Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 217 of 221
Found at i:63503143 original size:110 final size:109
Alignment explanation
Indices: 63502908--63503307 Score: 608
Period size: 109 Copynumber: 3.7 Consensus size: 109
63502898 ATATTTGGCA
* * *
63502908 ATTTGGTTAAACGAG--AAATCGAAACCCAGCACCTTAGGGCACGTTCCTCAAATTTCCAAACGC
1 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTCCTCGAATTTCCAAACGC
* *
63502971 AAAACATTGCCTTATTTTGAATTTTTTG-AAAGGATATTTAGCT
66 AAAACATTGCCTTATTTTGAAATTTTTGAAAAGGATATTAAGCT
* * * *
63503014 ATTTGGTTGAATGAGAAAAATCGACACCCAGCACCTTAGGGTATGTTTTCTCGAATTTCCAAACG
1 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACG-TTCCTCGAATTTCCAAACG
* *
63503079 CAAAACATTGTCATATTTTGAAATTTTTGAAAAGGATATTAAGCT
65 CAAAACATTGCCTTATTTTGAAATTTTTGAAAAGGATATTAAGCT
63503124 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTCCTCGAATTTCCAAACGC
1 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTCCTCGAATTTCCAAACGC
*
63503189 AAAATATTGCCTTATTTTGAAATTTTTGAAAAGGATATTAAGCT
66 AAAACATTGCCTTATTTTGAAATTTTTGAAAAGGATATTAAGCT
* * *
63503233 ATTTGGTTGAACGAGAAAAATCGACACCCAACACCTTAGGGCATGTTTTCTCGAATTTCCAAACG
1 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACG-TTCCTCGAATTTCCAAACG
* *
63503298 CTAAATATTG
65 CAAAACATTG
63503308 TCTCAATTAG
Statistics
Matches: 267, Mismatches: 22, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
106 13 0.05
108 25 0.09
109 146 0.55
110 83 0.31
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (109 bp):
ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTCCTCGAATTTCCAAACGC
AAAACATTGCCTTATTTTGAAATTTTTGAAAAGGATATTAAGCT
Found at i:63503289 original size:219 final size:216
Alignment explanation
Indices: 63502908--63503309 Score: 678
Period size: 219 Copynumber: 1.8 Consensus size: 216
63502898 ATATTTGGCA
63502908 ATTTGGTTAAACGAGAAATCGAAACCCAGCACCTTAGGGCACGTTCCTCAAATTTCCAAACGCAA
1 ATTTGGTTAAACGAGAAATCGAAACCCAGCACCTTAGGGCACGTTCCTCAAATTTCCAAACGCAA
* * *
63502973 AACATTGCCTTATTTTGAATTTTTTGAAAGGATATTTAGCTATTTGGTTGAATGAGAAAAATCGA
66 AACATTGCCTTATTTTGAAATTTTTGAAAGGATATTAAGCTATTTGGTTGAACGAGAAAAATCGA
* *
63503038 CACCCAGCACCTTAGGGTATGTTTTCTCGAATTTCCAAACGCAAAACATTGTCATATTTTGAAAT
131 CACCCAACACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGTCATATTTTGAAAT
63503103 TTTTGAAAAGGATATTAAGCT
196 TTTTGAAAAGGATATTAAGCT
* * *
63503124 ATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTCCTCGAATTTCCAAACGC
1 ATTTGGTTAAACGAG--AAATCGAAACCCAGCACCTTAGGGCACGTTCCTCAAATTTCCAAACGC
*
63503189 AAAATATTGCCTTATTTTGAAATTTTTGAAAAGGATATTAAGCTATTTGGTTGAACGAGAAAAAT
64 AAAACATTGCCTTATTTTGAAATTTTTG-AAAGGATATTAAGCTATTTGGTTGAACGAGAAAAAT
* *
63503254 CGACACCCAACACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCTAAATATTGTC
128 CGACACCCAACACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGTC
63503310 TCAATTAGAA
Statistics
Matches: 172, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
216 14 0.08
218 72 0.42
219 86 0.50
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.31
Consensus pattern (216 bp):
ATTTGGTTAAACGAGAAATCGAAACCCAGCACCTTAGGGCACGTTCCTCAAATTTCCAAACGCAA
AACATTGCCTTATTTTGAAATTTTTGAAAGGATATTAAGCTATTTGGTTGAACGAGAAAAATCGA
CACCCAACACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGTCATATTTTGAAAT
TTTTGAAAAGGATATTAAGCT
Found at i:63503971 original size:14 final size:13
Alignment explanation
Indices: 63503946--63503982 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
63503936 TTAAATAAGT
63503946 AAATATAAAATAA
1 AAATATAAAATAA
63503959 AAATATAACAATAA
1 AAATATAA-AATAA
*
63503973 TAATATAAAA
1 AAATATAAAA
63503983 CTTATGATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (13 bp):
AAATATAAAATAA
Found at i:63504046 original size:15 final size:16
Alignment explanation
Indices: 63504019--63504062 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
63504009 AAAATATACA
63504019 TATATATAA-AATAA-G
1 TATA-ATAATAATAACG
63504034 TATAATAATAATAACG
1 TATAATAATAATAACG
63504050 -ATAATAATAATAA
1 TATAATAATAATAA
63504063 TAATAGGACT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 4 0.15
15 22 0.81
16 1 0.04
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (16 bp):
TATAATAATAATAACG
Found at i:63504712 original size:22 final size:21
Alignment explanation
Indices: 63504664--63504713 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
63504654 ATTTTCGTTT
* *
63504664 AAGAAATAAAAAAAAAGGAAA
1 AAGAAACAAAAAAAAAAGAAA
63504685 ATAGAAACAACAAAAAAAAGAAA
1 A-AGAAACAA-AAAAAAAAGAAA
63504708 AAGAAA
1 AAGAAA
63504714 ATGGATTGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 1 0.04
22 12 0.48
23 12 0.48
ACGTcount: A:0.80, C:0.04, G:0.12, T:0.04
Consensus pattern (21 bp):
AAGAAACAAAAAAAAAAGAAA
Found at i:63504956 original size:20 final size:20
Alignment explanation
Indices: 63504926--63504972 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
63504916 CGCAAGTGGT
*
63504926 GTGGTCGACGTGATGTTGGCG
1 GTGG-CGACGTGACGTTGGCG
63504947 GTGGCGACGTGACGTTGGCG
1 GTGGCGACGTGACGTTGGCG
*
63504967 GCGGCG
1 GTGGCG
63504973 GCGGCAGGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.09, C:0.19, G:0.51, T:0.21
Consensus pattern (20 bp):
GTGGCGACGTGACGTTGGCG
Found at i:63509127 original size:85 final size:85
Alignment explanation
Indices: 63509024--63509195 Score: 335
Period size: 85 Copynumber: 2.0 Consensus size: 85
63509014 ATATAATTAA
63509024 AACTTTTGAATTTGTTATTATTTTGCATGTGTTACCATGTGAATTTTTTAGAACATCTATATAAT
1 AACTTTTGAATTTGTTATTATTTTGCATGTGTTACCATGTGAATTTTTTAGAACATCTATATAAT
63509089 TAAAATGTAAAATTTCCACT
66 TAAAATGTAAAATTTCCACT
*
63509109 AACTTTTGAATTTGTTATTATTTTGCATGTGTTACGATGTGAATTTTTTAGAACATCTATATAAT
1 AACTTTTGAATTTGTTATTATTTTGCATGTGTTACCATGTGAATTTTTTAGAACATCTATATAAT
63509174 TAAAATGTAAAATTTCCACT
66 TAAAATGTAAAATTTCCACT
63509194 AA
1 AA
63509196 ATACAATATT
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 86 1.00
ACGTcount: A:0.34, C:0.10, G:0.11, T:0.45
Consensus pattern (85 bp):
AACTTTTGAATTTGTTATTATTTTGCATGTGTTACCATGTGAATTTTTTAGAACATCTATATAAT
TAAAATGTAAAATTTCCACT
Found at i:63513388 original size:6 final size:6
Alignment explanation
Indices: 63513377--63513408 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
63513367 AGTCATCTTC
63513377 TTTTCT TTTTCT TTTTCT TTTT-T TTTTCT TTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTT
63513409 CTATTTACTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (6 bp):
TTTTCT
Found at i:63513390 original size:11 final size:11
Alignment explanation
Indices: 63513374--63513408 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
63513364 TGTAGTCATC
63513374 TTCTTTTCTTT
1 TTCTTTTCTTT
63513385 TTCTTTTTCTTT
1 TTC-TTTTCTTT
*
63513397 TTTTTTTCTTT
1 TTCTTTTCTTT
63513408 T
1 T
63513409 CTATTTACTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (11 bp):
TTCTTTTCTTT
Found at i:63513396 original size:17 final size:17
Alignment explanation
Indices: 63513374--63513408 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
63513364 TGTAGTCATC
63513374 TTCTTTTCTTTTTCTTT
1 TTCTTTTCTTTTTCTTT
*
63513391 TTCTTTTTTTTTTCTTT
1 TTCTTTTCTTTTTCTTT
63513408 T
1 T
63513409 CTATTTACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (17 bp):
TTCTTTTCTTTTTCTTT
Found at i:63513945 original size:6 final size:6
Alignment explanation
Indices: 63513931--63513994 Score: 101
Period size: 6 Copynumber: 10.5 Consensus size: 6
63513921 TGAATGCAAC
* *
63513931 AAGGGAG AAGGAG AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG AAGTGG
1 AAGGG-G AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG
63513980 AAGGGG AAGGGG AAG
1 AAGGGG AAGGGG AAG
63513995 ATAAGGAACT
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
6 49 0.92
7 4 0.08
ACGTcount: A:0.38, C:0.00, G:0.61, T:0.02
Consensus pattern (6 bp):
AAGGGG
Found at i:63514051 original size:11 final size:11
Alignment explanation
Indices: 63514035--63514064 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
63514025 TGTAGTCATC
63514035 TTCTTTTCTTT
1 TTCTTTTCTTT
*
63514046 TTCTTTTTTTT
1 TTCTTTTCTTT
63514057 TTCTTTTC
1 TTCTTTTC
63514065 CATTTACTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (11 bp):
TTCTTTTCTTT
Found at i:63516845 original size:13 final size:14
Alignment explanation
Indices: 63516819--63516847 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
63516809 CTACTAAAAA
63516819 AATATTTTTATATT
1 AATATTTTTATATT
63516833 AATATTTTT-TATT
1 AATATTTTTATATT
63516846 AA
1 AA
63516848 AATTGAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
AATATTTTTATATT
Found at i:63520418 original size:24 final size:24
Alignment explanation
Indices: 63520383--63520440 Score: 82
Period size: 24 Copynumber: 2.4 Consensus size: 24
63520373 GTGGAATTCG
*
63520383 ATACATACATATGTA-ATCGGTGTC
1 ATACATACATATATAGAT-GGTGTC
*
63520407 ATTCATACATATATAGATGGTGTC
1 ATACATACATATATAGATGGTGTC
63520431 ATACATACAT
1 ATACATACAT
63520441 GCTCTGAGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 28 0.93
25 2 0.07
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (24 bp):
ATACATACATATATAGATGGTGTC
Found at i:63520571 original size:20 final size:20
Alignment explanation
Indices: 63520546--63520613 Score: 84
Period size: 20 Copynumber: 3.4 Consensus size: 20
63520536 GTGGAATTCA
63520546 ATACATACATAGATGGTGTC
1 ATACATACATAGATGGTGTC
* *
63520566 ATACATACGTAGA-GAGTTTC
1 ATACATACATAGATG-GTGTC
* *
63520586 ATACATACATATATGTTGTC
1 ATACATACATAGATGGTGTC
63520606 ATACATAC
1 ATACATAC
63520614 GTTCATACAT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
19 1 0.03
20 38 0.95
21 1 0.03
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (20 bp):
ATACATACATAGATGGTGTC
Found at i:63520936 original size:4 final size:4
Alignment explanation
Indices: 63520927--63520972 Score: 92
Period size: 4 Copynumber: 11.5 Consensus size: 4
63520917 CGGAATTCAT
63520927 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TA
63520973 TGTTCTAGAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 42 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (4 bp):
TACA
Found at i:63526358 original size:20 final size:21
Alignment explanation
Indices: 63526329--63526371 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
63526319 TTTTTTGGTT
*
63526329 AAAAATTACCTGAATTAACCG
1 AAAAATTACCCGAATTAACCG
*
63526350 AAAAA-TACCCGAATTACCCG
1 AAAAATTACCCGAATTAACCG
63526370 AA
1 AA
63526372 TTTTTTATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.49, C:0.23, G:0.09, T:0.19
Consensus pattern (21 bp):
AAAAATTACCCGAATTAACCG
Found at i:63526522 original size:13 final size:13
Alignment explanation
Indices: 63526504--63526537 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
63526494 TTTTAGTTTT
63526504 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
63526517 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
63526530 ATTGGGTT
1 ATTGGGTT
63526538 TGGGCTAGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.44, T:0.41
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:63529844 original size:611 final size:613
Alignment explanation
Indices: 63528696--63530541 Score: 2678
Period size: 611 Copynumber: 3.0 Consensus size: 613
63528686 TAATAGAGGA
* * *
63528696 TTTCTAATAAATTTAATTTCAAATCATCTGGTTTGGATTTTGGAGGACTGATAGGAAGGTAAAC-
1 TTTCTAATAAATTTAATTTCAAATCATCTAGTTTGGATTTTGGAGGACTGATCGGAATGTAAACT
* * *
63528760 TCCC--CA-A-AAGTTTTGAATTATCATATTA--TTTATC--TA--T-TTCCATCGCCTTAGGTT
66 TCCCAAAATAGAAGTTTTGAATTATCATTTTATTTTTTTCTGTATTTATTCCATCGCCTTAGGTT
* * *
63528814 TATTATTTTCTTCACTTGATTGAATATTTTCACATATGAAATGCGATTGAGACAGACTCCAGCTT
131 T-TTATTTTCTTCAATTGATTGAATATTTTCACATATGAAATGCAATTGAAACAGACTCCAGCTT
* *
63528879 AATGAAGCAACCTGAATGCAA-AA---TG--GGGGAAGGGGAAGATAAGGAACTCAAAGGTATTT
195 GATGAAGCAACCTGAATGCAACAAGGGAGAAGGGGAAGGGGAAGATAAGGAACTCAAAGGTATTT
* * *
63528938 CTTGAATTCTGTAGTGATCTTC---------TTTTGTTT-TTTTTTTC-TTTCTATTTACTAAGA
260 CTTGAATTCTGTAGTCATCTTCTTTTTTTTTTTTTTTTTCTTTTTTTCTTTTCTATTTACTAAGG
* *
63528992 AAAGATAAGATGGTCCAAAAAGAAAAAGGGGGACTCGTTTGGATTCAGTGTTTAGCTTTTTCTTT
325 AAAGATAAGATGGTCCAAAAAGAAAAAGGGGGACGCATTTGGATTCAGTGTTTAGCTTTTTCTTT
* *
63529057 TGGTTTGGCGCGAGTTTTATTTGGCTTTTGCCTTTACCCGTACTTTGGCTCAGGTGTGAGTGTCT
390 TGGTTT-G-GC-----TTATTTGGC---T-CCTTTACCCTTACTTTGACTCAGGTGTGAGTGTCT
* * *
63529122 GAGATGGATTGATATGGGTATTTTCAATTTTCTTCTAGGCTTTTTCATGTATTTGTTGGATTTTT
444 GAGATGGATCGAAATGGGTATTTTCAATTTTCTTCTAGGCATTTTCATGTATTTGTTGGATTTTT
63529187 AGAGGGTCATATCTACATATACATATATGCATTGAATGTGGATGTAAGGGATACTTTAAGAAATA
509 AGAGGGTCATATCTACATATACATATATGCATTGAATGTGGATGTAAGGGATACTTTAAGAAATA
*
63529252 TGAAGAGTTAGAACAACATAACCTTTTCCCCCTGGCCATG
574 TGAAGAGTTAGAACAACATAACCTTTTACCCCTGGCCATG
*
63529292 TTTCTAATAAATTTAATTTCAAATCATCTAGTTTGGATTTTGGAGGACTGGTCGGAATGTAAACT
1 TTTCTAATAAATTTAATTTCAAATCATCTAGTTTGGATTTTGGAGGACTGATCGGAATGTAAACT
63529357 TCCCAAAATAGAAGTTTTGAATTATCATTTTATTTTTTTCTGTATTTATTCCCATCGCCTTAGGC
66 TCCCAAAATAGAAGTTTTGAATTATCATTTTATTTTTTTCTGTATTTATT-CCATCGCCTTAGG-
*
63529422 TTTTCATTTTCTTCAATTGATTGAATATTTTCACATATGAAATGCAATTGAAACAGACTCCAGCT
129 TTTTTATTTTCTTCAATTGATTGAATATTTTCACATATGAAATGCAATTGAAACAGACTCCAGCT
63529487 TGATGAAGCAACCTGAATGCAACAAGGGAGAAGGGGAAGGGGAAGATAAGGAACTCAAAGGTATT
194 TGATGAAGCAACCTGAATGCAACAAGGGAGAAGGGGAAGGGGAAGATAAGGAACTCAAAGGTATT
63529552 TCTTGAATTCTGTAGTCATCTTCTTTTTTTTTTTTTTTTTCTTTTTTTCTTTTCTATTTACTAAG
259 TCTTGAATTCTGTAGTCATCTTCTTTTTTTTTTTTTTTTTCTTTTTTTCTTTTCTATTTACTAAG
63529617 GAAAGATAAGATGGTCCAAAAAGAAAAAGGGGGACGCATTTGGATTCAGTGTTTAGCTTTTTCTT
324 GAAAGATAAGATGGTCCAAAAAGAAAAAGGGGGACGCATTTGGATTCAGTGTTTAGCTTTTTCTT
* *
63529682 TTGATTTGGC-T-TTT-GC-CCTTTACCCTTACTTTGACTCAGGTGGGAGTGTCTGAGATGGATC
389 TTGGTTTGGCTTATTTGGCTCCTTTACCCTTACTTTGACTCAGGTGTGAGTGTCTGAGATGGATC
*
63529743 GACATGGGTATTTTCAATTTTCTTCTAGGCATTTTCATGTATTTGTTGGATTTTTAGAGGGTCAT
454 GAAATGGGTATTTTCAATTTTCTTCTAGGCATTTTCATGTATTTGTTGGATTTTTAGAGGGTCAT
* * * * *
63529808 ATCTAGATATACATATATGCATTGGATGTGGATGTAAGGGATACTTTAAGAAATATGGACAATTA
519 ATCTACATATACATATATGCATTGAATGTGGATGTAAGGGATACTTTAAGAAATATGAAGAGTTA
* * *
63529873 GAACAACAGAACCTTTTACCTCTGACCATG
584 GAACAACATAACCTTTTACCCCTGGCCATG
*
63529903 TTTCTAATAAATTTAATTTCAAATAATCTAGTTTGGATTTTGGAGGACTGATCGGAATGTAAACT
1 TTTCTAATAAATTTAATTTCAAATCATCTAGTTTGGATTTTGGAGGACTGATCGGAATGTAAACT
* * *
63529968 CCCCAAAATAGAAGTTTTGAATTATCATTTTATTTATTTATGTATTTAGTTCCATCGCCTTAGGT
66 TCCCAAAATAGAAGTTTTGAATTATCATTTTATTTTTTTCTGTATTTA-TTCCATCGCCTTAGG-
* *
63530033 TTTTTATTTTCTTCAATTGATTGAATATTTTCACATATGATATGCAATTGAAACAGATTCCAGCT
