTTGTATGGAGGAGGT
1 GGTGGTGATTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACTTGTATGGAGGTGGA
* *** * * * * *
62824843 GGTGGTGACTT-GTACACATATGGGGGTGGAGGTGGTGACTTGTACTTGTATGGAGGAGGT
1 GGTGGTGA-TTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACTTGTATGGAGGTGGA
* *** * * * * *
62824903 GGTGGTGACTT-GTACACATATGGGGGTGGAGGTGGTGACTTGTACTTGTATGGAGGAGGT
1 GGTGGTGA-TTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACTTGTATGGAGGTGGA
* * * ** * *
62824963 GGTGGTGACTCATACTTGTATGGAGGTGGAGGTGGTGACTCATACTTGTATGGAGGAGGT
1 GGTGGTGATTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACTTGTATGGAGGTGGA
* ** * * * * **
62825023 GGTGGTGACTT-GTACACGTATGGGGGTGGAGGTGGAGACTCATACTTGTATGGAGGTGGA
1 GGTGGTGA-TTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACTTGTATGGAGGTGGA
* *** *
62825083 GGTGGTGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGTGGA
1 GGTGGTGATTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACTTGTATGGAGGTGGA
* ** * *
62825143 GGTGGTGACTT-GTACTTGTATGGAGGAGGTGGTGGTGACTCATACTTGTATGGAGGAGGT
1 GGTGGTGA-TTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACTTGTATGGAGGTGGA
* ** *
62825203 GGTGGTGACTT-GTACTTGTATGGAGGAGGTGGTGGTGACTTGTACACGTATGGGGGTGGA
1 GGTGGTGA-TTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACTTGTATGGAGGTGGA
* * * * * *** * *
62825263 GGTGGAGACTCATACTTGTATGGAGGTGGAGGTGGTGATTTGTACACATAAGGAGGAGGA
1 GGTGGTGATTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACTTGTATGGAGGTGGA
* ***
62825323 GGTGGTGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATAGG-GGTGGA
1 GGTGGTGATTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACTTGTAT-GGAGGTGGA
* **
62825383 GGTGGTGACTT-GTACTTGTATGGAGGAGGTGGTGGTGACTCATACTTGTATGGAGGTGGA
1 GGTGGTGA-TTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACTTGTATGGAGGTGGA
* * * ** * *
62825443 CGTGGTGACTCATACTTGTATGAAGGAGGTGGTGGTGACTTGTACGCGTATGGGGGTAGA
1 GGTGGTGATTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACTTGTATGGAGGTGGA
* * * * * *** * *
62825503 GGTGGAGACTCATACTTGTACGGAGGTGGAT-GTGGTGATTTGTACACATAAGGAGGAGGA
1 GGTGGTGATTCATACTTGTATGGAGGAGG-TGGTGGTGACTTGTACTTGTATGGAGGTGGA
* * *** *
62825563 GGTGGTGACTCATACTTGTATGGAGGAGGTGGTGGCGACTTGTACACATATGGGGGTGGA
1 GGTGGTGATTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACTTGTATGGAGGTGGA
* ** * *
62825623 GGTGGTGACTT-GTACTTGTATGGAGGAGGTGGTGGTGACTCATACTTGTATGGAGGAGGT
1 GGTGGTGA-TTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACTTGTATGGAGGTGGA
* **
62825683 GGTGGTGACTT-GTACTTGTATGGAGGAGGTGGTGGTGACTCATACTTGTATGGAGGTGGA
1 GGTGGTGA-TTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACTTGTATGGAGGTGGA
* * **
62825743 GGTTGTGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACGTATGGAGGTGGA
1 GGTGGTGATTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACTTGTATGGAGGTGGA
* * *** * *
62825803 GGTGGAGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGAGGA
1 GGTGGTGATTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACTTGTATGGAGGTGGA
* * * * * *
62825863 GGTGGCGACTCATACTTGTATGGAGGAGGTGGTGGCGACTTGTACATGTACGGGGGTGGA
1 GGTGGTGATTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACTTGTATGGAGGTGGA
* * * * *
62825923 GGAGGAGACTT-ATACTTATATGGAGGAGGTGGTGGTGACTTGTACATATATGGAGGTGGA
1 GGTGGTGA-TTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACTTGTATGGAGGTGGA
* * * * ** * *
62825983 GGTGGTGACTCGTACTTATAT-GACAGAGGTGGTAATGACTTGTACGTATATGGAGGTGGA
1 GGTGGTGATTCATACTTGTATGGA-GGAGGTGGTGGTGACTTGTACTTGTATGGAGGTGGA
* * *
62826043 GGTGATGACTCATACTTATATGG
1 GGTGGTGATTCATACTTGTATGG
62826066 CGGAAGCAAT
Statistics
Matches: 1245, Mismatches: 196, Indels: 43
0.84 0.13 0.03
Matches are distributed among these distances:
59 15 0.01
60 1215 0.98
61 15 0.01
ACGTcount: A:0.21, C:0.09, G:0.41, T:0.29
Consensus pattern (60 bp):
GGTGGTGATTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACTTGTATGGAGGTGGA
Found at i:62824680 original size:36 final size:34
Alignment explanation
Indices: 62824640--62825839 Score: 269
Period size: 30 Copynumber: 39.7 Consensus size: 34
62824630 GGAGGTGGTG
*
62824640 ACTTGTACTGGTATGGAGGTGGTGGTGGTGATTCAT
1 ACTTGTA-TGGTA-GGAGGTGGTGGTGGTGACTCAT
*
62824676 ACTTGTA---TA-GAGGTGGAGGTGGTGACTCAT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
* **
62824706 ATTTGTATGG-AGGA---GGTGGTGGTGACTTGT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
** * *
62824736 ACACGTAT-G--GG-GGTGGAGGTGGAGACTCAT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
* * **
62824766 ACTTGTA---T-GGAGGTGGAGGTGGTGATTTGT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
** * * * *
62824796 AC--ACAT--AACGAGGAGGAGGTGGTGACTCAT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
**
62824826 ACTTGTATGG-AGGA---GGTGGTGGTGACTTGT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
*** * **
62824856 ACACATAT-G--GG-GGTGGAGGTGGTGACTTGT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
**
62824886 ACTTGTATGG-AGGA---GGTGGTGGTGACTTGT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
*** * **
62824916 ACACATAT-G--GG-GGTGGAGGTGGTGACTTGT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
62824946 ACTTGTATGG-AGGA---GGTGGTGGTGACTCAT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
*
62824976 ACTTGTA---T-GGAGGTGGAGGTGGTGACTCAT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
**
62825006 ACTTGTATGG-AGGA---GGTGGTGGTGACTTGT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
** * *
62825036 ACACGTAT-G--GG-GGTGGAGGTGGAGACTCAT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
*
62825066 ACTTGTA---T-GGAGGTGGAGGTGGTGACTCAT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
**
62825096 ACTTGTATGG-AGGA---GGTGGTGGTGACTTGT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
*** * **
62825126 ACACATAT-G--GG-GGTGGAGGTGGTGACTTGT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
62825156 ACTTGTATGG-AGGA---GGTGGTGGTGACTCAT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
**
62825186 ACTTGTATGG-AGGA---GGTGGTGGTGACTTGT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
**
62825216 ACTTGTATGG-AGGA---GGTGGTGGTGACTTGT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
** * *
62825246 ACACGTAT-G--GG-GGTGGAGGTGGAGACTCAT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
* * **
62825276 ACTTGTA---T-GGAGGTGGAGGTGGTGATTTGT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
** * * *
62825306 AC--ACAT--AAGGAGGAGGAGGTGGTGACTCAT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
**
62825336 ACTTGTATGG-AGGA---GGTGGTGGTGACTTGT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
** * * **
62825366 AC--ACAT-ATAGG-GGTGGAGGTGGTGACTTGT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
62825396 ACTTGTATGG-AGGA---GGTGGTGGTGACTCAT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
**
62825426 ACTTGTA---T-GGAGGTGGACGTGGTGACTCAT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
* **
62825456 ACTTGTAT-G-A--AGGAGGTGGTGGTGACTTGT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
** * * *
62825486 ACGCGTAT-G--GG-GGTAGAGGTGGAGACTCAT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
* * **
62825516 ACTTGTA----CGGAGGTGGAT-GTGGTGATTTGT
1 ACTTGTATGGTAGGAGGTGG-TGGTGGTGACTCAT
** * * *
62825546 AC--ACAT--AAGGAGGAGGAGGTGGTGACTCAT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
* **
62825576 ACTTGTATGG-AGGA---GGTGGTGGCGACTTGT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
*** * **
62825606 ACACATAT-G--GG-GGTGGAGGTGGTGACTTGT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
62825636 ACTTGTATGG-AGGA---GGTGGTGGTGACTCAT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
**
62825666 ACTTGTATGG-AGGA---GGTGGTGGTGACTTGT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
62825696 ACTTGTATGG-AGGA---GGTGGTGGTGACTCAT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
* *
62825726 ACTTGTA---T-GGAGGTGGAGGTTGTGACTCAT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
**
62825756 ACTTGTATGG-AGGA---GGTGGTGGTGACTTGT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
** * *
62825786 ACACGTA---T-GGAGGTGGAGGTGGAGACTCAT
1 ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
62825816 ACTTGTATGG-AGGAGGTGGTGGTG
1 ACTTGTATGGTAGGAGGTGGTGGTG
62825840 ACTTGTACAC
Statistics
Matches: 874, Mismatches: 180, Indels: 223
0.68 0.14 0.17
Matches are distributed among these distances:
27 12 0.01
28 22 0.03
29 15 0.02
30 758 0.87
31 4 0.00
32 22 0.03
33 34 0.04
36 7 0.01
ACGTcount: A:0.20, C:0.09, G:0.41, T:0.29
Consensus pattern (34 bp):
ACTTGTATGGTAGGAGGTGGTGGTGGTGACTCAT
Found at i:62826014 original size:240 final size:240
Alignment explanation
Indices: 62824543--62826065 Score: 1621
Period size: 240 Copynumber: 6.3 Consensus size: 240
62824533 CATATATGGG
* *
62824543 GGTGGAGATTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGAGGAGGAGGTGG
1 GGTGGAGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGAGGTGGAGGTGG
** *** * * * *** * *
62824608 TGACTTGTACACATATGGGGGTGGAGGTGGTGACTTGTACTGGTATGGAGGTGGTGGTGGTGA-T
66 TGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGTGGAGGTGGTGACT
* * * * * * *
62824672 TCATACTTGTATAGAGGTGGAGGTGGTGACTCATATTTGTATGGAGGAGGTGGTGGTGACTTGTA
131 T-GTACTTGTATGGAGGAGGTGGTGGTGACTCATACTTGTATGGAGGAGGAGGTGGTGACTTATA
** * * * * ** **
62824737 CACGTATGGGGGTGGAGGTGGAGACTCATACTTGTATGGAGGTGGA
195 CTTGTATGGAGGAGGTGGTGGTGACTTGTACACGTATGGAGGTGGA
* * ** *** ** * ** *** * *
62824783 GGTGGTGATTTGTACACATAACGAGGAGGAGGTGGTGACTCATACTTGTATGGAGGAGGTGGTGG
1 GGTGGAGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGAGGTGGAGGTGG
** *** * * * *** * * *
62824848 TGACTTGTACACATATGGGGGTGGAGGTGGTGACTTGTACTTGTATGGAGGAGGTGGTGGTGACT
66 TGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGTGGAGGTGGTGACT
*** * * * ** * *
62824913 TGTACACATATGGGGGTGGAGGTGGTGACTTGTACTTGTATGGAGGAGGTGGTGGTGACTCATAC
131 TGTACTTGTATGGAGGAGGTGGTGGTGACTCATACTTGTATGGAGGAGGAGGTGGTGACTTATAC
* * ** ** * *
62824978 TTGTATGGAGGTGGAGGTGGTGACTCATACTTGTATGGAGGAGGT
196 TTGTATGGAGGAGGTGGTGGTGACTTGTACACGTATGGAGGTGGA
* ** ** * * * * ** ***
62825023 GGTGGTGACTTGTACACGTATGGGGGTGGAGGTGGAGACTCATACTTGTATGGAGGTGGAGGTGG
1 GGTGGAGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGAGGTGGAGGTGG
62825088 TGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGTGGAGGTGGTGACT
66 TGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGTGGAGGTGGTGACT
* *
62825153 TGTACTTGTATGGAGGAGGTGGTGGTGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTAC
131 TGTACTTGTATGGAGGAGGTGGTGGTGACTCATACTTGTATGGAGGAGGAGGTGGTGACTTATAC
*
62825218 TTGTATGGAGGAGGTGGTGGTGACTTGTACACGTATGGGGGTGGA
196 TTGTATGGAGGAGGTGGTGGTGACTTGTACACGTATGGAGGTGGA
* * * * *
62825263 GGTGGAGACTCATACTTGTATGGAGGTGGAGGTGGTGATTTGTACACATAAGGAGGAGGAGGTGG
1 GGTGGAGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGAGGTGGAGGTGG
*
62825328 TGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATAGGGGTGGAGGTGGTGACT
66 TGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGTGGAGGTGGTGACT
* * *
62825393 TGTACTTGTATGGAGGAGGTGGTGGTGACTCATACTTGTATGGAGGTGGACGTGGTGACTCATAC
131 TGTACTTGTATGGAGGAGGTGGTGGTGACTCATACTTGTATGGAGGAGGAGGTGGTGACTTATAC
* * * *
62825458 TTGTATGAAGGAGGTGGTGGTGACTTGTACGCGTATGGGGGTAGA
