Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 219 of 221
Found at i:63916153 original size:84 final size:84
Alignment explanation
Indices: 63916053--63916284 Score: 256
Period size: 84 Copynumber: 2.8 Consensus size: 84
63916043 TCTATAGTAC
* * * *
63916053 CGATCATCAGGTGAGTAAGAA-CGGTCCCGCCTTCTATAGTATCGATCCTCAGGAGAGTAAGAAC
1 CGATCATCAGGAGAGTAA-AACCGATCACGCCTTCTATAGTATCGATCATCAGGAGAGTAAGAAC
63916117 GATCCCGTCTGCAGTGGTAA
65 GATCCCGTCTGCAGTGGTAA
* *
63916137 CGATCATCGGGAGAGTAAAACCGATCACGCCTTCTATAGTATCTATCATCAGGAGAGTAAGAACG
1 CGATCATCAGGAGAGTAAAACCGATCACGCCTTCTATAGTATCGATCATCAGGAGAGTAAGAACG
* **
63916202 GTCCCGTCT--ATGATAATAA
66 ATCCCGTCTGCA-G-TGGTAA
* * ** * * *
63916221 CAATCATAAGGAGAGTAGGACTGATCACGCCTT-TGATAGTATCGATCTTCAGGAGAGTAGGAAC
1 CGATCATCAGGAGAGTAAAACCGATCACGCCTTCT-ATAGTATCGATCATCAGGAGAGTAAGAAC
63916285 AGTAACGATA
Statistics
Matches: 126, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
82 1 0.01
83 4 0.03
84 121 0.96
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (84 bp):
CGATCATCAGGAGAGTAAAACCGATCACGCCTTCTATAGTATCGATCATCAGGAGAGTAAGAACG
ATCCCGTCTGCAGTGGTAA
Found at i:63916394 original size:6 final size:6
Alignment explanation
Indices: 63916383--63916436 Score: 108
Period size: 6 Copynumber: 9.0 Consensus size: 6
63916373 GTAAGACCTG
63916383 CTCCTA CTCCTA CTCCTA CTCCTA CTCCTA CTCCTA CTCCTA CTCCTA
1 CTCCTA CTCCTA CTCCTA CTCCTA CTCCTA CTCCTA CTCCTA CTCCTA
63916431 CTCCTA
1 CTCCTA
63916437 TCAGATGAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 48 1.00
ACGTcount: A:0.17, C:0.50, G:0.00, T:0.33
Consensus pattern (6 bp):
CTCCTA
Found at i:63920208 original size:19 final size:21
Alignment explanation
Indices: 63920182--63920236 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
63920172 TCTTAACAAA
63920182 AAAAAAATCAAAATTATTT-T
1 AAAAAAATCAAAATTATTTAT
* * *
63920202 TAAAAATTTAAAA-TATTTAT
1 AAAAAAATCAAAATTATTTAT
63920222 AAAAAAATCAAAATT
1 AAAAAAATCAAAATT
63920237 TTAAAAAATA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
19 5 0.19
20 21 0.78
21 1 0.04
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35
Consensus pattern (21 bp):
AAAAAAATCAAAATTATTTAT
Found at i:63920239 original size:19 final size:19
Alignment explanation
Indices: 63920182--63920244 Score: 65
Period size: 20 Copynumber: 3.3 Consensus size: 19
63920172 TCTTAACAAA
*
63920182 AAAAAAATCAAAATTATTTT
1 AAAAAAATCAAAATT-TTAT
* * *
63920202 TAAAAATTTAAAATATTTAT
1 AAAAAAATCAAAAT-TTTAT
63920222 AAAAAAATCAAAATTTTA-
1 AAAAAAATCAAAATTTTAT
63920240 AAAAA
1 AAAAA
63920245 TATAAATAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
18 5 0.14
19 4 0.11
20 25 0.71
21 1 0.03
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAAAAATCAAAATTTTAT
Found at i:63920247 original size:30 final size:30
Alignment explanation
Indices: 63920211--63920269 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
63920201 TTAAAAATTT
**
63920211 AAAATATTTATAAAAAAATCAAAATTTTAA
1 AAAATATAAATAAAAAAATCAAAATTTTAA
* *
63920241 AAAATATAAATAAAAAATTTAAAATTTTA
1 AAAATATAAATAAAAAAATCAAAATTTTA
63920270 GAAATTTTCC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (30 bp):
AAAATATAAATAAAAAAATCAAAATTTTAA
Found at i:63940614 original size:13 final size:13
Alignment explanation
Indices: 63940593--63940656 Score: 92
Period size: 13 Copynumber: 4.9 Consensus size: 13
63940583 ACACTCAAAT
63940593 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
* *
63940606 TTCTGAAAATCAC
1 TTCTCAAAAGCAC
* *
63940619 TTTTGAAAAGCAC
1 TTCTCAAAAGCAC
63940632 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
63940645 TTCTCAAAAGCA
1 TTCTCAAAAGCA
63940657 ATGAAGAACT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 45 1.00
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.27
Consensus pattern (13 bp):
TTCTCAAAAGCAC
Found at i:63952179 original size:30 final size:31
Alignment explanation
Indices: 63952127--63952189 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 31
63952117 GGCTCGGCCT
63952127 ATTCATCATAATTCATGCAATATCAAAGAAC
1 ATTCATCATAATTCATGCAATATCAAAGAAC
63952158 ATTCATCATAATTCA-GCAATATCAAAGAAC
1 ATTCATCATAATTCATGCAATATCAAAGAAC
63952188 AT
1 AT
63952190 CTTCAACTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 17 0.53
31 15 0.47
ACGTcount: A:0.46, C:0.19, G:0.06, T:0.29
Consensus pattern (31 bp):
ATTCATCATAATTCATGCAATATCAAAGAAC
Found at i:63960090 original size:22 final size:22
Alignment explanation
Indices: 63960065--63960110 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
63960055 GAATTCAATG
* *
63960065 TTCACTTTGGTAATTGAGTTTT
1 TTCAATTTGATAATTGAGTTTT
*
63960087 TTCAATTTGATACTTGAGTTTT
1 TTCAATTTGATAATTGAGTTTT
63960109 TT
1 TT
63960111 TTTGTCCTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.09, G:0.15, T:0.57
Consensus pattern (22 bp):
TTCAATTTGATAATTGAGTTTT
Found at i:63964160 original size:30 final size:31
Alignment explanation
Indices: 63964126--63964193 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
63964116 ACTTAACAGC
* *
63964126 CAATGGCTTAAATAAAAAC-TTCCGATAGTT
1 CAATGACTTAAATAAAAACTTTCCAATAGTT
* * *
63964156 CAATGATTTAAATGAAAACTTTCTAATAGTT
1 CAATGACTTAAATAAAAACTTTCCAATAGTT
63964187 CAATGAC
1 CAATGAC
63964194 CATTTTGTAA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
30 16 0.52
31 15 0.48
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (31 bp):
CAATGACTTAAATAAAAACTTTCCAATAGTT
Found at i:63964188 original size:31 final size:30
Alignment explanation
Indices: 63964133--63964192 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 30
63964123 AGCCAATGGC
*
63964133 TTAAATAAAAACTTCCGATAGTTCAATGAT
1 TTAAATAAAAACTTCCAATAGTTCAATGAT
* *
63964163 TTAAATGAAAACTTTCTAATAGTTCAATGA
1 TTAAATAAAAAC-TTCCAATAGTTCAATGA
63964193 CCATTTTGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 11 0.42
31 15 0.58
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.35
Consensus pattern (30 bp):
TTAAATAAAAACTTCCAATAGTTCAATGAT
Found at i:63967999 original size:26 final size:28
Alignment explanation
Indices: 63967939--63968000 Score: 71
Period size: 26 Copynumber: 2.4 Consensus size: 28
63967929 GGGTTAATTT
*
63967939 TAATTTTTTAATATTTTTTTCTTCTATA
1 TAATTTTTTAATATATTTTTCTTCTATA
63967967 TAA--TTTTAAT-TAATTTTTCTT-T-TA
1 TAATTTTTTAATAT-ATTTTTCTTCTATA
63967991 TAATTTTTTA
1 TAATTTTTTA
63968001 TAACAGTCTG
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
24 5 0.17
25 2 0.07
26 20 0.67
28 3 0.10
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (28 bp):
TAATTTTTTAATATATTTTTCTTCTATA
Found at i:63969514 original size:18 final size:18
Alignment explanation
Indices: 63969491--63969528 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
63969481 TGCCAGGTGC
*
63969491 GTATCTTAGCCCTTATAT
1 GTATCTTAACCCTTATAT
63969509 GTATCTTAACCCTTATAT
1 GTATCTTAACCCTTATAT
63969527 GT
1 GT
63969529 TTCCTTTTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.21, G:0.11, T:0.45
Consensus pattern (18 bp):
GTATCTTAACCCTTATAT
Found at i:63970018 original size:58 final size:59
Alignment explanation
Indices: 63969904--63970018 Score: 135
Period size: 58 Copynumber: 2.0 Consensus size: 59
63969894 ATTTGTGTAA
* * ****
63969904 AATTTTTTTATATTGTTTCATTTAATAAAATAAAAGTTGTTTTTAATATTTTAATAGTG
1 AATTTTTTTATATTGTTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGGCAATAGTG
* *
63969963 AATTATTTTTATGTT-TTT-ATTTAATAAAATATAAGTTCTTTTGAATAAGGCAATAG
1 AATT-TTTTTATATTGTTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGGCAATAG
63970019 AAATAATGCA
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
58 31 0.66
59 7 0.15
60 9 0.19
ACGTcount: A:0.37, C:0.03, G:0.10, T:0.51
Consensus pattern (59 bp):
AATTTTTTTATATTGTTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGGCAATAGTG
Found at i:63974654 original size:44 final size:44
Alignment explanation
Indices: 63974555--63974671 Score: 141
Period size: 44 Copynumber: 2.7 Consensus size: 44
63974545 GGCTCGTACA
* * * *
63974555 ATGCCAACGTCCCAGACGTGGTTTTACA-TTTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCACAAATCG
*
63974598 ATACC-ACTGTCCCAGACAG-GGTCTTACACGTAAATCACAAATCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAAATCACAAATCG
*
63974642 ATGCCAACGTCCCAGACGTGATCTTACACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG
63974672 ATAACACACA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
42 2 0.03
43 22 0.35
44 36 0.58
45 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCACAAATCG
Found at i:63975119 original size:28 final size:25
Alignment explanation
Indices: 63975088--63975141 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 25
63975078 TTATATTTGG
63975088 TTTATTATAATAACTTTATAATATATTA
1 TTTATTAT-A-AACTTTATAAT-TATTA
*
63975116 TTTATTATAACCTTTATAATTATTA
1 TTTATTATAAACTTTATAATTATTA
63975141 T
1 T
63975142 AAAAACTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 6 0.24
26 10 0.40
27 1 0.04
28 8 0.32
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.56
Consensus pattern (25 bp):
TTTATTATAAACTTTATAATTATTA
Found at i:63975120 original size:25 final size:25
Alignment explanation
Indices: 63975092--63975141 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
63975082 ATTTGGTTTA
63975092 TTATAATAA-CTTTATAATATATTAT
1 TTATAATAACCTTTATAAT-TATTAT
*
63975117 TTATTATAACCTTTATAATTATTAT
1 TTATAATAACCTTTATAATTATTAT
63975142 AAAAACTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (25 bp):
TTATAATAACCTTTATAATTATTAT
Found at i:63975990 original size:124 final size:125
Alignment explanation
Indices: 63975767--63976038 Score: 395
Period size: 124 Copynumber: 2.2 Consensus size: 125
63975757 TAAGGCCAAA
*
63975767 CAGGAACTACTGTA-AAAAAAGAGCATCCACGTGGAAGATTTTTTCATCAATTTTGCTGACAATG
1 CAGGAACTACTGTAGAAAAAA-AGCATCCACGTGGAAGATTTTTTCATCAA-TTAGCTGACAATG
*
63975831 CATCCTACTTGAAGCGTTTTTGACACTATTTGTTCAGAACCGTCTTATCAAAATTATTTTTT
64 CATCCTACTTGAAGCATTTTTGACACTATTTGTTCAGAACCGTCTTATCAAAATTATTTTTT
* * ** * * * *
63975893 TAGGAACTACTGTAGAAAAAAAGCGTTTACGTGGGAGCTTTTTTCATCAA-TAGCTGACAGTGTA
1 CAGGAACTACTGTAGAAAAAAAGCATCCACGTGGAAGATTTTTTCATCAATTAGCTGACAATGCA
* * *
63975957 TCCTGCTTGAAGCATTTTTGACACTATTTGTTCAGAACTGTCTTCTCAAAATTATTTTTT
66 TCCTACTTGAAGCATTTTTGACACTATTTGTTCAGAACCGTCTTATCAAAATTATTTTTT
63976017 CAGGAACTACTGTAGAAAAAAA
1 CAGGAACTACTGTAGAAAAAAA
63976039 ATCCTTATTG
Statistics
Matches: 131, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
124 88 0.67
126 37 0.28
127 6 0.05
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.35
Consensus pattern (125 bp):
CAGGAACTACTGTAGAAAAAAAGCATCCACGTGGAAGATTTTTTCATCAATTAGCTGACAATGCA
TCCTACTTGAAGCATTTTTGACACTATTTGTTCAGAACCGTCTTATCAAAATTATTTTTT
Found at i:63976136 original size:33 final size:34
Alignment explanation
Indices: 63976093--63976171 Score: 90
Period size: 33 Copynumber: 2.4 Consensus size: 34
63976083 CTAAACACAA
* *
63976093 AATTATTTAAAAAAAGCTAAA-CCTAATTTAACT
1 AATTTTTTAAAAAAAGCTAAACCCTAAGTTAACT
** *
63976126 AATTTTTT-AAAAACTCTAAACCCTAAGTTAATT
1 AATTTTTTAAAAAAAGCTAAACCCTAAGTTAACT
63976159 AATTTATTTAAAA
1 AATTT-TTTAAAA
63976172 CCCCTAAAAC
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
