Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 220 of 221
Found at i:64343066 original size:25 final size:25
Alignment explanation
Indices: 64343032--64343082 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
64343022 CATTTTTAAC
64343032 CAAAAAATAGAAAAGAATATTGATT
1 CAAAAAATAGAAAAGAATATTGATT
64343057 CAAAAAATAGAAAAGAATATTGATT
1 CAAAAAATAGAAAAGAATATTGATT
64343082 C
1 C
64343083 GAAGATTCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.59, C:0.06, G:0.12, T:0.24
Consensus pattern (25 bp):
CAAAAAATAGAAAAGAATATTGATT
Found at i:64343882 original size:39 final size:39
Alignment explanation
Indices: 64343839--64343940 Score: 141
Period size: 39 Copynumber: 2.6 Consensus size: 39
64343829 TCCCTTAGAG
*
64343839 AAATTTATGTTATTTGAATCCGGAGTCACTTCCTGAAAA
1 AAATTTATGTTATTTGAATTCGGAGTCACTTCCTGAAAA
* * * * *
64343878 AAATTTATGTTATTTAAATTCAGAGTCATTTCCTTAAAG
1 AAATTTATGTTATTTGAATTCGGAGTCACTTCCTGAAAA
*
64343917 AAATTTATGTTATTCGAATTCGGA
1 AAATTTATGTTATTTGAATTCGGA
64343941 TTTATGAGTA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 54 1.00
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.40
Consensus pattern (39 bp):
AAATTTATGTTATTTGAATTCGGAGTCACTTCCTGAAAA
Found at i:64345176 original size:31 final size:31
Alignment explanation
Indices: 64345138--64345197 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
64345128 CTAATGACTG
* *
64345138 AAAAAGAAAAA-TTCGAATATTTGGGTGACCA
1 AAAAAGAAAAAGTT-AAATAGTTGGGTGACCA
64345169 AAAAAGAAAAAGTTAAATAGTTGGGTGAC
1 AAAAAGAAAAAGTTAAATAGTTGGGTGAC
64345198 TACTAGTGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 24 0.92
32 2 0.08
ACGTcount: A:0.50, C:0.07, G:0.22, T:0.22
Consensus pattern (31 bp):
AAAAAGAAAAAGTTAAATAGTTGGGTGACCA
Found at i:64346180 original size:2 final size:2
Alignment explanation
Indices: 64346175--64346200 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
64346165 ATATCATGCG
64346175 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
64346201 GAGAGAGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:64351418 original size:21 final size:22
Alignment explanation
Indices: 64351378--64351420 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
64351368 TGTTAAAATT
64351378 TATTTTAAGTATTTAATATTTTG
1 TATTTTAAG-ATTTAATATTTTG
*
64351401 TATTTTAA-ATTTATTATTTT
1 TATTTTAAGATTTAATATTTT
64351421 TTATAATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
23 8 0.42
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (22 bp):
TATTTTAAGATTTAATATTTTG
Found at i:64353670 original size:15 final size:16
Alignment explanation
Indices: 64353639--64353676 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
64353629 AATAACAATA
*
64353639 TATTCAATTTGTTTTT
1 TATTTAATTTGTTTTT
*
64353655 TTTTTAATTT-TTTTT
1 TATTTAATTTGTTTTT
64353670 TATTTAA
1 TATTTAA
64353677 GAACTTACGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 11 0.58
16 8 0.42
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (16 bp):
TATTTAATTTGTTTTT
Found at i:64355150 original size:6 final size:6
Alignment explanation
Indices: 64355139--64355170 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
64355129 ACCCTTTTAA
64355139 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AA
64355171 GAGCTTTGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:64356832 original size:25 final size:25
Alignment explanation
Indices: 64356786--64356835 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
64356776 TAAAATTAAA
* *
64356786 TAAATAAATTTTTTATATAAAAAAT
1 TAAATAAAATTTTGATATAAAAAAT
64356811 TAAATAAAATTTTGA-ATGAAAAAAT
1 TAAATAAAATTTTGATAT-AAAAAAT
64356836 ATATAAGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 2 0.09
25 20 0.91
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (25 bp):
TAAATAAAATTTTGATATAAAAAAT
Found at i:64357523 original size:18 final size:18
Alignment explanation
Indices: 64357502--64357552 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 18
64357492 CTAAAATATT
64357502 TATAATTGTTTCTAAAAA
1 TATAATTGTTTCTAAAAA
*
64357520 TATAA---TTACT-AAAA
1 TATAATTGTTTCTAAAAA
64357534 TATAATTGTTTCTAGAAAA
1 TATAATTGTTTCTA-AAAA
64357553 AGTCTCAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 9
0.70 0.05 0.24
Matches are distributed among these distances:
14 9 0.35
15 4 0.15
17 4 0.15
18 5 0.19
19 4 0.15
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (18 bp):
TATAATTGTTTCTAAAAA
Found at i:64360217 original size:30 final size:30
Alignment explanation
Indices: 64360181--64360237 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
64360171 ATTAAGAAGC
* *
64360181 TCAAATTATACCA-AATTAAAGAACTAACAA
1 TCAAATTA-AACATAATAAAAGAACTAACAA
64360211 TCAAATTAAACATAATAAAAGAACTAA
1 TCAAATTAAACATAATAAAAGAACTAA
64360238 AAGCTTTCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 3 0.12
30 21 0.88
ACGTcount: A:0.60, C:0.14, G:0.04, T:0.23
Consensus pattern (30 bp):
TCAAATTAAACATAATAAAAGAACTAACAA
Found at i:64361414 original size:15 final size:15
Alignment explanation
Indices: 64361394--64361423 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
64361384 AATAATAATT
64361394 ATAATAGTAAAAATA
1 ATAATAGTAAAAATA
*
64361409 ATAATAGTAATAATA
1 ATAATAGTAAAAATA
64361424 GCTAAGTGGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
ATAATAGTAAAAATA
Found at i:64361531 original size:15 final size:15
Alignment explanation
Indices: 64361511--64361541 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
64361501 AAATATATTA
64361511 ATAATAGTAATAAAT
1 ATAATAGTAATAAAT
64361526 ATAATAGTAATAAAT
1 ATAATAGTAATAAAT
64361541 A
1 A
64361542 GAAAATAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.32
Consensus pattern (15 bp):
ATAATAGTAATAAAT
Found at i:64361841 original size:3 final size:3
Alignment explanation
Indices: 64361835--64361965 Score: 97
Period size: 3 Copynumber: 43.7 Consensus size: 3
64361825 ATAGTTGTAG
* * * * * * *
64361835 TAA TAA TAA TAG TAA GAA AAA TAG TGA TAA T-A TAA CAA TAA TAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
64361882 T-A TAA CAA -GA GAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
64361928 TGGAGA TAA TAA TAA TAA TAA TGA TAC TAA TAA TAA TA
1 T--A-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
64361966 TAAATAAAAA
Statistics
Matches: 99, Mismatches: 23, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
2 5 0.05
3 90 0.91
4 1 0.01
5 1 0.01
6 2 0.02
ACGTcount: A:0.60, C:0.02, G:0.09, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:64361879 original size:20 final size:21
Alignment explanation
Indices: 64361840--64361879 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
64361830 TGTAGTAATA
*
64361840 ATAATAGTAAGAAAAATAGTG
1 ATAATAGTAACAAAAATAGTG
*
64361861 ATAATA-TAACAATAATAGT
1 ATAATAGTAACAAAAATAGT
64361880 AATATAACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.57, C:0.03, G:0.12, T:0.28
Consensus pattern (21 bp):
ATAATAGTAACAAAAATAGTG
Found at i:64361971 original size:12 final size:11
Alignment explanation
Indices: 64361896--64361977 Score: 56
Period size: 12 Copynumber: 6.9 Consensus size: 11
64361886 ACAAGAGAAT
64361896 AATAATAATAA
1 AATAATAATAA
64361907 TAATAATAATAA
1 -AATAATAATAA
* *
64361919 TAATAGTAATGGA
1 -AATAATAAT-AA
*
64361932 GATAATAATAA
1 AATAATAATAA
* *
64361943 TAATAATGATACT
1 -AATAATAATA-A
64361956 AATAATAATATA
1 AATAATAATA-A
*
64361968 AATAAAAATA
1 AATAATAATA
64361978 TAAACAACAA
Statistics
Matches: 55, Mismatches: 12, Indels: 6
0.75 0.16 0.08
Matches are distributed among these distances:
11 1 0.02
12 53 0.96
13 1 0.02
ACGTcount: A:0.62, C:0.01, G:0.06, T:0.30
Consensus pattern (11 bp):
AATAATAATAA
Found at i:64363186 original size:16 final size:16
Alignment explanation
Indices: 64363162--64363195 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
64363152 CTAGTTGGGC
*
64363162 TTTTAGGGTTTTAATT
1 TTTTAGGGTTTAAATT
*
64363178 TTTTTGGGTTTAAATT
1 TTTTAGGGTTTAAATT
64363194 TT
1 TT
64363196 GGGTCAGATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.00, G:0.18, T:0.65
Consensus pattern (16 bp):
TTTTAGGGTTTAAATT
Found at i:64363864 original size:2 final size:2
Alignment explanation
Indices: 64363859--64363884 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
64363849 TGTGTGTGTG
64363859 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
64363885 GAGAGAGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:64363889 original size:2 final size:2
Alignment explanation
Indices: 64363884--64363924 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
64363874 ATATATATAT
64363884 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
64363925 ATTGCACTAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:64368365 original size:3 final size:3
Alignment explanation
Indices: 64368357--64368395 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
64368347 TTCATTTACT
64368357 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
64368396 ACAACAACAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:64373923 original size:46 final size:45
Alignment explanation
Indices: 64373816--64374163 Score: 358
Period size: 46 Copynumber: 7.6 Consensus size: 45
64373806 TACATATGAT
* *
64373816 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCTAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTAC
* *
64373859 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAGGCTAA
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAA-GCTAC
64373905 CACTTATCACTTTGTCACTTGATCAGATAA--GTA--T-AG----
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTAC
*
64373941 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTAC
* * * *
64373987 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAG-CTAAGCTAC
* * *
64374033 CATTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAG-CTAAGCTAC
64374085 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCT-AAGCTAC
64374137 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
64374164 AGTACTCAAA
Statistics
Matches: 266, Mismatches: 17, Indels: 41
0.82 0.05 0.13
Matches are distributed among these distances:
36 29 0.11
38 3 0.01
40 2 0.01
41 1 0.00
42 3 0.01
43 10 0.04
44 7 0.03
45 21 0.08
46 97 0.36
47 1 0.00
49 1 0.00
50 1 0.00
51 4 0.02
52 86 0.32
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (45 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTAC
Found at i:64373946 original size:36 final size:36
Alignment explanation
Indices: 64373905--64374023 Score: 130
Period size: 36 Copynumber: 3.0 Consensus size: 36
64373895 CTAAGGCTAA
64373905 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
*
64373941 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAG
1 CACTTATCACTTTGTCACTTGATCAGATAA--GTA--T--AG
*
64373983 CTACCACTTATCACTTTGTCTCTTGATCAGATAAGTATAG
1 ----CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
64374023 C
1 C
64374024 CGAAGCTATC
Statistics
Matches: 70, Mismatches: 3, Indels: 20
0.75 0.03 0.22
Matches are distributed among these distances:
36 30 0.43
38 3 0.04
40 3 0.04
42 3 0.04
44 3 0.04
46 28 0.40
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.36
Consensus pattern (36 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
Found at i:64373966 original size:82 final size:82
Alignment explanation
Indices: 64373859--64374023 Score: 294
Period size: 82 Copynumber: 2.0 Consensus size: 82
64373849 GCTAGGCTAC
*
64373859 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAGGCTAACACTTATCACTTTGTCACT
1 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTTGTCACT
64373924 TGATCAGATAAGTATAG
66 TGATCAGATAAGTATAG
* * *
64373941 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
1 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTTGTCACT
64374006 TGATCAGATAAGTATAG
66 TGATCAGATAAGTATAG
64374023 C
1 C
64374024 CGAAGCTATC
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
82 79 1.00
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (82 bp):
CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTTGTCACT
TGATCAGATAAGTATAG
Found at i:64374060 original size:52 final size:52
Alignment explanation
Indices: 64373987--64374157 Score: 252
Period size: 52 Copynumber: 3.2 Consensus size: 52
64373977 CTAAAGCTAC
* * * *
64373987 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCATTTAT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
64374040 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* ** *
64374092 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
64374144 CACTTTGTCACTTG
1 CACTTT-TCACTTG
64374158 ATCAGAAGTA
Statistics
Matches: 108, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
52 93 0.86
53 15 0.14
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
Found at i:64377945 original size:30 final size:30
Alignment explanation
Indices: 64377910--64378791 Score: 1030
Period size: 30 Copynumber: 29.3 Consensus size: 30
64377900 TTAGCACTTC
64377910 GTGGTGGTCTCTTAGGTGACGGAGGTGGAG
1 GTGGTGGTCTCTTAGGTGACGGAGGTGGAG
64377940 GTGGTGGTCTCTTAGGTGACGGAGGTGGAG
1 GTGGTGGTCTCTTAGGTGACGGAGGTGGAG
* *
64377970 GTGGTGGTCTCCTAGGTGACGGGGGTGGAG
1 GTGGTGGTCTCTTAGGTGACGGAGGTGGAG
* *
64378000 GTGGTGGTCTCCTAGGTGACGGGGGTGGAG
1 GTGGTGGTCTCTTAGGTGACGGAGGTGGAG
64378030 GTGGTGGTCTCTTAGGTGACGGAGGTGGAG