129 TTTTTATTTTCTTCAATTGATTGAATATTTTCACATATGAAATGCAATTGAAACAGACTCCAGCT
63530098 TGATGAAGCAACCTGAATGCAACAAGGGAGAAGGGGAAGGAGAAGGGGAAGATAAGGAACTCAAA
194 TGATGAAGCAACCTGAATGCAACAAGGGAGAA---G--GG-GAAGGGGAAGATAAGGAACTCAAA
*
63530163 GGTATTTCTTGAATTTTGTAGTCATCTTCTTTTCTTTTTCTTTTTTTTTTTCTTTTTTTCTTTTC
253 GGTATTTCTTGAATTCTGTAGTCATCTTC---T-TTTTT-TTTTTTTTTTTCTTTTTTTCTTTTC
* * *
63530228 TATTTACTGAGGAATGATAAGATGGTCCAGAAAGAAAAAGGGGGACGCATTTGGATTCAGTGTTT
313 TATTTACTAAGGAAAGATAAGATGGTCCAAAAAGAAAAAGGGGGACGCATTTGGATTCAGTGTTT
63530293 AGCTTTTTCTTTTGGTTTGGCACGAATTTTATTTGGCTTTTGCCTTTACCCTTACTTTGACTCAG
378 AGCTTTTTCTTTTGGTTTGG--C-----TTATTTGGC---T-CCTTTACCCTTACTTTGACTCAG
63530358 GTGTGAGTGTCTGAGATGGATCGAAATGGGTATTTTCAATTTTCTTCTAGGCATTTTCATGTATT
432 GTGTGAGTGTCTGAGATGGATCGAAATGGGTATTTTCAATTTTCTTCTAGGCATTTTCATGTATT
*
63530423 TGTTGGATTTTTAGAGGGTCATATCTACATATCCATATATGCATTGAATGTGGATGTAAGGGATA
497 TGTTGGATTTTTAGAGGGTCATATCTACATATACATATATGCATTGAATGTGGATGTAAGGGATA
* * *
63530488 CTTTAAGAAATATGAAGGGTTAGAACAACATACCCTTTTACCCTTGGCCATG
562 CTTTAAGAAATATGAAGAGTTAGAACAACATAACCTTTTACCCCTGGCCATG
63530540 TT
1 TT
63530542 AAGTATCTTG
Statistics
Matches: 1130, Mismatches: 62, Indels: 75
0.89 0.05 0.06
Matches are distributed among these distances:
596 60 0.05
597 4 0.00
599 1 0.00
600 1 0.00
601 20 0.02
603 5 0.00
605 2 0.00
607 1 0.00
608 2 0.00
609 92 0.08
610 5 0.00
611 405 0.36
612 2 0.00
613 1 0.00
614 1 0.00
615 55 0.05
616 4 0.00
617 55 0.05
618 1 0.00
620 1 0.00
621 5 0.00
622 106 0.09
624 10 0.01
625 9 0.01
626 83 0.07
630 1 0.00
631 3 0.00
632 2 0.00
637 193 0.17
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.39
Consensus pattern (613 bp):
TTTCTAATAAATTTAATTTCAAATCATCTAGTTTGGATTTTGGAGGACTGATCGGAATGTAAACT
TCCCAAAATAGAAGTTTTGAATTATCATTTTATTTTTTTCTGTATTTATTCCATCGCCTTAGGTT
TTTATTTTCTTCAATTGATTGAATATTTTCACATATGAAATGCAATTGAAACAGACTCCAGCTTG
ATGAAGCAACCTGAATGCAACAAGGGAGAAGGGGAAGGGGAAGATAAGGAACTCAAAGGTATTTC
TTGAATTCTGTAGTCATCTTCTTTTTTTTTTTTTTTTTCTTTTTTTCTTTTCTATTTACTAAGGA
AAGATAAGATGGTCCAAAAAGAAAAAGGGGGACGCATTTGGATTCAGTGTTTAGCTTTTTCTTTT
GGTTTGGCTTATTTGGCTCCTTTACCCTTACTTTGACTCAGGTGTGAGTGTCTGAGATGGATCGA
AATGGGTATTTTCAATTTTCTTCTAGGCATTTTCATGTATTTGTTGGATTTTTAGAGGGTCATAT
CTACATATACATATATGCATTGAATGTGGATGTAAGGGATACTTTAAGAAATATGAAGAGTTAGA
ACAACATAACCTTTTACCCCTGGCCATG
Found at i:63530141 original size:12 final size:12
Alignment explanation
Indices: 63530124--63530148 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
63530114 ATGCAACAAG
63530124 GGAGAAGGGGAA
1 GGAGAAGGGGAA
63530136 GGAGAAGGGGAA
1 GGAGAAGGGGAA
63530148 G
1 G
63530149 ATAAGGAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (12 bp):
GGAGAAGGGGAA
Found at i:63536735 original size:27 final size:26
Alignment explanation
Indices: 63536702--63536767 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 26
63536692 TCTCGATATA
63536702 GTTCTTTGTGAACTTCTCGTTAAAAA-G
1 GTTCTTTGTGAACTTCTCG--AAAAATG
63536729 GTTCTTTGTGAACTTCTCGAAAAATG
1 GTTCTTTGTGAACTTCTCGAAAAATG
*
63536755 GCT-TTTGTGAACT
1 GTTCTTTGTGAACT
63536768 ACCCGTTATA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
25 15 0.41
26 3 0.08
27 19 0.51
ACGTcount: A:0.24, C:0.15, G:0.20, T:0.41
Consensus pattern (26 bp):
GTTCTTTGTGAACTTCTCGAAAAATG
Found at i:63541847 original size:26 final size:27
Alignment explanation
Indices: 63541818--63541872 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
63541808 CTTTAACATG
*
63541818 ATTTTTGGT-TGTTTA-ATTAAAGGTTA
1 ATTTTTGGTAT-TTTATAATAAAGGTTA
63541844 A-TTTTGGTATTTTATAATAAAGGTTA
1 ATTTTTGGTATTTTATAATAAAGGTTA
63541870 ATT
1 ATT
63541873 AATTAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
25 11 0.44
26 13 0.52
27 1 0.04
ACGTcount: A:0.31, C:0.00, G:0.16, T:0.53
Consensus pattern (27 bp):
ATTTTTGGTATTTTATAATAAAGGTTA
Found at i:63542835 original size:23 final size:25
Alignment explanation
Indices: 63542776--63542867 Score: 104
Period size: 26 Copynumber: 3.7 Consensus size: 25
63542766 CTTAACACAA
63542776 CTCG-TATGAGCTTACCGATATATCAG
1 CTCGATATGAGCTTACCG-T-TATCAG
*
63542802 CTC-TTATGAGCTTACCGTT-TCAG
1 CTCGATATGAGCTTACCGTTATCAG
63542825 CTCGATA-GAGCTTACCGTTCATCAG
1 CTCGATATGAGCTTACCGTT-ATCAG
63542850 CTCGGA-ATGAGCTTACCG
1 CTC-GATATGAGCTTACCG
63542868 ATCATGGCTC
Statistics
Matches: 59, Mismatches: 1, Indels: 12
0.82 0.01 0.17
Matches are distributed among these distances:
23 19 0.32
24 3 0.05
25 9 0.15
26 28 0.47
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (25 bp):
CTCGATATGAGCTTACCGTTATCAG
Found at i:63543065 original size:20 final size:20
Alignment explanation
Indices: 63543027--63543065 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
63543017 TATGGATGAA
* *
63543027 TTACTATTGATATGTATAAG
1 TTACTATTGATACGGATAAG
*
63543047 TTACTGTTGATACGGATAA
1 TTACTATTGATACGGATAA
63543066 ATTTCTGTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.41
Consensus pattern (20 bp):
TTACTATTGATACGGATAAG
Found at i:63543454 original size:48 final size:48
Alignment explanation
Indices: 63543383--63543502 Score: 231
Period size: 48 Copynumber: 2.5 Consensus size: 48
63543373 GATGGTTTTA
*
63543383 TTAACACAAATCGTATCTCAATCTCAGCAGGCAGCAACCGATTTTCAC
1 TTAACACAAATCGTATCTCAATCTCAGCAGGCAGCAACCGACTTTCAC
63543431 TTAACACAAATCGTATCTCAATCTCAGCAGGCAGCAACCGACTTTCAC
1 TTAACACAAATCGTATCTCAATCTCAGCAGGCAGCAACCGACTTTCAC
63543479 TTAACACAAATCGTATCTCAATCT
1 TTAACACAAATCGTATCTCAATCT
63543503 TAGTCGAATC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 71 1.00
ACGTcount: A:0.34, C:0.29, G:0.11, T:0.26
Consensus pattern (48 bp):
TTAACACAAATCGTATCTCAATCTCAGCAGGCAGCAACCGACTTTCAC
Found at i:63546907 original size:13 final size:13
Alignment explanation
Indices: 63546889--63546913 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63546879 TAAGATGAAT
63546889 TTGCTTATGTTTG
1 TTGCTTATGTTTG
63546902 TTGCTTATGTTT
1 TTGCTTATGTTT
63546914 TAGATCCTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.08, G:0.20, T:0.64
Consensus pattern (13 bp):
TTGCTTATGTTTG
Found at i:63562279 original size:23 final size:23
Alignment explanation
Indices: 63562253--63562325 Score: 128
Period size: 23 Copynumber: 3.2 Consensus size: 23
63562243 AGTGCCACAT
63562253 TGATATGTAGCCGAAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
*
63562276 TGATATGTAGCCGTAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
*
63562299 TGAAATGTAGCCGAAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
63562322 TGAT
1 TGAT
63562326 CAATAACACT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (23 bp):
TGATATGTAGCCGAAGCTACCAC
Found at i:63562425 original size:8 final size:8
Alignment explanation
Indices: 63562412--63562440 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
63562402 ACCCGGGACT
63562412 CACTGTAA
1 CACTGTAA
63562420 CACTGTAA
1 CACTGTAA
63562428 CACTGTAA
1 CACTGTAA
63562436 CACTG
1 CACTG
63562441 GTCTCTAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (8 bp):
CACTGTAA
Found at i:63575267 original size:5 final size:5
Alignment explanation
Indices: 63575259--63575295 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
63575249 ATTTTACATA
63575259 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT AT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT AT
63575296 TTAAAACATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATAAT
Found at i:63576250 original size:22 final size:20
Alignment explanation
Indices: 63576222--63576311 Score: 81
Period size: 22 Copynumber: 4.1 Consensus size: 20
63576212 AGAACAGTAG
63576222 GCACCGAAGTGCAAATCACTAA
1 GCACCGAAGTGCAAA-CA-TAA
*
63576244 GCACCGAAGTGCAAAACAGTAG
1 GCACCGAAGTGC-AAACA-TAA
*
63576266 GCACTGAAGTGCAGAACGATAA
1 GCACCGAAGTGCA-AAC-ATAA
*
63576288 GCACCAAAGTGCGAAACAGTAA
1 GCACCGAAGTGC-AAACA-TAA
63576310 GC
1 GC
63576312 GCCAAAGCGC
Statistics
Matches: 57, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
21 2 0.04
22 50 0.88
23 5 0.09
ACGTcount: A:0.41, C:0.23, G:0.24, T:0.11
Consensus pattern (20 bp):
GCACCGAAGTGCAAACATAA
Found at i:63576263 original size:44 final size:44
Alignment explanation
Indices: 63576214--63576308 Score: 131
Period size: 44 Copynumber: 2.2 Consensus size: 44
63576204 GCACTAATAG
*
63576214 AACAGTAGGCACCGAAGTGCA-AATC-ACTAAGCACCGAAGTGCAA
1 AACAGTAGGCACCGAAGTGCAGAA-CGA-TAAGCACCAAAGTGCAA
* *
63576258 AACAGTAGGCACTGAAGTGCAGAACGATAAGCACCAAAGTGCGA
1 AACAGTAGGCACCGAAGTGCAGAACGATAAGCACCAAAGTGCAA
63576302 AACAGTA
1 AACAGTA
63576309 AGCGCCAAAG
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
44 43 0.93
45 3 0.07
ACGTcount: A:0.42, C:0.22, G:0.24, T:0.12
Consensus pattern (44 bp):
AACAGTAGGCACCGAAGTGCAGAACGATAAGCACCAAAGTGCAA
Found at i:63578507 original size:42 final size:42
Alignment explanation
Indices: 63578417--63578514 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 42
63578407 ACACGGCCTA
**
63578417 GCACACGGCCGTGCGTGGCAACTCAAAAAGTTACAAGGTCTG
1 GCACACGGCCGTGTATGGCAACTCAAAAAGTTACAAGGTCTG
* * *
63578459 GCACACGGTCGTGTATGGCAACTCAAAGAGTTACACA-GTGT-
1 GCACACGGCCGTGTATGGCAACTCAAAAAGTTACA-AGGTCTG
63578500 GCAACACGGCCGTGT
1 GC-ACACGGCCGTGT
63578515 GTCCCTTTGT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
41 2 0.04
42 45 0.94
43 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.29, T:0.18
Consensus pattern (42 bp):
GCACACGGCCGTGTATGGCAACTCAAAAAGTTACAAGGTCTG
Found at i:63579145 original size:11 final size:13
Alignment explanation
Indices: 63579121--63579152 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
63579111 TAGTTTATTA
63579121 ATATTTTAATATG
1 ATATTTTAATATG
63579134 AT-TTTTAA-ATG
1 ATATTTTAATATG
63579145 ATATTTTA
1 ATATTTTA
63579153 TTAATTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.28
12 11 0.61
13 2 0.11
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (13 bp):
ATATTTTAATATG
Found at i:63583480 original size:19 final size:19
Alignment explanation
Indices: 63583443--63583481 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
63583433 AATACAATAT
63583443 ACATATATGACATGCTGTA
1 ACATATATGACATGCTGTA
*
63583462 ACATA-ATGTCATGCATGTA
1 ACATATATGACATGC-TGTA
63583481 A
1 A
63583482 ACAGGGCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (19 bp):
ACATATATGACATGCTGTA
Found at i:63587570 original size:47 final size:47
Alignment explanation
Indices: 63587514--63587667 Score: 204
Period size: 47 Copynumber: 3.3 Consensus size: 47
63587504 CCGTGGAAAT
*
63587514 ATGTGATATGTGCTTCCATATAAGACAATAGTTGGGCTATGGCATCG
1 ATGTGATATGTGCTTCCATATAAGACCATAGTTGGGCTATGGCATCG
* * *
63587561 ATGTGATATGTGCTTCCATATAAGACCATAGCTGGACTATAGCATC-
1 ATGTGATATGTGCTTCCATATAAGACCATAGTTGGGCTATGGCATCG
* *
63587607 AGTGTGATATGTGCTTCCGTATAAGACCATA-TTCGGGATATGGCATCG
1 A-TGTGATATGTGCTTCCATATAAGACCATAGTT-GGGCTATGGCATCG
*
63587655 GTGTGAATATGTG
1 ATGTG-ATATGTG
63587668 ATCTGTGTAA
Statistics
Matches: 93, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
46 2 0.02
47 84 0.90
48 7 0.08
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (47 bp):
ATGTGATATGTGCTTCCATATAAGACCATAGTTGGGCTATGGCATCG
Found at i:63587621 original size:94 final size:94
Alignment explanation
Indices: 63587515--63587689 Score: 246
Period size: 94 Copynumber: 1.9 Consensus size: 94
63587505 CGTGGAAATA
* *
63587515 TGTGATATGTGCTTCCATATAAGACAATAGTT-GGGCTATGGCATCGATGTG-ATATGTGCTTCC
1 TGTGATATGTGCTTCCATATAAGACAATA-TTCGGGATATGGCATCGATGTGAATATGTG-ATCC
63587578 ATATAAGACCATAGCTGGACTATAGCATCAG
64 ATATAAGACCATAGCTGGACTATAGCATCAG
* * * **
63587609 TGTGATATGTGCTTCCGTATAAGACCATATTCGGGATATGGCATCGGTGTGAATATGTGATCTGT
1 TGTGATATGTGCTTCCATATAAGACAATATTCGGGATATGGCATCGATGTGAATATGTGATCCAT
*
63587674 GTAAGACCATAGCTGG
66 ATAAGACCATAGCTGG
63587690 GTTATGGCTT
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
93 2 0.03
94 62 0.87
95 7 0.10
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (94 bp):
TGTGATATGTGCTTCCATATAAGACAATATTCGGGATATGGCATCGATGTGAATATGTGATCCAT
ATAAGACCATAGCTGGACTATAGCATCAG
Found at i:63587679 original size:47 final size:46
Alignment explanation
Indices: 63587515--63587717 Score: 176
Period size: 47 Copynumber: 4.3 Consensus size: 46
63587505 CGTGGAAATA
* * * * * *
63587515 TGTGATATGTGCTTCCATATAAGACAATAGTTGGGCTATGGCATCGA
1 TGTGATATGTG-ATCCGTATAAGACCATAGCTGGGATATGGCATCGG
* * * *
63587562 TGTGATATGTGCTTCCATATAAGACCATAGCT-GGACTATAGCATCAG
1 TGTGATATGTG-ATCCGTATAAGACCATAGCTGGGA-TATGGCATCGG
* *
63587609 TGTGATATGTGCTTCCGTATAAGACCATA-TTCGGGATATGGCATCGG
1 TGTGATATGTG-ATCCGTATAAGACCATAGCT-GGGATATGGCATCGG
* * * *
63587656 TGTGAATATGTGATCTGTGTAAGACCATAGCTGGGTTATGGCTTCGGTG
1 TGTG-ATATGTGATCCGTATAAGACCATAGCTGGGATATGGCATC-G-G
63587705 TGTGATATGTGAT
1 TGTGATATGTGAT
63587718 TATGTGCAAG
Statistics
Matches: 133, Mismatches: 16, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
46 3 0.02
47 104 0.78
48 21 0.16
49 5 0.04
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (46 bp):
TGTGATATGTGATCCGTATAAGACCATAGCTGGGATATGGCATCGG
Found at i:63587706 original size:94 final size:96
Alignment explanation
Indices: 63587515--63587715 Score: 239
Period size: 94 Copynumber: 2.1 Consensus size: 96
63587505 CGTGGAAATA
* *
63587515 TGTGATATGTGCTTCCATATAAGACAATAGTTGGGCTATGGCATCGATGTGATATGTGCTTCCAT
1 TGTGATATGTGCTTCCATATAAGACAATAGTTGGGATATGGCATCGATGTGATATGTGCATCCAT
63587580 ATAAGACCATAGCTGGACTATAGCATC-A-G
66 ATAAGACCATAGCTGGACTATAGCATCGATG
* * * *
63587609 TGTGATATGTGCTTCCGTATAAGACCATA-TTCGGGATATGGCATCGGTGTGAATATGTG-ATCT
1 TGTGATATGTGCTTCCATATAAGACAATAGTT-GGGATATGGCATCGATGTG-ATATGTGCATCC
* * ** * * *
63587672 GTGTAAGACCATAGCTGGGTTATGGCTTCGGTG
64 ATATAAGACCATAGCTGGACTATAGCATCGATG
63587705 TGTGATATGTG
1 TGTGATATGTG
63587716 ATTATGTGCA
Statistics
Matches: 90, Mismatches: 13, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
93 2 0.02
94 69 0.77
95 7 0.08
96 12 0.13
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (96 bp):
TGTGATATGTGCTTCCATATAAGACAATAGTTGGGATATGGCATCGATGTGATATGTGCATCCAT
ATAAGACCATAGCTGGACTATAGCATCGATG
Found at i:63589450 original size:445 final size:445
Alignment explanation
Indices: 63588621--63589511 Score: 1665
Period size: 445 Copynumber: 2.0 Consensus size: 445
63588611 TTAGAAAGTT
*
63588621 ATACGAGTAGGGACACGAGTGTGTGAACCCACACGGCCTGACCACACGAGCATGTCCCATACCAC
1 ATACGAGTAGGGACACGAGCGTGTGAACCCACACGGCCTGACCACACGAGCATGTCCCATACCAC
63588686 ACGGGCGTGTGACTCTCAATTGTGAGAAAAATTTTAAGATTTTACGAAAAATTCCCAATGAGATT
66 ACGGGCGTGTGACTCTCAATTGTGAGAAAAATTTTAAGATTTTACGAAAAATTCCCAATGAGATT
*