32 10 0.26
33 22 0.58
34 3 0.08
35 3 0.08
ACGTcount: A:0.48, C:0.11, G:0.03, T:0.38
Consensus pattern (34 bp):
AATTTTTTAAAAAAAGCTAAACCCTAAGTTAACT
Found at i:63976179 original size:34 final size:34
Alignment explanation
Indices: 63976111--63976299 Score: 157
Period size: 34 Copynumber: 5.5 Consensus size: 34
63976101 AAAAAAAGCT
* *
63976111 AAACCTAATTTAACTAATTT-TTTAAAAACTCTA
1 AAACCTAATTTAATTAATTTATTTAAAAACCCTA
* * *
63976144 AACCCTAAGTTAATTAATTTATTTAAAACCCCTA
1 AAACCTAATTTAATTAATTTATTTAAAAACCCTA
** ** * * ***
63976178 AAACCTAAACCTAAACACAAAGTTATTAAAAAAAAATA
1 AAACCT-AA--TTTA-ATTAATTTATTTAAAAACCCTA
*
63976216 AAACCTAATTTAATTAATTT-TATTAAAAACTCTA
1 AAACCTAATTTAATTAATTTAT-TTAAAAACCCTA
* * *
63976250 AACCCTAAGTTAATTAATTTATTTAAAACCCCTA
1 AAACCTAATTTAATTAATTTATTTAAAAACCCTA
63976284 AAACCTAATTTAATTA
1 AAACCTAATTTAATTA
63976300 TTAAAAAAAT
Statistics
Matches: 117, Mismatches: 32, Indels: 13
0.72 0.20 0.08
Matches are distributed among these distances:
33 18 0.15
34 71 0.61
35 5 0.04
37 3 0.03
38 20 0.17
ACGTcount: A:0.48, C:0.16, G:0.02, T:0.34
Consensus pattern (34 bp):
AAACCTAATTTAATTAATTTATTTAAAAACCCTA
Found at i:63976204 original size:105 final size:106
Alignment explanation
Indices: 63976069--63976291 Score: 371
Period size: 106 Copynumber: 2.1 Consensus size: 106
63976059 TTTCCCTAAA
* **
63976069 CCCT-AAACCTAGACCTAAACACAAAATTATTTAAAAAAAGCT-AAACCTAATTTAACTAATTTT
1 CCCTAAAACCTAAACCTAAACACAAAATTA-TTAAAAAAAAATAAAACCTAATTTAACTAATTTT
63976132 -TTAAAAACTCTAAACCCTAAGTTAATTAATTTATTTAAAAC
65 ATTAAAAACTCTAAACCCTAAGTTAATTAATTTATTTAAAAC
* *
63976173 CCCTAAAACCTAAACCTAAACACAAAGTTATTAAAAAAAAATAAAACCTAATTTAATTAATTTTA
1 CCCTAAAACCTAAACCTAAACACAAAATTATTAAAAAAAAATAAAACCTAATTTAACTAATTTTA
63976238 TTAAAAACTCTAAACCCTAAGTTAATTAATTTATTTAAAAC
66 TTAAAAACTCTAAACCCTAAGTTAATTAATTTATTTAAAAC
63976279 CCCTAAAACCTAA
1 CCCTAAAACCTAA
63976292 TTTAATTATT
Statistics
Matches: 111, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
104 14 0.13
105 43 0.39
106 54 0.49
ACGTcount: A:0.49, C:0.18, G:0.02, T:0.30
Consensus pattern (106 bp):
CCCTAAAACCTAAACCTAAACACAAAATTATTAAAAAAAAATAAAACCTAATTTAACTAATTTTA
TTAAAAACTCTAAACCCTAAGTTAATTAATTTATTTAAAAC
Found at i:63978817 original size:130 final size:132
Alignment explanation
Indices: 63978453--63978841 Score: 435
Period size: 141 Copynumber: 2.9 Consensus size: 132
63978443 TGTTATGCGT
* * * *
63978453 TGTTTGAATAATACACTGTTGTGGTTTACATAATTGGGATGATGATAGCTGCAGAATGGATAATA
1 TGTTTGAATAATATACTGTTGTGGTTTACATAATTGGGATGATGGTAGCTGCAGAATGGATATTG
** * * *
63978518 ATTTGGGTTTTGATTCCAAGTCACTGATTTACCATATATTTTTATTACATACACATACATGCATG
66 ATTTGGGTTTTGATTCCAAGTCACTGATTTACC-T-T-TTTTT-TT-TGT-TATATACATG-ATA
63978583 CATACATACA
124 CATA-ATACA
* * *
63978593 TAGTTTGAATAATATACCGTTGTGGTTTACGTAATTGGGATGAGGGTAGCTGCAGAATGGATATT
1 T-GTTTGAATAATATACTGTTGTGGTTTACATAATTGGGATGATGGTAGCTGCAGAATGGATATT
*
63978658 GATTTGGGTTTTGATTCCAAGTTACTGATTTACCTTTTTTTTTTGTTATATACATG-TACAT-AT
65 GATTTGGGTTTTGATTCCAAGTCACTGATTTACCTTTTTTTTTTGTTATATACATGATACATAAT
63978721 AC-
130 ACA
* * * *
63978723 TGTTTGAATAATATACTTTTGTGTGTTAACAT-TTCTGGGATGATGGTAGCTGCAGAATGGACAT
1 TGTTTGAATAATATACTGTTGTG-GTTTACATAAT-TGGGATGATGGTAGCTGCAGAATGGATAT
* * * * * *
63978787 TGGTTTGGGGTTTGAGTCCAAGTCACTGATTCACAATTTTTTTCTTGTTATATAC
64 TGATTTGGGTTTTGATTCCAAGTCACTGATTTAC-CTTTTTTTTTTGTTATATAC
63978842 GTATATGTGT
Statistics
Matches: 218, Mismatches: 27, Indels: 17
0.83 0.10 0.06
Matches are distributed among these distances:
129 21 0.10
130 63 0.29
131 22 0.10
133 4 0.02
135 8 0.04
136 1 0.00
137 2 0.01
138 5 0.02
139 1 0.00
140 2 0.01
141 89 0.41
ACGTcount: A:0.27, C:0.12, G:0.20, T:0.41
Consensus pattern (132 bp):
TGTTTGAATAATATACTGTTGTGGTTTACATAATTGGGATGATGGTAGCTGCAGAATGGATATTG
ATTTGGGTTTTGATTCCAAGTCACTGATTTACCTTTTTTTTTTGTTATATACATGATACATAATA
CA
Found at i:63986389 original size:30 final size:26
Alignment explanation
Indices: 63986323--63986390 Score: 73
Period size: 30 Copynumber: 2.4 Consensus size: 26
63986313 TCTTTATAAA
*
63986323 TTTAAAATTTAGTCTCTATTTTTATT
1 TTTAAAATTTAGTCTCTATTTTTAAT
*
63986349 TTTAGGAATTTAGTCACTCTAATTTTTAGAT
1 TTTA-AAATTTAGT--CTCT-ATTTTTA-AT
63986380 TTTAAAATTTA
1 TTTAAAATTTA
63986391 AGCCCAATTG
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
26 4 0.12
27 8 0.24
29 4 0.12
30 13 0.38
31 5 0.15
ACGTcount: A:0.31, C:0.07, G:0.07, T:0.54
Consensus pattern (26 bp):
TTTAAAATTTAGTCTCTATTTTTAAT
Found at i:63987661 original size:31 final size:31
Alignment explanation
Indices: 63987621--63987693 Score: 137
Period size: 31 Copynumber: 2.4 Consensus size: 31
63987611 AACTTTTCGA
*
63987621 AATTGAGTGACCAAAACGTAAACTTACTAAT
1 AATTTAGTGACCAAAACGTAAACTTACTAAT
63987652 AATTTAGTGACCAAAACGTAAACTTACTAAT
1 AATTTAGTGACCAAAACGTAAACTTACTAAT
63987683 AATTTAGTGAC
1 AATTTAGTGAC
63987694 ATTAGGTGCA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.44, C:0.15, G:0.12, T:0.29
Consensus pattern (31 bp):
AATTTAGTGACCAAAACGTAAACTTACTAAT
Found at i:63991846 original size:21 final size:21
Alignment explanation
Indices: 63991822--63991868 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
63991812 CTTATGGCAT
*
63991822 ATTTTAACCTTTATTTATTT-A
1 ATTTTAACCTTGATTT-TTTGA
*
63991843 ATTTAAACCTTGATTTTTTGA
1 ATTTTAACCTTGATTTTTTGA
63991864 ATTTT
1 ATTTT
63991869 GCCCCAAACT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 3 0.14
21 19 0.86
ACGTcount: A:0.28, C:0.09, G:0.04, T:0.60
Consensus pattern (21 bp):
ATTTTAACCTTGATTTTTTGA
Found at i:63995418 original size:14 final size:14
Alignment explanation
Indices: 63995399--63995438 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
63995389 TTGATTGCTA
63995399 GTAAAATATTTTCC
1 GTAAAATATTTTCC
*
63995413 GTAAAATAATTTCC
1 GTAAAATATTTTCC
* *
63995427 GAAAAATGTTTT
1 GTAAAATATTTT
63995439 ACTGTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (14 bp):
GTAAAATATTTTCC
Found at i:63999159 original size:19 final size:19
Alignment explanation
Indices: 63999116--63999157 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
63999106 AATAAACATT
63999116 AAAAATTATTTTAAAAATA
1 AAAAATTATTTTAAAAATA
63999135 AAAAATTATTTT-AAAATA
1 AAAAATTATTTTAAAAATA
63999153 AAAAA
1 AAAAA
63999158 ATAAAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAAATTATTTTAAAAATA
Found at i:64002129 original size:27 final size:27
Alignment explanation
Indices: 64002099--64002157 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
64002089 GGAATAAAAA
64002099 GGCGGCACCAATGGTGCC-TTTCTCATT
1 GGCGGCACCAATGGTGCCATTTC-CATT
64002126 GGCGGCACCAATGGTGCCATTTCCATT
1 GGCGGCACCAATGGTGCCATTTCCATT
64002153 GGCGG
1 GGCGG
64002158 AATAGGACTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
27 27 0.87
28 4 0.13
ACGTcount: A:0.15, C:0.29, G:0.31, T:0.25
Consensus pattern (27 bp):
GGCGGCACCAATGGTGCCATTTCCATT
Found at i:64004052 original size:17 final size:17
Alignment explanation
Indices: 64004030--64004077 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
64004020 GTAATTTTAC
64004030 TATTTTAATAACTTATA
1 TATTTTAATAACTTATA
* *
64004047 TATTTTTATAA-TTA-C
1 TATTTTAATAACTTATA
*
64004062 CATTTTAATAACTTAT
1 TATTTTAATAACTTAT
64004078 TTTTATAACT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 9 0.36
16 6 0.24
17 10 0.40
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (17 bp):
TATTTTAATAACTTATA
Found at i:64004894 original size:20 final size:20
Alignment explanation
Indices: 64004865--64004902 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
64004855 GTTAAAAAAA
*
64004865 TAGAGGGACTAATTTAATAG
1 TAGAGAGACTAATTTAATAG
64004885 TAGAGAGACTAATTTAAT
1 TAGAGAGACTAATTTAAT
64004903 CATGTTCCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.05, G:0.21, T:0.32
Consensus pattern (20 bp):
TAGAGAGACTAATTTAATAG
Found at i:64006736 original size:20 final size:21
Alignment explanation
Indices: 64006697--64006742 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
64006687 AAAAATATAA
64006697 ATTTTGAATTGTTTATAAA-T
1 ATTTTGAATTGTTTATAAATT
*
64006717 ATTTTGAATTTTTTGA-AAATT
1 ATTTTGAATTGTTT-ATAAATT
64006738 ATTTT
1 ATTTT
64006743 AAAATACTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.59
Consensus pattern (21 bp):
ATTTTGAATTGTTTATAAATT
Found at i:64008110 original size:6 final size:6
Alignment explanation
Indices: 64008099--64008126 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
64008089 AATATGAAAT
64008099 AAATCC AAATCC AAATCC AAATCC AAAT
1 AAATCC AAATCC AAATCC AAATCC AAAT
64008127 AGGAATAGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.54, C:0.29, G:0.00, T:0.18
Consensus pattern (6 bp):
AAATCC
Found at i:64009317 original size:21 final size:21
Alignment explanation
Indices: 64009293--64009332 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
64009283 ACTCTCTCTT
64009293 TAACTAAAATTAAA-TCAATGG
1 TAACTAAAA-TAAATTCAATGG
*
64009314 TAACTTAAATAAATTCAAT
1 TAACTAAAATAAATTCAAT
64009333 AATTTATCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.53, C:0.10, G:0.05, T:0.33
Consensus pattern (21 bp):
TAACTAAAATAAATTCAATGG
Found at i:64009636 original size:20 final size:20
Alignment explanation
Indices: 64009611--64009712 Score: 71
Period size: 20 Copynumber: 5.5 Consensus size: 20
64009601 AAAAAATTAT
64009611 AATTCAAAAATTTTATAAAA
1 AATTCAAAAATTTTATAAAA
64009631 AATTC-AAAA-TTTAT----
1 AATTCAAAAATTTTATAAAA
* * *
64009645 ATTTTAAAAAATTTATAAAA
1 AATTCAAAAATTTTATAAAA
*
64009665 AATTCTAAAAA-TATATAAAA
1 AATTC-AAAAATTTTATAAAA
64009685 AATT--AAAATTTTA-AAAA
1 AATTCAAAAATTTTATAAAA
* *
64009702 TATTCTAAAAT
1 AATTCAAAAAT
64009713 CGTAATTGTG
Statistics
Matches: 65, Mismatches: 7, Indels: 21
0.70 0.08 0.23
Matches are distributed among these distances:
14 3 0.05
15 4 0.06
16 5 0.08
17 11 0.17
18 8 0.12
19 9 0.14
20 20 0.31
21 5 0.08
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (20 bp):
AATTCAAAAATTTTATAAAA
Found at i:64009666 original size:35 final size:35
Alignment explanation
Indices: 64009602--64009682 Score: 110
Period size: 34 Copynumber: 2.3 Consensus size: 35
64009592 AAAATTACAA
*
64009602 AAAAATTATAATTCAAAAATTTTATAAAAAATTC-
1 AAAAATTATAATTCAAAAAATTTATAAAAAATTCT
* * *
64009636 AAAATTTATATTTTAAAAAATTTATAAAAAATTCT
1 AAAAATTATAATTCAAAAAATTTATAAAAAATTCT
64009671 AAAAATATATAA
1 AAAAAT-TATAA
64009683 AAAATTAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
34 30 0.77
35 5 0.13
36 4 0.10
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (35 bp):
AAAAATTATAATTCAAAAAATTTATAAAAAATTCT
Found at i:64009807 original size:16 final size:16
Alignment explanation
Indices: 64009788--64009818 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
64009778 TTTGAAATTT
64009788 TTTCAAATATATATGG
1 TTTCAAATATATATGG
*
64009804 TTTCAAATTTATATG
1 TTTCAAATATATATG
64009819 CTCTAACATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.48
Consensus pattern (16 bp):
TTTCAAATATATATGG
Found at i:64020994 original size:14 final size:16
Alignment explanation
Indices: 64020955--64020994 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 16
64020945 TAAATTTTTA
*