1 GTGGTGGTCTCTTAGGTGACGGAGGTGGAG
*
64378060 GTGGTGGTCTCTTAGGTGACGGGGGTGGAG
1 GTGGTGGTCTCTTAGGTGACGGAGGTGGAG
*
64378090 GTGGTGGTCTCCTT-GGTGACGAAGGTGGAG
1 GTGGTGGTCT-CTTAGGTGACGGAGGTGGAG
*
64378120 GTGGTAGTCTCTTAGGTGACGGAGGTGGAGGTGGAG
1 GTGGTGGTCTCTTAGGTGAC------GGAGGTGGAG
64378156 GTGGTGGTCTCTTAGGTGACGGAGGTGGAG
1 GTGGTGGTCTCTTAGGTGACGGAGGTGGAG
*
64378186 GTGGTGGTCTCTTAGGTGACGGGGGTGGAG
1 GTGGTGGTCTCTTAGGTGACGGAGGTGGAG
*
64378216 GTGGTGGTCTCTTAGGTGACGGGGGTGGAG
1 GTGGTGGTCTCTTAGGTGACGGAGGTGGAG
*
64378246 GTGGTGGTCTCCTT-GGTGACGAAGGTGGAG
1 GTGGTGGTCT-CTTAGGTGACGGAGGTGGAG
64378276 GTGGTGGTCTCTTAGGTGACGGAGGTGGAG
1 GTGGTGGTCTCTTAGGTGACGGAGGTGGAG
64378306 GTGGTGGTCTCTTAGGTGACGGAGGTGGAG
1 GTGGTGGTCTCTTAGGTGACGGAGGTGGAG
*
64378336 GTGGTGGTCTCCTAGGTGACGGAGGTGGAGGTGGAG
1 GTGGTGGTCTCTTAGGTGAC------GGAGGTGGAG
64378372 GTGGTGGTCTCCTT-GGTGACGGAGGTGGAG
1 GTGGTGGTCT-CTTAGGTGACGGAGGTGGAG
*
64378402 GTGATGGTCTCTTAGGTGACGGAGGTGGAG
1 GTGGTGGTCTCTTAGGTGACGGAGGTGGAG
* *** *
64378432 GTGGTGGTGATC-CCCGT---GGTGGTGGAG
1 GTGGTGGT-CTCTTAGGTGACGGAGGTGGAG
* * *
64378459 GTGGTGGTGTCTTTGGTGACGGAGGTGGGG
1 GTGGTGGTCTCTTAGGTGACGGAGGTGGAG
*
64378489 GTGGTGGTC-CCTAGGTGACGGAGGTGGAG
1 GTGGTGGTCTCTTAGGTGACGGAGGTGGAG
*
64378518 GTGGTGGTGTCCTT-GGTGACGGAGGTGGAG
1 GTGGTGGTCT-CTTAGGTGACGGAGGTGGAG
* * *
64378548 GTGGTGGTTCCCGT-GGTGACAGAGGTGGAG
1 GTGGTGG-TCTCTTAGGTGACGGAGGTGGAG
* * *
64378578 GTGGTGGTTCCCGT-GGTGACAGAGGTGGAG
1 GTGGTGG-TCTCTTAGGTGACGGAGGTGGAG
* *
64378608 GTGGTGGTCCCCTAGGTGACGGAGGTGGAG
1 GTGGTGGTCTCTTAGGTGACGGAGGTGGAG
* * *
64378638 GTGGTGGTTCCCGT-GGTGACAGAGGTGGAG
1 GTGGTGG-TCTCTTAGGTGACGGAGGTGGAG
*
64378668 GTGGTGGTC-CCTAGGTGACGGAGGTGGAG
1 GTGGTGGTCTCTTAGGTGACGGAGGTGGAG
* * *
64378697 GTGGTGGTGATC-CACGTG--GTGA--TGGAG
1 GTGGTGGT-CTCTTAGGTGACG-GAGGTGGAG
* *
64378724 GTGGTGGTGTCCTT-GGTGATGGAGGTGGAG
1 GTGGTGGTCT-CTTAGGTGACGGAGGTGGAG
* * *
64378754 GTGGTGGTCCCCTT-GGTGACGGATGTAGAG
1 GTGGTGGT-CTCTTAGGTGACGGAGGTGGAG
64378784 GTGGTGGT
1 GTGGTGGT
64378792 GGTGGAGGTC
Statistics
Matches: 757, Mismatches: 56, Indels: 78
0.85 0.06 0.09
Matches are distributed among these distances:
26 3 0.00
27 36 0.05
28 5 0.01
29 67 0.09
30 573 0.76
31 17 0.02
36 54 0.07
37 2 0.00
ACGTcount: A:0.12, C:0.11, G:0.51, T:0.26
Consensus pattern (30 bp):
GTGGTGGTCTCTTAGGTGACGGAGGTGGAG
Found at i:64378730 original size:27 final size:24
Alignment explanation
Indices: 64378692--64378756 Score: 85
Period size: 24 Copynumber: 2.6 Consensus size: 24
64378682 GTGACGGAGG
64378692 TGGAGGTGGTGGTGATCCACGTGGTGA
1 TGGAGGTGGTGGTG-T-C-CGTGGTGA
*
64378719 TGGAGGTGGTGGTGTCCTTGGTGA
1 TGGAGGTGGTGGTGTCCGTGGTGA
*
64378743 TGGAGGTGGAGGTG
1 TGGAGGTGGTGGTG
64378757 GTGGTCCCCT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
24 20 0.56
25 1 0.03
26 1 0.03
27 14 0.39
ACGTcount: A:0.12, C:0.08, G:0.52, T:0.28
Consensus pattern (24 bp):
TGGAGGTGGTGGTGTCCGTGGTGA
Found at i:64379702 original size:19 final size:21
Alignment explanation
Indices: 64379675--64379716 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
64379665 CGTTTGTTTC
64379675 AATGAAAAT-AGTTTTTGAAA
1 AATGAAAATGAGTTTTTGAAA
*
64379695 AATG-AAATGATTTTTTGAAA
1 AATGAAAATGAGTTTTTGAAA
64379715 AA
1 AA
64379717 AAAAATGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (21 bp):
AATGAAAATGAGTTTTTGAAA
Found at i:64379722 original size:20 final size:20
Alignment explanation
Indices: 64379686--64379723 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
64379676 ATGAAAATAG
**
64379686 TTTTTGAAAAATGAAATGAT
1 TTTTTGAAAAAAAAAATGAT
64379706 TTTTTGAAAAAAAAAATG
1 TTTTTGAAAAAAAAAATG
64379724 TTTACTTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (20 bp):
TTTTTGAAAAAAAAAATGAT
Found at i:64382975 original size:20 final size:21
Alignment explanation
Indices: 64382950--64382989 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
64382940 TGTAGTTACT
64382950 ATTTTATTT-TTTTATTTTTA
1 ATTTTATTTATTTTATTTTTA
64382970 ATTTTATTTATTTTATTTTT
1 ATTTTATTTATTTTATTTTT
64382990 TCCTTTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (21 bp):
ATTTTATTTATTTTATTTTTA
Found at i:64382981 original size:16 final size:14
Alignment explanation
Indices: 64382951--64382990 Score: 55
Period size: 14 Copynumber: 2.8 Consensus size: 14
64382941 GTAGTTACTA
64382951 TTTTATTTTTTTAT
1 TTTTATTTTTTTAT
64382965 TTTTAATTTTATTTA-
1 TTTT-ATTTT-TTTAT
64382980 TTTTATTTTTT
1 TTTTATTTTTT
64382991 CCTTTTTATC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 2 0.08
14 9 0.38
15 9 0.38
16 4 0.17
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTATTTTTTTAT
Found at i:64384315 original size:169 final size:169
Alignment explanation
Indices: 64384091--64384401 Score: 507
Period size: 169 Copynumber: 1.8 Consensus size: 169
64384081 TTTCTAGTCC
* * * * *
64384091 AGTCGATTTTGTTGTCTTTTGAATGCTTGCCGGCTCTTCATATTTGAATAATATCGATTTGTGCT
1 AGTCGATATTGTTATCTTTTGAATGCTTGCCGGCTCTTCAGATTCGAACAATATCGATTTGTGCT
64384156 CACGAAGCTGCGCTTAGAAAAGTAGTAGCTTATTTTTAGTTGTAAATTCAGCTTTTGAATTACTA
66 CACGAAGCTGCGCTTAGAAAAGTAGTAGCTTATTTTTAGTTGTAAATTCAGCTTTTGAATTACTA
64384221 ATGTC-TACGTTTCCTTTTTTTAAATGATCCGTCACCGCA
131 ATG-CGTACGTTTCCTTTTTTTAAATGATCCGTCACCGCA
64384260 AGTCGATATTGTTATCTTTTGAATGCTTGCCGGCTCTTCAGATTCGAACAATATCGATTTGTGCT
1 AGTCGATATTGTTATCTTTTGAATGCTTGCCGGCTCTTCAGATTCGAACAATATCGATTTGTGCT
* * * * * *
64384325 CACGAAGGTTCGCTTAGAAAATTTGTAGTTTATTTTTAGTTGTAAATTCAGCTTTTGAATTACTG
66 CACGAAGCTGCGCTTAGAAAAGTAGTAGCTTATTTTTAGTTGTAAATTCAGCTTTTGAATTACTA
64384390 ATGCGTACGTTT
131 ATGCGTACGTTT
64384402 TGATTTCTCT
Statistics
Matches: 130, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
168 1 0.01
169 129 0.99
ACGTcount: A:0.24, C:0.16, G:0.19, T:0.41
Consensus pattern (169 bp):
AGTCGATATTGTTATCTTTTGAATGCTTGCCGGCTCTTCAGATTCGAACAATATCGATTTGTGCT
CACGAAGCTGCGCTTAGAAAAGTAGTAGCTTATTTTTAGTTGTAAATTCAGCTTTTGAATTACTA
ATGCGTACGTTTCCTTTTTTTAAATGATCCGTCACCGCA
Found at i:64384560 original size:188 final size:187
Alignment explanation
Indices: 64384230--64384833 Score: 750
Period size: 188 Copynumber: 3.1 Consensus size: 187
64384220 AATGTCTACG
*
64384230 TTTCCTT-TTTTTAAATGATCCGTCACCGCAAGTCGATATTGTTATCTTTTGAATGCTTGCCGGC
1 TTTCCTTCTTTTT-AATGATCCGTCACCGCAAGTCGATATTGTTGTCTTTTGAATGCTTGCCGGC
* * *
64384294 TCTTCAGATTCGAACAATATCGATTTGTGCTCACGAAGGTTCGCTTAGAAAATTTGTAGTTTATT
65 TCTTCAGATTCGAACAATATCGATTTGTGCTCACGAAGCTGCGCTTAGAAAAGTTGTAGTTTATT
* *
64384359 TTTAGTTGTAAATTCAGCTTTTGAATTACTGATGCGTACGTTTTGATTTCTCTGTTTT
130 TTTAGTTGTAAATTCAGCTTTTGAATTACTGATGCGTACGTTCTAATTTCTCTGTTTT
* * *
64384417 TTTCCTTCCTTTTTAATGATCCATCACCGCAAGTCGATATTGTCGTCTTTTGAATGCTTACCGGC
1 TTTCCTT-CTTTTTAATGATCCGTCACCGCAAGTCGATATTGTTGTCTTTTGAATGCTTGCCGGC
*
64384482 TCTTCAGATTCGAAGAATATCGATTTGTGCTCACGAAGCTGCGCTTAGAAATA-TTGTAGTTTAT
65 TCTTCAGATTCGAACAATATCGATTTGTGCTCACGAAGCTGCGCTTAGAAA-AGTTGTAGTTTAT
* * *
64384546 TTTTACTTGTAAATTCAGCTTTTGCATTACTGATGTGTACGTTCTAATTTCTCTATTCTTTTTTG
129 TTTTAGTTGTAAATTCAGCTTTTGAATTACTGATGCGTACGTTCTAA-TT-TC---TC-----TG
64384611 AAATATTT
184 ---T-TTT
*
64384619 TTTCTTTTTTCTTTTTTAATGATCCGTCACCGCAAGTCGATATTGTTGTCTTTTGAATGCTTGCC
1 TTTC---CTTC-TTTTTAATGATCCGTCACCGCAAGTCGATATTGTTGTCTTTTGAATGCTTGCC
* * * *
64384684 GGCTCTTCAGATTCGAACAATACCGATTTGCGCTCACGAAACTGCGCCTCA-AAAAGTTGTAGTT
62 GGCTCTTCAGATTCGAACAATATCGATTTGTGCTCACGAAGCTGCG-CTTAGAAAAGTTGTAGTT
* *
64384748 TA-TTTTAGTTGTAAATTCAGCTTTTGAATTACTGATGCGTACGTTGTAATTTCTCAGTTTAT
126 TATTTTTAGTTGTAAATTCAGCTTTTGAATTACTGATGCGTACGTTCTAATTTCTCTGTTT-T
* *
64384810 TATT-ATTATTTTTTAATGATCCGT
1 T-TTCCTT-CTTTTTAATGATCCGT
64384834 TGCCATATTG
Statistics
Matches: 363, Mismatches: 28, Indels: 51
0.82 0.06 0.12
Matches are distributed among these distances:
187 7 0.02
188 165 0.45
189 8 0.02
190 4 0.01
191 3 0.01
192 2 0.01
193 2 0.01
194 1 0.00
198 2 0.01
199 2 0.01
201 1 0.00
202 9 0.02
203 2 0.01
204 45 0.12
205 107 0.29
206 3 0.01
ACGTcount: A:0.23, C:0.18, G:0.16, T:0.44
Consensus pattern (187 bp):
TTTCCTTCTTTTTAATGATCCGTCACCGCAAGTCGATATTGTTGTCTTTTGAATGCTTGCCGGCT
CTTCAGATTCGAACAATATCGATTTGTGCTCACGAAGCTGCGCTTAGAAAAGTTGTAGTTTATTT
TTAGTTGTAAATTCAGCTTTTGAATTACTGATGCGTACGTTCTAATTTCTCTGTTTT
Found at i:64389871 original size:4 final size:4
Alignment explanation
Indices: 64389862--64389889 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
64389852 TTCCTTAGTT
64389862 CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA
64389890 TATATACATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:64390888 original size:13 final size:14
Alignment explanation
Indices: 64390862--64390896 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
64390852 TATTTAAGAT
*
64390862 AAATTCAAATTTTA
1 AAATTTAAATTTTA
64390876 AAATTTAAA-TTTA
1 AAATTTAAATTTTA
64390889 AAATTTAA
1 AAATTTAA
64390897 CACTCAATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 12 0.60
14 8 0.40
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (14 bp):
AAATTTAAATTTTA
Found at i:64405889 original size:24 final size:25
Alignment explanation
Indices: 64405862--64405909 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
64405852 CAGGTAACTC
*
64405862 CGAAGAGCTAT-TATCAGGAAGTTT
1 CGAAGAGCCATATATCAGGAAGTTT
*
64405886 CGAATAGCCATATATCAGGAAGTT
1 CGAAGAGCCATATATCAGGAAGTT
64405910 CAAGCGAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (25 bp):
CGAAGAGCCATATATCAGGAAGTTT
Found at i:64406062 original size:64 final size:63
Alignment explanation
Indices: 64405945--64406067 Score: 167
Period size: 64 Copynumber: 1.9 Consensus size: 63
64405935 TTAAGAACCT
* * * *
64405945 TATATCAGGACGCTCATAAAGAGCTGCGGTATGTCTGCAATATATGCAAGATCAATACCAATCA
1 TATAACAGGACGCTCACAAAGAGCTGCGGTATGTCCGCAACATAT-CAAGATCAATACCAATCA
*
64406009 TATAACAGGACGCTCACAAAGAGCTGCGGTATGTCCGCAACACGTAT-AGGATCAATACC
1 TATAACAGGACGCTCACAAAGAGCTGCGGTATGTCCGCAACA--TATCAAGATCAATACC
64406068 GATGAGGATG
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
64 49 0.94
66 3 0.06
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (63 bp):
TATAACAGGACGCTCACAAAGAGCTGCGGTATGTCCGCAACATATCAAGATCAATACCAATCA
Found at i:64410189 original size:36 final size:36
Alignment explanation
Indices: 64410163--64410807 Score: 690
Period size: 36 Copynumber: 17.9 Consensus size: 36
64410153 CCAATTCCCC
* * *
64410163 CACCTTCAATGAACCAACCTTTACCTCCACCTCTGT
1 CACCTCCAATGAACCAACCTTCACCTCCACCTCTCT
*
64410199 CACCTCCAATGAACCAACCATT-ACCTCCACCTTTCT
1 CACCTCCAATGAACCAACC-TTCACCTCCACCTCTCT
** *
64410235 CACCTCCAACAAACCAACCTTCACCTCCACCTCTGT
1 CACCTCCAATGAACCAACCTTCACCTCCACCTCTCT
64410271 CACCTCCAATGAACCAACCTTCACCTCCACC-CT-T
1 CACCTCCAATGAACCAACCTTCACCTCCACCTCTCT
*
64410305 GCCACCTCCAATGAACCAACCTTCACCTCCACCTTTCT
1 --CACCTCCAATGAACCAACCTTCACCTCCACCTCTCT
* * * * *
64410343 CACCACCAATGAACGAACCATCACCTCCACCCCTGT
1 CACCTCCAATGAACCAACCTTCACCTCCACCTCTCT
* * *
64410379 CACCTCCAATGAACCAACCTTCACCTCTACCCCTAT
1 CACCTCCAATGAACCAACCTTCACCTCCACCTCTCT
* *
64410415 CACCTCCAATGAATCAACCTTCACCTCCACCCCTGC-
1 CACCTCCAATGAACCAACCTTCACCTCCACCTCT-CT
* *
64410451 CACCTCCAATGAACCAACCTTCATCTCCACCTTTCT
1 CACCTCCAATGAACCAACCTTCACCTCCACCTCTCT
* * * * **
64410487 CACCACCAATGAACGAACCATCACCTCCACCCCTAG
1 CACCTCCAATGAACCAACCTTCACCTCCACCTCTCT
* * *
64410523 CACCTCCAATGAATCAACCTTCACCTCCACATTTCT
1 CACCTCCAATGAACCAACCTTCACCTCCACCTCTCT
* * * * *
64410559 CACCACCAACGAACCAACCTTTACCTCCACCCCTGT
1 CACCTCCAATGAACCAACCTTCACCTCCACCTCTCT
* *
64410595 CACCTCCAATGAACCAACCTTTACCTCCACC-CTTGT
1 CACCTCCAATGAACCAACCTTCACCTCCACCTC-TCT
* * *
64410631 CACCTCCAATAAACCAACCTTCACCTTCACCTTTCT
1 CACCTCCAATGAACCAACCTTCACCTCCACCTCTCT
* ** * *
64410667 CACCACCAATGAATGAACCATCACCTCCACCTTTCT
1 CACCTCCAATGAACCAACCTTCACCTCCACCTCTCT
* * *
64410703 CACCTCCAATGGACCAACCTTCACCTCCATCTTTCT
1 CACCTCCAATGAACCAACCTTCACCTCCACCTCTCT
* * * * *
64410739 CACCACCAATGAACAAACCATCACCTTCACC-CTTGT
1 CACCTCCAATGAACCAACCTTCACCTCCACCTC-TCT
* * * *
64410775 CACCTCCAATGAAACAACATTCACATCGACCTC
1 CACCTCCAATGAACCAACCTTCACCTCCACCTC
64410808 CACCTTCATC
Statistics
Matches: 509, Mismatches: 88, Indels: 23
0.82 0.14 0.04
Matches are distributed among these distances:
34 1 0.00
35 6 0.01
36 497 0.98
37 4 0.01
38 1 0.00
ACGTcount: A:0.28, C:0.45, G:0.05, T:0.22
Consensus pattern (36 bp):
CACCTCCAATGAACCAACCTTCACCTCCACCTCTCT
Found at i:64410311 original size:108 final size:108
Alignment explanation
Indices: 64410163--64410807 Score: 767
Period size: 108 Copynumber: 6.0 Consensus size: 108
64410153 CCAATTCCCC
* *
64410163 CACCTTCAATGAACCAACCTTTACCTCCA-CCTCTGTCACCTCCAATGAACCAACCATT-ACCTC
1 CACCTCCAATGAACCAACCTTCACCTCCACCCT-TGTCACCTCCAATGAACCAACC-TTCACCTC
* **
64410226 CACCTTTCTCACCTCCAACAAACCAACCTTCACCTCCACCTCTGT
64 CACCTTTCTCACCACCAATGAACCAACCTTCACCTCCACCTCTGT
*
64410271 CACCTCCAATGAACCAACCTTCACCTCCACCCTTGCCACCTCCAATGAACCAACCTTCACCTCCA
1 CACCTCCAATGAACCAACCTTCACCTCCACCCTTGTCACCTCCAATGAACCAACCTTCACCTCCA
* * *
64410336 CCTTTCTCACCACCAATGAACGAACCATCACCTCCACCCCTGT
66 CCTTTCTCACCACCAATGAACCAACCTTCACCTCCACCTCTGT
* * * *
64410379 CACCTCCAATGAACCAACCTTCACCTCTACCCCTATCACCTCCAATGAATCAACCTTCACCTCCA
1 CACCTCCAATGAACCAACCTTCACCTCCACCCTTGTCACCTCCAATGAACCAACCTTCACCTCCA
* * * * * *
64410444 CCCCTGC-CACCTCCAATGAACCAACCTTCATCTCCACCTTTCT
