Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 215 of 221
Found at i:63046868 original size:22 final size:23
Alignment explanation
Indices: 63046829--63046872 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
63046819 TTAAATAAAT
*
63046829 AAATAATATATTATTAAATATTA
1 AAATAATATAATATTAAATATTA
*
63046852 AAATAATTTAATA-TAAATATT
1 AAATAATATAATATTAAATATT
63046873 TTAAAAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (23 bp):
AAATAATATAATATTAAATATTA
Found at i:63052712 original size:18 final size:18
Alignment explanation
Indices: 63052691--63052725 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
63052681 TTTTTATAAA
*
63052691 AAAATTATTAATTATTTC
1 AAAATTATTAATAATTTC
*
63052709 AAAATTTTTAATAATTT
1 AAAATTATTAATAATTT
63052726 TAATTAAACA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (18 bp):
AAAATTATTAATAATTTC
Found at i:63065831 original size:60 final size:60
Alignment explanation
Indices: 63065738--63065856 Score: 238
Period size: 60 Copynumber: 2.0 Consensus size: 60
63065728 ACAGCCATCT
63065738 ATGGACATCTCTTAGACCATGTCAAATGCTGCCATGTGTCCAACCGAGTAAAATAAATAG
1 ATGGACATCTCTTAGACCATGTCAAATGCTGCCATGTGTCCAACCGAGTAAAATAAATAG
63065798 ATGGACATCTCTTAGACCATGTCAAATGCTGCCATGTGTCCAACCGAGTAAAATAAATA
1 ATGGACATCTCTTAGACCATGTCAAATGCTGCCATGTGTCCAACCGAGTAAAATAAATA
63065857 AAAATGGAAA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (60 bp):
ATGGACATCTCTTAGACCATGTCAAATGCTGCCATGTGTCCAACCGAGTAAAATAAATAG
Found at i:63066199 original size:10 final size:10
Alignment explanation
Indices: 63066184--63066219 Score: 72
Period size: 10 Copynumber: 3.6 Consensus size: 10
63066174 AGCCAGTACC
63066184 TGTATTGATA
1 TGTATTGATA
63066194 TGTATTGATA
1 TGTATTGATA
63066204 TGTATTGATA
1 TGTATTGATA
63066214 TGTATT
1 TGTATT
63066220 AACCCATACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.28, C:0.00, G:0.19, T:0.53
Consensus pattern (10 bp):
TGTATTGATA
Found at i:63087804 original size:19 final size:19
Alignment explanation
Indices: 63087782--63087819 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
63087772 TGAAAATAAA
63087782 AATAAATATATAAAAATTC
1 AATAAATATATAAAAATTC
* *
63087801 AATATATATATGAAAATTC
1 AATAAATATATAAAAATTC
63087820 TAGAAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (19 bp):
AATAAATATATAAAAATTC
Found at i:63087961 original size:12 final size:12
Alignment explanation
Indices: 63087946--63087981 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
63087936 TAAAAACTTA
63087946 TAAAAAATATTT
1 TAAAAAATATTT
63087958 TAAAAAAT-TTT
1 TAAAAAATATTT
*
63087969 TAAAATATATTT
1 TAAAAAATATTT
63087981 T
1 T
63087982 TTTATAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.45
12 12 0.55
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
TAAAAAATATTT
Found at i:63087963 original size:23 final size:24
Alignment explanation
Indices: 63087926--63088006 Score: 78
Period size: 23 Copynumber: 3.4 Consensus size: 24
63087916 TTAAAAATGT
63087926 AAAA-ATTTTATAAAAACTTATAA
1 AAAATATTTTATAAAAACTTATAA
* *
63087949 AAAATATTTTA-AAAAATTTTTAA
1 AAAATATTTTATAAAAACTTATAA
* *
63087972 AATATATTTTTTTATAAAA-TTATAA
1 AAAATA-TTTTATA-AAAACTTATAA
63087997 AAAAGTATTT
1 AAAA-TATTT
63088007 AAATTTCAAG
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
23 19 0.40
24 10 0.21
25 12 0.26
26 6 0.13
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (24 bp):
AAAATATTTTATAAAAACTTATAA
Found at i:63088200 original size:6 final size:7
Alignment explanation
Indices: 63088181--63088205 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
63088171 TGATATATGA
63088181 TATTTTT
1 TATTTTT
63088188 TATTTTT
1 TATTTTT
63088195 TATTTTT
1 TATTTTT
63088202 TATT
1 TATT
63088206 GGCAAAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
TATTTTT
Found at i:63090591 original size:2 final size:2
Alignment explanation
Indices: 63090584--63090614 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
63090574 TTCTACTTCT
63090584 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
63090615 TTTAATTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:63090750 original size:12 final size:13
Alignment explanation
Indices: 63090733--63090764 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
63090723 TTTTTATTTT
63090733 ATTTTTTTTTCGG
1 ATTTTTTTTTCGG
63090746 ATTTTTTTTTCGG
1 ATTTTTTTTTCGG
63090759 ATTTTT
1 ATTTTT
63090765 CCTGGTGATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.09, C:0.06, G:0.12, T:0.72
Consensus pattern (13 bp):
ATTTTTTTTTCGG
Found at i:63097793 original size:26 final size:26
Alignment explanation
Indices: 63097757--63097809 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
63097747 AAGAAATTCC
63097757 TTCTCAACTCTATCCGTACCAACCCA
1 TTCTCAACTCTATCCGTACCAACCCA
63097783 TTCTCAACTCTATCCGTACCAACCCA
1 TTCTCAACTCTATCCGTACCAACCCA
63097809 T
1 T
63097810 GCAAATTCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.42, G:0.04, T:0.28
Consensus pattern (26 bp):
TTCTCAACTCTATCCGTACCAACCCA
Found at i:63101505 original size:3 final size:3
Alignment explanation
Indices: 63101497--63101524 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
63101487 TAGTTACCAC
63101497 TCA TCA TCA TCA TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA T
63101525 GCAAACAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.36
Consensus pattern (3 bp):
TCA
Found at i:63108163 original size:111 final size:110
Alignment explanation
Indices: 63107924--63108168 Score: 307
Period size: 110 Copynumber: 2.2 Consensus size: 110
63107914 CCATCAAAGT
* * * * *
63107924 CATGCAAACAGAATATAACCGAGTCATTCCGTCCGTCGATCTAGCCATTAATCTAACCCTAAACT
1 CATGGAAACAGAACATAACCAAGTCATTCCGTCCGTCAACCTAGCCATTAATCTAACCCTAAACT
* * *
63107989 TTGAAATTTCTGGCGAAATTAAATAAGGCTCAAAAGTGTTAGAAG
66 TTCAAATTTCTGGCGAAATTAAAGAAGGCTCAAAAGTGTAAGAAG
* ** *
63108034 CATGGAAACAGAACATAACCAAGTCCTTCCGTTCCGTCAACCTAGCGGTTAATTTAACCCTAAAC
1 CATGGAAACAGAACATAACCAAGTCATTCCG-TCCGTCAACCTAGCCATTAATCTAACCCTAAAC
* *
63108099 -TTCAAATTT-TCGAGTGAAA-TCAAGAAGGCTCAAAAGTGTAAGAAG
65 TTTCAAATTTCT-G-GCGAAATTAAAGAAGGCTCAAAAGTGTAAGAAG
63108144 CATGGAAACAAGAACATAACCAAGT
1 CATGGAAAC-AGAACATAACCAAGT
63108169 AAAACCAGAT
Statistics
Matches: 117, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
109 1 0.01
110 68 0.58
111 48 0.41
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.24
Consensus pattern (110 bp):
CATGGAAACAGAACATAACCAAGTCATTCCGTCCGTCAACCTAGCCATTAATCTAACCCTAAACT
TTCAAATTTCTGGCGAAATTAAAGAAGGCTCAAAAGTGTAAGAAG
Found at i:63109988 original size:3 final size:3
Alignment explanation
Indices: 63109980--63110014 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
63109970 GAAAATGTTG
63109980 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
63110015 ATTCTTTTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:63111420 original size:18 final size:19
Alignment explanation
Indices: 63111397--63111435 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
63111387 TCATATGTAC
63111397 TTTAT-GTTATTTT-TAATT
1 TTTATGGTT-TTTTATAATT
63111415 TTTATGGTTTTTTATAATT
1 TTTATGGTTTTTTATAATT
63111434 TT
1 TT
63111436 AAAATTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTATGGTTTTTTATAATT
Found at i:63112582 original size:31 final size:31
Alignment explanation
Indices: 63112541--63112623 Score: 114
Period size: 31 Copynumber: 2.7 Consensus size: 31
63112531 ATAACCAAAC
*
63112541 TTTTCAAAGTGATCAAATAAGAGCCAAACAT
1 TTTTGAAAGTGATCAAATAAGAGCCAAACAT
* * *
63112572 TTTTGAAAGTGCTCAAATAAGAGTCAAACCT
1 TTTTGAAAGTGATCAAATAAGAGCCAAACAT
63112603 TTTTGAAAGT-ACTCAAATAAG
1 TTTTGAAAGTGA-TCAAATAAG
63112624 GGCTTCTCAA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.29
Consensus pattern (31 bp):
TTTTGAAAGTGATCAAATAAGAGCCAAACAT
Found at i:63117632 original size:22 final size:22
Alignment explanation
Indices: 63117606--63117651 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
63117596 GCAAAGTCTT
63117606 TTGATGCTCCTATAAAGGTCAG
1 TTGATGCTCCTATAAAGGTCAG
63117628 TTGATGCTCCTATAAAGGTCAG
1 TTGATGCTCCTATAAAGGTCAG
63117650 TT
1 TT
63117652 CTTTCTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35
Consensus pattern (22 bp):
TTGATGCTCCTATAAAGGTCAG
Found at i:63122846 original size:14 final size:12
Alignment explanation
Indices: 63122827--63122859 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
63122817 TTCATGAATT
*
63122827 TCTCTCTCTGTA
1 TCTCTCTCTCTA
63122839 TCTCTCTCTCTA
1 TCTCTCTCTCTA
63122851 TCTCTCTCT
1 TCTCTCTCT
63122860 TTGTGTAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.06, C:0.39, G:0.03, T:0.52
Consensus pattern (12 bp):
TCTCTCTCTCTA
Found at i:63126631 original size:28 final size:28
Alignment explanation
Indices: 63126599--63126654 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
63126589 GTCCTTGCTA
63126599 AACGATAACTGTTAAAGTCATTAAGTTT
1 AACGATAACTGTTAAAGTCATTAAGTTT
* *
63126627 AACGATAATTGTTAAATTCATTAAGTTT
1 AACGATAACTGTTAAAGTCATTAAGTTT
63126655 TGCTATTTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.39
Consensus pattern (28 bp):
AACGATAACTGTTAAAGTCATTAAGTTT
Found at i:63127300 original size:30 final size:30
Alignment explanation
Indices: 63127260--63127319 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
63127250 GTTATAATAG
*
63127260 GAACTCGTATTAACAAGCTGGATATTATCT
1 GAACTAGTATTAACAAGCTGGATATTATCT
63127290 GAACTAGTATTAACAAGCTGGATATTATCT
1 GAACTAGTATTAACAAGCTGGATATTATCT
63127320 TTCTTTTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (30 bp):
GAACTAGTATTAACAAGCTGGATATTATCT
Found at i:63127315 original size:15 final size:15
Alignment explanation
Indices: 63127267--63127316 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
63127257 TAGGAACTCG
63127267 TATTAACAAGCTGGA
1 TATTAACAAGCTGGA
* *
63127282 TATTATCTGAA-CTAG-
1 TATTAAC--AAGCTGGA
63127297 TATTAACAAGCTGGA
1 TATTAACAAGCTGGA
63127312 TATTA
1 TATTA
63127317 TCTTTCTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 8
0.69 0.10 0.21
Matches are distributed among these distances:
13 2 0.07
14 3 0.11
15 17 0.63
16 3 0.11
17 2 0.07
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (15 bp):
TATTAACAAGCTGGA
Found at i:63134900 original size:2 final size:2
Alignment explanation
Indices: 63134851--63134884 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
63134841 AAAGAGACAC
63134851 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
63134885 GGAAAAAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:63141241 original size:30 final size:30
Alignment explanation
Indices: 63141205--63141284 Score: 88
Period size: 30 Copynumber: 2.7 Consensus size: 30
63141195 TAGGTCTAAG
* *
63141205 TTAAAGGTTAAGGGCTTCTTCGGGTACAAA
1 TTAAAGGTTAAGGGCTTATTCGGATACAAA
* * * *
63141235 TTAAAGGTCAAGAGCTTATTTGGATATAAA
1 TTAAAGGTTAAGGGCTTATTCGGATACAAA
* *
63141265 TTAAAGTTTAAGGCCTTATT
1 TTAAAGGTTAAGGGCTTATT
63141285 TGAGTGTAGT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.35
Consensus pattern (30 bp):
TTAAAGGTTAAGGGCTTATTCGGATACAAA
Found at i:63145230 original size:21 final size:20
Alignment explanation
Indices: 63145196--63145234 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
63145186 GTCCCTGAAT
*
63145196 ATTTTATATTATCACATTTCA
1 ATTTTATATCATCA-ATTTCA
*
63145217 ATTTTGTATCATCAATTT
1 ATTTTATATCATCAATTT
63145235 GTTAGGTGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.31, C:0.13, G:0.03, T:0.54
Consensus pattern (20 bp):
ATTTTATATCATCAATTTCA
Found at i:63150820 original size:18 final size:20
Alignment explanation
Indices: 63150794--63150830 Score: 51
Period size: 18 Copynumber: 1.9 Consensus size: 20
63150784 ACAAATTTAA
63150794 TTTTAAG-TTAA-ATTGGAT
1 TTTTAAGTTTAAGATTGGAT
*
63150812 TTTTGAGTTTAAGATTGGA
1 TTTTAAGTTTAAGATTGGA
63150831 CTAATTTGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 6 0.38
19 4 0.25
20 6 0.38
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.49
Consensus pattern (20 bp):
TTTTAAGTTTAAGATTGGAT
Found at i:63156439 original size:29 final size:28
Alignment explanation
Indices: 63156398--63156923 Score: 424
Period size: 29 Copynumber: 19.6 Consensus size: 28
63156388 TTAGGTTAGG
* *
63156398 GTTAGGGTTAGGGTTTTCATGTAAAATAG
1 GTTAGGGTTAGGGTTTTAAT-TAAAATAA
*
63156427 GTTAGGGTTAGGGTTTTTAATTAAATTAA
1 GTTAGGGTTAGGG-TTTTAATTAAAATAA
63156456 GTTA-GGTTAGGGTTTGTAA-T----TAA
1 GTTAGGGTTAGGGTTT-TAATTAAAATAA
*
63156479 GTTA-GGTTAGGGATTTTAATTAAAATAT
1 GTTAGGGTTAGGG-TTTTAATTAAAATAA
* *
63156507 GTTAGGGTTAGGGTTTTCATGTAAAATAT
1 GTTAGGGTTAGGGTTTTAAT-TAAAATAA
*
63156536 GTTAGGGTTAGGGTTTTTAATTAAATTAA
1 GTTAGGGTTAGGG-TTTTAATTAAAATAA
*
63156565 GTTA-GGTTAGGG-TTT--TT-AATTAA
1 GTTAGGGTTAGGGTTTTAATTAAAATAA
*
63156588 GTTA-GGTTAGGGATTTTAATTAAAATAT
1 GTTAGGGTTAGGG-TTTTAATTAAAATAA
* *
63156616 GTTAGGGTTAGGGTTTTCATGTAAAATAG