64020955 AAATATAATATACAAT
1 AAATTTAATATACAAT
64020971 AAATTT-ATATA-AAT
1 AAATTTAATATACAAT
64020985 -AATTTAATAT
1 AAATTTAATAT
64020995 TTTTAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 5 0.23
14 7 0.32
15 5 0.23
16 5 0.23
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (16 bp):
AAATTTAATATACAAT
Found at i:64023722 original size:29 final size:28
Alignment explanation
Indices: 64023679--64023734 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
64023669 CCAAACATTT
*
64023679 TTTCAAACTTAATATTTTTATTCAAACCC
1 TTTCAAACTTAATATATTT-TTCAAACCC
* *
64023708 TTTCAAATTTCATATATTTTTCAAACC
1 TTTCAAACTTAATATATTTTTCAAACC
64023735 TAGAAAGGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 8 0.33
29 16 0.67
ACGTcount: A:0.34, C:0.20, G:0.00, T:0.46
Consensus pattern (28 bp):
TTTCAAACTTAATATATTTTTCAAACCC
Found at i:64024563 original size:14 final size:14
Alignment explanation
Indices: 64024544--64024571 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
64024534 GCAGTCATGC
64024544 CTTGAAGACTCCAT
1 CTTGAAGACTCCAT
64024558 CTTGAAGACTCCAT
1 CTTGAAGACTCCAT
64024572 TTTGCTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (14 bp):
CTTGAAGACTCCAT
Found at i:64027589 original size:14 final size:16
Alignment explanation
Indices: 64027550--64027589 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 16
64027540 TAAATTTTAA
*
64027550 AAATATAATATACAAT
1 AAATTTAATATACAAT
64027566 AAATTT-ATATA-AAT
1 AAATTTAATATACAAT
64027580 -AATTTAATAT
1 AAATTTAATAT
64027590 TTTTTTAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 5 0.23
14 7 0.32
15 5 0.23
16 5 0.23
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (16 bp):
AAATTTAATATACAAT
Found at i:64030320 original size:29 final size:28
Alignment explanation
Indices: 64030277--64030332 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
64030267 CCAAACATTT
*
64030277 TTTCAAACTTAATATTTTTATTCAAACCC
1 TTTCAAACTTAATATATTT-TTCAAACCC
* *
64030306 TTTCAAATTTCATATATTTTTCAAACC
1 TTTCAAACTTAATATATTTTTCAAACC
64030333 TAGAAAGGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 8 0.33
29 16 0.67
ACGTcount: A:0.34, C:0.20, G:0.00, T:0.46
Consensus pattern (28 bp):
TTTCAAACTTAATATATTTTTCAAACCC
Found at i:64031160 original size:14 final size:14
Alignment explanation
Indices: 64031141--64031168 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
64031131 GCAGTCATGC
64031141 CTTGAAGACTCCAT
1 CTTGAAGACTCCAT
64031155 CTTGAAGACTCCAT
1 CTTGAAGACTCCAT
64031169 TTTGCTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (14 bp):
CTTGAAGACTCCAT
Found at i:64034180 original size:14 final size:16
Alignment explanation
Indices: 64034141--64034180 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 16
64034131 TAAATTTTAA
*
64034141 AAATATAATATACAAT
1 AAATTTAATATACAAT
64034157 AAATTT-ATATA-AAT
1 AAATTTAATATACAAT
64034171 -AATTTAATAT
1 AAATTTAATAT
64034181 TTTTTTAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 5 0.23
14 7 0.32
15 5 0.23
16 5 0.23
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (16 bp):
AAATTTAATATACAAT
Found at i:64036912 original size:29 final size:28
Alignment explanation
Indices: 64036869--64036924 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
64036859 CCAAACATTT
*
64036869 TTTCAAACTTAATATTTTTATTCAAACCC
1 TTTCAAACTTAATATATTT-TTCAAACCC
* *
64036898 TTTCAAATTTCATATATTTTTCAAACC
1 TTTCAAACTTAATATATTTTTCAAACC
64036925 TAGAAAGGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 8 0.33
29 16 0.67
ACGTcount: A:0.34, C:0.20, G:0.00, T:0.46
Consensus pattern (28 bp):
TTTCAAACTTAATATATTTTTCAAACCC
Found at i:64037752 original size:14 final size:14
Alignment explanation
Indices: 64037733--64037760 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
64037723 GCAGTCATGC
64037733 CTTGAAGACTCCAT
1 CTTGAAGACTCCAT
64037747 CTTGAAGACTCCAT
1 CTTGAAGACTCCAT
64037761 TTTGCTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (14 bp):
CTTGAAGACTCCAT
Found at i:64042093 original size:48 final size:48
Alignment explanation
Indices: 64042036--64042139 Score: 181
Period size: 48 Copynumber: 2.2 Consensus size: 48
64042026 TCGGATGGGT
* *
64042036 GAACGAGATCTACAGTGCACAGGTGTAGGTGACCTGCGCCGATAAGGA
1 GAACGAGATCTACAGCGCACAGGTGTAGGTGACCCGCGCCGATAAGGA
*
64042084 GAACGAGATCTACGGCGCACAGGTGTAGGTGACCCGCGCCGATAAGGA
1 GAACGAGATCTACAGCGCACAGGTGTAGGTGACCCGCGCCGATAAGGA
64042132 GAACGAGA
1 GAACGAGA
64042140 CTGAGATCTA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.30, C:0.22, G:0.35, T:0.13
Consensus pattern (48 bp):
GAACGAGATCTACAGCGCACAGGTGTAGGTGACCCGCGCCGATAAGGA
Found at i:64046561 original size:29 final size:30
Alignment explanation
Indices: 64046523--64046593 Score: 92
Period size: 29 Copynumber: 2.4 Consensus size: 30
64046513 TCTTCACAAA
**
64046523 TTTAAAATTTAGTCCCTGTA-TTTTT-AAT
1 TTTAAAATTTAGTCCCTACACTTTTTAAAT
*
64046551 TTTAGAAATTTAGTCTCTACACTTTTTAAAT
1 TTTA-AAATTTAGTCCCTACACTTTTTAAAT
64046582 TTTAAAATTTAG
1 TTTAAAATTTAG
64046594 GTTCAACAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 4 0.11
29 13 0.35
30 13 0.35
31 7 0.19
ACGTcount: A:0.32, C:0.10, G:0.07, T:0.51
Consensus pattern (30 bp):
TTTAAAATTTAGTCCCTACACTTTTTAAAT
Found at i:64051186 original size:209 final size:208
Alignment explanation
Indices: 64050780--64051591 Score: 935
Period size: 209 Copynumber: 3.9 Consensus size: 208
64050770 ATGCATTAGT
* * * ** *
64050780 TATGGGTACTTAAAGAAAAATGAGGAGTCCAAGCAATATAGCTTGTTGGTAATTTCTAATCTATG
1 TATGGATACTTAAAGAAAAATGAGGAGTTCAAGCAATATAGCTAGTCAGTAATTTCTAAGCTATG
* * * * *
64050845 AGAATCTAATGGAAAACCACATTGTGTATTTTGACATTTGAATTTATACTTCTTGGCCTTCATTG
66 AGAAACTAAT-GAAAACCACATTGTGCATTTTGATATTTGAATTTATAGTT-TTGACCTTCATTG
* * * * * *
64050910 CTAGTTAGCGGTGTTACTGGGACTTGGGTGTGAGCTTTGGATAGCCTATATGTCTGATGTACATT
129 CTAGTTAGCTGTGTTACCGGGACTTGGGTGTGAGCGTTGGATAGCCTATATGTCTAATATGCATT
64050975 AGATATGGGTGCTAGA
194 AGATAT-GGTGCTAGA
* * *
64050991 TATGGATACTTCAAGAAAAAT-AGGAGTTCAAGCAGTATAGCTAGTCAGTGATTTCTAAGCTATG
1 TATGGATACTTAAAGAAAAATGAGGAGTTCAAGCAATATAGCTAGTCAGTAATTTCTAAGCTATG
* * * *
64051055 AGAAAGTAATGAAAACCACATTGTGCATTTTGATACTTGACTTTATAGGTTTTGACCTTCAATGC
66 AGAAACTAATGAAAACCACATTGTGCATTTTGATATTTGAATTTATA-GTTTTGACCTTCATTGC
* * *
64051120 TAGTTAGCTGTGTTACCGGGACTTGGGTGTGAGTGTTGCG-TAGCCTACATGTCCAATATGCATT
130 TAGTTAGCTGTGTTACCGGGACTTGGGTGTGAGCGTTG-GATAGCCTATATGTCTAATATGCATT
*
64051184 AGATATTGGTGTTAG-
194 AGATA-TGGTGCTAGA
* * * *
64051199 TAAGGATACGTAAAGAAAAATGAGGAG-TCTGAGCAATATAGCTAGTCAGTAATTTCGAAGCTAT
1 TATGGATACTTAAAGAAAAATGAGGAGTTC-AAGCAATATAGCTAGTCAGTAATTTCTAAGCTAT
* * * * *
64051263 GAGAAACTAATG--AACCACATTGTGCATTTTGATATTTGAATCTATAGTTTTCAGTCTTTAGTG
65 GAGAAACTAATGAAAACCACATTGTGCATTTTGATATTTGAATTTATAGTTTTGA-CCTTCATTG
* *
64051326 CTAGTTAACTGTGTTACCGGGACTTGGGTGTGAGCATTGGATAGCCTATATGTCTAATATGC---
129 CTAGTTAGCTGTGTTACCGGGACTTGGGTGTGAGCGTTGGATAGCCTATATGTCTAATATGCATT
64051388 ----A---T-C-AGA
194 AGATATGGTGCTAGA
* *** * *
64051394 TATGGGTACTTAAAGAAAAATGAGGAGTTTGCGCAATATAGCTAGTCGGTAATCTCTAAGCTATG
1 TATGGATACTTAAAGAAAAATGAGGAGTTCAAGCAATATAGCTAGTCAGTAATTTCTAAGCTATG
* *
64051459 AAAAACTAATGAAGAACCACATTGTGCATTTTGGTATTTGAATTTATAGTTTTTGACCTTCATTG
66 AGAAACTAATGAA-AACCACATTGTGCATTTTGATATTTGAATTTATAG-TTTTGACCTTCATTG
* * *
64051524 CTATTTAG-TCATGTTACCGGGACTTGGGTGTGA-CGTTGGATAGCCCATATGTCTAATATGCAT
129 CTAGTTAGCT-GTGTTACCGGGACTTGGGTGTGAGCGTTGGATAGCCTATATGTCTAATATGCAT
64051587 TAGAT
193 TAGAT
64051592 GTTTGTACTT
Statistics
Matches: 511, Mismatches: 69, Indels: 49
0.81 0.11 0.08
Matches are distributed among these distances:
194 2 0.00
195 65 0.13
196 2 0.00
197 27 0.05
198 67 0.13
199 5 0.01
200 1 0.00
206 7 0.01
207 92 0.18
208 20 0.04
209 156 0.31
210 48 0.09
211 19 0.04
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34
Consensus pattern (208 bp):
TATGGATACTTAAAGAAAAATGAGGAGTTCAAGCAATATAGCTAGTCAGTAATTTCTAAGCTATG
AGAAACTAATGAAAACCACATTGTGCATTTTGATATTTGAATTTATAGTTTTGACCTTCATTGCT
AGTTAGCTGTGTTACCGGGACTTGGGTGTGAGCGTTGGATAGCCTATATGTCTAATATGCATTAG
ATATGGTGCTAGA
Found at i:64051373 original size:207 final size:205
Alignment explanation
Indices: 64050786--64051698 Score: 862
Period size: 209 Copynumber: 4.5 Consensus size: 205
64050776 TAGTTATGGG
* * ** * *
64050786 TACTTAAAGAAAAATGAGGAGTCCAAGCAATATAGCTTGTTGGTAATTTCTAATCTATGAGAATC
1 TACTTAAAGAAAAATGAGGAGTCTAAGCAATATAGCTAGTCAGTAATTTCTAAGCTATGAGAAAC
* * * * *
64050851 TAATGGAAAACCACATTGTGTATTTTGACATTTGAATTTATACTTCTTGGCCTTCATTGCTAGTT
66 TAATAG-AAACCACATTGTGCATTTTGATATTTGAATTTATAGTT-TTAGCCTTCATTGCTAGTT
* * * * * * *
64050916 AGCGGTGTTACTGGGACTTGGGTGTGAGCTTTGGATAGCCTATATGTCTGATGTACATTAGATAT
129 AACTGTGTTACCGGGACTTGGGTGTGAGCGTTGGATAGCCTATATGTCTAATATGCATTAGATAT
64050981 GGGTGCTAGATATGGA
194 -GGTG-TAG-TA-GGA
* * *
64050997 TACTTCAAGAAAAAT-AGGAGT-TCAAGCAGTATAGCTAGTCAGTGATTTCTAAGCTATGAGAAA
1 TACTTAAAGAAAAATGAGGAGTCT-AAGCAATATAGCTAGTCAGTAATTTCTAAGCTATGAGAAA
* * * *
64051060 GTAAT-GAAAACCACATTGTGCATTTTGATACTTGACTTTATAGGTTTT-GACCTTCAATGCTAG
65 CTAATAG-AAACCACATTGTGCATTTTGATATTTGAATTTATA-GTTTTAG-CCTTCATTGCTAG
* * * *
64051123 TTAGCTGTGTTACCGGGACTTGGGTGTGAGTGTTGCG-TAGCCTACATGTCCAATATGCATTAGA
127 TTAACTGTGTTACCGGGACTTGGGTGTGAGCGTTG-GATAGCCTATATGTCTAATATGCATTAGA
64051187 TATTGGTGTTAGTAAGGA
191 TA-TGGTG-TAGT-AGGA
* * *
64051205 TACGTAAAGAAAAATGAGGAGTCTGAGCAATATAGCTAGTCAGTAATTTCGAAGCTATGAGAAAC
1 TACTTAAAGAAAAATGAGGAGTCTAAGCAATATAGCTAGTCAGTAATTTCTAAGCTATGAGAAAC
* * * *
64051270 TAAT-G-AACCACATTGTGCATTTTGATATTTGAATCTATAGTTTTCAGTCTTTAGTGCTAGTTA
66 TAATAGAAACCACATTGTGCATTTTGATATTTGAATTTATAGTTTT-AGCCTTCATTGCTAGTTA
* *
64051333 ACTGTGTTACCGGGACTTGGGTGTGAGCATTGGATAGCCTATATGTCTAATATGCATCAGATA--
130 ACTGTGTTACCGGGACTTGGGTGTGAGCGTTGGATAGCCTATATGTCTAATATGCATTAGATATG
64051396 ---T-G--GG-
195 GTGTAGTAGGA
* ** * * *
64051400 TACTTAAAGAAAAATGAGGAGTTTGCGCAATATAGCTAGTCGGTAATCTCTAAGCTATGAAAAAC
1 TACTTAAAGAAAAATGAGGAGTCTAAGCAATATAGCTAGTCAGTAATTTCTAAGCTATGAGAAAC
* *
64051465 TAAT-GAAGAACCACATTGTGCATTTTGGTATTTGAATTTATAGTTTTTGACCTTCATTGCTA-T
66 TAATAG-A-AACCACATTGTGCATTTTGATATTTGAATTTATAGTTTTAG-CCTTCATTGCTAGT
* * * *
64051528 TTAGTCATGTTACCGGGACTTGGGTGTGA-CGTTGGATAGCCCATATGTCTAATATGCATTAG--
128 TAACT-GTGTTACCGGGACTTGGGTGTGAGCGTTGGATAGCCTATATGTCTAATATGCATTAGAT
64051590 AT-GT-T--T--G-
192 ATGGTGTAGTAGGA
* * * ** *
64051597 TACTTCAAGAAAAATGAGGAGTCCAA--ATATAATAGCAAGTTGGTAATTTCTAAGCTATGGGAA
1 TACTTAAAGAAAAATGAGGAGTCTAAGCA-AT-ATAGCTAGTCAGTAATTTCTAAGCTATGAGAA
* * * *
64051660 ACTAAT-GAATAACCACATTTTGCACTCTGCTATTTGAAT
64 ACTAATAG-A-AACCACATTGTGCATTTTGATATTTGAAT
64051699 GACATTCAAT
Statistics
Matches: 601, Mismatches: 79, Indels: 58
0.81 0.11 0.08
Matches are distributed among these distances:
195 65 0.11
196 4 0.01
197 118 0.20
198 69 0.11
199 1 0.00
200 1 0.00
206 6 0.01
207 99 0.16
208 19 0.03
209 157 0.26
210 48 0.08
211 14 0.02
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (205 bp):
TACTTAAAGAAAAATGAGGAGTCTAAGCAATATAGCTAGTCAGTAATTTCTAAGCTATGAGAAAC
TAATAGAAACCACATTGTGCATTTTGATATTTGAATTTATAGTTTTAGCCTTCATTGCTAGTTAA
CTGTGTTACCGGGACTTGGGTGTGAGCGTTGGATAGCCTATATGTCTAATATGCATTAGATATGG
TGTAGTAGGA