66 -CCTTTCTCACCACCAATGAACCAACCTTCACCTCCACCTCTGT
* * * * *
64410487 CACCACCAATGAACGAACCATCACCTCCACCCCTAG-CACCTCCAATGAATCAACCTTCACCTCC
1 CACCTCCAATGAACCAACCTTCACCTCCA-CCCTTGTCACCTCCAATGAACCAACCTTCACCTCC
* * * *
64410551 ACATTTCTCACCACCAACGAACCAACCTTTACCTCCACCCCTGT
65 ACCTTTCTCACCACCAATGAACCAACCTTCACCTCCACCTCTGT
* * *
64410595 CACCTCCAATGAACCAACCTTTACCTCCACCCTTGTCACCTCCAATAAACCAACCTTCACCTTCA
1 CACCTCCAATGAACCAACCTTCACCTCCACCCTTGTCACCTCCAATGAACCAACCTTCACCTCCA
** * * *
64410660 CCTTTCTCACCACCAATGAATGAACCATCACCTCCACCTTTCT
66 CCTTTCTCACCACCAATGAACCAACCTTCACCTCCACCTCTGT
* * * * * * * *
64410703 CACCTCCAATGGACCAACCTTCACCTCCATCTTTCTCACCACCAATGAACAAACCATCACCTTCA
1 CACCTCCAATGAACCAACCTTCACCTCCACCCTTGTCACCTCCAATGAACCAACCTTCACCTCCA
* * * * * * *
64410768 CCCTTGTCACCTCCAATGAAACAACATTCACATCGACCTC
66 CCTTTCTCACCACCAATGAACCAACCTTCACCTCCACCTC
64410808 CACCTTCATC
Statistics
Matches: 455, Mismatches: 76, Indels: 12
0.84 0.14 0.02
Matches are distributed among these distances:
107 10 0.02
108 435 0.96
109 10 0.02
ACGTcount: A:0.28, C:0.45, G:0.05, T:0.22
Consensus pattern (108 bp):
CACCTCCAATGAACCAACCTTCACCTCCACCCTTGTCACCTCCAATGAACCAACCTTCACCTCCA
CCTTTCTCACCACCAATGAACCAACCTTCACCTCCACCTCTGT
Found at i:64410404 original size:21 final size:21
Alignment explanation
Indices: 64410378--64410443 Score: 65
Period size: 21 Copynumber: 3.4 Consensus size: 21
64410368 TCCACCCCTG
64410378 TCACCTCCAATGAACCAACCT
1 TCACCTCCAATGAACCAACCT
64410399 TCACCT-C--T--ACC--CCT
1 TCACCTCCAATGAACCAACCT
*
64410413 ATCACCTCCAATGAATCAACCT
1 -TCACCTCCAATGAACCAACCT
64410435 TCACCTCCA
1 TCACCTCCA
64410444 CCCCTGCCAC
Statistics
Matches: 36, Mismatches: 1, Indels: 16
0.68 0.02 0.30
Matches are distributed among these distances:
14 3 0.08
15 6 0.17
16 4 0.11
18 2 0.06
20 3 0.08
21 15 0.42
22 3 0.08
ACGTcount: A:0.29, C:0.45, G:0.03, T:0.23
Consensus pattern (21 bp):
TCACCTCCAATGAACCAACCT
Found at i:64410870 original size:45 final size:45
Alignment explanation
Indices: 64410803--64410940 Score: 222
Period size: 45 Copynumber: 3.1 Consensus size: 45
64410793 ATTCACATCG
* *
64410803 ACCTCCACCTTCATCTCAATCACCAAGGAGGACACCACCACCACC
1 ACCTCCACCTTCAACTCCATCACCAAGGAGGACACCACCACCACC
*
64410848 GCCTCCACCTTCAACTCCATCACCAAGGAGGACACCACCACCACC
1 ACCTCCACCTTCAACTCCATCACCAAGGAGGACACCACCACCACC
* * *
64410893 ACCTCCACCTTCAGCTCCATTACCAAGGAGGACACCACCACCTCC
1 ACCTCCACCTTCAACTCCATCACCAAGGAGGACACCACCACCACC
64410938 ACC
1 ACC
64410941 ACCAAGGACG
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 86 1.00
ACGTcount: A:0.29, C:0.48, G:0.10, T:0.13
Consensus pattern (45 bp):
ACCTCCACCTTCAACTCCATCACCAAGGAGGACACCACCACCACC
Found at i:64412105 original size:21 final size:21
Alignment explanation
Indices: 64412064--64412106 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
64412054 TTTTTTTAAC
* *
64412064 TTTGAATTCTTCTTAAGTTTT
1 TTTGAATACTTCTTAAATTTT
64412085 TTTGAATAC-TCTTATAATTTT
1 TTTGAATACTTCTTA-AATTTT
64412106 T
1 T
64412107 AAATTAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.23, C:0.09, G:0.07, T:0.60
Consensus pattern (21 bp):
TTTGAATACTTCTTAAATTTT
Found at i:64422290 original size:35 final size:35
Alignment explanation
Indices: 64422242--64422448 Score: 237
Period size: 35 Copynumber: 6.1 Consensus size: 35
64422232 TTCACTTGTC
* * *
64422242 TTTTCTTGCAGGGAATATTTCCTGTTCACGCATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
* ** * *
64422277 TTCTGTTATAGGGAATCTTTCCTGTTCA--CATCA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
*
64422310 -TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
* *
64422344 TTTTGTTGCAGGAAATCTCTCCTGTTCACGGATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
*
64422379 TTTTGTTGCAGGGAATCTCTCCTGTTCA--CATCA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
* * *
64422412 -TTTCTTGCAGGGAATCTCTCCTGTTCATGTATTA
1 TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
64422446 TTT
1 TTT
64422449 CTTTTTGGAC
Statistics
Matches: 145, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
32 48 0.33
33 7 0.05
34 7 0.05
35 83 0.57
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.42
Consensus pattern (35 bp):
TTTTGTTGCAGGGAATCTCTCCTGTTCACGCATTA
Found at i:64422361 original size:67 final size:69
Alignment explanation
Indices: 64422242--64422438 Score: 251
Period size: 67 Copynumber: 2.9 Consensus size: 69
64422232 TTCACTTGTC
* * * ** *
64422242 TTTTCTTGCAGGGAATATTTCCTGTTCACGCATTATTCTGTTATAGGGAATCTTTCCTGTTCAC-
1 TTTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACG
64422306 ATCA
66 ATCA
*
64422310 -TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGAAATCTCTCCTGTTCACG
1 TTTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCAC-
*
64422374 GATTA
65 GATCA
* * *
64422379 TTTTGTTGCAGGGAATCTCTCCTGTTCA--CATCA-TTTCTTGCAGGGAATCTCTCCTGTTCA
1 TTTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCA
64422439 TGTATTATTT
Statistics
Matches: 114, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
67 81 0.71
68 4 0.04
69 3 0.03
70 26 0.23
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.41
Consensus pattern (69 bp):
TTTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACG
ATCA
Found at i:64422423 original size:102 final size:102
Alignment explanation
Indices: 64422242--64422448 Score: 315
Period size: 102 Copynumber: 2.0 Consensus size: 102
64422232 TTCACTTGTC
* * * *
64422242 TTTTCTTGCAGGGAATATTTCCTGTTCACGCATTATTCTGTTATAGGGAATCTTTCCTGTTCACA
1 TTTTCTTGCAGGAAATATCTCCTGTTCACGCATTATTCTGTTACAGGGAATCTCTCCTGTTCACA
64422307 TCATTTCTTGCAGGGAATCTCTCCTGTTCACGCATTA
66 TCATTTCTTGCAGGGAATCTCTCCTGTTCACGCATTA
* * * * *
64422344 TTTTGTTGCAGGAAATCTCTCCTGTTCACGGATTATTTTGTTGCAGGGAATCTCTCCTGTTCACA
1 TTTTCTTGCAGGAAATATCTCCTGTTCACGCATTATTCTGTTACAGGGAATCTCTCCTGTTCACA
* *
64422409 TCATTTCTTGCAGGGAATCTCTCCTGTTCATGTATTA
66 TCATTTCTTGCAGGGAATCTCTCCTGTTCACGCATTA
64422446 TTT
1 TTT
64422449 CTTTTTGGAC
Statistics
Matches: 94, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
102 94 1.00
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.42
Consensus pattern (102 bp):
TTTTCTTGCAGGAAATATCTCCTGTTCACGCATTATTCTGTTACAGGGAATCTCTCCTGTTCACA
TCATTTCTTGCAGGGAATCTCTCCTGTTCACGCATTA
Found at i:64425278 original size:21 final size:22
Alignment explanation
Indices: 64425248--64425292 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
64425238 GAGCAAATTG
64425248 TTGATTCTATTTCCTTTTTG-AT
1 TTGATTCTA-TTCCTTTTTGTAT
*
64425270 TTGA-TCTATTCTTTTTTGTAT
1 TTGATTCTATTCCTTTTTGTAT
64425291 TT
1 TT
64425293 CTCTTTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 9 0.43
21 8 0.38
22 4 0.19
ACGTcount: A:0.13, C:0.11, G:0.09, T:0.67
Consensus pattern (22 bp):
TTGATTCTATTCCTTTTTGTAT
Found at i:64433204 original size:22 final size:22
Alignment explanation
Indices: 64433178--64433222 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
64433168 TTCAGCAAAG
64433178 TTTCCATCTTCAGTCTGTTTGT
1 TTTCCATCTTCAGTCTGTTTGT
64433200 TTTCCATCTTCAGTCTGTTTGT
1 TTTCCATCTTCAGTCTGTTTGT
64433222 T
1 T
64433223 CTCGCTCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.09, C:0.22, G:0.13, T:0.56
Consensus pattern (22 bp):
TTTCCATCTTCAGTCTGTTTGT
Found at i:64436667 original size:231 final size:230
Alignment explanation
Indices: 64436046--64436732 Score: 796
Period size: 231 Copynumber: 3.0 Consensus size: 230
64436036 GGCTCTTGCA
* * * * *
64436046 TTTT-ACTATGTACAAAGGTTTCAGTCACAGTAGCAACTGCATCAAT-TCCGTCCTTATTCTTCC
1 TTTTAACTATGTTCAAGGGTTTCAGTCACAGTAGCAACTGCAT-TATCT-CATCCTTGTTC-T--
* * * * *
64436109 TCTTGTGTTTATCTTCCCTAA-CCTTTTCTGCTTCCCCATTGTTCCCCAAATTCACCACCTTACT
61 TCTTGTGTTTATCTTTCCTAACCCTTTT-TGCTTCCCCATTGTTCTCCAAGTTCATCACCTTGCT
* *
64436173 ACTTTCTTTTTCTGCATTCTCTTTTCCACCTAAACAAGTTTCCATTGAAATCTCTTCAACTACAT
125 ACTTTCTTGTTCTGCGTTCTCTTTTCCACCTAAACAAGTTTCCATTGAAATCTCTTCAACTACAT
64436238 CTTTACTTTTCTTATGC---------GCCTT-TGGAGATTCC
190 CTTTACTTTTCTTATGCTTTTTATGAGCCTTCT-GAGATTCC
* * * * *
64436270 TTTTTACTATGTTCAAGGGTTCCGGTCACAGTACCAACTGCATTAGTCCCATCCTTG-TC--CTT
1 TTTTAACTATGTTCAAGGGTTTCAGTCACAGTAGCAACTGCATTA-TCTCATCCTTGTTCTTCTT
** *
64436332 GTGTTTATCTTTCCCGACCCTTTTTGCTTCCCCGTTGTTCTCCAAGTTCATCACCTTGCTACTTT
65 GTGTTTATCTTTCCTAACCCTTTTTGCTTCCCCATTGTTCTCCAAGTTCATCACCTTGCTACTTT
* * ** * *
64436397 CTTGTTCTGTGTTCTTTTTTCCACCTTTACAACTTTCCATTGAAATCTCTTTAACCT-CATCTTT
130 CTTGTTCTGCGTTCTCTTTTCCACCTAAACAAGTTTCCATTGAAATCTCTTCAA-CTACATCTTT
* *
64436461 ACTTTTCTTATGCTTTTTATGAGCCTTCTTAGAGTCC
194 ACTTTTCTTATGCTTTTTATGAGCCTTCTGAGATTCC
** *
64436498 TTTTAACTATGTTTGAGGGTTTCAGTCACAGTAGCAACTGCATTGATCTCATCCCTGTTCTTCTT
1 TTTTAACTATGTTCAAGGGTTTCAGTCACAGTAGCAACTGCATT-ATCTCATCCTTGTTCTTCTT
* * * *
64436563 ATGTTTGTCTTTCTTAACCCTTTTTGCTTCCCCATTGTTCTCCAAGTTCATCGCCTTGCTACTTT
65 GTGTTTATCTTTCCTAACCCTTTTTGCTTCCCCATTGTTCTCCAAGTTCATCACCTTGCTACTTT
* * *
64436628 CTTGTTCTGCGTTCTCTTTTCCACCCAAACAAGTTTCCATTGGAATCTCTTCAACTGCATCTTTA
130 CTTGTTCTGCGTTCTCTTTTCCACCTAAACAAGTTTCCATTGAAATCTCTTCAACTACATCTTTA
* **
64436693 CTTGTCTTATGCTTTTTATGAGTGTTCTGAGATTCC
195 CTTTTCTTATGCTTTTTATGAGCCTTCTGAGATTCC
64436729 TTTT
1 TTTT
64436733 TATCTGTATC
Statistics
Matches: 388, Mismatches: 55, Indels: 33
0.82 0.12 0.07
Matches are distributed among these distances:
219 119 0.31
220 8 0.02
224 7 0.02
225 40 0.10
228 58 0.15
229 4 0.01
230 2 0.01
231 150 0.39
ACGTcount: A:0.18, C:0.27, G:0.11, T:0.44
Consensus pattern (230 bp):
TTTTAACTATGTTCAAGGGTTTCAGTCACAGTAGCAACTGCATTATCTCATCCTTGTTCTTCTTG
TGTTTATCTTTCCTAACCCTTTTTGCTTCCCCATTGTTCTCCAAGTTCATCACCTTGCTACTTTC
TTGTTCTGCGTTCTCTTTTCCACCTAAACAAGTTTCCATTGAAATCTCTTCAACTACATCTTTAC
TTTTCTTATGCTTTTTATGAGCCTTCTGAGATTCC
Found at i:64462434 original size:22 final size:22
Alignment explanation
Indices: 64462409--64462455 Score: 53
Period size: 22 Copynumber: 2.1 Consensus size: 22
64462399 CAAATTTAAA
64462409 TTTAAATATTTA-TACT-TTTATT
1 TTTAAA-ATTTAGT-CTCTTTATT
*
64462431 TTTAGAATTTAGTCTCTTTATT
1 TTTAAAATTTAGTCTCTTTATT
64462453 TTT
1 TTT
64462456 CTGATTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.26, C:0.06, G:0.04, T:0.64
Consensus pattern (22 bp):
TTTAAAATTTAGTCTCTTTATT
Found at i:64469342 original size:125 final size:125
Alignment explanation
Indices: 64469198--64469437 Score: 367
Period size: 125 Copynumber: 1.9 Consensus size: 125
64469188 TAATTGAGCT
* * *
64469198 CGAGCTTGAGTAGCTCAATTATATCTTGAACCAAGCTCAAGTTTATAATTAAATGTTCG-ATCAA
1 CGAGCTTGAGTAGCTCAATTATATCTTGAACCAAACTCAAATTTAAAATTAAATGTT-GAATCAA
* * * *
64469262 GCTCAAGCCAAGTGTCTTTTGCAAATATT-AACTTGAGTTCGAGTTCGAGCTTGAATATATA
65 GCTCAAGCCAAGTATCTTTTGCAAAT-TTCAAATCGAGTTCGAGTTCAAGCTTGAATATATA
* *
64469323 CGAGCTTGAGTAGCTCAATTATATTTTGAACTAAACTCAAATTTAAAATTAAATGTTGAATCAAG
1 CGAGCTTGAGTAGCTCAATTATATCTTGAACCAAACTCAAATTTAAAATTAAATGTTGAATCAAG
64469388 CTCAAGCCAAGTATCTTTTGCAAATTTCAAATCGAGTTCGAGTTCAAGCT
66 CTCAAGCCAAGTATCTTTTGCAAATTTCAAATCGAGTTCGAGTTCAAGCT
64469438 CGAACTTAGC
Statistics
Matches: 104, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
124 3 0.03
125 101 0.97
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (125 bp):
CGAGCTTGAGTAGCTCAATTATATCTTGAACCAAACTCAAATTTAAAATTAAATGTTGAATCAAG
CTCAAGCCAAGTATCTTTTGCAAATTTCAAATCGAGTTCGAGTTCAAGCTTGAATATATA
Found at i:64474768 original size:21 final size:22
Alignment explanation
Indices: 64474742--64474788 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
64474732 CTCTGCTCAA
*
64474742 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
64474763 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
64474785 ACTC
1 ACTC
64474789 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:64484561 original size:21 final size:20
Alignment explanation
Indices: 64484537--64484575 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
64484527 TTTGGTCTAT
*
64484537 GGTTTATGGTTTAAAGGTTGG
1 GGTTTAAGGTTT-AAGGTTGG
64484558 GGTTTAAGGTTTAAGGTT
1 GGTTTAAGGTTTAAGGTT
64484576 AATATGTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.21, C:0.00, G:0.36, T:0.44
Consensus pattern (20 bp):
GGTTTAAGGTTTAAGGTTGG
Found at i:64487236 original size:13 final size:13
Alignment explanation
Indices: 64487218--64487254 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
64487208 TTGAATGTTT
64487218 ATTAAAATATGTA
1 ATTAAAATATGTA
*
64487231 ATTAAAATACGTA
1 ATTAAAATATGTA
64487244 ATTAAAA-ATGT
1 ATTAAAATATGT
64487255 TTCCATGGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 3 0.14
13 19 0.86
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.35
Consensus pattern (13 bp):
ATTAAAATATGTA
Found at i:64487844 original size:9 final size:9
Alignment explanation
Indices: 64487830--64487919 Score: 69
Period size: 9 Copynumber: 10.0 Consensus size: 9
64487820 TAAAAATCAT
64487830 AATTAAGTA
1 AATTAAGTA
*
64487839 AATTAAATA
1 AATTAAGTA
*
64487848 ACTTACA-TA
1 AATTA-AGTA
*
64487857 AATTAAGTT
1 AATTAAGTA
*
64487866 AATTAAATA
1 AATTAAGTA
*
64487875 ACTTACA-TA
1 AATTA-AGTA
64487884 AATTAAGTA
1 AATTAAGTA
*
64487893 AATTAAATA
1 AATTAAGTA
*
64487902 ACTTACA-TA
1 AATTA-AGTA
64487911 AATTAAGTA
1 AATTAAGTA
64487920 TCTTACATAA
Statistics
Matches: 64, Mismatches: 11, Indels: 12
0.74 0.13 0.14
Matches are distributed among these distances:
8 3 0.05
9 58 0.91
10 3 0.05