196 TTGTATGGAGGAGGTGGTGGTGACTTGTACACGTATGGAGGTGGA
* * * * *
62825503 GGTGGAGACTCATACTTGTACGGAGGTGGAT-GTGGTGATTTGTACACATAAGGAGGAGGAGGTG
1 GGTGGAGACTCATACTTGTATGGAGGAGG-TGGTGGTGACTTGTACACATATGGAGGTGGAGGTG
*
62825567 GTGACTCATACTTGTATGGAGGAGGTGGTGGCGACTTGTACACATATGGGGGTGGAGGTGGTGAC
65 GTGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGTGGAGGTGGTGAC
* *
62825632 TTGTACTTGTATGGAGGAGGTGGTGGTGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTA
130 TTGTACTTGTATGGAGGAGGTGGTGGTGACTCATACTTGTATGGAGGAGGAGGTGGTGACTTATA
** **
62825697 CTTGTATGGAGGAGGTGGTGGTGACTCATACTTGTATGGAGGTGGA
195 CTTGTATGGAGGAGGTGGTGGTGACTTGTACACGTATGGAGGTGGA
* * *
62825743 GGTTGTGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACGTATGGAGGTGGAGGTGG
1 GGTGGAGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGAGGTGGAGGTGG
* * *
62825808 AGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGAGGAGGTGGCGACT
66 TGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGTGGAGGTGGTGACT
** * ** * * * * * *
62825873 CATACTTGTATGGAGGAGGTGGTGGCGACTTGTACATGTACGGGGGTGGAGGAGGAGACTTATAC
131 TGTACTTGTATGGAGGAGGTGGTGGTGACTCATACTTGTATGGAGGAGGAGGTGGTGACTTATAC
* **
62825938 TTATATGGAGGAGGTGGTGGTGACTTGTACATATATGGAGGTGGA
196 TTGTATGGAGGAGGTGGTGGTGACTTGTACACGTATGGAGGTGGA
* * * * ** **
62825983 GGTGGTGACTCGTACTTATAT-GACAGAGGTGGTAATGACTTGTACGTATATGGAGGTGGAGGTG
1 GGTGGAGACTCATACTTGTATGGA-GGAGGTGGTGGTGACTTGTACACATATGGAGGTGGAGGTG
* *
62826047 ATGACTCATACTTATATGG
65 GTGACTCATACTTGTATGG
62826066 CGGAAGCAAT
Statistics
Matches: 1121, Mismatches: 158, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
239 3 0.00
240 1116 1.00
241 2 0.00
ACGTcount: A:0.21, C:0.09, G:0.41, T:0.29
Consensus pattern (240 bp):
GGTGGAGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGAGGTGGAGGTGG
TGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGTGGAGGTGGTGACT
TGTACTTGTATGGAGGAGGTGGTGGTGACTCATACTTGTATGGAGGAGGAGGTGGTGACTTATAC
TTGTATGGAGGAGGTGGTGGTGACTTGTACACGTATGGAGGTGGA
Found at i:62826095 original size:120 final size:120
Alignment explanation
Indices: 62824543--62826065 Score: 1412
Period size: 120 Copynumber: 12.7 Consensus size: 120
62824533 CATATATGGG
* * ** *
62824543 GGTGGAGATTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGAGGAGGAGGTGG
1 GGTGGTGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACATGTATGGAGGTGGAGGTGG
** *** * * * *** * *
62824608 TGACTTGTACACATATGGGGGTGGAGGTGGTGACTTGTACTGGTATGGAGGTGGT
66 TGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGTGGA
* * * * ** ** * *
62824663 GGTGGTGATTCATACTTGTATAGAGGTGGAGGTGGTGACTCATATTTGTATGGAGGAGGTGGTGG
1 GGTGGTGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACATGTATGGAGGTGGAGGTGG
** ** * * * * ** *** *
62824728 TGACTTGTACACGTATGGGGGTGGAGGTGGAGACTCATACTTGTATGGAGGTGGA
66 TGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGTGGA
* ** *** ** * ** * * *
62824783 GGTGGTGATTTGTACACATAACGAGGAGGAGGTGGTGACTCATACTTGTATGGAGGAGGTGGTGG
1 GGTGGTGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACATGTATGGAGGTGGAGGTGG
** *** * * * *** * * *
62824848 TGACTTGTACACATATGGGGGTGGAGGTGGTGACTTGTACTTGTATGGAGGAGGT
66 TGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGTGGA
** *** * * * * * *
62824903 GGTGGTGACTTGTACACATATGGGGGTGGAGGTGGTGACTTGTACTTGTATGGAGGAGGTGGTGG
1 GGTGGTGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACATGTATGGAGGTGGAGGTGG
* * ** *** * * *
62824968 TGACTCATACTTGTATGGAGGTGGAGGTGGTGACTCATACTTGTATGGAGGAGGT
66 TGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGTGGA
** ** * * * * ** *
62825023 GGTGGTGACTTGTACACGTATGGGGGTGGAGGTGGAGACTCATACTTGTATGGAGGTGGAGGTGG
1 GGTGGTGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACATGTATGGAGGTGGAGGTGG
62825088 TGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGTGGA
66 TGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGTGGA
** ** * * *
62825143 GGTGGTGACTTGTACTTGTATGGAGGAGGTGGTGGTGACTCATACTTGTATGGAGGAGGTGGTGG
1 GGTGGTGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACATGTATGGAGGTGGAGGTGG
** *
62825208 TGACTTGTACTTGTATGGAGGAGGTGGTGGTGACTTGTACACGTATGGGGGTGGA
66 TGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGTGGA
* * * * ** * *
62825263 GGTGGAGACTCATACTTGTATGGAGGTGGAGGTGGTGATTTGTACACATAAGGAGGAGGAGGTGG
1 GGTGGTGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACATGTATGGAGGTGGAGGTGG
*
62825328 TGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATAGGGGTGGA
66 TGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGTGGA
** ** * *
62825383 GGTGGTGACTTGTACTTGTATGGAGGAGGTGGTGGTGACTCATACTTGTATGGAGGTGGACGTGG
1 GGTGGTGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACATGTATGGAGGTGGAGGTGG
* * * *
62825448 TGACTCATACTTGTATGAAGGAGGTGGTGGTGACTTGTACGCGTATGGGGGTAGA
66 TGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGTGGA
* * * * ** * *
62825503 GGTGGAGACTCATACTTGTACGGAGGTGGAT-GTGGTGATTTGTACACATAAGGAGGAGGAGGTG
1 GGTGGTGACTCATACTTGTATGGAGGAGG-TGGTGGTGACTTGTACATGTATGGAGGTGGAGGTG
*
62825567 GTGACTCATACTTGTATGGAGGAGGTGGTGGCGACTTGTACACATATGGGGGTGGA
65 GTGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGTGGA
** ** * * *
62825623 GGTGGTGACTTGTACTTGTATGGAGGAGGTGGTGGTGACTCATACTTGTATGGAGGAGGTGGTGG
1 GGTGGTGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACATGTATGGAGGTGGAGGTGG
** ** *** *
62825688 TGACTTGTACTTGTATGGAGGAGGTGGTGGTGACTCATACTTGTATGGAGGTGGA
66 TGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGTGGA
* *
62825743 GGTTGTGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACGTATGGAGGTGGAGGTGG
1 GGTGGTGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACATGTATGGAGGTGGAGGTGG
* *
62825808 AGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGAGGA
66 TGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGTGGA
* * * * *
62825863 GGTGGCGACTCATACTTGTATGGAGGAGGTGGTGGCGACTTGTACATGTACGGGGGTGGAGGAGG
1 GGTGGTGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACATGTATGGAGGTGGAGGTGG
* * * * *
62825928 AGACTTATACTTATATGGAGGAGGTGGTGGTGACTTGTACATATATGGAGGTGGA
66 TGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGTGGA
* * * ** * *
62825983 GGTGGTGACTCGTACTTATAT-GACAGAGGTGGTAATGACTTGTACGTATATGGAGGTGGAGGTG
1 GGTGGTGACTCATACTTGTATGGA-GGAGGTGGTGGTGACTTGTACATGTATGGAGGTGGAGGTG
* *
62826047 ATGACTCATACTTATATGG
65 GTGACTCATACTTGTATGG
62826066 CGGAAGCAAT
Statistics
Matches: 1203, Mismatches: 197, Indels: 6
0.86 0.14 0.00
Matches are distributed among these distances:
119 3 0.00
120 1199 1.00
121 1 0.00
ACGTcount: A:0.21, C:0.09, G:0.41, T:0.29
Consensus pattern (120 bp):
GGTGGTGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACATGTATGGAGGTGGAGGTGG
TGACTCATACTTGTATGGAGGAGGTGGTGGTGACTTGTACACATATGGGGGTGGA
Found at i:62831620 original size:60 final size:60
Alignment explanation
Indices: 62831466--62831594 Score: 240
Period size: 60 Copynumber: 2.1 Consensus size: 60
62831456 GTTGTAAACA
62831466 TAAGGAGGAAGGCGTAAAAGAGATGGTGAAGGTGGAGATGGAGGTGGAGACTAGTAAATG
1 TAAGGAGGAAGGCGTAAAAGAGATGGTGAAGGTGGAGATGGAGGTGGAGACTAGTAAATG
* *
62831526 TAAGGAGGAAGGCGTAAAATAGATGGTGAAGGTGGAGGTGGAGGTGGAGACTAGTAAATG
1 TAAGGAGGAAGGCGTAAAAGAGATGGTGAAGGTGGAGATGGAGGTGGAGACTAGTAAATG
62831586 TAAGGAGGA
1 TAAGGAGGA
62831595 GGAGGTGATG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 67 1.00
ACGTcount: A:0.36, C:0.03, G:0.43, T:0.17
Consensus pattern (60 bp):
TAAGGAGGAAGGCGTAAAAGAGATGGTGAAGGTGGAGATGGAGGTGGAGACTAGTAAATG
Found at i:62831644 original size:48 final size:48
Alignment explanation
Indices: 62831562--62833261 Score: 1917
Period size: 48 Copynumber: 35.3 Consensus size: 48
62831552 TGAAGGTGGA
* * * ** * * *
62831562 GGTGGAGGTGGAGACTAGTAAATGTAAGGAGGAGGAGGTGATGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* * *
62831610 GGTGGAGGTGGTGACTTGTAGACATATGGTGGAGGTGGTGAGGAAAAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* * *
62831658 GGTGGAGGTGGGGACTTGTAGACATATGGTGGAGGTTGTGAGGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* *
62831706 GGTGGAGGTGGAGACTTGTAGACATATGGTGGAGGTGGTGAGGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* ** * *
62831754 GGTGGAGGTGGAGACTTGTAGATGTAAGGAGGAGGAGGTGAGGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
** * *
62831802 GGTGGAGGTGGTGACTTGTAGATGTAATGAGGAGGTGGTGAGGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* * *
62831850 GGTGGAGGTGGTGATTTGTAAACATAAGGTGGAGGTGGTGAAGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* * *
62831898 GGTGGAGGTGGGGACTTGTACACATAGGGTGGAGGTGGTGAGGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* * *
62831946 GGTGGAGGTGGGGACTTGTACACATAGGGTGGAGGTGGTGAGGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* * ** * *
62831994 AGTGGAAGTGGTGACTTGTAGATGTAAGGAGGAGGAGGTGAGGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* * ** *
62832042 AGTAGAGGTGGTGACTTGTAGATGTAAGGAGGAGGTGGTGAGGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
** * *
62832090 GGTGGAGGTGGTGACTTGTAGATGTAAGGAGGAGGTGGTAAGGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* * *
62832138 GGTGGAGGTGGTGATTTGTAAACATAAGGTGGAGGTGGTGAAGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* * * *
62832186 GGTGGAGGTGGGGACTTGTACACATAGGGTGGAGGAGGTGAGGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* ** *
62832234 GGTGGAGGTGGGGACTTGTAGATGTAAGGAGGAGGTGGTGAGGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* * * ** * *
62832282 GGTGAATGTGGTGACTTATAGATGTAAGGAGGAGGTGGTGAGAGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* *
62832330 GGTGGAGGTGGAGACTTGTAGACATATGGTGGAGGTGGTGAGGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* *
62832378 GGTGGAGGTGGAGACTTGTAGACATATGGTGGAGGTGGT-AGGGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGA-GGGAGAT
* ** * *
62832426 GGTGGAGGTGGAGACTTGTAGATGTAAGGAGGAGGAGGTGAGGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
** *
62832474 GGTGGAGGTGGTGACTTGTAGATGTAAGGAGGAGGTGGTGAGGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
** * *
62832522 GGTGGAGGTGGTGACTTGTAGATGTAAGGTGGAGGAGGTGAAGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* * *
62832570 GGTGGAGGTGGTGATTTGTAAACATAAGGTGGAGGTGGTGAAGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* * * *
62832618 GGTGGAGGTGGAGGTGGGGACTTGTACACATAGGGTGGAGGAGGTGAGGAAGAT
1 GGTGGAGGT---GGT---GACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* * * * *
62832672 GGTGGAGGTGGGGACTTGTAGACGTAGGGTGGGGGAGGTGAGGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* * * * * *
62832720 GGTGGAGGTGGGGACTTATAGACGTAAGGTGGGGGAGGTGAGGGAGAC
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* * *
62832768 GGTGGAGGTGGGGACTTGTAGACATAAGGAGGAGGTGGTGACGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* * * * *
62832816 GGAGGAGGTGGGGACTTGTAGACATAAGGTGGGGGAGGTGAAGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* * * * * * **
62832864 AGAGGAGGTGGGGACTTGTAGACATATGGTGGTGGAGGTGAATGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* * * * **
62832912 GGTGGAGGTGGAGACTTGTAAACATATGGTGGAGGAGGTGAATGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* * * * ** * *
62832960 GGTGGTGGTGGAGACTTATAAATGTAAGGAGGAGGTGGTGAGTGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* ** * *
