Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 24 of 221
Found at i:6728863 original size:27 final size:27
Alignment explanation
Indices: 6728821--6728880 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
6728811 AATTTTTATT
6728821 TTTATTATTATTTTTT-TCTTTACTTTA
1 TTTATTATTATTTTTTAT-TTTACTTTA
*
6728848 TTTATTATT-TTATTTTATTTTATTTTA
1 TTTATTATTATT-TTTTATTTTACTTTA
*
6728875 CTTATT
1 TTTATT
6728881 TGGATATTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 2 0.07
27 26 0.90
28 1 0.03
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (27 bp):
TTTATTATTATTTTTTATTTTACTTTA
Found at i:6729912 original size:16 final size:15
Alignment explanation
Indices: 6729891--6729920 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
6729881 TAAAGCATAA
6729891 AAAAAGAGAAAAAAAC
1 AAAAAGA-AAAAAAAC
6729907 AAAAAGAAAAAAAA
1 AAAAAGAAAAAAAA
6729921 ATAATTTGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.87, C:0.03, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAAAAAC
Found at i:6729921 original size:16 final size:16
Alignment explanation
Indices: 6729891--6729921 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6729881 TAAAGCATAA
*
6729891 AAAAAGAGAAAAAAAC
1 AAAAAGAAAAAAAAAC
6729907 AAAAAGAAAAAAAAA
1 AAAAAGAAAAAAAAA
6729922 TAATTTGGGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.87, C:0.03, G:0.10, T:0.00
Consensus pattern (16 bp):
AAAAAGAAAAAAAAAC
Found at i:6731717 original size:13 final size:13
Alignment explanation
Indices: 6731693--6731727 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
6731683 TGTATTGGAC
6731693 TTTTATTATATTTA
1 TTTTA-TATATTTA
*
6731707 TTTTATATATTTT
1 TTTTATATATTTA
6731720 TTTTATAT
1 TTTTATAT
6731728 TTGGGTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 15 0.75
14 5 0.25
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTTATATATTTA
Found at i:6732545 original size:218 final size:218
Alignment explanation
Indices: 6732092--6732529 Score: 535
Period size: 218 Copynumber: 2.0 Consensus size: 218
6732082 TGCTCCGCTG
* *
6732092 CAACTTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATTTAT
1 CAACCTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTAT
* * * *
6732157 TATTTTAATTCGCTCCGCTGCAACCTCAGGGAGATAAGATTAGTGGCTTCAATCTACTCCAGTGT
66 TATTTTAATTCACTCCGCTGCAACCTCAGGGAGATAAGATTAATGGCTTCAATCTACTCCACTGC
* * *
6732222 AACCTCAGGGAGGTAAAATCAGCCACCTTCAGTCTGCCCCACTGCAACTTCATGGGGATAAGACC
131 AACCTCAAGGAGATAAAATCAGCCACCTTCAGTCTGCCCCACTACAACTTCATGGGGATAAGACC
* ** * *
6732287 TACTTACTCAGTCTGCTCCACTG
196 TAATTACTCAACCTACTCCACTA
* * *
6732310 CAACCTCAGAGAGATAAGACTTGATGCGATCCACTCTACTGCAACTTTAGAGAGATAAGATCTAT
1 CAACCTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTAT
* * *
6732375 TATTTTAA-TCTACTCCGCTGCAACTTCAGGGAGATAGGATTAATGGCTTCAATCTGCTCCACTG
66 TATTTTAATTC-ACTCCGCTGCAACCTCAGGGAGATAAGATTAATGGCTTCAATCTACTCCACTG
* * ** * * **
6732439 CAACCTGAAGGAGATAAGATTTGCCATCTTC-GATCTGCTCCACTACTGCTT-A-GGGAGATAAG
130 CAACCTCAAGGAGATAAAATCAGCCACCTTCAG-TCTGCCCCACTACAACTTCATGGG-GATAAG
6732501 ATCGCTAATT-CTTCAACCTACTCCACTA
193 A-C-CTAATTAC-TCAACCTACTCCACTA
6732529 C
1 C
6732530 TGCTTAGGGA
Statistics
Matches: 186, Mismatches: 28, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
216 3 0.02
217 11 0.06
218 154 0.83
219 18 0.10
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (218 bp):
CAACCTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTAT
TATTTTAATTCACTCCGCTGCAACCTCAGGGAGATAAGATTAATGGCTTCAATCTACTCCACTGC
AACCTCAAGGAGATAAAATCAGCCACCTTCAGTCTGCCCCACTACAACTTCATGGGGATAAGACC
TAATTACTCAACCTACTCCACTA
Found at i:6732600 original size:44 final size:44
Alignment explanation
Indices: 6732510--6732765 Score: 318
Period size: 44 Copynumber: 5.8 Consensus size: 44
6732500 GATCGCTAAT
* * *
6732510 TCTTCAACCTACTCCACTACTG-CTTAGGGAGATAAGGCTT-ACAA
1 TCTTCAACCTACTCCACTGCTGTC-CAGGGAGAT-AGGATTCACAA
* * * * *
6732554 TCTTCAACCTATTCCACTGTTGTCCCGGGATATAGGATTCATAA
1 TCTTCAACCTACTCCACTGCTGTCCAGGGAGATAGGATTCACAA
* *
6732598 TCTTTAACCTACTCCACTGCTATCCAGGGAGATAGGATTCACAA
1 TCTTCAACCTACTCCACTGCTGTCCAGGGAGATAGGATTCACAA
*
6732642 TCTTCAACCTACTCTACTGCTGTCCAGGGAGATAGGATTCACAA
1 TCTTCAACCTACTCCACTGCTGTCCAGGGAGATAGGATTCACAA
* * *
6732686 TCTTTAACCTACTCCACTACTGTGCAGGGAGATAGGATTCACAA
1 TCTTCAACCTACTCCACTGCTGTCCAGGGAGATAGGATTCACAA
* ** *
6732730 TCTTCAACCTATTCCACTATTGTCCTGGGAGATAGG
1 TCTTCAACCTACTCCACTGCTGTCCAGGGAGATAGG
6732766 GATGGGGTCA
Statistics
Matches: 183, Mismatches: 27, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
43 5 0.03
44 177 0.97
45 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.29
Consensus pattern (44 bp):
TCTTCAACCTACTCCACTGCTGTCCAGGGAGATAGGATTCACAA
Found at i:6735051 original size:27 final size:26
Alignment explanation
Indices: 6735012--6735080 Score: 79
Period size: 27 Copynumber: 2.5 Consensus size: 26
6735002 TTTCATCATT
6735012 TTTTTTGTTTTTATTTTAATT-ATTTT-A
1 TTTTTT-TTTTTATTTT--TTGATTTTGA
6735039 TCTTTTTTTTTTATTTTTTGATTTTGA
1 T-TTTTTTTTTTATTTTTTGATTTTGA
6735066 TTTCTTTTTTTTATT
1 TTT-TTTTTTTTATT
6735081 GAATCTGAAC
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
25 2 0.05
26 7 0.18
27 24 0.63
28 5 0.13
ACGTcount: A:0.13, C:0.03, G:0.04, T:0.80
Consensus pattern (26 bp):
TTTTTTTTTTTATTTTTTGATTTTGA
Found at i:6739974 original size:23 final size:22
Alignment explanation
Indices: 6739833--6739974 Score: 63
Period size: 23 Copynumber: 6.0 Consensus size: 22
6739823 TTTTTCTTTT
* * *
6739833 AAAATAATGCCTAATAAATCTGA
1 AAAATAATACATAATAAAT-TTA
*
6739856 AATGATAATACATAATAAATTTA
1 AA-AATAATACATAATAAATTTA
* *
6739879 AAAATAAATATATAATAAATCTA
1 AAAAT-AATACATAATAAATTTA
* *
6739902 AGCTAATAATACATAA-AAGTTTA
1 A--AAATAATACATAATAAATTTA
*** *
6739925 TGATGTTAATA-ATATATTGTAATTTA
1 --AAAATAATACATA-A-T-AAATTTA
6739951 AAAATAATACATAATGAAATTTA
1 AAAATAATACATAAT-AAATTTA
6739974 A
1 A
6739975 CGCTAATATA
Statistics
Matches: 89, Mismatches: 19, Indels: 22
0.68 0.15 0.17
Matches are distributed among these distances:
22 5 0.06
23 43 0.48
24 29 0.33
25 7 0.08
26 5 0.06
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.34
Consensus pattern (22 bp):
AAAATAATACATAATAAATTTA
Found at i:6740089 original size:20 final size:20
Alignment explanation
Indices: 6740048--6740096 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
6740038 GTACATATAT
*
6740048 ATATAAAT-AGATAAATAAA
1 ATATAAATAACATAAATAAA
* *
6740067 ATATAAATAACATAATTACA
1 ATATAAATAACATAAATAAA
*
6740087 ATATCAATAA
1 ATATAAATAA
6740097 GGCTAGTGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 8 0.32
20 17 0.68
ACGTcount: A:0.63, C:0.06, G:0.02, T:0.29
Consensus pattern (20 bp):
ATATAAATAACATAAATAAA
Found at i:6748758 original size:20 final size:20
Alignment explanation
Indices: 6748733--6748770 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
6748723 ACCCCCTTTA
6748733 TTAACATAAA-AATTTAAAAT
1 TTAACA-AAATAATTTAAAAT
6748753 TTAACAAAATAATTTAAA
1 TTAACAAAATAATTTAAA
6748771 CTAGAAAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (20 bp):
TTAACAAAATAATTTAAAAT
Found at i:6758975 original size:40 final size:40
Alignment explanation
Indices: 6758877--6759139 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
6758867 TCCTCGTTCA
* * * * *
6758877 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
6758916 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
6758956 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
6758996 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
6759036 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
6759076 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
6759116 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
6759140 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:6776084 original size:30 final size:28
Alignment explanation
Indices: 6776041--6776099 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 28
6776031 AAATATTATA
*
6776041 AAATAAAAAAAAAAAATAAAAAATAATC
1 AAATAAAAAAAAAAAAAAAAAAATAATC
*
6776069 AAATAAAAATTAAAAAAAAAAAAAATTATC
1 AAATAAAAA--AAAAAAAAAAAAAATAATC
6776099 A
1 A
6776100 TTCATAATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
28 9 0.33
30 18 0.67
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (28 bp):
AAATAAAAAAAAAAAAAAAAAAATAATC
Found at i:6787155 original size:20 final size:21
Alignment explanation
Indices: 6787130--6787169 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
6787120 TATATTATCA
6787130 TTTAAAATAATA-CATATTTG
1 TTTAAAATAATATCATATTTG
* *
6787150 TTTAAATTATTATCATATTT
1 TTTAAAATAATATCATATTT
6787170 TTAATTTATC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.40, C:0.05, G:0.03, T:0.53
Consensus pattern (21 bp):
TTTAAAATAATATCATATTTG
Found at i:6794993 original size:15 final size:15
Alignment explanation
Indices: 6794973--6795014 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
6794963 ATCATTACGG
6794973 CCCAATTAGCCTAAA
1 CCCAATTAGCCTAAA
* *
6794988 CCCAATTAGCTTTAA
1 CCCAATTAGCCTAAA
6795003 CCCAACTTAGCC
1 CCCAA-TTAGCC
6795015 CAAGACTCTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 18 0.78
16 5 0.22
ACGTcount: A:0.33, C:0.36, G:0.07, T:0.24
Consensus pattern (15 bp):
CCCAATTAGCCTAAA
Found at i:6800509 original size:75 final size:75
Alignment explanation
Indices: 6800419--6800569 Score: 293
Period size: 75 Copynumber: 2.0 Consensus size: 75
6800409 TTTCACGGTC
*
6800419 TCAAATTATGTCTTAAAATTTTAAGATCATTTTAGGTTTGTTAAAAACATCAATAGTTTAGAAAG
1 TCAAATTATGTCTTAAAATTTTAAGATCATTTTAGGTTTGCTAAAAACATCAATAGTTTAGAAAG
6800484 TTAGAATTGT
66 TTAGAATTGT
6800494 TCAAATTATGTCTTAAAATTTTAAGATCATTTTAGGTTTGCTAAAAACATCAATAGTTTAGAAAG
1 TCAAATTATGTCTTAAAATTTTAAGATCATTTTAGGTTTGCTAAAAACATCAATAGTTTAGAAAG
6800559 TTAGAATTGT
66 TTAGAATTGT
6800569 T
1 T
6800570 GCTTGAGGCG
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.38, C:0.07, G:0.13, T:0.41
Consensus pattern (75 bp):
TCAAATTATGTCTTAAAATTTTAAGATCATTTTAGGTTTGCTAAAAACATCAATAGTTTAGAAAG
TTAGAATTGT
Found at i:6807055 original size:9 final size:9
Alignment explanation
Indices: 6807038--6807074 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
6807028 TGATTTTTCG
6807038 AATTCGAAT
1 AATTCGAAT
*
6807047 AACTCGAAT
1 AATTCGAAT
6807056 AATTCGAAT
1 AATTCGAAT
6807065 AATTCGAAT
1 AATTCGAAT
6807074 A
1 A
6807075 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:6808109 original size:5 final size:5
Alignment explanation
Indices: 6808099--6808124 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
6808089 CTCGAAAATT
6808099 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
6808125 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:6808621 original size:11 final size:11
Alignment explanation
Indices: 6808592--6808624 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
6808582 TTATTTTAGA
6808592 TTTCGATTTTAT
1 TTTC-ATTTTAT
6808604 TTT-ATTTTAT
1 TTTCATTTTAT
6808614 TTTCATTTTAT
1 TTTCATTTTAT
6808625 CTTCTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 10 0.50
11 7 0.35
12 3 0.15
ACGTcount: A:0.18, C:0.06, G:0.03, T:0.73
Consensus pattern (11 bp):
TTTCATTTTAT
Found at i:6809449 original size:21 final size:19
Alignment explanation
Indices: 6809389--6809449 Score: 56
Period size: 18 Copynumber: 3.2 Consensus size: 19
6809379 ATTAGTTTTA
*
6809389 TTATTATTATTATT-GCAT
1 TTATTATTATTATTACCAT
*
6809407 TTATTATTATTACCTACC--
1 TTATTATTATTA-TTACCAT
6809425 TTATTATTATTATTTACCCAT
1 TTATTATTATTA-TTA-CCAT
6809446 TTAT
1 TTAT
6809450 ACCGTTTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
18 26 0.76
19 3 0.09
20 1 0.03
21 4 0.12
ACGTcount: A:0.28, C:0.13, G:0.02, T:0.57
Consensus pattern (19 bp):
TTATTATTATTATTACCAT
Found at i:6809549 original size:18 final size:18
Alignment explanation