1 GTTAGGGTTAGGGTTTTAAT-TAAAATAA
* *
63156645 GTTAGGGTTATGGTTTTTAATTAAATTAA
1 GTTAGGGTTA-GGGTTTTAATTAAAATAA
*
63156674 GTTA-GGTTAGGG-TTT--TT-AATTAA
1 GTTAGGGTTAGGGTTTTAATTAAAATAA
*
63156697 GTTA-GGTTAGGGATTTTAATTAAAATAT
1 GTTAGGGTTAGGG-TTTTAATTAAAATAA
* *
63156725 GTTAGGGTTAGGGTTTTCATGTAAAATAG
1 GTTAGGGTTAGGGTTTTAAT-TAAAATAA
*
63156754 GTTAGGGTTAGGGTTTTTAATTAAATTAA
1 GTTAGGGTTAGGG-TTTTAATTAAAATAA
* **
63156783 ATTA-GGTTAGGGTTTTAATTAAGTTAA
1 GTTAGGGTTAGGGTTTTAATTAAAATAA
*
63156810 GTTAGGG-T----TTTTAATTAAATTAA
1 GTTAGGGTTAGGGTTTTAATTAAAATAA
*
63156833 GTTA-GGTTAAGGTTTTTAATT---A-AA
1 GTTAGGGTT-AGGGTTTTAATTAAAATAA
**
63156857 -TTA-GGTTAGGGTTTTTAATTAAGTTAA
1 GTTAGGGTTAGGG-TTTTAATTAAAATAA
* *
63156884 GTTAGGG-T----TTTTAATTAAATTAG
1 GTTAGGGTTAGGGTTTTAATTAAAATAA
63156907 GTTAGGGTTAGGGTTTT
1 GTTAGGGTTAGGGTTTT
63156924 TAATCAAATA
Statistics
Matches: 418, Mismatches: 33, Indels: 93
0.77 0.06 0.17
Matches are distributed among these distances:
22 5 0.01
23 108 0.26
24 11 0.03
25 6 0.01
26 6 0.01
27 30 0.07
28 90 0.22
29 136 0.33
30 26 0.06
ACGTcount: A:0.30, C:0.01, G:0.25, T:0.44
Consensus pattern (28 bp):
GTTAGGGTTAGGGTTTTAATTAAAATAA
Found at i:63156476 original size:23 final size:23
Alignment explanation
Indices: 63156450--63156915 Score: 268
Period size: 23 Copynumber: 17.9 Consensus size: 23
63156440 TTTTTAATTA
*
63156450 AATTAAGTTAGGTTAGGGTTTGT
1 AATTAAGTTAGGTTAGGGTTTTT
*
63156473 AATTAAGTTAGGTTAGGGATTTT
1 AATTAAGTTAGGTTAGGGTTTTT
63156496 AATTAAAATATGTTAGGGTTAGGGTTTTCATGT
1 AATT---A-A-GTTA-GGTTAGGG-TTT--T-T
* *
63156529 AAAATATGTTAGGGTTAGGGTTTTTAATT
1 -AATTAAGTTA-GGTTAGGG-T-TT--TT
63156558 AAATTAAGTTAGGTTAGGGTTTTT
1 -AATTAAGTTAGGTTAGGGTTTTT
*
63156582 AATTAAGTTAGGTTAGGGATTTT
1 AATTAAGTTAGGTTAGGGTTTTT
63156605 AATTAAAATATGTTAGGGTTAGGGTTTTCATGT
1 AATT---A-A-GTTA-GGTTAGGG-TTT--T-T
* * *
63156638 AAAATAGGTTAGGGTTATGGTTTTT
1 -AATTAAGTTA-GGTTAGGGTTTTT
63156663 AATTAAATTAAGTTAGGTTAGGGTTTTT
1 -A----ATTAAGTTAGGTTAGGGTTTTT
*
63156691 AATTAAGTTAGGTTAGGGATTTT
1 AATTAAGTTAGGTTAGGGTTTTT
63156714 AATTAAAATATGTTAGGGTTAGGGTTTTCATGT
1 AATT---A-A-GTTA-GGTTAGGG-TTT--T-T
* *
63156747 AAAATAGGTTAGGGTTAGGGTTTTTAATT
1 -AATTAAGTTA-GGTTAGGG-TT-T--TT
*
63156776 AAATTAAATTAGGTTAGGG-TTTT
1 -AATTAAGTTAGGTTAGGGTTTTT
*
63156799 AATTAAGTTAAGTTAGGGTTTTTAATT
1 AATTAAGTTAGGTTAGGG--TTT--TT
*
63156826 AAATTAAGTTAGGTTAAGGTTTTT
1 -AATTAAGTTAGGTTAGGGTTTTT
*
63156850 AATTAAATTAGGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTTTT
*
63156873 AATTAAGTTAAGTTAGGGTTTTT
1 AATTAAGTTAGGTTAGGGTTTTT
*
63156896 AATTAAATTAGGTTAGGGTT
1 AATTAAGTTAGGTTAGGGTT
63156916 AGGGTTTTTA
Statistics
Matches: 364, Mismatches: 34, Indels: 90
0.75 0.07 0.18
Matches are distributed among these distances:
22 16 0.04
23 138 0.38
24 4 0.01
25 6 0.02
26 10 0.03
27 7 0.02
28 59 0.16
29 93 0.26
30 13 0.04
31 3 0.01
32 3 0.01
33 3 0.01
34 9 0.02
ACGTcount: A:0.31, C:0.01, G:0.24, T:0.44
Consensus pattern (23 bp):
AATTAAGTTAGGTTAGGGTTTTT
Found at i:63156533 original size:109 final size:109
Alignment explanation
Indices: 63156398--63156913 Score: 817
Period size: 109 Copynumber: 4.9 Consensus size: 109
63156388 TTAGGTTAGG
63156398 GTTAGGGTTAGGGTTTTCATGTAAAATAGGTTAGGGTTAGGGTTTTTAATTAAATTAAGTTAGGT
1 GTTAGGGTTAGGGTTTTCATGTAAAATAGGTTAGGGTTAGGGTTTTTAATTAAATTAAGTTAGGT
*
63156463 TAGGGTTTGTAATTAAGTTAGGTTAGGGATTTTAATTAAAATAT
66 TAGGGTTTTTAATTAAGTTAGGTTAGGGATTTTAATTAAAATAT
*
63156507 GTTAGGGTTAGGGTTTTCATGTAAAATATGTTAGGGTTAGGGTTTTTAATTAAATTAAGTTAGGT
1 GTTAGGGTTAGGGTTTTCATGTAAAATAGGTTAGGGTTAGGGTTTTTAATTAAATTAAGTTAGGT
63156572 TAGGGTTTTTAATTAAGTTAGGTTAGGGATTTTAATTAAAATAT
66 TAGGGTTTTTAATTAAGTTAGGTTAGGGATTTTAATTAAAATAT
*
63156616 GTTAGGGTTAGGGTTTTCATGTAAAATAGGTTAGGGTTATGGTTTTTAATTAAATTAAGTTAGGT
1 GTTAGGGTTAGGGTTTTCATGTAAAATAGGTTAGGGTTAGGGTTTTTAATTAAATTAAGTTAGGT
63156681 TAGGGTTTTTAATTAAGTTAGGTTAGGGATTTTAATTAAAATAT
66 TAGGGTTTTTAATTAAGTTAGGTTAGGGATTTTAATTAAAATAT
*
63156725 GTTAGGGTTAGGGTTTTCATGTAAAATAGGTTAGGGTTAGGGTTTTTAATTAAATTAAATTAGGT
1 GTTAGGGTTAGGGTTTTCATGTAAAATAGGTTAGGGTTAGGGTTTTTAATTAAATTAAGTTAGGT
* * * *
63156790 TAGGG-TTTTAATTAAGTTAAGTTAGGGTTTTTAATTAAATTAA
66 TAGGGTTTTTAATTAAGTTAGGTTAGGGATTTTAATTAAAATAT
* * *
63156833 GTTA-GGTTAAGGTTTTTAAT-T--AA-A--TTA-GGTTAGGG--TTT--TT-AATTAAGTTAAG
1 GTTAGGGTT-AGGGTTTTCATGTAAAATAGGTTAGGGTTAGGGTTTTTAATTAAATTAAGTTAGG
*
63156885 TTAGGGTTTTTAATTAAATTAGGTTAGGG
65 TTAGGGTTTTTAATTAAGTTAGGTTAGGG
63156914 TTAGGGTTTT
Statistics
Matches: 389, Mismatches: 16, Indels: 16
0.92 0.04 0.04
Matches are distributed among these distances:
96 16 0.04
97 22 0.06
99 3 0.01
101 8 0.02
102 3 0.01
104 1 0.00
105 2 0.01
107 5 0.01
108 47 0.12
109 282 0.72
ACGTcount: A:0.30, C:0.01, G:0.25, T:0.44
Consensus pattern (109 bp):
GTTAGGGTTAGGGTTTTCATGTAAAATAGGTTAGGGTTAGGGTTTTTAATTAAATTAAGTTAGGT
TAGGGTTTTTAATTAAGTTAGGTTAGGGATTTTAATTAAAATAT
Found at i:63157436 original size:16 final size:16
Alignment explanation
Indices: 63157415--63157446 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
63157405 AAGGATACAT
63157415 GTACGGATTAGGGTAC
1 GTACGGATTAGGGTAC
*
63157431 GTACGGGTTAGGGTAC
1 GTACGGATTAGGGTAC
63157447 ATATAAGGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.12, G:0.41, T:0.25
Consensus pattern (16 bp):
GTACGGATTAGGGTAC
Found at i:63159103 original size:14 final size:15
Alignment explanation
Indices: 63159086--63159119 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
63159076 AATAAATATC
63159086 TAAAAATA-CATAAA
1 TAAAAATATCATAAA
*
63159100 TAAAAATATCTTAAA
1 TAAAAATATCATAAA
63159115 TAAAA
1 TAAAA
63159120 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAATATCATAAA
Found at i:63159248 original size:28 final size:29
Alignment explanation
Indices: 63159217--63159274 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 29
63159207 TTGAAAATAT
63159217 TAAAAAA-TTTAAAATTATT-TTAAAAAAA
1 TAAAAAATTTTAAAATT-TTCTTAAAAAAA
63159245 TAAAAAATTTTAAAATTTTCTTAAAAAAA
1 TAAAAAATTTTAAAATTTTCTTAAAAAAA
63159274 T
1 T
63159275 GAAATTTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 9 0.32
29 19 0.68
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (29 bp):
TAAAAAATTTTAAAATTTTCTTAAAAAAA
Found at i:63159254 original size:18 final size:19
Alignment explanation
Indices: 63159210--63159259 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
63159200 GCAATTGTTG
* *
63159210 AAAATATTAAAAAATTTAA
1 AAAATTTTAAAAAATATAA
*
63159229 AATTATTTTAAAAAA-ATAA
1 AA-AATTTTAAAAAATATAA
63159248 AAAATTTTAAAA
1 AAAATTTTAAAA
63159260 TTTTCTTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 9 0.35
19 7 0.27
20 10 0.38
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
AAAATTTTAAAAAATATAA
Found at i:63159365 original size:22 final size:21
Alignment explanation
Indices: 63159337--63159406 Score: 95
Period size: 22 Copynumber: 3.2 Consensus size: 21
63159327 AATTGAGAGT
63159337 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTT-GAAGGAAA
*
63159359 TTGAGAGAATTTTTGAAGGGAA
1 TTGAGAGAA-TTTTGAAGGAAA
*
63159381 TTGAGAGAATCTTTGAAGGACA
1 TTGAGAGAAT-TTTGAAGGAAA
63159403 TTGA
1 TTGA
63159407 TGTTGAATTT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
21 1 0.02
22 38 0.88
23 4 0.09
ACGTcount: A:0.37, C:0.03, G:0.30, T:0.30
Consensus pattern (21 bp):
TTGAGAGAATTTTGAAGGAAA
Found at i:63160189 original size:86 final size:86
Alignment explanation
Indices: 63160084--63160246 Score: 254
Period size: 86 Copynumber: 1.9 Consensus size: 86
63160074 TTTAATGTTG
* * * *
63160084 ATCTTAATTCATTGTGATGTATGCATCCACAATCCCAATTTAAATCTTGAGTTTGGTAAGTTTTT
1 ATCTTAACTAATTGTGATGTATGCATCCACAATCCCAATTTAAATCTCGAGTTTGGTAAGCTTTT
63160149 ATGTCAGCTTTAAGTAGAATT
66 ATGTCAGCTTTAAGTAGAATT
* ***
63160170 ATCTTAACTAATTGTGATGTATGCATCCGCAATTTTAATTTAAATCTCGAGTTTGGTAAGCTTTT
1 ATCTTAACTAATTGTGATGTATGCATCCACAATCCCAATTTAAATCTCGAGTTTGGTAAGCTTTT
63160235 ATGTCAGCTTTA
66 ATGTCAGCTTTA
63160247 GGTGGAACTA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
86 69 1.00
ACGTcount: A:0.28, C:0.14, G:0.15, T:0.42
Consensus pattern (86 bp):
ATCTTAACTAATTGTGATGTATGCATCCACAATCCCAATTTAAATCTCGAGTTTGGTAAGCTTTT
ATGTCAGCTTTAAGTAGAATT
Found at i:63161082 original size:12 final size:13
Alignment explanation
Indices: 63161065--63161093 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
63161055 AGTTTGTTTG
63161065 AAATAAAT-AAAT
1 AAATAAATAAAAT
63161077 AAATAAATAAAAT
1 AAATAAATAAAAT
63161090 AAAT
1 AAAT
63161094 CCATGTATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
AAATAAATAAAAT
Found at i:63162174 original size:11 final size:11
Alignment explanation
Indices: 63162158--63162194 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
63162148 AAAAATTAAA
63162158 AAAAGTATTTT
1 AAAAGTATTTT
63162169 AAAAGTATTTT
1 AAAAGTATTTT
*
63162180 AAAAATATTTT
1 AAAAGTATTTT
63162191 AAAA
1 AAAA
63162195 TTAAAAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (11 bp):
AAAAGTATTTT
Found at i:63162218 original size:38 final size:38
Alignment explanation
Indices: 63162169--63162286 Score: 168
Period size: 38 Copynumber: 3.1 Consensus size: 38
63162159 AAAGTATTTT
63162169 AAAAGTATTTTAAAAATATTTTAAAATTAAAAAATTAA
1 AAAAGTATTTTAAAAATATTTTAAAATTAAAAAATTAA
*
63162207 AAAAGTATTTTAAAAA-A-ATTAAAATTTAAAAAATTTAAA
1 AAAAGTATTTTAAAAATATTTTAAAA-TTAAAAAA-TT-AA
* *
63162246 AAAAGTATTTTAAAAGTATTTTAAAATTAAAAAAATAA
1 AAAAGTATTTTAAAAATATTTTAAAATTAAAAAATTAA
63162284 AAA
1 AAA
63162287 TATTTATTAT
Statistics
Matches: 71, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
36 6 0.08
37 9 0.13
38 23 0.32
39 18 0.25
40 9 0.13
41 6 0.08
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (38 bp):
AAAAGTATTTTAAAAATATTTTAAAATTAAAAAATTAA
Found at i:63162234 original size:16 final size:16
Alignment explanation
Indices: 63162215--63162246 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
63162205 AAAAAAGTAT
63162215 TTTAAAAAAATTAAAA
1 TTTAAAAAAATTAAAA
*
63162231 TTTAAAAAATTTAAAA
1 TTTAAAAAAATTAAAA
63162247 AAAGTATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
TTTAAAAAAATTAAAA
Found at i:63162249 original size:10 final size:9
Alignment explanation
Indices: 63162177--63162248 Score: 53
Period size: 9 Copynumber: 8.0 Consensus size: 9
63162167 TTAAAAGTAT
63162177 TTTAAAAATA
1 TTTAAAAA-A
*
63162187 TTT-TAAAA
1 TTTAAAAAA
63162195 -TTAAAAAA
1 TTTAAAAAA
*
63162203 TTAAAAAAGTA
1 TTTAAAAA--A
63162214 TTTTAAAAAA
1 -TTTAAAAAA
*
63162224 ATT--AAAA
1 TTTAAAAAA
63162231 TTTAAAAAA
1 TTTAAAAAA
63162240 TTTAAAAAA
1 TTTAAAAAA
63162249 AGTATTTTAA
Statistics
Matches: 49, Mismatches: 6, Indels: 15
0.70 0.09 0.21
Matches are distributed among these distances:
7 8 0.16
8 5 0.10
9 24 0.49
10 4 0.08
11 1 0.02
12 7 0.14
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (9 bp):
TTTAAAAAA
Found at i:63162260 original size:11 final size:11
Alignment explanation
Indices: 63162246--63162271 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
63162236 AAAATTTAAA
63162246 AAAAGTATTTT
1 AAAAGTATTTT
63162257 AAAAGTATTTT
1 AAAAGTATTTT
63162268 AAAA
1 AAAA
63162272 TTAAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (11 bp):
AAAAGTATTTT
Found at i:63163728 original size:21 final size:21
Alignment explanation
Indices: 63163704--63163775 Score: 54
Period size: 21 Copynumber: 3.4 Consensus size: 21
63163694 AGTCAAGCTT
63163704 AATATTATTATATTAATAAAA
1 AATATTATTATATTAATAAAA
* * * * *
63163725 AATATTTTTAAAAATATTTAAA
1 AATATTATT-ATATTAATAAAA
* ** *
63163747 AATAATAAAATATTAATATAA
1 AATATTATTATATTAATAAAA
63163768 AATATTAT
1 AATATTAT
63163776 AATTTTTAAT
Statistics
Matches: 34, Mismatches: 16, Indels: 2
0.65 0.31 0.04
Matches are distributed among these distances:
21 21 0.62
22 13 0.38
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
AATATTATTATATTAATAAAA
Found at i:63166902 original size:13 final size:13
Alignment explanation
Indices: 63166858--63166890 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
63166848 TCATGGTTTG
*
63166858 AAGAAGAAGAAAA
1 AAGAAAAAGAAAA
63166871 AAGAAAAAG-AAA
1 AAGAAAAAGAAAA
63166883 AAGAAAAA
1 AAGAAAAA
63166891 AGAGAATGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (13 bp):
AAGAAAAAGAAAA
Found at i:63168570 original size:6 final size:6
Alignment explanation
Indices: 63168559--63168617 Score: 118
Period size: 6 Copynumber: 9.8 Consensus size: 6
63168549 TTTATGAACA
63168559 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
63168607 ATATGT ATATG
1 ATATGT ATATG
63168618 ATTACAGGAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 53 1.00
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (6 bp):
ATATGT
Found at i:63171632 original size:27 final size:29
Alignment explanation
Indices: 63171602--63171672 Score: 110