62833008 GGTGGAGGTGGGGACTTGTAGATGTAAGGGGGAGGTGGTGAAGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* * * * **
62833056 GGTGGAGGTGGAGACTTGTAAACATAAGGAGGAGGAGGTGAATGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* * * *
62833104 GGTGGAGGTGGGGACTTATAGACATAAGGTGGAGGAGGTAAGGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* * ** * *
62833152 GGCGGAGGTGGAGACTTGTAGACATAAGGTGGAGGAAGTAAAGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
* * * *
62833200 GGTGGAGGTGGAGACTTGTAGACATATGGTGGAGGAGGTGAAGGAGAT
1 GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
*
62833248 GGTGGAGGAGGTGA
1 GGTGGAGGTGGTGA
62833262 ATGAGATGGT
Statistics
Matches: 1469, Mismatches: 175, Indels: 16
0.88 0.11 0.01
Matches are distributed among these distances:
47 1 0.00
48 1423 0.97
49 1 0.00
51 5 0.00
54 39 0.03
ACGTcount: A:0.26, C:0.04, G:0.49, T:0.21
Consensus pattern (48 bp):
GGTGGAGGTGGTGACTTGTAGACATAAGGTGGAGGTGGTGAGGGAGAT
Found at i:62832512 original size:27 final size:27
Alignment explanation
Indices: 62831706--62832610 Score: 163
Period size: 27 Copynumber: 37.5 Consensus size: 27
62831696 TGAGGGAGAT
* ** *
62831706 GGTGGAGGTGGAGACTTGTAGACATAT
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* *
62831733 GGTGGAGGTGGTGA---G-GGA-G-AT
1 GGTGGAGGTGGTGACTTGTAGATGTAA
*
62831754 GGTGGAGGTGGAGACTTGTAGATGTAA
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* * * *
62831781 GGAGGAGGAGGTGA---G-GGA-G-AT
1 GGTGGAGGTGGTGACTTGTAGATGTAA
62831802 GGTGGAGGTGGTGACTTGTAGATGTAA
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* * * *
62831829 TGAGGAGGTGGTGA---G-GGA-G-AT
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* * **
62831850 GGTGGAGGTGGTGATTTGTAAACATAA
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* *
62831877 GGTGGAGGTGGTGA--AG--GA-G-AT
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* * ** *
62831898 GGTGGAGGTGGGGACTTGTACACATAG
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* *
62831925 GGTGGAGGTGGTGA---G-GGA-G-AT
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* * ** *
62831946 GGTGGAGGTGGGGACTTGTACACATAG
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* *
62831973 GGTGGAGGTGGTGA--GGGAGA--T-A
1 GGTGGAGGTGGTGACTTGTAGATGTAA
*
62831995 -GTGGAAGTGGTGACTTGTAGATGTAA
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* * * *
62832021 GGAGGAGGAGGTGA--GGGAGA--T-A
1 GGTGGAGGTGGTGACTTGTAGATGTAA
*
62832043 -GTAGAGGTGGTGACTTGTAGATGTAA
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* * *
62832069 GGAGGAGGTGGTGA---G-GGA-G-AT
1 GGTGGAGGTGGTGACTTGTAGATGTAA
62832090 GGTGGAGGTGGTGACTTGTAGATGTAA
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* * * *
62832117 GGAGGAGGTGGT-A--AG-GGA-G-AT
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* * **
62832138 GGTGGAGGTGGTGATTTGTAAACATAA
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* *
62832165 GGTGGAGGTGGTGA--AG--GA-G-AT
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* * ** *
62832186 GGTGGAGGTGGGGACTTGTACACATAG
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* * *
62832213 GGTGGAGGAGGTGA---G-GGA-G-AT
1 GGTGGAGGTGGTGACTTGTAGATGTAA
*
62832234 GGTGGAGGTGGGGACTTGTAGATGTAA
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* * *
62832261 GGAGGAGGTGGTGA---G-GGA-G-AT
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* * *
62832282 GGTGAATGTGGTGACTTATAGATGTAA
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* *
62832309 GGAGGAGGTGGTGA---G-AGA-G-AT
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* ** *
62832330 GGTGGAGGTGGAGACTTGTAGACATAT
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* *
62832357 GGTGGAGGTGGTGA---G-GGA-G-AT
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* ** *
62832378 GGTGGAGGTGGAGACTTGTAGACATAT
1 GGTGGAGGTGGTGACTTGTAGATGTAA
** *
62832405 GGTGGAGGTGGT-A---GGGGA-G-AT
1 GGTGGAGGTGGTGACTTGTAGATGTAA
*
62832426 GGTGGAGGTGGAGACTTGTAGATGTAA
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* * * *
62832453 GGAGGAGGAGGTGA---G-GGA-G-AT
1 GGTGGAGGTGGTGACTTGTAGATGTAA
62832474 GGTGGAGGTGGTGACTTGTAGATGTAA
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* * *
62832501 GGAGGAGGTGGTGA---G-GGA-G-AT
1 GGTGGAGGTGGTGACTTGTAGATGTAA
62832522 GGTGGAGGTGGTGACTTGTAGATGTAA
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* * *
62832549 GGTGGAGGAGGTGA--AG--GA-G-AT
1 GGTGGAGGTGGTGACTTGTAGATGTAA
* * **
62832570 GGTGGAGGTGGTGATTTGTAAACATAA
1 GGTGGAGGTGGTGACTTGTAGATGTAA
62832597 GGTGGAGGTGGTGA
1 GGTGGAGGTGGTGA
62832611 AGGAGATGGT
Statistics
Matches: 617, Mismatches: 153, Indels: 216
0.63 0.16 0.22
Matches are distributed among these distances:
21 238 0.39
22 12 0.02
23 43 0.07
24 22 0.04
25 40 0.06
26 12 0.02
27 250 0.41
ACGTcount: A:0.25, C:0.03, G:0.50, T:0.22
Consensus pattern (27 bp):
GGTGGAGGTGGTGACTTGTAGATGTAA
Found at i:62832702 original size:27 final size:27
Alignment explanation
Indices: 62832624--62832703 Score: 64
Period size: 27 Copynumber: 3.2 Consensus size: 27
62832614 AGATGGTGGA
* *
62832624 GGTGGAGGTGGGGACTTGTACACATAG
1 GGTGGAGGTGGGGACTTGTAGACGTAG
* * * *
62832651 GGTGGAGGAGGTGA---G--GAAG-AT
1 GGTGGAGGTGGGGACTTGTAGACGTAG
62832672 GGTGGAGGTGGGGACTTGTAGACGTAG
1 GGTGGAGGTGGGGACTTGTAGACGTAG
62832699 GGTGG
1 GGTGG
62832704 GGGAGGTGAG
Statistics
Matches: 37, Mismatches: 10, Indels: 12
0.63 0.17 0.20
Matches are distributed among these distances:
21 13 0.35
22 1 0.03
24 2 0.05
26 3 0.08
27 18 0.49
ACGTcount: A:0.21, C:0.06, G:0.53, T:0.20
Consensus pattern (27 bp):
GGTGGAGGTGGGGACTTGTAGACGTAG
Found at i:62832729 original size:27 final size:26
Alignment explanation
Indices: 62832699--62832780 Score: 66
Period size: 27 Copynumber: 3.3 Consensus size: 26
62832689 GTAGACGTAG
62832699 GGTGGGGGAGGTGAGGGAGATGGTGGA
1 GGTGGGGGAGGTGAGGGAGA-GGTGGA
* * * * *
62832726 GGT-GGGGA-CTTA--TAGACGT-AA
1 GGTGGGGGAGGTGAGGGAGAGGTGGA
62832747 GGTGGGGGAGGTGAGGGAGACGGTGGA
1 GGTGGGGGAGGTGAGGGAGA-GGTGGA
62832774 GGTGGGG
1 GGTGGGG
62832781 ACTTGTAGAC
Statistics
Matches: 39, Mismatches: 10, Indels: 12
0.64 0.16 0.20
Matches are distributed among these distances:
21 4 0.10
22 7 0.18
23 5 0.13
25 5 0.13
26 7 0.18
27 11 0.28
ACGTcount: A:0.20, C:0.04, G:0.61, T:0.16
Consensus pattern (26 bp):
GGTGGGGGAGGTGAGGGAGAGGTGGA
Found at i:62832801 original size:27 final size:27
Alignment explanation
Indices: 62832771--62832844 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 27
62832761 GGGAGACGGT
62832771 GGAGGTGGGGACTTGTAGACATAAGGA
1 GGAGGTGGGGACTTGTAGACATAAGGA
* *
62832798 GGAGGTGGTGAC--G--GAGAT--GGA
1 GGAGGTGGGGACTTGTAGACATAAGGA
62832819 GGAGGTGGGGACTTGTAGACATAAGG
1 GGAGGTGGGGACTTGTAGACATAAGG
62832845 TGGGGGAGGT
Statistics
Matches: 37, Mismatches: 4, Indels: 12
0.70 0.08 0.23
Matches are distributed among these distances:
21 14 0.38
23 5 0.14
25 5 0.14
27 13 0.35
ACGTcount: A:0.27, C:0.07, G:0.49, T:0.18
Consensus pattern (27 bp):
GGAGGTGGGGACTTGTAGACATAAGGA
Found at i:62832913 original size:21 final size:21
Alignment explanation
Indices: 62832889--62832967 Score: 59
Period size: 21 Copynumber: 3.5 Consensus size: 21
62832879 TTGTAGACAT
62832889 ATGGTGGTGGAGGTGAATGAG
1 ATGGTGGTGGAGGTGAATGAG
* ** *
62832910 ATGGTGGAGGTGGAGACTTGTAAACAT
1 ATGGT---GGTGGAG--GTG-AATGAG
*
62832937 ATGGTGGAGGAGGTGAATGAG
1 ATGGTGGTGGAGGTGAATGAG
62832958 ATGGTGGTGG
1 ATGGTGGTGG
62832968 TGGAGACTTA
Statistics
Matches: 42, Mismatches: 10, Indels: 12
0.66 0.16 0.19
Matches are distributed among these distances:
21 17 0.40
22 2 0.05
24 13 0.31
26 2 0.05
27 8 0.19
ACGTcount: A:0.25, C:0.03, G:0.48, T:0.24
Consensus pattern (21 bp):
ATGGTGGTGGAGGTGAATGAG
Found at i:62832921 original size:24 final size:24
Alignment explanation
Indices: 62832894--62832972 Score: 65
Period size: 24 Copynumber: 3.3 Consensus size: 24
62832884 GACATATGGT
62832894 GGTGGAGGTGAATGAGATGGTGGA
1 GGTGGAGGTGAATGAGATGGTGGA
* ** *
62832918 GGTGGAGACTTGTAAACATATGGTGGA
1 GGTGGAG--GTG-AATGAGATGGTGGA
*
62832945 ---GGAGGTGAATGAGATGGTGGT
1 GGTGGAGGTGAATGAGATGGTGGA
62832966 GGTGGAG
1 GGTGGAG
62832973 ACTTATAAAT
Statistics
Matches: 40, Mismatches: 9, Indels: 12
0.66 0.15 0.20
Matches are distributed among these distances:
21 10 0.25
22 2 0.05
24 15 0.38
26 2 0.05
27 11 0.28
ACGTcount: A:0.25, C:0.03, G:0.49, T:0.23
Consensus pattern (24 bp):
GGTGGAGGTGAATGAGATGGTGGA
Found at i:62833231 original size:117 final size:117
Alignment explanation
Indices: 62833131--62833372 Score: 270
Period size: 117 Copynumber: 2.1 Consensus size: 117
62833121 ATAGACATAA
* * *
62833131 GGTGGAGGAGGT-AAGGGAGATGGCGGAGGTGGAGACTTGTAGACATAAGGTGGAGGAAGTAAAG
1 GGTGGAGGAGGTGAA-GGAGATGGCGGAGGTGGAGACTTATAAACATAAGGAGGAGGAAGTAAAG
* *
62833195 GAGATGGTGGAGGTGGAGACTTGTAGACATATGGTGGAGGAGGTGAAGGAGAT
65 GAGATGGTGGAGGTGGAGACTTGTAGACATATGGTGGAGGAGCTGAAGGACAT
* * * ** ** * *
62833248 GGTGGAGGAGGTGAATGAGATGGTGGTGGTGGAGACTTATAAATGTAAGGAGGAGGTGGTGAGGG
1 GGTGGAGGAGGTGAAGGAGATGGCGGAGGTGGAGACTTATAAACATAAGGAGGAGGAAGTAAAGG
* ** * * * * *
62833313 AGATGGTGGAGGTGGGGACTTGTAGTTATAAGGGGGAGGTGGTGAAGGAGAT
66 AGATGGTGGAGGTGGAGACTTGTAGACATATGGTGGAGGAGCTGAAGGACAT
62833365 GGTGGAGG
1 GGTGGAGG
62833373 TGGGGACTTG
Statistics
Matches: 106, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
117 104 0.98
118 2 0.02
ACGTcount: A:0.27, C:0.03, G:0.50, T:0.20
Consensus pattern (117 bp):
GGTGGAGGAGGTGAAGGAGATGGCGGAGGTGGAGACTTATAAACATAAGGAGGAGGAAGTAAAGG
AGATGGTGGAGGTGGAGACTTGTAGACATATGGTGGAGGAGCTGAAGGACAT
Found at i:62833249 original size:21 final size:21
Alignment explanation
Indices: 62833225--62833273 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
62833215 TTGTAGACAT
62833225 ATGGTGGAGGAGGTGAAGGAG
1 ATGGTGGAGGAGGTGAAGGAG
*
62833246 ATGGTGGAGGAGGTGAATGAG
1 ATGGTGGAGGAGGTGAAGGAG
62833267 ATGGTGG
1 ATGGTGG
62833274 TGGTGGAGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.27, C:0.00, G:0.55, T:0.18
Consensus pattern (21 bp):
ATGGTGGAGGAGGTGAAGGAG
Found at i:62833303 original size:69 final size:69
Alignment explanation
Indices: 62833179--62833324 Score: 184
Period size: 69 Copynumber: 2.1 Consensus size: 69
62833169 GTAGACATAA
* * * *
62833179 GGTGGAGGAAGTAAAGGAGATGGTGGAGGTGGAGACTTGTAGACATATGGTGGAGGAGGTGAAGG
1 GGTGGAGGAAGTAAAGGAGATGGTGGAGGTGGAGACTTATAAACATAAGGAGGAGGAGGTGAAGG
62833244 AGAT
66 AGAT
* * * * ** * *
62833248 GGTGGAGGAGGTGAATGAGATGGTGGTGGTGGAGACTTATAAATGTAAGGAGGAGGTGGTGAGGG
1 GGTGGAGGAAGTAAAGGAGATGGTGGAGGTGGAGACTTATAAACATAAGGAGGAGGAGGTGAAGG
62833313 AGAT
66 AGAT
62833317 GGTGGAGG
1 GGTGGAGG
62833325 TGGGGACTTG
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
69 65 1.00
ACGTcount: A:0.28, C:0.02, G:0.50, T:0.20
Consensus pattern (69 bp):
GGTGGAGGAAGTAAAGGAGATGGTGGAGGTGGAGACTTATAAACATAAGGAGGAGGAGGTGAAGG
AGAT
Found at i:62833309 original size:48 final size:48
Alignment explanation
Indices: 62833251--62833774 Score: 582
Period size: 48 Copynumber: 10.9 Consensus size: 48
62833241 AGGAGATGGT
* * * * * * **
62833251 GGAGGAGGTGAATGAGATGGTGGTGGTGGAGACTTATAAATGTAAGGA
1 GGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTGTAGACATAAGGA
* ** *
62833299 GGAGGTGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGTTATAAGGG
1 GGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTGTAGACATAAGGA
* *
62833347 GGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTGTAGACATATGGT
1 GGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTGTAGACATAAGGA
* * * * ** *
62833395 GGGGGAGGTGAAGGAGATGGTGGAGGTGGAGATTTGTAGATGTATGGA
1 GGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTGTAGACATAAGGA
* * * * **
62833443 GGAGGAGGTGAATGAGATGGTGGAGGAGGTGACTTGTAGATGTAAGGA
1 GGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTGTAGACATAAGGA
* * * *
62833491 GGTGGTGGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACATAGGGT
1 GGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTGTAGACATAAGGA
* * * * *
62833539 GGGGGAGGTGAGGGAGACGGTGGAGGTGGGGAGTTGTAGACATAAGGA
1 GGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTGTAGACATAAGGA
* *
62833587 GGAGGTGGTGACGGAGATGGTGGAGGTGGGGACTTGTAGACATAAGGT
1 GGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTGTAGACATAAGGA
* * * *
62833635 GGGGGTGGTG-AGGCAGATGGTGGAGGTGGCGACTTGTAGACATAGGGT
1 GGAGGTGGTGAAGG-AGATGGTGGAGGTGGGGACTTGTAGACATAAGGA
* * * * * **
62833683 GGTGGAGGTGAATGAGATGGTGGAGGTGGAGATTTGTAGATGTAAGGA
1 GGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTGTAGACATAAGGA
*
62833731 GGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTGTAGGCATA
1 GGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTGTAGACATA
62833775 GGATGGTGGT
Statistics
Matches: 403, Mismatches: 71, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
47 2 0.00
48 399 0.99
49 2 0.00
ACGTcount: A:0.24, C:0.03, G:0.51, T:0.22
Consensus pattern (48 bp):
GGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTGTAGACATAAGGA
Found at i:62833407 original size:165 final size:165
Alignment explanation
Indices: 62833086--62833420 Score: 508
Period size: 165 Copynumber: 2.0 Consensus size: 165
62833076 AACATAAGGA
* * *
62833086 GGAGGAGGTGAATGAGATGGTGGAGGTGGGGACTTATAGACATAAGGTGGAGGAGGTAAGGGAGA
1 GGAGGAGGTGAATGAGATGGTGGAGGTGGAGACTTATAAACATAAGGAGGAGGAGGTAAGGGAGA
*
62833151 TGGCGGAGGTGGAGACTTGTAGACATAAGGTGGAGGAAGTAAAGGAGATGGTGGAGGTGGAGACT
66 TGGCGGAGGTGGAGACTTGTAGACATAAGGGGGAGGAAGTAAAGGAGATGGTGGAGGTGGAGACT
62833216 TGTAGACATATGGTGGAGGAGGTGAAGGAGATGGT
131 TGTAGACATATGGTGGAGGAGGTGAAGGAGATGGT
* ** * *
62833251 GGAGGAGGTGAATGAGATGGTGGTGGTGGAGACTTATAAATGTAAGGAGGAGGTGGTGAGGGAGA
1 GGAGGAGGTGAATGAGATGGTGGAGGTGGAGACTTATAAACATAAGGAGGAGGAGGTAAGGGAGA
* * ** ** * *
62833316 TGGTGGAGGTGGGGACTTGTAGTTATAAGGGGGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACT
66 TGGCGGAGGTGGAGACTTGTAGACATAAGGGGGAGGAAGTAAAGGAGATGGTGGAGGTGGAGACT
*
62833381 TGTAGACATATGGTGGGGGAGGTGAAGGAGATGGT
131 TGTAGACATATGGTGGAGGAGGTGAAGGAGATGGT
62833416 GGAGG
1 GGAGG
62833421 TGGAGATTTG
Statistics
Matches: 152, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
165 152 1.00
ACGTcount: A:0.27, C:0.03, G:0.50, T:0.20
Consensus pattern (165 bp):
GGAGGAGGTGAATGAGATGGTGGAGGTGGAGACTTATAAACATAAGGAGGAGGAGGTAAGGGAGA
TGGCGGAGGTGGAGACTTGTAGACATAAGGGGGAGGAAGTAAAGGAGATGGTGGAGGTGGAGACT
TGTAGACATATGGTGGAGGAGGTGAAGGAGATGGT
Found at i:62833424 original size:213 final size:213
Alignment explanation
Indices: 62833038--62833474 Score: 633
Period size: 213 Copynumber: 2.1 Consensus size: 213
62833028 GATGTAAGGG
* * *
62833038 GGAGGTGGTGAAGGAGATGGTGGAGGTGGAGACTTGTAAACATAAGGAGGAGGAGGTGAATGAGA
1 GGAGGAGGTGAAGGAGATGGTGGAGGTGGAGACTTATAAACATAAGGAGGAGGAGGTGAAGGAGA
*
62833103 TGGTGGAGGTGGGGACTTATAGACATAAGGTGGAGGAGGTAAGGGAGATGGCGGAGGTGGAGACT
66 TGGTGGAGGTGGGGACTTATAGACATAAGGGGGAGGAGGTAAGGGAGATGGCGGAGGTGGAGACT
*
62833168 TGTAGACATAAGGTGGAGGAAGTAAAGGAGATGGTGGAGGTGGAGACTTGTAGACATATGGTGGA
131 TGTAGACATAAGGTGGAGGAAGTAAAGGAGATGGTGGAGGTGGAGACTTGTAGACATATGGAGGA
62833233 GGAGGTGAAGGAGATGGT
196 GGAGGTGAAGGAGATGGT
* * ** * *
62833251 GGAGGAGGTGAATGAGATGGTGGTGGTGGAGACTTATAAATGTAAGGAGGAGGTGGTGAGGGAGA
1 GGAGGAGGTGAAGGAGATGGTGGAGGTGGAGACTTATAAACATAAGGAGGAGGAGGTGAAGGAGA
* ** * * *
62833316 TGGTGGAGGTGGGGACTTGTAGTTATAAGGGGGAGGTGGTGAA-GGAGATGGTGGAGGTGGGGAC
66 TGGTGGAGGTGGGGACTTATAGACATAAGGGGGAGGAGGT-AAGGGAGATGGCGGAGGTGGAGAC
* * * * * **
62833380 TTGTAGACATATGGTGGGGGAGGTGAAGGAGATGGTGGAGGTGGAGATTTGTAGATGTATGGAGG
130 TTGTAGACATAAGGTGGAGGAAGTAAAGGAGATGGTGGAGGTGGAGACTTGTAGACATATGGAGG
*
62833445 AGGAGGTGAATGAGATGGT
195 AGGAGGTGAAGGAGATGGT
62833464 GGAGGAGGTGA
1 GGAGGAGGTGA
62833475 CTTGTAGATG
Statistics
Matches: 198, Mismatches: 25, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
213 196 0.99
214 2 0.01
ACGTcount: A:0.28, C:0.03, G:0.49, T:0.20
Consensus pattern (213 bp):
GGAGGAGGTGAAGGAGATGGTGGAGGTGGAGACTTATAAACATAAGGAGGAGGAGGTGAAGGAGA
TGGTGGAGGTGGGGACTTATAGACATAAGGGGGAGGAGGTAAGGGAGATGGCGGAGGTGGAGACT
TGTAGACATAAGGTGGAGGAAGTAAAGGAGATGGTGGAGGTGGAGACTTGTAGACATATGGAGGA
GGAGGTGAAGGAGATGGT
Found at i:62833466 original size:24 final size:24
Alignment explanation
Indices: 62833398--62833471 Score: 71
Period size: 24 Copynumber: 3.1 Consensus size: 24
62833388 ATATGGTGGG
* *
62833398 GGAGGTGAAGGAGATGGTGGAGGT
1 GGAGGTGAATGAGATGGTGGAGGA
* * *
62833422 GGAGAT--TTGTAGATGTATGGAGGA
1 GGAGGTGAATG-AGATG-GTGGAGGA
62833446 GGAGGTGAATGAGATGGTGGAGGA
1 GGAGGTGAATGAGATGGTGGAGGA
62833470 GG
1 GG
62833472 TGACTTGTAG
Statistics
Matches: 38, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
22 1 0.03
23 5 0.13
24 25 0.66
25 5 0.13
26 2 0.05
ACGTcount: A:0.27, C:0.00, G:0.53, T:0.20
Consensus pattern (24 bp):
GGAGGTGAATGAGATGGTGGAGGA
Found at i:62833806 original size:144 final size:142
Alignment explanation
Indices: 62831598--62833786 Score: 1502
Period size: 144 Copynumber: 15.0 Consensus size: 142
62831588 AGGAGGAGGA
* * * * * *
62831598 GGTGATGGAGATGGTGGAGGTGGTGACTTGTAGACATATGGTGGAGGTGGTG-AGGAAAATGGTG
1 GGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACATAGGGTGGGGGAGGTGAAGG-AGATGGTG
* * ** * * * * *
62831662 GAGGTGGGGACTTGTAGACATATGGTGGAGGTTGTGAGGGAGATGGTGGAGGTGGAGACTTGTAG
65 GAGGTGGAGATTTGTAGATGTAAGGAGGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTGTAG
* *
62831727 ACATATGG-TGGAGGT
130 GCATAAGGAT---GGT
* ** * * * *
62831742 GGTGAGGGAGATGGTGGAGGTGGAGACTTGTAGATGTAAGGAGGAGGAGGTGAGGGAGATGGTGG
1 GGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACATAGGGTGGGGGAGGTGAAGGAGATGGTGG
* * * * * * **
62831807 AGGTGGTGACTTGTAGATGTAATGAGGAGGTGGTGAGGGAGATGGTGGAGGTGGTGATTTGTAAA
66 AGGTGGAGATTTGTAGATGTAAGGAGGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTGTAGG
62831872 CATAAGG-TGGAGGT
131 CATAAGGAT---GGT
* * * * *
62831886 GGTGAAGGAGATGGTGGAGGTGGGGACTTGTACACATAGGGTGGAGGTGGTGAGGGAGATGGTGG
1 GGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACATAGGGTGGGGGAGGTGAAGGAGATGGTGG
* * * ** * * * * * * *
62831951 AGGTGGGGACTTGTACACATAGGGTGGAGGTGGTGAGGGAGATAGTGGAAGTGGTGACTTGTAGA
66 AGGTGGAGATTTGTAGATGTAAGGAGGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTGTAGG
** * *
62832016 TGTAAGGAGGAGGA
131 CATAAGGA--TGGT
* * * ** * * * * *
62832030 GGTGAGGGAGATAGTAGAGGTGGTGACTTGTAGATGTAAGGAGGAGGTGGTGAGGGAGATGGTGG
1 GGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACATAGGGTGGGGGAGGTGAAGGAGATGGTGG
* * * * *
62832095 AGGTGGTGACTTGTAGATGTAAGGAGGAGGTGGT-AAGGGAGATGGTGGAGGTGGTGATTTGTAA
66 AGGTGGAGATTTGTAGATGTAAGGAGGAGGTGGTGAA-GGAGATGGTGGAGGTGGGGACTTGTAG
*
62832159 ACATAAGG-TGGAGGT
130 GCATAAGGAT---GGT
* * * *
62832174 GGTGAAGGAGATGGTGGAGGTGGGGACTTGTACACATAGGGTGGAGGAGGTGAGGGAGATGGTGG
1 GGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACATAGGGTGGGGGAGGTGAAGGAGATGGTGG
* * * * * * * *
62832239 AGGTGGGGACTTGTAGATGTAAGGAGGAGGTGGTGAGGGAGATGGTGAATGTGGTGACTTATAGA
66 AGGTGGAGATTTGTAGATGTAAGGAGGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTGTAGG
** *
62832304 TGTAAGGAGGAGGT
131 CATAAGGA--TGGT
* * * * * *
62832318 GGTGAGAGAGATGGTGGAGGTGGAGACTTGTAGACATATGGTGGAGGTGGTGAGGGAGATGGTGG
1 GGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACATAGGGTGGGGGAGGTGAAGGAGATGGTGG
* ** * * * *
62832383 AGGTGGAGACTTGTAGACATATGGTGGAGGTGGT-AGGGGAGATGGTGGAGGTGGAGACTTGTAG
66 AGGTGGAGATTTGTAGATGTAAGGAGGAGGTGGTGA-AGGAGATGGTGGAGGTGGGGACTTGTAG
*** * *
62832447 ATGTAAGGAGGAGGA
130 GCATAAGGA--TGGT
* ** * * * * *
62832462 GGTGAGGGAGATGGTGGAGGTGGTGACTTGTAGATGTAAGGAGGAGGTGGTGAGGGAGATGGTGG
1 GGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACATAGGGTGGGGGAGGTGAAGGAGATGGTGG
* * * * * * **
62832527 AGGTGGTGACTTGTAGATGTAAGGTGGAGGAGGTGAAGGAGATGGTGGAGGTGGTGATTTGTAAA
66 AGGTGGAGATTTGTAGATGTAAGGAGGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTGTAGG
62832592 CATAAGG-TGGAGGT
131 CATAAGGAT---GGT
* * *
62832606 GGTGAAGGAGATGGTGGAGGTGGAGGTGGGGACTTGTACACATAGGGTGGAGGAGGTG-AGGAAG
1 GGTG-AGG-GA-GAT---GGTGGAGGTGGGGACTTGTAGACATAGGGTGGGGGAGGTGAAGG-AG
* * * * * * * *
62832670 ATGGTGGAGGTGGGGACTTGTAGACGTAGGGTGGGGGAGGTGAGGGAGATGGTGGAGGTGGGGAC
59 ATGGTGGAGGTGGAGATTTGTAGATGTAAGGAGGAGGTGGTGAAGGAGATGGTGGAGGTGGGGAC
* * * *
62832735 TTATAGACGTAAGG-TGGGGGA
124 TTGTAGGCATAAGGAT---GGT
* * * * * * *
62832756 GGTGAGGGAGACGGTGGAGGTGGGGACTTGTAGACATAAGGAGGAGGTGGTGACGGAGATGGAGG
1 GGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACATAGGGTGGGGGAGGTGAAGGAGATGGTGG
* * ** * * * * * *
62832821 AGGTGGGGACTTGTAGACATAAGGTGGGGGAGGTGAAGGAGATAGAGGAGGTGGGGACTTGTAGA
66 AGGTGGAGATTTGTAGATGTAAGGAGGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTGTAGG
*
62832886 CATATGG-TGGT
131 CATAAGGATGGT
** * * * * *
62832897 GGAGGTGAATGAGATGGTGGAGGTGGAGACTTGTAAACATATGGTGGAGGAGGTGAATGAGATGG
1 ---GGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACATAGGGTGGGGGAGGTGAAGGAGATGG
* * * *
62832962 TGGTGGTGGAGACTTATAAATGTAAGGAGGAGGTGGTG-AGTGAGATGGTGGAGGTGGGGACTTG
63 TGGAGGTGGAGATTTGTAGATGTAAGGAGGAGGTGGTGAAG-GAGATGGTGGAGGTGGGGACTTG
***
62833026 TAGATGTAAGGGGGA-GGT
127 TAGGCATAA---GGATGGT
* * * * * * *
62833044 GGTGAAGGAGATGGTGGAGGTGGAGACTTGTAAACATAAGGAGGAGGAGGTGAATGAGATGGTGG
1 GGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACATAGGGTGGGGGAGGTGAAGGAGATGGTGG
* * * ** * * * *
62833109 AGGTGGGGACTTATAGACATAAGGTGGAGGAGGT-AAGGGAGATGGCGGAGGTGGAGACTTGTAG
66 AGGTGGAGATTTGTAGATGTAAGGAGGAGGTGGTGAA-GGAGATGGTGGAGGTGGGGACTTGTAG
* *
62833173 ACATAAGG-TGGAG
130 GCATAAGGATGG-T
* * * * *
62833186 GAAGTAAAGGAGATGGTGGAGGTGGAGACTTGTAGACATATGGTGGAGGAGGTGAAGGAGATGGT
1 G--GTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACATAGGGTGGGGGAGGTGAAGGAGATGGT
* * * ** * * **
62833251 GGAGGAGGTGA-ATG-AGATGGTGGTGGTGGAGACTTATAAATGTAAGGAGGAGGTGGTGAGGGA
64 GGAGGTGGAGATTTGTAGAT-GT-AAGGAGGAG----GT-GGTG-AAGGA-GA--TGGT---GGA
* ** * * * * *
62833314 GATGGTGGAGGTG-GGGACTTGTAGTTATAAG-
115 GGTGG-GGACTTGTAGG-CAT-AAG-GAT-GGT
* * * * *
62833345 GGGGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTGTAGACATATGGTGGGGGAGGTGAAGGA
1 GGTGAGG-G-AGATGG-T-----GGAGGTGGGGACTTGTAGACATAGGGTGGGGGAGGTGAAGGA
* * * * *
62833410 GATGGTGGAGGTGGAGATTTGTAGATGTATGGAGGAGGAGGTGAATGAGATGGTGGAGGAGGTGA
58 GATGGTGGAGGTGGAGATTTGTAGATGTAAGGAGGAGGTGGTGAAGGAGATGGTGGAGGTGGGGA
***
62833475 CTTGTAGATGTAAGGAGGTGGT
123 CTTGTAGGCATAAGGA--TGGT
* *
62833497 GGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACATAGGGTGGGGGAGGTGAGGGAGACGGTGG
1 GGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACATAGGGTGGGGGAGGTGAAGGAGATGGTGG