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.34
Consensus pattern (9 bp):
AATTAAGTA
Found at i:64487864 original size:27 final size:27
Alignment explanation
Indices: 64487830--64488215 Score: 370
Period size: 27 Copynumber: 14.0 Consensus size: 27
64487820 TAAAAATCAT
64487830 AATTAAGTAAATTAAATAACTTACATA
1 AATTAAGTAAATTAAATAACTTACATA
*
64487857 AATTAAGTTAATTAAATAACTTACATA
1 AATTAAGTAAATTAAATAACTTACATA
64487884 AATTAAGTAAATTAAATAACTTACATA
1 AATTAAGTAAATTAAATAACTTACATA
** *
64487911 AATTAAGTATCTTACATAACTTACATA
1 AATTAAGTAAATTAAATAACTTACATA
* ** *
64487938 AATTAAATATCTTACATAACTTACATA
1 AATTAAGTAAATTAAATAACTTACATA
*
64487965 AATTAAGTAAATTAAATAACTTGCATA
1 AATTAAGTAAATTAAATAACTTACATA
* *
64487992 ACTTACA-TAAATTAAATATCTTACATA
1 AATTA-AGTAAATTAAATAACTTACATA
* *
64488019 ATTTACA-TAAATTAAATATCTTACATA
1 AATTA-AGTAAATTAAATAACTTACATA
*
64488046 ACTTACA-TAAATTAAATATCTTACATAACTTACATA
1 AATTA-AGTAAA-T---TA----A-ATAACTTACATA
*
64488082 AATTAAGTAAATTAAATAACTTGCATA
1 AATTAAGTAAATTAAATAACTTACATA
* * *
64488109 ACTTACGTAAATTAAATATCTTACATA
1 AATTAAGTAAATTAAATAACTTACATA
* *
64488136 ATTTACA-TAAATTAAATATCTTACATA
1 AATTA-AGTAAATTAAATAACTTACATA
* * *
64488163 ACTTACA-TAAATTAAATATCTTGCATA
1 AATTA-AGTAAATTAAATAACTTACATA
* *
64488190 ATTTACA-TAAATTAAATATCTTACAT
1 AATTA-AGTAAATTAAATAACTTACAT
64488216 TACTTACATA
Statistics
Matches: 318, Mismatches: 29, Indels: 24
0.86 0.08 0.06
Matches are distributed among these distances:
27 289 0.91
28 3 0.01
31 2 0.01
32 2 0.01
35 3 0.01
36 19 0.06
ACGTcount: A:0.49, C:0.12, G:0.03, T:0.37
Consensus pattern (27 bp):
AATTAAGTAAATTAAATAACTTACATA
Found at i:64488231 original size:117 final size:117
Alignment explanation
Indices: 64487872--64488204 Score: 585
Period size: 117 Copynumber: 2.8 Consensus size: 117
64487862 AGTTAATTAA
* ** * * *
64487872 ATAACTTACATAAATTAAGTAAATTAAATAACTTACATAAATTAAGTATCTTACATAACTTACAT
1 ATAACTTACATAAATTAAATATCTTACATAATTTACATAAATTAAATATCTTACATAACTTACAT
64487937 AAATTAAATATCTTACATAACTTACATAAATTAAGTAAATTAAATAACTTGC
66 AAATTAAATATCTTACATAACTTACATAAATTAAGTAAATTAAATAACTTGC
64487989 ATAACTTACATAAATTAAATATCTTACATAATTTACATAAATTAAATATCTTACATAACTTACAT
1 ATAACTTACATAAATTAAATATCTTACATAATTTACATAAATTAAATATCTTACATAACTTACAT
64488054 AAATTAAATATCTTACATAACTTACATAAATTAAGTAAATTAAATAACTTGC
66 AAATTAAATATCTTACATAACTTACATAAATTAAGTAAATTAAATAACTTGC
*
64488106 ATAACTTACGTAAATTAAATATCTTACATAATTTACATAAATTAAATATCTTACATAACTTACAT
1 ATAACTTACATAAATTAAATATCTTACATAATTTACATAAATTAAATATCTTACATAACTTACAT
* *
64488171 AAATTAAATATCTTGCATAATTTACATAAATTAA
66 AAATTAAATATCTTACATAACTTACATAAATTAA
64488205 ATATCTTACA
Statistics
Matches: 207, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
117 207 1.00
ACGTcount: A:0.49, C:0.12, G:0.02, T:0.37
Consensus pattern (117 bp):
ATAACTTACATAAATTAAATATCTTACATAATTTACATAAATTAAATATCTTACATAACTTACAT
AAATTAAATATCTTACATAACTTACATAAATTAAGTAAATTAAATAACTTGC
Found at i:64488260 original size:7 final size:7
Alignment explanation
Indices: 64488248--64488301 Score: 63
Period size: 7 Copynumber: 7.1 Consensus size: 7
64488238 TACATGGGGC
64488248 ATACATA
1 ATACATA
64488255 ATACATA
1 ATACATA
64488262 ATACATA
1 ATACATA
*
64488269 ATACAGA
1 ATACATA
64488276 ACTTACATA
1 A--TACATA
64488285 ACTTACATA
1 A--TACATA
64488294 ATACATA
1 ATACATA
64488301 A
1 A
64488302 AAATATATCA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
7 28 0.65
9 15 0.35
ACGTcount: A:0.54, C:0.17, G:0.02, T:0.28
Consensus pattern (7 bp):
ATACATA
Found at i:64493827 original size:21 final size:21
Alignment explanation
Indices: 64493802--64493870 Score: 84
Period size: 21 Copynumber: 3.3 Consensus size: 21
64493792 CAGCAACTTA
* * *
64493802 AAGCAGATGCGGCAGCGAGGG
1 AAGCAGAGGCCGCAGCGAGAG
** *
64493823 AAGCAGAGGCTACAGCAAGAG
1 AAGCAGAGGCCGCAGCGAGAG
64493844 AAGCAGAGGCCGCAGCGAGAG
1 AAGCAGAGGCCGCAGCGAGAG
64493865 AAGCAG
1 AAGCAG
64493871 CGAGAGAAGC
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.36, C:0.20, G:0.41, T:0.03
Consensus pattern (21 bp):
AAGCAGAGGCCGCAGCGAGAG
Found at i:64493872 original size:12 final size:12
Alignment explanation
Indices: 64493855--64493894 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
64493845 AGCAGAGGCC
64493855 GCAGCGAGAGAA
1 GCAGCGAGAGAA
64493867 GCAGCGAGAGAA
1 GCAGCGAGAGAA
* *
64493879 GCAGCAATAGAA
1 GCAGCGAGAGAA
64493891 GCAG
1 GCAG
64493895 AGGTTCAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.42, C:0.17, G:0.38, T:0.03
Consensus pattern (12 bp):
GCAGCGAGAGAA
Found at i:64494459 original size:42 final size:42
Alignment explanation
Indices: 64494312--64494703 Score: 410
Period size: 42 Copynumber: 9.4 Consensus size: 42
64494302 GTTTGTGAAA
* ***
64494312 TAAGCGCCGCTAAAGAACACT-A-CTTTTAGCGGCATTTTTGAA
1 TAAGCGCCGCTAAAGAACA-TGATC-TTTAGCGGCGTTTTTTTC
* * * *
64494354 TAAGCGCCGCTATAGAACATTA-CTTTTAGAGGCGTTTTCTTCC
1 TAAGCGCCGCTAAAGAACATGATC-TTTAGCGGCGTTTT-TTTC
* * *
64494397 AAAGTGCCGCTAAAGAACATGATCTTTAGCGGCGTTTGTTTC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTC
* *
64494439 TAAGCGCCGCTAAAGAACATGATCTTTAGGGGTGTTTTTTTTTC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCG--TTTTTTTC
** *
64494483 TAAGCGCCGCT------C-TTTTCTTTAGCGGTGTTTTTTTTTC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCG--TTTTTTTC
*
64494520 TAAGCGCCGCTAAAGAGCATGATCTTTAGCGGCGTTTTTTTC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTC
*
64494562 TAAGCGCCGCTAAAGAACATGATCTTTAGGGGCGTTTTTATTC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTT-TTC
* *
64494605 TAAGCGACGCTAAAGAGCATGATCTTTAGCGGCG-TTTTTTC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTC
* *
64494646 TAAGCACCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTATG
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTT-TC
*
64494689 TAAGCGCCGCAAAAG
1 TAAGCGCCGCTAAAG
64494704 TTAGCGACGT
Statistics
Matches: 300, Mismatches: 35, Indels: 29
0.82 0.10 0.08
Matches are distributed among these distances:
37 33 0.11
38 1 0.00
41 35 0.12
42 120 0.40
43 80 0.27
44 31 0.10
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (42 bp):
TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTC
Found at i:64494535 original size:81 final size:77
Alignment explanation
Indices: 64494419--64494656 Score: 253
Period size: 81 Copynumber: 2.9 Consensus size: 77
64494409 AAGAACATGA
* *
64494419 TCTTTAGCGGCGTTTGTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGGGGTGTTTTTTTTTCT
1 TCTTTAGCGGCGTTTGTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCG--TTTTTTTCT
64494484 AAGCGCCGCTCTTT
64 AAGCGCCGCTCTTT
* * *
64494498 TCTTTAGCGGTGTTTTTTTTTCTAAGCGCCGCTAAAGAGCATGATCTTTAGCGGCGTTTTTTTCT
1 TCTTTAGCGGCG--TTTGTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
**
64494563 AAGCGCCGCTAAAGAACATGA
64 AAGCGCCGCT------C-TTT
* * * *
64494584 TCTTTAGGGGCGTTTTTATTCTAAGCGACGCTAAAGAGCATGATCTTTAGCGGCG-TTTTTTCTA
1 TCTTTAGCGGCGTTTGT-TTCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTA
*
64494648 AGCACCGCT
65 AGCGCCGCT
64494657 AAAGAACATG
Statistics
Matches: 138, Mismatches: 11, Indels: 15
0.84 0.07 0.09
Matches are distributed among these distances:
79 30 0.22
81 38 0.28
84 22 0.16
85 37 0.27
86 11 0.08
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (77 bp):
TCTTTAGCGGCGTTTGTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAA
GCGCCGCTCTTT
Found at i:64494562 original size:123 final size:121
Alignment explanation
Indices: 64494378--64494703 Score: 404
Period size: 123 Copynumber: 2.6 Consensus size: 121
64494368 GAACATTACT
* * * *
64494378 TTTAGAGGCGTTTTCTTCCAAAGTGCCGCTAAAGAACATGATCTTTAGCGGCGTTTGTTTCTAAG
1 TTTAGCGGCGTTTT-TT-CTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
* * * **
64494443 CGCCGCTAAAGAACATGATCTTTAGGGGTGTTTTTTTTTCTAAGCGCCGCT-C-TTTTC
64 CGCCGCTAAAGAACATGATCTTTAGGGGCG-TTTTTATTCTAAGCGACGCTACATGATC
* *
64494500 TTTAGCGGTGTTTTTTTTTCTAAGCGCCGCTAAAGAGCATGATCTTTAGCGGCGTTTTTTTCTAA
1 TTTAGCGGCG---TTTTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAA
64494565 GCGCCGCTAAAGAACATGATCTTTAGGGGCGTTTTTATTCTAAGCGACGCTAAAGAGCATGATC
63 GCGCCGCTAAAGAACATGATCTTTAGGGGCGTTTTTATTCTAAGCGACGCT----A-CATGATC
* *
64494629 TTTAGCGGCGTTTTTTCTAAGCACCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTATGTAAGC
1 TTTAGCGGCGTTTTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTT-TCTAAGC
*
64494694 GCCGCAAAAG
65 GCCGCTAAAG
64494704 TTAGCGACGT
Statistics
Matches: 177, Mismatches: 16, Indels: 17
0.84 0.08 0.08
Matches are distributed among these distances:
122 26 0.15
123 72 0.41
124 2 0.01
125 4 0.02
126 45 0.25
127 15 0.08
128 1 0.01
129 12 0.07
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.35
Consensus pattern (121 bp):
TTTAGCGGCGTTTTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAGCG
CCGCTAAAGAACATGATCTTTAGGGGCGTTTTTATTCTAAGCGACGCTACATGATC
Found at i:64494806 original size:22 final size:22
Alignment explanation
Indices: 64494775--64494817 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
64494765 TAGTGGCGTT
* *
64494775 AAAAAGCGCCGCTAAAGACCTA
1 AAAAAACGCCGCTAAAAACCTA
64494797 AAAAAACGCCGCTAAAAACCT
1 AAAAAACGCCGCTAAAAACCT
64494818 GTTCTGCTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.49, C:0.28, G:0.14, T:0.09
Consensus pattern (22 bp):
AAAAAACGCCGCTAAAAACCTA
Found at i:64533957 original size:30 final size:31
Alignment explanation
Indices: 64533923--64534022 Score: 107
Period size: 30 Copynumber: 3.2 Consensus size: 31
64533913 ATTTTTACAG
*
64533923 ATCTTTTAAAAATATCTA-AATATATTATAT
1 ATCTTTTAAAAATATTTAGAATATATTATAT
*
64533953 ATCTTTTAAGCATATATTTAAGAATATATTATAT
1 ATCTTTTAA--AAATATTT-AGAATATATTATAT
* *
64533987 AT-TTTT-CAGATATTTAGGAATATATTATAT
1 ATCTTTTAAAAATATTTA-GAATATATTATAT
64534017 ATCTTT
1 ATCTTT
64534023 CTTATTTCTG
Statistics
Matches: 60, Mismatches: 4, Indels: 11
0.80 0.05 0.15
Matches are distributed among these distances:
29 1 0.02
30 31 0.52
31 3 0.05
32 6 0.10
33 5 0.08
34 14 0.23
ACGTcount: A:0.40, C:0.06, G:0.05, T:0.49
Consensus pattern (31 bp):
ATCTTTTAAAAATATTTAGAATATATTATAT
Found at i:64547459 original size:3 final size:3
Alignment explanation
Indices: 64547451--64547484 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
64547441 AAAGCAACTA
64547451 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
64547485 TCCCACTTGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:64549648 original size:21 final size:21
Alignment explanation
Indices: 64549623--64549663 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
64549613 AACTGTTACA
64549623 AAACAATCACTAAACTATTTG
1 AAACAATCACTAAACTATTTG
64549644 AAACAATCACTAAACTATTT
1 AAACAATCACTAAACTATTT
64549664 AAATTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.49, C:0.20, G:0.02, T:0.29
Consensus pattern (21 bp):
AAACAATCACTAAACTATTTG
Found at i:64562273 original size:7 final size:7
Alignment explanation
Indices: 64562263--64562291 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
64562253 ATTTTAGTTA
64562263 AGAATAT
1 AGAATAT
64562270 AGAATAT
1 AGAATAT
64562277 AGAATAT
1 AGAATAT
64562284 AGAATAT
1 AGAATAT
64562291 A
1 A
64562292 TGATCGAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.14, T:0.28
Consensus pattern (7 bp):
AGAATAT
Found at i:64562566 original size:13 final size:14
Alignment explanation
Indices: 64562550--64562578 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
64562540 AAATAATAAC
64562550 AAAAAATTT-AAAT
1 AAAAAATTTCAAAT
64562563 AAAAAATTTCAAAT
1 AAAAAATTTCAAAT
64562577 AA
1 AA
64562579 TATACTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (14 bp):
AAAAAATTTCAAAT
Found at i:64568688 original size:39 final size:40
Alignment explanation
Indices: 64568619--64568697 Score: 142
Period size: 39 Copynumber: 2.0 Consensus size: 40
64568609 AGCCTTTCCG
*
64568619 GGCAAGATTGGTAGTTTTTTTATATGGATTCTTGTTTGAT
1 GGCAAGATTGATAGTTTTTTTATATGGATTCTTGTTTGAT
64568659 GGCAAGATTGATAG-TTTTTTATATGGATTCTTGTTTGAT
1 GGCAAGATTGATAGTTTTTTTATATGGATTCTTGTTTGAT
64568698 AGCAGTGGTG
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
39 25 0.66
40 13 0.34
ACGTcount: A:0.22, C:0.05, G:0.24, T:0.49
Consensus pattern (40 bp):
GGCAAGATTGATAGTTTTTTTATATGGATTCTTGTTTGAT
Found at i:64569305 original size:27 final size:25
Alignment explanation
Indices: 64569262--64569312 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
64569252 ACTATTTTTA
*
64569262 TTTTTATTTGTAATATATATAATTT
1 TTTTTATTTGTAATATACATAATTT
*
64569287 TTTTTATTTTTATACTATACATAATT
1 TTTTTATTTGTA-A-TATACATAATT
64569313 AAATCAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 11 0.50
26 1 0.05
27 10 0.45
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (25 bp):
TTTTTATTTGTAATATACATAATTT
Found at i:64579442 original size:30 final size:30
Alignment explanation
Indices: 64579408--64579467 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
64579398 GCCAAGTTGC
64579408 CTGGTAGACCAATTCTTTTGCATCAATAGA
1 CTGGTAGACCAATTCTTTTGCATCAATAGA
64579438 CTGGTAGACCAATTCTTTTGCATCAATAGA
1 CTGGTAGACCAATTCTTTTGCATCAATAGA
64579468 TGAGTAATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (30 bp):
CTGGTAGACCAATTCTTTTGCATCAATAGA
Found at i:64582713 original size:24 final size:22
Alignment explanation