Found at i:64051664 original size:197 final size:195
Alignment explanation
Indices: 64050641--64051698 Score: 993
Period size: 197 Copynumber: 5.3 Consensus size: 195
64050631 GTAGTTTTTC
* * *
64050641 AGCTATGAGAAGCTAATGTAGAACCACATTGTGCATTTTGATATTTGACTTTATAGTTTTTGACC
1 AGCTATGAGAAACTAATGAAGAACCACATTGTGCATTTTGATATTTGAATTTATAG-TTTTGACC
* * * * *
64050706 TTCATTGCTGGTTAGCTGTG-TACAGGGACTTGGGTGTGAGCGTTGAATAGCCTATATGTCCAAT
65 TTCAATGCTAGTTAGCTGTGTTACCGGGACTTGGGTGTGAGCGTTGGATAGCCTATATGTCTAAT
* * ** * **
64050770 ATGCATTAGTTATGGGTACTTAAAGAAAAATGAGGAGTCCAAGCAATATAGCTTGTTGGTAATTT
130 ATGCATTAGATGTTTGTACTTAAAGAAAAATGAGGAGTCCAA--AATATAGCTAGTCAGTAATTT
64050835 CTA
193 CTA
* * * * * *
64050838 ATCTATGAGAATCTAATGGAA-AACCACATTGTGTATTTTGACATTTGAATTTATACTTCTTGGC
1 AGCTATGAGAAACTAAT-GAAGAACCACATTGTGCATTTTGATATTTGAATTTATAGTT-TTGAC
* * * * *
64050902 CTTCATTGCTAGTTAGCGGTGTTACTGGGACTTGGGTGTGAGCTTTGGATAGCCTATATGTCTGA
64 CTTCAATGCTAGTTAGCTGTGTTACCGGGACTTGGGTGTGAGCGTTGGATAGCCTATATGTCTAA
* * * * *
64050967 TGTACATTAGATATGGGTGCTAGATATGGATACTTCAAGAAAAAT-AGGAGTTCAAGCAGTATAG
129 TATGCATTAG--A----TG-T---T-T-G-TACTTAAAGAAAAATGAGGAGTCCAA--AATATAG
*
64051031 CTAGTCAGTGATTTCTA
179 CTAGTCAGTAATTTCTA
* * *
64051048 AGCTATGAGAAAGTAATGAA-AACCACATTGTGCATTTTGATACTTGACTTTATAGGTTTTGACC
1 AGCTATGAGAAACTAATGAAGAACCACATTGTGCATTTTGATATTTGAATTTATA-GTTTTGACC
* * *
64051112 TTCAATGCTAGTTAGCTGTGTTACCGGGACTTGGGTGTGAGTGTTGCG-TAGCCTACATGTCCAA
65 TTCAATGCTAGTTAGCTGTGTTACCGGGACTTGGGTGTGAGCGTTG-GATAGCCTATATGTCTAA
* * *
64051176 TATGCATTAGATATTGGTGTTAGTAAGGATACGTAAAGAAAAATGAGGAGTCTGAGCAATATAGC
129 TATGCATTAG--A----TGTT--T---G-TACTTAAAGAAAAATGAGGAGTC-CA-AAATATAGC
*
64051241 TAGTCAGTAATTTCGA
180 TAGTCAGTAATTTCTA
* * *
64051257 AGCTATGAGAAACTAAT---GAACCACATTGTGCATTTTGATATTTGAATCTATAGTTTTCAGTC
1 AGCTATGAGAAACTAATGAAGAACCACATTGTGCATTTTGATATTTGAATTTATAGTTTTGA-CC
* * * *
64051319 TTTAGTGCTAGTTAACTGTGTTACCGGGACTTGGGTGTGAGCATTGGATAGCCTATATGTCTAAT
65 TTCAATGCTAGTTAGCTGTGTTACCGGGACTTGGGTGTGAGCGTTGGATAGCCTATATGTCTAAT
* * ** * ** * *
64051384 ATGCATCAGATATGGGTACTTAAAGAAAAATGAGGAGTTTGCGCAATATAGCTAGTCGGTAATCT
130 ATGCATTAGATGTTTGTACTTAAAGAAAAATGAGGAG--TCCAAAATATAGCTAGTCAGTAATTT
64051449 CTA
193 CTA
* *
64051452 AGCTATGAAAAACTAATGAAGAACCACATTGTGCATTTTGGTATTTGAATTTATAGTTTTTGACC
1 AGCTATGAGAAACTAATGAAGAACCACATTGTGCATTTTGATATTTGAATTTATAG-TTTTGACC
* * * *
64051517 TTCATTGCTATTTAG-TCATGTTACCGGGACTTGGGTGTGA-CGTTGGATAGCCCATATGTCTAA
65 TTCAATGCTAGTTAGCT-GTGTTACCGGGACTTGGGTGTGAGCGTTGGATAGCCTATATGTCTAA
* * **
64051580 TATGCATTAGATGTTTGTACTTCAAGAAAAATGAGGAGTCCAAATATAATAGCAAGTTGGTAATT
129 TATGCATTAGATGTTTGTACTTAAAGAAAAATGAGGAGTCCAAA-AT-ATAGCTAGTCAGTAATT
64051645 TCTA
192 TCTA
* * * * * *
64051649 AGCTATGGGAAACTAATGAATAACCACATTTTGCACTCTGCTATTTGAAT
1 AGCTATGAGAAACTAATGAAGAACCACATTGTGCATTTTGATATTTGAAT
64051699 GACATTCAAT
Statistics
Matches: 714, Mismatches: 111, Indels: 72
0.80 0.12 0.08
Matches are distributed among these distances:
195 61 0.09
196 5 0.01
197 186 0.26
198 116 0.16
199 5 0.01
201 2 0.00
204 1 0.00
205 3 0.00
206 8 0.01
207 96 0.13
208 17 0.02
209 151 0.21
210 49 0.07
211 14 0.02
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (195 bp):
AGCTATGAGAAACTAATGAAGAACCACATTGTGCATTTTGATATTTGAATTTATAGTTTTGACCT
TCAATGCTAGTTAGCTGTGTTACCGGGACTTGGGTGTGAGCGTTGGATAGCCTATATGTCTAATA
TGCATTAGATGTTTGTACTTAAAGAAAAATGAGGAGTCCAAAATATAGCTAGTCAGTAATTTCTA
Found at i:64058463 original size:62 final size:62
Alignment explanation
Indices: 64058366--64058492 Score: 254
Period size: 62 Copynumber: 2.0 Consensus size: 62
64058356 AAGTAATTTT
64058366 TTTAGGAACTGAGAAATAGATAAATATGGTGGTTCTAAGCTATAAACAAACTTTCTATTGGA
1 TTTAGGAACTGAGAAATAGATAAATATGGTGGTTCTAAGCTATAAACAAACTTTCTATTGGA
64058428 TTTAGGAACTGAGAAATAGATAAATATGGTGGTTCTAAGCTATAAACAAACTTTCTATTGGA
1 TTTAGGAACTGAGAAATAGATAAATATGGTGGTTCTAAGCTATAAACAAACTTTCTATTGGA
64058490 TTT
1 TTT
64058493 GTTAAGCTTT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 65 1.00
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (62 bp):
TTTAGGAACTGAGAAATAGATAAATATGGTGGTTCTAAGCTATAAACAAACTTTCTATTGGA
Found at i:64062119 original size:8 final size:7
Alignment explanation
Indices: 64062094--64062118 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
64062084 ATCTTCATAT
64062094 TTTTGAA
1 TTTTGAA
64062101 TTTTGAA
1 TTTTGAA
64062108 TTTTGAA
1 TTTTGAA
64062115 TTTT
1 TTTT
64062119 TAATGGGAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (7 bp):
TTTTGAA
Found at i:64063241 original size:30 final size:30
Alignment explanation
Indices: 64063178--64063241 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 30
64063168 TCCGGATGAA
*
64063178 AAAAGTACAAAGATTAAATTAATCAATTCT
1 AAAAGTACAAAGATTAAATTAATCAAATCT
*
64063208 AAAAGTA-AAACGATTAAAATTGATCAAAT-T
1 AAAAGTACAAA-GATT-AAATTAATCAAATCT
64063238 AAAA
1 AAAA
64063242 ATATAGACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 3 0.10
30 16 0.53
31 11 0.37
ACGTcount: A:0.58, C:0.08, G:0.08, T:0.27
Consensus pattern (30 bp):
AAAAGTACAAAGATTAAATTAATCAAATCT
Found at i:64067736 original size:20 final size:20
Alignment explanation
Indices: 64067706--64067753 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
64067696 TCATTTAAAT
64067706 TTAATTATAAAATATTTTATA
1 TTAA-TATAAAATATTTTATA
* *
64067727 TTAATATAAACTTTTTTATA
1 TTAATATAAAATATTTTATA
*
64067747 TTTATAT
1 TTAATAT
64067754 TATTTTTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
TTAATATAAAATATTTTATA
Found at i:64071353 original size:9 final size:10
Alignment explanation
Indices: 64071331--64071362 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
64071321 GAGGATAGTC
64071331 AAATTTTCAA
1 AAATTTTCAA
64071341 AAATTTT-AA
1 AAATTTTCAA
64071350 AAATTTTCAA
1 AAATTTTCAA
64071360 AAA
1 AAA
64071363 AAAAAAAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 9 0.43
10 12 0.57
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (10 bp):
AAATTTTCAA
Found at i:64072320 original size:17 final size:19
Alignment explanation
Indices: 64072290--64072330 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
64072280 AAGCTTGAAA
*
64072290 TTTTAAAATAAATT-TATT
1 TTTTTAAATAAATTGTATT
*
64072308 TTTTTAAAT-AATTGTCTT
1 TTTTTAAATAAATTGTATT
64072326 TTTTT
1 TTTTT
64072331 TTCAATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (19 bp):
TTTTTAAATAAATTGTATT
Found at i:64076309 original size:31 final size:31
Alignment explanation
Indices: 64076261--64076347 Score: 95
Period size: 31 Copynumber: 2.8 Consensus size: 31
64076251 ATGAACTTTG
* * *
64076261 AACTTTGATT-TGGTTCAATTATATATATGA
1 AACTTTGATTGTGGTTCAAATATACACATGA
*
64076291 AACTTTGATTGTGGTTCAAATGTACACATGA
1 AACTTTGATTGTGGTTCAAATATACACATGA
* * * *
64076322 AAATTTCATTGTGATTCAACTATACA
1 AACTTTGATTGTGGTTCAAATATACA
64076348 ATATATATTT
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
30 10 0.21
31 37 0.79
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.40
Consensus pattern (31 bp):
AACTTTGATTGTGGTTCAAATATACACATGA
Found at i:64078084 original size:21 final size:21
Alignment explanation
Indices: 64078038--64078085 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
64078028 GATCATTTTT
64078038 AATTTTTTAATTTTCTTTATA
1 AATTTTTTAATTTTCTTTATA
* *
64078059 TATTTTTTAGATTTTTTTTA-A
1 AATTTTTTA-ATTTTCTTTATA
64078080 AATTTT
1 AATTTT
64078086 AGGATTTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (21 bp):
AATTTTTTAATTTTCTTTATA
Found at i:64078116 original size:24 final size:25
Alignment explanation
Indices: 64078077--64078126 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
64078067 AGATTTTTTT
*
64078077 TAAAATTTTAGGATTTTTAAAAATA
1 TAAAATTTTAGAATTTTTAAAAATA
*
64078102 TAAAA-TTTAGAATTTTTATAAATA
1 TAAAATTTTAGAATTTTTAAAAATA
64078126 T
1 T
64078127 TTTAATTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 18 0.78
25 5 0.22
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.46
Consensus pattern (25 bp):
TAAAATTTTAGAATTTTTAAAAATA
Found at i:64078133 original size:18 final size:20
Alignment explanation
Indices: 64078106--64078153 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 20
64078096 AAAATATAAA
* *
64078106 ATTTAGAATTTTTATAAA-T
1 ATTTTGAATTTTTAAAAATT
64078125 ATTTT-AA-TTTTAAAAATT
1 ATTTTGAATTTTTAAAAATT
64078143 ATTTTGAATTT
1 ATTTTGAATTT
64078154 ATTTTTTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
17 8 0.33
18 8 0.33
19 6 0.25
20 2 0.08
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (20 bp):
ATTTTGAATTTTTAAAAATT
Found at i:64085536 original size:30 final size:31
Alignment explanation
Indices: 64085494--64085598 Score: 92
Period size: 31 Copynumber: 3.5 Consensus size: 31
64085484 TGGAAGAGCC
*
64085494 TAATTGAAATATTTAAAAATTTTCA-AAGGTT
1 TAATTAAAATATTTAAAAATTTT-AGAAGGTT
* * *
64085525 TAA-TAATATATTTCAAAAACTTTAGAGGGTT
1 TAATTAAAATATTT-AAAAATTTTAGAAGGTT
* * * *
64085556 TAATTAAAATCTTCAAAAATTTT-GAGGGTA
1 TAATTAAAATATTTAAAAATTTTAGAAGGTT
64085586 TAATTAAAA-ATTT
1 TAATTAAAATATTT
64085599 TTTTAAAAAT
Statistics
Matches: 60, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
29 2 0.03
30 24 0.40
31 27 0.45
32 7 0.12
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (31 bp):
TAATTAAAATATTTAAAAATTTTAGAAGGTT
Found at i:64085556 original size:31 final size:29
Alignment explanation
Indices: 64085521--64085594 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 29
64085511 AATTTTCAAA
64085521 GGTTTAATAATATAT-TTCAAAAACTTTAGAG
1 GGTTTAATAA-A-ATCTTCAAAAA-TTTAGAG
*
64085552 GGTTTAATTAAAATCTTCAAAAATTTTGAG
1 GGTTTAA-TAAAATCTTCAAAAATTTAGAG
*
64085582 GGTATAATTAAAA
1 GGTTTAA-TAAAA
64085595 ATTTTTTTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
30 20 0.51
31 16 0.41
32 3 0.08
ACGTcount: A:0.43, C:0.05, G:0.14, T:0.38
Consensus pattern (29 bp):
GGTTTAATAAAATCTTCAAAAATTTAGAG
Found at i:64085596 original size:31 final size:31
Alignment explanation
Indices: 64085536--64085594 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
64085526 AATAATATAT
*
64085536 TTCAAAAACTTTAGAGGGTTTAATTAAAATC
1 TTCAAAAACTTTAGAGGGTATAATTAAAATC
*
64085567 TTCAAAAA-TTTTGAGGGTATAATTAAAA
1 TTCAAAAACTTTAGAGGGTATAATTAAAA
64085595 ATTTTTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.44, C:0.07, G:0.14, T:0.36
Consensus pattern (31 bp):
TTCAAAAACTTTAGAGGGTATAATTAAAATC
Found at i:64087325 original size:29 final size:29
Alignment explanation
Indices: 64087293--64087386 Score: 82
Period size: 29 Copynumber: 3.1 Consensus size: 29
64087283 AAACTGGGCC
64087293 AAAAAAAAGTTTAGGTACCAAATTAGAAA
1 AAAAAAAAGTTTAGGTACCAAATTAGAAA
* * * **
64087322 AAAAATGTCAAGTTCAGGTACC-AATTTGAGCC
1 AAAAA---AAAGTTTAGGTACCAAATTAGA-AA
*
64087354 CAAAAAAAGTTTAGGTACCAAATTAAGAAA
1 AAAAAAAAGTTTAGGTACCAAATT-AGAAA
64087384 AAA
1 AAA
64087387 TGTCAAGTTT
Statistics
Matches: 47, Mismatches: 12, Indels: 11
0.67 0.17 0.16
Matches are distributed among these distances:
29 17 0.36
30 6 0.13
31 8 0.17
32 16 0.34
ACGTcount: A:0.52, C:0.12, G:0.15, T:0.21
Consensus pattern (29 bp):
AAAAAAAAGTTTAGGTACCAAATTAGAAA
Found at i:64087334 original size:61 final size:60
Alignment explanation