63588751 TAGTCCCGATTTATTTCTAAAGCATGTTTTGGGTTGTGAGGGCCCATATAAAGGACATTATCACT
131 TAGTCCCGATTTATTTCTAAAGCATGTTTTGGGTTGTGAGGGCCCATATAAAGGACATTATCAAT
*
63588816 AGTTTTGAAAAATAAATAGTAATTAACTTGACTTATCTGAAAATGTTTTGTAAATCTTTGGTAAT
196 AGTTTTGAAAAATAAATAGTAATTAACTTGACTTATCTGAAAATGTTCTGTAAATCTTTGGTAAT
63588881 GCATCGTAACCCTGTTTCGACGATGAATACGGGTTAAGAGTGTTACATTTAGTGGTATCAGAGAT
261 GCATCGTAACCCTGTTTCGACGATGAATACGGGTTAAGAGTGTTACATTTAGTGGTATCAGAGAT
* *
63588946 TCGGTTTAGCCGATTCTCGGAACGAATGATATGTGTAAAGTGTATAGAAATACATGCCATACATT
326 TCAGTTTAGCCGATTCTCGGAACGAATGAGATGTGTAAAGTGTATAGAAATACATGCCATACATT
63589011 TATGTTAATGATGAATACTATGTTATGTGTATATTTATGTGAGAGTCAAATTTTG
391 TATGTTAATGATGAATACTATGTTATGTGTATATTTATGTGAGAGTCAAATTTTG
* *
63589066 ATACGAGTAGGGACACGAGCGTGTGAACTCACACGGCCTGACCACACGGGCATGTCCCATACCAC
1 ATACGAGTAGGGACACGAGCGTGTGAACCCACACGGCCTGACCACACGAGCATGTCCCATACCAC
*
63589131 ACGGGCGTGTGACTCTCAATTGTGAGAAAAATTTTGAGATTTTACGAAAAATTCCCAATGAGATT
66 ACGGGCGTGTGACTCTCAATTGTGAGAAAAATTTTAAGATTTTACGAAAAATTCCCAATGAGATT
63589196 TAGTCCCGATTTATTTCTAAAGCATGTTTTGGGTTGTGAGGGCCCATATAAAGGACATTATCAAT
131 TAGTCCCGATTTATTTCTAAAGCATGTTTTGGGTTGTGAGGGCCCATATAAAGGACATTATCAAT
63589261 AGTTTTGAAAAATAAATAGTAATTAACTTGACTTATCTGAAAATGTTCTGTAAATCTTTGGTAAT
196 AGTTTTGAAAAATAAATAGTAATTAACTTGACTTATCTGAAAATGTTCTGTAAATCTTTGGTAAT
* *
63589326 GCATCGTAATCCTGTTTTGACGATGAATACGGGTTAAGAGTGTTACATTTAGTGGTATCAGAGAT
261 GCATCGTAACCCTGTTTCGACGATGAATACGGGTTAAGAGTGTTACATTTAGTGGTATCAGAGAT
* *
63589391 TCAGTTTAGTCGATTCTCGGAATGAATGAGATGTGTAAAGTGTATAGAAATACATGCCATACATT
326 TCAGTTTAGCCGATTCTCGGAACGAATGAGATGTGTAAAGTGTATAGAAATACATGCCATACATT
*
63589456 TATGTTAATGATGAATACTATGTTATGTGTATATTTATGTGAGAGTCAACTTTTG
391 TATGTTAATGATGAATACTATGTTATGTGTATATTTATGTGAGAGTCAAATTTTG
63589511 A
1 A
63589512 AGCTTTACAA
Statistics
Matches: 433, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
445 433 1.00
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (445 bp):
ATACGAGTAGGGACACGAGCGTGTGAACCCACACGGCCTGACCACACGAGCATGTCCCATACCAC
ACGGGCGTGTGACTCTCAATTGTGAGAAAAATTTTAAGATTTTACGAAAAATTCCCAATGAGATT
TAGTCCCGATTTATTTCTAAAGCATGTTTTGGGTTGTGAGGGCCCATATAAAGGACATTATCAAT
AGTTTTGAAAAATAAATAGTAATTAACTTGACTTATCTGAAAATGTTCTGTAAATCTTTGGTAAT
GCATCGTAACCCTGTTTCGACGATGAATACGGGTTAAGAGTGTTACATTTAGTGGTATCAGAGAT
TCAGTTTAGCCGATTCTCGGAACGAATGAGATGTGTAAAGTGTATAGAAATACATGCCATACATT
TATGTTAATGATGAATACTATGTTATGTGTATATTTATGTGAGAGTCAAATTTTG
Found at i:63592700 original size:17 final size:18
Alignment explanation
Indices: 63592676--63592825 Score: 139
Period size: 18 Copynumber: 8.3 Consensus size: 18
63592666 ACGATAATAA
63592676 TTTTTGAAAACACGAAA-
1 TTTTTGAAAACACGAAAT
* *
63592693 TTTATG-AAACATGAGAAT
1 TTTTTGAAAACACGA-AAT
63592711 TTTTTGAAAACACGAAAAT
1 TTTTTGAAAACACG-AAAT
* * *
63592730 TTTTTGAAAACGCTAAAA
1 TTTTTGAAAACACGAAAT
63592748 TTTTTG-AAACACGAAAAT
1 TTTTTGAAAACACG-AAAT
* *
63592766 TTTTTGAAAACGCGAAAA
1 TTTTTGAAAACACGAAAT
63592784 TTTTT--AAACACGAGAATTT
1 TTTTTGAAAACACGA-AA--T
*
63592803 TTTTTGAAAACATGAAAT
1 TTTTTGAAAACACGAAAT
63592821 TTTTT
1 TTTTT
63592826 TGACACGAGA
Statistics
Matches: 107, Mismatches: 15, Indels: 21
0.75 0.10 0.15
Matches are distributed among these distances:
16 14 0.13
17 14 0.13
18 37 0.35
19 32 0.30
20 3 0.03
21 7 0.07
ACGTcount: A:0.43, C:0.09, G:0.12, T:0.36
Consensus pattern (18 bp):
TTTTTGAAAACACGAAAT
Found at i:63592730 original size:19 final size:19
Alignment explanation
Indices: 63592676--63592828 Score: 151
Period size: 19 Copynumber: 8.4 Consensus size: 19
63592666 ACGATAATAA
63592676 TTTTTGAAAACACG-AAA-
1 TTTTTGAAAACACGAAAAT
* * *
63592693 TTTATG-AAACATGAGAAT
1 TTTTTGAAAACACGAAAAT
63592711 TTTTTGAAAACACGAAAAT
1 TTTTTGAAAACACGAAAAT
* *
63592730 TTTTTGAAAACGCTAAAA-
1 TTTTTGAAAACACGAAAAT
63592748 TTTTTG-AAACACGAAAAT
1 TTTTTGAAAACACGAAAAT
*
63592766 TTTTTGAAAACGCGAAAA-
1 TTTTTGAAAACACGAAAAT
*
63592784 TTTTT--AAACACGAGAATTT
1 TTTTTGAAAACACGA-AA-AT
* *
63592803 TTTTTGAAAACATGAAATT
1 TTTTTGAAAACACGAAAAT
63592822 TTTTTGA
1 TTTTTGA
63592829 CACGAGAAAG
Statistics
Matches: 112, Mismatches: 14, Indels: 18
0.78 0.10 0.12
Matches are distributed among these distances:
16 13 0.12
17 18 0.16
18 22 0.20
19 50 0.45
20 2 0.02
21 7 0.06
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.36
Consensus pattern (19 bp):
TTTTTGAAAACACGAAAAT
Found at i:63592756 original size:55 final size:54
Alignment explanation
Indices: 63592676--63592788 Score: 163
Period size: 55 Copynumber: 2.1 Consensus size: 54
63592666 ACGATAATAA
* * *
63592676 TTTTTGAAAACACGAAATTTATGAAACATGAGAATTTTTTGAAAACACGAAAAT
1 TTTTTGAAAACACAAAATTTATGAAACACGAAAATTTTTTGAAAACACGAAAAT
* * *
63592730 TTTTTGAAAACGCTAAAATTTTTGAAACACGAAAATTTTTTGAAAACGCGAAAAT
1 TTTTTGAAAACAC-AAAATTTATGAAACACGAAAATTTTTTGAAAACACGAAAAT
63592785 TTTT
1 TTTT
63592789 AAACACGAGA
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
54 12 0.23
55 40 0.77
ACGTcount: A:0.43, C:0.10, G:0.12, T:0.35
Consensus pattern (54 bp):
TTTTTGAAAACACAAAATTTATGAAACACGAAAATTTTTTGAAAACACGAAAAT
Found at i:63592758 original size:36 final size:36
Alignment explanation
Indices: 63592711--63592805 Score: 156
Period size: 36 Copynumber: 2.6 Consensus size: 36
63592701 ACATGAGAAT
*
63592711 TTTTTGAAAACACGAAAATTTTTTGAAAACGCTAAAA
1 TTTTTG-AAACACGAAAATTTTTTGAAAACGCGAAAA
63592748 TTTTTGAAACACGAAAATTTTTTGAAAACGCGAAAA
1 TTTTTGAAACACGAAAATTTTTTGAAAACGCGAAAA
*
63592784 TTTTT-AAACACGAGAATTTTTT
1 TTTTTGAAACACGAAAATTTTTT
63592806 TTGAAAACAT
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
35 16 0.29
36 34 0.61
37 6 0.11
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.36
Consensus pattern (36 bp):
TTTTTGAAACACGAAAATTTTTTGAAAACGCGAAAA
Found at i:63592806 original size:37 final size:36
Alignment explanation
Indices: 63592718--63592850 Score: 135
Period size: 36 Copynumber: 3.6 Consensus size: 36
63592708 AATTTTTTGA
* *
63592718 AAACACGA-AAATTTTTTGAAAACGCTAAAATTTTT
1 AAACACGAGAATTTTTTTGAAAACGCGAAAATTTTT
*
63592753 GAAACACGA-AAATTTTTTGAAAACGCGAAAATTTTT
1 -AAACACGAGAATTTTTTTGAAAACGCGAAAATTTTT
** *
63592789 AAACACGAGAATTTTTTTTGAAAACATGAAATTTTTT
1 AAACACGAGAA-TTTTTTTGAAAACGCGAAAATTTTT
** *
63592826 TGACACGAGAAAGTTTTTTTAAAAA
1 AAACACGAG-AA-TTTTTTTGAAAA
63592851 AACTCGAAAT
Statistics
Matches: 85, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
35 8 0.09
36 36 0.42
37 28 0.33
38 13 0.15
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.35
Consensus pattern (36 bp):
AAACACGAGAATTTTTTTGAAAACGCGAAAATTTTT
Found at i:63592807 original size:20 final size:20
Alignment explanation
Indices: 63592710--63592883 Score: 106
Period size: 19 Copynumber: 9.2 Consensus size: 20
63592700 AACATGAGAA
*
63592710 TTTTTTGAAAACACGAAA-A
1 TTTTTTGAAAACACGAAATT
* *
63592729 TTTTTTGAAAACGCTAAA--
1 TTTTTTGAAAACACGAAATT
* *
63592747 ATTTTTG-AAACACGAAA-A
1 TTTTTTGAAAACACGAAATT
*
63592765 TTTTTTGAAAACGCGAAA--
1 TTTTTTGAAAACACGAAATT
*
63592783 ATTTTT--AAACACGAGAATT
1 TTTTTTGAAAACACGA-AATT
*
63592802 TTTTTTGAAAACATGAAA-T
1 TTTTTTGAAAACACGAAATT
*
63592821 TTTTTTG-ACACGA-GAAAGTT
1 TTTTTTGAAAAC-ACGAAA-TT
** *
63592841 TTTTTAAAAAAACTCGAAATT
1 TTTTT-TGAAAACACGAAATT
63592862 TTTTTTG-AAACACG-AATT
1 TTTTTTGAAAACACGAAATT
63592880 TTTT
1 TTTT
63592884 ATTTTTTAAG
Statistics
Matches: 123, Mismatches: 19, Indels: 27
0.73 0.11 0.16
Matches are distributed among these distances:
16 7 0.06
17 10 0.08
18 32 0.26
19 45 0.37
20 8 0.07
21 14 0.11
22 7 0.06
ACGTcount: A:0.40, C:0.10, G:0.11, T:0.39
Consensus pattern (20 bp):
TTTTTTGAAAACACGAAATT
Found at i:63592807 original size:55 final size:55
Alignment explanation
Indices: 63592676--63592828 Score: 161
Period size: 55 Copynumber: 2.8 Consensus size: 55
63592666 ACGATAATAA
* *
63592676 TTTTTGAAAAC-ACG-AAATTTATGAAACATGAGAATTTTTTGAAAACACGAAAAT
1 TTTTTGAAAACGA-GAAAATTTTTGAAACATGAAAATTTTTTGAAAACACGAAAAT
** * *
63592730 TTTTTGAAAACGCTAAAATTTTTGAAACACGAAAATTTTTTGAAAACGCGAAAA-
1 TTTTTGAAAACGAGAAAATTTTTGAAACATGAAAATTTTTTGAAAACACGAAAAT
** *
63592784 TTTTT-AAACACGAGAATTTTTTTTGAAAACATGAAATTTTTTTGA
1 TTTTTGAAA-ACGAGAA-AATTTTTG-AAACATGAAAATTTTTTGA
63592829 CACGAGAAAG
Statistics
Matches: 82, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
53 3 0.04
54 21 0.26
55 41 0.50
56 17 0.21
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.36
Consensus pattern (55 bp):
TTTTTGAAAACGAGAAAATTTTTGAAACATGAAAATTTTTTGAAAACACGAAAAT
Found at i:63592843 original size:36 final size:35
Alignment explanation
Indices: 63592674--63592849 Score: 142
Period size: 37 Copynumber: 4.9 Consensus size: 35
63592664 ACACGATAAT
* *
63592674 AATTTTTGAAAACACG-AAA-TTTATG-AAACATGA
1 AATTTTT-TAAACACGAAAATTTTTTGAAAACATGA
* *
63592707 GAATTTTTTGAAAACACGAAAATTTTTTGAAAACGCTAA
1 -AATTTTTT--AAACACGAAAATTTTTTGAAAAC-ATGA
* **
63592746 AATTTTTGAAACACGAAAATTTTTTGAAAACGCGA
1 AATTTTTTAAACACGAAAATTTTTTGAAAACATGA
* *
63592781 AAATTTTTAAACACGAGAATTTTTTTTGAAAACATGA
1 AATTTTTTAAACACGA-AA-ATTTTTTGAAAACATGA
** *
63592818 AATTTTTTTGACACGAGAAAGTTTTTTTAAAA
1 AATTTTTTAAACACGA-AAA-TTTTTTGAAAA
63592850 AAACTCGAAA
Statistics
Matches: 115, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
34 7 0.06
35 22 0.19
36 28 0.24
37 45 0.39
38 11 0.10
39 2 0.02
ACGTcount: A:0.43, C:0.09, G:0.12, T:0.35
Consensus pattern (35 bp):
AATTTTTTAAACACGAAAATTTTTTGAAAACATGA
Found at i:63593385 original size:19 final size:18
Alignment explanation
Indices: 63593363--63593400 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
63593353 TTTTGTTTGT
63593363 TTTTTATTTTCTCTTTTTC
1 TTTTTATTTTCT-TTTTTC
*
63593382 TTTTTCTTTTCTTTTTTC
1 TTTTTATTTTCTTTTTTC
63593400 T
1 T
63593401 CCTCTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTTATTTTCTTTTTTC
Found at i:63593391 original size:26 final size:26
Alignment explanation
Indices: 63593348--63593415 Score: 77
Period size: 26 Copynumber: 2.5 Consensus size: 26
63593338 GCAATTCAGG
*
63593348 CCTTTTTTTGTTTGTTTT-TTATTTTCT
1 CCTTTTTTT-TTTCTTTTCTT-TTTTCT
63593375 -CTTTTTCTTTTTCTTTTCTTTTTTCT
1 CCTTTTT-TTTTTCTTTTCTTTTTTCT
63593401 CCTCTTTTTTTTTCT
1 CCT-TTTTTTTTTCT
63593416 GCAGATTGGG
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
26 19 0.53
27 13 0.36
28 4 0.11
ACGTcount: A:0.01, C:0.18, G:0.03, T:0.78
Consensus pattern (26 bp):
CCTTTTTTTTTTCTTTTCTTTTTTCT
Found at i:63593769 original size:26 final size:26
Alignment explanation
Indices: 63593740--63593808 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 26
63593730 CCCTTTTTTC
63593740 TTTTTTCTTCTCTTTT-TTCTTTCTCT
1 TTTTTTCTTCTCTTTTCTTCTTTCT-T
63593766 TTTTCTTC-TCTCTTTTTCTTCTTTCTT
1 TTTT-TTCTTCTC-TTTTCTTCTTTCTT
*
63593793 TTTCTTCTTCTTCTTT
1 TTTTTTCTTC-TCTTT
63593809 CGGGCCGAAC
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
26 11 0.30
27 16 0.43
28 10 0.27
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (26 bp):
TTTTTTCTTCTCTTTTCTTCTTTCTT
Found at i:63593798 original size:19 final size:19
Alignment explanation
Indices: 63593734--63593809 Score: 84
Period size: 19 Copynumber: 4.0 Consensus size: 19
63593724 TTTTTTCCCT
*
63593734 TTTTTCTTTTTTCTTCTCT-
1 TTTTTC-TTTTTCTTCTTTC
*
63593753 TTTTTCTTTCTCTT-TTTC
1 TTTTTCTTTTTCTTCTTTC
*
63593771 TTCTCTCTTTTTCTTCTTTC
1 TT-TTTCTTTTTCTTCTTTC
*
63593791 TTTTTCTTCTTCTTCTTTC
1 TTTTTCTTTTTCTTCTTTC
63593810 GGGCCGAACT
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
17 2 0.04
18 9 0.19
19 31 0.65
20 6 0.12
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTTTCTTTTTCTTCTTTC
Found at i:63593809 original size:13 final size:12
Alignment explanation
Indices: 63593741--63593809 Score: 79
Period size: 13 Copynumber: 5.5 Consensus size: 12
63593731 CCTTTTTTCT
63593741 TTTTTCTTC-TC
1 TTTTTCTTCTTC
63593752 TTTTTTCTT-TCTC
1 -TTTTTCTTCT-TC
63593765 TTTTTCTTCTCTC
1 TTTTTCTTCT-TC
63593778 TTTTTCTTCTTTC
1 TTTTTCTTC-TTC
63593791 TTTTTCTTCTTC
1 TTTTTCTTCTTC
63593803 TTCTTTC
1 TT-TTTC
63593810 GGGCCGAACT
Statistics
Matches: 52, Mismatches: 0, Indels: 9
0.85 0.00 0.15
Matches are distributed among these distances:
12 21 0.40
13 30 0.58
14 1 0.02
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTCTTC
Found at i:63593809 original size:26 final size:24
Alignment explanation
Indices: 63593734--63593809 Score: 91
Period size: 26 Copynumber: 3.0 Consensus size: 24
63593724 TTTTTTCCCT
63593734 TTTTTCTTTTTTCTTC-TCTTTTTTC
1 TTTTTC-TTTTTCTTCTTC-TTTTTC
*
63593759 TTTCTCTTTTTCTTCTCTCTTTTTC
1 TTTTTCTTTTTCTTCT-TCTTTTTC
63593784 TTCTTTCTTTTTCTTCTTCTTCTTTC
1 TT-TTTCTTTTTCTTCTTCTT-TTTC
63593810 GGGCCGAACT
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
24 9 0.20
25 17 0.38
26 19 0.42
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (24 bp):
TTTTTCTTTTTCTTCTTCTTTTTC
Found at i:63593950 original size:22 final size:23
Alignment explanation
Indices: 63593891--63593951 Score: 63
Period size: 22 Copynumber: 2.6 Consensus size: 23
63593881 GGCACTCCCC
*
63593891 TTTTCTTC-CTCTTCTTTCTTCT
1 TTTTCTTCTCTTTTCTTTCTTCT
63593913 TTTTCTTTCCCTTCTTTTCTTTC-TCT
1 TTTTC-TT--C-TCTTTTCTTTCTTCT
63593939 TTTTCTTCTCTTT
1 TTTTCTTCTCTTT
63593952 GCTTGCTGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
22 10 0.30
23 3 0.09
25 3 0.09
26 8 0.24
27 9 0.27
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (23 bp):
TTTTCTTCTCTTTTCTTTCTTCT
Found at i:63594507 original size:30 final size:30
Alignment explanation
Indices: 63594347--63594506 Score: 123
Period size: 29 Copynumber: 5.4 Consensus size: 30
63594337 TTTTGGGGTA
* * *
63594347 AAAATGTAATTTTAGAAAAATAT-GGGGCT
1 AAAATGTAATTTTAGAAAAGTTTAGGGGCC
* * * *
63594376 AAAATGTAATTTTTGGAAATTTTAAGGGCTC
1 AAAATGTAATTTTAGAAAAGTTTAGGGGC-C
* * *
63594407 -GAATGTAA-TTTACAAAA-TATTAGGGGTC
1 AAAATGTAATTTTAGAAAAGT-TTAGGGGCC
** * *
63594435 AAGGTGTAAATTTAGAAAAG-TTAGGGGTC
1 AAAATGTAATTTTAGAAAAGTTTAGGGGCC
* *
63594464 AAAATGTAATTTTTGAAAAGTTTGGGGGCC
1 AAAATGTAATTTTAGAAAAGTTTAGGGGCC
63594494 AAAATGTAATTTT
1 AAAATGTAATTTT
63594507 TTATTTTTGT
Statistics
Matches: 102, Mismatches: 22, Indels: 13
0.74 0.16 0.09
Matches are distributed among these distances:
28 2 0.02
29 61 0.60
30 39 0.38
ACGTcount: A:0.39, C:0.05, G:0.23, T:0.34
Consensus pattern (30 bp):
AAAATGTAATTTTAGAAAAGTTTAGGGGCC
Found at i:63595824 original size:235 final size:235
Alignment explanation
Indices: 63594666--63596329 Score: 1960
Period size: 235 Copynumber: 7.1 Consensus size: 235
63594656 TATTTTTATT
* * * *
63594666 AAAAAA-AGAAA-TCAAAA-ATAGCC-CGGCATGCGACCCGAAGCTCAACTCACCTCTTG-AATT