Indices: 6809518--6809552 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
6809508 ATGTACGTAC
* *
6809518 TTATATTTTTTATATACT
1 TTATAATTTATATATACT
6809536 TTATAATTTATATATAC
1 TTATAATTTATATATAC
6809553 ATATATACAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (18 bp):
TTATAATTTATATATACT
Found at i:6819172 original size:143 final size:143
Alignment explanation
Indices: 6818912--6819613 Score: 1057
Period size: 143 Copynumber: 4.9 Consensus size: 143
6818902 CTACCCAAAT
* *
6818912 TGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAAATTAAAGCTAAAAATTATGGCG
1 TGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTACAAATTATGGCG
6818977 GATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTG
66 GATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTG
* *
6819042 CAGCGGAGTACAC
131 CAGCGGAGCAGAC
* * * * * * * *
6819055 TAAAGACAACAAATCTTATTTCCCTGGCGTTGTAGTAGAACAAATTAAAGATACAAATTATGGCT
1 TGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTACAAATTATGGCG
* * * *
6819120 GATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTGCATGAGGTTG
66 GATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTG
* *
6819185 TAGCGGAGTAGAC
131 CAGCGGAGCAGAC
* * * *
6819198 TGAAGACAGTGAATCTTATTTCCTTGGCATTGCATTGGAACAGATTAAAGCTACAAATTATGGCG
1 TGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTACAAATTATGGCG
*
6819263 GATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTG
66 GATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTG
*
6819328 CAACGGAGCAGAC
131 CAGCGGAGCAGAC
* *
6819341 TGAAGACAGCGAATCTTATTTCCCTTGCGTTGCAGT-GAGACAGATTAAAGTTACAAATTATGGC
1 TGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGA-ACAGATTAAAGCTACAAATTATGGC
**
6819405 GGATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTAACTGAAGTT
65 GGATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTT
* *
6819470 GAAGCAGAGCAGAC
130 GCAGCGGAGCAGAC
** *
6819484 TGAAGACAGCGAATCTTATTTCCCTAACGTTGCAGTGGAATAGATTAAAGCTACAAATTATGGCG
1 TGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTACAAATTATGGCG
* *
6819549 GATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGATGCCACCAATCC-TATCTCCCTGAAGTT
66 GATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACC-AGCCTTATCTCCCTGAAGTT
6819613 G
130 G
6819614 TAGTGAAGTG
Statistics
Matches: 504, Mismatches: 52, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
142 2 0.00
143 497 0.99
144 5 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (143 bp):
TGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTACAAATTATGGCG
GATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTG
CAGCGGAGCAGAC
Found at i:6820324 original size:19 final size:20
Alignment explanation
Indices: 6820302--6820339 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
6820292 TTTTTACTTT
6820302 TCTATTTTTTT-TCTTTTTC
1 TCTATTTTTTTATCTTTTTC
6820321 TCTATTTTTTTATCTTTTT
1 TCTATTTTTTTATCTTTTT
6820340 TTCCTTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.08, C:0.13, G:0.00, T:0.79
Consensus pattern (20 bp):
TCTATTTTTTTATCTTTTTC
Found at i:6820331 original size:20 final size:19
Alignment explanation
Indices: 6820302--6820339 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
6820292 TTTTTACTTT
*
6820302 TCTATTTTTTTTCTTTTTC
1 TCTATTTTTTATCTTTTTC
6820321 TCTATTTTTTTATCTTTTT
1 TCTA-TTTTTTATCTTTTT
6820340 TTCCTTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.08, C:0.13, G:0.00, T:0.79
Consensus pattern (19 bp):
TCTATTTTTTATCTTTTTC
Found at i:6821247 original size:26 final size:25
Alignment explanation
Indices: 6821137--6821545 Score: 176
Period size: 26 Copynumber: 16.1 Consensus size: 25
6821127 GTTTATTTAT
* *
6821137 TTATTTTAAAATCTTTTCATATATTA
1 TTATTTTAAACTATTTT-ATATATTA
*
6821163 CTTATTTGAAACTATTTTAT-TATTA
1 -TTATTTTAAACTATTTTATATATTA
* *
6821188 CTTATTTTAAGATTTTTTTCATATATTA
1 -TTATTTTAA-ACTATTTT-ATATATTA
*
6821216 TTATTTTAAACTATTTTATACATTA
1 TTATTTTAAACTATTTTATATATTA
* * **
6821241 TTCATTTTAAATTGTTTTATATGGTA
1 TT-ATTTTAAACTATTTTATATATTA
* *
6821267 TTCATTTCAAACTATTTTAT-TGTATA
1 TT-ATTTTAAACTATTTTATATAT-TA
*
6821293 TTATTTTAAACTATTATATAT-TTAA
1 TTATTTTAAACTATTTTATATATT-A
* *
6821318 TTTATTTTAAATTACTTTATATA-TA
1 -TTATTTTAAACTATTTTATATATTA
** * *
6821343 -T-TTTCGAACTGTTTTATATTTTA
1 TTATTTTAAACTATTTTATATATTA
* * * * **
6821366 TT-TATGATAAGTTTTTTCATATGGT-
1 TTATTTTA-AACTATTTT-ATATATTA
* * *
6821391 TTATTTTGAACCATTTTCTATATTA
1 TTATTTTAAACTATTTTATATATTA
* *
6821416 TTTATTTTAAATTTTTTTCATATATTA
1 -TTATTTTAAACTATTTT-ATATATTA
* *
6821443 TTTGTTTTAAACT-TTTT-TGTATTA
1 -TTATTTTAAACTATTTTATATATTA
* * * * * *
6821467 TTTACTTTAAATTGTTTCATTTATCA
1 -TTATTTTAAACTATTTTATATATTA
*
6821493 TTTATTTTAAAC-CTTTT-TATATTA
1 -TTATTTTAAACTATTTTATATATTA
* * * *
6821517 TTTACTTTAAATTTTTTTTACATATTA
1 -TTATTTTAAA-CTATTTTATATATTA
6821544 TT
1 TT
6821546 TTGTTTCGTT
Statistics
Matches: 291, Mismatches: 69, Indels: 45
0.72 0.17 0.11
Matches are distributed among these distances:
22 13 0.04
23 3 0.01
24 39 0.13
25 64 0.22
26 118 0.41
27 49 0.17
28 5 0.02
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.59
Consensus pattern (25 bp):
TTATTTTAAACTATTTTATATATTA
Found at i:6821435 original size:51 final size:48
Alignment explanation
Indices: 6821377--6821547 Score: 166
Period size: 50 Copynumber: 3.4 Consensus size: 48
6821367 TTATGATAAG
* * *
6821377 TTTTTTCATATGGTTTATTTTGAACCATTTTCTATATTATTTATTTTAAAT
1 TTTTTTCATAT-ATTTATTTTAAACC-TTTT-TATATTATTTACTTTAAAT
* * *
6821428 TTTTTTCATATATTATTTGTTTTAAACTTTTTTGTATTATTTACTTTAAA-
1 TTTTTTC--ATA-TATTTATTTTAAACCTTTTTATATTATTTACTTTAAAT
*
6821478 TTGTTTCATTTATCATTTATTTTAAACCTTTTTATATTATTTACTTTAAAT
1 TTTTTTCA--TAT-ATTTATTTTAAACCTTTTTATATTATTTACTTTAAAT
* *
6821529 TTTTTTTACATA-TTATTTT
1 TTTTTTCATATATTTATTTT
6821548 GTTTCGTTTT
Statistics
Matches: 100, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
47 7 0.07
48 2 0.02
49 3 0.03
50 41 0.41
51 29 0.29
52 4 0.04
53 13 0.13
54 1 0.01
ACGTcount: A:0.26, C:0.08, G:0.04, T:0.63
Consensus pattern (48 bp):
TTTTTTCATATATTTATTTTAAACCTTTTTATATTATTTACTTTAAAT
Found at i:6821510 original size:50 final size:50
Alignment explanation
Indices: 6821390--6821529 Score: 181
Period size: 50 Copynumber: 2.7 Consensus size: 50
6821380 TTTCATATGG
* * * *
6821390 TTTATTTTGAACCATTTTCTATATTATTTATTTTAAATTTTTTTCATATATTA
1 TTTATTTTAAACC-TTTT-TATATTATTTACTTTAAA-TTGTTTCATATATCA
* * * *
6821443 TTTGTTTTAAACTTTTTTGTATTATTTACTTTAAATTGTTTCATTTATCA
1 TTTATTTTAAACCTTTTTATATTATTTACTTTAAATTGTTTCATATATCA
6821493 TTTATTTTAAACCTTTTTATATTATTTACTTTAAATT
1 TTTATTTTAAACCTTTTTATATTATTTACTTTAAATT
6821530 TTTTTTACAT
Statistics
Matches: 76, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
50 46 0.61
51 16 0.21
52 4 0.05
53 10 0.13
ACGTcount: A:0.27, C:0.08, G:0.03, T:0.62
Consensus pattern (50 bp):
TTTATTTTAAACCTTTTTATATTATTTACTTTAAATTGTTTCATATATCA
Found at i:6823509 original size:5 final size:5
Alignment explanation
Indices: 6823494--6823538 Score: 51
Period size: 5 Copynumber: 9.4 Consensus size: 5
6823484 CTCTTTTTTT
*
6823494 TTGCA TT-CA TTGCA TT-CA -TGCA TTATCA TTGCA TTGCA TTGCA TT
1 TTGCA TTGCA TTGCA TTGCA TTGCA TT-GCA TTGCA TTGCA TTGCA TT
6823539 ATATGCATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
3 1 0.03
4 8 0.24
5 21 0.62
6 4 0.12
ACGTcount: A:0.22, C:0.20, G:0.13, T:0.44
Consensus pattern (5 bp):
TTGCA
Found at i:6823533 original size:10 final size:9
Alignment explanation
Indices: 6823494--6823547 Score: 58
Period size: 9 Copynumber: 5.8 Consensus size: 9
6823484 CTCTTTTTTT
6823494 TTGCATTCA
1 TTGCATTCA
6823503 TTGCATTCA
1 TTGCATTCA
6823512 -TGCATTATCA
1 TTGCA-T-TCA
6823522 TTGCATTGCA
1 TTGCATT-CA
6823532 TTGCATT-A
1 TTGCATTCA
6823540 TATGCATT
1 T-TGCATT
6823548 AAATCTCACA
Statistics
Matches: 40, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
8 6 0.15
9 17 0.43
10 13 0.32
11 4 0.10
ACGTcount: A:0.24, C:0.19, G:0.13, T:0.44
Consensus pattern (9 bp):
TTGCATTCA
Found at i:6823545 original size:19 final size:18
Alignment explanation
Indices: 6823494--6823547 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 18
6823484 CTCTTTTTTT
6823494 TTGCATTCAT-TGCATTCA
1 TTGCATT-ATATGCATTCA
6823512 -TGCATTATCATTGCATTGCA
1 TTGCATTAT-A-TGCATT-CA
6823532 TTGCATTATATGCATT
1 TTGCATTATATGCATT
6823548 AAATCTCACA
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
16 2 0.06
17 6 0.19
19 12 0.39
20 3 0.10
21 8 0.26
ACGTcount: A:0.24, C:0.19, G:0.13, T:0.44
Consensus pattern (18 bp):
TTGCATTATATGCATTCA
Found at i:6823547 original size:24 final size:19
Alignment explanation
Indices: 6823500--6823540 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
6823490 TTTTTTGCAT
6823500 TCATTGCATTCATGCATTA
1 TCATTGCATTCATGCATTA
6823519 TCATTGCATTGCATTGCATTA
1 TCATTGCATT-CA-TGCATTA
6823540 T
1 T
6823541 ATGCATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 10 0.50
20 2 0.10
21 8 0.40
ACGTcount: A:0.24, C:0.20, G:0.12, T:0.44
Consensus pattern (19 bp):
TCATTGCATTCATGCATTA
Found at i:6826251 original size:6 final size:6
Alignment explanation
Indices: 6826242--6826291 Score: 64
Period size: 6 Copynumber: 8.0 Consensus size: 6
6826232 TTAAAAAATT
* *
6826242 AAAAAG AAAAAG AAAAAAAT AAAAAA AAAAAG AAAAAG AAAAAG AAAAAG
1 AAAAAG AAAAAG --AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
6826292 GAGAGGCCAA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
6 34 0.87
8 5 0.13
ACGTcount: A:0.86, C:0.00, G:0.12, T:0.02
Consensus pattern (6 bp):
AAAAAG
Found at i:6826259 original size:20 final size:19
Alignment explanation
Indices: 6826234--6826291 Score: 73
Period size: 18 Copynumber: 3.0 Consensus size: 19
6826224 TACTTCATTT
6826234 AAAAAATTAAAAAGAAAAAG
1 AAAAAA-TAAAAAGAAAAAG
*
6826254 AAAAAAATAAAAAAAAAAAG
1 -AAAAAATAAAAAGAAAAAG
*
6826274 -AAAAAGAAAAAGAAAAAG
1 AAAAAATAAAAAGAAAAAG
6826292 GAGAGGCCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
18 16 0.47
20 12 0.35
21 6 0.18
ACGTcount: A:0.84, C:0.00, G:0.10, T:0.05
Consensus pattern (19 bp):
AAAAAATAAAAAGAAAAAG
Found at i:6826272 original size:26 final size:27
Alignment explanation
Indices: 6826233--6826284 Score: 88
Period size: 26 Copynumber: 1.9 Consensus size: 27
6826223 ATACTTCATT
6826233 TAAAAAATTAAAAAGAAAAAGAAAAAAA
1 TAAAAAA-TAAAAAGAAAAAGAAAAAAA
6826261 TAAAAAA-AAAAAGAAAAAGAAAAA
1 TAAAAAATAAAAAGAAAAAGAAAAA
6826285 GAAAAAGGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 17 0.71
28 7 0.29
ACGTcount: A:0.85, C:0.00, G:0.08, T:0.08
Consensus pattern (27 bp):
TAAAAAATAAAAAGAAAAAGAAAAAAA
Found at i:6827943 original size:36 final size:36
Alignment explanation
Indices: 6827900--6828090 Score: 220
Period size: 36 Copynumber: 5.0 Consensus size: 36
6827890 GATAGCTTTA
6827900 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* *
6827936 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGAT-A-----AG---T
*
6827981 AGCTACACTTATCTGATCAAGTGAACAAGTGATAAGT
1 -GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* *
6828018 GTTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* * *
6828054 GCAATACTTATCTGATCAAGTGACAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
6828090 G
1 G
6828091 GTAGCTTAGC
Statistics
Matches: 134, Mismatches: 11, Indels: 20
0.81 0.07 0.12
Matches are distributed among these distances:
36 97 0.72
37 2 0.01
40 2 0.01
42 2 0.01
45 2 0.01
46 29 0.22
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (36 bp):
GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
Found at i:6828001 original size:82 final size:82
Alignment explanation
Indices: 6827864--6828054 Score: 319
Period size: 82 Copynumber: 2.3 Consensus size: 82
6827854 TTTGAGTACT
*
6827864 TCTGATCAAGAGATAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGAGAAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