Indices: 64087236--64087395 Score: 248
Period size: 61 Copynumber: 2.6 Consensus size: 60
64087226 TAAACCTCAG
* *
64087236 AAAAAGCTTAGGTACCAAATTAAGAAAAAATGTCAAGTTCAGATACCAAACTGGGCCAAA
1 AAAAAGTTTAGGTACCAAATTAAGAAAAAATGTCAAGTTCAGATACCAAACTGAGCCAAA
* * ** *
64087296 AAAAAGTTTAGGTACCAAATTAGAAAAAAAATGTCAAGTTCAGGTACCAATTTGAGCCCAA
1 AAAAAGTTTAGGTACCAAATTA-AGAAAAAATGTCAAGTTCAGATACCAAACTGAGCCAAA
64087357 AAAAAGTTTAGGTACCAAATTAAGAAAAAATGTCAAGTT
1 AAAAAGTTTAGGTACCAAATTAAGAAAAAATGTCAAGTT
64087396 TAAGTACCAG
Statistics
Matches: 91, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
60 37 0.41
61 54 0.59
ACGTcount: A:0.48, C:0.14, G:0.16, T:0.22
Consensus pattern (60 bp):
AAAAAGTTTAGGTACCAAATTAAGAAAAAATGTCAAGTTCAGATACCAAACTGAGCCAAA
Found at i:64087403 original size:60 final size:60
Alignment explanation
Indices: 64087212--64087404 Score: 235
Period size: 61 Copynumber: 3.2 Consensus size: 60
64087202 ATTTAATAAA
* * * * *
64087212 TTTAGGTACCAATTTAAACCTCAGAAAAAGCTTAGGTACCAAATTAAGAAAAAATGTCAAG
1 TTTAAGTACCAATTTGAGCC-CAAAAAAAGTTTAGGTACCAAATTAAGAAAAAATGTCAAG
* ** * * *
64087273 -TTCAGATACCAAACTGGGCCAAAAAAAAGTTTAGGTACCAAATTAGAAAAAAAATGTCAAG
1 TTTAAG-TACCAATTTGAGCCCAAAAAAAGTTTAGGTACCAAATTA-AGAAAAAATGTCAAG
* *
64087334 TTCAGGTACCAATTTGAGCCCAAAAAAAGTTTAGGTACCAAATTAAGAAAAAATGTCAAG
1 TTTAAGTACCAATTTGAGCCCAAAAAAAGTTTAGGTACCAAATTAAGAAAAAATGTCAAG
64087394 TTTAAGTACCA
1 TTTAAGTACCA
64087405 GATATTATAT
Statistics
Matches: 108, Mismatches: 21, Indels: 7
0.79 0.15 0.05
Matches are distributed among these distances:
60 48 0.44
61 58 0.54
62 2 0.02
ACGTcount: A:0.46, C:0.15, G:0.16, T:0.23
Consensus pattern (60 bp):
TTTAAGTACCAATTTGAGCCCAAAAAAAGTTTAGGTACCAAATTAAGAAAAAATGTCAAG
Found at i:64098921 original size:39 final size:38
Alignment explanation
Indices: 64098877--64098954 Score: 95
Period size: 39 Copynumber: 2.0 Consensus size: 38
64098867 TTAAATTTTG
**
64098877 ATTTGGTATTTAAACTTGACATA-TTTTTTTAATTTGATA
1 ATTTGGTATCCAAA-TTGA-ATACTTTTTTTAATTTGATA
*
64098916 ATTTGGTATCCAAATTTAATACTTTTTTTTAATTTGATA
1 ATTTGGTATCCAAATTGAATAC-TTTTTTTAATTTGATA
64098955 CCTAAATTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
37 3 0.09
38 3 0.09
39 28 0.82
ACGTcount: A:0.31, C:0.06, G:0.09, T:0.54
Consensus pattern (38 bp):
ATTTGGTATCCAAATTGAATACTTTTTTTAATTTGATA
Found at i:64098962 original size:31 final size:31
Alignment explanation
Indices: 64098914--64098981 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
64098904 TTTAATTTGA
* *
64098914 TAATTTGGTATCCAAATTT-AATACTTTTTTT
1 TAATTTGATATCCAAATTTGAAT-CTTTTTCT
*
64098945 TAATTTGATA-CCTAAATTTGACTCTTTTTCT
1 TAATTTGATATCC-AAATTTGAATCTTTTTCT
64098976 TAATTT
1 TAATTT
64098982 AGTATCTAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 2 0.06
31 28 0.88
32 2 0.06
ACGTcount: A:0.28, C:0.12, G:0.06, T:0.54
Consensus pattern (31 bp):
TAATTTGATATCCAAATTTGAATCTTTTTCT
Found at i:64104292 original size:90 final size:91
Alignment explanation
Indices: 64104193--64104372 Score: 299
Period size: 90 Copynumber: 2.0 Consensus size: 91
64104183 TCTGAATTAA
* *
64104193 ATTTAATTTACTTAGCCCAACAAATTGAAGATTTAGACTCATTTTGAAGCTCGATTT-TAAAAAA
1 ATTTAATTTACTTAGCCCAACAAATTAAAGATTTAGACTCATTTTGAAGCTCGATTTAAAAAAAA
** *
64104257 ATCAATTGTATTAAATTAATAGGTCG
66 ATCAATCATATCAAATTAATAGGTCG
*
64104283 ATTTAATTTACTTAGCCCAACAAATTAAAGATTTAGGCTCATTTTGAAGCTCGATTTAAAAAAAA
1 ATTTAATTTACTTAGCCCAACAAATTAAAGATTTAGACTCATTTTGAAGCTCGATTTAAAAAAAA
64104348 ATCAATCATATCAAATTAATAGGTC
66 ATCAATCATATCAAATTAATAGGTC
64104373 AAAACTAGTT
Statistics
Matches: 83, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
90 55 0.66
91 28 0.34
ACGTcount: A:0.41, C:0.13, G:0.11, T:0.35
Consensus pattern (91 bp):
ATTTAATTTACTTAGCCCAACAAATTAAAGATTTAGACTCATTTTGAAGCTCGATTTAAAAAAAA
ATCAATCATATCAAATTAATAGGTCG
Found at i:64104946 original size:18 final size:18
Alignment explanation
Indices: 64104925--64104960 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
64104915 AGTATCACTA
64104925 CAGTATCTAATCTCACCG
1 CAGTATCTAATCTCACCG
64104943 CAGTATCTAATCTCACCG
1 CAGTATCTAATCTCACCG
64104961 TCACTACTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.33, G:0.11, T:0.28
Consensus pattern (18 bp):
CAGTATCTAATCTCACCG
Found at i:64107758 original size:205 final size:203
Alignment explanation
Indices: 64107404--64108221 Score: 1039
Period size: 205 Copynumber: 4.0 Consensus size: 203
64107394 TGTTTCATAG
* * *
64107404 GTTTCTATAACTCTCTAAAGCAAAATACTAGTCGCCAGACAACGAAACATACTCTCGAGTCAAAT
1 GTTTCTATAACTCTCTAAAGCAAAATACTAGTCGCCAGACAACAAAACATTCTCTAGAGTCAAAT
* ** * * *
64107469 CCAATCTTATGGACCAACTTTTACTAAGACATTCATTCACCGGACTGTCGCAATACATCTCGTTT
66 CCAATTTTATGGACCAACTTTTACCGAGACATTCATTC-CCCGACTTTCGCAATGCATCTCGTTT
* * * *
64107534 CCACAATAGAACGAAGATGAAAGCTCGTACATGTGTTTATGCAAACTGAGTTTTAGCTTCTCAAG
130 CCACGATAGAACAAAGATGAAAGCTCGT-CATGTGTTTATGCAAACCGAGTTTTAGCTTCTCAAT
64107599 ATGCAGCAAT
194 ATGCAGCAAT
* * * *
64107609 GTTTCTATAACTCTCTAAAGCAAAATACTAGTTGCCGGACTACAAAACATTCTCAAGAGTCAAAT
1 GTTTCTATAACTCTCTAAAGCAAAATACTAGTCGCCAGACAACAAAACATTCTCTAGAGTCAAAT
* ** * *
64107674 CCAATTTTATGGACCAGCTTCAACTGAGACATTCATACCCCGCACTTTCGCAATGCATCTCGTTT
66 CCAATTTTATGGACCAACTTTTACCGAGACATTCATTCCCCG-ACTTTCGCAATGCATCTCGTTT
** * * *
64107739 CCGTGATAGAACAAAGATGAAAGCTCGTACATGTGTTAATGAAAACCAAGTTTTAGCTTCTCAAT
130 CCACGATAGAACAAAGATGAAAGCTCGT-CATGTGTTTATGCAAACCGAGTTTTAGCTTCTCAAT
64107804 ATGCAGCAAT
194 ATGCAGCAAT
64107814 GTTTCTATAACTCTCTAAAGCAAAATACTAGTCGCCAGACAACAAAACATTCTCTCA-AGTC-AA
1 GTTTCTATAACTCTCTAAAGCAAAATACTAGTCGCCAGACAACAAAACATTCTCT-AGAGTCAAA
* * * ** *
64107877 TTCGATTTTATGGACCAACTTTGACCGAGACATTCATTCGCCATACTTTCGCAATGCATCTTGTT
65 TCCAATTTTATGGACCAACTTTTACCGAGACATTCATTC-CCCGACTTTCGCAATGCATCTCGTT
* * * *
64107942 TCCACGATAGAACAGAGATGAAAGCTAGGTCTTGTGTTTATGCAGACCCGAGTTTTAGCTTCTCA
129 TCCACGATAGAACAAAGATGAAAGCT-CGTCATGTGTTTATGCA-AACCGAGTTTTAGCTTCTCA
64108007 ATATGCAGCAAT
192 ATATGCAGCAAT
* * * *
64108019 GTTTCTACAACTCTCTAAAGCAAAATACTAGTTGCCGGACAACAAAACTTTCTCTAGAGTCAAAT
1 GTTTCTATAACTCTCTAAAGCAAAATACTAGTCGCCAGACAACAAAACATTCTCTAGAGTCAAAT
** * * *
64108084 CTGATTTTATGGACCAACTTGTACCGAGACATTCATTCACCAGACTTTCGCAATGCATCTCGTAT
66 CCAATTTTATGGACCAACTTTTACCGAGACATTCATTC-CCCGACTTTCGCAATGCATCTCGTTT
* ** * * *
64108149 -CAGAGATAGAACGGAGATGAAAGCTCGGTCGTGTGTCTACGCAAACCCGAGTTTTAGCTTCTCA
130 CCA-CGATAGAACAAAGATGAAAGCTC-GTCATGTGTTTATGCAAA-CCGAGTTTTAGCTTCTCA
64108213 ATATGCAGC
192 ATATGCAGC
64108222 CAGGATTAAA
Statistics
Matches: 536, Mismatches: 67, Indels: 19
0.86 0.11 0.03
Matches are distributed among these distances:
204 92 0.17
205 323 0.60
206 121 0.23
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.28
Consensus pattern (203 bp):
GTTTCTATAACTCTCTAAAGCAAAATACTAGTCGCCAGACAACAAAACATTCTCTAGAGTCAAAT
CCAATTTTATGGACCAACTTTTACCGAGACATTCATTCCCCGACTTTCGCAATGCATCTCGTTTC
CACGATAGAACAAAGATGAAAGCTCGTCATGTGTTTATGCAAACCGAGTTTTAGCTTCTCAATAT
GCAGCAAT
Found at i:64108169 original size:410 final size:411
Alignment explanation
Indices: 64107404--64108221 Score: 1155
Period size: 410 Copynumber: 2.0 Consensus size: 411
64107394 TGTTTCATAG
* *
64107404 GTTTCTATAACTCTCTAAAGCAAAATACTAGTCGCCAGACAACGAAACATACTCTCGAGTCAAAT
1 GTTTCTATAACTCTCTAAAGCAAAATACTAGTCGCCAGACAACAAAACATACTCTCAAGTCAAAT
* * *
64107469 CCAATCTTATGGACCAACTTTTACTAAGACATTCATTCACCGGACTGTCGCAATACATCTCGTTT
66 CCAATCTTATGGACCAACTTTGACCAAGACATTCATTCACCAGACTGTCGCAATACATCTCGTTT
*
64107534 CCACAATAGAACGAAGATGAAAGCTCGTACATGTGTTTATGCAAACTGAGTTTTAGCTTCTCAAG
131 CCACAATAGAACGAAGATGAAAGCTCGTACATGTGTTTATGCAAACCGAGTTTTAGCTTCTCAAG
* *
64107599 ATGCAGCAATGTTTCTATAACTCTCTAAAGCAAAATACTAGTTGCCGGACTACAAAACATTCTCA
196 ATGCAGCAATGTTTCTACAACTCTCTAAAGCAAAATACTAGTTGCCGGACAACAAAACATTCTCA
* * *
64107664 AGAGTCAAATCCAATTTTATGGACCAGCTTCAACTGAGACATTCATACCCCGCACTTTCGCAATG
261 AGAGTCAAATCCAATTTTATGGACCAACTTCAACCGAGACATTCATACCCAGCACTTTCGCAATG
* * * *
64107729 CATCTCGTTTCCGTGATAGAACAAAGATGAAAGCTC-GTACATGTGT-TAATG-AAAACCAAGTT
326 CATCTCGTATCAGAGATAGAACAAAGATGAAAGCTCGGT-CATGTGTCT-ACGCAAAACCAAGTT
64107791 TTAGCTTCTCAATATGCAGCAAT
389 TTAGCTTCTCAATATGCAGCAAT
*
64107814 GTTTCTATAACTCTCTAAAGCAAAATACTAGTCGCCAGACAACAAAACATTCTCTCAAGTC-AAT
1 GTTTCTATAACTCTCTAAAGCAAAATACTAGTCGCCAGACAACAAAACATACTCTCAAGTCAAAT
* * * * * * * * *
64107878 TCGATTTTATGGACCAACTTTGACCGAGACATTCATTCGCCATACTTTCGCAATGCATCTTGTTT
66 CCAATCTTATGGACCAACTTTGACCAAGACATTCATTCACCAGACTGTCGCAATACATCTCGTTT
* * * *
64107943 CCACGATAGAAC-AGAGATGAAAGCTAGGT-CTTGTGTTTATGCAGACCCGAGTTTTAGCTTCTC
131 CCACAATAGAACGA-AGATGAAAGCT-CGTACATGTGTTTATGCA-AACCGAGTTTTAGCTTCTC
* *
64108006 AATATGCAGCAATGTTTCTACAACTCTCTAAAGCAAAATACTAGTTGCCGGACAACAAAACTTTC
193 AAGATGCAGCAATGTTTCTACAACTCTCTAAAGCAAAATACTAGTTGCCGGACAACAAAACATTC
* ** ** *
64108071 TCTAGAGTCAAATCTGATTTTATGGACCAACTTGTACCGAGACATTCATTCACCAG-ACTTTCGC
258 TCAAGAGTCAAATCCAATTTTATGGACCAACTTCAACCGAGACATTCATAC-CCAGCACTTTCGC
** * * *
64108135 AATGCATCTCGTATCAGAGATAGAACGGAGATGAAAGCTCGGTCGTGTGTCTACGCAAACCCGAG
322 AATGCATCTCGTATCAGAGATAGAACAAAGATGAAAGCTCGGTCATGTGTCTACGCAAAACCAAG
64108200 TTTTAGCTTCTCAATATGCAGC
387 TTTTAGCTTCTCAATATGCAGC
64108222 CAGGATTAAA
Statistics
Matches: 359, Mismatches: 42, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
408 1 0.00
409 91 0.25
410 232 0.65
411 35 0.10
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.28
Consensus pattern (411 bp):
GTTTCTATAACTCTCTAAAGCAAAATACTAGTCGCCAGACAACAAAACATACTCTCAAGTCAAAT
CCAATCTTATGGACCAACTTTGACCAAGACATTCATTCACCAGACTGTCGCAATACATCTCGTTT
CCACAATAGAACGAAGATGAAAGCTCGTACATGTGTTTATGCAAACCGAGTTTTAGCTTCTCAAG
ATGCAGCAATGTTTCTACAACTCTCTAAAGCAAAATACTAGTTGCCGGACAACAAAACATTCTCA
AGAGTCAAATCCAATTTTATGGACCAACTTCAACCGAGACATTCATACCCAGCACTTTCGCAATG
CATCTCGTATCAGAGATAGAACAAAGATGAAAGCTCGGTCATGTGTCTACGCAAAACCAAGTTTT
AGCTTCTCAATATGCAGCAAT
Found at i:64116551 original size:18 final size:18
Alignment explanation
Indices: 64116504--64116554 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
64116494 GGTCCGACAT
* *
64116504 CAGCTCCAACGACGGCCA
1 CAGCTCCATCGGCGGCCA
64116522 CAGCTCCATCGGCGGCCA
1 CAGCTCCATCGGCGGCCA
* *
64116540 CGGCTCCGTCGGCGG
1 CAGCTCCATCGGCGG
64116555 GAAAGGCGCC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.16, C:0.43, G:0.31, T:0.10
Consensus pattern (18 bp):
CAGCTCCATCGGCGGCCA
Found at i:64130502 original size:176 final size:174
Alignment explanation
Indices: 64130144--64130826 Score: 781
Period size: 176 Copynumber: 3.9 Consensus size: 174
64130134 CCAAACAGTG
** * *
64130144 ATTAAACTGAGAGTGAATACATACAATTCCTACAAGATTATCACAATGCTAGGCAAAATCAGATC
1 ATTAAACTGAGAGACAATACATACAATTCCTACAAAATTATCACAATGCTAAGCAAAATCAGATC
* ** * * *
64130209 GAAAATCATCAATTCAT-A--CTATATAATAAAACGTCG-ATCTGAAATTTTAATCTATTGCCTT
66 GAAAATCATCAATT-ATGATGTTATATAATAAAAC-AAGAATCTGAAATTTTCATCTATAGTCTT
* *
64130270 CTTGTTTCATATATATTCTCAGAAACCAAACAGTAGCTAAACGATCA
129 CTTTTTTC-TATATATTCTCAGGAACCAAACAGTAGCTAAACGATCA
*
64130317 ATTAAACTGAGAGACAATACATACAATT-CTGACAAAAGTATCACAATGCTAAGCAAAATCAGAT
1 ATTAAACTGAGAGACAATACATACAATTCCT-ACAAAATTATCACAATGCTAAGCAAAATCAGAT
* * *** * *