1 AAAAAACAGAAATTGAAAAGATA-CCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAA-T
* * * * * *
63594726 ATGAGTTAATCTTCG-AAAAACAAAAATCGAAAA-TACCTTGGCATGTG-CCTGAGGCTCAACTC
64 ATGAGTTGATTTTTGAAAAAACAGAAATTGAAAAGTACCTCGGCATGTGTCC-GAGGCTCAACTC
* * * * * *
63594788 ACAC-ATCGCAATATGAGTTGATTTTTTTG--AACAACAGAAA-TTGAAAAATACCTCAGTGTGC
128 AC-CTCTCGCAATATGAGTTGA-TTTTTTGAAAAAAACAGAAATTTAAAAAATACCTCGGCGTGT
**
63594849 GACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-
191 GACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
** * * *
63594893 -AAAAACAGAAATTGAAAA-ATACCTCAACGTGTGACCCAAGGCTCAACTCACATCTCGCAATAT
1 AAAAAACAGAAATTGAAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
* * * * * *
63594956 GAGTTGATTTTTTGAAAAAAACATTAATTTGAAAAAAATACCTCAGCGTGTGACCTGAGGCTCAA
66 GAGTTGA-TTTTTG-AAAAAACA-GAAATTG--AAAAGTACCTCGGCATGTGTCC-GAGGCTCAA
* * ***
63595021 CTCACCTCTCGCAATATGAGTTGGTTTTTT--AAAAAA-A-AAATTTAAAAGATACCTCGATATG
125 CTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAAACAGAAATTTAAAAAATACCTCGGCGTG
* *
63595082 TGACCCGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTT--
190 TGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
* ** *
63595126 AAAAAACAGAAATTGAAAAG-TAGCTCGGCATGTG-TGCGAGGCTCAACTCACCTCTCACAATAT
1 AAAAAACAGAAATTGAAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
* * *
63595189 GAGTTGATTTTTTTGAAAAAAAATAGAAATTTAAAAGAAATACCTCGGCATGTGTCTGAGGCTCA
66 GAGTTGA--TTTTTG--AAAAAACAGAAATTGAAAAG---TACCTCGGCATGTGTCCGAGGCTCA
* *
63595254 ACTCACCTCTTGCAATATGAGTTGATTTTTTTTGAAAACAAAAACATAAATTTAAAAAATACCTC
124 ACTCACCTCTCGCAATATGAGTTGA--TTTTTTG--AA-AAAAACAGAAATTTAAAAAATACCTC
* **
63595319 AGCGTGTGACCTGAGGCTCAACTCACCTCTCAAAATATGAGTTGATTTTTG-
184 GGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
*
63595370 AAAAAACAGAAATTCAAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
1 AAAAAACAGAAATTGAAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
63595435 GAGTTGATTTTTGAAAAAAACAGAAATTGAAAAGTACCTCGGCATGTGTCCGAGGCTCAACTCAC
66 GAGTTGATTTTTG-AAAAAACAGAAATTGAAAAGTACCTCGGCATGTGTCCGAGGCTCAACTCAC
* * * *
63595500 CTTTCACAATATGAGTTGATTTTTTTGAAAAAAAACATAAATTTAAAAAATACCTCAGCGTGTGA
130 CTCTCGCAATATGAGTTGA-TTTTTTG-AAAAAAACAGAAATTTAAAAAATACCTCGGCGTGTGA
*
63595565 CCTGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGA
193 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
* * * * *
63595608 AAAAAACATAAATTTAAAAGATACCTCGGTATGTGACCCAAGGCTCAACTCATCTCTCGCAATAT
1 AAAAAACAGAAATTGAAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
*
63595673 GAGTTGA-TTTTG-AAAAGCAGAAATTGAAAAGTACCTCGGCATGTGTCCGAGGCTCAACTCACC
66 GAGTTGATTTTTGAAAAAACAGAAATTGAAAAGTACCTCGGCATGTGTCCGAGGCTCAACTCACC
* *
63595736 TCTCGCAATATGAGTTGATTTTTTGAAAAAAATAGAAATTTAAAAGAAATACCTCGGCATGTGAC
131 TCTCGCAATATGAGTTGATTTTTTGAAAAAAACAGAAATTT-AAA-AAATACCTCGGCGTGTGAC
* * * *
63595801 TTGAGGCTCAACTTACTTCTCGCATTATGAGTTGATTTTTGA
194 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
* * *
63595843 AAAAAATAGAAATTTAAAAGATACCTCGGTATGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
1 AAAAAACAGAAATTGAAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
*
63595908 GAGTTGATTTTTGAAAAAACGGAAATTGAAAAGTACCTCGGCATGTGTCCGAGGCTCAACTCACC
66 GAGTTGATTTTTGAAAAAACAGAAATTGAAAAGTACCTCGGCATGTGTCCGAGGCTCAACTCACC
* * *
63595973 TCTCGCAATATGAGTTGATTTTTTGAAAAAAATAGAAATTTAAAAGAAATACCTCGGCATGTG-T
131 TCTCGCAATATGAGTTGATTTTTTGAAAAAAACAGAAATTT-AAA-AAATACCTCGGCGTGTGAC
* *
63596037 CTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTTAA
194 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTGA
* * * *
63596082 AAAAAAAAGAAATTTAAAAGAAATACCTTGGCATGTG-TCCGAGGCTCAACTCACCTCTCGCAAT
1 AAAAAACAGAAATTGAAAAG--ATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAAT
* *
63596146 ATGAGTTGA--TTT-AAAAAA-AGAAATTGAAAA-TACCTCAGC--GTGACCCGAGGCTCAACTC
64 ATGAGTTGATTTTTGAAAAAACAGAAATTGAAAAGTACCTCGGCATGTG-TCCGAGGCTCAACTC
* *** *
63596204 ACCTCTCGCATTATGAGTTGATTTTTTTTGAAAAACAGAAA-TTAAAAAATACCTCGGCGTGTGG
128 ACCTCTCGCAATATGAGTTGATTTTTTGAAAAAAACAGAAATTTAAAAAATACCTCGGCGTGTGA
*
63596268 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
193 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
*
63596311 AAAAAACATAAATTGAAAA
1 AAAAAACAGAAATTGAAAA
63596330 ATATTTCTTG
Statistics
Matches: 1271, Mismatches: 120, Indels: 90
0.86 0.08 0.06
Matches are distributed among these distances:
226 5 0.00
227 7 0.01
228 42 0.03
229 28 0.02
231 23 0.02
232 44 0.03
233 53 0.04
234 191 0.15
235 241 0.19
236 84 0.07
237 197 0.15
238 73 0.06
239 33 0.03
240 82 0.06
241 18 0.01
242 1 0.00
243 78 0.06
244 25 0.02
245 13 0.01
246 33 0.03
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.28
Consensus pattern (235 bp):
AAAAAACAGAAATTGAAAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTGAAAAAACAGAAATTGAAAAGTACCTCGGCATGTGTCCGAGGCTCAACTCACC
TCTCGCAATATGAGTTGATTTTTTGAAAAAAACAGAAATTTAAAAAATACCTCGGCGTGTGACCT
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
Found at i:63596201 original size:70 final size:73
Alignment explanation
Indices: 63596120--63596316 Score: 256
Period size: 79 Copynumber: 2.6 Consensus size: 73
63596110 TGGCATGTGT
*
63596120 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT-AAAAAAAGAAATT-GAAAATACCTCA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTGAAAAAAAGAAATTAAAAAATACCTCA
63596183 GC-GTGAC
66 GCGGTGAC
* *
63596190 CCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTTGAAAAACAGAAATTAAAAAATA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-----TTTGAAAAAAAGAAATTAAAAAATA
* *
63596255 CCTCGGCGTGTGGC
61 CCTCAGCG-GTGAC
63596269 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTGAAAAAAA
63596317 CATAAATTGA
Statistics
Matches: 111, Mismatches: 7, Indels: 12
0.85 0.05 0.09
Matches are distributed among these distances:
70 34 0.31
75 3 0.03
76 24 0.22
77 12 0.11
79 38 0.34
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (73 bp):
CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTGAAAAAAAGAAATTAAAAAATACCTCA
GCGGTGAC
Found at i:63596330 original size:79 final size:79
Alignment explanation
Indices: 63594679--63596330 Score: 1752
Period size: 76 Copynumber: 21.1 Consensus size: 79
63594669 AAAAGAAATC
* * * * * *
63594679 AAAAATAGCC-CGGCATGCGACCCGAAGCTCAACTCACCTCTTG-AATTATGAGTTAATCTTCG-
1 AAAAATA-CCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAA-TATGAGTTGATTTTTGA
* *
63594741 -AAAAACAAAAATCG-
64 AAAAAACAGAAATTGA
* * * ***
63594755 -AAAATACCTTGGCATGTG-CCTGAGGCTCAACTCACAC-ATCGCAATATGAGTTGATTTTTTTG
1 AAAAATACCTCGGCATGTGACCCGAGGCTCAACTCAC-CTCTCGCAATATGAGTTGATTTTTGAA
*
63594817 AACAACAGAAATTG-
65 AAAAACAGAAATTGA
* ** * *
63594831 AAAAATACCTCAGTGTGCGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG--A
1 AAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
63594894 AAAACAGAAATTG-
66 AAAACAGAAATTGA
** * * *
63594907 AAAAATACCTCAACGTGTGACCCAAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTTGAA
1 AAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAA
* *
63594972 AAAAACATTAATTTGAA
65 AAAAACA-GAAATTG-A
* * * * *
63594989 AAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTT-TAA
1 AAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
*
63595053 AAAA-A-AAATTTA
66 AAAACAGAAATTGA
* ** *
63595065 AAAGATACCTCGATATGTGACCCGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTT--AA
1 AAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
63595128 AAAACAGAAATTG-
66 AAAACAGAAATTGA
* * ** *
63595141 AAAAGTAGCTCGGCATGTG-TGCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGA
1 AAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG-
* *
63595205 AAAAAAATAGAAATTTAA
63 AAAAAAACAGAAA-TTGA
* * *
63595223 AAGAAATACCTCGGCATGTG-TCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTT
1 AA-AAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTT
* *
63595287 GAAAACAAAAACATAAATTTA
62 G--AA-AAAAACAGAAATTGA
* * * **
63595308 AAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCAAAATATGAGTTGATTTTTG-AA
1 AAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
*
63595372 AAAACAGAAATTCA
66 AAAACAGAAATTGA
*
63595386 AAAGATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
1 AAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
63595451 AAAACAGAAATTG-
66 AAAACAGAAATTGA
* * * *
63595464 AAAAGTACCTCGGCATGTG-TCCGAGGCTCAACTCACCTTTCACAATATGAGTTGATTTTTTTGA
1 AAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG-
* *
63595528 AAAAAAACATAAATTTA
63 AAAAAAACAGAAATTGA
* * * *
63595545 AAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAA
1 AAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
* *
63595610 AAAACATAAATTTA
66 AAAACAGAAATTGA
* * * *
63595624 AAAGATACCTCGGTATGTGACCCAAGGCTCAACTCATCTCTCGCAATATGAGTTGA-TTTTG--A
1 AAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
*
63595686 AAAGCAGAAATTG-
66 AAAACAGAAATTGA
* *
63595699 AAAAGTACCTCGGCATGTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
1 AAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAA
* *
63595763 AAAAATAGAAATTTAA
65 AAAAACAGAAA-TTGA
** * * *
63595779 AAGAAATACCTCGGCATGTGACTTGAGGCTCAACTTACTTCTCGCATTATGAGTTGATTTTTGAA
1 AA-AAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
* *
63595844 AAAAATAGAAATTTA
65 AAAAACAGAAATTGA
* *
63595859 AAAGATACCTCGGTATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AA
1 AAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
*
63595923 AAAACGGAAATTG-
66 AAAACAGAAATTGA
* *
63595936 AAAAGTACCTCGGCATGTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
1 AAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAA
* *
63596000 AAAAATAGAAATTTAA
65 AAAAACAGAAA-TTGA
* * *
63596016 AAGAAATACCTCGGCATGTG-TCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTT
1 AA-AAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTT
* * *
63596080 AAAAAAAAAAGAAATTTAA
62 GAAAAAAACAGAAA-TTGA
* *
63596099 AAGAAATACCTTGGCATGTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTT--A
1 AA-AAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
63596159 AAAAA-AGAAATTG-
65 AAAAACAGAAATTGA
* * ***
63596172 -AAAATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTTG
1 AAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAA
63596234 AAAAACAGAAATT-A
65 AAAAACAGAAATTGA
* *
63596248 AAAAATACCTCGGCGTGTGGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
1 AAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
*
63596313 AAAACATAAATTGA
66 AAAACAGAAATTGA
63596327 AAAA
1 AAAA
63596331 TATTTCTTGA
Statistics
Matches: 1353, Mismatches: 162, Indels: 119
0.83 0.10 0.07
Matches are distributed among these distances:
69 3 0.00
70 34 0.03
71 10 0.01
72 1 0.00
73 3 0.00
74 66 0.05
75 80 0.06
76 209 0.15
77 101 0.07
78 178 0.13
79 194 0.14
80 51 0.04
81 108 0.08
82 120 0.09
83 123 0.09
84 23 0.02
85 40 0.03
86 9 0.01
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.28
Consensus pattern (79 bp):
AAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
AAAACAGAAATTGA
Found at i:63597200 original size:11 final size:11
Alignment explanation
Indices: 63597186--63597212 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
63597176 TGATTTTTTA
63597186 TTTTTTTTGTT
1 TTTTTTTTGTT
63597197 TTTTTTTTGTT
1 TTTTTTTTGTT
63597208 TTTTT
1 TTTTT
63597213 AGACATAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (11 bp):
TTTTTTTTGTT
Found at i:63603040 original size:50 final size:50
Alignment explanation
Indices: 63602925--63603168 Score: 353
Period size: 50 Copynumber: 4.9 Consensus size: 50
63602915 GATAATAACA
* ** *
63602925 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * *** *
63602976 TGCCCATGCCATGTCCCAAACATGGTCTTATGGGGGATCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
63603026 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
63603076 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
63603126 TGCCAATGCCAAGTCCCAGACATAGTCTTACATGGGACCTCTC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC
63603169 TACCCAAATG
Statistics
Matches: 173, Mismatches: 20, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
50 142 0.82
51 31 0.18
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:63603283 original size:13 final size:13
Alignment explanation
Indices: 63603262--63603291 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
63603252 GCTTGGATCA
63603262 TCATCAAATAAAT
1 TCATCAAATAAAT
*
63603275 TCATGAAATAAAT
1 TCATCAAATAAAT
63603288 TCAT
1 TCAT
63603292 AGTTGCTGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.13, G:0.03, T:0.33
Consensus pattern (13 bp):
TCATCAAATAAAT
Found at i:63605204 original size:4 final size:4
Alignment explanation
Indices: 63605195--63605243 Score: 98
Period size: 4 Copynumber: 12.2 Consensus size: 4
63605185 ATGTACATGC
63605195 AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG
1 AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG
63605243 A
1 A
63605244 CCAATGGATG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.24, T:0.24
Consensus pattern (4 bp):
AATG
Found at i:63606973 original size:71 final size:72
Alignment explanation
Indices: 63606895--63607060 Score: 230
Period size: 71 Copynumber: 2.3 Consensus size: 72
63606885 ACGATAATAA
* *
63606895 TTTTTGAAAACACGAAATTTATGAAACATGAGAA-TTTTTTGAAAACGCTAAAATTTTTGAAACA
1 TTTTTGAAAACACGAAATTT-TGAAACATGAGAATTTTTTTGAAAACACAAAAATTTTT-AAACA
63606959 TGA-AA-CT
64 TGAGAATCT
* *
63606966 TTTTTGAAAACGCGAAAATTTTTAAACATGAGAATTTTTTTGAAAACACAAAAATTTTTAAACAT
1 TTTTTGAAAACACG-AAATTTTGAAACATGAGAATTTTTTTGAAAACACAAAAATTTTTAAACAT
*
63607031 GAGAATTTT
65 GAGAA-TCT
63607040 TTTTTGAAAACACGAAATTTT
1 TTTTTGAAAACACGAAATTTT
63607061 TTTGACACGA
Statistics
Matches: 84, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
71 33 0.39
72 30 0.36
73 7 0.08
74 14 0.17
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.37
Consensus pattern (72 bp):
TTTTTGAAAACACGAAATTTTGAAACATGAGAATTTTTTTGAAAACACAAAAATTTTTAAACATG
AGAATCT
Found at i:63607001 original size:16 final size:16
Alignment explanation
Indices: 63606982--63607040 Score: 55
Period size: 16 Copynumber: 3.4 Consensus size: 16
63606972 AAAACGCGAA
63606982 AATTTTTAAACATGAG
1 AATTTTTAAACATGAG
** *
63606998 AATTTTTTTGAAAACACAAA
1 AA--TTTTT--AAACATGAG
63607018 AATTTTTAAACATGAG
1 AATTTTTAAACATGAG
63607034 AATTTTT
1 AATTTTT
63607041 TTTTGAAAAC
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
16 15 0.45
18 10 0.30
20 8 0.24
ACGTcount: A:0.44, C:0.07, G:0.08, T:0.41
Consensus pattern (16 bp):