Period size: 30 Copynumber: 2.5 Consensus size: 29
63171592 ACTTTTCTTA
*
63171602 CAAAACTTTTACTCC-T-CACTTTCCCTT
1 CAAAACTTTTACTCCTTCCACTTTCCCTC
63171629 CAAAACTTTTACTCCTTCCCACTTTCCCTC
1 CAAAACTTTTACTCCTT-CCACTTTCCCTC
63171659 CAAAACTTTTACTC
1 CAAAACTTTTACTC
63171673 TCCTCTCATC
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 15 0.38
28 1 0.03
30 24 0.60
ACGTcount: A:0.24, C:0.38, G:0.00, T:0.38
Consensus pattern (29 bp):
CAAAACTTTTACTCCTTCCACTTTCCCTC
Found at i:63184968 original size:18 final size:17
Alignment explanation
Indices: 63184941--63184975 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
63184931 CCTATATTCA
63184941 ATATACTTTTCATTCCT
1 ATATACTTTTCATTCCT
*
63184958 ATATCACTTTTCTTTCCT
1 ATAT-ACTTTTCATTCCT
63184976 TTTTTTTGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.20, C:0.26, G:0.00, T:0.54
Consensus pattern (17 bp):
ATATACTTTTCATTCCT
Found at i:63194942 original size:4 final size:4
Alignment explanation
Indices: 63194933--63194975 Score: 86
Period size: 4 Copynumber: 10.8 Consensus size: 4
63194923 TTCTAGAACA
63194933 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
63194976 TCCGGCAGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 39 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:63195306 original size:20 final size:20
Alignment explanation
Indices: 63195281--63195350 Score: 79
Period size: 20 Copynumber: 3.5 Consensus size: 20
63195271 GCATGTATGA
* *
63195281 ATGTATGTGTGACAACATAT
1 ATGTATGTATGACAACATCT
*
63195301 ATGTATGTATGA-AACTCTCT
1 ATGTATGTATGACAAC-ATCT
*
63195321 ATGTATGTATGACACCATCT
1 ATGTATGTATGACAACATCT
*
63195341 ATGCATGTAT
1 ATGTATGTAT
63195351 TGAATTCCAC
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
19 3 0.07
20 37 0.88
21 2 0.05
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.37
Consensus pattern (20 bp):
ATGTATGTATGACAACATCT
Found at i:63195491 original size:24 final size:24
Alignment explanation
Indices: 63195456--63195510 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
63195446 TACTCAGAGC
* *
63195456 ATGTATGTATGACACC-ATCTATAT
1 ATGTATGAATGACACCGAT-TACAT
63195480 ATGTATGAATGACACCGATTACAT
1 ATGTATGAATGACACCGATTACAT
63195504 ATGTATG
1 ATGTATG
63195511 TATCGAATTC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 26 0.93
25 2 0.07
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.35
Consensus pattern (24 bp):
ATGTATGAATGACACCGATTACAT
Found at i:63202434 original size:46 final size:46
Alignment explanation
Indices: 63202331--63203090 Score: 1240
Period size: 46 Copynumber: 16.6 Consensus size: 46
63202321 TACTTATGAT
* *
63202331 CACTTATCAC-TTCTC-CCTGATCAGATAAGTGTAGCT-A-GACTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATG-CTAC
* **
63202374 TACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAACTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
* **
63202420 TACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAACTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
* * *
63202466 TACTTATCACTTTGTCACTTGATCAGATAAGTGTAACTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
* * *
63202512 CATTTATCACTTTATCACTTGATCAGATAAGTGTAGCTAATGCCAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
*
63202558 CACTTATCACTTTGTCACTTAATCAGATAAGTGTAGCTAATGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
* *
63202604 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAACTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
* *
63202650 CATTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCCAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
*
63202696 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCCAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
63202742 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
* *
63202788 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAATGCCAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
*
63202834 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCCAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
*
63202880 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCCAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
*
63202926 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAATGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
*
63202972 CACTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTAATGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
*
63203018 CACTTATCACTTTGTCACTTGATCAAATAAGTGTAGCTAATGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
63203064 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
63203091 AGTACTCAAT
Statistics
Matches: 677, Mismatches: 36, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
43 9 0.01
44 4 0.01
45 20 0.03
46 644 0.95
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
Found at i:63206114 original size:19 final size:17
Alignment explanation
Indices: 63206081--63206113 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
63206071 ATATATTTTA
63206081 TTTTTAATCAAATATAC
1 TTTTTAATCAAATATAC
63206098 TTTTTAATCAAATATA
1 TTTTTAATCAAATATA
63206114 TATTAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTTTAATCAAATATAC
Found at i:63207308 original size:21 final size:22
Alignment explanation
Indices: 63207279--63207320 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
63207269 CCAAACCCCC
63207279 AAACATTTTTACTT-TTCTTACA
1 AAACA-TTTTACTTATTCTTACA
63207301 AAAC-TTTTACTTATTCTTAC
1 AAACATTTTACTTATTCTTAC
63207321 TTTTCCTCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.42
21 7 0.37
22 4 0.21
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (22 bp):
AAACATTTTACTTATTCTTACA
Found at i:63207935 original size:17 final size:17
Alignment explanation
Indices: 63207866--63207935 Score: 54
Period size: 17 Copynumber: 4.0 Consensus size: 17
63207856 CAATTTCACA
*
63207866 TTTTATCTTTAAAATAAT
1 TTTTATATTTAAAAT-AT
**
63207884 TTTTAT-TAAAAATTATAT
1 TTTTATATTTAAA--ATAT
*
63207902 TTTTATATTTAATATAT
1 TTTTATATTTAAAATAT
63207919 TTTTA-ATTTCAAAATAT
1 TTTTATATTT-AAAATAT
63207936 ATAATGATAA
Statistics
Matches: 42, Mismatches: 6, Indels: 9
0.74 0.11 0.16
Matches are distributed among these distances:
16 4 0.10
17 19 0.45
18 14 0.33
19 5 0.12
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (17 bp):
TTTTATATTTAAAATAT
Found at i:63210199 original size:16 final size:16
Alignment explanation
Indices: 63210180--63210211 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
63210170 ATATATGAGG
63210180 TATGCTACATATCACA
1 TATGCTACATATCACA
63210196 TATGCTACATATCACA
1 TATGCTACATATCACA
63210212 ATTTGGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (16 bp):
TATGCTACATATCACA
Found at i:63213079 original size:20 final size:19
Alignment explanation
Indices: 63213046--63213101 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
63213036 GAAAAAATAA
*
63213046 TAAAATAAATAAATAATACAT
1 TAAATTAAA-AAATAATAC-T
63213067 TAAATTAAAAAATAACT-CT
1 TAAATTAAAAAATAA-TACT
*
63213086 TAATTTAAAAAA-AATA
1 TAAATTAAAAAATAATA
63213102 AACATAATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
17 1 0.03
18 2 0.06
19 12 0.39
20 7 0.23
21 9 0.29
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.30
Consensus pattern (19 bp):
TAAATTAAAAAATAATACT
Found at i:63222406 original size:23 final size:22
Alignment explanation
Indices: 63222358--63222407 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 22
63222348 TTTAGATTAG
*
63222358 TTTAATATTATTTAATTAAATA
1 TTTAATATTATTTAATCAAATA
*
63222380 TTTAA-ATTAGTTTAAATCAAATT
1 TTTAATATTA-TTT-AATCAAATA
63222403 TTTAA
1 TTTAA
63222408 CCAATTCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 4 0.17
22 8 0.33
23 12 0.50
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (22 bp):
TTTAATATTATTTAATCAAATA
Found at i:63226902 original size:4 final size:4
Alignment explanation
Indices: 63226893--63226931 Score: 78
Period size: 4 Copynumber: 9.8 Consensus size: 4
63226883 TAGTAAGATA
63226893 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
63226932 ATTGTTTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:63233168 original size:20 final size:20
Alignment explanation
Indices: 63233145--63233182 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
63233135 CTGGTTTTCT
*
63233145 AATTTTTTAATGTATTTTTA
1 AATTTTTTAATGAATTTTTA
*
63233165 AATTTTTTTATGAATTTT
1 AATTTTTTAATGAATTTT
63233183 CCCTTTTTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (20 bp):
AATTTTTTAATGAATTTTTA
Found at i:63235306 original size:16 final size:15
Alignment explanation
Indices: 63235280--63235334 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
63235270 ATTAAGATTT
*
63235280 TAAATTTAAAAAATA
1 TAAAATTAAAAAATA
63235295 TAGAAATT-AAAAATGA
1 TA-AAATTAAAAAAT-A
*
63235311 TAAATTTAAAAAATA
1 TAAAATTAAAAAATA
63235326 T-AAATTAAA
1 TAAAATTAAA
63235335 TACATAACTC
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
14 7 0.21
15 14 0.41
16 13 0.38
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (15 bp):
TAAAATTAAAAAATA
Found at i:63243149 original size:31 final size:29
Alignment explanation
Indices: 63243080--63243153 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
63243070 ACAACGTGAT
**
63243080 AACATAAGTGACTAAAACGTAACATTTCA
1 AACATAAGTGACTAAAACGTAACATGCCA
*
63243109 AACATAAGTGACTAAAATGTAACATGAGCCA
1 AACATAAGTGACTAAAACGTAACAT--GCCA
*
63243140 AACAAAAGTGACTA
1 AACATAAGTGACTA
63243154 TTTTAGAAGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 24 0.62
31 15 0.38
ACGTcount: A:0.50, C:0.16, G:0.14, T:0.20
Consensus pattern (29 bp):
AACATAAGTGACTAAAACGTAACATGCCA
Found at i:63256687 original size:31 final size:30
Alignment explanation
Indices: 63256652--63256750 Score: 83
Period size: 31 Copynumber: 3.2 Consensus size: 30
63256642 TATAAAATGA
*
63256652 TCATTGAACTATTTGAAGGTTTTCATTTAAG
1 TCATTGAACTATTTGAA-GTTTTTATTTAAG
* * *
63256683 TCATT-AAGCTAATCTGGAGTTTTTAGTTAAG
1 TCATTGAA-CT-ATTTGAAGTTTTTATTTAAG
* **
63256714 TCACTGAACTATTCAAATGTTTTTATTTAAG
1 TCATTGAACTATTTGAA-GTTTTTATTTAAG
*
63256745 ACATTG
1 TCATTG
63256751 GGTTATTAAG
Statistics
Matches: 52, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
30 5 0.10
31 40 0.77
32 7 0.13
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.43
Consensus pattern (30 bp):
TCATTGAACTATTTGAAGTTTTTATTTAAG
Found at i:63275689 original size:6 final size:6
Alignment explanation
Indices: 63275678--63275702 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
63275668 CTACATTTAC
63275678 TTTAAT TTTAAT TTTAAT TTTAAT T
1 TTTAAT TTTAAT TTTAAT TTTAAT T
63275703 CATTATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TTTAAT
Found at i:63286410 original size:14 final size:14
Alignment explanation
Indices: 63286386--63286422 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
63286376 TGAACCATAG
63286386 TCCTGAAATCTCAAA
1 TCCT-AAATCTCAAA
*
63286401 TCTTAAATCTCAAA
1 TCCTAAATCTCAAA
63286415 TCCTAAAT
1 TCCTAAAT
63286423 TTCGAACCTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
14 17 0.85
15 3 0.15
ACGTcount: A:0.41, C:0.24, G:0.03, T:0.32
Consensus pattern (14 bp):
TCCTAAATCTCAAA
Found at i:63288346 original size:19 final size:19
Alignment explanation
Indices: 63288319--63288357 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
63288309 CTGATTTCGT
63288319 TAAAGAAAATTTAAAAAAA
1 TAAAGAAAATTTAAAAAAA
*
63288338 TAAATAAAATTTAAAAAAA
1 TAAAGAAAATTTAAAAAAA
63288357 T
1 T
63288358 TTAAATGAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.26
Consensus pattern (19 bp):
TAAAGAAAATTTAAAAAAA
Found at i:63288356 original size:10 final size:11
Alignment explanation
Indices: 63288318--63288362 Score: 53
Period size: 10 Copynumber: 4.5 Consensus size: 11
63288308 GCTGATTTCG
63288318 TTAAAGAAAAT
1 TTAAAGAAAAT
63288329 TTAAA-AAAA-
1 TTAAAGAAAAT
*
63288338 -TAAATAAAAT
1 TTAAAGAAAAT
63288348 TTAAA-AAAAT
1 TTAAAGAAAAT
63288358 TTAAA
1 TTAAA
63288363 TGAGATTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
8 4 0.13
9 4 0.13
10 14 0.45
11 9 0.29
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (11 bp):
TTAAAGAAAAT
Found at i:63288517 original size:16 final size:16
Alignment explanation
Indices: 63288496--63288548 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
63288486 ACTTGAATAA
63288496 TTAAAATGAAAACGCC
1 TTAAAATGAAAACGCC
63288512 TTAAAAGTTGAATAA----
1 TTAAAA--TGAA-AACGCC
63288527 TTAAAATGAAAACGCC
1 TTAAAATGAAAACGCC
63288543 TTAAAA
1 TTAAAA
63288549 GTAGAGTGAC
Statistics
Matches: 30, Mismatches: 0, Indels: 14
0.68 0.00 0.32
Matches are distributed among these distances:
12 2 0.07
13 4 0.13
15 6 0.20
16 12 0.40
18 4 0.13
19 2 0.07
ACGTcount: A:0.53, C:0.11, G:0.11, T:0.25
Consensus pattern (16 bp):
TTAAAATGAAAACGCC
Found at i:63288523 original size:31 final size:31