Indices: 64582661--64582715 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 22
64582651 GCATGACTAT
64582661 TAAAAAAT-TTAATAAATAAAA
1 TAAAAAATATTAATAAATAAAA
*
64582682 -AAATAATATTAATAATATTAAAA
1 TAAAAAATATTAATAA-A-TAAAA
64582705 TAAAAAATATT
1 TAAAAAATATT
64582716 TTAAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
20 6 0.21
21 7 0.25
22 1 0.04
23 5 0.18
24 9 0.32
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAAAATATTAATAAATAAAA
Found at i:64604201 original size:5 final size:5
Alignment explanation
Indices: 64604191--64604229 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
64604181 GCCTAAGATG
* *
64604191 TGAAT TGAAT TGAAT TGAAT ATGAAT TGTAT TAAAT TGA
1 TGAAT TGAAT TGAAT TGAAT -TGAAT TGAAT TGAAT TGA
64604230 GCTAAATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (5 bp):
TGAAT
Found at i:64604745 original size:24 final size:24
Alignment explanation
Indices: 64604712--64604768 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
64604702 ATGGCTCTTG
*
64604712 GAGCTACCCG-TCATTGGCTCGCAT
1 GAGCTTCCCGATCA-TGGCTCGCAT
* **
64604736 GAGCTTCCCGATTATGGCTCTTAT
1 GAGCTTCCCGATCATGGCTCGCAT
64604760 GAGCTTCCC
1 GAGCTTCCC
64604769 ATTATATAGC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 26 0.93
25 2 0.07
ACGTcount: A:0.16, C:0.32, G:0.23, T:0.30
Consensus pattern (24 bp):
GAGCTTCCCGATCATGGCTCGCAT
Found at i:64619245 original size:20 final size:22
Alignment explanation
Indices: 64619215--64619258 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
64619205 AGAAAAAGAG
64619215 AAATACAAAAA-AGAATAG-ATC
1 AAATACAAAAAGA-AATAGAATC
64619236 AAAT-CAAAAAGAAATAGAATC
1 AAATACAAAAAGAAATAGAATC
64619257 AA
1 AA
64619259 CAATTTGCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.68, C:0.09, G:0.09, T:0.14
Consensus pattern (22 bp):
AAATACAAAAAGAAATAGAATC
Found at i:64622102 original size:32 final size:32
Alignment explanation
Indices: 64622061--64622248 Score: 216
Period size: 32 Copynumber: 6.1 Consensus size: 32
64622051 AAATAATACA
64622061 TGAACAGGAGAGATTCCCTGCAAGAAATAATG
1 TGAACAGGAGAGATTCCCTGCAAGAAATAATG
*
64622093 TGAACAGGAGAGATTCCCTGCAACAAAATAATG
1 TGAACAGGAGAGATTCCCTGCAA-GAAATAATG
* *
64622126 TGAATAGGA-AGATTCCCTGCAAG-AATGA--
1 TGAACAGGAGAGATTCCCTGCAAGAAATAATG
* *
64622154 TGAACA-GAAAG-TT-CCTGCAACAAATAATTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATAA-TG
*
64622184 TGAACA-G-GAGATTCCCTGCAACAAATAATGG
1 TGAACAGGAGAGATTCCCTGCAAGAAATAAT-G
*
64622215 TGAACAGG-GAGATTCCCTGCAAGAAATGATG
1 TGAACAGGAGAGATTCCCTGCAAGAAATAATG
64622246 TGA
1 TGA
64622249 CANNNNNNNN
Statistics
Matches: 136, Mismatches: 10, Indels: 21
0.81 0.06 0.13
Matches are distributed among these distances:
26 7 0.05
27 8 0.06
28 7 0.05
29 2 0.01
30 14 0.10
31 25 0.18
32 57 0.42
33 16 0.12
ACGTcount: A:0.40, C:0.16, G:0.23, T:0.20
Consensus pattern (32 bp):
TGAACAGGAGAGATTCCCTGCAAGAAATAATG
Found at i:64622186 original size:58 final size:63
Alignment explanation
Indices: 64622061--64622236 Score: 206
Period size: 58 Copynumber: 2.8 Consensus size: 63
64622051 AAATAATACA
*
64622061 TGAACAGGAGAGATTCCCTGCAAGAAATAATGTGAACAGGAGAGATTCCCTGCAACAAAATAATG
1 TGAACAGGA-AGATTCCCTGCAAGAAATAA-GTGAACAGGAAAGATTCCCTGCAACAAAATAATG
* *
64622126 TGAATAGGAAGATTCCCTGCAAG-AATGA-TGAACA-GAAAG-TT-CCTGCAAC-AAATAATTG
1 TGAACAGGAAGATTCCCTGCAAGAAATAAGTGAACAGGAAAGATTCCCTGCAACAAAATAA-TG
* *
64622184 TGAACAGG-AGATTCCCTGCAACAAATAATGGTGAACAGG-GAGATTCCCTGCAA
1 TGAACAGGAAGATTCCCTGCAAGAAATAA--GTGAACAGGAAAGATTCCCTGCAA
64622237 GAAATGATGT
Statistics
Matches: 96, Mismatches: 7, Indels: 18
0.79 0.06 0.15
Matches are distributed among these distances:
57 19 0.20
58 21 0.22
59 2 0.02
60 4 0.04
61 14 0.15
62 3 0.03
63 11 0.11
64 14 0.15
65 8 0.08
ACGTcount: A:0.40, C:0.18, G:0.23, T:0.20
Consensus pattern (63 bp):
TGAACAGGAAGATTCCCTGCAAGAAATAAGTGAACAGGAAAGATTCCCTGCAACAAAATAATG
Found at i:64622218 original size:89 final size:91
Alignment explanation
Indices: 64622077--64622245 Score: 265
Period size: 89 Copynumber: 1.9 Consensus size: 91
64622067 GGAGAGATTC
* *
64622077 CCTGCAAGAAATAATGTGAACAGGAGAGATTCCCTGCAACAAAATAATGTGAATAGGAAGATTCC
1 CCTGCAACAAATAATGTGAACAGGAGAGATTCCCTGCAACAAAATAATGTGAACAGGAAGATTCC
64622142 CTGCAAG-AATGATGAACAGAAAGTT
66 CTGCAAGAAATGATGAACAGAAAGTT
*
64622167 CCTGCAACAAATAATTGTGAACA-G-GAGATTCCCTGCAAC-AAATAATGGTGAACAGGGAGATT
1 CCTGCAACAAATAA-TGTGAACAGGAGAGATTCCCTGCAACAAAATAAT-GTGAACAGGAAGATT
64622229 CCCTGCAAGAAATGATG
64 CCCTGCAAGAAATGATG
64622246 TGACANNNNN
Statistics
Matches: 73, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
88 7 0.10
89 37 0.51
90 21 0.29
91 8 0.11
ACGTcount: A:0.40, C:0.17, G:0.22, T:0.20
Consensus pattern (91 bp):
CCTGCAACAAATAATGTGAACAGGAGAGATTCCCTGCAACAAAATAATGTGAACAGGAAGATTCC
CTGCAAGAAATGATGAACAGAAAGTT
Found at i:64636592 original size:26 final size:26
Alignment explanation
Indices: 64636562--64636613 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
64636552 CCAATGAATC
64636562 GGGGAATCAGCACACAGCAACCCCTT
1 GGGGAATCAGCACACAGCAACCCCTT
**
64636588 GGGGAATCAGCACTTAGCAACCCCTT
1 GGGGAATCAGCACACAGCAACCCCTT
64636614 CACATTTCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.33, G:0.23, T:0.15
Consensus pattern (26 bp):
GGGGAATCAGCACACAGCAACCCCTT
Found at i:64636795 original size:101 final size:103
Alignment explanation
Indices: 64636529--64636874 Score: 492
Period size: 102 Copynumber: 3.4 Consensus size: 103
64636519 AACCGTTGTT
* * * ** *
64636529 GGTGGATTCCGCACTTAGC-ACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT-TGGGG
1 GGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACTTAGCAACCCCTCGGGGG
* * *
64636592 AATCAGCACTTAGCAA-CCCC-TTCACATTTCAGATGC
66 AATCAGCACTTAGCAACCCCCTTTCACATTTAAAATAC
** *
64636628 GGTGGAATCAGCACTTAGCAACCACCAAATGGGT-CGGGAATCAGCACTTAGCAACCCCTCGGGG
1 GGTGGAATCAGCACTTAGCAACCACC-AATGAATAGGGGAATCAGCACTTAGCAACCCCTCGGGG
64636692 GAATCAG-ACTTAGCAACCCCCTTTCACATTTAAAATAC
65 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATAC
*
64636730 GGTGGAATCAGCACTTAGCAACCACCAAT-AGGTAGGGGAATCA-CACTTAGCAACCCCTCGGGG
1 GGTGGAATCAGCACTTAGCAACCACCAATGA-ATAGGGGAATCAGCACTTAGCAACCCCTCGGGG
*
64636793 GAATCAGCACTTAGCAACCCCCTTCCACATTTAAAATAC
65 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATAC
64636832 GGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCA
1 GGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCA
64636875 ACCACAGCAA
Statistics
Matches: 223, Mismatches: 15, Indels: 15
0.88 0.06 0.06
Matches are distributed among these distances:
99 17 0.08
100 37 0.17
101 51 0.23
102 117 0.52
103 1 0.00
ACGTcount: A:0.32, C:0.29, G:0.21, T:0.19
Consensus pattern (103 bp):
GGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACTTAGCAACCCCCTTTCACATTTAAAATAC
Found at i:64638711 original size:24 final size:23
Alignment explanation
Indices: 64638677--64638760 Score: 80
Period size: 24 Copynumber: 3.5 Consensus size: 23
64638667 TCCGGGCTAT
64638677 ATAATGGGAAGCTCATAAGAGCC
1 ATAATGGGAAGCTCATAAGAGCC
**
64638700 ATAATCGGGAAGCTCATGCGAGCC
1 ATAAT-GGGAAGCTCATAAGAGCC
* * *
64638724 AATGACGGGTAGCTCCA-AAGAGCC
1 -ATAATGGGAAGCT-CATAAGAGCC
64638748 ATTAATGGGAAGC
1 A-TAATGGGAAGC
64638761 CCCGGATAGC
Statistics
Matches: 47, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
23 6 0.13
24 36 0.77
25 5 0.11
ACGTcount: A:0.35, C:0.20, G:0.29, T:0.17
Consensus pattern (23 bp):
ATAATGGGAAGCTCATAAGAGCC
Found at i:64639335 original size:5 final size:5
Alignment explanation
Indices: 64639306--64639344 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
64639296 TAAATTTAGC
* *
64639306 TCAAT TTAAT ACAAT TCATAT TCAAT TCAAT TCAAT TCA
1 TCAAT TCAAT TCAAT TCA-AT TCAAT TCAAT TCAAT TCA
64639345 CATCTTAGGC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (5 bp):
TCAAT
Found at i:64667383 original size:26 final size:26
Alignment explanation
Indices: 64667353--64667402 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
64667343 CCAATGAATC
64667353 GGGGAATCAGCACACAGCAACCCCTT
1 GGGGAATCAGCACACAGCAACCCCTT
**
64667379 GGGGAATCAGCACTTAGCAACCCC
1 GGGGAATCAGCACACAGCAACCCC
64667403 CTTCACATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.34, G:0.24, T:0.12
Consensus pattern (26 bp):
GGGGAATCAGCACACAGCAACCCCTT
Found at i:64667482 original size:26 final size:26
Alignment explanation
Indices: 64667453--64667504 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
64667443 ACCAAATGGG
64667453 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACTTAGCAACCCC
64667479 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACTTAGCAACCCC
64667505 CTTTCACATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.35, G:0.23, T:0.15
Consensus pattern (26 bp):
TCGGGGAATCAGCACTTAGCAACCCC
Found at i:64667561 original size:102 final size:102
Alignment explanation
Indices: 64667320--64667683 Score: 527
Period size: 102 Copynumber: 3.6 Consensus size: 102
64667310 AACCGTTGTT
* * * *
64667320 GGTGGATTCCGCACTTAGC-ACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGGA
1 GGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGGGA
* * *
64667384 ATCAGCACTTAGCAACCCCC-TTCACATTTCAGATGC
66 ATCAGCACTTAGCAACCCCCTTTCACATTTAAAATAC
* ** * **
64667420 GATGGAATCAGCACTTAGCAACCACCAAATGGGTCGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 GGTGGAATCAGCACTTAGCAACCACC-AATGAATAGGGGAATCAGCACACAGCAACCCCTCGGGG
64667485 AATCAGCACTTAGCAACCCCCTTTCACATTTAAAATAC
65 AATCAGCACTTAGCAACCCCCTTTCACATTTAAAATAC
* * **
64667523 GGTGGAATCAGCACTTAGCAACCACCAAT-AGGTAGGGGAATCAACACTTAGCAACCCCTCGGGG
1 GGTGGAATCAGCACTTAGCAACCACCAATGA-ATAGGGGAATCAGCACACAGCAACCCCTCGGGG
*
64667587 AATCAGCACTTAGCAACCCCCTTCCACATTTAAAATAC
65 AATCAGCACTTAGCAACCCCCTTTCACATTTAAAATAC
64667625 GGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCT
1 GGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCT
64667684 TTATATGCAA
Statistics
Matches: 239, Mismatches: 20, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
100 16 0.07
101 6 0.03
102 178 0.74
103 39 0.16
ACGTcount: A:0.32, C:0.30, G:0.20, T:0.18
Consensus pattern (102 bp):
GGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACACAGCAACCCCTCGGGGA
ATCAGCACTTAGCAACCCCCTTTCACATTTAAAATAC
Found at i:64667586 original size:26 final size:26
Alignment explanation
Indices: 64667557--64667606 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
64667547 CCAATAGGTA
64667557 GGGGAATCAACACTTAGCAACCCCTC
1 GGGGAATCAACACTTAGCAACCCCTC
*
64667583 GGGGAATCAGCACTTAGCAACCCC
1 GGGGAATCAACACTTAGCAACCCC
64667607 CTTCCACATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.34, G:0.22, T:0.14
Consensus pattern (26 bp):
GGGGAATCAACACTTAGCAACCCCTC
Found at i:64668048 original size:31 final size:30
Alignment explanation
Indices: 64668017--64668074 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
64668007 CCATCCAACT
64668017 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
64668047 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
64668075 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:64670822 original size:38 final size:38
Alignment explanation
Indices: 64670771--64670847 Score: 138
Period size: 38 Copynumber: 2.0 Consensus size: 38
64670761 CTAATTGAAG
64670771 AATAAATGACAGAGTCTTTGAGGGAGCGG-ATTTGGTAT
1 AATAAATGACAGAGTCTTTGAGGGAG-GGAATTTGGTAT
64670809 AATAAATGACAGAGTCTTTGAGGGAGGGAATTTGGTAT
1 AATAAATGACAGAGTCTTTGAGGGAGGGAATTTGGTAT
64670847 A
1 A
64670848 TCTCAAACTT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
37 2 0.05
38 36 0.95
ACGTcount: A:0.34, C:0.06, G:0.31, T:0.29
Consensus pattern (38 bp):
AATAAATGACAGAGTCTTTGAGGGAGGGAATTTGGTAT
Found at i:64702153 original size:19 final size:18
Alignment explanation
Indices: 64702100--64702153 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 18
64702090 AATAGAAGTT
*
64702100 TTAAAAATTATTTAACAA
1 TTAAAAATTATTTAATAA
* *
64702118 TTACAAAATTAATTAATGA
1 TTA-AAAATTATTTAATAA
64702137 TTAAAAATTATTATAAT
1 TTAAAAATTATT-TAAT
64702154 TATATTTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
18 11 0.37
19 19 0.63
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.41
Consensus pattern (18 bp):
TTAAAAATTATTTAATAA
Found at i:64703665 original size:33 final size:34
Alignment explanation
Indices: 64703604--64703670 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 34
64703594 TAAAATTTAA
* *
64703604 ATATTTTTAACTTATATTAATAATAAATAATAAT
1 ATATATTTAAATTATATTAATAATAAATAATAAT
* *
64703638 ATATATTTAAATTAT-TTTATATTAAATAATAAT
1 ATATATTTAAATTATATTAATAATAAATAATAAT
64703671 TAAACTTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 16 0.55
34 13 0.45
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (34 bp):
ATATATTTAAATTATATTAATAATAAATAATAAT
Found at i:64704314 original size:15 final size:15
Alignment explanation
Indices: 64704291--64704320 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
64704281 GGCTGTGTTT
64704291 TTGTCTGCAAGAAAA
1 TTGTCTGCAAGAAAA
*
64704306 TTGTTTGCAAGAAAA
1 TTGTCTGCAAGAAAA
64704321 CTGGATAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30
Consensus pattern (15 bp):
TTGTCTGCAAGAAAA
Found at i:64705852 original size:23 final size:23
Alignment explanation
Indices: 64705808--64705853 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