64130381 ACGAAGATCATCGAACTATGATGTTATATAATAAAATGTGAATCTGAAATTTCCATCTATTGTCC
65 -CGAAAATCATC-AATTATGATGTTATATAATAAAACAAGAATCTGAAATTTTCATCTATAGT-C
**
64130446 TT-TTTTTTCTATATATTCTCAGGAACCAAACAGTAGCTAAAATATCA
127 TTCTTTTTTCTATATATTCTCAGGAACCAAACAGTAGCTAAACGATCA
* ** * * * * *
64130493 GTTAAACTGACCG--GATACATACAATTCCAACAAAATTATCACAATGCCAAACAAAAGCAGATC
1 ATTAAACTGAGAGACAATACATACAATTCCTACAAAATTATCACAATGCTAAGCAAAATCAGATC
** * *
64130556 GAAAAGAATCAATGTATGTTGTTATATAATAAAACAAGAATCTGAAATTTTCATATATAGTCTTC
66 GAAAATCATCAAT-TATGATGTTATATAATAAAACAAGAATCTGAAATTTTCATCTATAGTCTTC
* *
64130621 TTTTTTCCAGTATACTCTCAGGAACCAAACAGTAGCTAAACGATCA
130 TTTTTTCTA-TATATTCTCAGGAACCAAACAGTAGCTAAACGATCA
* * * * * *
64130667 ATTAAACTGAGA-ACGGAGACGTACATTTCCTACAAACTTATCGCAATGCTAAGCAAAATCAGAT
1 ATTAAACTGAGAGAC-AATACATACAATTCCTACAAAATTATCACAATGCTAAGCAAAATCAGAT
* * *
64130731 CAAAAATCATCAATTTATGACGTTATAAAATAAAACAAGAATCTGAAATTTTCATCTATAGTCTT
65 CGAAAATCATCAA-TTATGATGTTATATAATAAAACAAGAATCTGAAATTTTCATCTATAGTCTT
*
64130796 CTTTTTTCCAATATATTCTCAGGAACCAAAC
129 CTTTTTT-CTATATATTCTCAGGAACCAAAC
64130827 GATCAATTAA
Statistics
Matches: 430, Mismatches: 63, Indels: 31
0.82 0.12 0.06
Matches are distributed among these distances:
172 7 0.02
173 112 0.26
174 95 0.22
175 5 0.01
176 168 0.39
177 40 0.09
178 3 0.01
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (174 bp):
ATTAAACTGAGAGACAATACATACAATTCCTACAAAATTATCACAATGCTAAGCAAAATCAGATC
GAAAATCATCAATTATGATGTTATATAATAAAACAAGAATCTGAAATTTTCATCTATAGTCTTCT
TTTTTCTATATATTCTCAGGAACCAAACAGTAGCTAAACGATCA
Found at i:64130662 original size:350 final size:335
Alignment explanation
Indices: 64129974--64130826 Score: 901
Period size: 350 Copynumber: 2.5 Consensus size: 335
64129964 CAACCATTAA
* * * * * * *
64129974 ATCAATTAAACAGATAACGGATACATACAATCCCCTACAAAATTATCACAATGCTTAGCAAAACC
1 ATCAATTAAACTGAGAACGAAGACATACAAT-TCCTACAAAATTATCACAATGCTAAGCAAAATC
* * * * *
64130039 ATATCGAAAACCAACAATTTATGACGTTATATAATAAAAATGGAATATGAAGTTTTCATCTATTG
65 AGATCGAAAATCATCAATTTATGACGTTATATAAT-AAAATGGAATCTGAAATTTTCATCTATTG
* * * * *
64130104 TCATATTTGTTTCTTATATATTCTCAGGAACCAAACAGTGATTAAACTGAGAGTGAATACATACA
129 TCCT-TTTTTTTC-TATATATTCTCAGGAACCAAACAGTGATAAAACTGAAACTGAATACATACA
* * * ** * **
64130169 ATTCCTACAAGATTATCACAATGCTAGGCAAAATCAGATCGAAAATCATCAATTCATACTATATA
192 ATTCCAACAAAATTATCACAATGCCAAACAAAAGCAGATCGAAAAGAATCAATTCATACTATATA
** * * *
64130234 ATAAAACGTCGATCTGAAATTTTAATCTATTGCCTTCTTGTTTCATATATATTCTCAGAAACCAA
257 ATAAAACGAAGATCTGAAATTTTAATATATAGCCTTCTTGTTTCATATATACTCTCAGAAACCAA
64130299 ACAGTAGCTAAACG
322 ACAGTAGCTAAACG
* *
64130313 ATCAATTAAACTGAGAGAC-AATACATACAATT-CTGACAAAAGTATCACAATGCTAAGCAAAAT
1 ATCAATTAAACTGAGA-ACGAAGACATACAATTCCT-ACAAAATTATCACAATGCTAAGCAAAAT
* * * *
64130376 CAGATACGAAGATCATCGAA-CTATGATGTTATATAATAAAATGTGAATCTGAAATTTCCATCTA
64 CAGAT-CGAAAATCATC-AATTTATGACGTTATATAATAAAATG-GAATCTGAAATTTTCATCTA
* *
64130440 TTGTCCTTTTTTTTCTATATATTCTCAGGAACCAAACAGTAGCTAAAATATCAGTTAAACTGACC
126 TTGTCCTTTTTTTTCTATATATTCTCAGGAACCAAACAGT-GAT-AAA-A-C--TGAAACTGA--
64130505 GGATACATACAATTCCAACAAAATTATCACAATGCCAAACAAAAGCAGATCGAAAAGAATCAATG
183 --ATACATACAATTCCAACAAAATTATCACAATGCCAAACAAAAGCAGATCGAAAAGAATCAAT-
** * * * *
64130570 T-ATGTTGTTATATAATAAAAC-AAGAATCTGAAATTTTCATATATAGTCTTCTTTTTTCCA-GT
245 TCA---TACTATATAATAAAACGAAG-ATCTGAAATTTTAATATATAGCCTTCTTGTTT-CATAT
*
64130632 ATACTCTCAGGAACCAAACAGTAGCTAAACG
305 ATACTCTCAGAAACCAAACAGTAGCTAAACG
* * * * *
64130663 ATCAATTAAACTGAGAACGGAGACGTACATTTCCTACAAACTTATCGCAATGCTAAGCAAAATCA
1 ATCAATTAAACTGAGAACGAAGACATACAATTCCTACAAAATTATCACAATGCTAAGCAAAATCA
* * ** *
64130728 GATCAAAAATCATCAATTTATGACGTTATAAAATAAAACAAGAATCTGAAATTTTCATCTATAGT
66 GATCGAAAATCATCAATTTATGACGTTATATAATAAAA-TGGAATCTGAAATTTTCATCTATTGT
*
64130793 -CTTCTTTTTTCCAATATATTCTCAGGAACCAAAC
130 CCTT-TTTTTT-CTATATATTCTCAGGAACCAAAC
64130827 GATCAATTAA
Statistics
Matches: 427, Mismatches: 60, Indels: 43
0.81 0.11 0.08
Matches are distributed among these distances:
337 27 0.06
338 44 0.10
339 73 0.17
340 5 0.01
341 1 0.00
343 6 0.01
347 55 0.13
348 6 0.01
349 58 0.14
350 148 0.35
351 4 0.01
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (335 bp):
ATCAATTAAACTGAGAACGAAGACATACAATTCCTACAAAATTATCACAATGCTAAGCAAAATCA
GATCGAAAATCATCAATTTATGACGTTATATAATAAAATGGAATCTGAAATTTTCATCTATTGTC
CTTTTTTTTCTATATATTCTCAGGAACCAAACAGTGATAAAACTGAAACTGAATACATACAATTC
CAACAAAATTATCACAATGCCAAACAAAAGCAGATCGAAAAGAATCAATTCATACTATATAATAA
AACGAAGATCTGAAATTTTAATATATAGCCTTCTTGTTTCATATATACTCTCAGAAACCAAACAG
TAGCTAAACG
Found at i:64131673 original size:22 final size:21
Alignment explanation
Indices: 64131623--64131675 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
64131613 CCCGTTTTTA
* *
64131623 ATTAAAATT-AAATATTTTTT
1 ATTAAAATTAAAATAATTGTT
*
64131643 AATAAAATTAAAACTAATTGTT
1 ATTAAAATTAAAA-TAATTGTT
64131665 ATTAAAATTAA
1 ATTAAAATTAA
64131676 TTGTTAGTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 8 0.30
21 3 0.11
22 16 0.59
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (21 bp):
ATTAAAATTAAAATAATTGTT
Found at i:64131688 original size:16 final size:16
Alignment explanation
Indices: 64131651--64131690 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
64131641 TTAATAAAAT
* *
64131651 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
64131667 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
64131683 TAAAATTA
1 TAAAATTA
64131691 CCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:64131769 original size:59 final size:59
Alignment explanation
Indices: 64131701--64131870 Score: 313
Period size: 59 Copynumber: 2.9 Consensus size: 59
64131691 CCAAATTATT
*
64131701 AATTGTTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
1 AATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
*
64131760 AATTATTAATTGTATTAATTGTTGTAATAAAACCTAACATTTGATTAGTAAATTTATCA
1 AATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
*
64131819 AATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGATTAGTAAA
1 AATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAA
64131871 ACAAACTTGA
Statistics
Matches: 107, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
59 107 1.00
ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44
Consensus pattern (59 bp):
AATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
Found at i:64141181 original size:21 final size:21
Alignment explanation
Indices: 64141157--64141197 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
64141147 TTATTGTTTT
64141157 TAGACATACTATTACTGCTTC
1 TAGACATACTATTACTGCTTC
* * *
64141178 TAGATATATTATTATTGCTT
1 TAGACATACTATTACTGCTT
64141198 AGAAAACCCG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.15, G:0.10, T:0.46
Consensus pattern (21 bp):
TAGACATACTATTACTGCTTC
Found at i:64149277 original size:18 final size:18
Alignment explanation
Indices: 64149239--64149274 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
64149229 TTATTATTTT
*
64149239 TAAAATTTACTATTAAAA
1 TAAAATTTAATATTAAAA
64149257 TAAAATTTAAATATTAAA
1 TAAAATTT-AATATTAAA
64149275 TAACTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:64151285 original size:6 final size:7
Alignment explanation
Indices: 64151266--64151292 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
64151256 CAATTCAATG
64151266 ATAAAAA
1 ATAAAAA
64151273 ATAAAAA
1 ATAAAAA
64151280 ATAAAAA
1 ATAAAAA
64151287 ATAAAA
1 ATAAAA
64151293 CTATCTTCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
ATAAAAA
Found at i:64163556 original size:19 final size:22
Alignment explanation
Indices: 64163518--64163557 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
64163508 TTTATTTTAT
64163518 ATATGATATTATAAAGTAATAA
1 ATATGATATTATAAAGTAATAA
64163540 ATAT-ATATT-TAAA-TAATA
1 ATATGATATTATAAAGTAATA
64163558 TTTAAATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.28
20 4 0.22
21 5 0.28
22 4 0.22
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (22 bp):
ATATGATATTATAAAGTAATAA
Found at i:64163728 original size:33 final size:32
Alignment explanation
Indices: 64163633--64163732 Score: 87
Period size: 31 Copynumber: 3.0 Consensus size: 32
64163623 TTAATATTTT
*
64163633 AATATATGAAATATAAATTTTAAATATGATTAAATA
1 AATATAT-AAAT-TATATTTTAAATAT--TTAAATA
* * * *
64163669 ATTAATATTAATTAT-TTCTAAA-ATTTAATTA
1 AAT-ATATAAATTATATTTTAAATATTTAAATA
64163700 GAATATATAAATTATATTTTAAATATTTAAATA
1 -AATATATAAATTATATTTTAAATATTTAAATA
64163733 TAACCATTAA
Statistics
Matches: 51, Mismatches: 9, Indels: 11
0.72 0.13 0.15
Matches are distributed among these distances:
31 16 0.31
32 8 0.16
33 10 0.20
34 6 0.12
35 2 0.04
36 5 0.10
37 4 0.08
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (32 bp):
AATATATAAATTATATTTTAAATATTTAAATA
Found at i:64181616 original size:15 final size:16
Alignment explanation
Indices: 64181596--64181637 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
64181586 ATTTACATTT
*
64181596 TTAAACTTAAAAAT-C
1 TTAAACTTAAAAATAA
64181611 TTAAAC-TAAAAATAA
1 TTAAACTTAAAAATAA
*
64181626 TTAAATTTAAAA
1 TTAAACTTAAAA
64181638 GGCATAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 7 0.30
15 11 0.48
16 5 0.22
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (16 bp):
TTAAACTTAAAAATAA
Found at i:64188542 original size:23 final size:23
Alignment explanation
Indices: 64188516--64188560 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
64188506 AAGTTTAATT
64188516 GTTAACATTCTTTTTGTTAAATA
1 GTTAACATTCTTTTTGTTAAATA
64188539 GTTAACATTCTTTTTGTTAAAT
1 GTTAACATTCTTTTTGTTAAAT
64188561 TTAGGTCCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (23 bp):
GTTAACATTCTTTTTGTTAAATA
Found at i:64190285 original size:91 final size:90
Alignment explanation
Indices: 64190175--64190346 Score: 274
Period size: 91 Copynumber: 1.9 Consensus size: 90
64190165 CTTAAATAGG
64190175 GTGGGTCAAAATCTAATAATAAAAATATATAATACAATAACCG-GTATATATAAAATAACTTATC
1 GTGGGTCAAAATCTAATAATAAAAATATATAATACAATAA-CGTGTATATATAAAATAACTTATC
64190239 AAATCAAACCCTTATATATACATATGT
65 AAATC-AACCCTTATATATACATATGT
* * * *
64190266 GTGGGTCAAGATGTAATAATAAAAATATATAATACAATAATGTGTATATATAAAATAGCTTATCA
1 GTGGGTCAAAATCTAATAATAAAAATATATAATACAATAACGTGTATATATAAAATAACTTATCA
*
64190331 AATCTACCCTTATATA
66 AATCAACCCTTATATA
64190347 CAGAGAAATT
Statistics
Matches: 75, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
90 12 0.16
91 63 0.84
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.32
Consensus pattern (90 bp):
GTGGGTCAAAATCTAATAATAAAAATATATAATACAATAACGTGTATATATAAAATAACTTATCA
AATCAACCCTTATATATACATATGT
Found at i:64197924 original size:6 final size:6
Alignment explanation
Indices: 64197913--64197945 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
64197903 ACAAATTTAT
64197913 AAAATA AAAATA AAAATA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAA
64197946 GTACTCTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:64199626 original size:39 final size:39
Alignment explanation
Indices: 64199573--64199652 Score: 128
Period size: 40 Copynumber: 2.1 Consensus size: 39
64199563 GCCGTTTGGA
64199573 TTTGTAAAACGCCGCTAATG--CATATTTTTAGCGGCGCT
1 TTTGTAAAACGCCGCTAATGATCAT-TTTTTAGCGGCGCT