Alignment explanation
Indices: 63288488--63288550 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
63288478 GATTTAGCAC
63288488 TTGAATAATTAAAATGAAAACGCCTTAAAAG
1 TTGAATAATTAAAATGAAAACGCCTTAAAAG
63288519 TTGAATAATTAAAATGAAAACGCCTTAAAAG
1 TTGAATAATTAAAATGAAAACGCCTTAAAAG
63288550 T
1 T
63288551 AGAGTGACCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.51, C:0.10, G:0.13, T:0.27
Consensus pattern (31 bp):
TTGAATAATTAAAATGAAAACGCCTTAAAAG
Found at i:63296127 original size:11 final size:11
Alignment explanation
Indices: 63296113--63296142 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
63296103 AATAAATATA
*
63296113 TTATAATATTT
1 TTATAACATTT
63296124 TTATAACATTT
1 TTATAACATTT
63296135 TTATAACA
1 TTATAACA
63296143 CAAATTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (11 bp):
TTATAACATTT
Found at i:63299671 original size:7 final size:7
Alignment explanation
Indices: 63299659--63299684 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
63299649 AATTTAAATT
63299659 TTTTCAC
1 TTTTCAC
63299666 TTTTCAC
1 TTTTCAC
63299673 TTTTCAC
1 TTTTCAC
63299680 TTTTC
1 TTTTC
63299685 GAATTTTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.27, G:0.00, T:0.62
Consensus pattern (7 bp):
TTTTCAC
Found at i:63303024 original size:77 final size:77
Alignment explanation
Indices: 63302897--63303056 Score: 302
Period size: 77 Copynumber: 2.1 Consensus size: 77
63302887 TCCCTCAATT
63302897 TTTTACAACTTAGTTTCACACCCCATGAAATAACTTTACATGTCACATATCTGCGAACCAAAATC
1 TTTTACAACTTAGTTTCACACCCCATGAAATAACTTTACATGTCACATATCTGCGAACCAAAATC
63302962 TAAACAATTTTC
66 TAAACAATTTTC
* *
63302974 TTTTACAACTTAGTTTCACGCCCCATGAAATAGCTTTACATGTCACATATCTGCGAACCAAAATC
1 TTTTACAACTTAGTTTCACACCCCATGAAATAACTTTACATGTCACATATCTGCGAACCAAAATC
63303039 TAAACAATTTTC
66 TAAACAATTTTC
63303051 TTTTAC
1 TTTTAC
63303057 GATCTTCGAC
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
77 81 1.00
ACGTcount: A:0.34, C:0.24, G:0.07, T:0.34
Consensus pattern (77 bp):
TTTTACAACTTAGTTTCACACCCCATGAAATAACTTTACATGTCACATATCTGCGAACCAAAATC
TAAACAATTTTC
Found at i:63303833 original size:6 final size:6
Alignment explanation
Indices: 63303822--63303856 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
63303812 CTCAACAACT
63303822 ACAGCA ACAGCA ACAGCA ACAGCA ACAGCA ACAGC
1 ACAGCA ACAGCA ACAGCA ACAGCA ACAGCA ACAGC
63303857 CGGTTTGGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.49, C:0.34, G:0.17, T:0.00
Consensus pattern (6 bp):
ACAGCA
Found at i:63303835 original size:18 final size:18
Alignment explanation
Indices: 63303814--63303854 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
63303804 GCCGCAAACT
*
63303814 CAACAACTACAGCAACAG
1 CAACAACAACAGCAACAG
*
63303832 CAACAGCAACAGCAACAG
1 CAACAACAACAGCAACAG
63303850 CAACA
1 CAACA
63303855 GCCGGTTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.51, C:0.34, G:0.12, T:0.02
Consensus pattern (18 bp):
CAACAACAACAGCAACAG
Found at i:63307271 original size:11 final size:11
Alignment explanation
Indices: 63307255--63307280 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
63307245 AAATGATGAC
63307255 TGTATTAAGTG
1 TGTATTAAGTG
63307266 TGTATTAAGTG
1 TGTATTAAGTG
63307277 TGTA
1 TGTA
63307281 AGTGTGTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.46
Consensus pattern (11 bp):
TGTATTAAGTG
Found at i:63308011 original size:16 final size:16
Alignment explanation
Indices: 63307978--63308011 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
63307968 TAATTCTCTG
**
63307978 TACAAGCTGCTTTTTT
1 TACAAGCTGCTTGGTT
63307994 TACAAGCTGCTTGGTT
1 TACAAGCTGCTTGGTT
63308010 TA
1 TA
63308012 ATGTTGTTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.44
Consensus pattern (16 bp):
TACAAGCTGCTTGGTT
Found at i:63320209 original size:25 final size:26
Alignment explanation
Indices: 63320162--63320211 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
63320152 AGGTCAAGAG
63320162 TCAAATTTAACAAAAAAGGAATAAAGT
1 TCAAATTTAACAAAAAA-GAATAAAGT
63320189 TCAAA-TTAACAAAAATA-AATAAA
1 TCAAATTTAACAAAAA-AGAATAAA
63320212 TAAATAAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 6 0.27
26 10 0.45
27 6 0.27
ACGTcount: A:0.64, C:0.08, G:0.06, T:0.22
Consensus pattern (26 bp):
TCAAATTTAACAAAAAAGAATAAAGT
Found at i:63331465 original size:7 final size:7
Alignment explanation
Indices: 63331453--63331478 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
63331443 TGCTTAATTC
63331453 TCCAATA
1 TCCAATA
63331460 TCCAATA
1 TCCAATA
63331467 TCCAATA
1 TCCAATA
63331474 TCCAA
1 TCCAA
63331479 CGTATTGTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.31, G:0.00, T:0.27
Consensus pattern (7 bp):
TCCAATA
Found at i:63336237 original size:21 final size:21
Alignment explanation
Indices: 63336195--63336237 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
63336185 TATTTACATA
**
63336195 TTTTATAAATATTTAAATAAT
1 TTTTATAAATAAATAAATAAT
63336216 TTTTATCAAATAAATAAA-AAT
1 TTTTAT-AAATAAATAAATAAT
63336237 T
1 T
63336238 CAATGCTCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (21 bp):
TTTTATAAATAAATAAATAAT
Found at i:63336873 original size:21 final size:20
Alignment explanation
Indices: 63336831--63336873 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
63336821 ATTAATTTTA
* *
63336831 ATTTTTTAATCAATTTATTT
1 ATTTTTTAATCAATTAAATT
*
63336851 ATTTTTTAATTATATTAAATT
1 ATTTTTTAATCA-ATTAAATT
63336872 AT
1 AT
63336874 GATACATTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (20 bp):
ATTTTTTAATCAATTAAATT
Found at i:63342661 original size:33 final size:33
Alignment explanation
Indices: 63342605--63342728 Score: 121
Period size: 33 Copynumber: 3.8 Consensus size: 33
63342595 GCTAGTGCTG
* *
63342605 TAAGCAGGAC-AGTTAGTACGGATGATGCTCCTT
1 TAAGCAGGACAAG-TAGCAGGGATGATGCTCCTT
*
63342638 TAAGCAGGACAAGTAGCAGGGATG-TG-T-CTA
1 TAAGCAGGACAAGTAGCAGGGATGATGCTCCTT
* * * * *
63342668 TAAGCCGGCCAACTAGTAGGGATGATGCCCCTT
1 TAAGCAGGACAAGTAGCAGGGATGATGCTCCTT
* *
63342701 CAAGCAGGCCAAGTAGCAGGGATGATGC
1 TAAGCAGGACAAGTAGCAGGGATGATGC
63342729 CCCTATAATC
Statistics
Matches: 74, Mismatches: 13, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
30 22 0.30
31 3 0.04
32 2 0.03
33 45 0.61
34 2 0.03
ACGTcount: A:0.29, C:0.20, G:0.31, T:0.20
Consensus pattern (33 bp):
TAAGCAGGACAAGTAGCAGGGATGATGCTCCTT
Found at i:63342729 original size:33 final size:32
Alignment explanation
Indices: 63342624--63342741 Score: 116
Period size: 33 Copynumber: 3.7 Consensus size: 32
63342614 CAGTTAGTAC
* *
63342624 GGATGATGCTCCTTTAAGCAGGACAAGTAGCAG
1 GGATGATGC-CCCTTAAGCAGGCCAAGTAGCAG
* * * *
63342657 GGATG-TG--TCTATAAGCCGGCCAACTAGTAG
1 GGATGATGCCCCT-TAAGCAGGCCAAGTAGCAG
63342687 GGATGATGCCCCTTCAAGCAGGCCAAGTAGCAG
1 GGATGATGCCCCTT-AAGCAGGCCAAGTAGCAG
*
63342720 GGATGATGCCCCTATAATCAGG
1 GGATGATGCCCCT-TAAGCAGG
63342742 TTGGGTGTTG
Statistics
Matches: 68, Mismatches: 11, Indels: 12
0.75 0.12 0.13
Matches are distributed among these distances:
29 1 0.01
30 20 0.29
31 2 0.03
32 3 0.04
33 41 0.60
34 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.30, T:0.20
Consensus pattern (32 bp):
GGATGATGCCCCTTAAGCAGGCCAAGTAGCAG
Found at i:63345504 original size:11 final size:11
Alignment explanation
Indices: 63345488--63345524 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
63345478 TAAAAAATAA
63345488 AAAAATATTTT
1 AAAAATATTTT
63345499 AAAAATATTTT
1 AAAAATATTTT
63345510 --AAA-ATTTT
1 AAAAATATTTT
63345518 AAAAATA
1 AAAAATA
63345525 AAAAATAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
8 5 0.22
9 3 0.13
10 3 0.13
11 12 0.52
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:63345504 original size:19 final size:18
Alignment explanation
Indices: 63345480--63345529 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
63345470 TTTAAAAATA
63345480 AAAAATAAAAAAATATTTT
1 AAAAATAAAAAAA-ATTTT
***
63345499 AAAAATATTTTAAAATTTT
1 AAAAATA-AAAAAAATTTT
63345518 AAAAATAAAAAA
1 AAAAATAAAAAA
63345530 TAAAAATATT
Statistics
Matches: 24, Mismatches: 6, Indels: 3
0.73 0.18 0.09
Matches are distributed among these distances:
18 2 0.08
19 19 0.79
20 3 0.12
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AAAAATAAAAAAAATTTT
Found at i:63346432 original size:8 final size:8
Alignment explanation
Indices: 63346414--63346443 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
63346404 TACATTTAAA
63346414 TTTTAACTT
1 TTTTAA-TT
63346423 TTTTAATT
1 TTTTAATT
63346431 TTTTAATT
1 TTTTAATT
63346439 TTTTA
1 TTTTA
63346444 TTCTTTGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 15 0.71
9 6 0.29
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.73
Consensus pattern (8 bp):
TTTTAATT
Found at i:63349432 original size:39 final size:40
Alignment explanation
Indices: 63349371--63349500 Score: 124
Period size: 40 Copynumber: 3.3 Consensus size: 40
63349361 TCATCGTTCA
* * * *
63349371 AATGGCTTCGGGACA-TAGCCCGG-TTATAGTAACTCATAC-
1 AATGCCTTCGGGA-ATTAACCCGGATTATA-AAACTCACACG
* *
63349410 AATGCCTTCGGGAATTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGAATTAACCCGGATTATAAAACTCACACG
* * *
63349450 AATGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACG
1 AATGCCTTCGGGAATTAACCCGG-ATTATAAAACTCACACG
63349490 AATGCCTTCGG
1 AATGCCTTCGG
63349501 ATCTTAGTCC
Statistics
Matches: 78, Mismatches: 9, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
38 1 0.01
39 26 0.33
40 48 0.62
41 3 0.04
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGAATTAACCCGGATTATAAAACTCACACG
Found at i:63349461 original size:40 final size:40
Alignment explanation
Indices: 63349410--63349500 Score: 148
Period size: 40 Copynumber: 2.3 Consensus size: 40
63349400 TAACTCATAC
*
63349410 AATGCCTTCGGGAATTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGAATTAACCCGGA-ATTAATAACTCGCACG
*
63349450 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACG
1 AATGCCTTCGGGAATTAACCCGGAATTAATAACTCGCACG
63349490 AATGCCTTCGG
1 AATGCCTTCGG
63349501 ATCTTAGTCC
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
39 4 0.08
40 44 0.92
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGAATTAACCCGGAATTAATAACTCGCACG
Found at i:63350648 original size:56 final size:57
Alignment explanation
Indices: 63350604--63350723 Score: 190
Period size: 56 Copynumber: 2.1 Consensus size: 57
63350594 CCTTTCTTTA
63350604 TTACCCATACTCCTTATTTTATTCTTCCATTAACAAAACATG-TTTCATGACATGTT
1 TTACCCATACTCCTTATTTTATTCTTCCATTAACAAAACATGTTTTCATGACATGTT
* * *
63350660 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACAAAACATG-TTTCATGACATGTT
1 TTACCCATACTCCTTATTTTATTCTTCCATTAACAAAACATGTTTTCATGACATGTT
*
63350716 TTGCCCAT
1 TTACCCAT
63350724 CATTACTTGT
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 61 1.00
ACGTcount: A:0.26, C:0.23, G:0.07, T:0.43
Consensus pattern (57 bp):
TTACCCATACTCCTTATTTTATTCTTCCATTAACAAAACATGTTTTCATGACATGTT
Found at i:63352994 original size:24 final size:24
Alignment explanation
Indices: 63352953--63353006 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
63352943 GTGGAATTCA
* *
63352953 ATACATATGTAATCGGTGTCATGC
1 ATACATATATAATCGGTGTCATAC
63352977 ATACATATATAGAT-GGTGTCATAC
1 ATACATATATA-ATCGGTGTCATAC
63353001 ATACAT
1 ATACAT
63353007 GCTCTGAGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 25 0.93
25 2 0.07
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (24 bp):
ATACATATATAATCGGTGTCATAC
Found at i:63353120 original size:20 final size:20
Alignment explanation
Indices: 63353095--63353155 Score: 88
Period size: 20 Copynumber: 3.0 Consensus size: 20
63353085 ATTCAATATG
63353095 TACATAGATGGTGTCATACA
1 TACATAGATGGTGTCATACA
*
63353115 TACATAGA-GAGTTTCATACA
1 TACATAGATG-GTGTCATACA
*
63353135 TACATATATGGTGTCATACA
1 TACATAGATGGTGTCATACA
63353155 T
1 T
63353156 GCATTCATAC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
19 1 0.03
20 34 0.94
21 1 0.03
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (20 bp):
TACATAGATGGTGTCATACA
Found at i:63354233 original size:214 final size:213
Alignment explanation
Indices: 63353839--63354262 Score: 523
Period size: 214 Copynumber: 2.0 Consensus size: 213
63353829 TGGATTTAGA
* * * *
63353839 TTTAAGAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACTCAGCACGTTAAGGCATGTTT
1 TTTAAAAGGATATTTGACTATTTGGTCAAACGAGAAATCGAAACTCAGCACGTTAAGGCACGTTT
** * *
63353904 TCTTGATTTTTTAAACGCAAAATATTGCCTTACTGTAAAAGTTTAAAAAGGATATTTGAGTATTT
66 TCTCAATTTTTCAAACGCAAAATATTGCCTTACTGTAAAAGTTTAAAAAGGATATTCGAGTATTT
* * *
63353969 GGTCGTACGGGAAATCGAAATCCAGCACGTTACAGCACGTTCTCTCGATTTTCCAAACGCAAAAT
131 GGTCGAAAGGGAAATCGAAATCCAACACGTTACAGCACGTTCTCTCGATTTTCCAAACGCAAAAT
63354034 ATTACCTTACTTTGAAAT
196 ATTACCTTACTTTGAAAT
*
63354052 TTTAAAAGGATATTTGACTTATTTGGTCAAACGAGAAATCGAAAC-CTAGCACGTTAGGGCACGT