6827929 GATAAGTGCTACACTTA
66 GATAAGTGCTACACTTA
* * *
6827946 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAACAAGT
1 TCTGATCAAGAGAAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
* *
6828011 GATAAGTGTTATACTTA
66 GATAAGTGCTACACTTA
*
6828028 TCTGATCAAGTGAAAAAGTGATAAGTG
1 TCTGATCAAGAGAAAAAGTGATAAGTG
6828055 CAATACTTAT
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
82 102 1.00
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (82 bp):
TCTGATCAAGAGAAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
GATAAGTGCTACACTTA
Found at i:6835600 original size:36 final size:36
Alignment explanation
Indices: 6835554--6835744 Score: 247
Period size: 36 Copynumber: 5.0 Consensus size: 36
6835544 GGTAGCTTTA
6835554 GCTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
* * *
6835590 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGT
1 GCTATACTTATCTGATCAAGTGAAAAAGTGATAA---GT
6835629 AGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 -GC--TA--T--ACTTATCTGATCAAGTGAAAAAGTGATAAGT
*
6835672 GTTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
*
6835708 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGT
1 GCTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
6835744 G
1 G
6835745 GTAGCTTAGC
Statistics
Matches: 136, Mismatches: 9, Indels: 20
0.82 0.05 0.12
Matches are distributed among these distances:
36 97 0.71
38 1 0.01
39 2 0.01
40 4 0.03
42 3 0.02
43 2 0.01
46 27 0.20
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (36 bp):
GCTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
Found at i:6835655 original size:82 final size:82
Alignment explanation
Indices: 6835518--6835708 Score: 328
Period size: 82 Copynumber: 2.3 Consensus size: 82
6835508 TTTGAGTACT
* *
6835518 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTATACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGAGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
6835583 GATAAGTGCTACACTTA
66 GATAAGTGCTACACTTA
*
6835600 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGAGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
* *
6835665 GATAAGTGTTATACTTA
66 GATAAGTGCTACACTTA
*
6835682 TCTGATCAAGTGAAAAAGTGATAAGTG
1 TCTGATCAAGAGAAAAAGTGATAAGTG
6835709 CTATACTTAT
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
82 103 1.00
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (82 bp):
TCTGATCAAGAGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
GATAAGTGCTACACTTA
Found at i:6838944 original size:143 final size:143
Alignment explanation
Indices: 6837733--6838929 Score: 1459
Period size: 143 Copynumber: 8.4 Consensus size: 143
6837723 GATTGAATTC
* * * * *
6837733 ATTATGACGAATCTTATCTTCCTGAAGTTGTAGTGGAGCAGATTAAAGCCACCAGCCTTATCTCC
1 ATTATGGCGGATCTTATCTTTCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCC
* * * * ** * *
6837798 CTAAAGTTGCAGCGTAGCACACAGAAGACAGTGAATCTTATTTCCCTAACGTTGCAGTGAAATAG
66 CTAAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAG
*
6837863 ATTAAACCTACAA
131 ATTAAAGCTACAA
* * * * *
6837876 ATTATGGCAGATCTTATCTTTCTGAAGTTACAGTGGAGAAGATTGAGGCCACCAACCTTATCTCC
1 ATTATGGCGGATCTTATCTTTCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCC
* * * * * * * *
6837941 CTGAAG-TGCAACGGAGCAGACTGAAGAAAGTGAATCTAATTTCCCTGGCGTTCCAGTAGAATAG
66 CTAAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAG
6838005 ATTAAAGCTACAA
131 ATTAAAGCTACAA
* * * *
6838018 ATTATGGCTGATCTTATC-TTCTTGAAGTTGCAATGGAGCAGATTAAAGCCACAAGCCTTATCTC
1 ATTATGGCGGATCTTATCTTTC-TGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTC
* * * * * * *
6838082 CCTGAAGTTGCAACGGAACAAATTGAAGACAGCGAATCTTATTTCCTTGGCCTTGCAGTGGAACA
65 CCTAAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACA
* *
6838147 GATGAAAACTACAA
130 GATTAAAGCTACAA
* *
6838161 ATTATGGTGGATCTTATCTTTCTGAAGTTGCAGTGGCA-CAGATTAAAGCCACCAGCCTTATCTC
1 ATTATGGCGGATCTTATCTTTCTGAAGTTGCAGTGG-AGCAGATTGAAGCCACCAGCCTTATCTC
* * * * * * *
6838225 TCTAAAGTTGTAGCGGAGCAGACTGAAGATAACAAATCTTATTTCACTGGCGTTGTAGTGGAACA
65 CCTAAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACA
*
6838290 GATTAAAGCTAGAA
130 GATTAAAGCTACAA
* * * *
6838304 ATTATGGTGGATCTTATCTTCCTGAAGTTGCAGTGGAGTAGATTGAAGCCACTAGCCTTATCTCC
1 ATTATGGCGGATCTTATCTTTCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCC
* * * * ** * *
6838369 TTGAAGTTGCAGCGAAGCAGATTGAAGACAGAAAATCTTATTTTCCTGGCGTTGTAGTGGAACAG
66 CTAAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAG
*
6838434 ATTAAAGCTAAAA
131 ATTAAAGCTACAA
* * * *
6838447 ATTATGGCTGATCTTATCTTCCTGAAGTTGTAGTGGAGTAGATTGAAGCCACCAGCCTTATCTCC
1 ATTATGGCGGATCTTATCTTTCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCC
* * *
6838512 CTAAAGTTGCAGCGGAGTAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCATTGTAACAG
66 CTAAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAG
6838577 ATTAAAGCTACAA
131 ATTAAAGCTACAA
* * * *
6838590 ATTATGGCGGATTTTATCTTTCTGAATTTGCAGTGAAGCAGATTGAAGCCACCAGCCTTATCTTC
1 ATTATGGCGGATCTTATCTTTCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCC
* * * * * * *
6838655 CTGAAGTTGCAGCGGAACATACTAAAGACAACGAATCTTATTTCCCTGGTGTTTCAGTGGAACAG
66 CTAAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAG
* *
6838720 ATGAAAACTACAA
131 ATTAAAGCTACAA
** * * *
6838733 ATTATGGCAAATCTTATC-TTCTTAAAGTTACAGTGGAGCAGATTGAAGCCACTAGCCTTATCTC
1 ATTATGGCGGATCTTATCTTTC-TGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTC
* * * **
6838797 CCTAAAGTTGCAGCGGAGCAAACTTAAGACAGCGAATCTTATTTCCCTAGCGTCCCAGTGGAACA
65 CCTAAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACA
*
6838862 TG-TTAAAGCTTCAA
130 -GATTAAAGCTACAA
* *
6838876 ATTATGGCGGATCTTATCTTTCTGAAGTTGTAGTGGAGCAGATTGATGCCACCA
1 ATTATGGCGGATCTTATCTTTCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCA
6838930 ATCCTATCTT
Statistics
Matches: 901, Mismatches: 145, Indels: 16
0.85 0.14 0.02
Matches are distributed among these distances:
141 3 0.00
142 122 0.14
143 768 0.85
144 8 0.01
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29
Consensus pattern (143 bp):
ATTATGGCGGATCTTATCTTTCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCC
CTAAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAG
ATTAAAGCTACAA
Found at i:6839513 original size:18 final size:18
Alignment explanation
Indices: 6839490--6839533 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
6839480 ACACCAGAGT
6839490 AATCAAAAAAAAGAGAAA
1 AATCAAAAAAAAGAGAAA
* **
6839508 AATCAAAGAAAAGTTAAA
1 AATCAAAAAAAAGAGAAA
6839526 AAT-AAAAA
1 AATCAAAAA
6839534 GAAAAAAGGT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.75, C:0.05, G:0.09, T:0.11
Consensus pattern (18 bp):
AATCAAAAAAAAGAGAAA
Found at i:6839609 original size:19 final size:21
Alignment explanation
Indices: 6839587--6839625 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
6839577 TTTTTACTCT
6839587 TCTATATTT-TT-TCTTTTTC
1 TCTATATTTGTTATCTTTTTC
*
6839606 TCTATTTTTGTTATCTTTTT
1 TCTATATTTGTTATCTTTTT
6839626 TCCTTATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 2 0.12
21 7 0.41
ACGTcount: A:0.10, C:0.13, G:0.03, T:0.74
Consensus pattern (21 bp):
TCTATATTTGTTATCTTTTTC
Found at i:6840401 original size:27 final size:27
Alignment explanation
Indices: 6840370--6840475 Score: 119
Period size: 27 Copynumber: 3.9 Consensus size: 27
6840360 GTTTATTTAT
* *
6840370 TTATTTTAAAATCTTTTACTATATTAC
1 TTATTTTAAACTTTTTTACTATATTAC
6840397 TTATTTTAAACTTTTTTA-T-TATTAC
1 TTATTTTAAACTTTTTTACTATATTAC
* *
6840422 TTATTTTAAGCTTTTTTTCATATATTA-
1 TTATTTTAAACTTTTTTAC-TATATTAC
*
6840449 TTATTTTAAACTATTTTATACTTTATT
1 TTATTTTAAACT-TTTT-TACTATATT
6840476 CATTTTAAAT
Statistics
Matches: 67, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
25 22 0.33
26 1 0.01
27 28 0.42
28 14 0.21
29 2 0.03
ACGTcount: A:0.29, C:0.08, G:0.01, T:0.61
Consensus pattern (27 bp):
TTATTTTAAACTTTTTTACTATATTAC
Found at i:6840449 original size:24 final size:25
Alignment explanation
Indices: 6840354--6840493 Score: 85
Period size: 25 Copynumber: 5.5 Consensus size: 25
6840344 ACCTTTTTGC
* *
6840354 AAACTTGTTTAT--TTATTTATTTT
1 AAACTTTTTTATCATTACTTATTTT
*
6840377 AAAATCTTTTACTAT-ATTACTTATTTT
1 -AAA-CTTTT-TTATCATTACTTATTTT
*
6840404 AAACTTTTTTATTATTACTTATTTT
1 AAACTTTTTTATCATTACTTATTTT
* *
6840429 AAGCTTTTTT-TCATATATTATTATTTT
1 AAACTTTTTTATCAT-TA--CTTATTTT
* *
6840456 AAACTATTTTATACTTTA-TTCATTTT
1 AAACTTTTTTAT-CATTACTT-ATTTT
6840482 AAA-TTGTTTTAT
1 AAACTT-TTTTAT
6840494 ATGGTATTCA
Statistics
Matches: 94, Mismatches: 11, Indels: 20
0.75 0.09 0.16
Matches are distributed among these distances:
24 9 0.10
25 35 0.37
26 20 0.21
27 25 0.27
28 3 0.03
29 2 0.02
ACGTcount: A:0.29, C:0.08, G:0.02, T:0.61
Consensus pattern (25 bp):
AAACTTTTTTATCATTACTTATTTT
Found at i:6840480 original size:26 final size:25
Alignment explanation
Indices: 6840370--6840699 Score: 169
Period size: 26 Copynumber: 13.0 Consensus size: 25
6840360 GTTTATTTAT
* *
6840370 TTATTTTAAAATCTTTTACTATATTA
1 TTATTTTAAATTATTTTA-TATATTA
6840396 CTTATTTTAAACTT-TTTTAT-TATTA
1 -TTATTTTAAA-TTATTTTATATATTA
* *
6840421 CTTATTTTAAGCTTTTTTTCATATATTA
1 -TTATTTTAA-ATTATTTT-ATATATTA
*
6840449 TTATTTTAAACTATTTTATACT-TTA
1 TTATTTTAAATTATTTTATA-TATTA
* **
6840474 TTCATTTTAAATTGTTTTATATGGTA
1 TT-ATTTTAAATTATTTTATATATTA
* * *
6840500 TTCATTTCAAATTGTTTTAT-TGTGTA
1 TT-ATTTTAAATTATTTTATATAT-TA
* * *
6840526 TTATATTAAACTATTATATATATTA
1 TTATTTTAAATTATTTTATATATTA
*
6840551 TTTATTTTAAATTA-CTT-TATA-TA
1 -TTATTTTAAATTATTTTATATATTA
* * * *
6840574 TT-TTTTGAACTGTTTTATATTTTA
1 TTATTTTAAATTATTTTATATATTA
** * **
6840598 TTTATGATAAGTT-TTTTCATATGGT-
1 -TTATTTTAAATTATTTT-ATATATTA
* ** *
6840623 TTATTTTCAACCATTTTGTATATTA
1 TTATTTTAAATTATTTTATATATTA
6840648 TTTATTTTAAATTTATTTTATATATTA
1 -TTATTTTAAA-TTATTTTATATATTA
*
6840675 TTCATTTTAAACTTTTTTTAT-TATT
1 TT-ATTTTAAA-TTATTTTATATATT
6840700 TTCTTTAAAT
Statistics
Matches: 234, Mismatches: 47, Indels: 45
0.72 0.14 0.14
Matches are distributed among these distances:
21 7 0.03
22 4 0.02
23 5 0.02
24 16 0.07
25 53 0.23
26 89 0.38
27 54 0.23
28 6 0.03
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.60
Consensus pattern (25 bp):
TTATTTTAAATTATTTTATATATTA
Found at i:6840665 original size:27 final size:28
Alignment explanation
Indices: 6840635--6840699 Score: 91
Period size: 27 Copynumber: 2.4 Consensus size: 28
6840625 ATTTTCAACC
* *
6840635 ATTTTGTATATTATTTATTTTAAA-TTT
1 ATTTTATATATTATTCATTTTAAACTTT
6840662 ATTTTATATATTATTCATTTTAAACTTT
1 ATTTTATATATTATTCATTTTAAACTTT
6840690 -TTTTAT-TATT
1 ATTTTATATATT
6840700 TTCTTTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
26 4 0.11
27 28 0.80
28 3 0.09
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.66
Consensus pattern (28 bp):
ATTTTATATATTATTCATTTTAAACTTT
Found at i:6840706 original size:23 final size:23
Alignment explanation
Indices: 6840643--6840710 Score: 68
Period size: 27 Copynumber: 2.8 Consensus size: 23
6840633 CCATTTTGTA
6840643 TATTATTTAT-TTTAAATTTATTT
1 TATTATTT-TCTTTAAATTTATTT
6840666 TATATATTATTCATTTTAAACTTT-TTT
1 TAT-TATT-TTC--TTTAAA-TTTATTT
6840693 TATTATTTTCTTTAAATT
1 TATTATTTTCTTTAAATT
6840711 GCTTCATTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
22 2 0.05
23 9 0.23
24 5 0.13
25 4 0.10
26 4 0.10
27 12 0.31
28 3 0.08
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.66
Consensus pattern (23 bp):
TATTATTTTCTTTAAATTTATTT
Found at i:6840783 original size:49 final size:47
Alignment explanation
Indices: 6840644--6840783 Score: 122
Period size: 50 Copynumber: 2.8 Consensus size: 47
6840634 CATTTTGTAT
* * **
6840644 ATTATTTATTTTAAATT-TATTTTATATATTATTCATTTTAAACTTTTTTT
1 ATTATTTACTTTAAATTGT-TTTT-TACA-TATT-ATTTTAAACTTTTTAG
* *