* * ** * *
62833562 AGGTGGGGAGTTGTAGACATAAGGAGGAGGTGGTGACGGAGATGGTGGAGGTGGGGACTTGTAGA
66 AGGTGGAGATTTGTAGATGTAAGGAGGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTGTAGG
62833627 CATAAGG-TGGGGGT
131 CATAAGGAT---GGT
* * * *
62833641 GGTGAGGCAGATGGTGGAGGTGGCGACTTGTAGACATAGGGTGGTGGAGGTGAATGAGATGGTGG
1 GGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACATAGGGTGGGGGAGGTGAAGGAGATGGTGG
62833706 AGGTGGAGATTTGTAGATGTAAGGAGGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTGTAGG
66 AGGTGGAGATTTGTAGATGTAAGGAGGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTGTAGG
62833771 CAT-AGGATGGT
131 CATAAGGATGGT
62833782 GGTGA
1 GGTGA
62833787 TTGATATGGA
Statistics
Matches: 1678, Mismatches: 289, Indels: 159
0.79 0.14 0.07
Matches are distributed among these distances:
141 15 0.01
142 4 0.00
143 9 0.01
144 1362 0.81
145 10 0.01
146 2 0.00
147 8 0.00
148 2 0.00
149 6 0.00
150 121 0.07
151 8 0.00
152 12 0.01
153 10 0.01
156 12 0.01
157 9 0.01
158 5 0.00
159 9 0.01
160 3 0.00
161 1 0.00
165 62 0.04
166 4 0.00
167 4 0.00
ACGTcount: A:0.25, C:0.04, G:0.50, T:0.22
Consensus pattern (142 bp):
GGTGAGGGAGATGGTGGAGGTGGGGACTTGTAGACATAGGGTGGGGGAGGTGAAGGAGATGGTGG
AGGTGGAGATTTGTAGATGTAAGGAGGAGGTGGTGAAGGAGATGGTGGAGGTGGGGACTTGTAGG
CATAAGGATGGT
Found at i:62837970 original size:48 final size:48
Alignment explanation
Indices: 62837899--62838998 Score: 1153
Period size: 48 Copynumber: 22.8 Consensus size: 48
62837889 TTTAGTAATA
* * * * * *
62837899 TGGAGGTGGAGGCTTGTAGACATAAGGCGGAGGAGGAGAAAGAGAAGG
1 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTGAAGGAGATGG
* * * * *
62837947 TGGAGGTGGGGACTTGTACACATACGGTGGAGGTGGTGAGGGAGATGG
1 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTGAAGGAGATGG
62837995 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTGATA-GAGATGG
1 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTGA-AGGAGATGG
*
62838043 TGGAGGTGGAGACTTGTAAACATAAGGAGGAGGAGGTGAAGGAGATGG
1 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTGAAGGAGATGG
* * * * *
62838091 TGGAGGTGGGGACTTGTAGACATAGGGTGGAGGTGGTGAGGGAGATGG
1 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTGAAGGAGATGG
*
62838139 TGGAGGTGGAGACTTGTAAACATAAGGAGGAGGAGGTGAAGGAGATGG
1 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTGAAGGAGATGG
* * * * *
62838187 TGGAGGTGGGGACTTGTAAGCATAGGGTGGAGGTGGTGAGGGAGATGG
1 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTGAAGGAGATGG
*
62838235 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTGACGGAGATGG
1 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTGAAGGAGATGG
*
62838283 TGGAGGTGGAGACTTGTAAACATAAGGAGGAGGAGGTGAAGGAGATGG
1 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTGAAGGAGATGG
* * * * * * *
62838331 TGGAGGTGGGGACTTATAAACATAGGGTAGAGGTGGTGAGGGGGATGG
1 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTGAAGGAGATGG
* * *
62838379 TGGAGGTGGAGACTTGTAAACATAAGGAGGGGGAGGTGAATGAGATGG
1 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTGAAGGAGATGG
* * * *
62838427 TGGAGGTGGGGACTTGTAAACATAGGGTGGAGGTGGTGAGGGAGATGG
1 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTGAAGGAGATGG
* *
62838475 TGGAGGTGGAGACTTGTAGACATAATGTGGAGGAGGTGAAGGAGATGG
1 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTGAAGGAGATGG
* * * * * * *
62838523 CGGATGTGGAGACTTGTAGATATAGGGTGGAGGAGGAGAGGGAGATGG
1 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTGAAGGAGATGG
* * * *
62838571 CGGAGGTGGAGACTTGTAGACATAGGGTGGAGGTA-GTGAAGGTGATGG
1 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGG-AGGTGAAGGAGATGG
* * * * * * *
62838619 TGGTGGTGGGGACTTGTAGACATAGGGTGAAGGTGGTGAAGGTGATGGTGGTGG
1 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTGAA-G-GA----GATGG
* * * * * * * *
62838673 TGGTGGTGGAAACCTGTAAATATAAGGAGGAGGTGGAGAGGGAGATGG
1 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTGAAGGAGATGG
* *
62838721 TAGAGGTGGAGACTTGTAGACATAAGGTGGAGGAGGTGAAGGAGATGG
1 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTGAAGGAGATGG
* ** * * *
62838769 TGGAGGTGGTGACTTGTAGGCATAAGGCGGAGGTGGTGAAGGTGATGG
1 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTGAAGGAGATGG
* * * * * * * * *
62838817 TGGTGGTGGGGACTTATAAACATATGGAGGTGGTGGAGATGGAGATGG
1 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTGAAGGAGATGG
* * * * * * * * *
62838865 TGGTGGTGGGGACTTATAAACATATGGAGGTGGTGGAGATGGAGATGG
1 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTGAAGGAGATGG
* * * * * *
62838913 TGGAGGTGGGGACTTGTACACATAAGGAGGTGGAGG-GAAAGGAGAAGC
1 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTG-AAGGAGATGG
* * ** * *
62838961 TGGCGGTGGAGACTTATAGGCATACGGTGGTGGAGGTG
1 TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTG
62838999 GGGACTTGTA
Statistics
Matches: 896, Mismatches: 144, Indels: 23
0.84 0.14 0.02
Matches are distributed among these distances:
47 2 0.00
48 853 0.95
49 3 0.00
50 1 0.00
52 2 0.00
53 1 0.00
54 34 0.04
ACGTcount: A:0.27, C:0.05, G:0.48, T:0.20
Consensus pattern (48 bp):
TGGAGGTGGAGACTTGTAAACATAAGGTGGAGGAGGTGAAGGAGATGG
Found at i:62838023 original size:27 final size:27
Alignment explanation
Indices: 62837993--62838075 Score: 79
Period size: 27 Copynumber: 3.3 Consensus size: 27
62837983 TGAGGGAGAT
62837993 GGTGGAGGTGGAGACTTGTAAACATAA
1 GGTGGAGGTGGAGACTTGTAAACATAA
* * * *
62838020 GGTGGAGGAGGTGA----TAGAGAT--
1 GGTGGAGGTGGAGACTTGTAAACATAA
62838041 GGTGGAGGTGGAGACTTGTAAACATAA
1 GGTGGAGGTGGAGACTTGTAAACATAA
*
62838068 GGAGGAGG
1 GGTGGAGG
62838076 AGGTGAAGGA
Statistics
Matches: 41, Mismatches: 9, Indels: 12
0.66 0.15 0.19
Matches are distributed among these distances:
21 12 0.29
23 5 0.12
25 5 0.12
27 19 0.46
ACGTcount: A:0.31, C:0.05, G:0.45, T:0.19
Consensus pattern (27 bp):
GGTGGAGGTGGAGACTTGTAAACATAA
Found at i:62838263 original size:27 final size:27
Alignment explanation
Indices: 62838233--62838315 Score: 79
Period size: 27 Copynumber: 3.3 Consensus size: 27
62838223 TGAGGGAGAT
62838233 GGTGGAGGTGGAGACTTGTAAACATAA
1 GGTGGAGGTGGAGACTTGTAAACATAA
* * * *
62838260 GGTGGAGGAGGTGAC--G--GAGAT--
1 GGTGGAGGTGGAGACTTGTAAACATAA
62838281 GGTGGAGGTGGAGACTTGTAAACATAA
1 GGTGGAGGTGGAGACTTGTAAACATAA
*
62838308 GGAGGAGG
1 GGTGGAGG
62838316 AGGTGAAGGA
Statistics
Matches: 41, Mismatches: 9, Indels: 12
0.66 0.15 0.19
Matches are distributed among these distances:
21 13 0.32
23 4 0.10
25 4 0.10
27 20 0.49
ACGTcount: A:0.30, C:0.06, G:0.46, T:0.18
Consensus pattern (27 bp):
GGTGGAGGTGGAGACTTGTAAACATAA
Found at i:62838602 original size:27 final size:26
Alignment explanation
Indices: 62838425--62838604 Score: 66
Period size: 27 Copynumber: 7.3 Consensus size: 26
62838415 TGAATGAGAT
* *
62838425 GGTGGAGGTGGGGACTTGTAAACATA
1 GGTGGAGGTGGAGACTTGTAGACATA
* * *
62838451 GGGTGGAGGTGGTGA---G-GGAGAT-
1 -GGTGGAGGTGGAGACTTGTAGACATA
62838473 GGTGGAGGTGGAGACTTGTAGACATAA
1 GGTGGAGGTGGAGACTTGTAGACAT-A
* * * * *
62838500 TGTGGAGGAGGTGA--AG--GAGAT-
1 GGTGGAGGTGGAGACTTGTAGACATA
* * *
62838521 GGCGGATGTGGAGACTTGTAGATATA
1 GGTGGAGGTGGAGACTTGTAGACATA
* * *
62838547 GGGTGGAGGAGGAGA---G-GGAGAT-
1 -GGTGGAGGTGGAGACTTGTAGACATA
*
62838569 GGCGGAGGTGGAGACTTGTAGACATA
1 GGTGGAGGTGGAGACTTGTAGACATA
62838595 GGGTGGAGGT
1 -GGTGGAGGT
62838605 AGTGAAGGTG
Statistics
Matches: 106, Mismatches: 29, Indels: 36
0.62 0.17 0.21
Matches are distributed among these distances:
21 34 0.32
23 12 0.11
24 4 0.04
25 13 0.12
27 43 0.41
ACGTcount: A:0.26, C:0.05, G:0.49, T:0.20
Consensus pattern (26 bp):
GGTGGAGGTGGAGACTTGTAGACATA
Found at i:62838848 original size:24 final size:24
Alignment explanation
Indices: 62838821--62838897 Score: 68
Period size: 24 Copynumber: 3.2 Consensus size: 24
62838811 TGATGGTGGT
62838821 GGTGGGGACTTATAAACATATGGA
1 GGTGGGGACTTATAAACATATGGA
* ** * * *
62838845 GGTGGTGGA--GATGGAGATGGTGGT
1 GGTGG-GGACTTATAAACAT-ATGGA
62838869 GGTGGGGACTTATAAACATATGGA
1 GGTGGGGACTTATAAACATATGGA
62838893 GGTGG
1 GGTGG
62838898 TGGAGATGGA
Statistics
Matches: 37, Mismatches: 12, Indels: 8
0.65 0.21 0.14
Matches are distributed among these distances:
23 8 0.22
24 21 0.57
25 8 0.22
ACGTcount: A:0.26, C:0.05, G:0.44, T:0.25
Consensus pattern (24 bp):
GGTGGGGACTTATAAACATATGGA
Found at i:62838851 original size:27 final size:27
Alignment explanation
Indices: 62838813--62838900 Score: 80
Period size: 27 Copynumber: 3.5 Consensus size: 27
62838803 GGTGAAGGTG
*
62838813 ATGGTGGTGGTGGGGACTTATAAACAT
1 ATGGAGGTGGTGGGGACTTATAAACAT
* ** *
62838840 ATGGAGGTGGT--GGA--GAT--GGAG
1 ATGGAGGTGGTGGGGACTTATAAACAT
*
62838861 ATGGTGGTGGTGGGGACTTATAAACAT
1 ATGGAGGTGGTGGGGACTTATAAACAT
62838888 ATGGAGGTGGTGG
1 ATGGAGGTGGTGG
62838901 AGATGGAGAT
Statistics
Matches: 44, Mismatches: 11, Indels: 12
0.66 0.16 0.18
Matches are distributed among these distances:
21 11 0.25
23 5 0.11
25 5 0.11
27 23 0.52
ACGTcount: A:0.24, C:0.05, G:0.45, T:0.26
Consensus pattern (27 bp):
ATGGAGGTGGTGGGGACTTATAAACAT
Found at i:62838908 original size:15 final size:15
Alignment explanation
Indices: 62838888--62838917 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
62838878 TTATAAACAT
*
62838888 ATGGAGGTGGTGGAG
1 ATGGAGATGGTGGAG
62838903 ATGGAGATGGTGGAG
1 ATGGAGATGGTGGAG
62838918 GTGGGGACTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.57, T:0.20
Consensus pattern (15 bp):
ATGGAGATGGTGGAG
Found at i:62839005 original size:30 final size:30
Alignment explanation
Indices: 62838965--62839053 Score: 88
Period size: 30 Copynumber: 3.0 Consensus size: 30
62838955 AGAAGCTGGC
*
62838965 GGTGGAGACTTATAGGCATACGGTGGTGGA
1 GGTGGAGACTTATAGGCATAAGGTGGTGGA
* * * ** *
62838995 GGTGGGGACTTGTAGACATAAGAAGGTGGT
1 GGTGGAGACTTATAGGCATAAGGTGGTGGA
* * *
62839025 GGTGGAGAGTTATAGGTATATGGTGGTGG
1 GGTGGAGACTTATAGGCATAAGGTGGTGG
62839054 CGATGATGGT
Statistics
Matches: 44, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.24, C:0.06, G:0.45, T:0.26
Consensus pattern (30 bp):
GGTGGAGACTTATAGGCATAAGGTGGTGGA
Found at i:62841052 original size:24 final size:24
Alignment explanation
Indices: 62841025--62841076 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
62841015 TTAGTAAGTC
*
62841025 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
62841049 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
62841073 AAAT
1 AAAT
62841077 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:62844137 original size:23 final size:23
Alignment explanation
Indices: 62844095--62844138 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
62844085 ATACAAGGGT
*
62844095 AAAATTATAGTTTAACTCTCATA
1 AAAATTATAATTTAACTCTCATA
62844118 AAAATATATAATTTAA-TCTCA
1 AAAAT-TATAATTTAACTCTCA
62844139 ACCCCAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.48, C:0.11, G:0.02, T:0.39
Consensus pattern (23 bp):
AAAATTATAATTTAACTCTCATA
Found at i:62845387 original size:44 final size:43
Alignment explanation
Indices: 62845306--62845388 Score: 98
Period size: 44 Copynumber: 1.9 Consensus size: 43
62845296 CCTGAAAAAA
* * *
62845306 AATAAAAAATAACAGAATTAAAGGTTTGGATCTGAAAATGAAG
1 AATAAAAAAAAACAGAATTAAAGATTTGAATCTGAAAATGAAG
62845349 AATAAAATAAAAACAGAATT-AAGAATATTGAATC-GAAAAT
1 AATAAAA-AAAAACAGAATTAAAG-AT-TTGAATCTGAAAAT
62845389 TTGAGAAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