1 TTTAAAAGGATATTTGAC-TATTTGGTCAAACGAGAAATCGAAACTC-AGCACGTTAAGGCACGT
* ** * *
63354116 TTTCTCAATTTTTCAAACGTAAAATATTGCCTTGTTTTGAAAGTTTAAAAAGGATATTCG-GTTA
64 TTTCTCAATTTTTCAAACGCAAAATATTGCCTTACTGTAAAAGTTTAAAAAGGATATTCGAG-TA
* * ** * * * * *
63354180 TTTGGTC-AAAGGAGTAATCGAAA-CTTAACACGTTAGGGCACGTTTTTTCGATTTTCTAAATGT
128 TTTGGTCGAAAGG-GAAATCGAAATC-CAACACGTTACAGCACGTTCTCTCGATTTTCCAAACGC
* *
63354243 GAAATATTACCTTATTTTGA
191 AAAATATTACCTTACTTTGA
63354263 TTTTTTTTTT
Statistics
Matches: 178, Mismatches: 28, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
213 22 0.12
214 156 0.88
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (213 bp):
TTTAAAAGGATATTTGACTATTTGGTCAAACGAGAAATCGAAACTCAGCACGTTAAGGCACGTTT
TCTCAATTTTTCAAACGCAAAATATTGCCTTACTGTAAAAGTTTAAAAAGGATATTCGAGTATTT
GGTCGAAAGGGAAATCGAAATCCAACACGTTACAGCACGTTCTCTCGATTTTCCAAACGCAAAAT
ATTACCTTACTTTGAAAT
Found at i:63354248 original size:107 final size:108
Alignment explanation
Indices: 63353845--63354262 Score: 463
Period size: 107 Copynumber: 3.9 Consensus size: 108
63353835 TAGATTTAAG
* * * * *
63353845 AGGATATTTG-GCTATTTGGTCGAACGAGAAATCGAAACTCAGCACGTTAAGGCATGTTTTCTTG
1 AGGATATTTGAGTTATTTGGTCAAACGAGAAATCGAAACTCAGCACGTTAGGGCACGTTTTCTCG
* * * *
63353909 ATTTTTTAAACGCAAAATATTGCCTTACTGTAAAAGTTTAAAA
66 ATTTTCTAAACGCAAAATATTACCTTACTTTGAAAGTTTAAAA
** * ** *
63353952 AGGATATTTGAG-TATTTGGTCGTACGGGAAATCGAAA-TCCAGCACGTTACAGCACGTTCTCTC
1 AGGATATTTGAGTTATTTGGTCAAACGAGAAATCGAAACT-CAGCACGTTAGGGCACGTTTTCTC
* *
63354015 GATTTTCCAAACGCAAAATATTACCTTACTTTGAAA-TTTTAAA
65 GATTTTCTAAACGCAAAATATTACCTTACTTTGAAAGTTTAAAA
*
63354058 AGGATATTTGACTTATTTGGTCAAACGAGAAATCGAAAC-CTAGCACGTTAGGGCACGTTTTCTC
1 AGGATATTTGAGTTATTTGGTCAAACGAGAAATCGAAACTC-AGCACGTTAGGGCACGTTTTCTC
* * * **
63354122 AATTTT-TCAAACGTAAAATATTGCCTTGTTTTGAAAGTTTAAAA
65 GATTTTCT-AAACGCAAAATATTACCTTACTTTGAAAGTTTAAAA
* * * * * *
63354166 AGGATATTCG-GTTATTTGGTCAAAGGAGTAATCGAAACTTAACACGTTAGGGCACGTTTTTTCG
1 AGGATATTTGAGTTATTTGGTCAAACGAGAAATCGAAACTCAGCACGTTAGGGCACGTTTTCTCG
* ** *
63354230 ATTTTCTAAATGTGAAATATTACCTTATTTTGA
66 ATTTTCTAAACGCAAAATATTACCTTACTTTGA
63354263 TTTTTTTTTT
Statistics
Matches: 263, Mismatches: 39, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
106 19 0.07
107 227 0.86
108 17 0.06
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.34
Consensus pattern (108 bp):
AGGATATTTGAGTTATTTGGTCAAACGAGAAATCGAAACTCAGCACGTTAGGGCACGTTTTCTCG
ATTTTCTAAACGCAAAATATTACCTTACTTTGAAAGTTTAAAA
Found at i:63355870 original size:102 final size:101
Alignment explanation
Indices: 63355686--63356128 Score: 525
Period size: 102 Copynumber: 4.4 Consensus size: 101
63355676 GTGAAAGTGA
* * *
63355686 TGGTCACGTGTGTAGTACTATGTGTAGGCTGCTACGTGTACTTGA-AAGAAAT-GTCACATGCGT
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAAC-TGATAA-AAATGGTCACATGCGT
63355749 AGTACTAAGTGAAGGCTACAATGTGTACCGAGAAGCTT
64 AGTACTAAGTGAAGGCTACAATGTGTACCGAGAAGCTT
* *
63355787 TGGTCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAACAGATAAATAATGGTCACATGCGTA
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACTGATAAA-AATGGTCACATGCGTA
*
63355852 GTACTAAGTGAAGGCTACAATATGTACCGAGAAGCTT
65 GTACTAAGTGAAGGCTACAATGTGTACCGAGAAGCTT
* * * * * *
63355889 TGGTCATGTGTGTAGTACTGTGTGAAGGCTAGTACGTGAATTGATAAATGATGGTCACATGTGTA
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACTGATAAA-AATGGTCACATGCGTA
* *
63355954 GTACTAAGTGAAGGCTACTATGTGTACCGAAAAGCTT
65 GTACTAAGTGAAGGCTACAATGTGTACCGAGAAGCTT
* * * * * * * *
63355991 TAGTCACGTATGTAGTTCTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGATCACGTGTGTA
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACTGATAAAA-ATGGTCACATGCGTA
* * * * * ***
63356055 GTACTATGTGAAGGCTACTACGTGAACC-ATAAAAAT
65 GTACTAAGTGAAGGCTACAATGTGTACCGAGAAGCTT
* *
63356091 TGATCACGTATGTAGTACTATGTGAAGGCTACTACGTG
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTG
63356129 TATCGAATGA
Statistics
Matches: 301, Mismatches: 37, Indels: 9
0.87 0.11 0.03
Matches are distributed among these distances:
100 42 0.14
101 83 0.28
102 176 0.58
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (101 bp):
TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACTGATAAAAATGGTCACATGCGTAG
TACTAAGTGAAGGCTACAATGTGTACCGAGAAGCTT
Found at i:63356062 original size:50 final size:50
Alignment explanation
Indices: 63355686--63356128 Score: 349
Period size: 51 Copynumber: 8.8 Consensus size: 50
63355676 GTGAAAGTGA
* * * * **
63355686 TGGTCACGTGTGTAGTACTATGTGTAGGCTGCTACGTGTA-CTTGAAAGAAA
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGT-AAA-ACT
* * * * * * *
63355737 T-GTCACATGCGTAGTACTAAGTGAAGGCTACAATGTGTACCG-AGAAGCTT
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTA-AAAC-T
* * *
63355787 TGGTCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAACAGATAAATA-A
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAA-ACT
* * * * ** * *
63355838 TGGTCACATGCGTAGTACTAAGTGAAGGCTACAATATGTACCG-AGAAGCTT
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTA-AAAC-T
* * * ** ***
63355889 TGGTCATGTGTGTAGTACTGTGTGAAGGCTAGTACGTGAATTGATAAATGA
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACT
* * * *
63355940 TGGTCACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCG-AAAAGCTT
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAA-C-T
* * *
63355991 TAGTCACGTATGTAGTTCTATGTGAAGGCTACTACGTGAACCGTAAAACT
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACT
* * *
63356041 TGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCATAAAAAT
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACT
* *
63356091 TGATCACGTATGTAGTACTATGTGAAGGCTACTACGTG
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTG
63356129 TATCGAATGA
Statistics
Matches: 304, Mismatches: 73, Indels: 31
0.75 0.18 0.08
Matches are distributed among these distances:
49 5 0.02
50 118 0.39
51 171 0.56
52 8 0.03
53 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (50 bp):
TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACT
Found at i:63357046 original size:5 final size:5
Alignment explanation
Indices: 63357029--63357091 Score: 65
Period size: 5 Copynumber: 12.6 Consensus size: 5
63357019 TGCTTGATAA
* * * *
63357029 AATGG AATAG AATGG AATGG TAT-G ACATGG AATAG TATGG AATGG AATGG
1 AATGG AATGG AATGG AATGG AATGG A-ATGG AATGG AATGG AATGG AATGG
*
63357079 TATGG AATGG AAT
1 AATGG AATGG AAT
63357092 ATATATATAT
Statistics
Matches: 46, Mismatches: 10, Indels: 4
0.77 0.17 0.07
Matches are distributed among these distances:
4 1 0.02
5 43 0.93
6 2 0.04
ACGTcount: A:0.40, C:0.02, G:0.33, T:0.25
Consensus pattern (5 bp):
AATGG
Found at i:63357058 original size:15 final size:15
Alignment explanation
Indices: 63357038--63357091 Score: 83
Period size: 15 Copynumber: 3.6 Consensus size: 15
63357028 AAATGGAATA
63357038 GAATGGAATGGTAT-
1 GAATGGAATGGTATG
*
63357052 GACATGGAATAGTATG
1 GA-ATGGAATGGTATG
63357068 GAATGGAATGGTATG
1 GAATGGAATGGTATG
63357083 GAATGGAAT
1 GAATGGAAT
63357092 ATATATATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.06
15 32 0.89
16 2 0.06
ACGTcount: A:0.37, C:0.02, G:0.35, T:0.26
Consensus pattern (15 bp):
GAATGGAATGGTATG
Found at i:63361622 original size:30 final size:30
Alignment explanation
Indices: 63361581--63361680 Score: 155
Period size: 30 Copynumber: 3.3 Consensus size: 30
63361571 GTTTGAGGGG
*
63361581 GGATCCGCGCGTCGACCCGGCCCGGTTCCA
1 GGATCAGCGCGTCGACCCGGCCCGGTTCCA
* *
63361611 GGATCATCGCGTCGACCCGGCCTGGTTCCA
1 GGATCAGCGCGTCGACCCGGCCCGGTTCCA
*
63361641 GGATCCGCGCGTCGACCCGGCCCGGTTCCA
1 GGATCAGCGCGTCGACCCGGCCCGGTTCCA
*
63361671 GGATCCGCGC
1 GGATCAGCGC
63361681 ATATTCCTTT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.11, C:0.41, G:0.33, T:0.15
Consensus pattern (30 bp):
GGATCAGCGCGTCGACCCGGCCCGGTTCCA
Found at i:63361996 original size:3 final size:3
Alignment explanation
Indices: 63361988--63362021 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
63361978 TATTTTCTCC
*
63361988 TTA TTA TTA TTA ATA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
63362022 GTACATACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:63362390 original size:24 final size:25
Alignment explanation
Indices: 63362345--63362395 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 25
63362335 ATATTCATTC
** *
63362345 ATTTTATATATATATGTTTATGTAT
1 ATTTTATATATATATGCATATGCAT
*
63362370 ATTTTTTA-ATATATGCATATGCAT
1 ATTTTATATATATATGCATATGCAT
63362394 AT
1 AT
63362396 GCATATTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.33, C:0.04, G:0.08, T:0.55
Consensus pattern (25 bp):
ATTTTATATATATATGCATATGCAT
Found at i:63363851 original size:16 final size:17
Alignment explanation
Indices: 63363821--63363852 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
63363811 AGACATGCAA
63363821 AGTAGCAACAGAGAAAC
1 AGTAGCAACAGAGAAAC
63363838 AGTAGCAA-AGAGAAA
1 AGTAGCAACAGAGAAA
63363853 TAATAAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.56, C:0.12, G:0.25, T:0.06
Consensus pattern (17 bp):
AGTAGCAACAGAGAAAC
Found at i:63365684 original size:73 final size:71
Alignment explanation
Indices: 63365563--63365712 Score: 246
Period size: 73 Copynumber: 2.1 Consensus size: 71
63365553 AAAGAGAAAT
63365563 AATAAACAATGTAATATTGGCAGGCCATGGATTGCAACGTTTTCAAAAAAAAGGGAGAAATACAC
1 AATAAACAATGTAATATTGGCAGGCCATGGATTGCAACGTTTTC--AAAAAAGGGAGAAATACAC
63365628 AAATTTTG
64 AAATTTTG
* * *
63365636 AATAAACAATGTAATATTGGTAGGCCATGGATTGTAACGTTTTTAAAAAAGGGAGAAATACACAA
1 AATAAACAATGTAATATTGGCAGGCCATGGATTGCAACGTTTTCAAAAAAGGGAGAAATACACAA
*
63365701 ATTTTT
66 ATTTTG
63365707 AATAAA
1 AATAAA
63365713 AAAAAGAACA
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
71 32 0.44
73 41 0.56
ACGTcount: A:0.45, C:0.10, G:0.18, T:0.27
Consensus pattern (71 bp):
AATAAACAATGTAATATTGGCAGGCCATGGATTGCAACGTTTTCAAAAAAGGGAGAAATACACAA
ATTTTG
Found at i:63366406 original size:16 final size:17
Alignment explanation
Indices: 63366379--63366412 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
63366369 CACACAAAGC
63366379 AGCAACAGAGAAACAAT
1 AGCAACAGAGAAACAAT
*
63366396 AGCAA-AGAGAAATAAT
1 AGCAACAGAGAAACAAT
63366412 A
1 A
63366413 AACAATGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.62, C:0.12, G:0.18, T:0.09
Consensus pattern (17 bp):
AGCAACAGAGAAACAAT
Found at i:63368952 original size:16 final size:17
Alignment explanation
Indices: 63368924--63368955 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
63368914 ACATGCAAAG
63368924 TAGCAACAGAGAAACAT
1 TAGCAACAGAGAAACAT
63368941 TAGCAA-AGAGAAACA
1 TAGCAACAGAGAAACA
63368956 ATAAACAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.56, C:0.16, G:0.19, T:0.09
Consensus pattern (17 bp):
TAGCAACAGAGAAACAT
Found at i:63370896 original size:33 final size:34
Alignment explanation
Indices: 63370839--63370909 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 34
63370829 TTTCTTTTTT
* *
63370839 TTTCTTTTTTTTATACCGTTTATACATACAAATA
1 TTTCTTTTTTTAATACCGTGTATACATACAAATA
* * *
63370873 TTTC-TTTTTTAATACTGTGTATACATATATATA
1 TTTCTTTTTTTAATACCGTGTATACATACAAATA
63370906 TTTC
1 TTTC
63370910 AAAGGTGTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 28 0.88
34 4 0.12
ACGTcount: A:0.28, C:0.13, G:0.04, T:0.55
Consensus pattern (34 bp):
TTTCTTTTTTTAATACCGTGTATACATACAAATA
Found at i:63371445 original size:855 final size:849
Alignment explanation
Indices: 63363731--63373817 Score: 10448
Period size: 855 Copynumber: 11.9 Consensus size: 849
63363721 AATAGAAACC
* * * *
63363731 CTAGCCCCACCACCTCTTCGCGCTGTACCCTCCACGTGCCGTCTGATACCTTTCTGCCATCGTTA
1 CTAGCCGCACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTTA
* *
63363796 CCTGCAAGGAAGAACAGACATGCAAAGTAGCAACAGAGAAACAGTAGCAAAGAGAAATAATAAAC
66 CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGAGAAATAATAAAC
*
63363861 AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGGGGGAAATACACAAATTTTG
131 AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGGGAGAAATACACAAATTTTG
* *
63363926 AATAAACAAAAAAGAACAGATTCAAAGCATACAAACAAAAAATATAACAACCAAGCAAA-AAAAA
196 AATAAACAAAAAAGAACAGATTCAAAGCATACAAACGAAAAATATAGCAACCAAGCAAAGAAAAA
* * * *
63363990 GTGAGAAACGTGCAAAGGTCCTCTTCATTTTTATTTTCTTTGTTTTT-TTTTTTTGAAACTGTTT
261 GTGAGAAACGTGCAATGGTCCTCTTCATTTTTATTTTCTTTTTTTTTCTTTTTTTTAAACCGTTT
*
63364054 ATACATACAAATATTTCTTTTTTAATACTGTGTATACTTATATATGTATTTCAAAGGTGTATGAA
326 ATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATA-GTATTTCAAAGGTGTATGAA
* * * * *
63364119 AAGAGAAACTTACCCCTTTTTCTTTGATTTCTCCGAAAAAAGAGACTTTTGGCCTTCCGGTCG--
390 AAGAGAAACTTA-CCCTTTCTCTTTGATTTCACCAAAAAAAGGGACTTTTGGCCTTCCAGTCGCT
* * * * * * * * * * *
63364182 -CCGTCGACAGTAGCGCTGTCGCCGGATACCTGTGGCCGACGTGGCAGCAGTTTGTCGGATTCTG
454 ACCGACGACAGCA-C-C-GTCGCCAGATATCGGTGGTCGACGCGACAGCAGTTCGCCGAATTCTG