6840694 ATTATTTTCTTTAAATTGCTTCATTTATCAT-TTATTTTAAACCTTTTTAG
1 ATTATTTACTTTAAATTG-TT-TTTTA-CATATTATTTTAAA-CTTTTTAG
*
6840744 ATTATTTACTTTAAATTGTTTTTTACATATTGATATTAAA
1 ATTATTTACTTTAAATTGTTTTTTACATATT-ATTTTAAA
6840784 GTGACATGTG
Statistics
Matches: 74, Mismatches: 9, Indels: 15
0.76 0.09 0.15
Matches are distributed among these distances:
47 3 0.04
48 6 0.08
49 17 0.23
50 40 0.54
51 4 0.05
52 4 0.05
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (47 bp):
ATTATTTACTTTAAATTGTTTTTTACATATTATTTTAAACTTTTTAG
Found at i:6843134 original size:147 final size:147
Alignment explanation
Indices: 6842860--6843134 Score: 424
Period size: 147 Copynumber: 1.9 Consensus size: 147
6842850 AACGAGAATG
* * *
6842860 TGGTGGAAAAAATAAAGGAATAGAAGGAACTGCAGTTGGGATTGTGGGGACTGAGGGAATGCTTG
1 TGGTGGAAAAAAGAAAGAAATAGAAGGAACTGCAATTGGGATTGTGGGGACTGAGGGAATGCTTG
* * ***
6842925 GCAGAGGGGGTAGTCTTCTTGCCAATGTGGTAGGAAGTGGAGGAAGCGCCCCAGGGTTTGGGAGA
66 GCAGAGGGGGCAGTCCTCTTGCCAATGTGGTAGGAAGTGGAGGAAGCGCCCCAGGCAATGGGAGA
6842990 TTAGAGACAGATGGCAA
131 TTAGAGACAGATGGCAA
* * *
6843007 TGGTGGAAAAGAGAAAGAAATAGAGGGAATTGCAATTGGGATTGTGGGGACTGAGGGAATGCTTG
1 TGGTGGAAAAAAGAAAGAAATAGAAGGAACTGCAATTGGGATTGTGGGGACTGAGGGAATGCTTG
* * *
6843072 GTAGAGGGGGCAGTCCTCTTGGCAATGTGGTAGGAAGTGGAGGAAGTGCCCCAGGCAATGGGA
66 GCAGAGGGGGCAGTCCTCTTGCCAATGTGGTAGGAAGTGGAGGAAGCGCCCCAGGCAATGGGA
6843135 ATGATGGTCG
Statistics
Matches: 114, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
147 114 1.00
ACGTcount: A:0.29, C:0.11, G:0.40, T:0.20
Consensus pattern (147 bp):
TGGTGGAAAAAAGAAAGAAATAGAAGGAACTGCAATTGGGATTGTGGGGACTGAGGGAATGCTTG
GCAGAGGGGGCAGTCCTCTTGCCAATGTGGTAGGAAGTGGAGGAAGCGCCCCAGGCAATGGGAGA
TTAGAGACAGATGGCAA
Found at i:6843577 original size:20 final size:20
Alignment explanation
Indices: 6843552--6843593 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
6843542 GGAACTATCA
*
6843552 TAGAATTAGGGGATTACAAC
1 TAGAATTAGGGAATTACAAC
6843572 TAGAATTAGGGAATTACAAC
1 TAGAATTAGGGAATTACAAC
6843592 TA
1 TA
6843594 ATTATAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.43, C:0.10, G:0.21, T:0.26
Consensus pattern (20 bp):
TAGAATTAGGGAATTACAAC
Found at i:6850041 original size:43 final size:43
Alignment explanation
Indices: 6849993--6850094 Score: 102
Period size: 43 Copynumber: 2.4 Consensus size: 43
6849983 AGCTCGTACA
* **
6849993 ATGCCAACGTCCCAGGC-GTGGTCTTACAT-GTATTCACAAATCG
1 ATGCCAACGTCCCAGACAG-GGTCTTAC-TCGTAAACACAAATCG
* * *
6850036 ATGCC-ACAGTCCTAGACAGGGTCTTACTCGTAAACACAAGTTG
1 ATGCCAAC-GTCCCAGACAGGGTCTTACTCGTAAACACAAATCG
6850079 ATGCCAACGTCCCAGA
1 ATGCCAACGTCCCAGA
6850095 TTTGGCCTTA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
42 3 0.06
43 42 0.88
44 3 0.06
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACTCGTAAACACAAATCG
Found at i:6861055 original size:27 final size:26
Alignment explanation
Indices: 6861021--6861084 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 26
6861011 TAAATTTATA
*
6861021 AATTTTA-TCATTATAAATATGATTTT
1 AATTTTATTCAGTATAAA-ATGATTTT
*
6861047 AATTCTTATTTAGTATAAAATGATTTT
1 AATT-TTATTCAGTATAAAATGATTTT
6861074 AAGTATTTATT
1 AA-T-TTTATT
6861085 TTTAATTTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
26 4 0.12
27 13 0.41
28 14 0.44
29 1 0.03
ACGTcount: A:0.38, C:0.03, G:0.06, T:0.53
Consensus pattern (26 bp):
AATTTTATTCAGTATAAAATGATTTT
Found at i:6873574 original size:12 final size:12
Alignment explanation
Indices: 6873557--6873616 Score: 54
Period size: 12 Copynumber: 4.9 Consensus size: 12
6873547 ACTTAATCAC
6873557 TTTAATATTAAA
1 TTTAATATTAAA
6873569 TTTAATA-TAATA
1 TTTAATATTAA-A
*
6873581 TTT-ATCTGATAAA
1 TTTAATAT--TAAA
6873594 TATT-ATATTAAA
1 T-TTAATATTAAA
6873606 TTTAATATTAA
1 TTTAATATTAA
6873617 GTCTTATTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
11 7 0.17
12 23 0.57
13 2 0.05
14 8 0.20
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:6877433 original size:147 final size:147
Alignment explanation
Indices: 6877159--6877433 Score: 415
Period size: 147 Copynumber: 1.9 Consensus size: 147
6877149 AAGGAGAAGG
*
6877159 TGGTGGAGAAAAGAAAGGAATAGAGGGAACTGCAATTGGGATTGTGGGGACTAAGGGAATGCTTG
1 TGGTGGAGAAAAGAAAGGAATAGAGGGAACTGCAATTGGGATTGTGGAGACTAAGGGAATGCTTG
* **
6877224 GCAGAGGGGCCAGTCCTCTTGGAAATGTGGTAGGAAGTGGAGGAAGCACCCCAGGATTTGGGAGA
66 GCAGAGGGGCCAGTCCTATTGGAAATGTGGTAGGAAGTGGAGGAAGCACCCCAGGACATGGGAGA
6877289 TTAGGGAAAGATGGCAA
131 TTAGGGAAAGATGGCAA
* * * * *
6877306 TGGTGGAGAAGAGAAAGGAATAGGGGGAATTGCAGTTGGGATTGTGGAGACTGAGGGAATGCTTG
1 TGGTGGAGAAAAGAAAGGAATAGAGGGAACTGCAATTGGGATTGTGGAGACTAAGGGAATGCTTG
** * * * *
6877371 GCAGAGGGGGTAGTCCTATTGGCAATGTGGTAGGAAGTGGAGGAAGCGCCCCGGGCCATGGGA
66 GCAGAGGGGCCAGTCCTATTGGAAATGTGGTAGGAAGTGGAGGAAGCACCCCAGGACATGGGA
6877434 ATGATGGTCG
Statistics
Matches: 113, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
147 113 1.00
ACGTcount: A:0.29, C:0.11, G:0.42, T:0.19
Consensus pattern (147 bp):
TGGTGGAGAAAAGAAAGGAATAGAGGGAACTGCAATTGGGATTGTGGAGACTAAGGGAATGCTTG
GCAGAGGGGCCAGTCCTATTGGAAATGTGGTAGGAAGTGGAGGAAGCACCCCAGGACATGGGAGA
TTAGGGAAAGATGGCAA
Found at i:6887858 original size:24 final size:23
Alignment explanation
Indices: 6887789--6887859 Score: 72
Period size: 22 Copynumber: 3.1 Consensus size: 23
6887779 TGCATATTAC
* *
6887789 TACATGTAGGGTTCGCATAAATA
1 TACATATAGGGTTCACATAAATA
**
6887812 -ACATATAGGGTTCACATGCATA
1 TACATATAGGGTTCACATAAATA
* *
6887834 TTCATCCTAGGGTTCACATAAATA
1 TACAT-ATAGGGTTCACATAAATA
6887858 TA
1 TA
6887860 TCAAAAGATC
Statistics
Matches: 37, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
22 18 0.49
23 3 0.08
24 16 0.43
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (23 bp):
TACATATAGGGTTCACATAAATA
Found at i:6889781 original size:22 final size:23
Alignment explanation
Indices: 6889735--6889781 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
6889725 ATTAATTTCT
**
6889735 ATAATAGATGTTTTAATTCTTTA
1 ATAATAGATGTTTTAATTCAATA
*
6889758 ATAATAG-TGTTTTATTTCAATA
1 ATAATAGATGTTTTAATTCAATA
6889780 AT
1 AT
6889782 TTCACCTAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.36, C:0.04, G:0.09, T:0.51
Consensus pattern (23 bp):
ATAATAGATGTTTTAATTCAATA
Found at i:6890014 original size:60 final size:64
Alignment explanation
Indices: 6889940--6890063 Score: 166
Period size: 65 Copynumber: 2.0 Consensus size: 64
6889930 TGATCAAATC
* * *
6889940 AATTAATCAAATCAACCACTACGA-T-C-A-GAGTTGTCAACTAATTGTCAAATAAGATATATT
1 AATTAATCAAATCAACCACTACAATTACAATCAGTTCTCAACTAATTGTCAAATAAGATATATT
* *
6890000 AATTAATCATATCAACCACTACAATTAACAATCAGTTCTCAACTAATTGTCAAGTAAGATATAT
1 AATTAATCAAATCAACCACTACAATT-ACAATCAGTTCTCAACTAATTGTCAAATAAGATATAT
6890064 ATATATATAT
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
60 22 0.41
61 1 0.02
63 1 0.02
64 1 0.02
65 29 0.54
ACGTcount: A:0.44, C:0.18, G:0.08, T:0.31
Consensus pattern (64 bp):
AATTAATCAAATCAACCACTACAATTACAATCAGTTCTCAACTAATTGTCAAATAAGATATATT
Found at i:6890386 original size:14 final size:15
Alignment explanation
Indices: 6890367--6890398 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
6890357 ACTGTGTCAC
6890367 ATATGA-TTTTTTTA
1 ATATGATTTTTTTTA
6890381 ATATGATTTTTTTTA
1 ATATGATTTTTTTTA
6890396 ATA
1 ATA
6890399 GCATAACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (15 bp):
ATATGATTTTTTTTA
Found at i:6892519 original size:63 final size:63
Alignment explanation
Indices: 6892443--6892572 Score: 163
Period size: 63 Copynumber: 2.1 Consensus size: 63
6892433 GTGGTAGGCT
* * * * *
6892443 GTGTAACTTACTGTTTGGGAAA-TAGAGTCACACGAGCCGGAGGCAAGGGCATGTGTCCAAGCC
1 GTGTAACTCACTGTTT-GGAAATTAGAGTCACACAAGCCAGAGACAAGGGCATGTGTCCAAGCA
* * * *
6892506 GTGTAACTCACTGTTTTGAAATTAGATTCATACAAGCCAGAGACACGGGCATGTGTCCAAGCA
1 GTGTAACTCACTGTTTGGAAATTAGAGTCACACAAGCCAGAGACAAGGGCATGTGTCCAAGCA
6892569 GTGT
1 GTGT
6892573 GAGAGAATTT
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
62 4 0.07
63 53 0.93
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (63 bp):
GTGTAACTCACTGTTTGGAAATTAGAGTCACACAAGCCAGAGACAAGGGCATGTGTCCAAGCA
Found at i:6895432 original size:25 final size:23
Alignment explanation
Indices: 6895378--6895420 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
6895368 AATGCTTGAG
6895378 TTATATA-GTTTTGGTCATGATA
1 TTATATATGTTTTGGTCATGATA
6895400 TATATATATGTTTTGG-CATGA
1 T-TATATATGTTTTGGTCATGA
6895421 AGTAATTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 1 0.05
23 11 0.58
24 7 0.37
ACGTcount: A:0.28, C:0.05, G:0.19, T:0.49
Consensus pattern (23 bp):
TTATATATGTTTTGGTCATGATA
Found at i:6897260 original size:14 final size:14
Alignment explanation
Indices: 6897241--6897267 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
6897231 ATTTCATTCC
6897241 ACATATATATATAT
1 ACATATATATATAT
6897255 ACATATATATATA
1 ACATATATATATA
6897268 AACACATAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (14 bp):
ACATATATATATAT
Found at i:6897617 original size:21 final size:21
Alignment explanation
Indices: 6897585--6897674 Score: 65
Period size: 21 Copynumber: 4.1 Consensus size: 21
6897575 ATTTTCACAC
6897585 CAAAATTTGGACAGCATATATA
1 CAAAA-TTGGACAGCATATATA
* *
6897607 CAAAATTGGACTGCATTTATACA
1 CAAAATTGGACAGCA--TATATA
*
6897630 TCAAAAATT-GACAGCATAAATA
1 -C-AAAATTGGACAGCATATATA
* * * *
6897652 TATAATTGGACTGCATTTATA
1 CAAAATTGGACAGCATATATA
6897673 CA
1 CA
6897675 TCAAAAATTG
Statistics
Matches: 52, Mismatches: 11, Indels: 11
0.70 0.15 0.15
Matches are distributed among these distances:
20 5 0.10
21 20 0.38
22 9 0.17
23 5 0.10
24 7 0.13
25 6 0.12
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.30
Consensus pattern (21 bp):
CAAAATTGGACAGCATATATA
Found at i:6897653 original size:47 final size:47
Alignment explanation
Indices: 6897585--6898118 Score: 828
Period size: 47 Copynumber: 11.5 Consensus size: 47
6897575 ATTTTCACAC
* * *
6897585 CAAAATTTGGACAGCATAT--ATACAAAATTGGACTGCATTTATACAT
1 CAAAAATT-GACAGCATATACATATATAATTGGACTGCATTTATACAT
6897631 CAAAAATTGACAGCATA-A-ATATATAATTGGACTGCATTTATACAT
1 CAAAAATTGACAGCATATACATATATAATTGGACTGCATTTATACAT
* *
6897676 CAAAAATTGACAGCATATACATATATATTTGGACTGCATTTGTACAT
1 CAAAAATTGACAGCATATACATATATAATTGGACTGCATTTATACAT
*
6897723 CAAAATTTGACAGCATATACATATATAATTGGACTGCATTTATACAT
1 CAAAAATTGACAGCATATACATATATAATTGGACTGCATTTATACAT
* *
6897770 CAAAAATTGACAGCATATACATATATATTTGGACTGCATTTGTACAT
1 CAAAAATTGACAGCATATACATATATAATTGGACTGCATTTATACAT
* **
6897817 CAAAATTTGACAGCATATACATATATAATTGGACTGCATTTATATGT
1 CAAAAATTGACAGCATATACATATATAATTGGACTGCATTTATACAT
* *
6897864 CAAAAATTGACAGCATATACAAATATAATTGGACTGC-CTTATACAT
1 CAAAAATTGACAGCATATACATATATAATTGGACTGCATTTATACAT
6897910 CAAAAATTGACAGCATATACATATATAATTGGACTGCATTTATACAT
1 CAAAAATTGACAGCATATACATATATAATTGGACTGCATTTATACAT
*
6897957 CAAAAATTGACAGCATATACATATATAATTGGACTGCATTTATACGT
1 CAAAAATTGACAGCATATACATATATAATTGGACTGCATTTATACAT
* * *
6898004 AAAAAATTGACAGCATATACATATATAATTGGATTGC-CTTATACAT
1 CAAAAATTGACAGCATATACATATATAATTGGACTGCATTTATACAT
* *
6898050 AAAAAATTGACAGCATATACATATATAATTGGACTGCATTTGTACAT
1 CAAAAATTGACAGCATATACATATATAATTGGACTGCATTTATACAT
**
6898097 CAAATTTTGACAGCATATACAT
1 CAAAAATTGACAGCATATACAT
6898119 TCATTTACTC
Statistics
Matches: 449, Mismatches: 34, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
45 51 0.11
46 93 0.21
47 305 0.68
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (47 bp):
CAAAAATTGACAGCATATACATATATAATTGGACTGCATTTATACAT
Found at i:6897956 original size:140 final size:141
Alignment explanation
Indices: 6897585--6898118 Score: 837
Period size: 140 Copynumber: 3.8 Consensus size: 141
6897575 ATTTTCACAC
* * * *
6897585 CAAAATTTGGACAGCATAT--ATACAAAATTGGACTGCATTTATACATCAAAAATTGACAGCATA
1 CAAAAATT-GACAGCATATACATATATAATTGGACTGCACTTATACATCAAAAATTGACAGCATA
*
6897648 -A-ATATATAATTGGACTGCATTTATACATCAAAAATTGACAGCATATACATATATATTTGGACT