43 10 0.29
44 18 0.53
45 6 0.18
ACGTcount: A:0.58, C:0.05, G:0.14, T:0.23
Consensus pattern (43 bp):
AATAAAAAAAAACAGAATTAAAGATTTGAATCTGAAAATGAAG
Found at i:62850038 original size:17 final size:16
Alignment explanation
Indices: 62850016--62850062 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
62850006 AATTAATTAA
62850016 TTAAAATTTTATAAAAT
1 TTAAAATTTTA-AAAAT
*
62850033 TTAAAAATTTAAAAAT
1 TTAAAATTTTAAAAAT
*
62850049 TATAAAATTATAAA
1 T-TAAAATTTTAAA
62850063 TCAATTCACT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
16 6 0.23
17 20 0.77
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
TTAAAATTTTAAAAAT
Found at i:62850041 original size:8 final size:8
Alignment explanation
Indices: 62850016--62850055 Score: 53
Period size: 8 Copynumber: 4.8 Consensus size: 8
62850006 AATTAATTAA
*
62850016 TTAAAATT
1 TTAAAAAT
62850024 TTATAAAAT
1 TTA-AAAAT
62850033 TTAAAAAT
1 TTAAAAAT
62850041 TTAAAAAT
1 TTAAAAAT
62850049 TATAAAA
1 T-TAAAA
62850056 TTATAAATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
8 17 0.59
9 12 0.41
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
TTAAAAAT
Found at i:62850056 original size:16 final size:17
Alignment explanation
Indices: 62850024--62850062 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
62850014 AATTAAAATT
*
62850024 TTATAAAATTTA-AAAA
1 TTATAAAAATTATAAAA
62850040 TT-TAAAAATTATAAAA
1 TTATAAAAATTATAAAA
62850056 TTATAAA
1 TTATAAA
62850063 TCAATTCACT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 8 0.40
16 8 0.40
17 4 0.20
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TTATAAAAATTATAAAA
Found at i:62858831 original size:18 final size:18
Alignment explanation
Indices: 62858808--62858842 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
62858798 GGTCATTGAA
*
62858808 TTTGATAATTAAGTTTAT
1 TTTGATAATTAAATTTAT
*
62858826 TTTGATATTTAAATTTA
1 TTTGATAATTAAATTTA
62858843 AAAAATATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (18 bp):
TTTGATAATTAAATTTAT
Found at i:62862603 original size:203 final size:205
Alignment explanation
Indices: 62862208--62862814 Score: 593
Period size: 210 Copynumber: 2.9 Consensus size: 205
62862198 TTAAACACGT
* * * *
62862208 GTTTGATCATTGGGTTTTTTTAATTATTTTATTTAAATATGATATAAAAGTACGAAAAGATAAAA
1 GTTTGATCATT-GG-ATTTGTAATTATTTTATTTAAAAATGATATAAAAGTACGAAAAGACAAAA
* * * *
62862273 ATGAAATCATAATAATATTAATTATAATTTAAAAGGAGTATTTCTATAATTTCATAATTGAGTTG
64 GTGAAATCACAATAACATTAATTATAATTTAAAAGGAGTATTTCTATAATTTCATAATTAAGTTG
* * * ** * *
62862338 GTGATCCAGTTAAGGGTGACACTAGCTCCTTAAATTGCTTAAATATAAGTATTAGGTTAGATATT
129 GTGATCCAATTAAAGGTGACACTAACTCAGTAAAGTGCTTAAATATAAGTATTAGATTAGATATT
*
62862403 -A-A-ATA-TGC
194 AACACATATTCC
* *
62862411 GTTTGATCATTGGATTTGTAATTATATTATTTAAAAATGATATAAAAGTACGAAAAGAGAAAAGT
1 GTTTGATCATTGGATTTGTAATTATTTTATTTAAAAATGATATAAAAGTACGAAAAGACAAAAGT
* * *
62862476 GACATCACAATAACATTGATTATAATTTTACAAAAGGGGTATTTCTATAATTTCATAATTAAGTT
66 GAAATCACAATAACATTAATTATAA-TTT--AAAAGGAGTATTTCTATAATTTCATAATTAAGTT
* * *
62862541 GGTGA-CCAATTAAAGGTGACACTAACTCAGTAACGTGTTTAAATATAAGTATTATATTAGATAT
128 GGTGATCCAATTAAAGGTGACACTAACTCAGTAAAGTGCTTAAATATAAGTATTAGATTAGATAT
62862605 TGAACACATATTCC
193 T-AACACATATTCC
* * **
62862619 GTCATTGGAT--TTGTAATTTGTAATTATTTTATTTGAAAATGATATAAAAGTATAAAAAGACAA
1 GT--TT-GATCATTG-GATTTGTAATTATTTTATTTAAAAATGATATAAAAGTACGAAAAGACAA
** *** * * * *
62862682 AAGTGTTATTGTAATAATATTAATTATAATTTAAAAGAAATGATATTTTTATAATTTCATAATTG
62 AAGTGAAATCACAATAACATTAATTATAATTTAAAAG-GA-G-TATTTCTATAATTTCATAATTA
* * * * * * * ** *
62862747 AGTAGG-CAGTTCAATT-AAGAGCGATACTAACTCAGTAAAATACTTAAATACGAGTATTATATT
124 AGTTGGTGA-TCCAATTAAAG-GTGACACTAACTCAGTAAAGTGCTTAAATATAAGTATTAGATT
62862810 AGATA
187 AGATA
62862815 CATTAAATAT
Statistics
Matches: 335, Mismatches: 51, Indels: 28
0.81 0.12 0.07
Matches are distributed among these distances:
201 67 0.20
202 5 0.01
203 61 0.18
204 37 0.11
205 1 0.00
206 1 0.00
207 8 0.02
208 4 0.01
209 8 0.02
210 95 0.28
211 48 0.14
ACGTcount: A:0.41, C:0.07, G:0.14, T:0.38
Consensus pattern (205 bp):
GTTTGATCATTGGATTTGTAATTATTTTATTTAAAAATGATATAAAAGTACGAAAAGACAAAAGT
GAAATCACAATAACATTAATTATAATTTAAAAGGAGTATTTCTATAATTTCATAATTAAGTTGGT
GATCCAATTAAAGGTGACACTAACTCAGTAAAGTGCTTAAATATAAGTATTAGATTAGATATTAA
CACATATTCC
Found at i:62866771 original size:4 final size:4
Alignment explanation
Indices: 62866762--62866791 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
62866752 TTAAATACGC
62866762 AATA AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AA
62866792 AATAGGGGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:62872582 original size:16 final size:18
Alignment explanation
Indices: 62872543--62872576 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
62872533 TAAGTTTATA
62872543 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
62872560 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
62872577 AATTTAAAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:62873451 original size:20 final size:19
Alignment explanation
Indices: 62873405--62873453 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 19
62873395 AATAAAATTT
* *
62873405 ATTTTTTAAATTAATAAAA
1 ATTTTTAAAATAAATAAAA
62873424 ATGCTTTTAAAATAAATAAATA
1 AT--TTTTAAAATAAATAAA-A
62873446 ATTTTTAA
1 ATTTTTAA
62873454 TCACTTCATG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
19 2 0.08
20 6 0.24
21 14 0.56
22 3 0.12
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (19 bp):
ATTTTTAAAATAAATAAAA
Found at i:62875193 original size:17 final size:19
Alignment explanation
Indices: 62875166--62875210 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
62875156 TCTAGCCTCG
62875166 ATATAATATTAAT-TTTAA
1 ATATAATATTAATATTTAA
*
62875184 ATAT-ATATTAATATTTAT
1 ATATAATATTAATATTTAA
62875202 AT-TAATATT
1 ATATAATATT
62875211 TAATTTCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 9 0.38
18 15 0.62
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
ATATAATATTAATATTTAA
Found at i:62875204 original size:12 final size:12
Alignment explanation
Indices: 62875169--62875212 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
62875159 AGCCTCGATA
* *
62875169 TAATATTAATTT
1 TAATATTTATAT
*
62875181 TAA-ATATATAT
1 TAATATTTATAT
62875192 TAATATTTATAT
1 TAATATTTATAT
62875204 TAATATTTA
1 TAATATTTA
62875213 ATTTCAAATC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 8 0.30
12 19 0.70
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
TAATATTTATAT
Found at i:62875480 original size:89 final size:89
Alignment explanation
Indices: 62875335--62875546 Score: 225
Period size: 89 Copynumber: 2.4 Consensus size: 89
62875325 TTTTGTATTT
* ***
62875335 AATTGGGTATTTAAACTTTCAAAATGCATCAAAAAGGTACTCAAAATTTTTCAAAAAAAGCAATT
1 AATTGGGTACTTAAACTTTCAAAATGCATC-AAAAGGTACTCAAAA-TTAAAAAAAAAAGCAATT
62875400 AAGCCACT-ATTTTCTCTT-ACACTC
64 AAGCCACTGATTTTCTCTTCACACTC
* * * *
62875424 AATTGAGTACTTAAACTTTCAAAATGCATCAAAAGG-CCTTCAAACTTAAAAAAAAAATCAATTA
1 AATTGGGTACTTAAACTTTCAAAATGCATCAAAAGGTAC-TCAAAATTAAAAAAAAAAGCAATTA
* * * * *
62875488 AGCCCCTGCTTTTTTTTTCCCACTC
65 AGCCACTGATTTTCTCTTCACACTC
* *
62875513 AATTGGGTACTTAAA-TTGCCAAAATGCATTAAAA
1 AATTGGGTACTTAAACTT-TCAAAATGCATCAAAA
62875547 ATGTATTTTG
Statistics
Matches: 103, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
87 22 0.21
88 20 0.19
89 61 0.59
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (89 bp):
AATTGGGTACTTAAACTTTCAAAATGCATCAAAAGGTACTCAAAATTAAAAAAAAAAGCAATTAA
GCCACTGATTTTCTCTTCACACTC
Found at i:62876582 original size:21 final size:21
Alignment explanation
Indices: 62876556--62876598 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
62876546 GTTCGGACTC
*
62876556 TAAGAAAGTGTGGGAAAATCT
1 TAAGAAAGTGCGGGAAAATCT
62876577 TAAGAAAGTGCGGGAAAATCT
1 TAAGAAAGTGCGGGAAAATCT
62876598 T
1 T
62876599 GTAACTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.42, C:0.07, G:0.28, T:0.23
Consensus pattern (21 bp):
TAAGAAAGTGCGGGAAAATCT
Found at i:62904690 original size:22 final size:22
Alignment explanation
Indices: 62904664--62904708 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 22
62904654 ATACAGCATG
62904664 TATATTATTTTAATT-TGAATTA
1 TATATTATTTTAATTAT-AATTA
62904686 TATATTATTTTAATTATAATTA
1 TATATTATTTTAATTATAATTA
62904708 T
1 T
62904709 TAATTTAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
TATATTATTTTAATTATAATTA
Found at i:62904700 original size:16 final size:15
Alignment explanation
Indices: 62904676--62904709 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
62904666 TATTATTTTA
62904676 ATTTGAATTATATATT
1 ATTTGAATTATA-ATT
*
62904692 ATTTTAATTATAATT
1 ATTTGAATTATAATT
62904707 ATT
1 ATT
62904710 AATTTAGTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (15 bp):
ATTTGAATTATAATT
Found at i:62904715 original size:18 final size:16
Alignment explanation
Indices: 62904673--62904715 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 16
62904663 GTATATTATT
62904673 TTAATTTGAATTATATA
1 TTAATTT-AATTATATA
*
62904690 TTATTTTAATTATAATTA
1 TTAATTTAATTAT-A-TA
62904708 TTAATTTA
1 TTAATTTA
62904716 GTTGGCATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 6 0.27
17 7 0.32
18 9 0.41
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (16 bp):
TTAATTTAATTATATA
Found at i:62914394 original size:8 final size:8
Alignment explanation
Indices: 62914381--62914413 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
62914371 TTTGCTTCTC
62914381 TTTTTTGT
1 TTTTTTGT
62914389 TTTTTTGT
1 TTTTTTGT
62914397 TTTTTT-T
1 TTTTTTGT
62914404 TTTTGTTGT
1 TTTT-TTGT
62914413 T
1 T
62914414 AGTAGTGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
7 5 0.22
8 16 0.70
9 2 0.09
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (8 bp):
TTTTTTGT
Found at i:62914395 original size:21 final size:21
Alignment explanation
Indices: 62914371--62914410 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
62914361 CTATTATTGC
62914371 TTTGCTTCTCTTTTTTGTTTT
1 TTTGCTTCTCTTTTTTGTTTT
* * *
62914392 TTTGTTTTTTTTTTTTGTT
1 TTTGCTTCTCTTTTTTGTT
62914411 GTTAGTAGTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.00, C:0.07, G:0.10, T:0.82
Consensus pattern (21 bp):
TTTGCTTCTCTTTTTTGTTTT
Found at i:62914402 original size:16 final size:16
Alignment explanation
Indices: 62914381--62914413 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
62914371 TTTGCTTCTC
*
62914381 TTTTTTGTTTTT-TTG
1 TTTTTTTTTTTTGTTG
62914396 TTTTTTTTTTTTGTTG
1 TTTTTTTTTTTTGTTG
62914412 TT
1 TT
62914414 AGTAGTGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (16 bp):
TTTTTTTTTTTTGTTG
Found at i:62918246 original size:5 final size:5
Alignment explanation
Indices: 62918236--62918267 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
62918226 TAATCAAGTA
62918236 TATAT TATAT TATAT TATAT TATAT TATAT TA
1 TATAT TATAT TATAT TATAT TATAT TATAT TA
62918268 CAATGTGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:62936522 original size:42 final size:42
Alignment explanation
Indices: 62936473--62936556 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
62936463 GTTTCTAACT
62936473 CTATTTTAAAATAACAAAATGGCAGATCACATGCAAGTTCAA