AATTTTTAAACATGAG
Found at i:63607060 original size:18 final size:17
Alignment explanation
Indices: 63606878--63607117 Score: 114
Period size: 18 Copynumber: 13.1 Consensus size: 17
63606868 CGTGATCCGA
63606878 TTGAAACACGATAATAATTT
1 TTGAAACACGA-AAT--TTT
63606898 TTGAAAACACGAAA-TTT
1 TTG-AAACACGAAATTTT
* *
63606915 ATGAAACATGAGAATTTT
1 TTGAAACACGA-AATTTT
*
63606933 TTGAAA-ACGCTAAAATTT
1 TTGAAACACG--AAATTTT
*
63606951 TTGAAACATGAAACTTTT
1 TTGAAACACGAAA-TTTT
* *
63606969 TTGAAAACGCGAAAATTT
1 TTG-AAACACGAAATTTT
*
63606987 TT-AAACATGAGAATTTTT
1 TTGAAACACGA-AA-TTTT
* *
63607005 TTGAAAACACAAAAATTT
1 TTG-AAACACGAAATTTT
*
63607023 TT-AAACATGAGAATTTTTTT
1 TTGAAACACGA-AA---TTTT
63607043 TTGAAAACACGAAATTTTT
1 TTG-AAACACGAAA-TTTT
*
63607062 TTGACACGA-GAAAGTTTTTT
1 TTGAAAC-ACGAAA---TTTT
* *
63607082 TTAAAACACGAATTTTTT
1 TTGAAACACGAA-ATTTT
63607100 TTGAAACACG-AATTTT
1 TTGAAACACGAAATTTT
63607116 TT
1 TT
63607118 TATTTTTTAA
Statistics
Matches: 171, Mismatches: 26, Indels: 50
0.69 0.11 0.20
Matches are distributed among these distances:
16 25 0.15
17 17 0.10
18 60 0.35
19 23 0.13
20 29 0.17
21 10 0.06
22 7 0.04
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.38
Consensus pattern (17 bp):
TTGAAACACGAAATTTT
Found at i:63607091 original size:38 final size:36
Alignment explanation
Indices: 63606895--63607093 Score: 224
Period size: 36 Copynumber: 5.4 Consensus size: 36
63606885 ACGATAATAA
*
63606895 TTTTTGAAAACACG-AAATTTATGAAACATGAGAA-T
1 TTTTTGAAAACACGAAAATTT-TTAAACATGAGAATT
* * *
63606930 TTTTTGAAAACGCTAAAATTTTTGAAACATGA-AACT
1 TTTTTGAAAACACGAAAATTTTT-AAACATGAGAATT
*
63606966 TTTTTGAAAACGCGAAAATTTTTAAACATGAGAATT
1 TTTTTGAAAACACGAAAATTTTTAAACATGAGAATT
*
63607002 TTTTTGAAAACACAAAAATTTTTAAACATGAGAATTTT
1 TTTTTGAAAACACGAAAATTTTTAAACATGAGAA--TT
* ** *
63607040 TTTTTGAAAACACGAAATTTTTTTGACACGAGAAAGTT
1 TTTTTGAAAACACGAAAATTTTTAAACATGAG-AA-TT
*
63607078 TTTTTTAAAACACGAA
1 TTTTTGAAAACACGAA
63607094 TTTTTTTTGA
Statistics
Matches: 143, Mismatches: 14, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
35 23 0.16
36 72 0.50
38 46 0.32
39 2 0.01
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.36
Consensus pattern (36 bp):
TTTTTGAAAACACGAAAATTTTTAAACATGAGAATT
Found at i:63607118 original size:38 final size:38
Alignment explanation
Indices: 63606895--63607118 Score: 138
Period size: 36 Copynumber: 6.1 Consensus size: 38
63606885 ACGATAATAA
*
63606895 TTTTTGAAAACACGAAA--TTTATGAAACATGAGAA---T
1 TTTTTGAAAACACGAAATTTTTTTGAAAC--GAGAATTTT
* * * **
63606930 TTTTTGAAAACGCTAAA-ATTTTTGAAAC-ATGAA-ACT
1 TTTTTGAAAACACGAAATTTTTTTGAAACGA-GAATTTT
* *
63606966 TTTTTGAAAACGCGAAA-ATTTTT-AAACATGAGAA--TT
1 TTTTTGAAAACACGAAATTTTTTTGAAAC--GAGAATTTT
**
63607002 TTTTTGAAAACAC-AAAAATTTTT-AAACATGAGAATTTT
1 TTTTTGAAAACACGAAATTTTTTTGAAAC--GAGAATTTT
* *
63607040 TTTTTGAAAACACGAAATTTTTTTGACACGAGAAAGTTT
1 TTTTTGAAAACACGAAATTTTTTTGAAACGAG-AATTTT
*
63607079 TTTTT-AAAACACGAATTTTTTTTGAAAC-ACGAATTTT
1 TTTTTGAAAACACGAAATTTTTTTGAAACGA-GAATTTT
63607116 TTT
1 TTT
63607119 ATTTTTTAAG
Statistics
Matches: 162, Mismatches: 13, Indels: 26
0.81 0.06 0.13
Matches are distributed among these distances:
33 1 0.01
34 3 0.02
35 22 0.14
36 62 0.38
37 12 0.07
38 41 0.25
39 18 0.11
40 3 0.02
ACGTcount: A:0.40, C:0.09, G:0.12, T:0.39
Consensus pattern (38 bp):
TTTTTGAAAACACGAAATTTTTTTGAAACGAGAATTTT
Found at i:63607604 original size:7 final size:7
Alignment explanation
Indices: 63607594--63607633 Score: 50
Period size: 7 Copynumber: 6.1 Consensus size: 7
63607584 TTTTTTTGTT
63607594 TTTTTTC
1 TTTTTTC
*
63607601 TTTTCTC
1 TTTTTTC
63607608 TTTTTTC
1 TTTTTTC
63607615 -TTTTTC
1 TTTTTTC
63607621 --TTTTC
1 TTTTTTC
63607626 TTTTTTC
1 TTTTTTC
63607633 T
1 T
63607634 CCTTTTTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
5 5 0.17
6 6 0.21
7 18 0.62
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTTTC
Found at i:63607611 original size:14 final size:14
Alignment explanation
Indices: 63607594--63607641 Score: 64
Period size: 14 Copynumber: 3.4 Consensus size: 14
63607584 TTTTTTTGTT
63607594 TTTTTTCTTTTCTC
1 TTTTTTCTTTTCTC
63607608 TTTTTTCTTTT-TC
1 TTTTTTCTTTTCTC
63607621 TTTTCTT-TTTTCTCC
1 TTTT-TTCTTTTCT-C
63607636 TTTTTT
1 TTTTTT
63607642 TCTGCAGATT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
13 10 0.32
14 16 0.52
15 5 0.16
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTTTTCTTTTCTC
Found at i:63607620 original size:20 final size:19
Alignment explanation
Indices: 63607583--63607631 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 19
63607573 CTATTCAGGC
*
63607583 CTTTT-TTTGTTT-TTTTT
1 CTTTTCTTTTTTTCTTTTT
63607600 CTTTTCTCTTTTTTCTTTTT
1 CTTTTCT-TTTTTTCTTTTT
63607620 CTTTTCTTTTTT
1 CTTTTCTTTTTT
63607632 CTCCTTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 5 0.18
18 1 0.04
19 10 0.36
20 12 0.43
ACGTcount: A:0.00, C:0.14, G:0.02, T:0.84
Consensus pattern (19 bp):
CTTTTCTTTTTTTCTTTTT
Found at i:63607624 original size:25 final size:24
Alignment explanation
Indices: 63607583--63607629 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 24
63607573 CTATTCAGGC
63607583 CTTTTTTTGTTTTTTTTCTTTTCT
1 CTTTTTTTGTTTTTTTTCTTTTCT
63607607 CTTTTTTCT-TTTTCTTTTCTTTT
1 CTTTTTT-TGTTTT-TTTTCTTTT
63607630 TTCTCCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.00, C:0.15, G:0.02, T:0.83
Consensus pattern (24 bp):
CTTTTTTTGTTTTTTTTCTTTTCT
Found at i:63607639 original size:20 final size:20
Alignment explanation
Indices: 63607596--63607639 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
63607586 TTTTTGTTTT
*
63607596 TTTTCTTTTCTCTTTTTTCT
1 TTTTCTTTTCTCTTTTTTCC
63607616 TTTTCTTTTCT-TTTTTCTCC
1 TTTTCTTTTCTCTTTTT-TCC
63607636 TTTT
1 TTTT
63607640 TTTCTGCAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (20 bp):
TTTTCTTTTCTCTTTTTTCC
Found at i:63607967 original size:13 final size:13
Alignment explanation
Indices: 63607949--63607988 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
63607939 TATATTTTTT
63607949 TCTATTTTTCTTC
1 TCTATTTTTCTTC
63607962 TCTATTTTTCTTC
1 TCTATTTTTCTTC
* *
63607975 TTTCTTTTTCTTC
1 TCTATTTTTCTTC
63607988 T
1 T
63607989 TCTTCTTTCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.05, C:0.23, G:0.00, T:0.72
Consensus pattern (13 bp):
TCTATTTTTCTTC
Found at i:63607988 original size:16 final size:15
Alignment explanation
Indices: 63607947--63607996 Score: 52
Period size: 13 Copynumber: 3.5 Consensus size: 15
63607937 GATATATTTT
*
63607947 TTTCTATTTTTCTTC
1 TTTCTTTTTTTCTTC
*
63607962 --TCTATTTTTCTTC
1 TTTCTTTTTTTCTTC
63607975 TTTCTTTTTCTTCTTC
1 TTTCTTTTT-TTCTTC
63607991 -TTCTTT
1 TTTCTTT
63607997 CGGGCCGAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
13 13 0.42
15 12 0.39
16 6 0.19
ACGTcount: A:0.04, C:0.22, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTCTTTTTTTCTTC
Found at i:63607997 original size:13 final size:12
Alignment explanation
Indices: 63607953--63607997 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 12
63607943 TTTTTTTCTA
*
63607953 TTTTTCTTCTCTA
1 TTTTTCTTCT-TC
63607966 TTTTTCTTCTTTC
1 TTTTTCTTC-TTC
63607979 TTTTTCTTCTTC
1 TTTTTCTTCTTC
63607991 TTCTTTC
1 TT-TTTC
63607998 GGGCCGAACC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
12 5 0.17
13 23 0.79
14 1 0.03
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.73
Consensus pattern (12 bp):
TTTTTCTTCTTC
Found at i:63608122 original size:14 final size:15
Alignment explanation
Indices: 63608087--63608135 Score: 52
Period size: 13 Copynumber: 3.5 Consensus size: 15
63608077 CTTCTTCTTC
63608087 TTCTTCTTTCT--TAT
1 TTCTTCTTTCTCCT-T
63608101 TT-TTCTTTC-CCTT
1 TTCTTCTTTCTCCTT
*
63608114 TTCTTCTTTCTCTTT
1 TTCTTCTTTCTCCTT
63608129 TTCTTCT
1 TTCTTCT
63608136 CTTTGCTTGC
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
13 10 0.33
14 10 0.33
15 10 0.33
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.71
Consensus pattern (15 bp):
TTCTTCTTTCTCCTT
Found at i:63608666 original size:30 final size:30
Alignment explanation
Indices: 63608523--63608682 Score: 116
Period size: 29 Copynumber: 5.5 Consensus size: 30
63608513 TTTTAAGGTA
* * *
63608523 AAAATGTAATTTTAGGAAAA-TATA-GGGCT
1 AAAATGTAATTTT-TGAAAAGTTTAGGGGCC
* *
63608552 AAAATGTAATTTTTG-AAAGTTTAAGAGCC
1 AAAATGTAATTTTTGAAAAGTTTAGGGGCC
* ** *
63608581 CAAATGTAA-TTTACAAAA-TATTAGGGGTC
1 AAAATGTAATTTTTGAAAAGT-TTAGGGGCC
** * * * *
63608610 AAGGTGAAAATTTAGAAAAG-TTAGGGGAC
1 AAAATGTAATTTTTGAAAAGTTTAGGGGCC
63608639 AAAATGTAATTTTTGAAAAGTTTAGGGGCC
1 AAAATGTAATTTTTGAAAAGTTTAGGGGCC
*
63608669 AATATGTAATTTTT
1 AAAATGTAATTTTT
63608683 TAATTTTGTA
Statistics
Matches: 101, Mismatches: 23, Indels: 13
0.74 0.17 0.09
Matches are distributed among these distances:
27 3 0.03
28 8 0.08
29 61 0.60
30 29 0.29
ACGTcount: A:0.41, C:0.06, G:0.21, T:0.33
Consensus pattern (30 bp):
AAAATGTAATTTTTGAAAAGTTTAGGGGCC
Found at i:63609875 original size:27 final size:27
Alignment explanation
Indices: 63609837--63610333 Score: 397
Period size: 27 Copynumber: 17.7 Consensus size: 27
63609827 TCTCGAAATA
*
63609837 CCCCTGTAGGGTAAAATGATCGTAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
63609864 CCCCTGTAGGGTAAAATGACCGTAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
* *
63609891 CCCTTATAGGGTAAAATGACCGTAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
*
63609918 CCCTTGTAGGGTAAAATGACCGTAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
*
63609945 -CCCTGTAGGGTAAAATAACCGTAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
* * ** *
63609971 CCACTGTAGGATAAAATAATTGTAATTGTAACG
1 CCCCTGTAGGGT--AA-AA-TG--ACCGTAATG
* * **
63610004 CCCCTATAAGGTAAAATGATTGTAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
* *
63610031 CCCATGTAGGGTAAAATGATCGTAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
* *
63610058 CCTCTGTAGGGTAAAATGACCATAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
* * *
63610085 --CCTATAGGGTAAAATAATCGTAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
*
63610110 CCCCTGTAGGGTAAAATGACCATAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
* * * *
63610137 ACCAAAATGCCCTTGTAAGATAAAATAATCGTAATG
1 --C------CCC-TGTAGGGTAAAATGACCGTAATG
* * * * *
63610173 CCCCTATAAGGTAAAATAATCGTAACG
1 CCCCTGTAGGGTAAAATGACCGTAATG
*
63610200 CCCCTGTAGGTTAAAATAACCGTGACCGTAATG
1 CCCCTGTAGGGT--AA-AA---TGACCGTAATG
* * **
63610233 CCCTTGTAGGGTAAAATAACTTTAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
* * *
63610260 CCCATGTAAGGTAAAATGACCGTAACG
1 CCCCTGTAGGGTAAAATGACCGTAATG
*
63610287 CCCCTGTAGGGTAAAATGACAGTAATG
1 CCCCTGTAGGGTAAAATGACCGTAATG
* * *
63610314 CCTCTGTACGGTACAATGAC
1 CCCCTGTAGGGTAAAATGAC
63610334 TATTTTGCCC
Statistics
Matches: 380, Mismatches: 66, Indels: 48
0.77 0.13 0.10
Matches are distributed among these distances:
25 20 0.05
26 24 0.06
27 259 0.68
28 3 0.01
29 7 0.02
30 8 0.02
31 5 0.01
33 32 0.08
34 1 0.00
35 3 0.01
36 18 0.05
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
CCCCTGTAGGGTAAAATGACCGTAATG
Found at i:63610261 original size:229 final size:228
Alignment explanation
Indices: 63609837--63610316 Score: 552
Period size: 229 Copynumber: 2.1 Consensus size: 228
63609827 TCTCGAAATA
* * * * *
63609837 CCCCTGTAGGGTAAAATGATC-GTAATGCCCCTGTAGGGTAAAATGACCGTAATGCCCTTATAGG
1 CCCCTGTAGGGTAAAATGA-CAGTAATG--CCTATAGGGTAAAATAATCGTAATGCCCCTGTAGG
* * * * * *
63609901 GTAAAATGACC-----G----TAATGCCCTTGTAGGGTAAAATGACCGTAATGCCCTGTAGGGTA
63 GTAAAATGACCATAATGACCAAAATGCCCTTGTAAGATAAAATAACCGTAATGCCCTATAAGGTA
* ** ** *
63609957 AAATAACCGTAATGCCACTGTAGGATAAAATAATTGTAATTGTAACGCCCCTATAAGGTAAAATG
128 AAATAACCGTAACGCCACTGTAGGATAAAATAACCGTAACCGTAACGCCCCTATAAGGTAAAATA
* * *
63610022 ATTGTAATGCCCATGTAGGGTAAAATGATCGTAATG
193 ATTGTAATGCCCATGTAAGGTAAAATGACCGTAACG
*
63610058 CCTCTGTAGGGTAAAATGACCA-TAATGCCTATAGGGTAAAATAATCGTAATGCCCCTGTAGGGT
1 CCCCTGTAGGGTAAAATGA-CAGTAATGCCTATAGGGTAAAATAATCGTAATGCCCCTGTAGGGT
*
63610122 AAAATGACCATAATGACCAAAATGCCCTTGTAAGATAAAATAATCGTAATGCCCCTATAAGGTAA
65 AAAATGACCATAATGACCAAAATGCCCTTGTAAGATAAAATAACCGTAATG-CCCTATAAGGTAA
* * * * * * * *
63610187 AATAATCGTAACGCCCCTGTAGGTTAAAATAACCGTGACCGTAATGCCCTTGTAGGGTAAAATAA
129 AATAACCGTAACGCCACTGTAGGATAAAATAACCGTAACCGTAACGCCCCTATAAGGTAAAATAA
63610252 CTT-TAATGCCCATGTAAGGTAAAATGACCGTAACG
194 -TTGTAATGCCCATGTAAGGTAAAATGACCGTAACG
63610287 CCCCTGTAGGGTAAAATGACAGTAATGCCT
1 CCCCTGTAGGGTAAAATGACAGTAATGCCT
63610317 CTGTACGGTA
Statistics
Matches: 214, Mismatches: 32, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
219 41 0.19
221 24 0.11
224 1 0.00
228 29 0.14
229 117 0.55
230 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (228 bp):
CCCCTGTAGGGTAAAATGACAGTAATGCCTATAGGGTAAAATAATCGTAATGCCCCTGTAGGGTA
AAATGACCATAATGACCAAAATGCCCTTGTAAGATAAAATAACCGTAATGCCCTATAAGGTAAAA
TAACCGTAACGCCACTGTAGGATAAAATAACCGTAACCGTAACGCCCCTATAAGGTAAAATAATT
GTAATGCCCATGTAAGGTAAAATGACCGTAACG
Found at i:63610270 original size:87 final size:87
Alignment explanation
Indices: 63610045--63610303 Score: 283
Period size: 87 Copynumber: 3.0 Consensus size: 87
63610035 TGTAGGGTAA
* * * *
63610045 AATGATCGTAATG-CCTCTGTAGGGTAAAATGACCATAATG-CCTATAGGGTAAAATAATCGTAA
1 AATGACCGTAATGCCCT-TGTAGGGTAAAATAACTATAATGCCCTATAAGGTAAAATAATCGTAA
* *
63610108 TGCCCCTGTAGGGTAAAATGACC
65 CGCCCCTGTAGGGTAAAATAACC
** * * *
63610131 ATAATGACCAAAATGCCCTTGTAAGATAAAATAA-TCGTAATGCCCCTATAAGGTAAAATAATCG
1 --AATGACCGTAATGCCCTTGTAGGGTAAAATAACT-ATAATG-CCCTATAAGGTAAAATAATCG
*
63610195 TAACGCCCCTGTAGGTTAAAATAACC
62 TAACGCCCCTGTAGGGTAAAATAACC
* * * * *
63610221 -GTGACCGTAATGCCCTTGTAGGGTAAAATAACTTTAATGCCCATGTAAGGTAAAATGACCGTAA
1 AATGACCGTAATGCCCTTGTAGGGTAAAATAACTATAATGCCC-TATAAGGTAAAATAATCGTAA
63610285 CGCCCCTGTAGGGTAAAAT
65 CGCCCCTGTAGGGTAAAAT
63610304 GACAGTAATG
Statistics
Matches: 143, Mismatches: 22, Indels: 13
0.80 0.12 0.07
Matches are distributed among these distances:
86 3 0.02
87 67 0.47
88 28 0.20
89 3 0.02
90 42 0.29
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (87 bp):
AATGACCGTAATGCCCTTGTAGGGTAAAATAACTATAATGCCCTATAAGGTAAAATAATCGTAAC
GCCCCTGTAGGGTAAAATAACC
Found at i:63610275 original size:60 final size:60
Alignment explanation
Indices: 63610166--63610282 Score: 139
Period size: 60 Copynumber: 1.9 Consensus size: 60
63610156 ATAAAATAAT
*
63610166 CGTAATGCCCCTATAAGGTAAAATAATCGTAACGCCCCTGTAGGTTAAAATAACCGTGAC
1 CGTAATGCCCCTATAAGGTAAAATAATCGTAACGCCCATGTAGGTTAAAATAACCGTGAC
* * * * * *
63610226 CGTAATGCCCTTGTAGGGTAAAATAA-CTTTAATGCCCATGTAAGG-TAAAATGACCGT