65 TACATATATAATTGGACTGCATTTATACATCAAAAATTGACAGCATATACATATATAATTGGACT
* *
6897711 GCATTTGTACAT
130 GCATTTATACGT
* *
6897723 CAAAATTTGACAGCATATACATATATAATTGGACTGCATTTATACATCAAAAATTGACAGCATAT
1 CAAAAATTGACAGCATATACATATATAATTGGACTGCACTTATACATCAAAAATTGACAGCATAT
* * *
6897788 ACATATATATTTGGACTGCATTTGTACATCAAAATTTGACAGCATATACATATATAATTGGACTG
66 ACATATATAATTGGACTGCATTTATACATCAAAAATTGACAGCATATACATATATAATTGGACTG
*
6897853 CATTTATATGT
131 CATTTATACGT
*
6897864 CAAAAATTGACAGCATATACAAATATAATTGGACTGC-CTTATACATCAAAAATTGACAGCATAT
1 CAAAAATTGACAGCATATACATATATAATTGGACTGCACTTATACATCAAAAATTGACAGCATAT
6897928 ACATATATAATTGGACTGCATTTATACATCAAAAATTGACAGCATATACATATATAATTGGACTG
66 ACATATATAATTGGACTGCATTTATACATCAAAAATTGACAGCATATACATATATAATTGGACTG
6897993 CATTTATACGT
131 CATTTATACGT
* * *
6898004 AAAAAATTGACAGCATATACATATATAATTGGATTGC-CTTATACATAAAAAATTGACAGCATAT
1 CAAAAATTGACAGCATATACATATATAATTGGACTGCACTTATACATCAAAAATTGACAGCATAT
* **
6898068 ACATATATAATTGGACTGCATTTGTACATCAAATTTTGACAGCATATACAT
66 ACATATATAATTGGACTGCATTTATACATCAAAAATTGACAGCATATACAT
6898119 TCATTTACTC
Statistics
Matches: 369, Mismatches: 23, Indels: 6
0.93 0.06 0.02
Matches are distributed among these distances:
137 10 0.03
138 8 0.02
139 42 0.11
140 207 0.56
141 102 0.28
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (141 bp):
CAAAAATTGACAGCATATACATATATAATTGGACTGCACTTATACATCAAAAATTGACAGCATAT
ACATATATAATTGGACTGCATTTATACATCAAAAATTGACAGCATATACATATATAATTGGACTG
CATTTATACGT
Found at i:6898395 original size:14 final size:15
Alignment explanation
Indices: 6898371--6898405 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
6898361 TATATACATT
6898371 ACCATATAAATACTA
1 ACCATATAAATACTA
6898386 ACCATA-AAATACTA
1 ACCATATAAATACTA
6898400 ATCCAT
1 A-CCAT
6898406 GATTAAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (15 bp):
ACCATATAAATACTA
Found at i:6899145 original size:43 final size:43
Alignment explanation
Indices: 6899063--6899180 Score: 123
Period size: 43 Copynumber: 2.7 Consensus size: 43
6899053 TACAATACCA
* *** * * *
6899063 ACGTCCCAGACGTGGTCTTACATGTAATCACATACCGATGCC-
1 ACGTCCCAGAAGTGGTCTTACACAAAAACACAAATCGATGCCG
6899105 ACTGTCCCAGACAG-GGTCTTACACAAAAACACAAATCGATGCCG
1 AC-GTCCCAGA-AGTGGTCTTACACAAAAACACAAATCGATGCCG
* *
6899149 ACGTCCCAGATGTGGTCTTACACGAAAACACA
1 ACGTCCCAGAAGTGGTCTTACACAAAAACACA
6899181 TATTGGAGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
42 3 0.05
43 57 0.90
44 3 0.05
ACGTcount: A:0.32, C:0.30, G:0.19, T:0.19
Consensus pattern (43 bp):
ACGTCCCAGAAGTGGTCTTACACAAAAACACAAATCGATGCCG
Found at i:6903605 original size:15 final size:15
Alignment explanation
Indices: 6903585--6903619 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
6903575 CCGTGTGGCT
6903585 CACACGGCCTGGCCA
1 CACACGGCCTGGCCA
6903600 CACACGGCCTGGCCA
1 CACACGGCCTGGCCA
6903615 CACAC
1 CACAC
6903620 CTGTGTGCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.23, C:0.49, G:0.23, T:0.06
Consensus pattern (15 bp):
CACACGGCCTGGCCA
Found at i:6903616 original size:13 final size:14
Alignment explanation
Indices: 6903580--6903619 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
6903570 CATGGCCGTG
*
6903580 TGGCTCACACGGCC
1 TGGCACACACGGCC
6903594 TGGCCACACACGGCC
1 TGG-CACACACGGCC
6903609 TGGCCACACAC
1 TGG-CACACAC
6903620 CTGTGTGCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 3 0.12
15 21 0.88
ACGTcount: A:0.20, C:0.45, G:0.25, T:0.10
Consensus pattern (14 bp):
TGGCACACACGGCC
Found at i:6903900 original size:17 final size:17
Alignment explanation
Indices: 6903848--6903900 Score: 61
Period size: 19 Copynumber: 3.0 Consensus size: 17
6903838 TATGGAAACA
* *
6903848 TAATCTTTGAGGATATG
1 TAATCTTAGAAGATATG
*
6903865 CAATCTTAGATATGATATG
1 TAATCTTAGA-A-GATATG
6903884 TAATCTTAGAAGATATG
1 TAATCTTAGAAGATATG
6903901 ATTTTGTAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
17 14 0.47
18 1 0.03
19 15 0.50
ACGTcount: A:0.36, C:0.08, G:0.19, T:0.38
Consensus pattern (17 bp):
TAATCTTAGAAGATATG
Found at i:6903900 original size:22 final size:23
Alignment explanation
Indices: 6903872--6903916 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
6903862 ATGCAATCTT
6903872 AGATATGA-TATGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
*
6903894 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
6903917 GATTTAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.40
Consensus pattern (23 bp):
AGATATGATTATGTAATCTTAGA
Found at i:6903926 original size:22 final size:23
Alignment explanation
Indices: 6903882--6903926 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
6903872 AGATATGATA
*
6903882 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
6903905 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
6903927 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:6904128 original size:19 final size:21
Alignment explanation
Indices: 6904104--6904142 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
6904094 TACTATTTTC
*
6904104 TTTTTTTCTT-TTT-CGATTA
1 TTTTTTACTTATTTACGATTA
6904123 TTTTTTACTTATTTACGATT
1 TTTTTTACTTATTTACGATT
6904143 TTAAAAAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTTACTTATTTACGATTA
Found at i:6941901 original size:31 final size:31
Alignment explanation
Indices: 6941825--6941903 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
6941815 AAAATCGGCT
*
6941825 CACACGCCCATGTGGTCTACCTGTGTGGGCC
1 CACACGCCCATGTGGTCTACCCGTGTGGGCC
*
6941856 CACACACCCATGTGGTCTACCCGTGTGGGCC
1 CACACGCCCATGTGGTCTACCCGTGTGGGCC
**
6941887 CACACGCCTGTGTGGTC
1 CACACGCCCATGTGGTC
6941904 CACTTGGCCC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.14, C:0.37, G:0.28, T:0.22
Consensus pattern (31 bp):
CACACGCCCATGTGGTCTACCCGTGTGGGCC
Found at i:6951861 original size:44 final size:44
Alignment explanation
Indices: 6951802--6953307 Score: 452
Period size: 44 Copynumber: 33.8 Consensus size: 44
6951792 TGGTGTCTTC
* *
6951802 AATCCGCTCCACTGCAACTTCAGGGAGATAGGATT-ATTGTCTGT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAATT-TCTGT
* *
6951846 AATCTGCTCCTCTGCAACTTCAGGGAGATAAGATT--TTCCATG-
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAATTTC-TGT
* * * *
6951888 -ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTATAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-T-AATT-T--CTGT
* * * * ** *
6951938 AATCTGTTCCACTGTAGCTTCAGGGAAATAAGATTCGCTATCAT-T
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-AATTTC-TGT
* * *
6951983 AGTCTGCTCCACTGCAACTTCAAGGAGATAAAACTTAATTTC---
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTAATTTCTGT
* * * *
6952025 AATCTACTCTACTGCAACTTCAGGGAGATAGGATT-ATTGGCTGT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAATT-TCTGT
* **
6952069 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATT--TGCCATG-
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAATTTC-TGT
* * * *
6952111 -ATCTACTCTACTGCAACTTCAGAGAGATAAGATATGTAATTTATAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAG--AT-TAA-TT-T--CTGT
* * * *
6952161 AATCTGCTCCACTGCAACTTTAGGGAAATAAGATTCACTATCT-T
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-AATTTCTGT
* * * **
6952205 CAGTCTGCTCCACTGCAACTTCCGGGAGATAAGGTT--TGCCATG-
1 -AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAATTTC-TGT
** * *
6952248 -ATCTGCTTTACTGCAACTTCAGAGG-GATAAGACCTGTGATTTATAGCTTT
1 AATCTGCTCCACTGCAACTTCAG-GGAGATAAGA--T-T-AATT-T--CTGT
* * * **
6952298 AATCTGTTCCAAC-GCAGCTTCAGGGAAATAAGATTCGTTATCAT-T
1 AATCTGCTCC-ACTGCAACTTCAGGGAGATAAGATTAATT-TC-TGT
* * * * * *
6952343 AGTCTACTCCACTGCAACTTTAGGAAGATAAGACTTCACTTC---
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTAATTTCTGT
* * * * * *
6952385 AATCCGCTCCACTGCAACTTAAGGGTGATAGGATT-ATTGGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAATT-TCTGT
* **
6952429 AATCTGCTCCACTACAACTTCAGGGAGATAAGATT--TGCCATG-
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAATTTC-TGT
** ** * * *
6952471 -ATCCACTTTACTGCAACTTCAGAGAGATAAGATCTGTGATTTATAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-T-AATT-T--CTGT
* * * ** * *
6952521 AATCTGTTCCACTGCAACTTTAGGGAAATAAGATTCGCTATCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-AATTTCTGT
* * * * * ** *
6952566 AGTATGCTCTACTGCATCTTCAGGGAGATAAGACTGGTGTCT-T
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAATTTCTGT
** * *
6952609 CAATCCACTCGACTACAACTTCAGGGAGATAAGATT-ATTGGT-TGT
1 -AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAATT--TCTGT
* *
6952654 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATT--TTCCATG-
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAATTTC-TGT
* * * * ** *
6952696 -ATATGCTCTACTACAACTTCAGGGAAATAAGATTCGCTATCAT-T
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-AATTTC-TGT
* * ** *
6952740 AGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTT-ATCACTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTAATTTCTGT
* * * * * *
6952784 AATCCGCTCCACTACAATTTCAGGGAGATAGGATT-ATTGGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAATT-TCTGT
* ***
6952828 AATCTGCTCCACTACAACTTCAGGGAGATAAGATTCACCATCT-T
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-AATTTCTGT
* * * * ** *
6952872 CAGTCTACCCCACTACAACTTCAAGGG-GATAAGACTTGCTTTCTTT
1 -AATCTGCTCCACTGCAACTTC-AGGGAGATAAGA-TTAATTTCTGT
* * ****
6952918 AGTCTGCTCCACTGCAACTTCAGGGAGATATGATTCGCCATCT-T
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-AATTTCTGT
* * * * ** *
6952962 CAGTCTGCCCCACTACAACTTCAGGGGGATAAGACTTGCTTTCTTT
1 -AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTAATTTCTGT
* * * ** *
6953008 AGTCTGCTCCATTGCAACTTCAGGGAGATAAGACTT-GTAACTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTAATTTCTGT
** * * * *
6953052 AATCCACTCTACTGTAACTTCAGGGAGATAGGATT-ATTGGCAT-T
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAATT-TC-TGT
* * * ****
6953096 AATTTGCTTCACTACAACTTCAGGGAGATAAGATTTGCCATCT-T
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTAATTTCTGT
* * * * **
6953140 CAGTCTGCCCCACTGTAACTTCAGAGG-GATAAAACTTGCTTTCT-T
1 -AATCTGCTCCACTGCAACTTCAG-GGAGATAAGA-TTAATTTCTGT
* * * * * ** *
6953185 CAGTCTGCTCCACTACAACTTCAGAGAAATAAGAATT-GTAACTTT
1 -AATCTGCTCCACTGCAACTTCAGGGAGATAAG-ATTAATTTCTGT
* * * * *
6953230 AGTCCGCTCCACTGCAACTTCAGGGAGATAGGATT-ATTGGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAATT-TCTGT
* * *
6953274 AATTTGCTCCACTACAACTTTAGGGAG-TAAGATT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
6953308 TACCATCTTC
Statistics
Matches: 1098, Mismatches: 262, Indels: 205
0.70 0.17 0.13
Matches are distributed among these distances:
40 5 0.00
41 141 0.13
42 60 0.05
43 39 0.04
44 358 0.33
45 338 0.31
46 23 0.02
47 12 0.01
48 7 0.01
49 10 0.01
50 6 0.01
51 97 0.09
52 2 0.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.31
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAATTTCTGT
Found at i:6952041 original size:223 final size:223
Alignment explanation
Indices: 6951716--6952236 Score: 728
Period size: 223 Copynumber: 2.3 Consensus size: 223
6951706 CTTGTTATGG
* * ** * *
6951716 TCTGCTCTACTGCAACTTCA-GAAAGATAAGACCCGCTATCTTCAGTCTGCTCCACTGTAACTT-
1 TCTGCTCCACTGCAACTTCAGGGAA-ATAAGATTCACTATCTTCAGTCTGCTCCACTGCAACTTC
* * ** * *
6951779 TAGG-GATATAAACTGGT-GTCTTCAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTGT
65 AAGGAGATA-AAACT--TAAT-TTCAATCTACTCTACTGCAACTTCAGGGAGATAGGATTATTGG
* * *
6951842 CTGTAATCTGCTCCTCTGCAACTTCAGGGAGATAAGATTTTCCATGATCTGCTCTACTGCAACTT
126 CTGTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATGATCTACTCTACTGCAACTT
* *
6951907 CAGAGAGATAAGATCTGTGATTTATAGCTTTAA
191 CAGAGAGATAAGATATGTAATTTATAGCTTTAA
* * * *
6951940 TCTGTTCCACTGTAGCTTCAGGGAAATAAGATTCGCTATCATT-AGTCTGCTCCACTGCAACTTC
1 TCTGCTCCACTGCAACTTCAGGGAAATAAGATTCACTATC-TTCAGTCTGCTCCACTGCAACTTC