* * *
63364246 GAAAAGGGGAAAGAGTTTTCGAGAGAAAATTTTGGTTTTTTTTGGAGAAGTGTAGAAATGA-GGC
516 GAAAAGGGGAAAGAGTTTTGGAGAGAAAATTTTGG-TTTTTTTGGAGAAGTGCAGAAAT-ATAGC
* * *
63364310 ATTTTTATTTAAAAAAATTAACTTAAATAGGCCCTACGAAACGACGTCGTTTTGGGCCAGTGCTC
579 ---TAT-TTTAAAAAAATTGACTTAAATAGGCCCTACGAAACGGCGTCGTTTTGGGCCAGTGCTC
* ** * * *
63364375 CAGACGACAAAACGGCGTCGTTTTGTCCCTTGACCCATGCACACGACCCAACCTACCAGGGGATC
640 CAGACGACAAAAC-GCGTCGTTTAG-CCCTTGACCCGCGCGCGCGACCCAACCTGCCAGGGGATC
** * * *
63364440 CTCGTGTTTTCAATTTTTGGGTTATTTATGCAGCATGTCCTTTCGATTTTTCCACATATTTTAAT
703 AGCGCGTTTTCAACTTTTGGGTTATTTATGCAGCATGTCCTTCCGATTTTTCCACATATTTTAAT
63364505 TAGATCC---------TTTTTGTTTCTTTTATTTCGGCCTGATAATTTTGCTTTT-AGCAAAATA
768 TAGATCCTTTTTTTTATTTTTGTTTCTTTTATTTCGGCCTGATAATTTTG-TTTTCAGCAAAATA
*
63364560 GAAACCTTAGCCCCACCA
832 GAAACCCTAGCCCCACCA
* * * * *
63364578 CTAGCCCCACCACCTCTTCGCGCCATACCCTCCACGTGCCGTCTAACACCTTTCTACCATCGTTA
1 CTAGCCGCACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTTA
** ** *
63364643 CCTGCAAGGAAGAACAGACACGCAAAGCAATAGTAGAGAAATAGTAGCAAAGAGAAATAATAAAC
66 CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGAGAAATAATAAAC
* * * * *
63364708 AATGTAATATTAGCAAGCCATGGATTGTAACGTTTTCAAGAACAGGGAGAAAT-----AGTTTTG
131 AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGGGAGAAATACACAAATTTTG
*
63364768 AATAAACAAAAAAGCAACAGATTCAAAGCATACAAACGAAAAATATAGAAACCAAGCAAAGAAAA
196 AATAAACAAAAAAG-AACAGATTCAAAGCATACAAACGAAAAATATAGCAACCAAGCAAAGAAAA
* * * *
63364833 AGTGAGAAACATGCAAAGGTCTTCTTCATTTTTATGTTCTTTGTTTTTTCTTATTTTTTGAAACC
260 AGTGAGAAACGTGCAATGGTCCTCTTCATTTTTATTTTCTTT-TTTTTTCTT-TTTTTT-AAACC
* *
63364898 ATTTATACATACAAATATTTCTTTTTTAATACTGTCTATACATATATATGTATTTCAAAGGTGTA
322 GTTTATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATA-GTATTTCAAAGGTGTA
* * * ***
63364963 TGAAAAGAGAAACTTACCCCTTCCTCTTTGATTTCACCGAAAAAAGGGACATTTGGCCTTTTGGT
386 TGAAAAGAGAAACTTA-CCCTTTCTCTTTGATTTCACCAAAAAAAGGGACTTTTGGCCTTCCAGT
* *** * ** * ** * * *
63365028 TGCCGTCGACAACAGTGCCATTACCAGATATCGGTGGCCGACG-AAGCAGCGGTTCGCC-AGATT
450 CGCTACCGACGACAGCACCGTCGCCAGATATCGGTGGTCGACGCGA-CAGCAGTTCGCCGA-ATT
* * * *
63365091 CTGGAAAAGCAGTAAA-AGTTTTGGAGAGAAAATTTTGGTTTCTTTATTGGAGAAATGCATAAAT
513 CTGGAAAAG-GGGAAAGAGTTTTGGAGAGAAAATTTTGG-TT-TTT-TTGGAGAAGTGCAGAAAT
* * * *
63365155 GA-GGCTATTTAAAAAAAAACAATTTGACTTAAATAGGCCCTACGAAACGACGTCGTTTTGAGCC
574 -ATAGCTATTT---TAAAAA-AA-TTGACTTAAATAGGCCCTACGAAACGGCGTCGTTTTGGGCC
* * * * * * * * *
63365219 AGTGCTCCAGACCAAAAAAGGCATCGTTTAGCCCCTTGACCCGTGTGCACGACCCAACTTGTCAG
633 AGTGCTCCAGACGACAAAACGCGTCGTTTAG-CCCTTGACCCGCGCGCGCGACCCAACCTGCCAG
* * *
63365284 GGGATCCGCGCGTTTTCATCTTTTGGGTTATTTATGCAGCATGTCCTTCCAATTTTTCCACATAT
697 GGGATCAGCGCGTTTTCAACTTTTGGGTTATTTATGCAGCATGTCCTTCCGATTTTTCCACATAT
*
63365349 TTTAATTAGATACTTTTTTTGATTATTTTTGTTTCTTTTATCTT-GGCCTGATAATTTTGTTTTC
762 TTTAATTAGAT-CCTTTTTT--TTATTTTTGTTTCTTTTAT-TTCGGCCTGATAATTTTGTTTTC
*
63365413 AGCAAAATA-AAAACCTGAGCCCCACCA
823 AGCAAAATAGAAACCCT-AGCCCCACCA
* * * *
63365440 CTAGCCGCACCACCTCTTCGCGCCGTACCATCCACGTGCCGTCTGACACCTTTCTACCATCATTA
1 CTAGCCGCACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTTA
*
63365505 CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAAAAACAGTAGCAAAGAGAAATAATAAAC
66 CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGAGAAATAATAAAC
*
63365570 AATGTAATATTGGCAGGCCATGGATTGCAACGTTTTCAAAAAAAAGGGAGAAATACACAAATTTT
131 AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTC-AAAAAAAGGGAGAAATACACAAATTTT
** * * ** * * * *
63365635 GAATAAACAATGTAATATTGGTAGGCCATGGATTGTAACGTTTTTAAAAAAGGGAGAAATACA-C
195 GAATAAACAA---AA-A-----AGAACA--GATT-CAAAG--CAT-ACAAA-CGAAAAATATAGC
**** * ** ** * * * ** *** ** * **** ****
63365699 AA--ATTTTTAATAAAAA-AAAGAACATATTCAAAGTATACAAACAAAAAATATAGCAAACAAGC
244 AACCA-AGCAAAGAAAAAGTGAGAA-ACGTGCAATG-GT-C-CTCTTCATTTTTA-TTTTCTTTT
********** *** ** * * * ** *
63365761 AAAGAAAAAGTGAGAAA-CGTGCAAAGGTCCTCTTCATTTTATTTTCTTTTTTAATATTGTGTAT
303 TTTTTCTTTTTTTTAAACCGT--TTA--TAC-ATACA-AATA-TTTCTTTTTTAATACTGTGTAT
* * *
63365825 ACGTATATATGTATTTCAAAGGTGTATAAAAAGAGAAACTTACCGCTTCCTCTTTGATTTCACCA
361 ACATATATA-GTATTTCAAAGGTGTATGAAAAGAGAAACTTACC-CTTTCTCTTTGATTTCACC-
* ** * *** ** * * * *
63365890 AAAAAAAGGGACTTTTGACCTTCTGGTCACCGTCGACGACAGCGTCGTCGCCGGATACCAGTGGC
423 AAAAAAAGGGACTTTTGGCCTTCCAGTCGCTACCGACGACAGCACCGTCGCCAGATATCGGTGGT
* * *
63365955 CGACGCTG-CAGCAGTT-------TGCT------------AGA-TTCT-GA-A-AAAAATTTGGT
488 CGACGC-GACAGCAGTTCGCCGAATTCTGGAAAAGGGGAAAGAGTTTTGGAGAGAAAATTTTGGT
* * * **** *
63365996 TTTTTTGGAGAAGTACAGAAATGA-GGTTATTTTAAATTTTTTTGACTTAAATAGGCTCTACGAA
552 TTTTTTGGAGAAGTGCAGAAAT-ATAGCTATTTTAAA-AAAATTGACTTAAATAGGCCCTACGAA
* * *
63366060 ATGGCGTCGTTTTGGGCCAGTGCTCCAGACAACAAAACGGCGTCGTTTAGGCCCTTTA-CC-CGC
615 ACGGCGTCGTTTTGGGCCAGTGCTCCAGACGACAAAAC-GCGTCGTTTA-GCCCTTGACCCGCGC
* * * * ** *
63366123 GCGCGACCTAACTTGCTAGGGGATCCGCGCGTTTTCAACTTTTTCGTTATTTCTGCAGCATGTCC
678 GCGCGACCCAACCTGCCAGGGGATCAGCGCGTTTTCAACTTTTGGGTTATTTATGCAGCATGTCC
*
63366188 TTCTGATTTTTCCACATATTTTAATTAGAT-C--------ATTTTTGTTTCTTTTATTTCGGCCT
743 TTCCGATTTTTCCACATATTTTAATTAGATCCTTTTTTTTATTTTTGTTTCTTTTATTTCGGCCT
* * *
63366244 GACAATTTTGTTTTCAGCAACATAGAAACCCAAGCCCCACCA
808 GATAATTTTGTTTTCAGCAAAATAGAAACCCTAGCCCCACCA
* * * * * *
63366286 TTAGCCGCACCACATCTTCGCGTCGTATCCTCCACGTGCCGTCTAACACCCTTCTGCCGTCGTTA
1 CTAGCCGCACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTTA
* * *
63366351 CCTGCAAGGAGGAACAGACACACAAAGCAGCAACAGAGAAACAATAGCAAAGAGAAATAATAAAC
66 CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGAGAAATAATAAAC
* *
63366416 AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGTGAGAATTACACAAATTTTG
131 AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGGGAGAAATACACAAATTTTG
* *
63366481 AATAAACAAAAAAGAATAGATTCAAAGTATACAAACG-AAAA-ATAGCAACCAAGCAAAG-AAAA
196 AATAAACAAAAAAGAACAGATTCAAAGCATACAAACGAAAAATATAGCAACCAAGCAAAGAAAAA
* * * *
63366543 GCGAGAAACGTGCAATGGTCCTCTTCA-TTTTATTTTC---TTTGTT-TTTTATTGAAACCGTTT
261 GTGAGAAACGTGCAATGGTCCTCTTCATTTTTATTTTCTTTTTTTTTCTTTTTTTTAAACCGTTT
* **
63366603 ATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATATGTACTTCAAAGGAATATGAA
326 ATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATA-GTATTTCAAAGGTGTATGAA
* * *
63366668 AAGAGAAACTTACCCCTTTCTCTTTGATTTCACCAAAAAAAGAGACTTTTGGCCTTCTAGTCAC-
390 AAGAGAAACTTA-CCCTTTCTCTTTGATTTCACCAAAAAAAGGGACTTTTGGCCTTCCAGTCGCT
* * * * * * * * * * *
63366732 CCTCGACGACAGCGCCGTCGCCGGAAACCGGTGGCCAACGCGGCAGCAGTTCCCCGGATTCTGAA
454 AC-CGACGACAGCACCGTCGCCAGATATCGGTGGTCGACGCGACAGCAGTTCGCCGAATTCTGGA
* *
63366797 AAAGTGGAAAGAGTTTTGGAGAGAAAATTTTGTTTTTTTTTGGAGAAGTGCAGAAATGA-AGCTA
518 AAAGGGGAAAGAGTTTTGGAGAGAAAATTTTG-GTTTTTTTGGAGAAGTGCAGAAAT-ATAGCTA
* * *
63366861 TTTTTTTAAAAAAATTGACTTAAATAGGCCTTATGAAACGGCGTCGTTTTGGGCCAGTGCTCTAG
581 ---TTTTAAAAAAATTGACTTAAATAGGCCCTACGAAACGGCGTCGTTTTGGGCCAGTGCTCCAG
* * ** ** * *
63366926 ACGTCAAAACGACGTCGTTTAGCCCTTTTACATGTTCGCGCGACCCAACCTGCTAGGGGATCTGC
643 ACGACAAAACG-CGTCGTTTAGCCC-TTGACCCGCGCGCGCGACCCAACCTGCCAGGGGATCAGC
* * *
63366991 GCGTTTTCAACTTTTGGGTTATTTATGCAGCATGTCCTCCCAATTTTTCTACATATTTTAATTAG
706 GCGTTTTCAACTTTTGGGTTATTTATGCAGCATGTCCTTCCGATTTTTCCACATATTTTAATTAG
* * * * *
63367056 A---------TAATTTTTGTTTATTTTATTTCGGCCTGATAGTTTTTTTTTTCAGCAAGATAGAA
771 ATCCTTTTTTTTATTTTTGTTTCTTTTATTTCGGCCTGATA-ATTTTGTTTTCAGCAAAATAGAA
* * **
63367112 ACCCTAGACCAATAA
835 ACCCTAGCCCCACCA
* * * * *
63367127 CTAGCTGCACCACCTCTTCGCG-CGATACCCTTCACGTGCCGTCTAACATCTTTCTGCCATCGTT
1 CTAGCCGCACCACCTCTTCGCGCCG-TACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTT
* **
63367191 GCCTGCAAGGAAGAACAGACACGCAAAGCAAAAACAGAGAAACAGTAGCAAAGAGAAATAATAAA
65 ACCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGAGAAATAATAAA
* * *
63367256 CAATGTAATATTGGCAGGCCAGGGATTGTTACGTTTTCAAAAAAAGGGAGAAAAACACAAATTTT
130 CAATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGGGAGAAATACACAAATTTT
* * * *
63367321 GAATAAACAAAAAAGGACAGATTCAAAGCACAGAAACGAAAAATATAGCAACCAAACAAAGAAAA
195 GAATAAACAAAAAAGAACAGATTCAAAGCATACAAACGAAAAATATAGCAACCAAGCAAAGAAAA
* * * *
63367386 ATTAAGAAATGTGCAAAT-GTCCTCTTCATTTTTA---------TTTTTATTTTTTTTAAACCGT
260 AGTGAGAAACGTGC-AATGGTCCTCTTCATTTTTATTTTCTTTTTTTTTCTTTTTTTTAAACCGT
* * *
63367441 TTATACATACAAATATTTCTTTTTTAATATTGTGTGTGCATATATATGTATTTCAAAGGTGTATG
324 TTATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATA-GTATTTCAAAGGTGTATG
* * * * *
63367506 AAAAGAGAAACTTACCCCCTTCTCTTTGATTTCACTGAAAAAAA-TGACTTTTGGCCTTTCAATC
388 AAAAGAGAAACTTA-CCCTTTCTCTTTGATTTCAC-CAAAAAAAGGGACTTTTGGCCTTCCAGTC
* ** * * ** * *** * * * *
63367570 ACTGTCGACAACAACGTCATCGCC-GAATATTTCTGATCGATGCGGCAGC-GATTCGCCGGATTC
451 GCTACCGACGACAGCACCGTCGCCAG-ATATCGGTGGTCGACGCGACAGCAG-TTCGCCGAATTC
* * * *
63367633 TGGAAAAAGGGAAAGAGTTTTGGAGAGAAAATTTTTGTTTTTTTTGGAGAAGTGTAGAAATGA-G
514 TGGAAAAGGGGAAAGAGTTTTGGAGAGAAAA-TTTTGGTTTTTTTGGAGAAGTGCAGAAAT-ATA
*** * *
63367697 GCTATTTTTTTTAAAAAAATTGACTTAAATAGGCCCTACGAAATAACGTCGTTTTTGGCTAGTGC
577 GCTA----TTTTAAAAAAATTGACTTAAATAGGCCCTACGAAACGGCGTCGTTTTGGGCCAGTGC
* * * * * *
63367762 TCCATATGAAAAAACGACATCGTTTAGCCCCTTGACCTGCGCGTGCGACCCAACCTGCCAGGGGA
638 TCCAGACGACAAAACG-CGTCGTTTAG-CCCTTGACCCGCGCGCGCGACCCAACCTGCCAGGGGA
* *
63367827 TCCA-CGCGTTTTCAACTTTTGGGTTATTTAAGCAGCATGTCCTTCCGATTTTT-CACATAGTTT
701 T-CAGCGCGTTTTCAACTTTTGGGTTATTTATGCAGCATGTCCTTCCGATTTTTCCACATATTTT
*
63367890 AATTAGATCCTCTTTGTTTATTTTTGTTTCTTTTATTTCGGCCTGATAA-TTT-TTTTCAGCAAA
765 AATTAGATCCT-TTTTTTTATTTTTGTTTCTTTTATTTCGGCCTGATAATTTTGTTTTCAGCAAA
* *
63367953 ATAGAAAGCCTAACCCCACCA
829 ATAGAAACCCTAGCCCCACCA
* * *
63367974 CTAGCCGCACCACCTCTTCGCGCTGTACCCTCCACGTGCTGTCTGACACCTTTCTGCCATCGTTA
1 CTAGCCGCACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTTA
* * * * * *
63368039 CCTACAAGGAAGAACAGATACGCAAAGCAGTAAGAGAGAAACAATAGAAAAG-GAAATAATAAAC
66 CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGAGAAATAATAAAC
* * *
63368103 AATGTAATATTGGCAGGCCATAGATTGTAACATTTTCAAAAAATGGGAGAAATACACAAATTTTG
131 AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGGGAGAAATACACAAATTTTG
* * *
63368168 AATAAATAAAAAAGAACAGATTCAAAGCAAACAAACGAAAAATATTGCAACCAAGCAAAGAAAAA
196 AATAAACAAAAAAGAACAGATTCAAAGCATACAAACGAAAAATATAGCAACCAAGCAAAGAAAAA
* * * *
63368233 GTGAGAAAGGTGTAAAGGTCCTCTTAATTTTTATTTTCTATTTTCTTTGTTTTTTCTTTTTTTTT
261 GTGAGAAACGTGCAATGGTCCTC------TTCATTTT-TATTTTCTTT-TTTTTTC--TTTTTTT
*
63368298 TGAAACCGTTTATACAAACAAATATTTCTTTTTTAATACTGTGTATACATATATATGTATTTCAA
316 T-AAACCGTTTATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATA-GTATTTCAA
* *
63368363 AGGTGTATGAAAAGAGAAACTTACCCTTTTCTCTTTGATTTCACCCAAAAAAAGGGAATTTTGGG
379 AGGTGTATGAAAAGAGAAACTTACCC-TTTCTCTTTGATTTCA-CCAAAAAAAGGGACTTTTGGC
* * ** * * ** * * *
63368428 CTTCGAGTCACTGTCGATGGCAGCACCGTCGCTGGATATCGGTGGTCGACGTGGCAGCGGTTCGC
442 CTTCCAGTCGCTACCGACGACAGCACCGTCGCCAGATATCGGTGGTCGACGCGACAGCAGTTCGC
* *
63368493 CGAATTTTGGAAAATGGGAAAGAGTTTTGGATG-GAAAATTTTGGTTTTTTTGGAGAAGTGCAGA
507 CGAATTCTGGAAAAGGGGAAAGAGTTTTGGA-GAGAAAATTTTGGTTTTTTTGGAGAAGTGCAGA
* * *
63368557 AAT-TAGGCTATTTTTTAAAAAAAATTAACTTAAATAGGCCCTACGAAATGGTGTCGTTTTGGGC
571 AATATA-GCTA--TTTT-AAAAAAATTGACTTAAATAGGCCCTACGAAACGGCGTCGTTTTGGGC
* * * * * * * * *
63368621 CAGTGCTCCAGAGGACAAAATGGCGTTGTTTAGCCTCTTGACCCGTGTGTGCGATCCAGCTTGCC
632 CAGTGCTCCAGACGACAAAA-CGCGTCGTTTAGCC-CTTGACCCGCGCGCGCGACCCAACCTGCC
* * ** *
63368686 AGCGGATCCGCGCGTTTTCAACTTTTGGGTTATAAATGCAGCATGTCCTTCCGATTTTTCCACTT
695 AGGGGATCAGCGCGTTTTCAACTTTTGGGTTATTTATGCAGCATGTCCTTCCGATTTTTCCACAT
* *
63368751 ATTTTTATTAGATCC---------TTTTTGTTTATTTTATTTCGGCCTGATAATTTTGTTTTCAG
760 ATTTTAATTAGATCCTTTTTTTTATTTTTGTTTCTTTTATTTCGGCCTGATAATTTTGTTTTCAG
*
63368807 CAAAATAGAAACCCTAGCCTCACCA
825 CAAAATAGAAACCCTAGCCCCACCA
* *
63368832 CTAGCCGCACCACCTCTTCGCGCCGTACCCTCAACGTGCCGTCTGACACCTTTCTGCCATCGTTA
1 CTAGCCGCACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTTA
* * * *
63368897 CCTGCAAGGAAGAACAGACATGCAAAGTAGCAACAGAGAAACATTAGCAAAGAGAAACAATAAAC
66 CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGAGAAATAATAAAC
*** *
63368962 AATGTAATATTGGCAGGCTGCGGATTGTAACGTTTTCAAAAAAAGAGAGAAATACACAAATTTTG
131 AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGGGAGAAATACACAAATTTTG
* * *
63369027 AATAAACAAAAAAAAACAAATTCAAAGCATACAAATGAAAAATATAGCAACCAAGCAAAGAAAAA
196 AATAAACAAAAAAGAACAGATTCAAAGCATACAAACGAAAAATATAGCAACCAAGCAAAGAAAAA
* * * * *
63369092 GTGAGAAACGTGC-AT--T--T-TT-A-TTTT-CTTTGTTTTTTTCTCTTTTTTTGAAACCATTT
261 GTGAGAAACGTGCAATGGTCCTCTTCATTTTTATTTTCTTTTTTTTTCTTTTTTTTAAACCGTTT
* * * *
63369148 ATAGATACATATATTTCTTTTTTAATACTGTATATACATATATATGTATTTCAAAGTTGTATGAA
326 ATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATA-GTATTTCAAAGGTGTATGAA
* * *** * * * *
63369213 AAGAGAAATTTACCCCATTCTCTTTGATTTCAATGAAAAAAGAGACTCTTGGCCTTCCGGTCGCC