64705798 TATATACCAT
**
64705808 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTACGAGTATA
* *
64705831 TATTTTTATTATGTACGCGTATA
1 TATTATTATTATGTACGAGTATA
64705854 CCTATATATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.04, G:0.11, T:0.54
Consensus pattern (23 bp):
TATTATTATTATGTACGAGTATA
Found at i:64706120 original size:19 final size:19
Alignment explanation
Indices: 64706085--64706121 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
64706075 ATATATTACC
**
64706085 TAAATATTTTAGTATTATG
1 TAAATATTTTAACATTATG
64706104 TAAATATTTTAACATTAT
1 TAAATATTTTAACATTAT
64706122 ATTATATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (19 bp):
TAAATATTTTAACATTATG
Found at i:64712238 original size:12 final size:12
Alignment explanation
Indices: 64712221--64712245 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
64712211 GGTGTTCATT
64712221 CGGTTAACCGAC
1 CGGTTAACCGAC
64712233 CGGTTAACCGAC
1 CGGTTAACCGAC
64712245 C
1 C
64712246 CGAAATTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:64712612 original size:13 final size:13
Alignment explanation
Indices: 64712594--64712623 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
64712584 TTTTAGTTTT
*
64712594 ATTGGGTTGGGTA
1 ATTGGGTTAGGTA
64712607 ATTGGGTTAGGTA
1 ATTGGGTTAGGTA
64712620 ATTG
1 ATTG
64712624 AGTTTGGGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (13 bp):
ATTGGGTTAGGTA
Found at i:64715559 original size:27 final size:27
Alignment explanation
Indices: 64715528--64715584 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
64715518 CATATATTGT
64715528 TGGCATTAGCGGTAAGAATATTCAAAC
1 TGGCATTAGCGGTAAGAATATTCAAAC
*
64715555 TGGCATTATCGGTAAGAATATTCAAAC
1 TGGCATTAGCGGTAAGAATATTCAAAC
64715582 TGG
1 TGG
64715585 AATATATCTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (27 bp):
TGGCATTAGCGGTAAGAATATTCAAAC
Found at i:64723494 original size:26 final size:26
Alignment explanation
Indices: 64723464--64723514 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
64723454 GCTTAGTAAG
*
64723464 TTCGTATAATGGGAAATTAACTTACT
1 TTCGTATAACGGGAAATTAACTTACT
64723490 TTCGTATAACGGGAAATTAACTTAC
1 TTCGTATAACGGGAAATTAACTTAC
64723515 CATTCATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (26 bp):
TTCGTATAACGGGAAATTAACTTACT
Found at i:64723909 original size:25 final size:25
Alignment explanation
Indices: 64723881--64723961 Score: 94
Period size: 25 Copynumber: 3.2 Consensus size: 25
64723871 AACATGTAAG
64723881 CGGGAAGCTCTTTCGAGCCATATAA
1 CGGGAAGCTCTTTCGAGCCATATAA
*
64723906 CGGGAAGCT-TATGT-GAGCCATGTAA
1 CGGGAAGCTCT-T-TCGAGCCATATAA
* * *
64723931 TGGGAAGCTCATTCGAGCTATATAA
1 CGGGAAGCTCTTTCGAGCCATATAA
64723956 CGGGAA
1 CGGGAA
64723962 ATTCAAGCGA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
24 2 0.04
25 43 0.93
26 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (25 bp):
CGGGAAGCTCTTTCGAGCCATATAA
Found at i:64723974 original size:50 final size:51
Alignment explanation
Indices: 64723873--64723975 Score: 129
Period size: 50 Copynumber: 2.0 Consensus size: 51
64723863 CTCATGCAAA
* * * *
64723873 CATGTAAGCGGGAAGCTCTTTCGAGCCATATAACGGGAAGCTTATGTGAGC
1 CATGTAAGCGGGAAGCTCATTCGAGCCATATAACGGGAAGATTAAGCGAGC
* *
64723924 CATGTAA-TGGGAAGCTCATTCGAGCTATATAACGGGAA-ATTCAAGCGAGC
1 CATGTAAGCGGGAAGCTCATTCGAGCCATATAACGGGAAGATT-AAGCGAGC
64723974 CA
1 CA
64723976 ATATTGGGAA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
49 2 0.04
50 36 0.80
51 7 0.16
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.22
Consensus pattern (51 bp):
CATGTAAGCGGGAAGCTCATTCGAGCCATATAACGGGAAGATTAAGCGAGC
Found at i:64724030 original size:27 final size:25
Alignment explanation
Indices: 64723995--64724052 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 25
64723985 AGTTTTGGAA
*
64723995 AGCCATTAATCAATAAGCTCATGAAAG
1 AGCCATTAATCAAGAAGCTC-TG-AAG
* *
64724022 AGCCTTTAATCAGGAAGCTCTGAAG
1 AGCCATTAATCAAGAAGCTCTGAAG
64724047 AGCCAT
1 AGCCAT
64724053 ATATTGGGAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 8 0.30
26 2 0.07
27 17 0.63
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.22
Consensus pattern (25 bp):
AGCCATTAATCAAGAAGCTCTGAAG
Found at i:64725292 original size:9 final size:9
Alignment explanation
Indices: 64725280--64725365 Score: 102
Period size: 9 Copynumber: 9.4 Consensus size: 9
64725270 AAAATAAAAA
64725280 AATTCGGGT
1 AATTCGGGT
*
64725289 AATTCAGGTT
1 AATTC-GGGT
**
64725299 TTTTTCGG-T
1 AAT-TCGGGT
*
64725308 AATTCGGTT
1 AATTCGGGT
*
64725317 AATTCGGTT
1 AATTCGGGT
64725326 AATTCGGGT
1 AATTCGGGT
64725335 AATTCGGGT
1 AATTCGGGT
64725344 AATTCGGGT
1 AATTCGGGT
64725353 AATTCGGGT
1 AATTCGGGT
64725362 AATT
1 AATT
64725366 TTTAACCAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
8 4 0.06
9 56 0.82
10 6 0.09
11 2 0.03
ACGTcount: A:0.22, C:0.10, G:0.27, T:0.41
Consensus pattern (9 bp):
AATTCGGGT
Found at i:64741238 original size:13 final size:13
Alignment explanation
Indices: 64741219--64741280 Score: 61
Period size: 13 Copynumber: 4.8 Consensus size: 13
64741209 TAAACTAAAT
64741219 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
* * *
64741232 TTCTCAACATCAC
1 TTTTCAAAAGCAC
* *
64741245 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
**
64741258 TTTTCAAAAATAC
1 TTTTCAAAAGCAC
64741271 TTTTCAAAAG
1 TTTTCAAAAG
64741281 TAATGAAGAA
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 38 1.00
ACGTcount: A:0.35, C:0.26, G:0.05, T:0.34
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:64742318 original size:18 final size:18
Alignment explanation
Indices: 64742283--64742320 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
64742273 GAGTTGATCC
*
64742283 AAATAACTCGATTAATTT
1 AAATAACTCGACTAATTT
64742301 AAATAACTCGAACT-ATTT
1 AAATAACTCG-ACTAATTT
64742319 AA
1 AA
64742321 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 16 0.89
19 2 0.11
ACGTcount: A:0.47, C:0.13, G:0.05, T:0.34
Consensus pattern (18 bp):
AAATAACTCGACTAATTT
Found at i:64750948 original size:15 final size:15
Alignment explanation
Indices: 64750924--64750953 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
64750914 TTTTAAAGCT
*
64750924 ATTTTGAAATTGAAA
1 ATTTTAAAATTGAAA
64750939 ATTTTAAAATTGAAA
1 ATTTTAAAATTGAAA
64750954 CCCTCCATTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATTTTAAAATTGAAA
Found at i:64750982 original size:15 final size:15
Alignment explanation
Indices: 64750962--64750992 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
64750952 AACCCTCCAT
*
64750962 TGAACACTTTTAAAC
1 TGAACACGTTTAAAC
64750977 TGAACACGTTTAAAC
1 TGAACACGTTTAAAC
64750992 T
1 T
64750993 AGAGGTGATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (15 bp):
TGAACACGTTTAAAC
Found at i:64751575 original size:15 final size:15
Alignment explanation
Indices: 64751555--64751583 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
64751545 AAATAAGTCT
64751555 AATTTATTAAAAAGA
1 AATTTATTAAAAAGA
64751570 AATTTATTAAAAAG
1 AATTTATTAAAAAG
64751584 TTAGAAGCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (15 bp):
AATTTATTAAAAAGA
Found at i:64761818 original size:91 final size:91
Alignment explanation
Indices: 64761635--64761847 Score: 227
Period size: 91 Copynumber: 2.4 Consensus size: 91
64761625 GGAAAATTAC
* ** *
64761635 AAAAATTATTATTTATTATATTGTATTTTTGGGCACTTAGTCTTGAGTATAGTGTTGCAAAAATA
1 AAAAATTATTATTTATTATATTTTATTTTTGGAAACTTAGTCTTGAGTATAGTGCTGCAAAAATA
*
64761700 TTTTTTTTATTTTCTGAAATAATTAT
66 TTTTTTTTATTTTCTGAAATAACTAT
* * * *
64761726 AAAAATTATTATTTATTCTATTTTATTTTTGGAAATTTGAGT-TTGAGTATAGTGCTG-TAAATT
1 AAAAATTATTATTTATTATATTTTATTTTTGGAAACTT-AGTCTTGAGTATAGTGCTGCAAAAAT
* **
64761789 TTTTTATTTTATTTT-TAGGGATAACTAT
65 ATTTT-TTTTATTTTCT-GAAATAACTAT
* * * *
64761817 AAAAA-CATTATTTTTTATACTTCATTTTTGG
1 AAAAATTATTATTTATTATATTTTATTTTTGG
64761848 GGCAATTTGG
Statistics
Matches: 102, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
90 30 0.29
91 69 0.68
92 3 0.03
ACGTcount: A:0.31, C:0.05, G:0.12, T:0.52
Consensus pattern (91 bp):
AAAAATTATTATTTATTATATTTTATTTTTGGAAACTTAGTCTTGAGTATAGTGCTGCAAAAATA
TTTTTTTTATTTTCTGAAATAACTAT
Found at i:64762343 original size:31 final size:31
Alignment explanation
Indices: 64762282--64762343 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
64762272 TGTCGTTGGA
** *
64762282 AAGCTTTTAAGGTACTTTGTTTGTTGATTTT
1 AAGCTTTTAAGGTACGGTGTTGGTTGATTTT
64762313 AAGCTTTTAAGGTATCGGTGTTGGTT-ATTTT
1 AAGCTTTTAAGGTA-CGGTGTTGGTTGATTTT
64762344 GTCGATGGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 19 0.70
32 8 0.30
ACGTcount: A:0.19, C:0.06, G:0.23, T:0.52
Consensus pattern (31 bp):
AAGCTTTTAAGGTACGGTGTTGGTTGATTTT
Found at i:64763340 original size:78 final size:78
Alignment explanation
Indices: 64763211--64763357 Score: 240
Period size: 78 Copynumber: 1.9 Consensus size: 78
64763201 CTCATATTCT
* * *
64763211 ACCATTAAACCATGATCCCTTGATCTCACCGGCTGGGAGAGTCGGTGATCATGTTGATAACGATC
1 ACCATTAAACCATGACCCCTTGATCTCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGATC
64763276 ACCACGGAGTTCG
66 ACCACGGAGTTCG
* * *
64763289 ACCATTAAACCATGACCCCTTGATCTCATCAGCTAGGAGAGTTGGTGATCATGTTGATAGCGATC
1 ACCATTAAACCATGACCCCTTGATCTCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGATC
64763354 ACCA
66 ACCA
64763358 TGGACTTTGT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
78 63 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (78 bp):
ACCATTAAACCATGACCCCTTGATCTCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGATC
ACCACGGAGTTCG
Found at i:64772782 original size:76 final size:76
Alignment explanation
Indices: 64772656--64772812 Score: 314
Period size: 76 Copynumber: 2.1 Consensus size: 76
64772646 ATAAACTTCC
64772656 CTTTGCCTGTGGTGGCCATATTTTCAGCACTATTGAATTTAGTCATTTGGTCTATGTCTGGATCT
1 CTTTGCCTGTGGTGGCCATATTTTCAGCACTATTGAATTTAGTCATTTGGTCTATGTCTGGATCT
64772721 TTAGGCACTAG
66 TTAGGCACTAG
64772732 CTTTGCCTGTGGTGGCCATATTTTCAGCACTATTGAATTTAGTCATTTGGTCTATGTCTGGATCT
1 CTTTGCCTGTGGTGGCCATATTTTCAGCACTATTGAATTTAGTCATTTGGTCTATGTCTGGATCT
64772797 TTAGGCACTAG
66 TTAGGCACTAG
64772808 CTTTG
1 CTTTG
64772813 AAGCCAAACT
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 81 1.00
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.41
Consensus pattern (76 bp):
CTTTGCCTGTGGTGGCCATATTTTCAGCACTATTGAATTTAGTCATTTGGTCTATGTCTGGATCT
TTAGGCACTAG
Found at i:64774511 original size:31 final size:31
Alignment explanation
Indices: 64774469--64774534 Score: 114
Period size: 31 Copynumber: 2.1 Consensus size: 31
64774459 CTTTTCCAAC
64774469 TTTCATCAGTAGAGGAGAGCACCTATACAAG
1 TTTCATCAGTAGAGGAGAGCACCTATACAAG
* *
64774500 TTTCATTAGTAGTGGAGAGCACCTATACAAG
1 TTTCATCAGTAGAGGAGAGCACCTATACAAG
64774531 TTTC
1 TTTC
64774535 TTTCTTTCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (31 bp):
TTTCATCAGTAGAGGAGAGCACCTATACAAG
Found at i:64783544 original size:22 final size:21
Alignment explanation
Indices: 64783517--64783661 Score: 179
Period size: 22 Copynumber: 6.9 Consensus size: 21
64783507 GATTATTGAC
* *
64783517 CCCGGTTCAGTTTTTTGTGGAA
1 CCCGGTTCGGTTTTTAG-GGAA
*
64783539 CCCGGTTCGGCTTTTAAGGGAA
1 CCCGGTTCGG-TTTTTAGGGAA
*
64783561 CCCGGTTCGGCTTTTAAGGGAA
1 CCCGGTTCGG-TTTTTAGGGAA
*
64783583 CCCGGTTCGGTTTTTTGGGAA
1 CCCGGTTCGGTTTTTAGGGAA
*
64783604 CCCAGTTCGGTTTTTAAGGGAA
1 CCCGGTTCGGTTTTT-AGGGAA
64783626 CCCGGTTCGGTTTTT--GGAA
1 CCCGGTTCGGTTTTTAGGGAA
64783645 CCC-GTTCGGTTTTTAGG
1 CCCGGTTCGGTTTTTAGG
64783662 TTTGGGTTTA
Statistics
Matches: 111, Mismatches: 8, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
18 11 0.10
19 7 0.06
20 1 0.01
21 23 0.21
22 64 0.58
23 5 0.05
ACGTcount: A:0.14, C:0.21, G:0.30, T:0.34
Consensus pattern (21 bp):
CCCGGTTCGGTTTTTAGGGAA
Found at i:64783612 original size:65 final size:63
Alignment explanation
Indices: 64783517--64783658 Score: 207
Period size: 65 Copynumber: 2.2 Consensus size: 63
64783507 GATTATTGAC
* *
64783517 CCCGGTTCAGTTTTTTGTGGAACCCGGTTCGGCTTTTAAGGGAACCCGGTTCGGCTTTTAAGGGA
1 CCCGGTTCGGTTTTTTGTGGAACCCAGTTCGGCTTTTAAGGGAACCCGGTTCGG-TTTT--GGGA
64783582 A
63 A
* *
64783583 CCCGGTTCGGTTTTTTG-GGAACCCAGTTCGGTTTTTAAGGGAACCCGGTTCGGTTTTTGGAA
1 CCCGGTTCGGTTTTTTGTGGAACCCAGTTCGGCTTTTAAGGGAACCCGGTTCGGTTTTGGGAA
64783645 CCC-GTTCGGTTTTT
1 CCCGGTTCGGTTTTT
64783659 AGGTTTGGGT
Statistics
Matches: 72, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
61 11 0.15
62 7 0.10
64 4 0.06
65 34 0.47
66 16 0.22
ACGTcount: A:0.14, C:0.21, G:0.30, T:0.35
Consensus pattern (63 bp):
CCCGGTTCGGTTTTTTGTGGAACCCAGTTCGGCTTTTAAGGGAACCCGGTTCGGTTTTGGGAA
Found at i:64783613 original size:43 final size:42
Alignment explanation
Indices: 64783535--64783659 Score: 182
Period size: 43 Copynumber: 3.0 Consensus size: 42
64783525 AGTTTTTTGT
** *
64783535 GGAACCCGGTTCGGCTTTTAAGGGAACCCGGTTCGGCTTTTAAG
1 GGAACCCGGTTCGG-TTTTTTGGGAACCC-GTTCGGTTTTTAAG
64783579 GGAACCCGGTTCGGTTTTTTGGGAACCCAGTTCGGTTTTTAAG
1 GGAACCCGGTTCGGTTTTTTGGGAACCC-GTTCGGTTTTTAAG
64783622 GGAACCCGGTTCGG-TTTTT-GGAACCCGTTCGGTTTTTA
1 GGAACCCGGTTCGGTTTTTTGGGAACCCGTTCGGTTTTTA
64783660 GGTTTGGGTT
Statistics
Matches: 77, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
40 12 0.16
41 7 0.09
42 5 0.06
43 39 0.51
44 14 0.18
ACGTcount: A:0.16, C:0.21, G:0.30, T:0.33