6952004 AAGGAGATAAAACTTAATTTCAATCTACTCTACTGCAACTTCAGGGAGATAGGATTATTGGCTGT
65 AAGGAGATAAAACTTAATTTCAATCTACTCTACTGCAACTTCAGGGAGATAGGATTATTGGCTGT
*
6952069 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCCATGATCTACTCTACTGCAACTTCAGA
130 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATGATCTACTCTACTGCAACTTCAGA
6952134 GAGATAAGATATGTAATTTATAGCTTTAA
195 GAGATAAGATATGTAATTTATAGCTTTAA
* *
6952163 TCTGCTCCACTGCAACTTTAGGGAAATAAGATTCACTATCTTCAGTCTGCTCCACTGCAACTTCC
1 TCTGCTCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTCAGTCTGCTCCACTGCAACTTCA
*
6952228 GGGAGATAA
66 AGGAGATAA
6952237 GGTTTGCCAT
Statistics
Matches: 264, Mismatches: 27, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
222 2 0.01
223 196 0.74
224 49 0.19
225 13 0.05
226 4 0.02
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.31
Consensus pattern (223 bp):
TCTGCTCCACTGCAACTTCAGGGAAATAAGATTCACTATCTTCAGTCTGCTCCACTGCAACTTCA
AGGAGATAAAACTTAATTTCAATCTACTCTACTGCAACTTCAGGGAGATAGGATTATTGGCTGTA
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATGATCTACTCTACTGCAACTTCAGAG
AGATAAGATATGTAATTTATAGCTTTAA
Found at i:6952232 original size:137 final size:137
Alignment explanation
Indices: 6952071--6952375 Score: 425
Period size: 137 Copynumber: 2.2 Consensus size: 137
6952061 TTGGCTGTAA
*
6952071 TCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCCATGATCTACTCTACTGCAACTTCAGAGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATGATCTACTCTACTGCAACTTCAGAGA
* *
6952136 GATAAGATATGTAATTTATAGCTTTAATCTGCTCC-ACTGCAACTTTAGGGAAATAAGATTCACT
66 GATAAGACATGTAATTTATAGCTTTAATCTGCTCCAAC-GCAACTTCAGGGAAATAAGATTCACT
6952200 ATC-TTCAG
130 ATCATT-AG
* * * * *
6952208 TCTGCTCCACTGCAACTTCCGGGAGATAAGGTTTGCCATGATCTGCTTTACTGCAACTTCAGAGG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATGATCTACTCTACTGCAACTTCAGAGA
* * * * **
6952273 GATAAGACCTGTGATTTATAGCTTTAATCTGTTCCAACGCAGCTTCAGGGAAATAAGATTCGTTA
66 GATAAGACATGTAATTTATAGCTTTAATCTGCTCCAACGCAACTTCAGGGAAATAAGATTCACTA
6952338 TCATTAG
131 TCATTAG
* * *
6952345 TCTACTCCACTGCAACTTTAGGAAGATAAGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA
6952376 CTTCACTTCA
Statistics
Matches: 147, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
137 143 0.97
138 4 0.03
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (137 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATGATCTACTCTACTGCAACTTCAGAGA
GATAAGACATGTAATTTATAGCTTTAATCTGCTCCAACGCAACTTCAGGGAAATAAGATTCACTA
TCATTAG
Found at i:6952252 original size:360 final size:359
Alignment explanation
Indices: 6951802--6952598 Score: 1186
Period size: 360 Copynumber: 2.2 Consensus size: 359
6951792 TGGTGTCTTC
* * * * * * * *
6951802 AATCCGCTCCACTGCAACTTCAGGGAGATAGGATT-ATTGTCTGTAATCTGCTCCTCTGCAACTT
1 AATCTGCTCCACTGCAACTTTAGGGAAATAAGATTCACTATCT-TAGTCTGCTCCACTGCAACTT
* *
6951866 CAGGGAGATAAGATTTTCCATGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTA
65 CAGGGAGATAAGATTTGCCATGATCTGCTCTACTGCAACTTCAGAGAGATAAGACCTGTGATTTA
* *
6951931 TAGCTTTAATCTGTTCC-ACTGTAGCTTCAGGGAAATAAGATTCGCTATCATTAGTCTGCTCCAC
130 TAGCTTTAATCTGTTCCAAC-GCAGCTTCAGGGAAATAAGATTCGCTATCATTAGTCTACTCCAC
* * * *
6951995 TGCAACTTCAAGG-AGATAAAACTTAATTTCAATCTACTCTACTGCAACTTCAGGGAGATAGGAT
194 TGCAACTT-AAGGAAGATAAAACTTAACTTCAATCCACTCCACTGCAACTTAAGGGAGATAGGAT
* * *
6952059 TATTGGCTGTAATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCCATGATCTACTCTACTG
258 TATTGGCTGTAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCCATGATCCACTCTACTG
6952124 CAACTTCAGAGAGATAAGATATGTAATTTATAGCTTT
323 CAACTTCAGAGAGATAAGATATGTAATTTATAGCTTT
6952161 AATCTGCTCCACTGCAACTTTAGGGAAATAAGATTCACTATCTTCAGTCTGCTCCACTGCAACTT
1 AATCTGCTCCACTGCAACTTTAGGGAAATAAGATTCACTATCTT-AGTCTGCTCCACTGCAACTT
* * * *
6952226 CCGGGAGATAAGGTTTGCCATGATCTGCTTTACTGCAACTTCAGAGGGATAAGACCTGTGATTTA
65 CAGGGAGATAAGATTTGCCATGATCTGCTCTACTGCAACTTCAGAGAGATAAGACCTGTGATTTA
*
6952291 TAGCTTTAATCTGTTCCAACGCAGCTTCAGGGAAATAAGATTCGTTATCATTAGTCTACTCCACT
130 TAGCTTTAATCTGTTCCAACGCAGCTTCAGGGAAATAAGATTCGCTATCATTAGTCTACTCCACT
* * * * *
6952356 GCAACTTTAGGAAGATAAGACTTCACTTCAATCCGCTCCACTGCAACTTAAGGGTGATAGGATTA
195 GCAACTTAAGGAAGATAAAACTTAACTTCAATCCACTCCACTGCAACTTAAGGGAGATAGGATTA
* *
6952421 TTGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCCATGATCCACTTTACTGCA
260 TTGGCTGTAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCCATGATCCACTCTACTGCA
* *
6952486 ACTTCAGAGAGATAAGATCTGTGATTTATAGCTTT
325 ACTTCAGAGAGATAAGATATGTAATTTATAGCTTT
* * * * *
6952521 AATCTGTTCCACTGCAACTTTAGGGAAATAAGATTCGCTATCTTTAGTATGCTCTACTGCATCTT
1 AATCTGCTCCACTGCAACTTTAGGGAAATAAGATTCACTATC-TTAGTCTGCTCCACTGCAACTT
6952586 CAGGGAGATAAGA
65 CAGGGAGATAAGA
6952599 CTGGTGTCTT
Statistics
Matches: 393, Mismatches: 40, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
359 35 0.09
360 354 0.90
361 4 0.01
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.32
Consensus pattern (359 bp):
AATCTGCTCCACTGCAACTTTAGGGAAATAAGATTCACTATCTTAGTCTGCTCCACTGCAACTTC
AGGGAGATAAGATTTGCCATGATCTGCTCTACTGCAACTTCAGAGAGATAAGACCTGTGATTTAT
AGCTTTAATCTGTTCCAACGCAGCTTCAGGGAAATAAGATTCGCTATCATTAGTCTACTCCACTG
CAACTTAAGGAAGATAAAACTTAACTTCAATCCACTCCACTGCAACTTAAGGGAGATAGGATTAT
TGGCTGTAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCCATGATCCACTCTACTGCAA
CTTCAGAGAGATAAGATATGTAATTTATAGCTTT
Found at i:6952717 original size:225 final size:223
Alignment explanation
Indices: 6952167--6952728 Score: 705
Period size: 223 Copynumber: 2.5 Consensus size: 223
6952157 CTTTAATCTG
* * * * ** * * *
6952167 CTCCACTGCAACTTTAGGGAAATAAGATTCACTATCTTCAGTCTGCTCCACTGCAACTTCCGGGA
1 CTCCACTACAACTTAAGGGAGATAAGATT-ATTGGCTTTAATCTGCTCCACTGCAACTTCAGGGA
* * *
6952232 GATAAGGTTTGCCATGATCTGCTTTACTGCAACTTCAGAGGGATAAGACCTGTGATTTATAGCTT
65 GATAAGATTTGCCATGATCTGCTTTACTGCAACTTCAGAGAGATAAGATCTGTGATTTATAGCTT
* * *
6952297 TAATCTGTTCCAACGCAGCTTCAGGGAAATAAGATTCGTTATCATTAGTCTACTCCACTGCAACT
130 TAATCTGTTCCAACGCAACTTCAGGGAAATAAGATTCGCTATCATTAGTATACTCCACTGCAACT
* *
6952362 TTAGGAAGATAAGACTTCACTTCAATCCG
195 TCAGGAAGATAAGACTTCACTTCAATCCA
* * * *
6952391 CTCCACTGCAACTTAAGGGTGATAGGATTATTGGCTTTAATCTGCTCCACTACAACTTCAGGGAG
1 CTCCACTACAACTTAAGGGAGATAAGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAG
**
6952456 ATAAGATTTGCCATGATCCACTTTACTGCAACTTCAGAGAGATAAGATCTGTGATTTATAGCTTT
66 ATAAGATTTGCCATGATCTGCTTTACTGCAACTTCAGAGAGATAAGATCTGTGATTTATAGCTTT
* * * * *
6952521 AATCTGTTCC-ACTGCAACTTTAGGGAAATAAGATTCGCTATCTTTAGTATGCTCTACTGCATCT
131 AATCTGTTCCAAC-GCAACTTCAGGGAAATAAGATTCGCTATCATTAGTATACTCCACTGCAACT
* **
6952585 TCAGGGAGATAAGACTGGTGTCTTCAATCCA
195 TCAGGAAGATAAGACT--TCACTTCAATCCA
* * *
6952616 CTCGACTACAACTTCAGGGAGATAAGATTATTGG-TTGTAATCTGCTCCACTGCAACTTCAAGGA
1 CTCCACTACAACTTAAGGGAGATAAGATTATTGGCTT-TAATCTGCTCCACTGCAACTTCAGGGA
* * * * * *
6952680 GATAAGATTTTCCATGATATGCTCTACTACAACTTCAGGGAAATAAGAT
65 GATAAGATTTGCCATGATCTGCTTTACTGCAACTTCAGAGAGATAAGAT
6952729 TCGCTATCAT
Statistics
Matches: 290, Mismatches: 44, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
222 2 0.01
223 156 0.54
224 27 0.09
225 105 0.36
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (223 bp):
CTCCACTACAACTTAAGGGAGATAAGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAG
ATAAGATTTGCCATGATCTGCTTTACTGCAACTTCAGAGAGATAAGATCTGTGATTTATAGCTTT
AATCTGTTCCAACGCAACTTCAGGGAAATAAGATTCGCTATCATTAGTATACTCCACTGCAACTT
CAGGAAGATAAGACTTCACTTCAATCCA
Found at i:6952769 original size:174 final size:176
Alignment explanation
Indices: 6952529--6953040 Score: 527
Period size: 174 Copynumber: 2.9 Consensus size: 176
6952519 TTAATCTGTT
* * * * *
6952529 CCACTGCAACTTTAGGGAAATAAGATTCGCTATCTTTAGTATGCTCTACTGCATCTTCAGGGAGA
1 CCACTACAACTTCAGGGAAATAAGATTCGCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAGA
* ** *
6952594 TAAGACTGGTGTCTTCAATCCACTCGACTACAACTTCAGGGAGATAAGATTATTGG-TTGTAATC
66 TAAGACTGATCACTTCAATCCACTCCACTACAACTTCAGGGAGATAAGATTATTGGCTT-TAATC
* ** *
6952658 TGCTCCACTGCAACTTCAAGGAGATAAGATTTTCCATGAT-A-TGCT-
130 TGCTCCACTACAACTTCAAGGAGATAAGATTCACCATCATCAGT-CTC
* * *
6952703 CTACTACAACTTCAGGGAAATAAGATTCGCTATCATTAGTCTGCTCCACTGCAACTTCAAGGAGA
1 CCACTACAACTTCAGGGAAATAAGATTCGCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAGA
* * * * *
6952768 TAAGACTTATCACTTTAATCCGCTCCACTACAATTTCAGGGAGATAGGATTATTGGCTTTAATCT
66 TAAGACTGATCACTTCAATCCACTCCACTACAACTTCAGGGAGATAAGATTATTGGCTTTAATCT
* *
6952833 GCTCCACTACAACTTCAGGGAGATAAGATTCACCATCTTCAGTCTACC
131 GCTCCACTACAACTTCAAGGAGATAAGATTCACCATCATCAGTCT--C
* *
6952881 CCACTACAACTTCAAGGG-GATAAGACTT-GCTTTCTTTAGTCTGCTCCACTGCAACTTCAGGGA
1 CCACTACAACTTC-AGGGAAATAAGA-TTCGCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGA
* * * * ** * * * *
6952944 GATATGATTCG-CCATCTTCAGTCTGCCCCACTACAACTTCAGGGGGATAAGACTTGCTT-TCTT
64 GATAAGACT-GATCA-CTTCAATCCACTCCACTACAACTTCAGGGAGATAAGA-TT-ATTGGCTT
* * * *
6953007 TAGTCTGCTCCATTGCAACTTCAGGGAGATAAGA
125 TAATCTGCTCCACTACAACTTCAAGGAGATAAGA
6953041 CTTGTAACTT
Statistics
Matches: 282, Mismatches: 44, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
174 143 0.51
175 5 0.02
176 1 0.00
178 59 0.21
179 36 0.13
180 36 0.13
181 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (176 bp):
CCACTACAACTTCAGGGAAATAAGATTCGCTATCTTTAGTCTGCTCCACTGCAACTTCAGGGAGA
TAAGACTGATCACTTCAATCCACTCCACTACAACTTCAGGGAGATAAGATTATTGGCTTTAATCT
GCTCCACTACAACTTCAAGGAGATAAGATTCACCATCATCAGTCTC
Found at i:6953017 original size:268 final size:268
Alignment explanation
Indices: 6952705--6953208 Score: 760
Period size: 268 Copynumber: 1.9 Consensus size: 268
6952695 GATATGCTCT
6952705 ACTACAACTTCAGGGAAATAAGATTCGCTATCATTAGTCTGCTCCACTGCAACTTCAAGGAGATA
1 ACTACAACTTCAGGGAAATAAGATTCGCTATCATTAGTCTGCTCCACTGCAACTTCAAGGAGATA
* * * *
6952770 AGACTTATCACTTTAATCCGCTCCACTACAATTTCAGGGAGATAGGATTATTGGCTTTAATCTGC
66 AGACTTATAACTTTAATCCACTCCACTACAACTTCAGGGAGATAGGATTATTGGCATTAATCTGC
6952835 TCCACTACAACTTCAGGGAGATAAGATTCACCATCTTCAGTCTACCCCACTACAACTTCA-AGGG
131 TCCACTACAACTTCAGGGAGATAAGATTCACCATCTTCAGTCTACCCCACTACAACTTCAGA-GG
* * *
6952899 GATAAGACTTGCTTTCTTTAGTCTGCTCCACTGCAACTTCAGGGAGATATGATTCGCCATCTTCA
195 GATAAAACTTGCTTTCTTCAGTCTGCTCCACTACAACTTCAGGGAGATATGATTCGCCATCTTCA
6952964 GTCTGCCCC
260 GTCTGCCCC
** * * * *
6952973 ACTACAACTTCAGGGGGATAAGACTT-GCTTTCTTTAGTCTGCTCCATTGCAACTTCAGGGAGAT
1 ACTACAACTTCAGGGAAATAAGA-TTCGCTATCATTAGTCTGCTCCACTGCAACTTCAAGGAGAT
* * ** *
6953037 AAGACTTGTAACTTTAATCCACTCTACTGTAACTTCAGGGAGATAGGATTATTGGCATTAATTTG
65 AAGACTTATAACTTTAATCCACTCCACTACAACTTCAGGGAGATAGGATTATTGGCATTAATCTG
* ** * **
6953102 CTTCACTACAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCCCACTGTAACTTCAGAGG
130 CTCCACTACAACTTCAGGGAGATAAGATTCACCATCTTCAGTCTACCCCACTACAACTTCAGAGG
6953167 GATAAAACTTGCTTTCTTCAGTCTGCTCCACTACAACTTCAG
195 GATAAAACTTGCTTTCTTCAGTCTGCTCCACTACAACTTCAG
6953209 AGAAATAAGA
Statistics
Matches: 210, Mismatches: 24, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
268 207 0.99
269 3 0.01
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (268 bp):
ACTACAACTTCAGGGAAATAAGATTCGCTATCATTAGTCTGCTCCACTGCAACTTCAAGGAGATA
AGACTTATAACTTTAATCCACTCCACTACAACTTCAGGGAGATAGGATTATTGGCATTAATCTGC
TCCACTACAACTTCAGGGAGATAAGATTCACCATCTTCAGTCTACCCCACTACAACTTCAGAGGG
ATAAAACTTGCTTTCTTCAGTCTGCTCCACTACAACTTCAGGGAGATATGATTCGCCATCTTCAG
TCTGCCCC
Found at i:6953116 original size:178 final size:178
Alignment explanation
Indices: 6952922--6953317 Score: 596
Period size: 178 Copynumber: 2.2 Consensus size: 178
6952912 TTCTTTAGTC
* * * *
6952922 TGCTCCACTGCAACTTCAGGGAGATATGATTCGCCATCTTCAGTCTGCCCCACTACAACTTCAGG
1 TGCTCCACTACAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCCCACTACAACTTCAGA
* * * * * * *
6952987 GGGATAAGACTTGCTTTCTTTAGTCTGCTCCATTGCAACTTCAGGGAGATAAGACTTGTAACTTT
66 GGGATAAAACTTGCTTTCTTCAGTCTGCTCCACTACAACTTCAGAGAAATAAGAATTGTAACTTT