1 CGTAATGCCCCTATAAGGTAAAATAATC-GTAACGCCCATGT-AGGTTAAAATAACCGT
63610283 AACGCCCCTG
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
59 1 0.02
60 44 0.92
61 3 0.06
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.26
Consensus pattern (60 bp):
CGTAATGCCCCTATAAGGTAAAATAATCGTAACGCCCATGTAGGTTAAAATAACCGTGAC
Found at i:63610387 original size:24 final size:24
Alignment explanation
Indices: 63610351--63610484 Score: 155
Period size: 24 Copynumber: 5.6 Consensus size: 24
63610341 CCCTTCGGGG
*
63610351 TTAAATGATTGATTTG-CATGTGAT
1 TTAAATGACTGATTTGTC-TGTGAT
*
63610375 GTAAATGACTGATTTGTCTGAT-AT
1 TTAAATGACTGATTTGTCTG-TGAT
* * *
63610399 GTAAATGACTGATTTATTTGTGAT
1 TTAAATGACTGATTTGTCTGTGAT
* *
63610423 TTAAATGACCGGTTTGTCTGTGAT
1 TTAAATGACTGATTTGTCTGTGAT
63610447 TTAAATGACTGATTTGTCTGTGAT
1 TTAAATGACTGATTTGTCTGTGAT
**
63610471 TTGTATGACTGATT
1 TTAAATGACTGATT
63610485 CCGTGCATGG
Statistics
Matches: 94, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
23 1 0.01
24 91 0.97
25 2 0.02
ACGTcount: A:0.26, C:0.07, G:0.22, T:0.45
Consensus pattern (24 bp):
TTAAATGACTGATTTGTCTGTGAT
Found at i:63610638 original size:26 final size:26
Alignment explanation
Indices: 63610604--63610653 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
63610594 CCACATATAC
63610604 TGTTACTGGAAACTTTGCTGCGATAT
1 TGTTACTGGAAACTTTGCTGCGATAT
* * *
63610630 TGTTGCTGGCAGCTTTGCTGCGAT
1 TGTTACTGGAAACTTTGCTGCGAT
63610654 GCTATTGATG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.16, C:0.18, G:0.28, T:0.38
Consensus pattern (26 bp):
TGTTACTGGAAACTTTGCTGCGATAT
Found at i:63610665 original size:26 final size:26
Alignment explanation
Indices: 63610616--63610665 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
63610606 TTACTGGAAA
* * *
63610616 CTTTGCTGCGATATTGTTGCTGGCAG
1 CTTTGCTGCGATACTATTGATGGCAG
*
63610642 CTTTGCTGCGATGCTATTGATGGC
1 CTTTGCTGCGATACTATTGATGGC
63610666 TTTATACCGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.12, C:0.20, G:0.30, T:0.38
Consensus pattern (26 bp):
CTTTGCTGCGATACTATTGATGGCAG
Found at i:63610760 original size:64 final size:64
Alignment explanation
Indices: 63610659--63610876 Score: 303
Period size: 64 Copynumber: 3.4 Consensus size: 64
63610649 GCGATGCTAT
* * * *
63610659 TGATGGCTTTATACCGATCATATTACCATTACTGATGGCTGTGTGCCGATTATATTACCATTAC
1 TGATGGCTTTGTGCCGATCATATTACCATTACTGATGGCTGTGTGCCGATTATATTACTACTAC
* * *
63610723 TGATGG-TTGTGTGCCGATCATATTACCATTACCGATGGCTTTGTGCCGATCATATTACTACTAC
1 TGATGGCTT-TGTGCCGATCATATTACCATTACTGATGGCTGTGTGCCGATTATATTACTACTAC
* * * *
63610787 TGATGGCTTTGTGCCGATCACACTACTATTATTGATGGCTGTGTGCCGATTATATTACTACTAC
1 TGATGGCTTTGTGCCGATCATATTACCATTACTGATGGCTGTGTGCCGATTATATTACTACTAC
* *
63610851 TAATGGCTTTGTGCCAATCATATTAC
1 TGATGGCTTTGTGCCGATCATATTAC
63610877 TGTACTTATG
Statistics
Matches: 134, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
63 2 0.01
64 130 0.97
65 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (64 bp):
TGATGGCTTTGTGCCGATCATATTACCATTACTGATGGCTGTGTGCCGATTATATTACTACTAC
Found at i:63610877 original size:32 final size:32
Alignment explanation
Indices: 63610659--63610890 Score: 270
Period size: 32 Copynumber: 7.3 Consensus size: 32
63610649 GCGATGCTAT
* * *
63610659 TGATGGCTTTATACCGATCATATTACCATTAC
1 TGATGGCTTTGTGCCGATCATATTACTATTAC
* * *
63610691 TGATGGCTGTGTGCCGATTATATTACCATTAC
1 TGATGGCTTTGTGCCGATCATATTACTATTAC
*
63610723 TGATGG-TTGTGTGCCGATCATATTACCATTAC
1 TGATGGCTT-TGTGCCGATCATATTACTATTAC
* *
63610755 CGATGGCTTTGTGCCGATCATATTACTACTAC
1 TGATGGCTTTGTGCCGATCATATTACTATTAC
* * *
63610787 TGATGGCTTTGTGCCGATCACACTACTATTAT
1 TGATGGCTTTGTGCCGATCATATTACTATTAC
* * *
63610819 TGATGGCTGTGTGCCGATTATATTACTACTAC
1 TGATGGCTTTGTGCCGATCATATTACTATTAC
* * *
63610851 TAATGGCTTTGTGCCAATCATATTACT-GTAC
1 TGATGGCTTTGTGCCGATCATATTACTATTAC
*
63610882 TTATGGCTT
1 TGATGGCTT
63610891 GTAGTCATTC
Statistics
Matches: 172, Mismatches: 26, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
31 12 0.07
32 158 0.92
33 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (32 bp):
TGATGGCTTTGTGCCGATCATATTACTATTAC
Found at i:63613711 original size:27 final size:27
Alignment explanation
Indices: 63613681--63614023 Score: 312
Period size: 27 Copynumber: 12.7 Consensus size: 27
63613671 TATCTTATAG
* * *
63613681 GGGTATTTTGGTCATTTTACCCTTCAA
1 GGGTATTTCGGTTATTTTACCCTTCGA
*** * *
63613708 GGGTATTTTAATAATTTTACCCTTCAA
1 GGGTATTTCGGTTATTTTACCCTTCGA
** *
63613735 GGGTATTTTAGTTATTTTACCTTTCGA
1 GGGTATTTCGGTTATTTTACCCTTCGA
*
63613762 GGGTAATTT-GGTTATTTTACCTTTCGA
1 GGGT-ATTTCGGTTATTTTACCCTTCGA
* ** * *
63613789 GGGTAATTCAATTATTTTACCCTTTGG
1 GGGTATTTCGGTTATTTTACCCTTCGA
* * *
63613816 GGGTAATCCGGTCATTTTACCCTTCGA
1 GGGTATTTCGGTTATTTTACCCTTCGA
* * *
63613843 GGGTATTTCGATAATCTTACCCTTCGA
1 GGGTATTTCGGTTATTTTACCCTTCGA
* * **
63613870 AGGTATTTCAGACATTTTACCCATT-GA
1 GGGTATTTCGGTTATTTTACCC-TTCGA
* *
63613897 AGGTATTTCGGTTATTTTACCATTCGA
1 GGGTATTTCGGTTATTTTACCCTTCGA
* *
63613924 GGGTATTTCAGTTATTTTACCCTTCAA
1 GGGTATTTCGGTTATTTTACCCTTCGA
* *
63613951 AGGTATTTCGGTCATTTTACCCTTCGA
1 GGGTATTTCGGTTATTTTACCCTTCGA
* * *
63613978 GGGTATTTCAGTTATTTTACCTTTTGA
1 GGGTATTTCGGTTATTTTACCCTTCGA
* *
63614005 GGGTATTTCGATCATTTTA
1 GGGTATTTCGGTTATTTTA
63614024 ACAACCTTTT
Statistics
Matches: 261, Mismatches: 51, Indels: 8
0.82 0.16 0.03
Matches are distributed among these distances:
26 5 0.02
27 250 0.96
28 6 0.02
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.44
Consensus pattern (27 bp):
GGGTATTTCGGTTATTTTACCCTTCGA
Found at i:63615548 original size:25 final size:25
Alignment explanation
Indices: 63615512--63615560 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
63615502 GAACCTCTGA
*
63615512 CCTCCTTACCACACCTGTGACGCCG
1 CCTCCTTACCACACATGTGACGCCG
* *
63615537 CCTCCTTGCCACACATGTGTCGCC
1 CCTCCTTACCACACATGTGACGCC
63615561 ATCTTGCCAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.14, C:0.47, G:0.16, T:0.22
Consensus pattern (25 bp):
CCTCCTTACCACACATGTGACGCCG
Found at i:63617446 original size:27 final size:25
Alignment explanation
Indices: 63617358--63617448 Score: 67
Period size: 27 Copynumber: 3.4 Consensus size: 25
63617348 GGGGTAAACT
* *
63617358 AGTCATTTTATCCTATAGGGGTATTTT
1 AGTCATTTTA-CCTTTA-GGGTATTTC
* *
63617385 GGTCATTTTACATTTCTAGGGTATTTC
1 AGTCATTTTAC-CTT-TAGGGTATTTC
*
63617412 -GATAATTTTACCCTTTGAGGGTATTTC
1 AG-TCATTTTA-CCTTT-AGGGTATTTC
63617439 AGTCATTTTA
1 AGTCATTTTA
63617449 ACAACCTTTT
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
26 3 0.06
27 44 0.86
28 4 0.08
ACGTcount: A:0.22, C:0.13, G:0.18, T:0.47
Consensus pattern (25 bp):
AGTCATTTTACCTTTAGGGTATTTC
Found at i:63629586 original size:2 final size:2
Alignment explanation
Indices: 63629579--63629641 Score: 126
Period size: 2 Copynumber: 31.5 Consensus size: 2
63629569 TTAGAGATGA
63629579 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
63629621 TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC T
63629642 TTTCTATTTT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:63631099 original size:14 final size:14
Alignment explanation
Indices: 63631080--63631113 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
63631070 CATTATAGTG
63631080 ACCATGAAAGCAGT
1 ACCATGAAAGCAGT
63631094 ACCATGAAAGCAGT
1 ACCATGAAAGCAGT
63631108 ACCATG
1 ACCATG
63631114 TGGAATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.41, C:0.24, G:0.21, T:0.15
Consensus pattern (14 bp):
ACCATGAAAGCAGT
Found at i:63634724 original size:132 final size:131
Alignment explanation
Indices: 63634532--63635083 Score: 714
Period size: 132 Copynumber: 4.2 Consensus size: 131
63634522 CTGTTTTTCA
* * * * * * *
63634532 ATCCACTTCCTACCAATATAGGAAGGCAGGATCTGCTATCTTCGATCTATTTCACACCAATATAT
1 ATCCACTTCCTACCAATATAGGAAGACCGGACCTGTTATCTTCGATCTACTTCACGCCAATACAT
* * * * * *
63634597 GAATACGAGATCTACTTTCTTCGATCTACTTCACCACTAGTATGGGAAGACAAGATCTGCATCTT
66 GAAGACAAGATCTACTTTCTTCGATCTACTTC-CCACCAATATAGGAAGACAAGATCTGCATCGT
*
63634662 GG
130 CG
* * **
63634664 ATCCACTTCCTATCAATATAGGAATATGGGACCTGTTATCTTCGATCTACTTCACGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGACCGGACCTGTTATCTTCGATCTACTTCACGCCAATACAT
* *
63634729 GAAGACAAGATCTGCTTTCTGT-GATCTACTTCCTACCAATATAGGAAGACAAGATCTGCATCGT
66 GAAGACAAGATCTACTTTCT-TCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGCATCGT
63634793 CG
130 CG
* *
63634795 ATCCACTTTCTACCAATATAGGAAGACCGGACCTGTTATCTTTGATCTACTTCACGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGACCGGACCTGTTATCTTCGATCTACTTCACGCCAATACAT
* * * *
63634860 GAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGCATCGT
66 GAAGACAAGATCTACTTTCTTCGATCTACTTC-CCACCAATATAGGAAGACAAGATCTGCATCGT
63634925 CG
130 CG
* * *
63634927 ATCCATTTCCTACCAATATAGGAAGACCGAACCTGTTATCTTTGATCTACTTCACGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGACCGGACCTGTTATCTTCGATCTACTTCACGCCAATACAT
* * * *
63634992 GAAGACAAGATCTACTTTCTTCGGTCTACTTCCTACCAATATAGGAAGA-TAGAATCTGCATCTT
66 GAAGACAAGATCTACTTTCTTCGATCTACTTCCCACCAATATAGGAAGACAAG-ATCTGCATCGT
63635056 CG
130 CG
* * *
63635058 ATCTACTTCAC-GCCAATATATGAAGA
1 ATCCACTTC-CTACCAATATAGGAAGA
63635084 TAAGATCTGC
Statistics
Matches: 371, Mismatches: 44, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
130 3 0.01
131 162 0.44
132 205 0.55
133 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (131 bp):
ATCCACTTCCTACCAATATAGGAAGACCGGACCTGTTATCTTCGATCTACTTCACGCCAATACAT
GAAGACAAGATCTACTTTCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTGCATCGTC
G
Found at i:63634975 original size:219 final size:218
Alignment explanation
Indices: 63634740--63635285 Score: 686
Period size: 219 Copynumber: 2.5 Consensus size: 218
63634730 AAGACAAGAT
* * * * *
63634740 CTGCTTTCTGTGATCTACTTC-CTACCAATATAGGAAGACAAGATCTGC-ATCGTCGATCCACTT
1 CTGCTATCTTTGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTATCGTCGATCCACTT
* * * * *
63634803 TCTACCAATATAGGAAGACCGGACCTGTTATCTTTGATCTACTTCACGCCAATACATGAAGACAA
65 CCTACCAATATAGGAAGACAGAACCTG-CATCTTCGATCTACTTCACGCCAATACATGAAGACAA
*
63634868 GATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGCATCGTCGATCCAT
129 GATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGCATCGTCGATCCAC
* *
63634933 TTCCTACCAATATAGGAAGACCGAAC
194 TTCC-ACCAATATAGAAAGACAGAAC
* * * * * *
63634959 CTGTTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGGTCTACTTC
1 CTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCGTCGATCCACTTC
* * * *
63635024 CTACCAATATAGGAAGATAGAATCTGCATCTTCGATCTACTTCACGCCAATATATGAAGATAAGA
66 CTACCAATATAGGAAGACAGAACCTGCATCTTCGATCTACTTCACGCCAATACATGAAGACAAGA
* * *
63635089 TCTGCTTTCTTCGATTTGCTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTGGATCCACTT
131 TCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGCATCGTCGATCCACTT
* * *
63635154 CCATCAATATAGAAAGATAGGAC
196 CCACCAATATAGAAAGACAGAAC
* * *
63635177 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTC-TGCGATCTACTT
1 CTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCGT-CGATCCACTT
* * * *
63635241 CGCCACCAATATGGGAAGACA-AGATCTGCATCTTGGATCTACTTC
65 C-CTACCAATATAGGAAGACAGA-ACCTGCATCTTCGATCTACTTC
63635286 CTATCAATAT
Statistics
Matches: 285, Mismatches: 37, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
217 1 0.00
218 76 0.27
219 174 0.61
220 34 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (218 bp):
CTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCGTCGATCCACTTC
CTACCAATATAGGAAGACAGAACCTGCATCTTCGATCTACTTCACGCCAATACATGAAGACAAGA
TCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGCATCGTCGATCCACTT
CCACCAATATAGAAAGACAGAAC
Found at i:63634999 original size:263 final size:263
Alignment explanation
Indices: 63634532--63635383 Score: 781
Period size: 263 Copynumber: 3.2 Consensus size: 263
63634522 CTGTTTTTCA
* * * *
63634532 ATCCACTTCCTACCAATATAGGAAGGCAGGATCTGCTATCTTCGATCTATTTCACACCAATATAT
1 ATCCACTTCCTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACACCAATACAT
* * * *
63634597 GAATACGAGATCTACTTTCTTCGATCTACTTCACCACTAGTATGGGAAGACAAGATCTGCATCTT
66 GAAGACAAGATCTACTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCATCGT
* * * ** *
63634662 GGATCCACTTCCTATCAATATAGGAATATGGGACCTGTTATCTTCGATCTACTTCACGCCAATAC
131 CGATCCACTTCCTACCAATATAGGAAGACCGAACCTGTTATCTTCGATCTACTTCACGCCAATAC
*
63634727 ATGAAGACAAGATCTGCTTTCTGT-GATCTACTTCCTACCAATATAGGAAGACAAG-ATCTGCAT
196 ATGAAGACAAGATCTACTTTCT-TCGATCTACTTCCTACCAATATAGGAAGA-AAGAATCTGCAT
63634790 CGTCG
259 CGTCG
* * * * *
63634795 ATCCACTTTCTACCAATATAGGAAGACCGGACCTGTTATCTTTGATCTACTTCACGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACACCAATACAT
* * *
63634860 GAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGCATCGT
66 GAAGACAAGATCTACTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCATCGT
* *
63634925 CGATCCATTTCCTACCAATATAGGAAGACCGAACCTGTTATCTTTGATCTACTTCACGCCAATAC
131 CGATCCACTTCCTACCAATATAGGAAGACCGAACCTGTTATCTTCGATCTACTTCACGCCAATAC
* * *
63634990 ATGAAGACAAGATCTACTTTCTTCGGTCTACTTCCTACCAATATAGGAAGATAGAATCTGCATCT
196 ATGAAGACAAGATCTACTTTCTTCGATCTACTTCCTACCAATATAGGAAGAAAGAATCTGCATCG
63635055 TCG
261 TCG
* * * * * * * * * * * *
63635058 ATCTACTTCAC-GCCAATATATGAAGATAAGATCTGCTTTCTTCGATTTGCTTCGCCACCAGTAT
1 ATCCACTTC-CTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTC-ACACCAATAC
** * * * * * * * * * * *
63635122 GGGAAGACAAGATCTGC-ATCTTGGATCCACTT--CCATCAATATAGAAAGATAGGACCTGCTAT
64 ATGAAGACAAGATCTACTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGC-AT
* * * * * * * * * *
63635184 CTTCGATCTACTTCAC-GCCAATACATGAAGA-CAAGATCTGCTT-TCTGCGATCTACTTCGCCA
128 CGTCGATCCACTTC-CTACCAATATAGGAAGACCGA-ACCTG-TTATCTTCGATCTACTTC-ACG
*** * * * * * *
63635246 CCAATATGGGAAGACAAGATCTGC-ATCTTGGATCTACTTCCTATCAATATAGGAAGATAGGATC
189 CCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTTCCTACCAATATAGGAAGAAAGAATC
* *
63635310 TGCTACCTTCG
254 TGC-ATCGTCG
* * * * * * * *
63635321 ATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATA
1 ATCCACTTC-CTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTC-ACACCAATA
63635384 TGGGAGGACA
Statistics
Matches: 494, Mismatches: 85, Indels: 20
0.82 0.14 0.03
Matches are distributed among these distances:
261 22 0.04
262 83 0.17
263 367 0.74
264 22 0.04
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (263 bp):
ATCCACTTCCTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACACCAATACAT
GAAGACAAGATCTACTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCATCGT
CGATCCACTTCCTACCAATATAGGAAGACCGAACCTGTTATCTTCGATCTACTTCACGCCAATAC
ATGAAGACAAGATCTACTTTCTTCGATCTACTTCCTACCAATATAGGAAGAAAGAATCTGCATCG
TCG
Found at i:63635128 original size:132 final size:132
Alignment explanation
Indices: 63634992--63635623 Score: 1027
Period size: 132 Copynumber: 4.8 Consensus size: 132
63634982 GCCAATACAT
* * * * *
63634992 GAAGACAAGATCTACTTTCTTCGG-TCTACTTCCTACCAATATAGGAAGATAGAATCTGC-ATCT
1 GAAGACAAGATCTGC-ATCTT-GGATCCACTTCCTATCAATATAGGAAGATAGGATCTGCTATCT
* * * * * *
63635055 TCGATCTACTTCACGCCAATATATGAAGATAAGATCTGCTTTCTTCGATTTGCTTCGCCACCAGT
64 TCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAAT
63635120 ATGG
129 ATGG
* *
63635124 GAAGACAAGATCTGCATCTTGGATCCACTTCC-ATCAATATAGAAAGATAGGACCTGCTATCTTC
1 GAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGATCTGCTATCTTC
63635188 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATAT
66 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATAT
63635253 GG
131 GG
* *
63635255 GAAGACAAGATCTGCATCTTGGATCTACTTCCTATCAATATAGGAAGATAGGATCTGCTACCTTC
1 GAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGATCTGCTATCTTC
*
63635320 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATAT
66 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATAT
63635385 GG
131 GG
* *
63635387 GAGGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTC
1 GAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGATCTGCTATCTTC
*
63635452 GATCTACTTCACGCTAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATAT
66 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATAT
63635517 GG
131 GG
* * *
63635519 GAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTACCTTC
1 GAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGATCTGCTATCTTC
63635584 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTT
66 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTT
63635624 AATGACTTCA
Statistics
Matches: 467, Mismatches: 30, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
130 23 0.05
131 110 0.24
132 334 0.72
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (132 bp):
GAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGATAGGATCTGCTATCTTC
GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATAT
GG
Found at i:63635296 original size:219 final size:219
Alignment explanation
Indices: 63634832--63635329 Score: 687
Period size: 219 Copynumber: 2.3 Consensus size: 219
63634822 CGGACCTGTT
* * * *
63634832 ATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCAC
1 ATCTTCGATCTACTTCACACCAATATATGAAGATAAGATCTGCTTTCTTCGATCTGCTTCGCCAC
* * *
63634897 CAGTATGGGAAGACAAGATCTGCATCGTCGATCCATTTCCTACCAATATAGGAAGACCGAACCTG
66 CAGTATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGAAAGACAGAACCTG
* * * * *
63634962 TTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGGTCTACTTCCTA
131 CTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTGCGATCTACTTCCCA
*
63635027 CCAATATAGGAAGATAGAATCTGC
196 CCAATATAGGAAGAAAGAATCTGC
* *
63635051 ATCTTCGATCTACTTCACGCCAATATATGAAGATAAGATCTGCTTTCTTCGATTTGCTTCGCCAC
1 ATCTTCGATCTACTTCACACCAATATATGAAGATAAGATCTGCTTTCTTCGATCTGCTTCGCCAC
* * * * *
63635116 CAGTATGGGAAGACAAGATCTGCATCTTGGATCCACTTCC-ATCAATATAGAAAGATAGGACCTG
66 CAGTATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGAAAGACAGAACCTG
*
63635180 CTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCC
131 CTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTGCGATCTACTTC-CC
*
63635245 ACCAATATGGGAAGACAAG-ATCTGC
195 ACCAATATAGGAAGA-AAGAATCTGC
* * * * ** *
63635270 ATCTTGGATCTACTTC-CTATCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTC
1 ATCTTCGATCTACTTCAC-ACCAATATATGAAGATAAGATCTGCTTTCTTCGATCTGCTTC
63635330 ACGCCAATAC
Statistics
Matches: 247, Mismatches: 29, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
218 77 0.31
219 168 0.68
220 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (219 bp):
ATCTTCGATCTACTTCACACCAATATATGAAGATAAGATCTGCTTTCTTCGATCTGCTTCGCCAC
CAGTATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGAAAGACAGAACCTG
CTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTGCGATCTACTTCCCA
CCAATATAGGAAGAAAGAATCTGC
Found at i:63635354 original size:350 final size:350
Alignment explanation
Indices: 63634642--63635620 Score: 1078
Period size: 350 Copynumber: 2.8 Consensus size: 350
63634632 ACTAGTATGG
* * * * * * * *
63634642 GAAGACAAGATCTGC-ATCTT-GGATCCACTTCCTATCAATATAGGAATATGGGACCTGTTATCT
1 GAAGACAAGATCTGCTTTCTTCGG-TCTACTTCCTACCAATATAGGAAGATAGAATCTG-CATCT
* * *
63634705 TCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGT-GATCTACTTCCTACCAAT
64 TCGATCTACTTCACGCCAATATATGAAGATAAGATCTGCTTTCT-TCGATCTACTTCCCACCAAT
* * * *
63634769 ATAGGAAGACAAGATCTGCATCGTCGATCCACTTTCTACCAATATAGGAAGACCGGACCTGTTAT
128 ATAGGAAGACAAGATCTGCATCGTCGATCCACTTTCCACCAATATAGAAAGACAGGACCTGCTAT
* * *
63634834 CTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCA
193 CTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCA
* * * *
63634899 GTATGGGAAGACAAGATCTGCATCGTCGATCCATTTCCTACCAATATAGGAAGACCGAACCTGTT
258 ATATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGACAGAACCTGCT
* *
63634964 ATCTTTGATCTACTTCACGCCAATACAT
323 ACCTTCGATCTACTTCACGCCAATACAT
*
63634992 GAAGACAAGATCTACTTTCTTCGGTCTACTTCCTACCAATATAGGAAGATAGAATCTGCATCTTC
1 GAAGACAAGATCTGCTTTCTTCGGTCTACTTCCTACCAATATAGGAAGATAGAATCTGCATCTTC
* * *
63635057 GATCTACTTCACGCCAATATATGAAGATAAGATCTGCTTTCTTCGATTTGCTTCGCCACCAGTAT
66 GATCTACTTCACGCCAATATATGAAGATAAGATCTGCTTTCTTCGATCTACTTC-CCACCAATAT
* * * * *
63635122 GGGAAGACAAGATCTGCATCTTGGATCCAC-TTCCATCAATATAGAAAGATAGGACCTGCTATCT
130 AGGAAGACAAGATCTGCATCGTCGATCCACTTTCCACCAATATAGAAAGACAGGACCTGCTATCT
63635186 TCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAAT
195 TCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAAT
* * * * * * *
63635251 ATGGGAAGACAAGATCTGCATCTTGGATCTACTTCCTATCAATATAGGAAGATAGGATCTGCTAC
260 ATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGACAGAACCTGCTAC
63635316 CTTCGATCTACTTCACGCCAATACAT
325 CTTCGATCTACTTCACGCCAATACAT
* * * * *
63635342 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAGGACA-AGATCTGCATCT
1 GAAGACAAGATCTGCTTTCTTCGGTCTACTTC-CTACCAATATAGGAAGATAGA-ATCTGCATCT
* * ** * * * * * * *
63635406 TGGATCCACTTC-CTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCTAAT
64 TCGATCTACTTCAC-GCCAATATATGAAGATAAGATCTGCTTTCTTCGATCTACTTCCCACCAAT
* * * * * * * * *
63635470 ACATGAAGACAAGATCTGCTTTC-TGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC
128 ATAGGAAGACAAGATCTGC-ATCGT-CGATCCACTT-TCCACCAATATAGAAAGACAGGACCTGC
* * * * * * ** * *
63635534 -ATCTTCGATCCACTTC-CTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTC-AC
190 TATCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCC
* ***
63635596 GCCAATACATGAAGACAAGATCTGC
254 ACCAATATGGGAAGACAAGATCTGC
63635621 TTTAATGACT
Statistics
Matches: 530, Mismatches: 87, Indels: 23
0.83 0.14 0.04
Matches are distributed among these distances:
349 1 0.00
350 289 0.55
351 167 0.32
352 52 0.10
353 21 0.04
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (350 bp):
GAAGACAAGATCTGCTTTCTTCGGTCTACTTCCTACCAATATAGGAAGATAGAATCTGCATCTTC
GATCTACTTCACGCCAATATATGAAGATAAGATCTGCTTTCTTCGATCTACTTCCCACCAATATA
GGAAGACAAGATCTGCATCGTCGATCCACTTTCCACCAATATAGAAAGACAGGACCTGCTATCTT
CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATA
TGGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGACAGAACCTGCTACC
TTCGATCTACTTCACGCCAATACAT
Found at i:63636297 original size:108 final size:108
Alignment explanation
Indices: 63636108--63636303 Score: 329
Period size: 108 Copynumber: 1.8 Consensus size: 108
63636098 GAAAAATGCT
*
63636108 TGAAAAAGATTATCAAAATGGACAAAATGAAATTTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
1 TGAAAAAGATTATCAAAATGGACAAAATGAAAATTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
63636173 CAATCAAGATAGCAAATTTTGCTGAGATACGTGATGAATAAGA
66 CAATCAAGATAGCAAATTTTGCTGAGATACGTGATGAATAAGA
* * * **
63636216 TGAAAAAGATTATCACAATGGATAAGATGAAAATTTGTTGAGAGCAAAGCTCTAAATGAACAAAT
1 TGAAAAAGATTATCAAAATGGACAAAATGAAAATTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
*
63636281 TAATCAAGATAGCAAATTTTGCT
66 CAATCAAGATAGCAAATTTTGCT
63636304 AGAATACAAA
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
108 81 1.00
ACGTcount: A:0.46, C:0.11, G:0.17, T:0.26
Consensus pattern (108 bp):
TGAAAAAGATTATCAAAATGGACAAAATGAAAATTTGTTGAGAGCAAAGCTCTAAACAAACAAAT
CAATCAAGATAGCAAATTTTGCTGAGATACGTGATGAATAAGA
Found at i:63636656 original size:7 final size:7
Alignment explanation
Indices: 63636640--63636689 Score: 61
Period size: 7 Copynumber: 7.4 Consensus size: 7
63636630 TGGCCTCTCC
63636640 TTTTTC-
1 TTTTTCT
63636646 TTTTTCT
1 TTTTTCT
63636653 TTTTTC-
1 TTTTTCT
63636659 -TTTTCT
1 TTTTTCT
63636665 TTTTTCAT
1 TTTTTC-T
*
63636673 TTTTTCA
1 TTTTTCT
63636680 TTTTTCT
1 TTTTTCT
63636687 TTT
1 TTT
63636690 CGTTTTTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
5 5 0.13
6 6 0.16
7 20 0.53
8 7 0.18
ACGTcount: A:0.04, C:0.14, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTTCT
Found at i:63636696 original size:7 final size:6
Alignment explanation
Indices: 63636639--63636689 Score: 50
Period size: 6 Copynumber: 7.8 Consensus size: 6
63636629 TTGGCCTCTC
63636639 CTTTTT CTTTTT CTTTTT -TCTTTT CTTTTTT CATTTTTT CATTTTT CTTTT
1 CTTTTT CTTTTT CTTTTT CT-TTTT C-TTTTT C--TTTTT C-TTTTT CTTTT
63636690 CGTTTTTTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
5 1 0.03
6 20 0.50
7 11 0.28
8 8 0.20
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.80
Consensus pattern (6 bp):
CTTTTT
Found at i:63636696 original size:12 final size:13
Alignment explanation
Indices: 63636640--63636689 Score: 66
Period size: 12 Copynumber: 3.8 Consensus size: 13
63636630 TGGCCTCTCC
63636640 TTTTTCTTTTTCT
1 TTTTTCTTTTTCT
63636653 TTTTTC-TTTTCT
1 TTTTTCTTTTTCT
*
63636665 TTTTTCATTTTTTCA
1 TTTTTC--TTTTTCT
63636680 TTTTTCTTTT
1 TTTTTCTTTT
63636690 CGTTTTTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
12 12 0.36
13 10 0.30
15 11 0.33
ACGTcount: A:0.04, C:0.14, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTTCTTTTTCT
Found at i:63637158 original size:12 final size:12
Alignment explanation
Indices: 63637143--63637187 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
63637133 TTTTATTTGG
63637143 TTTTTTTTGGTT
1 TTTTTTTTGGTT
*
63637155 TTTTTTTTGCTT
1 TTTTTTTTGGTT
*
63637167 TTTATTTTCTCGTT
1 TTT-TTTT-TGGTT
63637181 TTTTTTT
1 TTTTTTT
63637188 ACTTTTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
12 14 0.50
13 8 0.29
14 6 0.21
ACGTcount: A:0.02, C:0.07, G:0.09, T:0.82
Consensus pattern (12 bp):
TTTTTTTTGGTT
Found at i:63637168 original size:11 final size:11
Alignment explanation
Indices: 63637133--63637207 Score: 53
Period size: 11 Copynumber: 6.5 Consensus size: 11
63637123 GAGGTTTTTC
* *
63637133 TTTTATTTGGT
1 TTTTTTTTGCT
* *
63637144 TTTTTTTGGTT
1 TTTTTTTTGCT
63637155 TTTTTTTTGCT
1 TTTTTTTTGCT
*
63637166 TTTTATTTTCTCGT
1 TTTT-TTTT-GC-T
*
63637180 TTTTTTTTAC-
1 TTTTTTTTGCT
63637190 TTTTTTTTGTCT
1 TTTTTTTTG-CT
63637202 TTTTTT
1 TTTTTT
63637208 CCCCCACTGA
Statistics
Matches: 51, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
10 8 0.16
11 22 0.43
12 11 0.22
13 5 0.10
14 5 0.10
ACGTcount: A:0.04, C:0.07, G:0.09, T:0.80
Consensus pattern (11 bp):
TTTTTTTTGCT
Found at i:63637194 original size:12 final size:11
Alignment explanation
Indices: 63637143--63637207 Score: 58
Period size: 11 Copynumber: 5.5 Consensus size: 11
63637133 TTTTATTTGG
**
63637143 TTTTTTTTGGT
1 TTTTTTTTTCT
63637154 TTTTTTTTTGCT
1 TTTTTTTTT-CT
63637166 TTTTATTTTCTCGT
1 TTTT-TTTT-TC-T
*
63637180 TTTTTTTTACT
1 TTTTTTTTTCT
*
63637191 TTTTTTTGTCT
1 TTTTTTTTTCT
63637202 TTTTTT
1 TTTTTT
63637208 CCCCCACTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
11 24 0.53
12 6 0.13
13 9 0.20
14 6 0.13
ACGTcount: A:0.03, C:0.08, G:0.08, T:0.82
Consensus pattern (11 bp):
TTTTTTTTTCT
Found at i:63637207 original size:25 final size:25
Alignment explanation
Indices: 63637153--63637207 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 25
63637143 TTTTTTTTGG
*
63637153 TTTTTTTTTTGCTTTTTATTTTCTC
1 TTTTTTTTTTACTTTTTATTTTCTC
* *
63637178 GTTTTTTTTTAC-TTTT-TTTTGTC
1 TTTTTTTTTTACTTTTTATTTTCTC
63637201 TTTTTTT
1 TTTTTTT
63637208 CCCCCACTGA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
23 12 0.46
24 4 0.15
25 10 0.38
ACGTcount: A:0.04, C:0.09, G:0.05, T:0.82
Consensus pattern (25 bp):
TTTTTTTTTTACTTTTTATTTTCTC
Found at i:63638601 original size:62 final size:62
Alignment explanation
Indices: 63638499--63638677 Score: 322
Period size: 62 Copynumber: 2.9 Consensus size: 62
63638489 CTCAATGCAC
*
63638499 TTTTGGATTTTAAGAAATTTATTGTATGCAATGAAACGTAATGTTGATGCATGAATGCGTAT
1 TTTTGGATTTTAAGAAATTTATTGTATGCAATGAAACGTAATGTTGATGCATGAATGCATAT
*
63638561 TTTTAGATTTTAAGAAATTTATTGTATGCAATGAAACGTAATGTTGATGCATGAATGCATAT
1 TTTTGGATTTTAAGAAATTTATTGTATGCAATGAAACGTAATGTTGATGCATGAATGCATAT
* *
63638623 TTTTGGATTTTAAGAAATTTATTGTATGCAATAAAATGTAATGTTGATGCATGAA
1 TTTTGGATTTTAAGAAATTTATTGTATGCAATGAAACGTAATGTTGATGCATGAA
63638678 AAGATACGTG
Statistics
Matches: 112, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 112 1.00
ACGTcount: A:0.35, C:0.06, G:0.19, T:0.41
Consensus pattern (62 bp):
TTTTGGATTTTAAGAAATTTATTGTATGCAATGAAACGTAATGTTGATGCATGAATGCATAT
Found at i:63643033 original size:24 final size:24
Alignment explanation
Indices: 63642993--63643046 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
63642983 TATATATTCT
* *
63642993 AATTAAAT-TTTATAAATAATTAA
1 AATTAATTATTTAGAAATAATTAA
* *
63643016 TATTAATTATTTAGAAATATTTAA
1 AATTAATTATTTAGAAATAATTAA
63643040 AATTAAT
1 AATTAAT
63643047 ATTATATTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 6 0.24
24 19 0.76
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (24 bp):
AATTAATTATTTAGAAATAATTAA
Found at i:63644420 original size:3 final size:3
Alignment explanation
Indices: 63644412--63644436 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
63644402 CTGTCGTATA
63644412 TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
63644437 TTTTTTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:63645376 original size:634 final size:625
Alignment explanation
Indices: 63643988--63645392 Score: 2275
Period size: 626 Copynumber: 2.2 Consensus size: 625
63643978 CTTATCTTTT
*
63643988 TTTTCTTCTAGGCTTTTTCATGTATTTGTTGGATTTTTAGAGGGTCATATCTACATATACATATA
1 TTTTCTTCTAGGCTTTTTCATGTATTTGTTGGATTTTTAGAGGGTCATATCTACATATCCATATA