1 CTATTTTAAAATAACAAAATGGCAGATCACATGCAAGTTCAA
62936515 CTATTTTAAAATAACAAAATGGCAGATCACATGCAAGTTCAA
1 CTATTTTAAAATAACAAAATGGCAGATCACATGCAAGTTCAA
62936557 GCCAATTATA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.45, C:0.17, G:0.12, T:0.26
Consensus pattern (42 bp):
CTATTTTAAAATAACAAAATGGCAGATCACATGCAAGTTCAA
Found at i:62941526 original size:2 final size:2
Alignment explanation
Indices: 62941519--62941545 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
62941509 AAAACTTTAA
62941519 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
62941546 AAGATTACAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:62942453 original size:29 final size:29
Alignment explanation
Indices: 62942411--62942484 Score: 130
Period size: 29 Copynumber: 2.6 Consensus size: 29
62942401 ATAGGTATCT
62942411 AATCAAATTAGTCCCTCTGTTATTAAATG
1 AATCAAATTAGTCCCTCTGTTATTAAATG
62942440 AATCAAATTAGTCCCTCTGTTATTAAATG
1 AATCAAATTAGTCCCTCTGTTATTAAATG
* *
62942469 AAACAATTTAGTCCCT
1 AATCAAATTAGTCCCT
62942485 ATACTATTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.36
Consensus pattern (29 bp):
AATCAAATTAGTCCCTCTGTTATTAAATG
Found at i:62942492 original size:29 final size:29
Alignment explanation
Indices: 62942414--62942495 Score: 92
Period size: 29 Copynumber: 2.8 Consensus size: 29
62942404 GGTATCTAAT
* ** *
62942414 CAAATTAGTCCCTCTGTTATTAAATGAAT
1 CAAATTAGTCCCTATACTATTAAATGAAA
* **
62942443 CAAATTAGTCCCTCTGTTATTAAATGAAA
1 CAAATTAGTCCCTATACTATTAAATGAAA
*
62942472 CAATTTAGTCCCTATACTATTAAA
1 CAAATTAGTCCCTATACTATTAAA
62942496 AAAGAATCAA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 48 1.00
ACGTcount: A:0.37, C:0.18, G:0.09, T:0.37
Consensus pattern (29 bp):
CAAATTAGTCCCTATACTATTAAATGAAA
Found at i:62944331 original size:31 final size:31
Alignment explanation
Indices: 62944296--62944369 Score: 78
Period size: 31 Copynumber: 2.4 Consensus size: 31
62944286 AAGTATTAAT
62944296 TTGAACCAAAAAGCCAAGTTTAGGTACCAAA
1 TTGAACCAAAAAGCCAAGTTTAGGTACCAAA
** * *
62944327 TTGAA-CATTGAGGCCAAGTTTAGGTACCTAA
1 TTGAACCA-AAAAGCCAAGTTTAGGTACCAAA
* *
62944358 TTGGACAAAAAA
1 TTGAACCAAAAA
62944370 ACCTTATGTA
Statistics
Matches: 32, Mismatches: 9, Indels: 4
0.71 0.20 0.09
Matches are distributed among these distances:
30 2 0.06
31 29 0.91
32 1 0.03
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.23
Consensus pattern (31 bp):
TTGAACCAAAAAGCCAAGTTTAGGTACCAAA
Found at i:62946507 original size:19 final size:19
Alignment explanation
Indices: 62946468--62946507 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
62946458 ACTCATTGGT
* *
62946468 TTTTATTTAATATTTAGTA
1 TTTTATATAATATGTAGTA
*
62946487 TTTTATATAATATGTATTA
1 TTTTATATAATATGTAGTA
62946506 TT
1 TT
62946508 CCTTTTATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (19 bp):
TTTTATATAATATGTAGTA
Found at i:62948174 original size:16 final size:17
Alignment explanation
Indices: 62948145--62948177 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
62948135 TAAATTCTAT
62948145 TTTTATTTAATATATAA
1 TTTTATTTAATATATAA
*
62948162 TTTT-TTTATTATATAA
1 TTTTATTTAATATATAA
62948178 ATATTAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTTATTTAATATATAA
Found at i:62950506 original size:138 final size:139
Alignment explanation
Indices: 62950355--62950622 Score: 423
Period size: 139 Copynumber: 1.9 Consensus size: 139
62950345 AATTTATCGA
* * *
62950355 AAACCCAA-TTTTTTTAAAAAATTAAACATATTATGTCGATTATTCATTCATATCTC-AATTCGA
1 AAACCCAATTTTTTTTAAAAAAATAAACATATTACGTCAATTATTCATTCATATC-CAAATTCGA
62950418 GTAATAAAAAAATTAAAAACAACCATGTAAAAATATGAGGAAGAGAAAACAAAGTGAAAAGATAA
65 GTAATAAAAAAATTAAAAACAACCATGTAAAAATATGAGGAAGAGAAAACAAAGTGAAAAGATAA
62950483 AATTAATCCG
130 AATTAATCCG
62950493 AAACCCAATTTTTTTTAAAAAAATAAACATATTACGTCAATTATTCATTCATATCCAAATTCGAG
1 AAACCCAATTTTTTTTAAAAAAATAAACATATTACGTCAATTATTCATTCATATCCAAATTCGAG
* ** * * * *
62950558 TAATAAAAAGATTAAAAAGGAGCATGTAAGAATATGAGGATGAGAAAGCAAAGTGAAAAGATAAA
66 TAATAAAAAAATTAAAAACAACCATGTAAAAATATGAGGAAGAGAAAACAAAGTGAAAAGATAAA
62950623 GTGATAAAAG
Statistics
Matches: 118, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
138 9 0.08
139 109 0.92
ACGTcount: A:0.50, C:0.11, G:0.12, T:0.27
Consensus pattern (139 bp):
AAACCCAATTTTTTTTAAAAAAATAAACATATTACGTCAATTATTCATTCATATCCAAATTCGAG
TAATAAAAAAATTAAAAACAACCATGTAAAAATATGAGGAAGAGAAAACAAAGTGAAAAGATAAA
ATTAATCCG
Found at i:62956723 original size:14 final size:14
Alignment explanation
Indices: 62956706--62956732 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
62956696 AACCATCTGG
62956706 AAAACACCAGATTA
1 AAAACACCAGATTA
62956720 AAAACACCAGATT
1 AAAACACCAGATT
62956733 GTGTAACTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.22, G:0.07, T:0.15
Consensus pattern (14 bp):
AAAACACCAGATTA
Found at i:62964531 original size:97 final size:97
Alignment explanation
Indices: 62964373--62964567 Score: 390
Period size: 97 Copynumber: 2.0 Consensus size: 97
62964363 GAACATAGTT
62964373 AAATGCAAATTCAAAGTCATTATTGACGTTGCAAGGAGCCAAAAACCAGACAAAAACTTCAAAAC
1 AAATGCAAATTCAAAGTCATTATTGACGTTGCAAGGAGCCAAAAACCAGACAAAAACTTCAAAAC
62964438 TCAACACAAAAGACTGGAAACTTGACATAGCA
66 TCAACACAAAAGACTGGAAACTTGACATAGCA
62964470 AAATGCAAATTCAAAGTCATTATTGACGTTGCAAGGAGCCAAAAACCAGACAAAAACTTCAAAAC
1 AAATGCAAATTCAAAGTCATTATTGACGTTGCAAGGAGCCAAAAACCAGACAAAAACTTCAAAAC
62964535 TCAACACAAAAGACTGGAAACTTGACATAGCA
66 TCAACACAAAAGACTGGAAACTTGACATAGCA
62964567 A
1 A
62964568 TAACTTCATT
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
97 98 1.00
ACGTcount: A:0.48, C:0.21, G:0.14, T:0.17
Consensus pattern (97 bp):
AAATGCAAATTCAAAGTCATTATTGACGTTGCAAGGAGCCAAAAACCAGACAAAAACTTCAAAAC
TCAACACAAAAGACTGGAAACTTGACATAGCA
Found at i:62966415 original size:20 final size:20
Alignment explanation
Indices: 62966390--62966432 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
62966380 TTAGTTGATG
62966390 TGTGGCATTGATGGACCTTA
1 TGTGGCATTGATGGACCTTA
62966410 TGTGGCATTGATGGACCTTA
1 TGTGGCATTGATGGACCTTA
62966430 TGT
1 TGT
62966433 AATTTTCTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.19, C:0.14, G:0.30, T:0.37
Consensus pattern (20 bp):
TGTGGCATTGATGGACCTTA
Found at i:62970892 original size:31 final size:30
Alignment explanation
Indices: 62970822--62970894 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
62970812 TAGACTTAAA
* * *
62970822 AAAATAGCTTAGTGACTTAAATAAAATTTT
1 AAAATAGTTTAGAGACTTAAATAAAACTTT
62970852 AAAATAGTTTAGAGACTTAAATAAAAACTTT
1 AAAATAGTTTAGAGACTTAAAT-AAAACTTT
**
62970883 CGAATAGTTTAG
1 AAAATAGTTTAG
62970895 TGACCAAAAC
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
30 20 0.54
31 17 0.46
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.34
Consensus pattern (30 bp):
AAAATAGTTTAGAGACTTAAATAAAACTTT
Found at i:62971346 original size:31 final size:31
Alignment explanation
Indices: 62971306--62971365 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
62971296 TTATAGTCAC
*
62971306 CCAATTATTAATAAATTTATT-TTTTGATCAT
1 CCAACTATTAAT-AATTTATTGTTTTGATCAT
*
62971337 CCAACTATTAATAATTTTTTGTTTTGATC
1 CCAACTATTAATAATTTATTGTTTTGATC
62971366 CATAATATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 7 0.27
31 19 0.73
ACGTcount: A:0.32, C:0.12, G:0.05, T:0.52
Consensus pattern (31 bp):
CCAACTATTAATAATTTATTGTTTTGATCAT
Found at i:62981785 original size:18 final size:17
Alignment explanation
Indices: 62981745--62981788 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
62981735 GGCCTATTTA
* *
62981745 AAATTACATATATATAT
1 AAATTAAATATATATAG
62981762 ATAATTAAATACTATATAG
1 A-AATTAAATA-TATATAG
62981781 AAATTAAA
1 AAATTAAA
62981789 AATGCTATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 1 0.04
18 15 0.65
19 7 0.30
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (17 bp):
AAATTAAATATATATAG
Found at i:62993051 original size:126 final size:129
Alignment explanation
Indices: 62992822--62993084 Score: 496
Period size: 126 Copynumber: 2.1 Consensus size: 129
62992812 AGAAAGGCCA
62992822 AAATAAAATTTTACCTTTATTAATTAAAAATTTTAAAGAGCCTAGAATTTTTTTTTTTCATTTTA
1 AAATAAAATTTTACCTTTATTAATTAAAAATTTTAAAGAGCCTAGAA-TTTTTTTTTTCATTTTA
62992887 AAGGGGATCGAGCCCCTGCTAACCTCCCTAGCTACGCCCTGTAGCCCACATTAAGCCAAGTAAGC
65 AAGGGGATCGAGCCCCTGCTAACCTCCCTAGCTACGCCCTGTAGCCCACATTAAGCCAAGTAAGC
62992952 AAATAAAATTTTACCTTTATTAATT-AAAATTTTAAAGAGCCTAGAA-TTTTTTTTTCATTTTAA
1 AAATAAAATTTTACCTTTATTAATTAAAAATTTTAAAGAGCCTAGAATTTTTTTTTTCATTTTAA
62993015 A-GGGATCGAGCCCCTGCTAACCTCCCTAGCTACGCCCTGTAGCCCACATTAAGCCAAGTAAGC
66 AGGGGATCGAGCCCCTGCTAACCTCCCTAGCTACGCCCTGTAGCCCACATTAAGCCAAGTAAGC
62993078 AAATAAA
1 AAATAAA
62993085 GTGTTGAGGA
Statistics
Matches: 133, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
126 69 0.52
127 18 0.14
129 21 0.16
130 25 0.19
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (129 bp):
AAATAAAATTTTACCTTTATTAATTAAAAATTTTAAAGAGCCTAGAATTTTTTTTTTCATTTTAA
AGGGGATCGAGCCCCTGCTAACCTCCCTAGCTACGCCCTGTAGCCCACATTAAGCCAAGTAAGC
Found at i:62993459 original size:20 final size:19
Alignment explanation
Indices: 62993430--62993471 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
62993420 TTACAATGTA
62993430 ATATAAAAATTAATACAAAT
1 ATATAAAAATT-ATACAAAT
* *
62993450 ATATATAAATTATATAAAT
1 ATATAAAAATTATACAAAT
62993469 ATA
1 ATA
62993472 CAATATTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (19 bp):
ATATAAAAATTATACAAAT
Found at i:62998580 original size:27 final size:28
Alignment explanation
Indices: 62998522--62998580 Score: 77
Period size: 27 Copynumber: 2.1 Consensus size: 28
62998512 TCAATTAATC
* *
62998522 AAATATAAAATTGATAATTTATTCAATT
1 AAATATAAAATTGATAACTTATTCAATA
62998550 AAATA-AAAATTGATAACTTATT-ACATA
1 AAATATAAAATTGATAACTTATTCA-ATA
62998577 AAAT
1 AAAT
62998581 CGAATAAACT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 1 0.04
27 22 0.79
28 5 0.18
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.37
Consensus pattern (28 bp):
AAATATAAAATTGATAACTTATTCAATA
Found at i:62998668 original size:65 final size:64
Alignment explanation
Indices: 62998535--62998688 Score: 238
Period size: 65 Copynumber: 2.4 Consensus size: 64
62998525 TATAAAATTG
* *
62998535 ATAATTTATTCAATTAAATAAAAATTGATAACTTATTACATAAAATCGAATAAACTAATCAAAC
1 ATAATTTATTCAATTAAATAAAAATCGATAACTTATTACATAAAATCGAATAAAATAATCAAAC
* *
62998599 ATAATTTATT-AATTAAATCGAAAATCGATAACTTATTCACATAAAATCGTATAAAATAATCAAA
1 ATAATTTATTCAATTAAAT-AAAAATCGATAACTTATT-ACATAAAATCGAATAAAATAATCAAA
*
62998663 T
64 C
62998664 ATAATTTATTCAATTAAATAAAAAT
1 ATAATTTATTCAATTAAATAAAAAT
62998689 TCAATAATTT
Statistics
Matches: 81, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
63 8 0.10
64 26 0.32
65 39 0.48
66 8 0.10
ACGTcount: A:0.53, C:0.10, G:0.03, T:0.34
Consensus pattern (64 bp):
ATAATTTATTCAATTAAATAAAAATCGATAACTTATTACATAAAATCGAATAAAATAATCAAAC
Found at i:63006136 original size:24 final size:23
Alignment explanation
Indices: 63006100--63006144 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
63006090 TATTATATAA
63006100 TTTATAACATATAAAACTAAATC
1 TTTATAACATATAAAACTAAATC
* *
63006123 TTTAGTAATATATAATACTAAA
1 TTTA-TAACATATAAAACTAAA
63006145 ATATAAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.51, C:0.09, G:0.02, T:0.38