Consensus pattern (42 bp):
GGAACCCGGTTCGGTTTTTTGGGAACCCGTTCGGTTTTTAAG
Found at i:64783693 original size:7 final size:7
Alignment explanation
Indices: 64783656--64788906 Score: 7960
Period size: 7 Copynumber: 744.9 Consensus size: 7
64783646 CCGTTCGGTT
64783656 TTTA-GG
1 TTTAGGG
64783662 TTT-GGG
1 TTTAGGG
64783668 TTTA-GG
1 TTTAGGG
*
64783674 -TT-GGT
1 TTTAGGG
*
64783679 TTTTGGG
1 TTTAGGG
64783686 TTTAGGG
1 TTTAGGG
64783693 TTT-GGG
1 TTTAGGG
64783699 -TT-GGG
1 TTTAGGG
64783704 TTT-GGG
1 TTTAGGG
64783710 -TT-GGG
1 TTTAGGG
*
64783715 GTT--GG
1 TTTAGGG
64783720 TTT-GGG
1 TTTAGGG
64783726 TTT-GGG
1 TTTAGGG
64783732 TTT-GGG
1 TTTAGGG
64783738 -TT--GG
1 TTTAGGG
64783742 TTT--GG
1 TTTAGGG
64783747 TTT-G-G
1 TTTAGGG
*
64783752 TTTATGG
1 TTTAGGG
64783759 TTTAGGG
1 TTTAGGG
64783766 TTTAGGG
1 TTTAGGG
*
64783773 TTT-GGT
1 TTTAGGG
64783779 TTTA-GG
1 TTTAGGG
64783785 TTTAGGG
1 TTTAGGG
64783792 TTTA-GG
1 TTTAGGG
64783798 TTTAGGG
1 TTTAGGG
64783805 TTTAGGG
1 TTTAGGG
64783812 TTT-GGG
1 TTTAGGG
*
64783818 TTTGGGG
1 TTTAGGG
*
64783825 TTTTGGG
1 TTTAGGG
64783832 TTT-GGG
1 TTTAGGG
*
64783838 TTTGGGG
1 TTTAGGG
*
64783845 TTTGGGG
1 TTTAGGG
64783852 TTTAGGG
1 TTTAGGG
64783859 -TT-GGG
1 TTTAGGG
64783864 -TT-GGG
1 TTTAGGG
64783869 TTT-GGG
1 TTTAGGG
*
64783875 GTT-GGG
1 TTTAGGG
64783881 -TT-GGG
1 TTTAGGG
*
64783886 GTT-GGG
1 TTTAGGG
*
64783892 GTT-GGG
1 TTTAGGG
*
64783898 GTT-GGG
1 TTTAGGG
*
64783904 GTT-GGG
1 TTTAGGG
*
64783910 GTT-GGG
1 TTTAGGG
*
64783916 GTT-GGG
1 TTTAGGG
* **
64783922 GTGGGGG
1 TTTAGGG
**
64783929 TTGGGGG
1 TTTAGGG
****
64783936 GGGGGGG
1 TTTAGGG
****
64783943 GGGGGGG
1 TTTAGGG
****
64783950 GGGGGGGG
1 TTTAGG-G
64783958 TTTAGGG
1 TTTAGGG
*
64783965 TTTGGGG
1 TTTAGGG
64783972 TTT-GGG
1 TTTAGGG
*
64783978 TTTGGGG
1 TTTAGGG
64783985 TTT-GGG
1 TTTAGGG
64783991 TTT-GGG
1 TTTAGGG
*
64783997 GTT-GGG
1 TTTAGGG
*
64784003 -TTGGGG
1 TTTAGGG
**
64784009 TTGGGGG
1 TTTAGGG
64784016 TTT-GGG
1 TTTAGGG
*
64784022 GTT-GGG
1 TTTAGGG
*
64784028 GTTAGGGG
1 TTTA-GGG
64784036 TTTAGGGG
1 TTTA-GGG
64784044 TTTAGGG
1 TTTAGGG
64784051 TTTAGGGG
1 TTTA-GGG
64784059 TTTAGGG
1 TTTAGGG
64784066 TTTAGGG
1 TTTAGGG
64784073 TTTAGGG
1 TTTAGGG
64784080 TTTAGGG
1 TTTAGGG
64784087 TTTAGGG
1 TTTAGGG
64784094 TTTAGGG
1 TTTAGGG
64784101 TTTAGGG
1 TTTAGGG
64784108 TTTAGGG
1 TTTAGGG
64784115 TTTAGGG
1 TTTAGGG
64784122 TTTAGGG
1 TTTAGGG
64784129 TTTAGGG
1 TTTAGGG
64784136 TTTAGGG
1 TTTAGGG
64784143 TTTAGGG
1 TTTAGGG
64784150 TTTAGGG
1 TTTAGGG
64784157 TTTAGGG
1 TTTAGGG
64784164 TTTAGGG
1 TTTAGGG
64784171 TTTAGGG
1 TTTAGGG
64784178 TTTAGGG
1 TTTAGGG
64784185 TTTAGGG
1 TTTAGGG
64784192 TTTAGGG
1 TTTAGGG
64784199 TTTAGGG
1 TTTAGGG
64784206 TTTAGGG
1 TTTAGGG
64784213 TTTAGGGG
1 TTTA-GGG
64784221 TTTAGGG
1 TTTAGGG
64784228 TTTAGGG
1 TTTAGGG
64784235 TTTAGGG
1 TTTAGGG
64784242 TTTAGGG
1 TTTAGGG
64784249 TTTAGGG
1 TTTAGGG
64784256 TTTAGGG
1 TTTAGGG
64784263 TTTAGGG
1 TTTAGGG
64784270 TTTAGGG
1 TTTAGGG
64784277 TTTAGGG
1 TTTAGGG
64784284 TTTAGGG
1 TTTAGGG
64784291 TTTAGGG
1 TTTAGGG
64784298 TTTAGGG
1 TTTAGGG
64784305 TTTAGGG
1 TTTAGGG
64784312 TTTAGGG
1 TTTAGGG
64784319 TTTAGGG
1 TTTAGGG
64784326 TTTAGGG
1 TTTAGGG
64784333 TTTTAGGG
1 -TTTAGGG
64784341 TTTAGGG
1 TTTAGGG
64784348 TTTAGGG
1 TTTAGGG
64784355 TTTAGGG
1 TTTAGGG
64784362 TTTAGGG
1 TTTAGGG
64784369 TTTAGGG
1 TTTAGGG
64784376 TTTAGGG
1 TTTAGGG
64784383 TTTTAGGG
1 -TTTAGGG
64784391 TTTAGGG
1 TTTAGGG
64784398 TTTAGGG
1 TTTAGGG
64784405 TTTAGGG
1 TTTAGGG
64784412 TTTAGGG
1 TTTAGGG
64784419 TTTA-GG
1 TTTAGGG
64784425 TTTAGGG
1 TTTAGGG
64784432 TTTAGGG
1 TTTAGGG
64784439 TTTAGGG
1 TTTAGGG
64784446 TTTAGGG
1 TTTAGGG
64784453 TTTAGGG
1 TTTAGGG
64784460 TTTAGGG
1 TTTAGGG
64784467 TTTAGGG
1 TTTAGGG
64784474 TTTTAGGG
1 -TTTAGGG
64784482 TTTAGGG
1 TTTAGGG
64784489 TTTAGGG
1 TTTAGGG
64784496 TTTAGGG
1 TTTAGGG
64784503 TTTAGGG
1 TTTAGGG
64784510 TTTAGGG
1 TTTAGGG
64784517 TTTAGGG
1 TTTAGGG
64784524 TTTAGGG
1 TTTAGGG
64784531 TTTAGGG
1 TTTAGGG
64784538 TTTAGGG
1 TTTAGGG
64784545 TTTAGGG
1 TTTAGGG
64784552 TTTAGGG
1 TTTAGGG
64784559 TTTAGGG
1 TTTAGGG
64784566 TTTAGGG
1 TTTAGGG
64784573 TTTAGGG
1 TTTAGGG
64784580 TTTAGGG
1 TTTAGGG
64784587 TTTAGGG
1 TTTAGGG
64784594 TTTAGGG
1 TTTAGGG
64784601 TTTAGGG
1 TTTAGGG
64784608 TTTAGGG
1 TTTAGGG
64784615 TTTTAGGG
1 -TTTAGGG
64784623 TTTAGGG
1 TTTAGGG
64784630 TTTAGGG
1 TTTAGGG
64784637 TTTTAGGG
1 -TTTAGGG
64784645 TTTTAGGG
1 -TTTAGGG
64784653 TTTAGGG
1 TTTAGGG
64784660 TTTAGGG
1 TTTAGGG
64784667 TTTTAGGG
1 -TTTAGGG
64784675 TTTAGGG
1 TTTAGGG
64784682 TTTTAGGG
1 -TTTAGGG
64784690 TTTAGGG
1 TTTAGGG
64784697 TTTAGGG
1 TTTAGGG
64784704 TTTAGGG
1 TTTAGGG
64784711 TTTAGGG
1 TTTAGGG
64784718 TTTAGGG
1 TTTAGGG
64784725 TTTAGGG
1 TTTAGGG
64784732 TTTAGGG
1 TTTAGGG
64784739 TTT--GG
1 TTTAGGG
64784744 TTTAGGG
1 TTTAGGG
64784751 TTTAGGG
1 TTTAGGG
64784758 TTTAGGG
1 TTTAGGG
64784765 TTTAGGG
1 TTTAGGG
64784772 TTTAGGG
1 TTTAGGG
64784779 TTTAGGG
1 TTTAGGG
64784786 TTTTAGGG
1 -TTTAGGG
64784794 TTTAGGG
1 TTTAGGG
64784801 TTTAGGG
1 TTTAGGG
64784808 TTTAGGG
1 TTTAGGG
64784815 TTTAGGG
1 TTTAGGG
64784822 TTTAGGG
1 TTTAGGG
64784829 TTTAGGG
1 TTTAGGG
64784836 TTTAGGG
1 TTTAGGG
64784843 TTTAGGG
1 TTTAGGG
64784850 TTTAGGG
1 TTTAGGG
64784857 TTTAGGG
1 TTTAGGG
64784864 TTTTAGGG
1 -TTTAGGG
64784872 TTTAGGG
1 TTTAGGG
64784879 TTTAGGG
1 TTTAGGG
64784886 TTTAGGG
1 TTTAGGG
64784893 TTTAGGG
1 TTTAGGG
64784900 TTTAGGG
1 TTTAGGG
64784907 TTTAGGG
1 TTTAGGG
64784914 TTTAGGG
1 TTTAGGG
64784921 TTTAGGG
1 TTTAGGG
64784928 TTTAGGG
1 TTTAGGG
64784935 TTTAGGG
1 TTTAGGG
64784942 TTTAGGGG
1 TTTA-GGG
64784950 TTTAGGG
1 TTTAGGG
64784957 TTTAGGGG
1 TTTA-GGG
64784965 TTTAGGG
1 TTTAGGG
64784972 TTTAGGG
1 TTTAGGG
64784979 TTTTAGGG
1 -TTTAGGG
64784987 TTTAGGG
1 TTTAGGG
64784994 TTTAGGG
1 TTTAGGG
64785001 TTTAGGG
1 TTTAGGG
64785008 TTTAGGG
1 TTTAGGG
64785015 TTTAGGG
1 TTTAGGG
64785022 TTTAGGG
1 TTTAGGG
64785029 TTTAGGG
1 TTTAGGG
64785036 TTTAGGG
1 TTTAGGG
64785043 TTTAGGG
1 TTTAGGG
64785050 TTTAGGG
1 TTTAGGG
64785057 TTTAGGG
1 TTTAGGG
64785064 TTTAGGG
1 TTTAGGG
64785071 -TTAGGG
1 TTTAGGG
64785077 TTTAGGG
1 TTTAGGG
64785084 TTTAGGG
1 TTTAGGG
64785091 TTTAGGG
1 TTTAGGG
64785098 TTTAGGG
1 TTTAGGG
64785105 TTTAGGG
1 TTTAGGG
64785112 TTTAGGG
1 TTTAGGG
64785119 TTTAGGG
1 TTTAGGG
64785126 TTTAGGG
1 TTTAGGG
64785133 TTTAGGG
1 TTTAGGG
64785140 TTTTAGGG
1 -TTTAGGG
64785148 TTTAGGG
1 TTTAGGG
64785155 TTTAGGG
1 TTTAGGG
64785162 TTTAGGG
1 TTTAGGG
64785169 TTTA-GG
1 TTTAGGG
64785175 TTTAGGG
1 TTTAGGG
64785182 TTTAGGG
1 TTTAGGG
64785189 TTTAGGG
1 TTTAGGG
64785196 TTTAGGG
1 TTTAGGG
64785203 TTTAGGG
1 TTTAGGG
64785210 TTTAGGG
1 TTTAGGG
64785217 TTTAGGG
1 TTTAGGG
64785224 TTTAGGG
1 TTTAGGG
64785231 TTTAGGG
1 TTTAGGG
64785238 TTTAGGG
1 TTTAGGG
64785245 TTTAGGG
1 TTTAGGG
64785252 TTTAGGG
1 TTTAGGG
64785259 TTTAGGG
1 TTTAGGG
64785266 TTTAGGG
1 TTTAGGG
64785273 TTTAGGG
1 TTTAGGG
64785280 TTTAGGG
1 TTTAGGG
64785287 TTTAGGG
1 TTTAGGG
64785294 TTTAGGG
1 TTTAGGG
64785301 TTTAGGG
1 TTTAGGG
64785308 TTTAGGG
1 TTTAGGG
64785315 TTTAGGG
1 TTTAGGG
64785322 TTTAGGG
1 TTTAGGG
64785329 TTTAGGG
1 TTTAGGG
64785336 TTTTAGGG
1 -TTTAGGG
64785344 TTTAGGG
1 TTTAGGG
64785351 TTTAGGG
1 TTTAGGG
64785358 TTTAGGG
1 TTTAGGG
64785365 TTTAGGG
1 TTTAGGG
64785372 TTTAGGG
1 TTTAGGG
64785379 TTTAGGG
1 TTTAGGG
64785386 TTTAGGG
1 TTTAGGG
64785393 TTTTAGGG
1 -TTTAGGG
64785401 TTTAGGG
1 TTTAGGG
64785408 TTTTAGGG
1 -TTTAGGG
64785416 TTTAGGG
1 TTTAGGG
64785423 TTTAGGG
1 TTTAGGG
64785430 TTTAGGG
1 TTTAGGG
64785437 TTTAGGG
1 TTTAGGG
64785444 TTTTTTAGGG
1 ---TTTAGGG
64785454 TTTTAGGG
1 -TTTAGGG
64785462 TTTAGGG
1 TTTAGGG
64785469 TTTAGGG
1 TTTAGGG
64785476 TTTAGGG
1 TTTAGGG
64785483 TTTAGGGGG
1 TTTA--GGG
64785492 TTTAGGG
1 TTTAGGG
64785499 TTTAGGG
1 TTTAGGG
64785506 TTTAGGG
1 TTTAGGG
64785513 TTTAGGG
1 TTTAGGG
64785520 TTTAGGG
1 TTTAGGG
64785527 TTTAGGG
1 TTTAGGG
64785534 TTTAGGG
1 TTTAGGG
64785541 TTTAGGG
1 TTTAGGG
64785548 TTTAGGGGG
1 TTTA--GGG
64785557 TTTAGGG
1 TTTAGGG
64785564 TTTAGGG
1 TTTAGGG
64785571 TTTAGGG
1 TTTAGGG
64785578 TTTAGGG
1 TTTAGGG
64785585 TTTAGGG
1 TTTAGGG
64785592 TTTTAGGG
1 -TTTAGGG
64785600 TTTTAGGG
1 -TTTAGGG
64785608 TTTTAGGG
1 -TTTAGGG
64785616 TTTAGGG
1 TTTAGGG
64785623 TTTAGGG
1 TTTAGGG
64785630 TTTAGGG
1 TTTAGGG
64785637 TTTTAGGG
1 -TTTAGGG
64785645 TTTAGGG
1 TTTAGGG
64785652 TTTAGGG
1 TTTAGGG
64785659 TTTAGGG
1 TTTAGGG
64785666 TTTAGGG
1 TTTAGGG
64785673 TTTTAGGG
1 -TTTAGGG
64785681 TTTAGGG
1 TTTAGGG
64785688 TTTTAGGG
1 -TTTAGGG
64785696 TTTAGGG
1 TTTAGGG
64785703 TTTAGGG
1 TTTAGGG
64785710 TTTAGGG
1 TTTAGGG
64785717 TTTTAGGG
1 -TTTAGGG
64785725 TTTAGGG
1 TTTAGGG
64785732 TTTAGGG
1 TTTAGGG
64785739 TTTAGGG
1 TTTAGGG
64785746 TTTAGGG
1 TTTAGGG
64785753 TTTAGGG
1 TTTAGGG
64785760 TTTTAGGG
1 -TTTAGGG
64785768 TTTAGGG
1 TTTAGGG
64785775 TTTAGGG
1 TTTAGGG
64785782 TTTAGGG
1 TTTAGGG
64785789 TTTAGGG
1 TTTAGGG
64785796 TTTAGGG
1 TTTAGGG
64785803 TTTTAGGG
1 -TTTAGGG
64785811 TTTAGGG
1 TTTAGGG
64785818 TTTAGGG
1 TTTAGGG
64785825 TTTAGGG
1 TTTAGGG
64785832 TTTAGGG
1 TTTAGGG
64785839 TTTTAGGG
1 -TTTAGGG
64785847 TTTAGGG
1 TTTAGGG
64785854 TTTTAGGG
1 -TTTAGGG
64785862 TTTAGGG
1 TTTAGGG
64785869 TTTAGGG
1 TTTAGGG
64785876 TTTAGGG
1 TTTAGGG
64785883 TTTTAGGG
1 -TTTAGGG
64785891 TTTAGGG
1 TTTAGGG
64785898 TTTA-GG
1 TTTAGGG
64785904 TTT--GG
1 TTTAGGG
64785909 TTTA-GG
1 TTTAGGG
64785915 TTTAGGG
1 TTTAGGG
*
64785922 TTT---T
1 TTTAGGG
64785926 TTTAGGG
1 TTTAGGG
64785933 TTTAGGG
1 TTTAGGG
64785940 TTTAGGG
1 TTTAGGG
64785947 TTTAGGG
1 TTTAGGG
64785954 TTTTTAGGG
1 --TTTAGGG
64785963 TTTAGGG
1 TTTAGGG
64785970 TTTTAGGG
1 -TTTAGGG
64785978 TTTAGGG
1 TTTAGGG
64785985 TTTAGGGG
1 TTTA-GGG
64785993 TTTAGGG
1 TTTAGGG
64786000 TTTAGGG
1 TTTAGGG
64786007 TTTAGGG
1 TTTAGGG
64786014 -TTAGGG
1 TTTAGGG
64786020 TTTAGGG
1 TTTAGGG
64786027 TTTTAGGG
1 -TTTAGGG
64786035 TTTAGGGG
1 TTTA-GGG
64786043 TTTAGGG
1 TTTAGGG
64786050 TTTTTAGGG
1 --TTTAGGG
64786059 TTTAGGG
1 TTTAGGG
64786066 TTT-GGG
1 TTTAGGG
64786072 TTTAGGG
1 TTTAGGG
64786079 TTTAGGG
1 TTTAGGG
**
64786086 TTT--TT
1 TTTAGGG
**
64786091 TTTTTGG
1 TTTAGGG
64786098 TTTAGGG
1 TTTAGGG
64786105 TTTAGGG
1 TTTAGGG
64786112 TTTTAGGG
1 -TTTAGGG
64786120 TTTAGGG
1 TTTAGGG
64786127 TTTAGGG
1 TTTAGGG
64786134 TTTAGGG
1 TTTAGGG
64786141 TTTAGGG
1 TTTAGGG
64786148 TTTAGGG
1 TTTAGGG
64786155 TTTAGGG
1 TTTAGGG
64786162 TTTTAGGG
1 -TTTAGGG
64786170 TTTAGGG
1 TTTAGGG
64786177 TTTAGGG
1 TTTAGGG
64786184 TTTAGGG
1 TTTAGGG
64786191 TTTAGGG
1 TTTAGGG
64786198 TTTAGGG
1 TTTAGGG
64786205 TTTAGGG
1 TTTAGGG
64786212 TTTAGGG
1 TTTAGGG
64786219 TTTTAGGG
1 -TTTAGGG
64786227 TTTAGGG
1 TTTAGGG
64786234 TTTAGGG
1 TTTAGGG
64786241 TTTTTAGGG
1 --TTTAGGG
64786250 TTTAGGG
1 TTTAGGG
64786257 TTTAGGG
1 TTTAGGG
64786264 TTTAGGG
1 TTTAGGG
64786271 TTTTAGGG
1 -TTTAGGG
64786279 TTTAGGG
1 TTTAGGG
64786286 TTTAGGG
1 TTTAGGG
64786293 TTTAGGG
1 TTTAGGG
64786300 TTTAGGG
1 TTTAGGG
64786307 TTTTAGGG
1 -TTTAGGG
64786315 TTTAGGG
1 TTTAGGG
64786322 TTTAGGG
1 TTTAGGG
64786329 TTTA-GG
1 TTTAGGG
64786335 TTTAGGG
1 TTTAGGG
64786342 TTTAGGG
1 TTTAGGG
64786349 TTTAGGG
1 TTTAGGG
64786356 TTTAGGG
1 TTTAGGG
64786363 TTTAGGG
1 TTTAGGG
64786370 TTTAGGG
1 TTTAGGG
64786377 TTTAGGG
1 TTTAGGG
64786384 TTTA-GG
1 TTTAGGG
64786390 TTTAGGG
1 TTTAGGG
64786397 TTTAGGG
1 TTTAGGG
64786404 TTTAGGG
1 TTTAGGG
64786411 TTTAGGG
1 TTTAGGG
64786418 TTTAGGG
1 TTTAGGG
64786425 TTTAGGG
1 TTTAGGG
64786432 TTTAGGG
1 TTTAGGG
64786439 TTTAGGG
1 TTTAGGG
64786446 TTTAGGG
1 TTTAGGG
64786453 TTTTAGGG
1 -TTTAGGG
64786461 TTTAGGG
1 TTTAGGG
64786468 TTTAGGG
1 TTTAGGG
64786475 TTTAGGG
1 TTTAGGG
64786482 TTTTAGGG
1 -TTTAGGG
64786490 TTTAGGG
1 TTTAGGG
64786497 TTTAGGG
1 TTTAGGG
64786504 TTTAGGG
1 TTTAGGG
64786511 TTTTAGGG
1 -TTTAGGG
64786519 TTTAGGG
1 TTTAGGG
64786526 TTTAGGG
1 TTTAGGG
64786533 TTTAGGGG
1 TTTA-GGG
64786541 TTTAGGG
1 TTTAGGG
64786548 TTTTAGGGG
1 -TTTA-GGG
64786557 TTTAGGG
1 TTTAGGG
64786564 TTTAGGG
1 TTTAGGG
64786571 TTTTTAGGG
1 --TTTAGGG
64786580 TTTAGGG
1 TTTAGGG
64786587 TTTAGGG
1 TTTAGGG
64786594 TTTA-GG
1 TTTAGGG
64786600 TTTAGGG
1 TTTAGGG
64786607 TTTAGGG
1 TTTAGGG
64786614 TTTTAGGG
1 -TTTAGGG
64786622 TTTAGGG
1 TTTAGGG
64786629 TTTAGGG
1 TTTAGGG
64786636 TTTAGGG
1 TTTAGGG
64786643 TTTAGGG
1 TTTAGGG
64786650 TTTAGGG
1 TTTAGGG
64786657 TTTAGGG
1 TTTAGGG
64786664 TTTTAGGG
1 -TTTAGGG
64786672 TTTAGGG
1 TTTAGGG
64786679 TTTAGGG
1 TTTAGGG
64786686 TTTAGGG
1 TTTAGGG
64786693 TTTAGGGGGG
1 TTTA---GGG
64786703 TTTAGGG
1 TTTAGGG
64786710 TTTAGGG
1 TTTAGGG
64786717 TTTAGGG
1 TTTAGGG
64786724 TTTAGGG
1 TTTAGGG
64786731 TTTAGGG
1 TTTAGGG
64786738 TTTAGGG
1 TTTAGGG
64786745 TTTAGGG
1 TTTAGGG
64786752 TTTAGGG
1 TTTAGGG
64786759 TTTTAGGG
1 -TTTAGGG
64786767 TTTAGGG
1 TTTAGGG
64786774 TTTAGGG
1 TTTAGGG
64786781 TTTAGGG
1 TTTAGGG
64786788 TTTTAGGG
1 -TTTAGGG
64786796 TTTAGGG
1 TTTAGGG
64786803 TTTAGGG
1 TTTAGGG
64786810 TTTTAGGG
1 -TTTAGGG
64786818 TTTAGGG
1 TTTAGGG
64786825 TTTAGGG
1 TTTAGGG
64786832 TTTAGGG
1 TTTAGGG
64786839 TTTAGGG
1 TTTAGGG
64786846 TTTAGGG
1 TTTAGGG
64786853 TTTTAGGG
1 -TTTAGGG