* **
63644053 TGCATTGAATGTGGATGTAAGGGATACTTTAAGAAATATGAAGAGTTAGAACAACATAACCTTTT
66 TGCATTGGATGTGGATGTAAGGGGCACTTTAAGAAATATGAAGAGTTAGAACAACATAACCTTTT
* * * *
63644118 ACCCCTGGCCATGTTTCTAATAAATTTAATTTCAAATCATCTGGTTTGGATTTTGGAGGACTGGT
131 ACCCCTGACCATGTTTCTAATAAATTTAACTTCAAATCACCTGGTTTGGATTTTGGAGGACTGAT
*
63644183 CGGAATGTAAACTTCCCAAAATAGAAGTTTTGAATTATCATTTTATTTATTTATGTATTTATCTC
196 CGGAATGTAAACTTCCCAAAATAGAAGTTTTGAATTATCATTTTATTTATTTATATATTTATCTC
63644248 CATCGCCTTAGGTTTTTTATTTTTTCTTCAATTGATTGAATATTTTCACATATGAAATGCAATTG
261 CATCGCCTTAGGTTTTTTA-TTTTTCTTCAATTGATTGAATATTTTCACATATGAAATGCAATTG
63644313 AAACAGACTCCAGCTTGATGAAGCAACCTGAATGCAACAAGGGAGAAGGGGAAGGGGAGGATAAG
325 AAACAGACTCCAGCTTGATGAAGCAACCTGAATGCAACAAGGGAGAAGGGGAAGGGGAGGATAAG
* *
63644378 GAACTCAAAGGTATTTCTTGAATTCTGTCGTATATCTTCTTCTTCTTCTTCTTCTTCTTTTTTTT
390 GAACTCAAAGGTATTTCTTGAATTCTGTAGTATATCTTCTTCTTCTTCTTCTTATTCTTTTTTTT
*
63644443 TTTTCCTATTTACTAAGGAAAGATACGATGGTCCAAAAAGAAAAAGGGGAACGCATTTGGATTCA
455 TTTTCCTATTTACTAAGGAAAGATACGATGGTCCAAAAACAAAAAGGGGAACGCATTTGGATTCA
* *
63644508 GTGCTTAGCTTTTTCTTTTGGTTTGGCATGAATTTTATTTGGCTTTAGCCTTTACCCTTATTTTG
520 GTGCTTAGCTTTTTCTTTTGGTTTGGCACGAATTTTATTTGGCTTTAGCCTTTACCCTTACTTTG
*
63644573 ACTCAGGTGTGTCTGAGATGGATCAACATGGGTATTTTCAA
585 ACTCAGGTGTGTCTGAGATGAATCAACATGGGTATTTTCAA
* * *
63644614 TTTTCTTCTAGGCATTTTCATGTATTTGTTGGTTTTTTAGAGGGTCATAACTACATATCCATATA
1 TTTTCTTCTAGGCTTTTTCATGTATTTGTTGGATTTTTAGAGGGTCATATCTACATATCCATATA
*
63644679 TGCATTGGATGTGGATGTAAGGGGCACTTTAAGAAATATGGAGAGTTAGAACAACATAACCTTTT
66 TGCATTGGATGTGGATGTAAGGGGCACTTTAAGAAATATGAAGAGTTAGAACAACATAACCTTTT
*
63644744 ACCCCTGACCATTTTTCTAATAAATTTAACTTCAAATCACCTGGTTTGGATTTTGGAGGACTGAT
131 ACCCCTGACCATGTTTCTAATAAATTTAACTTCAAATCACCTGGTTTGGATTTTGGAGGACTGAT
* *
63644809 CGGAACT-TAAA-TTCCCCAAAATAGAAGTTTTGAATTGTCATTTTATTTATTTATATATTTATT
196 CGGAA-TGTAAACTT-CCCAAAATAGAAGTTTTGAATTATCATTTTATTTATTTATATATTTATC
63644872 TCCATCGCCTTAGG-TTTTTA-TTTTCTTCAATTGATTGAATATTTTCACATATGAAATGCAATT
259 TCCATCGCCTTAGGTTTTTTATTTTTCTTCAATTGATTGAATATTTTCACATATGAAATGCAATT
63644935 GAAACAGACTCCAGCTTGATGAAGCAACCTGAATGCAACAAGGGAGAAGGGGAAGGGGAAGGGGA
324 GAAACAGACTCCAGCTTGATGAAGCAACCTGAATGCAACAAGGGAGAAGGGGAAGGGG-A---G-
* *
63645000 AGATACA-GAACTCAAAGGTATTTCTTGAATTCTGTAGTCTATCTTCTTCTTCTTCTTTTTATT-
384 -GATA-AGGAACTCAAAGGTATTTCTTGAATTCTGTAGTATATCTTCTTCTTCTTCTTCTTATTC
*
63645063 TATTTTTATTATTTT-CTATTTACTAAGGAAAGATACGATGGTCCAAAAACCAAAAGGGGAACGC
447 T-TTTTT-TT-TTTTCCTATTTACTAAGGAAAGATACGATGGTCCAAAAACAAAAAGGGGAACGC
* *
63645127 ATTTGGATTCAGTGTTTAGCTTTTTCTTTTGGTTTGGCACGAATTTTATTTGGCTTTTGCCTTTA
509 ATTTGGATTCAGTGCTTAGCTTTTTCTTTTGGTTTGGCACGAATTTTATTTGGCTTTAGCCTTTA
* *
63645192 CCCTTACTTTGACTCAGGTGTGAGTGTCTGAGATGAATCGACATGGGTATTTTCAG
574 CCCTTACTTTGACTCA-G-GT--GTGTCTGAGATGAATCAACATGGGTATTTTCAA
* * * *
63645248 TTTTCTTCTAGGCTTTTTAATGTATTTGTTGGATGTTTAGATGGTCATATCTACTTATCCATATA
1 TTTTCTTCTAGGCTTTTTCATGTATTTGTTGGATTTTTAGAGGGTCATATCTACATATCCATATA
*
63645313 TGCATTGGATGTGAATGTAAGGGGCACTTTAAGAAATATGAAGAGTTAGAACAACATAACCTTTT
66 TGCATTGGATGTGGATGTAAGGGGCACTTTAAGAAATATGAAGAGTTAGAACAACATAACCTTTT
* * *
63645378 TCCCCTTATCATGTT
131 ACCCCTGACCATGTT
63645393 AAGTATCTCA
Statistics
Matches: 721, Mismatches: 42, Indels: 24
0.92 0.05 0.03
Matches are distributed among these distances:
623 101 0.14
624 1 0.00
625 8 0.01
626 251 0.35
627 2 0.00
628 1 0.00
629 61 0.08
630 127 0.18
631 5 0.01
632 2 0.00
634 162 0.22
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.39
Consensus pattern (625 bp):
TTTTCTTCTAGGCTTTTTCATGTATTTGTTGGATTTTTAGAGGGTCATATCTACATATCCATATA
TGCATTGGATGTGGATGTAAGGGGCACTTTAAGAAATATGAAGAGTTAGAACAACATAACCTTTT
ACCCCTGACCATGTTTCTAATAAATTTAACTTCAAATCACCTGGTTTGGATTTTGGAGGACTGAT
CGGAATGTAAACTTCCCAAAATAGAAGTTTTGAATTATCATTTTATTTATTTATATATTTATCTC
CATCGCCTTAGGTTTTTTATTTTTCTTCAATTGATTGAATATTTTCACATATGAAATGCAATTGA
AACAGACTCCAGCTTGATGAAGCAACCTGAATGCAACAAGGGAGAAGGGGAAGGGGAGGATAAGG
AACTCAAAGGTATTTCTTGAATTCTGTAGTATATCTTCTTCTTCTTCTTCTTATTCTTTTTTTTT
TTTCCTATTTACTAAGGAAAGATACGATGGTCCAAAAACAAAAAGGGGAACGCATTTGGATTCAG
TGCTTAGCTTTTTCTTTTGGTTTGGCACGAATTTTATTTGGCTTTAGCCTTTACCCTTACTTTGA
CTCAGGTGTGTCTGAGATGAATCAACATGGGTATTTTCAA
Found at i:63661639 original size:28 final size:29
Alignment explanation
Indices: 63661581--63661644 Score: 103
Period size: 29 Copynumber: 2.2 Consensus size: 29
63661571 TGTGAGGGCA
63661581 ATTTTTTGATTATTTACCGAAATGGGCCC
1 ATTTTTTGATTATTTACCGAAATGGGCCC
* *
63661610 ATTTTTTGATTATTTACCGGAAT-GGTCC
1 ATTTTTTGATTATTTACCGAAATGGGCCC
63661638 ATTTTTT
1 ATTTTTT
63661645 AAGAAATCGC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
28 11 0.33
29 22 0.67
ACGTcount: A:0.22, C:0.14, G:0.16, T:0.48
Consensus pattern (29 bp):
ATTTTTTGATTATTTACCGAAATGGGCCC
Found at i:63662078 original size:97 final size:97
Alignment explanation
Indices: 63661912--63662104 Score: 368
Period size: 97 Copynumber: 2.0 Consensus size: 97
63661902 TTTTTTGACA
*
63661912 TTTCTAAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGGGAAGAAATTGTGAAATCG
1 TTTCTAAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTGAAATCG
63661977 CGCCCTCGTGGACGCGATTTTGCTACAGTAGG
66 CGCCCTCGTGGACGCGATTTTGCTACAGTAGG
*
63662009 TTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTGAAATCG
1 TTTCTAAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTGAAATCG
63662074 CGCCCTCGTGGACGCGATTTTGCTACAGTAG
66 CGCCCTCGTGGACGCGATTTTGCTACAGTAG
63662105 CAAGTTTGGG
Statistics
Matches: 94, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
97 94 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (97 bp):
TTTCTAAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGTGAAATCG
CGCCCTCGTGGACGCGATTTTGCTACAGTAGG
Found at i:63663838 original size:96 final size:97
Alignment explanation
Indices: 63663674--63663865 Score: 350
Period size: 96 Copynumber: 2.0 Consensus size: 97
63663664 TTTTTTGACA
* * *
63663674 TTTCTGAGCAAATAGTATAAAATCGCTTCTACTAGGATGCTATTTGGGAAGAAATTGTGAAATCG
1 TTTCTGAGCAAATAGTATAAAATCGCTTCTACCAAGATGCTATTTGAGAAGAAATTGTGAAATCG
63663739 CGCCCTCGTGGACGCGATTTTGCTA-AGTAGG
66 CGCCCTCGTGGACGCGATTTTGCTACAGTAGG
63663770 TTTCTGAGCAAATAGTATAAAATCGCTTCTACCAAGATGCTATTTGAGAAGAAATTGTGAAATCG
1 TTTCTGAGCAAATAGTATAAAATCGCTTCTACCAAGATGCTATTTGAGAAGAAATTGTGAAATCG
63663835 CGCCCTCGTGGACGCGATTTTGCTACAGTAG
66 CGCCCTCGTGGACGCGATTTTGCTACAGTAG
63663866 CAAGTTTGGG
Statistics
Matches: 92, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
96 87 0.95
97 5 0.05
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (97 bp):
TTTCTGAGCAAATAGTATAAAATCGCTTCTACCAAGATGCTATTTGAGAAGAAATTGTGAAATCG
CGCCCTCGTGGACGCGATTTTGCTACAGTAGG
Found at i:63665602 original size:97 final size:97
Alignment explanation
Indices: 63665436--63665624 Score: 360
Period size: 97 Copynumber: 1.9 Consensus size: 97
63665426 TTGACATTTA
* *
63665436 TGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGCGAAGAAATTGTGAAATCGCGCC
1 TGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTATGAAATCGCGCC
63665501 CTCGTGGACGCGATTTTGCTACAGTAGGTTTC
66 CTCGTGGACGCGATTTTGCTACAGTAGGTTTC
63665533 TGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTATGAAATCGCGCC
1 TGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTATGAAATCGCGCC
63665598 CTCGTGGACGCGATTTTGCTACAGTAG
66 CTCGTGGACGCGATTTTGCTACAGTAG
63665625 CAAGTTTGGG
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
97 90 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (97 bp):
TGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTATGAAATCGCGCC
CTCGTGGACGCGATTTTGCTACAGTAGGTTTC
Found at i:63666906 original size:28 final size:27
Alignment explanation
Indices: 63666875--63666927 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
63666865 TTTTTTCAAA
63666875 ATTTACCGAAATGGGCCCATTTTTTATT
1 ATTTACCGAAAT-GGCCCATTTTTTATT
* * *
63666903 ATTTGCCGGAATGGTCCATTTTTTA
1 ATTTACCGAAATGGCCCATTTTTTA
63666928 GTAAATCGCG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 12 0.55
28 10 0.45
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.43
Consensus pattern (27 bp):
ATTTACCGAAATGGCCCATTTTTTATT
Found at i:63667357 original size:96 final size:97
Alignment explanation
Indices: 63667193--63667384 Score: 359
Period size: 96 Copynumber: 2.0 Consensus size: 97
63667183 TTTTTTGACA
* *
63667193 TTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGGGAAGAAATTGTGAAATCG
1 TTTCTGAGCAAATAGTATAAAATCGCTTCTACCAAGATGCTATTTGAGAAGAAATTGTGAAATCG
63667258 CGCCCTCGTGGACGCGA-TTTGCTACAGTAGG
66 CGCCCTCGTGGACGCGATTTTGCTACAGTAGG
63667289 TTTCTGAGCAAATAGTATAAAATCGCTTCTACCAAGATGCTATTTGAGAAGAAATTGTGAAATCG
1 TTTCTGAGCAAATAGTATAAAATCGCTTCTACCAAGATGCTATTTGAGAAGAAATTGTGAAATCG
63667354 CGCCCTCGTGGACGCGATTTTGCTACAGTAG
66 CGCCCTCGTGGACGCGATTTTGCTACAGTAG
63667385 CAAGTTTGGG
Statistics
Matches: 93, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
96 80 0.86
97 13 0.14
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (97 bp):
TTTCTGAGCAAATAGTATAAAATCGCTTCTACCAAGATGCTATTTGAGAAGAAATTGTGAAATCG
CGCCCTCGTGGACGCGATTTTGCTACAGTAGG
Found at i:63669042 original size:124 final size:124
Alignment explanation
Indices: 63668822--63669049 Score: 359
Period size: 124 Copynumber: 1.8 Consensus size: 124
63668812 TTATTTCGAG
* *
63668822 TTGACGTTTCTGGTCAAATAATATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGCG
1 TTGACATTTCTGGTCAAATAATATAAAATCGCTTCTACCAAGATGCTATTTGAGAAGAAATTGCG
* *
63668887 AATTTGCGCCCTCGTGGACGCGATTTAGCTACAGCAGGTCATGTAAGAAATAAATTTTT
66 AAATCGCGCCCTCGTGGACGCGATTTAGCTACAGCAGGTCATGTAAGAAATAAATTTTT
* * *
63668946 TTGACATTTCTGAG-CAAATAGTATAAAATCGCTTCTACCAAGATGCTATTTGGGAAGAAATTGT
1 TTGACATTTCTG-GTCAAATAATATAAAATCGCTTCTACCAAGATGCTATTTGAGAAGAAATTGC
* *
63669010 GAAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGGT
65 GAAATCGCGCCCTCGTGGACGCGATTTAGCTACAGCAGGT
63669050 TTCTGGGCAA
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
124 93 0.99
125 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.31
Consensus pattern (124 bp):
TTGACATTTCTGGTCAAATAATATAAAATCGCTTCTACCAAGATGCTATTTGAGAAGAAATTGCG
AAATCGCGCCCTCGTGGACGCGATTTAGCTACAGCAGGTCATGTAAGAAATAAATTTTT
Found at i:63669118 original size:97 final size:97
Alignment explanation
Indices: 63668952--63669144 Score: 350
Period size: 97 Copynumber: 2.0 Consensus size: 97
63668942 TTTTTTGACA
* *
63668952 TTTCTGAGCAAATAGTATAAAATCGCTTCTACCAAGATGCTATTTGGGAAGAAATTGTGAAATCG
1 TTTCTGAGCAAATAGTATAAAATCGCTTCTACCAAGATGCTATTTGAGAAGAAATTATGAAATCG
63669017 CGCCCTCGTGGACGCGATTTTGCTACAGTAGG
66 CGCCCTCGTGGACGCGATTTTGCTACAGTAGG
* *
63669049 TTTCTGGGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTATGAAATCG
1 TTTCTGAGCAAATAGTATAAAATCGCTTCTACCAAGATGCTATTTGAGAAGAAATTATGAAATCG
63669114 CGCCCTCGTGGACGCGATTTTGCTACAGTAG
66 CGCCCTCGTGGACGCGATTTTGCTACAGTAG
63669145 CAAGTTTGGG
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
97 92 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (97 bp):
TTTCTGAGCAAATAGTATAAAATCGCTTCTACCAAGATGCTATTTGAGAAGAAATTATGAAATCG
CGCCCTCGTGGACGCGATTTTGCTACAGTAGG
Found at i:63672331 original size:55 final size:56
Alignment explanation
Indices: 63672268--63672500 Score: 452
Period size: 56 Copynumber: 4.2 Consensus size: 56
63672258 GTAAAATTAT
63672268 AATTATTAAGT-CAAAAAAATGTGTTAATGGTTAGTAAAATTATCAAATTATGTAA
1 AATTATTAAGTCCAAAAAAATGTGTTAATGGTTAGTAAAATTATCAAATTATGTAA
63672323 AATTATTAAGTCCAAAAAAATGTGTTAATGGTTAGTAAAATTATCAAATTATGTAA
1 AATTATTAAGTCCAAAAAAATGTGTTAATGGTTAGTAAAATTATCAAATTATGTAA
63672379 AATTATTAAGTCCAAAAAAATGTGTTAATGGTTAGTAAAATTATCAAATTATGTAA
1 AATTATTAAGTCCAAAAAAATGTGTTAATGGTTAGTAAAATTATCAAATTATGTAA
63672435 AATTATTAAGT-CAAAAAAATGTGTTAATGGTTAGTAAAATTATCAAATTATGTAA
1 AATTATTAAGTCCAAAAAAATGTGTTAATGGTTAGTAAAATTATCAAATTATGTAA
63672490 AATTATTAAGT
1 AATTATTAAGT
63672501 TAGGTTAGGG
Statistics
Matches: 177, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
55 66 0.37
56 111 0.63
ACGTcount: A:0.47, C:0.04, G:0.12, T:0.36
Consensus pattern (56 bp):
AATTATTAAGTCCAAAAAAATGTGTTAATGGTTAGTAAAATTATCAAATTATGTAA
Found at i:63672471 original size:111 final size:111
Alignment explanation
Indices: 63672268--63672500 Score: 450
Period size: 111 Copynumber: 2.1 Consensus size: 111
63672258 GTAAAATTAT
63672268 AATTATTAAGTCAAAAAAATGTGTTAATGGTTAGTAAAATTATCAAATTATGTAAAATTATTAAG
1 AATTATTAAGTCAAAAAAATGTGTTAATGGTTAGTAAAATTATCAAATTATGTAAAATTATTAAG
63672333 TCCAAAAAAATGTGTTAATGGTTAGTAAAATTATCAAATTATGTAA
66 TCCAAAAAAATGTGTTAATGGTTAGTAAAATTATCAAATTATGTAA
63672379 AATTATTAAGTCCAAAAAAATGTGTTAATGGTTAGTAAAATTATCAAATTATGTAAAATTATTAA
1 AATTATTAAGT-CAAAAAAATGTGTTAATGGTTAGTAAAATTATCAAATTATGTAAAATTATTAA
63672444 GT-CAAAAAAATGTGTTAATGGTTAGTAAAATTATCAAATTATGTAA
65 GTCCAAAAAAATGTGTTAATGGTTAGTAAAATTATCAAATTATGTAA
63672490 AATTATTAAGT
1 AATTATTAAGT
63672501 TAGGTTAGGG
Statistics
Matches: 121, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
111 66 0.55
112 55 0.45
ACGTcount: A:0.47, C:0.04, G:0.12, T:0.36
Consensus pattern (111 bp):
AATTATTAAGTCAAAAAAATGTGTTAATGGTTAGTAAAATTATCAAATTATGTAAAATTATTAAG
TCCAAAAAAATGTGTTAATGGTTAGTAAAATTATCAAATTATGTAA
Found at i:63672535 original size:29 final size:29
Alignment explanation
Indices: 63672494--63672770 Score: 346
Period size: 29 Copynumber: 9.7 Consensus size: 29
63672484 ATGTAAAATT
*
63672494 ATTAAGTTAGGTTAGGGTTAGGGTTTGTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
* *
63672523 ATTAAATTAGGTTAGGGTTAAGGTTTTTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
63672552 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
* * * *
63672581 ATTAGGTTACGTTAGAGTTTGGGTTTTTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
* *
63672610 ATTAGGTTATGTTAGGGTTAGGGTTTTTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
* *
63672639 ATTATGCTAGGTTAGGGTTTAGGGTTTTTA
1 ATTAAGTTAGGTTAGGG-TTAGGGTTTTTA
* *
63672669 ATTAGGTTATGTTAGGGTTAGGGTTTTTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
** *
63672698 ATTTGGTTATGTTAGGGTTAGGGTTTTTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
* *
63672727 ATTACG---GTTTA-GGTTAGGGTTTTTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
*
63672752 ATTAAATTAGGTTAGGGTT
1 ATTAAGTTAGGTTAGGGTT
63672771 TTTATTACAT
Statistics
Matches: 217, Mismatches: 26, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
25 18 0.08
26 3 0.01
28 4 0.02
29 166 0.76
30 26 0.12
ACGTcount: A:0.23, C:0.01, G:0.30, T:0.47
Consensus pattern (29 bp):
ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
Done.