390 AAGAGAAACTTA-CCCTTTCTCTTTGATTTCACCAAAAAAAGGGACTTTTGGCCTTCCAGTCGCT
** * ** * * * * * * *
63369278 ACCGACGGTAGCACCGTCGCAAGATATCACTAGCCGATGCGACAACGGTTTGCCAAATTCTGGAA
454 ACCGACGACAGCACCGTCGCCAGATATCGGTGGTCGACGCGACAGCAGTTCGCCGAATTCTGGAA
* *
63369343 AAGGGGAAAGAGTTTTGGAGATAAAATTTTGGTTTTTTTTGGAGAAGTGCGGAAATATAGCTATT
519 AAGGGGAAAGAGTTTTGGAGAGAAAATTTTGG-TTTTTTTGGAGAAGTGCAGAAATATAGCTATT
* * * *** *
63369408 TTAAGAAAAATTAACTTAAATAGG-CGTA-GACAC-GCTGTCGTTTTATACCAATGCTCCAGACG
583 TTAA-AAAAATTGACTTAAATAGGCCCTACGAAACGGC-GTCGTTTTGGGCCAGTGCTCCAGACG
* * * * *
63369470 ACAAAACCGTGTCGTTTAGCCCATTGACCCGAGCGTGCGACCCAACCTGCCATGGGATCAGCGCA
646 ACAAAA-CGCGTCGTTTAGCCC-TTGACCCGCGCGCGCGACCCAACCTGCCAGGGGATCAGCGCG
* * ** *
63369535 TTTTTAACTTTTGGGTTATTTATGGAGCATGTCCTTCCGCCTTTTCCAGATATTTTAATTAGATC
709 TTTTCAACTTTTGGGTTATTTATGCAGCATGTCCTTCCGATTTTTCCACATATTTTAATTAGATC
*
63369600 C-TTTTTTTATTTTTGTTTCTTTTATTTCGGCCTGATAATTTTGTTTTCAGCAAAATAAAAACCC
774 CTTTTTTTTATTTTTGTTTCTTTTATTTCGGCCTGATAATTTTGTTTTCAGCAAAATAGAAACCC
63369664 TAG--CC-CCA
839 TAGCCCCACCA
* * *
63369672 C---CCGAACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTACCGTCATTA
1 CTAGCCGCACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTTA
** * *
63369734 CCTTTAAGGAAGAACAGACATGCAAAGCAGCAACAGAGAAACAGTAGCAAAGGGAAATAATAAAC
66 CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGAGAAATAATAAAC
* * *
63369799 AATGTAATATTGGCTGGCCATGGATTGCAACATTTTCAAAAAAAAGGGAGAAATACACAAATTTT
131 AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTC-AAAAAAAGGGAGAAATACACAAATTTT
* *
63369864 GAATAAACAAAAAAGAACAGATTCAAAGCATACAAACAAAAAATATATCAACCAAGCAAAGAAAA
195 GAATAAACAAAAAAGAACAGATTCAAAGCATACAAACGAAAAATATAGCAACCAAGCAAAGAAAA
* *
63369929 AGTGAGAAACGTGCAAAGGTCCTCTTCATTTTTATTTTCTTTGTTTTCTCTTTTTTTTTTTGAAA
260 AGTGAGAAACGTGCAATGGTCCTCTTCATTTTTATTTTC-TT-TTTT-T-TTCTTTTTTTT-AAA
* *
63369994 CCATTTATACATACAAATATTTCTTTTTTCATACTGTGTATACATATATATATGTATTTCAAAGG
320 CCGTTTATACATACAAATATTTCTTTTTTAATACTGTGTATAC--ATATATA-GTATTTCAAAGG
*
63370059 TGTATGAAAAGAGAAACTTACCCTTTTCTCTTTGATTTCACC-GAAAAAGGGACTTTTGGCCTTC
382 TGTATGAAAAGAGAAACTTACCC-TTTCTCTTTGATTTCACCAAAAAAAGGGACTTTTGGCCTTC
* ** * ** * * * *
63370123 CAGACGCTAATGACGGCAGTGCCATCGCCAGATACCGGT-GTCCAACGCGACATC-GATTCGCCG
446 CAGTCGCTACCGACGACAGCACCGTCGCCAGATATCGGTGGT-CGACGCGACAGCAG-TTCGCCG
* * *
63370186 GATTCTGGAAAAAGGGAAAGAGTTTTGGAGAGAAAATTTTGGTGTTTTTTGGAAAAGTGCA-AAA
509 AATTCTGGAAAAGGGGAAAGAGTTTTGGAGAGAAAATTTTGGT-TTTTTTGGAGAAGTGCAGAAA
**** * * **
63370250 -ATGAGGCTATTTTAAATTTTTTTTTAACTTAAATAGGCCCTATGAAACAACGTCGTTTTGGGCC
573 TAT-A-GCTATTTTAAA---AAAATTGACTTAAATAGGCCCTACGAAACGGCGTCGTTTTGGGCC
* * * *
63370314 AGTGCTCCAGACAACAAAATGGCGTCGTTTAGACCCTTGACCCGCGCTCGCGACCCAACCTACCA
633 AGTGCTCCAGACGACAAAA-CGCGTCGTTTAG-CCCTTGACCCGCGCGCGCGACCCAACCTGCCA
* * * *
63370379 GGGGCTTA-CACGTTTTCAACTTTTGGGTCATTTATGCAGCATGTCCTTCCGATTTTTCCACATA
696 GGGGATCAGCGCGTTTTCAACTTTTGGGTTATTTATGCAGCATGTCCTTCCGATTTTTCCACATA
* *
63370443 TTTTAATTAGATCCTTTCTGTTTATTTTTGTTTCTTTTTATCTCGGCCTGATAATTTTGTTTTCA
761 TTTTAATTAGATCCTTT-TTTTTATTTTTGTTTC-TTTTATTTCGGCCTGATAATTTTGTTTTCA
* *
63370508 GCAACATAGAATCCCTAGCCCCACCA
824 GCAAAATAGAAACCCTAGCCCCACCA
* * * *
63370534 CTAGTCGCACCACCTCTTCGCACCGTACCCTCCACGTGCTGCCTGACACCTTTCTGCCGTCGTTA
1 CTAGCCGCACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTTA
* * * * * * *
63370599 CCTGTAAGGATGAATAGACACACAAAGCAACAACATG-GAAACATTATCAAAGAGAAATAATAAA
66 CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACA-GAGAAACAGTAGCAAAGAGAAATAAT--A
* * * * * *
63370663 AAAAATGTAATATTGGCA-GCCATGGAATGTAACATTTTCTAAAAAAGGGAGAACTACAAAAATT
128 AACAATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGGGAGAAATACACAAATT
* *
63370727 TTGAATAAACAAAAAA-AATTACATTCAAAGCATACAAA-GAAAAAATATAGCAACCAAGCAAAG
193 TTGAATAAACAAAAAAGAA-CAGATTCAAAGCATACAAACG-AAAAATATAGCAACCAAGCAAAG
* *
63370790 AAAAAGTGAGAAACGTGCAATGGTCCTCTTCATTTTTAGTTTCTTTTTTTTTCTTTTTTTTATAC
256 AAAAAGTGAGAAACGTGCAATGGTCCTCTTCATTTTTATTTTCTTTTTTTTTCTTTTTTTTAAAC
63370855 CGTTTATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATA-TATTTCAAAGGTGTA
321 CGTTTATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATAGTATTTCAAAGGTGTA
* ** * *
63370919 TGGAAAGAGAAACTTACCCTATTCTCTTTGATTTCACCAAATAAAATAGACTCTTAGCCTTCCAG
386 TGAAAAGAGAAACTTACCCT-TTCTCTTTGATTTCACCAAA-AAAAGGGACTTTTGGCCTTCCAG
* * * * * * *
63370984 TCGCCACCGACGATAGCACCGTCACCAGATATCGATGGTCGATGCGACAGTAGTTCACCGAATTC
449 TCGCTACCGACGACAGCACCGTCGCCAGATATCGGTGGTCGACGCGACAGCAGTTCGCCGAATTC
*
63371049 TGGAAAAGGGGAAAGAGTTTTGGAGAGAAATTTTTGGTTTTTTTAGGCA-AAGTGCAGAAATATA
514 TGGAAAAGGGGAAAGAGTTTTGGAGAGAAAATTTTGGTTTTTTT-GG-AGAAGTGCAGAAATATA
* * *
63371113 GCTATTTTAAGAAAAATTGACTTAAATAGG-CTTACGACACGGCGTCGTTTTAGGCCAGTGCTCC
577 GCTATTTTAA-AAAAATTGACTTAAATAGGCCCTACGAAACGGCGTCGTTTTGGGCCAGTGCTCC
* * *
63371177 AGACGACAAAACTGTGTCGTTTAGCCCATTGACCCGAGCGCGCGACCCAACCTGCCATGGGATCA
641 AGACGACAAAAC-GCGTCGTTTAGCCC-TTGACCCGCGCGCGCGACCCAACCTGCCAGGGGATCA
* * * * *
63371242 GCGCGTTTTTAACTTTTTGGTTATTTATGCAGCATGTCCTGCCGACTTTTCCAGATATTTTAATT
704 GCGCGTTTTCAACTTTTGGGTTATTTATGCAGCATGTCCTTCCGATTTTTCCACATATTTTAATT
*
63371307 AGATCCTTTTTGTTTATTTTTGTTTCTTTTACTTCGGCCTGATAATTTTGTTTTCAGCAAAATAG
769 AGATCCTTTTT-TTTATTTTTGTTTCTTTTATTTCGGCCTGATAATTTTGTTTTCAGCAAAATAG
63371372 AAACCCTAGCCCCACCA
833 AAACCCTAGCCCCACCA
* * *
63371389 CTAGCAGCACCACCTCTTCACGCCGTACCCTCCACGTGCTGTCTGACACCTTTCTGCCGTCGTTA
1 CTAGCCGCACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTTA
* * * * *
63371454 CCTACAAGTAAAAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGATAAACAATAAAC
66 CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGAGAAATAATAAAC
* *
63371519 AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGGAAGAAATACACAAATTTTT
131 AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGGGAGAAATACACAAATTTTG
* *
63371584 AATAAACAAAAAAGAACAGATTCAAACCATACAAACAAAAAATATAGCAACCAAGCAAAGAAAAA
196 AATAAACAAAAAAGAACAGATTCAAAGCATACAAACGAAAAATATAGCAACCAAGCAAAGAAAAA
*
63371649 GTGAGAAACGTGCAATGGTCCTCTTCATTTTTATTTTCTTTGTTTTCTCTTTTTTTTTTGAAACC
261 GTGAGAAACGTGCAATGGTCCTCTTCATTTTTATTTTCTTT-TTTT-T-TCTTTTTTTT-AAACC
*
63371714 GTTTATACATACAAATATTTCTTTTTTCATACTGTGTATACATATATATATGTATTTCAAAGGTG
322 GTTTATACATACAAATATTTCTTTTTTAATACTGTGTATAC--ATATATA-GTATTTCAAAGGTG
* * * * *
63371779 TATGAAAAGAGAAACTTACCCCTTTCTCTTTGATTTCATCGAAAAAAGGAACTTTTGGCATTCTA
384 TATGAAAAGAGAAACTTA-CCCTTTCTCTTTGATTTCACCAAAAAAAGGGACTTTTGGCCTTCCA
* * * * * * * ** * * * *
63371844 GCCGCTATCGACGGCAACGCCATCGCTAGATATCGGT-GTCCGACATGGCAAC-GATTCACCGGA
448 GTCGCTACCGACGACAGCACCGTCGCCAGATATCGGTGGT-CGACGCGACAGCAG-TTCGCCGAA
* *
63371907 TTCTGGAAAAGGGGAATGAGTTTTGGAGAGAAAATTTTGGTGTTTTTTGGAGAAGTGCAAAAATG
511 TTCTGGAAAAGGGGAAAGAGTTTTGGAGAGAAAATTTTGGT-TTTTTTGGAGAAGTGCAGAAAT-
*** * *
63371972 AT-GCTATTTTAAAATGTTTTTCACTTAAATAGGCCCTACGAAAC-GCATCGTTTTGGGCCAGTG
574 ATAGCTATTTTAAAA--AAATTGACTTAAATAGGCCCTACGAAACGGCGTCGTTTTGGGCCAGTG
* * * * *
63372035 CTGCAGACGACAAAACGGCGTCGTTTAGCCCCTTGACCCGCTCGCGCGACCCGACCTACAAGGGG
637 CTCCAGACGACAAAAC-GCGTCGTTTAG-CCCTTGACCCGCGCGCGCGACCCAACCTGCCAGGGG
*
63372100 ATCTAG-GCGTTTTCAACTTTTGGGTTATTTATGCAGCATGTCCTTCCGATTTTTCCACTTATTT
700 ATC-AGCGCGTTTTCAACTTTTGGGTTATTTATGCAGCATGTCCTTCCGATTTTTCCACATATTT
*
63372164 TAATTAGATCC---------TTTTTGTTTCTTTTATTTCGGCCTGATAATTTTGTTTTCAGCAAC
764 TAATTAGATCCTTTTTTTTATTTTTGTTTCTTTTATTTCGGCCTGATAATTTTGTTTTCAGCAAA
* * *
63372220 ATAGAAGCCCTATCCCTACCA
829 ATAGAAACCCTAGCCCCACCA
* * ** *
63372241 CTAGCCACACCACCTCTTCGCGCCGTACCCTCCACGTACTATCTGACACCTTTCTACCGTCGTTA
1 CTAGCCGCACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTTA
* * * *
63372306 CTTGTAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACATTAGCAAAGAGAAATAAAAAAA
66 CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGAGAAAT-AATAAA
* * *
63372371 CAATGTAATATTGGCAGGCCATGGATTGTAACGTCTTCAAAAAAAGGGAGAACTACAGAAATTTC
130 CAATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGGGAGAAATACACAAATTT-
* *
63372436 T-AATAAACAAAAAA-AAAATGGATTCAAAGCATACAAACGAAAAATATAGCAACCATGCAAAGA
194 TGAATAAACAAAAAAGAACA--GATTCAAAGCATACAAACGAAAAATATAGCAACCAAGCAAAGA
*
63372499 AAAAGTGAGAAACGTGCAATGGTCGTCTTCATTTTTATTTTCTTTGTTTTTTCTTTTTTTTTAAA
257 AAAAGTGAGAAACGTGCAATGGTCCTCTTCATTTTTATTTTCTTT-TTTTTTC-TTTTTTTTAAA
63372564 CCGTTTATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATATGTATTTCAAAGGTG
320 CCGTTTATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATA-GTATTTCAAAGGTG
* *
63372629 TATAAAAAGAGAAACTTACCCCTTTCTCTTTGATTTAACCGAAAAAAATGGG-CTTTTGGCCTTC
384 TATGAAAAGAGAAACTTA-CCCTTTCTCTTTGATTTCACC-AAAAAAA-GGGACTTTTGGCCTTC
* ** * * * * * *
63372693 CAATCGCTGTCGACGACAGCGA-TGTCACC-GAATATCGGTGGCCGACGCGACAGCGGTTC-ACA
446 CAGTCGCTACCGACGACAGC-ACCGTCGCCAG-ATATCGGTGGTCGACGCGACAGCAGTTCGCCG
* * *
63372755 AGATTCTGGAAAAGGGGAAAAAGTTTTGGAGAAAAAATTTTGATTTTTTTGGAGAAGTGCAGAAA
509 A-ATTCTGGAAAAGGGGAAAGAGTTTTGGAGAGAAAATTTTGGTTTTTTTGGAGAAGTGCAGAAA
* * *
63372820 TGA-GGATATTTTAAAAAAAATTTGACTTAAATAGGCCCTACGAAATGGCGTCGTTTTGGGCCAG
573 T-ATAGCTATTTT-AAAAAAA-TTGACTTAAATAGGCCCTACGAAACGGCGTCGTTTTGGGCCAG
* * * * ** * * *
63372884 TGCTCCAGACGACAAAA-GATGGCATTTAGCCCCTTGATCCATGCGCACGACCTAACCTGCAAGG
635 TGCTCCAGACGACAAAACG-CGTCGTTTAG-CCCTTGACCCGCGCGCGCGACCCAACCTGCCAGG
* * * * * * *
63372948 GAATCCA-CACGCTTTT-AACTTTTGGGTTCTTTATGTAGGATGTCCTTCTGATTTATCCACATA
698 GGAT-CAGCGCG-TTTTCAACTTTTGGGTTATTTATGCAGCATGTCCTTCCGATTTTTCCACATA
* * *
63373011 TTTTAATTAGA---TTCTTTTT-TTTTTGTTTCTTTTATTTCTGCCTGATAATTTTGTTTTAAGC
761 TTTTAATTAGATCCTTTTTTTTATTTTTGTTTCTTTTATTTCGGCCTGATAATTTTGTTTTCAGC
*
63373072 AAAATAGAAACCCTAACCCCACCA
826 AAAATAGAAACCCTAGCCCCACCA
** * * *
63373096 CTAGCCGCACCACCTCTTCGCGTTGTTCCCTCTACGTGCCGTCTGACACCTTTCTACCGTCGTTA
1 CTAGCCGCACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTTA
* * * * *
63373161 CCTGCAAGGAATAACAGACACGCAAAGCAACAATATAGAAATAGTAGCAAAGAGAAATAATAAAC
66 CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGAGAAATAATAAAC
* * * *
63373226 AATGTAATATTGCCAGGCTATAGATTGTAACGTTTTAAAAAAAAGGGGAGAAATACACAAATTTT
131 AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAA-GGGAGAAATACACAAATTTT
* * *
63373291 GAATAAAGAAAAAAGAACAGATTCAAAGCATACGAACGAAAAATATTGCAACCAAGC--------
195 GAATAAACAAAAAAGAACAGATTCAAAGCATACAAACGAAAAATATAGCAACCAAGCAAAGAAAA
* *
63373348 ------AAA---GC-----TCCTCTTCATTTTTATTTTCTATATTTTTTCATTTTTTTGAAACCG
260 AGTGAGAAACGTGCAATGGTCCTCTTCATTTTTATTTTCT-TTTTTTTTC-TTTTTTTTAAACCG
* *
63373399 TTTATACATACAAATATTTCTTTTTTAATAATGTGTATACATATATATGTATTTCAAAGGTGTGT
323 TTTATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATA-GTATTTCAAAGGTGTAT
* * * *
63373464 AAAAAGAGAAACTTACCCTTTTCTCTTTGATTTCACCGAAAAAAGGGACTTTTGGCCTTTCGGTC
387 GAAAAGAGAAACTTACCC-TTTCTCTTTGATTTCACCAAAAAAAGGGACTTTTGGCCTTCCAGTC
** * * * * * * * * *
63373529 GCTGTCGACGATAGCGA-CATCACCGGATACCGGTGGCCGACACGGCAGCAGTTC-CCTAGATTC
451 GCTACCGACGACAGC-ACCGTCGCCAGATATCGGTGGTCGACGCGACAGCAGTTCGCCGA-ATTC
* * * *
63373592 TGGAAAAGTGGG-AAGAGTTTTGGAGGGAAAATTTTAGTTTTTTTTGGAGAAGTGCAGAAATGTG
514 TGGAAAAG-GGGAAAGAGTTTTGGAGAGAAAATTTT-GGTTTTTTTGGAGAAGTGCAGAAATATA
*** *
63373656 GCTATTTTAAAAAAAATTGACTTAAATAGGCCCTACGAAACTATGTTGTTTTGGGCCAGTGCTCC
577 GCTATTTT-AAAAAAATTGACTTAAATAGGCCCTACGAAACGGCGTCGTTTTGGGCCAGTGCTCC
* * * * * * *
63373721 AGATGACAAAACGGCGTCGTGTAGCCCATTGACCCCCGCGCGGGACCTAACATGCCATGGGATTC
641 AGACGACAAAAC-GCGTCGTTTAGCCC-TTGACCCGCGCGCGCGACCCAACCTGCCAGGGGA-TC
*
63373786 -GCGCGTTTTCAACTTTTGGGTTCTTTATGCAG
703 AGCGCGTTTTCAACTTTTGGGTTATTTATGCAG
63373818 AATGCACCTT
Statistics
Matches: 7821, Mismatches: 1095, Indels: 663
0.82 0.11 0.07
Matches are distributed among these distances:
811 1 0.00
812 69 0.01
813 76 0.01
814 4 0.00
815 3 0.00
816 2 0.00
818 1 0.00
819 7 0.00
820 3 0.00
823 1 0.00
824 3 0.00
825 2 0.00
826 1 0.00
827 3 0.00
828 16 0.00
829 7 0.00
830 8 0.00
831 169 0.02
832 238 0.03
833 8 0.00
834 7 0.00
835 139 0.02
836 35 0.00
837 177 0.02
838 265 0.03
839 134 0.02
840 369 0.05
841 399 0.05
842 36 0.00
843 121 0.02
844 69 0.01
845 56 0.01
846 360 0.05
847 309 0.04
848 194 0.02
849 18 0.00
850 365 0.05
851 207 0.03
852 280 0.04
853 233 0.03
854 368 0.05
855 456 0.06
856 241 0.03
857 92 0.01
858 408 0.05
859 248 0.03
860 76 0.01
861 139 0.02
862 412 0.05
863 66 0.01
864 16 0.00
865 376 0.05
866 182 0.02
867 104 0.01
868 20 0.00
869 4 0.00
870 1 0.00
871 2 0.00
872 1 0.00
876 2 0.00
877 2 0.00
878 4 0.00
879 3 0.00
880 5 0.00
881 18 0.00
882 13 0.00
883 11 0.00
884 5 0.00
885 3 0.00
886 3 0.00
887 4 0.00
888 79 0.01
889 62 0.01
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (849 bp):
CTAGCCGCACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTTA
CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGAGAAATAATAAAC
AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGGGAGAAATACACAAATTTTG
AATAAACAAAAAAGAACAGATTCAAAGCATACAAACGAAAAATATAGCAACCAAGCAAAGAAAAA
GTGAGAAACGTGCAATGGTCCTCTTCATTTTTATTTTCTTTTTTTTTCTTTTTTTTAAACCGTTT
ATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATAGTATTTCAAAGGTGTATGAAA
AGAGAAACTTACCCTTTCTCTTTGATTTCACCAAAAAAAGGGACTTTTGGCCTTCCAGTCGCTAC
CGACGACAGCACCGTCGCCAGATATCGGTGGTCGACGCGACAGCAGTTCGCCGAATTCTGGAAAA
GGGGAAAGAGTTTTGGAGAGAAAATTTTGGTTTTTTTGGAGAAGTGCAGAAATATAGCTATTTTA
AAAAAATTGACTTAAATAGGCCCTACGAAACGGCGTCGTTTTGGGCCAGTGCTCCAGACGACAAA
ACGCGTCGTTTAGCCCTTGACCCGCGCGCGCGACCCAACCTGCCAGGGGATCAGCGCGTTTTCAA
CTTTTGGGTTATTTATGCAGCATGTCCTTCCGATTTTTCCACATATTTTAATTAGATCCTTTTTT
TTATTTTTGTTTCTTTTATTTCGGCCTGATAATTTTGTTTTCAGCAAAATAGAAACCCTAGCCCC
ACCA
Found at i:63374251 original size:29 final size:29
Alignment explanation
Indices: 63374208--63374351 Score: 143
Period size: 29 Copynumber: 4.9 Consensus size: 29
63374198 TTTTAATTAA
* *
63374208 AAAATTGCAATTTGACCCCTAAACTTTTCT
1 AAAATTACATTTTGACCCCTAAA-TTTTCT
63374238 AAAATTACA-TTTGA-CCCTAAACTTTT-T
1 AAAATTACATTTTGACCCCTAAA-TTTTCT
* * *
63374265 AAAATTACATTTTGACCCTTATATTTTTT
1 AAAATTACATTTTGACCCCTAAATTTTCT
*
63374294 AAAAGTACATTTTGACCCTCTAAATTTTCT
1 AAAATTACATTTTGACCC-CTAAATTTTCT
* *
63374324 CGAAATTACACTTTTG-CCCCAAAATTTT
1 -AAAATTACA-TTTTGACCCCTAAATTTT
63374352 TGCTGCGTTT
Statistics
Matches: 98, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
27 10 0.10
28 21 0.21
29 28 0.29
30 24 0.24
31 10 0.10
32 5 0.05
ACGTcount: A:0.33, C:0.20, G:0.06, T:0.41
Consensus pattern (29 bp):
AAAATTACATTTTGACCCCTAAATTTTCT
Found at i:63374703 original size:21 final size:21
Alignment explanation
Indices: 63374662--63374714 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
63374652 GAAAAGTCGC
*
63374662 AAGCAACCAAAAAGAAAAGCA
1 AAGCAAACAAAAAGAAAAGCA
**
63374683 AAGCAAACAAAAAGAGTAGCA
1 AAGCAAACAAAAAGAAAAGCA
63374704 AA--AAACAAAAA
1 AAGCAAACAAAAA
63374715 AACAAAAGAG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 9 0.31
21 20 0.69
ACGTcount: A:0.70, C:0.15, G:0.13, T:0.02
Consensus pattern (21 bp):
AAGCAAACAAAAAGAAAAGCA
Found at i:63374881 original size:25 final size:23
Alignment explanation
Indices: 63374847--63374900 Score: 81
Period size: 25 Copynumber: 2.3 Consensus size: 23
63374837 GCAAGGTCGA
*
63374847 AAAAAGGAAAAAGAAATAGAGAAG
1 AAAAAGGAAAAAGAAAAAGAG-AG
63374871 AAGAAAGGAAAAAGAAAAAGAGAG
1 AA-AAAGGAAAAAGAAAAAGAGAG
63374895 AAAAAG
1 AAAAAG
63374901 AAAGAAATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 4 0.14
24 6 0.21
25 18 0.64
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.02
Consensus pattern (23 bp):
AAAAAGGAAAAAGAAAAAGAGAG
Found at i:63374891 original size:17 final size:16
Alignment explanation
Indices: 63374856--63374903 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 16
63374846 AAAAAAGGAA
*
63374856 AAAGAAATAGAGAAGAAG
1 AAAGAAA-A-AGAAAAAG
63374874 AAAGGAAAAAGAAAAAG
1 AAA-GAAAAAGAAAAAG
*
63374891 AGAGAAAAAGAAA
1 AAAGAAAAAGAAA
63374904 GAAATAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 10 0.37
17 9 0.33
18 4 0.15
19 4 0.15
ACGTcount: A:0.73, C:0.00, G:0.25, T:0.02
Consensus pattern (16 bp):
AAAGAAAAAGAAAAAG
Found at i:63374902 original size:27 final size:25
Alignment explanation
Indices: 63374849--63374904 Score: 76
Period size: 27 Copynumber: 2.2 Consensus size: 25
63374839 AAGGTCGAAA
* *
63374849 AAAGGAAAAAGAAATAGAGAAGAAG
1 AAAGGAAAAAGAAAGAGAGAAAAAG
63374874 AAAGGAAAAAGAAAAAGAGAGAAAAAG
1 AAAGGAAAAAG--AAAGAGAGAAAAAG
63374901 AAAG
1 AAAG
63374905 AAATAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 11 0.41
27 16 0.59
ACGTcount: A:0.71, C:0.00, G:0.27, T:0.02
Consensus pattern (25 bp):
AAAGGAAAAAGAAAGAGAGAAAAAG
Found at i:63375407 original size:20 final size:21
Alignment explanation
Indices: 63375382--63375421 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
63375372 AAAAAATATT
63375382 CAAAAA-TCATCGT-TTTTAAA
1 CAAAAATTC-TCGTATTTTAAA
63375402 CAAAAATTCTCGTATTTTAA
1 CAAAAATTCTCGTATTTTAA
63375422 TAAAATCCCG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.42, C:0.15, G:0.05, T:0.38
Consensus pattern (21 bp):
CAAAAATTCTCGTATTTTAAA
Found at i:63375720 original size:19 final size:18
Alignment explanation
Indices: 63375696--63375801 Score: 78
Period size: 19 Copynumber: 5.8 Consensus size: 18
63375686 TCAGATATTT
63375696 TCGTGTTTCTAAAAAATTC
1 TCGTGTTTC-AAAAAATTC
63375715 TCGTGTTTCACAAAAATT-
1 TCGTGTTTCA-AAAAATTC
*
63375733 TCGTCTTTTC--AAAATTC
1 TCGT-GTTTCAAAAAATTC
* *
63375750 CCGTGTTTC-AAAAATTT
1 TCGTGTTTCAAAAAATTC
*
63375767 TCATGTTTTCAAAAAAATTTC
1 TCGTG-TTTC-AAAAAA-TTC
*
63375788 TCTTG-TTCAAAAAA
1 TCGTGTTTCAAAAAA
63375802 ATTTTTGTGT
Statistics
Matches: 71, Mismatches: 8, Indels: 17
0.74 0.08 0.18
Matches are distributed among these distances:
16 10 0.14
17 12 0.17
18 15 0.21
19 23 0.32
20 5 0.07
21 6 0.08
ACGTcount: A:0.33, C:0.17, G:0.08, T:0.42
Consensus pattern (18 bp):
TCGTGTTTCAAAAAATTC
Found at i:63375755 original size:35 final size:34
Alignment explanation
Indices: 63375708--63375780 Score: 101
Period size: 34 Copynumber: 2.1 Consensus size: 34
63375698 GTGTTTCTAA
* *
63375708 AAAATTCTCGTGTTTCACAAAAATTTCGTCTTTTC
1 AAAATTCCCGTGTTTCA-AAAAATTTCATCTTTTC
* *
63375743 AAAATTCCCGTGTTTCAAAAATTTTCATGTTTTC
1 AAAATTCCCGTGTTTCAAAAAATTTCATCTTTTC
63375777 AAAA
1 AAAA
63375781 AAATTTCTCT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
34 18 0.53
35 16 0.47
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.41
Consensus pattern (34 bp):
AAAATTCCCGTGTTTCAAAAAATTTCATCTTTTC
Found at i:63375785 original size:53 final size:53
Alignment explanation
Indices: 63375697--63375799 Score: 138
Period size: 53 Copynumber: 1.9 Consensus size: 53
63375687 CAGATATTTT
* *
63375697 CGTGTTTCTAAAAAATTCTCGTGTTTCACAAAAATTTCGTCTT-TTCAAAATTCC
1 CGTGTTTC-AAAAAATTCTCATGTTTCAAAAAAATTTC-TCTTGTTCAAAATTCC
*
63375751 CGTGTTTC-AAAAATTTTCATGTTTTCAAAAAAATTTCTCTTGTTCAAAA
1 CGTGTTTCAAAAAATTCTCATG-TTTCAAAAAAATTTCTCTTGTTCAAAA
63375800 AAATTTTTGT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
52 15 0.34
53 21 0.48
54 8 0.18
ACGTcount: A:0.32, C:0.17, G:0.09, T:0.42
Consensus pattern (53 bp):
CGTGTTTCAAAAAATTCTCATGTTTCAAAAAAATTTCTCTTGTTCAAAATTCC
Found at i:63375812 original size:18 final size:19
Alignment explanation
Indices: 63375759--63375813 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
63375749 CCCGTGTTTC
*
63375759 AAAAATTTTCATGTTTTCAA
1 AAAAATTTTC-TGTGTTCAA
63375779 AAAAATTTCTCT-TGTTCAA
1 AAAAATTT-TCTGTGTTCAA
63375798 AAAAATTTT-TGTGTTC
1 AAAAATTTTCTGTGTTC
63375814 TTTTTTTAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
17 1 0.03
18 6 0.19
19 14 0.44
20 9 0.28
21 2 0.06
ACGTcount: A:0.36, C:0.11, G:0.07, T:0.45
Consensus pattern (19 bp):
AAAAATTTTCTGTGTTCAA
Found at i:63376042 original size:15 final size:15
Alignment explanation
Indices: 63376024--63376053 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
63376014 AAAAAATTCG
63376024 CGTGTTTAAAAAAAT
1 CGTGTTTAAAAAAAT
*
63376039 CGTGTTTCAAAAAAT
1 CGTGTTTAAAAAAAT
63376054 TTTCATGTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.10, G:0.13, T:0.33
Consensus pattern (15 bp):
CGTGTTTAAAAAAAT
Found at i:63376063 original size:18 final size:18
Alignment explanation
Indices: 63375979--63376054 Score: 63
Period size: 17 Copynumber: 4.4 Consensus size: 18
63375969 TGTTTTTTTT
63375979 AAAAATTCTCGTGTTTC-
1 AAAAATTCTCGTGTTTCA
* *
63375996 ACAAA-TCTTCATGTTTTCA
1 AAAAATTC-TCGTG-TTTCA
*
63376015 AAAAATTCGCGTGTTT-A
1 AAAAATTCTCGTGTTTCA
*
63376032 AAAAA--ATCGTGTTTCA
1 AAAAATTCTCGTGTTTCA
63376048 AAAAATT
1 AAAAATT
63376055 TTCATGTTTT
Statistics
Matches: 45, Mismatches: 7, Indels: 13
0.69 0.11 0.20
Matches are distributed among these distances:
15 7 0.16
16 8 0.18
17 14 0.31
18 7 0.16
19 7 0.16
20 2 0.04
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (18 bp):
AAAAATTCTCGTGTTTCA
Found at i:63376089 original size:18 final size:18
Alignment explanation
Indices: 63376008--63376092 Score: 61
Period size: 18 Copynumber: 4.7 Consensus size: 18
63375998 AAATCTTCAT
63376008 GTTTTC-AAAAAATTCGC
1 GTTTTCAAAAAAATTCGC
*
63376025 GTGTTT-AAAAAAA-TCGT
1 GT-TTTCAAAAAAATTCGC
* **
63376042 G-TTTCAAAAAATTTTCAT
1 GTTTTCAAAAAA-ATTCGC
*
63376060 GTTTTTAAAAAAAAATTCGC
1 G-TTTT-CAAAAAAATTCGC
63376080 GTTTTCAAAAAAA
1 GTTTTCAAAAAAA
63376093 AATCTCGTGT
Statistics
Matches: 52, Mismatches: 8, Indels: 15
0.69 0.11 0.20
Matches are distributed among these distances:
15 3 0.06
16 6 0.12
17 6 0.12
18 20 0.38
19 4 0.08
20 7 0.13
21 6 0.12
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (18 bp):
GTTTTCAAAAAAATTCGC
Found at i:63376107 original size:20 final size:20
Alignment explanation
Indices: 63376066--63376108 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
63376056 TCATGTTTTT
*
63376066 AAAAAAAAATTCGCGTTTTC
1 AAAAAAAAATTCGCGTTGTC
*
63376086 AAAAAAAAA-TCTCGTGTGTC
1 AAAAAAAAATTCGCGT-TGTC
63376106 AAA
1 AAA
63376109 TTTTCGTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.49, C:0.14, G:0.12, T:0.26
Consensus pattern (20 bp):
AAAAAAAAATTCGCGTTGTC
Found at i:63376143 original size:19 final size:18
Alignment explanation
Indices: 63376106--63376148 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
63376096 CTCGTGTGTC
* *
63376106 AAATTTTCGTGTTTTCAA
1 AAATTTTCGTATTTCCAA
63376124 AAATTTCTCGTATTTCC-A
1 AAATTT-TCGTATTTCCAA
63376142 AAATTTT
1 AAATTTT
63376149 TAACTTTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 1 0.05
18 13 0.59
19 8 0.36
ACGTcount: A:0.30, C:0.14, G:0.07, T:0.49
Consensus pattern (18 bp):
AAATTTTCGTATTTCCAA
Found at i:63376271 original size:17 final size:17
Alignment explanation
Indices: 63376259--63376459 Score: 153
Period size: 17 Copynumber: 11.8 Consensus size: 17
63376249 AAAAAAAATG
63376259 TCGTGTTTTAAAAATTT
1 TCGTGTTTTAAAAATTT
63376276 TCGTGTTTCT-AAAA-TT
1 TCGTGTTT-TAAAAATTT
* *
63376292 TCACTGTTTTAAAAATTC
1 TC-GTGTTTTAAAAATTT
* *
63376310 TCGTG-TTTCAAAATTG
1 TCGTGTTTTAAAAATTT
63376326 TCGTGTTTTAAAAATTT
1 TCGTGTTTTAAAAATTT
63376343 TCGTGTTTCT-AAAATTT
1 TCGTGTTT-TAAAAATTT
* * **
63376360 TCCTGTTTTAAGAATCC
1 TCGTGTTTTAAAAATTT
* * *
63376377 TCGTGTTTCAAAAAAAATG
1 TCGTGTTT--TAAAAATTT
*
63376396 TCGCGTTTTAAAAATTT
1 TCGTGTTTTAAAAATTT
*
63376413 TCGTG-TTTAAAAATTC
1 TCGTGTTTTAAAAATTT
* * * *
63376429 CCGTG-CTTCAAAATTC
1 TCGTGTTTTAAAAATTT
63376445 TCGTGTTTTTAAAAA
1 TCGTG-TTTTAAAAA
63376460 AAAAGGTTCT
Statistics
Matches: 144, Mismatches: 29, Indels: 21
0.74 0.15 0.11
Matches are distributed among these distances:
16 47 0.33
17 75 0.52
18 11 0.08
19 11 0.08
ACGTcount: A:0.29, C:0.13, G:0.12, T:0.45
Consensus pattern (17 bp):
TCGTGTTTTAAAAATTT
Found at i:63376305 original size:34 final size:33
Alignment explanation
Indices: 63376253--63376420 Score: 178
Period size: 34 Copynumber: 4.9 Consensus size: 33
63376243 TGTTTCAAAA
* *
63376253 AAAATGTCGTGTTTTAAAAATTTTCGTGTTTCT
1 AAAATTTCCTGTTTTAAAAATTTTCGTGTTTCT
*
63376286 AAAATTTCACTGTTTTAAAAATTCTCGTGTTTC-
1 AAAATTTC-CTGTTTTAAAAATTTTCGTGTTTCT
*
63376319 AAAATTGTCGTGTTTTAAAAATTTTCGTGTTTCT
1 AAAATT-TCCTGTTTTAAAAATTTTCGTGTTTCT
* ** *
63376353 AAAATTTTCCTGTTTTAAGAATCCTCGTGTTTCAAAA
1 AAAA-TTTCCTGTTTTAAAAATTTTCGTGTTTC---T
*
63376390 AAAATGTCGC-GTTTTAAAAATTTTCGTGTTT
1 AAAATTTC-CTGTTTTAAAAATTTTCGTGTTT
63376421 AAAAATTCCC
Statistics
Matches: 113, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
33 35 0.31
34 50 0.44
35 2 0.02
36 21 0.19
37 5 0.04
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.46
Consensus pattern (33 bp):
AAAATTTCCTGTTTTAAAAATTTTCGTGTTTCT
Found at i:63376333 original size:67 final size:68
Alignment explanation
Indices: 63376240--63376420 Score: 267
Period size: 67 Copynumber: 2.6 Consensus size: 68
63376230 AAACAGAAAA
63376240 TCGTGTTTCAAAAAAAATGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAA-TTTCACTGTTTTAA
1 TCGTGTTTC--AAAAAATGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAATTTTC-CTGTTTTAA
*
63376304 AAATTC
63 AAATCC
* *
63376310 TCGTGTTTC-AAAATTGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAATTTTCCTGTTTTAAGAA
1 TCGTGTTTCAAAAAATGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAATTTTCCTGTTTTAAAAA
63376374 TCC
66 TCC
*
63376377 TCGTGTTTCAAAAAAAATGTCGCGTTTTAAAAATTTTCGTGTTT
1 TCGTGTTTC--AAAAAATGTCGTGTTTTAAAAATTTTCGTGTTT
63376421 AAAAATTCCC
Statistics
Matches: 102, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
67 59 0.58
68 4 0.04
70 39 0.38
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.45
Consensus pattern (68 bp):
TCGTGTTTCAAAAAATGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAATTTTCCTGTTTTAAAAA
TCC
Done.