64786861 TTTAGGGGG
1 TTTA--GGG
64786870 TTTAGGG
1 TTTAGGG
64786877 TTTAGGG
1 TTTAGGG
64786884 TTTAGGG
1 TTTAGGG
64786891 TTTTAGGG
1 -TTTAGGG
64786899 TTTAGGGTGG
1 TTTA--G-GG
64786909 TTTAGGG
1 TTTAGGG
64786916 TTTAGGG
1 TTTAGGG
64786923 TTTAGGG
1 TTTAGGG
64786930 TTTTAGGG
1 -TTTAGGG
64786938 TTTAGGG
1 TTTAGGG
64786945 TTTTAGGG
1 -TTTAGGG
64786953 TTTAGGG
1 TTTAGGG
64786960 TTTA-GG
1 TTTAGGG
64786966 TTTAGGG
1 TTTAGGG
64786973 TTTAGGG
1 TTTAGGG
****
64786980 TTTTTTTTT
1 --TTTAGGG
64786989 TTTAGGG
1 TTTAGGG
64786996 TTTAGGG
1 TTTAGGG
64787003 TTTTAGGG
1 -TTTAGGG
64787011 TTTAGGG
1 TTTAGGG
64787018 TTTAGGG
1 TTTAGGG
64787025 TTTAGGG
1 TTTAGGG
64787032 TTTAGGG
1 TTTAGGG
64787039 TTTTTAGGG
1 --TTTAGGG
64787048 TTTAGGG
1 TTTAGGG
64787055 TTTAGGG
1 TTTAGGG
64787062 TTTAGGG
1 TTTAGGG
64787069 TTTTAGGG
1 -TTTAGGG
64787077 TTTAGGG
1 TTTAGGG
64787084 TTTTAGGG
1 -TTTAGGG
64787092 TTTAGGG
1 TTTAGGG
64787099 TTTAGGG
1 TTTAGGG
64787106 TTTAGGG
1 TTTAGGG
64787113 TTTAGGG
1 TTTAGGG
64787120 TTTTTAGGG
1 --TTTAGGG
64787129 TTTAGGG
1 TTTAGGG
64787136 TTTAGGG
1 TTTAGGG
64787143 TTTAGGG
1 TTTAGGG
64787150 TTTAGGG
1 TTTAGGG
64787157 TTTTAGGG
1 -TTTAGGG
64787165 TTTAGGG
1 TTTAGGG
64787172 TTTAGGG
1 TTTAGGG
64787179 TTTAGGG
1 TTTAGGG
64787186 TTTAGGG
1 TTTAGGG
64787193 TTTTAGGG
1 -TTTAGGG
64787201 -TTAGGG
1 TTTAGGG
64787207 TTTAGGG
1 TTTAGGG
64787214 TTTAGGG
1 TTTAGGG
64787221 TTTAGGG
1 TTTAGGG
64787228 TTTAGGG
1 TTTAGGG
64787235 TTTTTTAGGG
1 ---TTTAGGG
64787245 TTTAGGG
1 TTTAGGG
64787252 TTTAGGG
1 TTTAGGG
64787259 TTTAGGG
1 TTTAGGG
64787266 TTTAGGG
1 TTTAGGG
64787273 TTTAGGG
1 TTTAGGG
64787280 TTTAGGG
1 TTTAGGG
64787287 TTTAGGG
1 TTTAGGG
**
64787294 TTT--TT
1 TTTAGGG
64787299 TTTAGGG
1 TTTAGGG
64787306 TTTA-GG
1 TTTAGGG
64787312 TTTA-GG
1 TTTAGGG
64787318 TTTAGGG
1 TTTAGGG
64787325 TTTAGGG
1 TTTAGGG
64787332 TTTAGGG
1 TTTAGGG
64787339 TTT-GGG
1 TTTAGGG
*
64787345 TTTAGGT
1 TTTAGGG
64787352 TTTAGGG
1 TTTAGGG
64787359 TTTAGGG
1 TTTAGGG
64787366 TTTAGGG
1 TTTAGGG
64787373 TTTAGGG
1 TTTAGGG
64787380 TTTAGGG
1 TTTAGGG
64787387 TTTAGGG
1 TTTAGGG
64787394 TTTAGGG
1 TTTAGGG
64787401 TTTAGGG
1 TTTAGGG
64787408 TTTAGGG
1 TTTAGGG
64787415 TTTAGGG
1 TTTAGGG
64787422 TTTAGGG
1 TTTAGGG
64787429 TTTAGGG
1 TTTAGGG
64787436 TTTAGGG
1 TTTAGGG
64787443 TTTAGGG
1 TTTAGGG
64787450 TTTATAGGG
1 -TT-TAGGG
64787459 -TT--GG
1 TTTAGGG
64787463 TTTAGGG
1 TTTAGGG
64787470 TTTAGGG
1 TTTAGGG
64787477 TTTAGGG
1 TTTAGGG
64787484 TTTAGGG
1 TTTAGGG
64787491 TTTAGGGG
1 TTTA-GGG
64787499 TTTAGGG
1 TTTAGGG
64787506 TTTAGGG
1 TTTAGGG
64787513 TTTAGGG
1 TTTAGGG
64787520 TTTAGGG
1 TTTAGGG
64787527 TTTAGGG
1 TTTAGGG
64787534 TTTAGGG
1 TTTAGGG
64787541 TTTAGGG
1 TTTAGGG
64787548 TTTAGGG
1 TTTAGGG
64787555 TTTAGGG
1 TTTAGGG
64787562 TTTAGGG
1 TTTAGGG
64787569 TTTAGGG
1 TTTAGGG
64787576 TTTAGGG
1 TTTAGGG
64787583 TTTAGGG
1 TTTAGGG
64787590 TTTAGGG
1 TTTAGGG
64787597 TTTAGGG
1 TTTAGGG
64787604 TTTAGGG
1 TTTAGGG
64787611 TTTAGGG
1 TTTAGGG
64787618 TTTAGGG
1 TTTAGGG
64787625 TTTAGGG
1 TTTAGGG
64787632 TTTAGGG
1 TTTAGGG
64787639 TTTAGGG
1 TTTAGGG
64787646 TTTAGGG
1 TTTAGGG
64787653 TTTAGGG
1 TTTAGGG
64787660 TTTAGGG
1 TTTAGGG
64787667 TTTAGGG
1 TTTAGGG
64787674 TTTAGGG
1 TTTAGGG
64787681 TTTAGGG
1 TTTAGGG
64787688 TTTAGGG
1 TTTAGGG
64787695 TTTAGGG
1 TTTAGGG
64787702 TTTAGGG
1 TTTAGGG
64787709 TTTAGGG
1 TTTAGGG
64787716 TTTAGGG
1 TTTAGGG
64787723 TTTAGGG
1 TTTAGGG
64787730 TTTAGGG
1 TTTAGGG
64787737 TTTAGGG
1 TTTAGGG
64787744 TTTAGGG
1 TTTAGGG
64787751 TTTAGGG
1 TTTAGGG
64787758 TTTAGGG
1 TTTAGGG
64787765 TTTAGGG
1 TTTAGGG
64787772 TTTAGGG
1 TTTAGGG
64787779 TTTAGGG
1 TTTAGGG
64787786 TTTAGGG
1 TTTAGGG
64787793 TTTAGGG
1 TTTAGGG
64787800 TTTAGGG
1 TTTAGGG
64787807 TTTAGGG
1 TTTAGGG
64787814 TTTAGGG
1 TTTAGGG
64787821 TTTA-GG
1 TTTAGGG
64787827 TTTAGGG
1 TTTAGGG
64787834 TTTAGGG
1 TTTAGGG
64787841 TTTAGGG
1 TTTAGGG
64787848 TTTAGGG
1 TTTAGGG
64787855 TTTAGGG
1 TTTAGGG
64787862 TTTAGGG
1 TTTAGGG
64787869 TTTAGGG
1 TTTAGGG
64787876 TTTAGGG
1 TTTAGGG
64787883 TTTAGGG
1 TTTAGGG
64787890 TTTAGGG
1 TTTAGGG
64787897 TTTAGGG
1 TTTAGGG
64787904 TTTAGGG
1 TTTAGGG
64787911 TTTAGGG
1 TTTAGGG
64787918 TTTAGGG
1 TTTAGGG
64787925 TTTAGGG
1 TTTAGGG
64787932 TTTAGGG
1 TTTAGGG
64787939 TTTTAGGG
1 -TTTAGGG
64787947 TTTAGGG
1 TTTAGGG
64787954 TTTAGGG
1 TTTAGGG
64787961 TTTAGGG
1 TTTAGGG
64787968 TTTAGGG
1 TTTAGGG
64787975 TTTAGGG
1 TTTAGGG
64787982 TTTAGGG
1 TTTAGGG
64787989 TTTAGGG
1 TTTAGGG
64787996 TTTAGGG
1 TTTAGGG
64788003 TTTAGGG
1 TTTAGGG
64788010 TTTAGGG
1 TTTAGGG
64788017 TTTAGGG
1 TTTAGGG
64788024 TTTTAGGG
1 -TTTAGGG
64788032 TTTAGGG
1 TTTAGGG
64788039 TTTTTTAGGG
1 ---TTTAGGG
64788049 TTTTAGGG
1 -TTTAGGG
64788057 TTTAGGG
1 TTTAGGG
64788064 TTTAGGG
1 TTTAGGG
64788071 TTTAGGG
1 TTTAGGG
64788078 TTTTTTAGGG
1 ---TTTAGGG
64788088 TTTAGGG
1 TTTAGGG
64788095 TTTAGGG
1 TTTAGGG
64788102 TTTAGGG
1 TTTAGGG
64788109 TTTAGGG
1 TTTAGGG
64788116 TTTAGGG
1 TTTAGGG
64788123 TTTAGGG
1 TTTAGGG
64788130 TTTTTAGGG
1 --TTTAGGG
64788139 TTT-GGG
1 TTTAGGG
64788145 -TTAGGG
1 TTTAGGG
64788151 TTT--GG
1 TTTAGGG
64788156 TTTA-GG
1 TTTAGGG
64788162 -TT-GGG
1 TTTAGGG
64788167 TTTAGGG
1 TTTAGGG
64788174 TTATAGGG
1 TT-TAGGG
64788182 TTTAGGGG
1 TTTA-GGG
64788190 TTTTAGGG
1 -TTTAGGG
64788198 TTTAGGG
1 TTTAGGG
64788205 TTTA-GG
1 TTTAGGG
64788211 TTTAGGG
1 TTTAGGG
64788218 TTTAGGG
1 TTTAGGG
64788225 TTTAGGG
1 TTTAGGG
64788232 TTTAGGG
1 TTTAGGG
64788239 -TTAGGG
1 TTTAGGG
64788245 TTTAGGG
1 TTTAGGG
64788252 TTTAGGG
1 TTTAGGG
64788259 TTTAGGG
1 TTTAGGG
64788266 TTTTAGGG
1 -TTTAGGG
64788274 TTTAGGG
1 TTTAGGG
64788281 TTTTA-GG
1 -TTTAGGG
64788288 TTTAGGG
1 TTTAGGG
64788295 -TTAGGG
1 TTTAGGG
*
64788301 TTTAGGT
1 TTTAGGG
64788308 TTTAGGG
1 TTTAGGG
64788315 TTTAGGG
1 TTTAGGG
64788322 TTTAGGG
1 TTTAGGG
64788329 TTTAGGG
1 TTTAGGG
64788336 TTTTAGGG
1 -TTTAGGG
64788344 TTTTAGGG
1 -TTTAGGG
64788352 TTTAGGG
1 TTTAGGG
64788359 TTTAGGG
1 TTTAGGG
64788366 TTTAGGG
1 TTTAGGG
64788373 TTTTTAGGG
1 --TTTAGGG
64788382 TTTA-GG
1 TTTAGGG
64788388 TTTAGGG
1 TTTAGGG
64788395 TTTAGGG
1 TTTAGGG
64788402 TTTAGGG
1 TTTAGGG
64788409 TTT-GGG
1 TTTAGGG
64788415 TTTTAGGG
1 -TTTAGGG
64788423 TTTA-GG
1 TTTAGGG
64788429 TTTAGGG
1 TTTAGGG
64788436 TTTTAGGG
1 -TTTAGGG
64788444 TTTTTAGGG
1 --TTTAGGG
64788453 TTTAGGG
1 TTTAGGG
64788460 TTTAGGG
1 TTTAGGG
64788467 TTTTAGGG
1 -TTTAGGG
64788475 TTTAGGG
1 TTTAGGG
64788482 TTTAGGG
1 TTTAGGG
64788489 TTTAGGG
1 TTTAGGG
64788496 TTTAGGG
1 TTTAGGG
64788503 TTTAGGG
1 TTTAGGG
64788510 TTTA-GG
1 TTTAGGG
64788516 TTTAAGGG
1 TTT-AGGG
64788524 TTTAGGG
1 TTTAGGG
64788531 TTTA-GG
1 TTTAGGG
64788537 TTTA-GG
1 TTTAGGG
64788543 TTTAGGG
1 TTTAGGG
64788550 TTTAGGG
1 TTTAGGG
64788557 TTTAGGG
1 TTTAGGG
64788564 TTTTAGGG
1 -TTTAGGG
64788572 TTTAGGG
1 TTTAGGG
64788579 TTTTAGGG
1 -TTTAGGG
64788587 TTTTAGGG
1 -TTTAGGG
64788595 TTTAGGG
1 TTTAGGG
64788602 TTTAGGG
1 TTTAGGG
64788609 TTTTAGGG
1 -TTTAGGG
64788617 TTTAGGG
1 TTTAGGG
64788624 TTTAGGG
1 TTTAGGG
64788631 TTTAGGG
1 TTTAGGG
**
64788638 TTT--TT
1 TTTAGGG
*
64788643 TTTTGGG
1 TTTAGGG
64788650 TTTAGGG
1 TTTAGGG
64788657 TTTAGGG
1 TTTAGGG
64788664 TTTTAGGG
1 -TTTAGGG
64788672 TTTAGGG
1 TTTAGGG
64788679 TTTAGGG
1 TTTAGGG
64788686 TTTAGGG
1 TTTAGGG
64788693 TTTAGGG
1 TTTAGGG
64788700 TTTTTTAGGG
1 ---TTTAGGG
64788710 TTTAGGG
1 TTTAGGG
64788717 TTTAGTAGGG
1 -TT--TAGGG
64788727 TTTAGGG
1 TTTAGGG
64788734 TTTTAGGG
1 -TTTAGGG
64788742 TTTAGGGG
1 TTTA-GGG
64788750 TTTAGGG
1 TTTAGGG
64788757 TTTA-GG
1 TTTAGGG
64788763 TTTA-GG
1 TTTAGGG
64788769 TTTAGGG
1 TTTAGGG
64788776 TTTAGGG
1 TTTAGGG
64788783 -TTAGGG
1 TTTAGGG
64788789 TTTA-GG
1 TTTAGGG
64788795 TTTAGGG
1 TTTAGGG
64788802 TTTAGGG
1 TTTAGGG
64788809 TTTAGGG
1 TTTAGGG
64788816 TTTAGGG
1 TTTAGGG
64788823 TTTAGGG
1 TTTAGGG
64788830 TTTTAGGG
1 -TTTAGGG
64788838 TTTAGGG
1 TTTAGGG
64788845 TTTAGGG
1 TTTAGGG
64788852 TTTTTTAGGG
1 ---TTTAGGG
64788862 -TT-GGG
1 TTTAGGG
64788867 TTTAGGG
1 TTTAGGG
64788874 TTT-GGG
1 TTTAGGG
64788880 TTT-GGG
1 TTTAGGG
64788886 TTTAGGG
1 TTTAGGG
64788893 TTTAAGGG
1 TTT-AGGG
64788901 TTTAGG
1 TTTAGG
64788907 NNNNNNNNNN
Statistics
Matches: 4983, Mismatches: 54, Indels: 415
0.91 0.01 0.08
Matches are distributed among these distances:
4 7 0.00
5 80 0.02
6 347 0.07
7 3785 0.76
8 601 0.12
9 103 0.02
10 60 0.01
ACGTcount: A:0.13, C:0.00, G:0.43, T:0.44
Consensus pattern (7 bp):
TTTAGGG
Found at i:64783752 original size:5 final size:5
Alignment explanation
Indices: 64783691--64783754 Score: 56
Period size: 5 Copynumber: 12.0 Consensus size: 5
64783681 TTGGGTTTAG
* * * *
64783691 GGTTT GGGTTG GGTTT GGGTTG GGGTT GGTTT GGGTTT GGGTTT GGGTT
1 GGTTT -GGTTT GGTTT -GGTTT GGTTT GGTTT -GGTTT -GGTTT GGTTT
64783740 GGTTT GGTTT GGTTT
1 GGTTT GGTTT GGTTT
64783755 ATGGTTTAGG
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
5 29 0.60
6 19 0.40
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (5 bp):
GGTTT
Found at i:64783935 original size:1 final size:1
Alignment explanation
Indices: 64783931--64783957 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
64783921 GGTGGGGGTT
64783931 GGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGG
64783958 TTTAGGGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:64803323 original size:19 final size:20
Alignment explanation
Indices: 64803287--64803325 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
64803277 ACCTTAAAAA
64803287 TTTAAATTATATTAAATTTT
1 TTTAAATTATATTAAATTTT
64803307 TTTAAACTTAT-TT-AATTTT
1 TTTAAA-TTATATTAAATTTT
64803326 AAAACAATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 8 0.44
21 4 0.22
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTAAATTATATTAAATTTT
Found at i:64817915 original size:16 final size:18
Alignment explanation
Indices: 64817878--64817915 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
64817868 TTTCGGAATT
*
64817878 TTCAAGATTTTTTTATAC
1 TTCAAGATTTTTTAATAC
64817896 TTCAA-ATTTTTTAATA-
1 TTCAAGATTTTTTAATAC
64817912 TTCA
1 TTCA
64817916 TTTTAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 4 0.21
17 10 0.53
18 5 0.26
ACGTcount: A:0.32, C:0.11, G:0.03, T:0.55
Consensus pattern (18 bp):
TTCAAGATTTTTTAATAC
Found at i:64823250 original size:40 final size:40
Alignment explanation
Indices: 64823198--64823273 Score: 143
Period size: 40 Copynumber: 1.9 Consensus size: 40
64823188 ATATTTTATC
*
64823198 AATATTTTTATAGCTATCCCAAAAATAAAATATAATAATT
1 AATAATTTTATAGCTATCCCAAAAATAAAATATAATAATT
64823238 AATAATTTTATAGCTATCCCAAAAATAAAATATAAT
1 AATAATTTTATAGCTATCCCAAAAATAAAATATAAT
64823274 TTTCAAGCAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.51, C:0.11, G:0.03, T:0.36
Consensus pattern (40 bp):
AATAATTTTATAGCTATCCCAAAAATAAAATATAATAATT
Found at i:64823467 original size:176 final size:174
Alignment explanation
Indices: 64823215--64823535 Score: 380
Period size: 175 Copynumber: 1.8 Consensus size: 174
64823205 TTATAGCTAT
* * * *
64823215 CCCAAAAATAAAATATAATAATTAATAATTTTATAGCTATCCCAAAAATAAAATATAATTTTCAA
1 CCCAAAAATAAAATATAAAAAATAATAATTTTATAGCTATCCCAAAAATAAAATAAAATTTACAA
* * * * * *
64823280 GCATCATACTCAAGCACAAGTTTTCCGAAAATGAAATATAACAAATAATATATTTTT-TAATTTT
66 GCATCATACTCAAACACAAG-TGTCCAAAAATAAAATAGAACAAATAATA-ATTTTTATAATTAT
**
64823344 TTTGGAAAATAAAAAAAATTGTAGCATCATGCTCAAGCCAAATTTC
129 TTCAGAAAATAAAAAAAATTGTAGCATCATGCTCAAGCCAAATTTC
* * * *
64823390 CCCAAGAATGAAATATAAAAAATAATAGTTTTTATAGTTATCTCC-AAAATAAAATAAAAATTTA
1 CCCAAAAATAAAATATAAAAAATAATA-ATTTTATAGCTATC-CCAAAAATAAAAT-AAAATTTA
** * *
64823454 C-AGCA-CTATACTCAAATTCGAGTGTCCAAAAATAAAATAGAATAAATAATAATTTTTATAATT
63 CAAGCATC-ATACTCAAACACAAGTGTCCAAAAATAAAATAGAACAAATAATAATTTTTATAATT
64823517 ATTTCAGAAAATAAAAAAA
127 ATTTCAGAAAATAAAAAAA
64823536 TATTTTTGCA
Statistics
Matches: 121, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
174 6 0.05
175 69 0.57
176 37 0.31
177 9 0.07
ACGTcount: A:0.50, C:0.12, G:0.07, T:0.31
Consensus pattern (174 bp):
CCCAAAAATAAAATATAAAAAATAATAATTTTATAGCTATCCCAAAAATAAAATAAAATTTACAA
GCATCATACTCAAACACAAGTGTCCAAAAATAAAATAGAACAAATAATAATTTTTATAATTATTT
CAGAAAATAAAAAAAATTGTAGCATCATGCTCAAGCCAAATTTC
Found at i:64823501 original size:88 final size:90
Alignment explanation
Indices: 64823390--64823606 Score: 253
Period size: 90 Copynumber: 2.4 Consensus size: 90
64823380 GCCAAATTTC
* * * * *
64823390 CCCAAGAATGAAATATAAAAAATAATAGTTTTTATAGTTATCTC-CAAAATAAAATAAA-A-ATT
1 CCCAAAAATAAAATATAATAAATAATAATTTTTATAATTATCTCACAAAATAAAA-AAATATATT
* * *
64823452 TACAGCACTATACTCAA-ATTCGAGTG
65 TACAACACTATACTCAAGACT-AAGTG
* * * * *
64823478 TCCAAAAATAAAATAGAATAAATAATAATTTTTATAATTATTTCAGAAAATAAAAAAATATTTTT
1 CCCAAAAATAAAATATAATAAATAATAATTTTTATAATTATCTCACAAAATAAAAAAATATATTT
*
64823543 GCAACACTATACTCAAGACTAAGTG
66 ACAACACTATACTCAAGACTAAGTG
*
64823568 CCCAAAAATATAATATAATAAATAATAATTTTTATAATT
1 CCCAAAAATAAAATATAATAAATAATAATTTTTATAATT
64823607 TTCCTGCTTA
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
88 39 0.36
89 10 0.09
90 57 0.53
91 2 0.02
ACGTcount: A:0.50, C:0.11, G:0.06, T:0.32
Consensus pattern (90 bp):
CCCAAAAATAAAATATAATAAATAATAATTTTTATAATTATCTCACAAAATAAAAAAATATATTT
ACAACACTATACTCAAGACTAAGTG
Done.