64199611 TTTGTAGAAACGCCGCTAATGATCATTTTTTAGCGGCGCT
1 TTTGTA-AAACGCCGCTAATGATCATTTTTTAGCGGCGCT
64199651 TT
1 TT
64199653 ATCACAATCG
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
38 6 0.15
39 14 0.36
40 16 0.41
41 3 0.08
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36
Consensus pattern (39 bp):
TTTGTAAAACGCCGCTAATGATCATTTTTTAGCGGCGCT
Found at i:64199665 original size:40 final size:39
Alignment explanation
Indices: 64199579--64199710 Score: 117
Period size: 40 Copynumber: 3.3 Consensus size: 39
64199569 TGGATTTGTA
* *
64199579 AAACGCCGCTAATGCATATTTTTAGCGGCGCTTTTGTAG
1 AAACGCCGCTAATGCATATTTTTAGCGGCGCTTTTGCAC
64199618 AAACGCCGCTAATG-ATCATTTTTTAGCGGCGCTTTAT-CAC
1 AAACGCCGCTAATGCAT-A-TTTTTAGCGGCGCTTT-TGCAC
* * * * *
64199658 AATCGCCGCTAATTCCTTATTTTTACCGGCGTTTTTTGTC-C
1 AAACGCCGCTAA-TGCATATTTTTAGCGGCG-CTTTTG-CAC
*
64199699 AAACGCCACTAA
1 AAACGCCGCTAA
64199711 ATGTGCCGTT
Statistics
Matches: 76, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
38 2 0.03
39 15 0.20
40 40 0.53
41 17 0.22
42 2 0.03
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.34
Consensus pattern (39 bp):
AAACGCCGCTAATGCATATTTTTAGCGGCGCTTTTGCAC
Found at i:64217936 original size:8 final size:8
Alignment explanation
Indices: 64217923--64217951 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
64217913 ACAGTCCATC
64217923 AAAAAATA
1 AAAAAATA
64217931 AAAAAAT-
1 AAAAAATA
64217938 AAAAAATA
1 AAAAAATA
64217946 AAAAAA
1 AAAAAA
64217952 AAGATTTCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (8 bp):
AAAAAATA
Found at i:64217943 original size:15 final size:15
Alignment explanation
Indices: 64217923--64217951 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
64217913 ACAGTCCATC
64217923 AAAAAATAAAAAAAT
1 AAAAAATAAAAAAAT
64217938 AAAAAATAAAAAAA
1 AAAAAATAAAAAAA
64217952 AAGATTTCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (15 bp):
AAAAAATAAAAAAAT
Found at i:64218389 original size:20 final size:21
Alignment explanation
Indices: 64218342--64218389 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 21
64218332 TATGAATTTT
* *
64218342 AAATATTATTTAAATAATTCA
1 AAATAATATTTAAATAATTAA
*
64218363 AAA-AATATTT-AATATTTAA
1 AAATAATATTTAAATAATTAA
64218382 AAATAATA
1 AAATAATA
64218390 ATCTTGTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 10 0.43
20 10 0.43
21 3 0.13
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
AAATAATATTTAAATAATTAA
Found at i:64222117 original size:21 final size:21
Alignment explanation
Indices: 64222062--64222122 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
64222052 TCTCGAACAA
64222062 TAAGAAATCTGATAACAAGCC
1 TAAGAAATCTGATAACAAGCC
*
64222083 T----AAT-TAGTTAACAAGCC
1 TAAGAAATCT-GATAACAAGCC
64222100 TAAGAAATCTGATAACAAGCC
1 TAAGAAATCTGATAACAAGCC
64222121 TA
1 TA
64222123 CAAGGACCGT
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
16 1 0.03
17 14 0.44
21 16 0.50
22 1 0.03
ACGTcount: A:0.46, C:0.18, G:0.13, T:0.23
Consensus pattern (21 bp):
TAAGAAATCTGATAACAAGCC
Found at i:64223959 original size:237 final size:235
Alignment explanation
Indices: 64223491--64223970 Score: 687
Period size: 236 Copynumber: 2.0 Consensus size: 235
64223481 ATCAGGGTAG
* *
64223491 AAACTTAAGCCATGTGACCCCAATACAATGCAAACACCATTCCCTACAGAAATCACTTCAAATAA
1 AAACTTAAGCCATGCGACCCCAATACAATGCAAACACCATTCCCTACAGAAATCACTTAAAATAA
* * *
64223556 GTTCCAATTAACCACCTCCAATGACATATTCCCAGAGGGTGGTAATAGTTACACGTATATACCCA
66 GTTCCAATTAACCACCTCCAATGACATATTCCAAGAGGGTGCTAATAGTTACACGTATAAACCCA
* * *
64223621 AACCACATTCATAAAGGAATTGAACAAACCATGAATGCAAACAATAACCATAGCAACCTCAAGAT
131 AACCACATTCATAAAAGAATTAAACAAACCATGAATGCAAACAATAACCAGAGCAACCTCAAGAT
*
64223686 ACAATACTACAAACTATATAACAACTAAGCTAAGAATATA
196 AAAATACTACAAACTATATAACAACTAAGCTAAGAATATA
* * * * * *
64223726 AAACTTAAGCCATGCGACTCCAATACCATTGGAAACACCATTGCCTACGGAAATTACTTAAAATA
1 AAACTTAAGCCATGCGACCCCAATA-CAATGCAAACACCATTCCCTACAGAAATCACTTAAAATA
* * * *
64223791 AGTTCCGATTAACCGCCTCTAATGACATATTCGAAGAGGGTGCTAATAGTTAGC-CGTATAAACC
65 AGTTCCAATTAACCACCTCCAATGACATATTCCAAGAGGGTGCTAATAGTTA-CACGTATAAACC
* *
64223855 TAAACCA-AGTTCATAAAAGAATTAAAACAAACCATTAATGCAAACAATAACCAGAGCAACC-CA
129 CAAACCACA-TTCATAAAAGAATT-AAACAAACCATGAATGCAAACAATAACCAGAGCAACCTC-
*
64223918 AAGATAAAATGCTACAAACTATATAACAACTAAGCTAAGAATATA
191 AAGATAAAATACTACAAACTATATAACAACTAAGCTAAGAATATA
*
64223963 AAAGTTAA
1 AAACTTAA
64223971 AACTTCAGTA
Statistics
Matches: 217, Mismatches: 23, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
235 24 0.11
236 108 0.50
237 85 0.39
ACGTcount: A:0.44, C:0.23, G:0.11, T:0.22
Consensus pattern (235 bp):
AAACTTAAGCCATGCGACCCCAATACAATGCAAACACCATTCCCTACAGAAATCACTTAAAATAA
GTTCCAATTAACCACCTCCAATGACATATTCCAAGAGGGTGCTAATAGTTACACGTATAAACCCA
AACCACATTCATAAAAGAATTAAACAAACCATGAATGCAAACAATAACCAGAGCAACCTCAAGAT
AAAATACTACAAACTATATAACAACTAAGCTAAGAATATA
Found at i:64226419 original size:21 final size:20
Alignment explanation
Indices: 64226380--64226419 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
64226370 ATGTTGGGGA
*
64226380 TTTTGAAGGTGCTTTGAAGG
1 TTTTGAAGGTGATTTGAAGG
*
64226400 TTTTGAATGTGATGTTGAAG
1 TTTTGAAGGTGAT-TTGAAG
64226420 AGTCGGCATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.23, C:0.03, G:0.33, T:0.42
Consensus pattern (20 bp):
TTTTGAAGGTGATTTGAAGG
Found at i:64227309 original size:17 final size:17
Alignment explanation
Indices: 64227289--64227321 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
64227279 ATATCTTTCG
*
64227289 AATATGAATATGTATCC
1 AATATGAATATATATCC
64227306 AATATGAATATATATC
1 AATATGAATATATATC
64227322 AGACATAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.36
Consensus pattern (17 bp):
AATATGAATATATATCC
Found at i:64234811 original size:135 final size:135
Alignment explanation
Indices: 64234637--64234907 Score: 497
Period size: 135 Copynumber: 2.0 Consensus size: 135
64234627 CCTTCTTTTC
64234637 TCACAAACTTTCAATTGTATCAAATTACTCAGAAAATAGTTAATAATTAAGGATTGCTAATGTAG
1 TCACAAACTTTCAATTGTATCAAATTACTCAGAAAATAGTTAATAATTAAGGATTGCTAATGTAG
*
64234702 ATAGACAGAAGATACCAATGACATAATGATCCGTAGGTAGGTTTGAATAAGCAGTACATTTACTT
66 ATAGACAGAAGATACCAATGACATAATGATCCATAGGTAGGTTTGAATAAGCAGTACATTTACTT
*
64234767 GCGAT
131 ACGAT
* *
64234772 TCACAAACTTTCAATTGTATCAAATTGCTCAGAAAATAGTTAATGATTAAGGATTGCTAATGTAG
1 TCACAAACTTTCAATTGTATCAAATTACTCAGAAAATAGTTAATAATTAAGGATTGCTAATGTAG
*
64234837 ATAGACAGAAGATACCAATGATATAATGATCCATAGGTAGGTTTGAATAAGCAGTACATTTACTT
66 ATAGACAGAAGATACCAATGACATAATGATCCATAGGTAGGTTTGAATAAGCAGTACATTTACTT
64234902 ACGAT
131 ACGAT
64234907 T
1 T
64234908 AGTATAAAAA
Statistics
Matches: 131, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
135 131 1.00
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (135 bp):
TCACAAACTTTCAATTGTATCAAATTACTCAGAAAATAGTTAATAATTAAGGATTGCTAATGTAG
ATAGACAGAAGATACCAATGACATAATGATCCATAGGTAGGTTTGAATAAGCAGTACATTTACTT
ACGAT
Found at i:64243394 original size:23 final size:22
Alignment explanation
Indices: 64243347--64243394 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
64243337 ATTCATCCAC
* * *
64243347 ATATTTTTATTTTTTATTTTTA
1 ATATTTTCATTTTTTATCTTGA
64243369 ATATTTTCATTATTTTATCTTGA
1 ATATTTTCATT-TTTTATCTTGA
64243392 ATA
1 ATA
64243395 AATTATTAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (22 bp):
ATATTTTCATTTTTTATCTTGA
Found at i:64249651 original size:15 final size:15
Alignment explanation
Indices: 64249633--64249669 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
64249623 ATTGGTTGAA
64249633 GCCAAAGCAATTACT
1 GCCAAAGCAATTACT
64249648 GCCAAAGCAATTACT
1 GCCAAAGCAATTACT
*
64249663 GTCAAAG
1 GCCAAAG
64249670 TAATGGAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.41, C:0.24, G:0.16, T:0.19
Consensus pattern (15 bp):
GCCAAAGCAATTACT
Found at i:64261793 original size:22 final size:21
Alignment explanation
Indices: 64261753--64261793 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
64261743 ACTTAAATCC
*
64261753 AATGTTTAATTTCTCAAATTT
1 AATGTTTAATTTATCAAATTT
*
64261774 AATGTTTTAATTTATTAAAT
1 AATG-TTTAATTTATCAAAT
64261794 AACACCTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.54
Consensus pattern (21 bp):
AATGTTTAATTTATCAAATTT
Found at i:64264328 original size:22 final size:22
Alignment explanation
Indices: 64264295--64264361 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 22
64264285 TGCACTAATG
*
64264295 AACAGAGAGCACTAAAGTGCTA
1 AACAAAGAGCACTAAAGTGCTA
* *
64264317 TACAAAGAGCAC-ATATGTGCTA
1 AACAAAGAGCACTA-AAGTGCTA
* * *
64264339 AACAGAGAGCACTGACGTGCTA
1 AACAAAGAGCACTAAAGTGCTA
64264361 A
1 A
64264362 TAATCAGATA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
21 1 0.03
22 35 0.97
ACGTcount: A:0.42, C:0.19, G:0.22, T:0.16
Consensus pattern (22 bp):
AACAAAGAGCACTAAAGTGCTA
Found at i:64264374 original size:25 final size:25
Alignment explanation
Indices: 64264341--64264423 Score: 112
Period size: 25 Copynumber: 3.3 Consensus size: 25
64264331 ATGTGCTAAA
**
64264341 CAGAGAGCACTGACGTGCTAATAAT
1 CAGAGAGCACCAACGTGCTAATAAT
* *
64264366 CAGATAGCACCAACGTGTTAATAAT
1 CAGAGAGCACCAACGTGCTAATAAT
*
64264391 CAGAGAGCACCAACATGCTAATAAT
1 CAGAGAGCACCAACGTGCTAATAAT
*
64264416 TAGAGAGC
1 CAGAGAGC
64264424 GTGCTAAAGT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 50 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.19
Consensus pattern (25 bp):
CAGAGAGCACCAACGTGCTAATAAT
Found at i:64265466 original size:23 final size:23
Alignment explanation
Indices: 64265437--64265485 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
64265427 TTAATAATTA
64265437 TATACATATATTAATTACAAATG
1 TATACATATATTAATTACAAATG
*
64265460 TATACATATATTTATTACAAATG
1 TATACATATATTAATTACAAATG
64265483 TAT
1 TAT
64265486 TTATAATTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.45, C:0.08, G:0.04, T:0.43
Consensus pattern (23 bp):
TATACATATATTAATTACAAATG
Found at i:64265911 original size:15 final size:15
Alignment explanation
Indices: 64265858--64265914 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
64265848 TTACAACTAC
64265858 AAAATATTTATTATT
1 AAAATATTTATTATT
* * *
64265873 AATATAATTATAATTGTA
1 AAAAT-ATT-T-ATTATT
64265891 ATAAATATTTATTATT
1 A-AAATATTTATTATT
64265907 AAAATATT
1 AAAATATT
64265915 AATACTGAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
15 11 0.34
16 8 0.25
17 2 0.06
18 8 0.25
19 3 0.09
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (15 bp):
AAAATATTTATTATT
Found at i:64265973 original size:15 final size:16
Alignment explanation
Indices: 64265953--64265983 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
64265943 AAGAACATTA
64265953 TTTAAAA-TTATTATT
1 TTTAAAATTTATTATT
64265968 TTTAAAATTTATTATT
1 TTTAAAATTTATTATT
64265984 AAAATAAGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTAAAATTTATTATT
Found at i:64266670 original size:26 final size:26
Alignment explanation
Indices: 64266640--64266689 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
64266630 AATTATGTTG
64266640 ATGAGGTCATAATTTCTTTTAACAAA
1 ATGAGGTCATAATTTCTTTTAACAAA
64266666 ATGAGGTCATAATTTCTTTTAACA
1 ATGAGGTCATAATTTCTTTTAACA