Consensus pattern (23 bp):
TTTATAACATATAAAACTAAATC
Found at i:63006323 original size:28 final size:29
Alignment explanation
Indices: 63006258--63006329 Score: 94
Period size: 28 Copynumber: 2.5 Consensus size: 29
63006248 TTACGTTTTG
* *
63006258 GTCA-TAAACTATTCGAAAGTTTTATTTAA
1 GTCACTAAACTATT-TAAAATTTTATTTAA
*
63006287 GTCTCTAAACTATTTAAAATTTTATTT-A
1 GTCACTAAACTATTTAAAATTTTATTTAA
63006315 GTCACTAAACTATTT
1 GTCACTAAACTATTT
63006330 TTTTAAGTCT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
28 15 0.39
29 14 0.37
30 9 0.24
ACGTcount: A:0.36, C:0.12, G:0.07, T:0.44
Consensus pattern (29 bp):
GTCACTAAACTATTTAAAATTTTATTTAA
Found at i:63008797 original size:52 final size:48
Alignment explanation
Indices: 63008778--63008979 Score: 256
Period size: 46 Copynumber: 4.3 Consensus size: 48
63008768 TGACAAGTGG
* *
63008778 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
63008824 AAAGTGATAAGTGATAGCTTCGGCTACACTTATC-GATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
63008875 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
63008921 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
63008967 AAAGTGATAAGTG
1 AAAGTGATAAGTG
63008980 GCTACACTTA
Statistics
Matches: 142, Mismatches: 7, Indels: 14
0.87 0.04 0.09
Matches are distributed among these distances:
45 11 0.08
46 88 0.62
51 33 0.23
52 10 0.07
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:63008904 original size:97 final size:98
Alignment explanation
Indices: 63008712--63008979 Score: 448
Period size: 97 Copynumber: 2.7 Consensus size: 98
63008702 TTTGAGTACT
*
63008712 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
63008777 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
63008810 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATC-GATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
63008874 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
63008907 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
63008972 GATAAGTG
65 GAAAAGTG
63008980 GCTACACTTA
Statistics
Matches: 158, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
97 92 0.58
98 55 0.35
99 11 0.07
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:63008987 original size:37 final size:37
Alignment explanation
Indices: 63008943--63009088 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
63008933 GATAGCTTTA
*
63008943 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
63008980 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
63009017 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
63009054 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
63009089 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:63009010 original size:143 final size:143
Alignment explanation
Indices: 63008718--63008984 Score: 324
Period size: 143 Copynumber: 1.8 Consensus size: 143
63008708 TACTTCTGAT
* * *
63008718 CAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGT
1 CAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGAC-----GAAAGT
* * * * *
63008783 GATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGC
61 GATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG--AGCTACGAC
* *
63008848 TACACTTATCGATCAAGTGA
124 TACACTGATCGAACAAGTGA
* *
63008868 CAAGTGA-AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC-AAAGTGATAA
1 CAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACGAAAGTGATAA
* *
63008931 GTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG-GCTAC
66 GTAATAGCTTCAGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGAGCTAC
63008985 ACTTATCTGA
Statistics
Matches: 106, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
140 4 0.04
143 54 0.51
149 41 0.39
150 7 0.07
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.27
Consensus pattern (143 bp):
CAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACGAAAGTGATAA
GTAATAGCTTCAGCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGAGCTACGACTACACTG
ATCGAACAAGTGA
Found at i:63011763 original size:32 final size:32
Alignment explanation
Indices: 63011727--63011929 Score: 207
Period size: 32 Copynumber: 6.3 Consensus size: 32
63011717 AGTGGTACAT
63011727 ACAAAGTATACATTTCCTTTCATATGGTATAC
1 ACAAAGTATACATTTCCTTTCATATGGTATAC
**
63011759 ACAAAGTATACCCTTCCTTTTCATATGGTA-AC
1 ACAAAGTATACATTTCC-TTTCATATGGTATAC
* *
63011791 ACAAAGTATACATTTCTTTTCATATGGTA-CC
1 ACAAAGTATACATTTCCTTTCATATGGTATAC
* * *
63011822 ACAAAGTATACCTTTCATTTTCA-A-GTGTACAC
1 ACAAAGTATACATTTC-CTTTCATATG-GTATAC
* ** *
63011854 ACAAAGTGTACATAACCTTTTCATGTGGTATAC
1 ACAAAGTATACATTTCC-TTTCATATGGTATAC
* ** *
63011887 ACAAAGTGTACATAACCTTTCATGTGGTATAC
1 ACAAAGTATACATTTCCTTTCATATGGTATAC
63011919 ACAAAGTATAC
1 ACAAAGTATAC
63011930 CTAACCTTTT
Statistics
Matches: 148, Mismatches: 16, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
30 1 0.01
31 32 0.22
32 80 0.54
33 34 0.23
34 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.34
Consensus pattern (32 bp):
ACAAAGTATACATTTCCTTTCATATGGTATAC
Found at i:63011829 original size:95 final size:97
Alignment explanation
Indices: 63011727--63011929 Score: 227
Period size: 95 Copynumber: 2.1 Consensus size: 97
63011717 AGTGGTACAT
* * *
63011727 ACAAAGTATACATTTC-CTTTCATA-TGGTATACACAAAGTATACCCT-TCCTTTTCATATGGTA
1 ACAAAGTATACATTTCACTTTCA-AGT-GTACACACAAAGTATA-CATAACCTTTTCATATGGTA
** * *
63011789 -ACACAAAGTATACATTTCTTTTCATATGGTA-CC
63 TACACAAAGTATACATAACCTTTCATATGGTATAC
* * * *
63011822 ACAAAGTATACCTTTCATTTTCAAGTGTACACACAAAGTGTACATAACCTTTTCATGTGGTATAC
1 ACAAAGTATACATTTCACTTTCAAGTGTACACACAAAGTATACATAACCTTTTCATATGGTATAC
* *
63011887 ACAAAGTGTACATAACCTTTCATGTGGTATAC
66 ACAAAGTATACATAACCTTTCATATGGTATAC
63011919 ACAAAGTATAC
1 ACAAAGTATAC
63011930 CTAACCTTTT
Statistics
Matches: 90, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
94 2 0.02
95 44 0.49
96 32 0.36
97 12 0.13
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.34
Consensus pattern (97 bp):
ACAAAGTATACATTTCACTTTCAAGTGTACACACAAAGTATACATAACCTTTTCATATGGTATAC
ACAAAGTATACATAACCTTTCATATGGTATAC
Found at i:63012030 original size:29 final size:29
Alignment explanation
Indices: 63011934--63012019 Score: 136
Period size: 30 Copynumber: 2.9 Consensus size: 29
63011924 GTATACCTAA
*
63011934 CCTTTTCACATTCGATAGCCAAAGCTATC
1 CCTTTTCACATTCGATAGCCGAAGCTATC
*
63011963 CCTTTTTACATTCGATAGCCCGAAGCTATC
1 CCTTTTCACATTCGATAG-CCGAAGCTATC
*
63011993 CCTTTTCACATTCGATAGTCGAAGCTA
1 CCTTTTCACATTCGATAGCCGAAGCTA
63012020 CCACTATTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
29 25 0.48
30 27 0.52
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.33
Consensus pattern (29 bp):
CCTTTTCACATTCGATAGCCGAAGCTATC
Found at i:63012062 original size:30 final size:30
Alignment explanation
Indices: 63012012--63012150 Score: 217
Period size: 30 Copynumber: 4.6 Consensus size: 30
63012002 ATTCGATAGT
63012012 CGAAGCTACCACTATTCACTGATCAGGTAGC
1 CGAAGCTACCACT-TTCACTGATCAGGTAGC
* *
63012043 TGAAGCTACCACTTTCACTGATTAGGTAGC
1 CGAAGCTACCACTTTCACTGATCAGGTAGC
* *
63012073 CGAAGCTACTACTTTTCACTGATCAAGTA-C
1 CGAAGCTACCAC-TTTCACTGATCAGGTAGC
63012103 CGAAGCTACCACTTTCACTGATCAGGTAGC
1 CGAAGCTACCACTTTCACTGATCAGGTAGC
63012133 CGAAGCTACCACTTTCAC
1 CGAAGCTACCACTTTCAC
63012151 ATGTACACAC
Statistics
Matches: 98, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
29 15 0.15
30 57 0.58
31 26 0.27
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (30 bp):
CGAAGCTACCACTTTCACTGATCAGGTAGC
Found at i:63030742 original size:21 final size:21
Alignment explanation
Indices: 63030717--63030756 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
63030707 TCAAATGGTT
*
63030717 AATATATCATTTGGTACTTTC
1 AATATATAATTTGGTACTTTC
* *
63030738 AATATTTAATTTTGTACTT
1 AATATATAATTTGGTACTT
63030757 AAATATTTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.10, G:0.07, T:0.53
Consensus pattern (21 bp):
AATATATAATTTGGTACTTTC
Found at i:63030873 original size:1 final size:1
Alignment explanation
Indices: 63030867--63030900 Score: 68
Period size: 1 Copynumber: 34.0 Consensus size: 1
63030857 GCATAGCAAT
63030867 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
63030901 TTCTTGATTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 33 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:63031109 original size:30 final size:29
Alignment explanation
Indices: 63031030--63031116 Score: 113
Period size: 28 Copynumber: 3.0 Consensus size: 29
63031020 CTTTATTTTT
* * *
63031030 TGGGTTTTGTATTAATTTCTATATGTCTA
1 TGGGTTTTGTATTAATTTCGATATGTTTG
* *
63031059 T-GGTTTTGTTTTACTTTCGATATGTTTG
1 TGGGTTTTGTATTAATTTCGATATGTTTG
63031087 TGGGTTTTGTATTAATTTTCGATATGTTTG
1 TGGGTTTTGTATTAA-TTTCGATATGTTTG
63031117 GTGTTTTTCT
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
28 23 0.47
29 12 0.24
30 14 0.29
ACGTcount: A:0.16, C:0.06, G:0.21, T:0.57
Consensus pattern (29 bp):
TGGGTTTTGTATTAATTTCGATATGTTTG
Found at i:63034958 original size:20 final size:20
Alignment explanation
Indices: 63034933--63034972 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
63034923 GAAAATAAAG
63034933 CCGCATTGAAATACTCGACT
1 CCGCATTGAAATACTCGACT
63034953 CCGCATTGAAATACTCGACT
1 CCGCATTGAAATACTCGACT
63034973 TCAAACTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.25
Consensus pattern (20 bp):
CCGCATTGAAATACTCGACT
Found at i:63041676 original size:34 final size:34
Alignment explanation
Indices: 63041633--63041698 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
63041623 TAAGGCAGAA
63041633 TTGTAGTAAAATTCAAGCTACCATTGTTCTTTAC
1 TTGTAGTAAAATTCAAGCTACCATTGTTCTTTAC
*
63041667 TTGTAGTAAAATTCAAGTTACCATTGTTCTTT
1 TTGTAGTAAAATTCAAGCTACCATTGTTCTTT
63041699 TTCTTACGGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (34 bp):
TTGTAGTAAAATTCAAGCTACCATTGTTCTTTAC
Found at i:63042311 original size:106 final size:106
Alignment explanation
Indices: 63042126--63042337 Score: 415
Period size: 106 Copynumber: 2.0 Consensus size: 106
63042116 TCCCTCATTC
*
63042126 CATGTTAGGAAATTACTTTTAAGAGATATCAATGTAAGAATGATTTGAAATAAGACAATGTGATG
1 CATGTTAGGAAATTACTTTTAAGAGATATCAATGTAAGAATGATTTGAAATAAGACAATGTGATA
63042191 TATTCTCTTATTTATAAAAATAAAAATAAAGACTTAAATAA
66 TATTCTCTTATTTATAAAAATAAAAATAAAGACTTAAATAA
63042232 CATGTTAGGAAATTACTTTTAAGAGATATCAATGTAAGAATGATTTGAAATAAGACAATGTGATA
1 CATGTTAGGAAATTACTTTTAAGAGATATCAATGTAAGAATGATTTGAAATAAGACAATGTGATA
63042297 TATTCTCTTATTTATAAAAATAAAAATAAAGACTTAAATAA
66 TATTCTCTTATTTATAAAAATAAAAATAAAGACTTAAATAA
63042338 TTTCTGAAGC
Statistics
Matches: 105, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
106 105 1.00
ACGTcount: A:0.47, C:0.07, G:0.13, T:0.34
Consensus pattern (106 bp):
CATGTTAGGAAATTACTTTTAAGAGATATCAATGTAAGAATGATTTGAAATAAGACAATGTGATA
TATTCTCTTATTTATAAAAATAAAAATAAAGACTTAAATAA
Found at i:63046440 original size:22 final size:22
Alignment explanation
Indices: 63046385--63046441 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 22
63046375 ACTTTTATAA
*
63046385 ATAATAAAAATTATAAATATTT
1 ATAATAAAATTTATAAATATTT
* * * * *
63046407 ATATTTATATTTATATATTTTT
1 ATAATAAAATTTATAAATATTT
63046429 ATAATAAAATTTA
1 ATAATAAAATTTA
63046442 AATTAATTTT
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
ATAATAAAATTTATAAATATTT
Done.