64266690 GATGAGGCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (26 bp):
ATGAGGTCATAATTTCTTTTAACAAA
Found at i:64272982 original size:23 final size:22
Alignment explanation
Indices: 64272940--64272982 Score: 52
Period size: 23 Copynumber: 1.9 Consensus size: 22
64272930 CAATTGAACC
*
64272940 AAAATTTTAATATTTTATTTTT
1 AAAATTTTAATATTTAATTTTT
64272962 AAAATTTTTAAT-TATTAATTT
1 AAAA-TTTTAATAT-TTAATTT
64272983 AATCAAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
AAAATTTTAATATTTAATTTTT
Found at i:64274325 original size:10 final size:10
Alignment explanation
Indices: 64274303--64274337 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
64274293 TTGAACCGGG
64274303 TTTTATAATT
1 TTTTATAATT
*
64274313 TTTTA-AATA
1 TTTTATAATT
64274322 TTTTATAATT
1 TTTTATAATT
64274332 TTTTAT
1 TTTTAT
64274338 GAACAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 8 0.36
10 14 0.64
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTTATAATT
Found at i:64281039 original size:35 final size:34
Alignment explanation
Indices: 64280948--64281039 Score: 89
Period size: 35 Copynumber: 2.7 Consensus size: 34
64280938 CCCATTTTTT
* *
64280948 AATAAACATTAAAAAT-TTATTTTAAAAATAAAA
1 AATAAAAATAAAAAATATTATTTTAAAAATAAAA
** * *
64280981 AATAAAAATATTTTAAA-AGTATTTTAAAATTAAAA
1 AATAAAAATA--AAAAATATTATTTTAAAAATAAAA
64281016 AATAAAAATAAAAAATATATATTT
1 AATAAAAATAAAAAATAT-TATTT
64281040 ATTCCAAAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 8
0.73 0.15 0.13
Matches are distributed among these distances:
33 11 0.24
34 1 0.02
35 33 0.73
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.35
Consensus pattern (34 bp):
AATAAAAATAAAAAATATTATTTTAAAAATAAAA
Found at i:64282523 original size:20 final size:21
Alignment explanation
Indices: 64282490--64282528 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
64282480 TTATATGTCA
*
64282490 TATATATTTTTAAATTATTTT
1 TATATATTTATAAATTATTTT
64282511 TATA-ATTTATAAATTATT
1 TATATATTTATAAATTATT
64282529 AACTAACTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
TATATATTTATAAATTATTTT
Found at i:64290366 original size:105 final size:105
Alignment explanation
Indices: 64290178--64290367 Score: 265
Period size: 105 Copynumber: 1.8 Consensus size: 105
64290168 CCGTCAGCAA
* * *
64290178 AGTTTGCCACACCAGTTCGGATTGTCACCTACACCATCTATTGGTACATTATCTGATACACCTAT
1 AGTTTGCCACACCAATTCGGATTGTCACCTACACCATCTATTGGCACATTATCGGATACACCTAT
*
64290243 GACGAGGCAGAAACGAGATGTATTTGAGAAGAGTATTGAG
66 GACGAGGCAGAAAAGAGATGTATTTGAGAAGAGTATTGAG
* * * * * *
64290283 AGTTTGCCACAGCAATTTGGGTTGTCACCTACCCCGTCTATTGGCACGTTATCGGATACACCTAT
1 AGTTTGCCACACCAATTCGGATTGTCACCTACACCATCTATTGGCACATTATCGGATACACCTAT
*
64290348 GAC-AGGACGGAAAAGAGATG
66 GACGAGG-CAGAAAAGAGATG
64290368 CTCAAGATGC
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
104 3 0.04
105 70 0.96
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (105 bp):
AGTTTGCCACACCAATTCGGATTGTCACCTACACCATCTATTGGCACATTATCGGATACACCTAT
GACGAGGCAGAAAAGAGATGTATTTGAGAAGAGTATTGAG
Found at i:64304853 original size:21 final size:21
Alignment explanation
Indices: 64304828--64304867 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
64304818 TTGAATATTA
64304828 AAATTAATTTTTAAATTTTTT
1 AAATTAATTTTTAAATTTTTT
64304849 AAATTAATTTTTAAATTTT
1 AAATTAATTTTTAAATTTT
64304868 AATATGTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
AAATTAATTTTTAAATTTTTT
Found at i:64304859 original size:12 final size:12
Alignment explanation
Indices: 64304828--64304865 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
64304818 TTGAATATTA
64304828 AAATTAATTTTT
1 AAATTAATTTTT
64304840 AAA-T--TTTTT
1 AAATTAATTTTT
64304849 AAATTAATTTTT
1 AAATTAATTTTT
64304861 AAATT
1 AAATT
64304866 TTAATATGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
9 8 0.35
10 1 0.04
11 1 0.04
12 13 0.57
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
AAATTAATTTTT
Found at i:64307603 original size:135 final size:137
Alignment explanation
Indices: 64307421--64307674 Score: 302
Period size: 141 Copynumber: 1.9 Consensus size: 137
64307411 TTTTGATATA
* * *
64307421 AAAAAAACTCACATAGTACCCATGTAACTAAAAGATGATGTTATAATGAA-TT-TA-A-CAAAAT
1 AAAAAAACTCACATACTACCCATGTAACTAAAAAAAGATGTTATAATGAACTTGTATATCAAAAT
* * * *
64307482 AATTTTAATAATATTAACAGTTGGACCTGAGTTTTAAAAT-TTAAAAAGTAGAAGGACTAAATTT
66 AATTTTAATAATATTAACAGTTAGACCGGA-ATTTAAAATCTGAAAAA-TAGAAGGACTAAATTT
64307546 TAAAATTAT
129 TAAAATTAT
* * * * *
64307555 AAAAATACTCACTTACTAGCCATGTGACTTAAAAAAAGATGTTGTAATGAACTTGTATTTATCAA
1 AAAAAAACTCACATACTACCCATGTAAC-TAAAAAAAGATGTTATAATGAACTTGTA--TATCAA
* *
64307620 AATAATTTTAGTAATATTAATAGTTAGACCGGAATTTAAAATCTGAAAAATAGAA
63 AATAATTTTAATAATATTAACAGTTAGACCGGAATTTAAAATCTGAAAAATAGAA
64307675 AAATTAAATT
Statistics
Matches: 98, Mismatches: 14, Indels: 10
0.80 0.11 0.08
Matches are distributed among these distances:
134 23 0.23
135 19 0.19
136 2 0.02
137 2 0.02
140 14 0.14
141 38 0.39
ACGTcount: A:0.46, C:0.09, G:0.12, T:0.32
Consensus pattern (137 bp):
AAAAAAACTCACATACTACCCATGTAACTAAAAAAAGATGTTATAATGAACTTGTATATCAAAAT
AATTTTAATAATATTAACAGTTAGACCGGAATTTAAAATCTGAAAAATAGAAGGACTAAATTTTA
AAATTAT
Found at i:64313500 original size:19 final size:18
Alignment explanation
Indices: 64313473--64313516 Score: 65
Period size: 19 Copynumber: 2.5 Consensus size: 18
64313463 CAAACTATAA
64313473 CTTTT-ATTTTAAACTGGT
1 CTTTTAATTTTAAACT-GT
64313491 CTTTTAATTTTAAACTGT
1 CTTTTAATTTTAAACTGT
64313509 -TTTTAATT
1 CTTTTAATT
64313517 ACATCTTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.32
18 7 0.28
19 10 0.40
ACGTcount: A:0.25, C:0.09, G:0.07, T:0.59
Consensus pattern (18 bp):
CTTTTAATTTTAAACTGT
Found at i:64314932 original size:43 final size:43
Alignment explanation
Indices: 64314871--64314958 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
64314861 AGTATATAAA
64314871 TTTCAAAACATTTTAATTGAGTACCAATATTGTACCAATCAAG
1 TTTCAAAACATTTTAATTGAGTACCAATATTGTACCAATCAAG
64314914 TTTCAAAACATTTTAATTGAGTACCAATATTGTACCAATCAAG
1 TTTCAAAACATTTTAATTGAGTACCAATATTGTACCAATCAAG
64314957 TT
1 TT
64314959 ACTCTGTTAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (43 bp):
TTTCAAAACATTTTAATTGAGTACCAATATTGTACCAATCAAG
Found at i:64324596 original size:21 final size:20
Alignment explanation
Indices: 64324566--64324609 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
64324556 GTCCTTGTAA
*
64324566 TTTTATTTTCAGATTTTTTT
1 TTTTATTTTCAGATTTTCTT
*
64324586 TTTTACTTTTCGGATTTTCTT
1 TTTTA-TTTTCAGATTTTCTT
64324607 TTT
1 TTT
64324610 AAAAAAATAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.11, C:0.09, G:0.07, T:0.73
Consensus pattern (20 bp):
TTTTATTTTCAGATTTTCTT
Found at i:64324603 original size:20 final size:20
Alignment explanation
Indices: 64324566--64324610 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
64324556 GTCCTTGTAA
*
64324566 TTTTATTTTCAGATTTTTTT
1 TTTTATTTTCAGATTTTTCT
*
64324586 TTTTACTTTTCGGA-TTTTCT
1 TTTTA-TTTTCAGATTTTTCT
64324606 TTTTA
1 TTTTA
64324611 AAAAAATAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.13, C:0.09, G:0.07, T:0.71
Consensus pattern (20 bp):
TTTTATTTTCAGATTTTTCT
Found at i:64325030 original size:32 final size:32
Alignment explanation
Indices: 64324994--64325057 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
64324984 CCATAAGCTT
64324994 GGATGTTAAATGTTAACATACATATGATGCTA
1 GGATGTTAAATGTTAACATACATATGATGCTA
*
64325026 GGATGTTAAATGTTAACTTACATATGATGCTA
1 GGATGTTAAATGTTAACATACATATGATGCTA
64325058 AGCATATTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (32 bp):
GGATGTTAAATGTTAACATACATATGATGCTA
Found at i:64330356 original size:115 final size:111
Alignment explanation
Indices: 64330212--64330434 Score: 313
Period size: 115 Copynumber: 2.0 Consensus size: 111
64330202 GCGGTAAATT
* *
64330212 CATGGCTGGATCAAATTGCTGATTAGGATATTTTGCTGGGATTCTTTATATAAAATTTATTTATT
1 CATGGCTGGATCAAATTGCTGATTAGGATATTTTACTGGGATTCCTTATATAAAATTTATTT-TT
* * *
64330277 TATTTATGAATTTTCTGACTCAAGCTCATATATTTTATATAAGGAAGTG
65 T-TTTATAAATTTGCTGACTCAAGCTCATATATTCTATAT-AGGAAGTG
*
64330326 CATGGCTGGATC-AATATGTTGAATTAGGATATTTTACTGGGATTCCTTATATAAAATTTATTTT
1 CATGGCTGGATCAAAT-TGCTG-ATTAGGATATTTTACTGGGATTCCTTATATAAAATTTATTTT
* * *
64330390 TTTTTGTAAATTTGCTGACTCAAGTTCGTATATTCTATATAGGAA
64 TTTTTATAAATTTGCTGACTCAAGCTCATATATTCTATATAGGAA
64330435 AATAGCGAGT
Statistics
Matches: 98, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
112 5 0.05
113 35 0.36
114 19 0.19
115 39 0.40
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.44
Consensus pattern (111 bp):
CATGGCTGGATCAAATTGCTGATTAGGATATTTTACTGGGATTCCTTATATAAAATTTATTTTTT
TTTATAAATTTGCTGACTCAAGCTCATATATTCTATATAGGAAGTG
Found at i:64331863 original size:207 final size:210
Alignment explanation
Indices: 64331377--64332025 Score: 677
Period size: 207 Copynumber: 3.1 Consensus size: 210
64331367 CATTTTTGTG
* *
64331377 GATACGAGGACAAACCTCCAAAGATGCTCCGAATGCATAGAAAACCTTTAAAAAAAGT-T-ATCT
1 GATATGAGGACATACCTCCAAAGATGCTCCGAATGCATAGAAAACCTTTAAAAAAA-TATGATCT
*
64331440 ATATCTGTGTCTGACACTCACACTTGAGTCCGAGTCAGAGGTTCACGAACCAC---CAGT-T-AT
65 ATATCTGTGTCTGACACTCACACTTGAGTCC--G-CAGAGGTTCACGAACCACAATTAGTGTAAT
* ** *
64331500 TTTATTGTATATT-GTTGTTCATTACTCACTGTTCATGTTGCTCCAACTTTTCATTTTTCTGGAT
127 TTTATTGT-TGTTCGTTACTCATTACTCACTGTCCATGTTGCTCCAACTTTTCATTTTTCTGGAT
* *
64331564 ATACCTGTGTTTTTAACAAATG
191 ATACCTATG--TTTAACAAATC
* *
64331586 GATATGAGGACGTACCTCCAAAGATGCTCCGAATGCATAGAAAACCTTTTAAAAAAA-ATGATCC
1 GATATGAGGACATACCTCCAAAGATGCTCCGAATGCATAGAAAACC-TTTAAAAAAATATGATCT
*
64331650 ATATCTGTGTTTGACACTCACACTTGAGT-C-CA-AGGTTCACGAACCATCAATTAGTGTAATTT
65 ATATCTGTGTCTGACACTCACACTTGAGTCCGCAGAGGTTCACGAACCA-CAATTAGTGTAATTT
* * ** * *
64331712 TATTGTTGTTCGTTACTCATTGATTGTCATTGTCCATGTTGCTCTGACTTTTTATTTTTGTGGAT
129 TATTGTTGTTCGTTACTCATT-A--CTCACTGTCCATGTTGCTCCAACTTTTCATTTTTCTGGAT
* *
64331777 ATA-CTATG-TTGA-ATA-C
191 ATACCTATGTTTAACAAATC
*
64331793 GATATGAGGACATACCTCCAAAGATGCTCCAAATGCATAGAAAACC-TTAAAAAGAATATGATCT
1 GATATGAGGACATACCTCCAAAGATGCTCCGAATGCATAGAAAACCTTTAAAAA-AATATGATCT
* *
64331857 ATATCTGTGTCTGACACT--CACTTGAGTCCGAGTCAGAGGTTCATGAACCACCAATTAGTGTAT
65 ATATCTGTGTCTGACACTCACACTTGAGTCC--G-CAGAGGTTCACGAACCA-CAATTAGTGTAA
* * * *
64331920 TTTTATTGTTGTTCG-------TTACTCACTGTTCATGTTGCTCCGATTTTTCATTTTTGTGGAT
126 TTTTATTGTTGTTCGTTACTCATTACTCACTGTCCATGTTGCTCCAACTTTTCATTTTTCTGGAT
* * *
64331978 ATACCTGTGTTCAACACATGC
191 ATACCTATGTTTAACAAAT-C
64331999 G-TATGAGGACATACCTCCAAAGATGCT
1 GATATGAGGACATACCTCCAAAGATGCT
64332026 ATTGATGGCA
Statistics
Matches: 377, Mismatches: 37, Indels: 56
0.80 0.08 0.12
Matches are distributed among these distances:
201 37 0.10
202 4 0.01
203 3 0.01
204 18 0.05
205 45 0.12
206 5 0.01
207 67 0.18
208 5 0.01
209 52 0.14
210 61 0.16
211 40 0.11
212 4 0.01
213 36 0.10
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.35
Consensus pattern (210 bp):
GATATGAGGACATACCTCCAAAGATGCTCCGAATGCATAGAAAACCTTTAAAAAAATATGATCTA
TATCTGTGTCTGACACTCACACTTGAGTCCGCAGAGGTTCACGAACCACAATTAGTGTAATTTTA
TTGTTGTTCGTTACTCATTACTCACTGTCCATGTTGCTCCAACTTTTCATTTTTCTGGATATACC
TATGTTTAACAAATC
Done.