* *
6953052 AATCCACTCTACTGTAACTTCAGGGAGATAGGATTATTGGCATTAATT
131 AATCCACTCCACTGCAACTTCAGGGAGATAGGATTATTGGCATTAATT
* **
6953100 TGCTTCACTACAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCCCACTGTAACTTCAGA
1 TGCTCCACTACAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCCCACTACAACTTCAGA
6953165 GGGATAAAACTTGCTTTCTTCAGTCTGCTCCACTACAACTTCAGAGAAATAAGAATTGTAACTTT
66 GGGATAAAACTTGCTTTCTTCAGTCTGCTCCACTACAACTTCAGAGAAATAAGAATTGTAACTTT
* * *
6953230 AGTCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATT
131 AATCCACTCCACTGCAACTTCAGGGAGATAGGATTATTGGCATTAATT
* *
6953278 TGCTCCACTACAACTTTAGGGAG-TAAGATTTACCATCTTC
1 TGCTCCACTACAACTTCAGGGAGATAAGATTTGCCATCTTC
6953318 TTTGATTCAT
Statistics
Matches: 196, Mismatches: 22, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
177 16 0.08
178 180 0.92
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (178 bp):
TGCTCCACTACAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCCCACTACAACTTCAGA
GGGATAAAACTTGCTTTCTTCAGTCTGCTCCACTACAACTTCAGAGAAATAAGAATTGTAACTTT
AATCCACTCCACTGCAACTTCAGGGAGATAGGATTATTGGCATTAATT
Found at i:6953217 original size:90 final size:90
Alignment explanation
Indices: 6952705--6953218 Score: 424
Period size: 90 Copynumber: 5.8 Consensus size: 90
6952695 GATATGCTCT
* * * * *
6952705 ACTACAACTTCAG-GGAAATAAGA-TTCGCTATCATTAGTCTGCTCCACTGCAACTTCAAGGAGA
1 ACTACAACTTCAGAGG-GATAAGACTT-GCTTTCTTTAGTCTGCTCCACTACAACTTCAGGGAGA
** * * ** *
6952768 TAAGACTT-ATCA-CTTTAATCCGCTCC
64 TAAGA-TTCGCCATCTTCAGTCTACCCC
* * * * *
6952794 ACTACAATTTCAG-GGAGATAGGA-TT-ATTGGCTTTAATCTGCTCCACTACAACTTCAGGGAGA
1 ACTACAACTTCAGAGG-GATAAGACTTGCTT-TCTTTAGTCTGCTCCACTACAACTTCAGGGAGA
*
6952856 TAAGATTCACCATCTTCAGTCTACCCC
64 TAAGATTCGCCATCTTCAGTCTACCCC
*
6952883 ACTACAACTTCA-AGGGGATAAGACTTGCTTTCTTTAGTCTGCTCCACTGCAACTTCAGGGAGAT
1 ACTACAACTTCAGA-GGGATAAGACTTGCTTTCTTTAGTCTGCTCCACTACAACTTCAGGGAGAT
* *
6952947 ATGATTCGCCATCTTCAGTCTGCCCC
65 AAGATTCGCCATCTTCAGTCTACCCC
* * *
6952973 ACTACAACTTCAGGGGGATAAGACTTGCTTTCTTTAGTCTGCTCCATTGCAACTTCAGGGAGATA
1 ACTACAACTTCAGAGGGATAAGACTTGCTTTCTTTAGTCTGCTCCACTACAACTTCAGGGAGATA
* * * * * * *
6953038 AGACTT-G-TAACTTTAATCCACTCT
66 AGA-TTCGCCATCTTCAGTCTACCCC
** * * * * * * *
6953062 ACTGTAACTTCAG-GGAGATAGGA-TT-ATTGGCATTAATTTGCTTCACTACAACTTCAGGGAGA
1 ACTACAACTTCAGAGG-GATAAGACTTGCTT-TCTTTAGTCTGCTCCACTACAACTTCAGGGAGA
* *
6953124 TAAGATTTGCCATCTTCAGTCTGCCCC
64 TAAGATTCGCCATCTTCAGTCTACCCC
** * * * *
6953151 ACTGTAACTTCAGAGGGATAAAACTTGCTTTCTTCAGTCTGCTCCACTACAACTTCAGAGAAATA
1 ACTACAACTTCAGAGGGATAAGACTTGCTTTCTTTAGTCTGCTCCACTACAACTTCAGGGAGATA
6953216 AGA
66 AGA
6953219 ATTGTAACTT
Statistics
Matches: 343, Mismatches: 66, Indels: 31
0.78 0.15 0.07
Matches are distributed among these distances:
87 7 0.02
88 72 0.21
89 101 0.29
90 157 0.46
91 6 0.02
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (90 bp):
ACTACAACTTCAGAGGGATAAGACTTGCTTTCTTTAGTCTGCTCCACTACAACTTCAGGGAGATA
AGATTCGCCATCTTCAGTCTACCCC
Found at i:6954640 original size:49 final size:50
Alignment explanation
Indices: 6954566--6954661 Score: 176
Period size: 49 Copynumber: 1.9 Consensus size: 50
6954556 TCTATTTTTT
6954566 TTTTGTTTTAGGACTCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTCGTC
1 TTTTGTTTTAGGACTCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTCGTC
*
6954616 TTTT-TTTTAGGACTCAAAGTGCCCTTTGCGGGTTTTCACCTTGGTC
1 TTTTGTTTTAGGACTCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTC
6954662 CATTCTCCTT
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 41 0.91
50 4 0.09
ACGTcount: A:0.12, C:0.23, G:0.23, T:0.42
Consensus pattern (50 bp):
TTTTGTTTTAGGACTCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTCGTC
Found at i:6955607 original size:17 final size:18
Alignment explanation
Indices: 6955585--6955622 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
6955575 TGACTTCTCA
6955585 TTTTTCTT-TCCTTTTCT
1 TTTTTCTTCTCCTTTTCT
*
6955602 TTTTTCTTCTCTTTTTCT
1 TTTTTCTTCTCCTTTTCT
6955620 TTT
1 TTT
6955623 CTTTTTTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTTCTTCTCCTTTTCT
Found at i:6955676 original size:30 final size:30
Alignment explanation
Indices: 6955640--6955708 Score: 104
Period size: 31 Copynumber: 2.2 Consensus size: 30
6955630 CATCATTTTC
6955640 ATTTTTTCATTTTATTATTA-TTTTTGAAAT
1 ATTTTTTCATTTT-TTATTATTTTTTGAAAT
6955670 ATTTTTTTCATTTTTTATTATTTTTTTGAAAT
1 A-TTTTTTCATTTTTTATTA-TTTTTTGAAAT
6955702 ATTTTTT
1 ATTTTTT
6955709 GATTGGATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
30 7 0.19
31 18 0.50
32 11 0.31
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (30 bp):
ATTTTTTCATTTTTTATTATTTTTTGAAAT
Found at i:6955696 original size:32 final size:31
Alignment explanation
Indices: 6955641--6955708 Score: 111
Period size: 32 Copynumber: 2.2 Consensus size: 31
6955631 ATCATTTTCA
6955641 TTTTTTCATTTTATTATTATTTTTGAAATAT
1 TTTTTTCATTTTATTATTATTTTTGAAATAT
6955672 TTTTTTCATTTT-TTATTATTTTTTTGAAATAT
1 TTTTTTCATTTTATTATTA--TTTTTGAAATAT
6955704 TTTTT
1 TTTTT
6955709 GATTGGATCT
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
30 6 0.17
31 12 0.34
32 17 0.49
ACGTcount: A:0.22, C:0.03, G:0.03, T:0.72
Consensus pattern (31 bp):
TTTTTTCATTTTATTATTATTTTTGAAATAT
Found at i:6959623 original size:4 final size:4
Alignment explanation
Indices: 6959614--6959652 Score: 78
Period size: 4 Copynumber: 9.8 Consensus size: 4
6959604 AACAATATAT
6959614 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
6959653 AGTGAAAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:6960649 original size:6 final size:7
Alignment explanation
Indices: 6960628--6960652 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
6960618 AAAGGTATGA
6960628 TTTCTTT
1 TTTCTTT
6960635 TTTCTTT
1 TTTCTTT
6960642 TTTCTTT
1 TTTCTTT
6960649 TTTC
1 TTTC
6960653 ACATATATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTCTTT
Found at i:6966645 original size:28 final size:28
Alignment explanation
Indices: 6966582--6966662 Score: 137
Period size: 28 Copynumber: 2.9 Consensus size: 28
6966572 GAAGGGACTT
6966582 TAAGTGTAGACTTCACAAATGTG-TTTC
1 TAAGTGTAGACTTCACAAATGTGTTTTC
*
6966609 TAAATGTAGACTTCACAAATGTGTTTTC
1 TAAGTGTAGACTTCACAAATGTGTTTTC
*
6966637 TAAGTGTAGACTTCACAAATATGTTT
1 TAAGTGTAGACTTCACAAATGTGTTT
6966663 GATTTAAGTT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
27 22 0.44
28 28 0.56
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (28 bp):
TAAGTGTAGACTTCACAAATGTGTTTTC
Found at i:6970822 original size:44 final size:44
Alignment explanation
Indices: 6970707--6970822 Score: 119
Period size: 44 Copynumber: 2.6 Consensus size: 44
6970697 GACTTCAATT
* * *
6970707 TGCTCCATTGCAACCTCAAGGAGATAAGATTTGCTTCTTCAGTC
1 TGCTCCACTGCAACCTCAGGGAGATAAGACTTGCTTCTTCAGTC
* ** * *
6970751 TGCCCCACTGTGACTTCAGGG-GTATAAGACTTG-TTTTCTCAGTC
1 TGCTCCACTGCAACCTCAGGGAG-ATAAGACTTGCTTCT-TCAGTC
*
6970795 TGCTCCACTGCAACCTGAGGGAGATAAG
1 TGCTCCACTGCAACCTCAGGGAGATAAG
6970823 GCCTGATGCG
Statistics
Matches: 56, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
43 4 0.07
44 51 0.91
45 1 0.02
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.29
Consensus pattern (44 bp):
TGCTCCACTGCAACCTCAGGGAGATAAGACTTGCTTCTTCAGTC
Found at i:6970930 original size:44 final size:45
Alignment explanation
Indices: 6970837--6971041 Score: 141
Period size: 44 Copynumber: 4.6 Consensus size: 45
6970827 GATGCGATCC
* * * * * * * *
6970837 ACTCTACTGCAACTTCAGAGAGATAAGATCTATTA-CTTTAATTT
1 ACTCCACTACAACTTTAGGGAGATAAGATTTATCAGCTTCAATCT
* * * *
6970881 GCTCCACTACAACTTCAGGGAGATAGGA-TTATCGGCTTCAATCT
1 ACTCCACTACAACTTTAGGGAGATAAGATTTATCAGCTTCAATCT
* * * *
6970925 ACTCCACTATAACTTTAGGGAGATAAGATTTGTCATCTTCGATCT
1 ACTCCACTACAACTTTAGGGAGATAAGATTTATCAGCTTCAATCT
* * ** *
6970970 AC-CACACTACAACTTTAGGGGGATAAGACCTGCTTA-C-TCAATCT
1 ACTC-CACTACAACTTTAGGGAGATAAGA-TTTATCAGCTTCAATCT
* * *
6971014 GCTCCGCTACAACTTCAGGGAGATAAGA
1 ACTCCACTACAACTTTAGGGAGATAAGA
6971042 CCTGATGCGA
Statistics
Matches: 127, Mismatches: 29, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
43 3 0.02
44 83 0.65
45 38 0.30
46 3 0.02
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (45 bp):
ACTCCACTACAACTTTAGGGAGATAAGATTTATCAGCTTCAATCT
Found at i:6971093 original size:218 final size:217
Alignment explanation
Indices: 6970603--6971142 Score: 695
Period size: 218 Copynumber: 2.5 Consensus size: 217
6970593 TATAGTCAGC
* ** * *
6970603 AAGACTTGATGCGATCTGCTCTATTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCAGCTC
1 AAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCTGCTC
* * * * * * *
6970668 CATTACAACCTCAGGGAGATAGGATTATCGACTTCAATTTGCTCCATTGCAACCTCAAGGAGATA
66 CACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTACTCCACTACAACCTCAAGGAGATA
* * * *** * * * * *
6970733 AGATTTGCTTCTTCAGTCTGCCCCACTGTGACTTCAGGGGTATAAGACTTGTTTTCTCAGTCTGC
131 AGATTTGCATCTTCAGTCTACCACACTACAACTTCAGGGGGATAAGACCTGCTTACTCAATCTGC
* *
6970798 TCCACTGCAACCTGAGGGAGAT
196 TCCACTACAACCTCAGGGAGAT
* *
6970820 AAGGCCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATTTGCTC
1 AAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCTGCTC
* * * *
6970885 CACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTACTCCACTATAACTTTAGGGAGATA
66 CACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTACTCCACTACAACCTCAAGGAGATA
*
6970950 AGATTTGTCATCTTC-GATCTACCACACTACAACTTTAGGGGGATAAGACCTGCTTACTCAATCT
131 AGATTTG-CATCTTCAG-TCTACCACACTACAACTTCAGGGGGATAAGACCTGCTTACTCAATCT
* *
6971014 GCTCCGCTACAACTTCAGGGAGAT
194 GCTCCACTACAACCTCAGGGAGAT
* * * *
6971038 AAGACCTGATGCGATCCACTCTGCTGCAACTTCAGAGAGATGAGATCTATTACTTTAATCTGTTG
1 AAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCTGCTC
* *
6971103 CACTATAACTTCAGGGAGATAGGATTATCAGCTTCAATCT
66 CACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCT
6971143 GCTTCCTTAC
Statistics
Matches: 279, Mismatches: 42, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
217 120 0.43
218 159 0.57
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (217 bp):
AAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCTGCTC
CACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTACTCCACTACAACCTCAAGGAGATA
AGATTTGCATCTTCAGTCTACCACACTACAACTTCAGGGGGATAAGACCTGCTTACTCAATCTGC
TCCACTACAACCTCAGGGAGAT
Found at i:6971350 original size:128 final size:128
Alignment explanation
Indices: 6971138--6971776 Score: 693
Period size: 128 Copynumber: 4.9 Consensus size: 128
6971128 TATCAGCTTC
* * * *
6971138 AATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTACTCCGCTACTGCTTAGGG
1 AATCTGCTTCCTTACTCTTGAAGATAAGATTTGTCGTCTTCGATCTGCTCCGCTACTGCTTAGGG
* ** * * * *
6971203 AGACAATATCTGTACTTTCCAACCTATTCCACTGCTGGC-CAGGGATAT-AGGACTT-GTGGCCT
66 AGACAAGATCTACAATTT-CAACCTACTCCACTGCT-GCTCAGGGAGATAAGG-CTTGGTGGCAT
6971265 A
128 A
*
6971266 AATCTGCTTCCTTACTCTTGAAGATAAGATTTGTCGTCTTTGATCTGCTCCGCTACTGCTTAGGG
1 AATCTGCTTCCTTACTCTTGAAGATAAGATTTGTCGTCTTCGATCTGCTCCGCTACTGCTTAGGG
* * * * * *
6971331 AGACAAGATCTAAAATTTCCAACCTATTCCACTGCTGAC-CAGGGACAT-AGAACAT-GTGGCTT
66 AGACAAGATCTACAATTT-CAACCTACTCCACTGCTG-CTCAGGGAGATAAG-GCTTGGTGGCAT
6971393 A
128 A
* * * *
6971394 AATCTACTTCCTTACACTTGAAGATAAGATTCGTAGTCTTCGATCTGCTCCGCTACTGCTTAGGG
1 AATCTGCTTCCTTACTCTTGAAGATAAGATTTGTCGTCTTCGATCTGCTCCGCTACTGCTTAGGG
* * **
6971459 AAACAAAATCTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGGTGGCATA
66 AGACAAGATCTACAA-TTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGGTGGCATA
* * * * * *
6971523 AATCTGCTTCC-CACTATCTTGGAAATATAAGATTTTTCGTCCTCGATCTGCTCCACTACTACTT
1 AATCTGCTTCCTTAC--TCTT-G-AAGATAAGATTTGTCGTCTTCGATCTGCTCCGCTACTGCTT
* *
6971587 AGGGAGATAAGATCTACAATCTTCAACCTACTCCACTGCTACTCAGGGAGATAAGGCTTGGTGGC
62 AGGGAGACAAGATCTACAAT-TTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGGTGGC
6971652 ATA
126 ATA
* * * * *
6971655 AATTTGCTTCC-CACTATCTTGGAAAGATAAGATTT-TCCGTCCTCGATCTACTCCACTACTGCT
1 AATCTGCTTCCTTAC--TCTT-G-AAGATAAGATTTGT-CGTCTTCGATCTGCTCCGCTACTGCT
*
6971718 TAGGGAGATAAGATCTACAATATTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCT
61 TAGGGAGACAAGATCTACAAT-TTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCT
6971777 AGCAATTTCA
Statistics
Matches: 450, Mismatches: 49, Indels: 20
0.87 0.09 0.04
Matches are distributed among these distances:
127 2 0.00
128 212 0.47
129 22 0.05
130 3 0.01
131 3 0.01
132 208 0.46
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.30
Consensus pattern (128 bp):
AATCTGCTTCCTTACTCTTGAAGATAAGATTTGTCGTCTTCGATCTGCTCCGCTACTGCTTAGGG
AGACAAGATCTACAATTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGGTGGCATA
Found at i:6971588 original size:132 final size:129
Alignment explanation
Indices: 6971138--6971776 Score: 688
Period size: 132 Copynumber: 4.9 Consensus size: 129
6971128 TATCAGCTTC
* * * *
6971138 AATCTGCTTCCTTAC-A-CTTGAAGATAAGATTCGCCGTCTTCGATCTACTCCGCTACTGCTTAG
1 AATCTGCTTCC-CACTATCTTGAAGATAAGATTTGTCGTCTTCGATCTGCTCCGCTACTGCTTAG
* ** * * * * *
6971201 GGAGACAATATCTGTACTTTCCAACCTATTCCACTGCTGGC-CAGGGATAT-AGGACTTGTGGCC
65 GGAGACAAGATCTACAATTTTCAACCTACTCCACTGCT-GCTCAGGGAGATAAGG-CTTGTGGCA
6971264 TA
128 TA
* *
6971266 AATCTGCTT-CC-TTACTCTTGAAGATAAGATTTGTCGTCTTTGATCTGCTCCGCTACTGCTTAG
1 AATCTGCTTCCCACTA-TCTTGAAGATAAGATTTGTCGTCTTCGATCTGCTCCGCTACTGCTTAG
* * * * * * *
6971329 GGAGACAAGATCTAAAATTTCCAACCTATTCCACTGCTGAC-CAGGGACAT-AGAACATGTGGCT
65 GGAGACAAGATCTACAATTTTCAACCTACTCCACTGCTG-CTCAGGGAGATAAG-GCTTGTGGCA
6971392 TA
128 TA
* * * *
6971394 AATCTACTTCCTTAC-A-CTTGAAGATAAGATTCGTAGTCTTCGATCTGCTCCGCTACTGCTTAG
1 AATCTGCTTCC-CACTATCTTGAAGATAAGATTTGTCGTCTTCGATCTGCTCCGCTACTGCTTAG
* * **
6971457 GGAAACAAAATCTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGGTGGCAT
65 GGAGACAAGATCTACAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTT-GTGGCAT
6971522 A
129 A
* * * * *
6971523 AATCTGCTTCCCACTATCTTGGAAATATAAGATTTTTCGTCCTCGATCTGCTCCACTACTACTTA
1 AATCTGCTTCCCACTATCTT-G-AAGATAAGATTTGTCGTCTTCGATCTGCTCCGCTACTGCTTA
* * *
6971588 GGGAGATAAGATCTACAATCTTCAACCTACTCCACTGCTACTCAGGGAGATAAGGCTTGGTGGCA
64 GGGAGACAAGATCTACAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTT-GTGGCA
6971653 TA
128 TA
* * * *
6971655 AATTTGCTTCCCACTATCTTGGAAAGATAAGATTT-TCCGTCCTCGATCTACTCCACTACTGCTT
1 AATCTGCTTCCCACTATCTT-G-AAGATAAGATTTGT-CGTCTTCGATCTGCTCCGCTACTGCTT
* *
6971719 AGGGAGATAAGATCTACAATATTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCT
63 AGGGAGACAAGATCTACAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCT
6971777 AGCAATTTCA
Statistics
Matches: 443, Mismatches: 52, Indels: 28
0.85 0.10 0.05
Matches are distributed among these distances:
126 1 0.00
127 3 0.01
128 203 0.46
129 21 0.05
130 4 0.01
131 2 0.00
132 209 0.47
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.30
Consensus pattern (129 bp):
AATCTGCTTCCCACTATCTTGAAGATAAGATTTGTCGTCTTCGATCTGCTCCGCTACTGCTTAGG
GAGACAAGATCTACAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTTGTGGCATA
Found at i:6973025 original size:15 final size:15
Alignment explanation
Indices: 6973002--6973035 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
6972992 AGCCTCTCCA
6973002 TTTTAATTTTTCATT
1 TTTTAATTTTTCATT
*
6973017 TTTTCATTTTTCATT
1 TTTTAATTTTTCATT
6973032 TTTT
1 TTTT
6973036 TTCTTTGACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTAATTTTTCATT
Found at i:6976925 original size:108 final size:106
Alignment explanation
Indices: 6976737--6976931 Score: 302
Period size: 108 Copynumber: 1.8 Consensus size: 106
6976727 AAAATCTAAG
*
6976737 AGGATATTTGGCTATTTGGTTAAACGAGAAATCGAAACCTAGCACATTAGGACACATTTCCTCGA
1 AGGATATTTAGCTATTTGGTTAAACGAGAAATCGAAACCTAGCACATTAGGACACATTTCCTCGA
6976802 ATTTCCAAACACAAAATATTGTCTTATTTCGAAATTTTAAA
66 ATTTCCAAACACAAAATATTGTCTTATTTCGAAATTTTAAA
* * * *
6976843 AGGATATTTAGCTATTTGGTTGAATGAGAAAAATCGAAA-CTCAGCACATTAGGGCACGTTTCCT
1 AGGATATTTAGCTATTTGGTTAAACGAG--AAATCGAAACCT-AGCACATTAGGACACATTTCCT
*
6976907 CGAATTTCCAAACGCAAAATATTGT
63 CGAATTTCCAAACACAAAATATTGT
6976932 GTTTATTATT
Statistics
Matches: 80, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
106 25 0.31
107 2 0.03
108 53 0.66
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (106 bp):
AGGATATTTAGCTATTTGGTTAAACGAGAAATCGAAACCTAGCACATTAGGACACATTTCCTCGA
ATTTCCAAACACAAAATATTGTCTTATTTCGAAATTTTAAA
Found at i:6977897 original size:3 final size:3
Alignment explanation
Indices: 6977861--6977960 Score: 103
Period size: 3 Copynumber: 33.3 Consensus size: 3
6977851 AAATAGAAAT
* * * * * **
6977861 ATA ATG ATA ATA ACA ATA ACA TTA ATA CTA ATA ATA ATA GA-A AGG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA
* *
6977906 ATG ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6977954 ATA ATA A
1 ATA ATA A
6977961 AATTGCTAAA
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
2 1 0.01
3 80 0.98
4 1 0.01
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:6983939 original size:17 final size:18
Alignment explanation
Indices: 6983919--6983960 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
6983909 ATTTTAAAGT
6983919 AAAAGAATTAATA-AATA
1 AAAAGAATTAATATAATA
*
6983936 AAAA-AATTTATATAATA
1 AAAAGAATTAATATAATA
6983953 AACAAGAA
1 AA-AAGAA
6983961 AAGGCAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 7 0.33
17 10 0.48
18 2 0.10
19 2 0.10
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.24
Consensus pattern (18 bp):
AAAAGAATTAATATAATA
Found at i:6983976 original size:5 final size:5
Alignment explanation
Indices: 6983966--6983990 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
6983956 AAGAAAAGGC
6983966 AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT
6983991 CCCTAAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:6984231 original size:16 final size:16
Alignment explanation
Indices: 6984202--6984234 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
6984192 TCTCATTCAT
6984202 TTAATATTTATAAATA
1 TTAATATTTATAAATA
6984218 TTAA-ATTTATTAAATA
1 TTAATATTTA-TAAATA
6984234 T
1 T
6984235 ATATAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TTAATATTTATAAATA
Found at i:6985825 original size:8 final size:8
Alignment explanation
Indices: 6985814--6985879 Score: 51
Period size: 8 Copynumber: 7.5 Consensus size: 8
6985804 AAAAATATAA
6985814 AAAATTAT
1 AAAATTAT
6985822 AAAATTAT
1 AAAATTAT
6985830 AAAATTTTAAT
1 AAAA--TT-AT
*
6985841 AAAAATAT
1 AAAATTAT
*
6985849 AAAAATATT
1 AAAATTA-T
*
6985858 CAAAATTAGA
1 -AAAATTA-T
6985868 AAAATTAT
1 AAAATTAT
6985876 AAAA
1 AAAA
6985880 AAATTTGTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
8 25 0.52
9 9 0.19
10 8 0.17
11 6 0.12
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (8 bp):
AAAATTAT
Found at i:6985863 original size:37 final size:37
Alignment explanation
Indices: 6985802--6985883 Score: 105
Period size: 37 Copynumber: 2.2 Consensus size: 37
6985792 ACATATGGCA
* * *
6985802 AAAAAAATATAAAAAATTATAAAATTA-TAAAATTTT
1 AAAAAAATATAAAAAATTACAAAATTAGAAAAATTAT
6985838 AATAAAAATATAAAAATATT-CAAAATTAGAAAAATTAT
1 AA-AAAAATATAAAAA-ATTACAAAATTAGAAAAATTAT
6985876 AAAAAAAT
1 AAAAAAAT
6985884 TTGTAACATT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
36 2 0.05
37 26 0.65
38 12 0.30
ACGTcount: A:0.68, C:0.01, G:0.01, T:0.29
Consensus pattern (37 bp):
AAAAAAATATAAAAAATTACAAAATTAGAAAAATTAT
Found at i:6985880 original size:10 final size:10
Alignment explanation
Indices: 6985802--6985920 Score: 56
Period size: 10 Copynumber: 12.4 Consensus size: 10
6985792 ACATATGGCA
*
6985802 AAAAAAATAT
1 AAAAAATTAT
6985812 AAAAAATTAT
1 AAAAAATTAT
6985822 --AAAATTAT
1 AAAAAATTAT
*
6985830 --AAAATTTT
1 AAAAAATTAT
*
6985838 AATAAAAATAT
1 AA-AAAATTAT
6985849 -AAAAA-TAT
1 AAAAAATTAT
**
6985857 TCAAAATTA-
1 AAAAAATTAT
*
6985866 GAAAAATTAT
1 AAAAAATTAT
6985876 AAAAAAATT-T
1 -AAAAAATTAT
** * *
6985886 GTAACATTTT
1 AAAAAATTAT
*
6985896 ATAAAAATCAT
1 A-AAAAATTAT
6985907 AAAAAATTAT
1 AAAAAATTAT
6985917 AAAA
1 AAAA
6985921 TGTATCAAAA
Statistics
Matches: 83, Mismatches: 17, Indels: 18
0.70 0.14 0.15
Matches are distributed among these distances:
8 18 0.22
9 20 0.24
10 26 0.31
11 19 0.23
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.31
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:6986259 original size:20 final size:20
Alignment explanation
Indices: 6986228--6986279 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
6986218 TTTCTATATA
*
6986228 TTTTATAATTTTTACA-CTT
1 TTTTAAAATTTTTACAGCTT
6986247 TTTGTAAAA-TTTTACAGCTT
1 TTT-TAAAATTTTTACAGCTT
*
6986267 TTTTATAATTTTT
1 TTTTAAAATTTTT
6986280 TTACCATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
19 14 0.50
20 14 0.50
ACGTcount: A:0.27, C:0.08, G:0.04, T:0.62
Consensus pattern (20 bp):
TTTTAAAATTTTTACAGCTT
Found at i:6986336 original size:29 final size:27
Alignment explanation
Indices: 6986303--6986364 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 27
6986293 ATTTTTTCTA
*
6986303 ATTTTGAATAAATTTTAAATATTTTTAT
1 ATTTTTAATAAATTTTAAATATTTTT-T
* *
6986331 ATTTTTATTAAAATTT-AATAATTTTTT
1 ATTTTTAATAAATTTTAAAT-ATTTTTT
6986358 ATTTTTA
1 ATTTTTA
6986365 TCAGTTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 11 0.37
28 19 0.63
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (27 bp):
ATTTTTAATAAATTTTAAATATTTTTT
Found at i:6987378 original size:17 final size:17
Alignment explanation
Indices: 6987345--6987398 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
6987335 TGACTTAGGT
*
6987345 TAATTTTTTTATTTATTA
1 TAATTTTTTT-TATATTA
6987363 TAATTTTTTTTATATT-
1 TAATTTTTTTTATATTA
* *
6987379 TATATTTATATTATATTA
1 TA-ATTTTTTTTATATTA
6987397 TA
1 TA
6987399 TTAATTTTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
16 2 0.06
17 17 0.55
18 12 0.39
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TAATTTTTTTTATATTA
Found at i:6989807 original size:24 final size:24
Alignment explanation
Indices: 6989780--6989865 Score: 163
Period size: 24 Copynumber: 3.6 Consensus size: 24
6989770 CTTTCCCTAA
*
6989780 ACCATCATTCCCAAGGCCATCCAT
1 ACCATCATTCCCAAAGCCATCCAT
6989804 ACCATCATTCCCAAAGCCATCCAT
1 ACCATCATTCCCAAAGCCATCCAT
6989828 ACCATCATTCCCAAAGCCATCCAT
1 ACCATCATTCCCAAAGCCATCCAT
6989852 ACCATCATTCCCAA
1 ACCATCATTCCCAA
6989866 GGCCTGGGGT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.33, C:0.42, G:0.05, T:0.21
Consensus pattern (24 bp):
ACCATCATTCCCAAAGCCATCCAT
Found at i:6991021 original size:31 final size:31
Alignment explanation
Indices: 6990983--6991045 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
6990973 TAAGACATAA
6990983 AGTGGTGCTTAATTTTTTTATATTGTCTTTG
1 AGTGGTGCTTAATTTTTTTATATTGTCTTTG
* *
6991014 AGTGGTGCTTATTTTTTTTATATTGTGTTTG
1 AGTGGTGCTTAATTTTTTTATATTGTCTTTG
6991045 A
1 A
6991046 TTTCATTGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.16, C:0.05, G:0.21, T:0.59
Consensus pattern (31 bp):
AGTGGTGCTTAATTTTTTTATATTGTCTTTG
Found at i:6994763 original size:12 final size:12
Alignment explanation
Indices: 6994742--6994866 Score: 56
Period size: 12 Copynumber: 9.8 Consensus size: 12
6994732 AAAAACAAAA
*
6994742 TGATTAAAAACT
1 TGATGAAAAACT
* *
6994754 TGATGGAAAATT
1 TGATGAAAAACT
*
6994766 TTATGAAAAGACT
1 TGATGAAAA-ACT
6994779 TGATGAAAAACT
1 TGATGAAAAACT
* *
6994791 TTA-AAAAGAACT
1 TGATGAAA-AACT
*
6994803 TGCT-ACAAAACT
1 TGATGA-AAAACT
*
6994815 TGATAAAAAAAACT
1 TGAT--GAAAAACT
*
6994829 TGGTAATTAAAAACT
1 T-G--ATGAAAAACT
*
6994844 TGATAAAAGAACT
1 TGATGAAA-AACT
*
6994857 AGATGAAAAA
1 TGATGAAAAA
6994867 TACTTGAAGA
Statistics
Matches: 86, Mismatches: 16, Indels: 22
0.69 0.13 0.18
Matches are distributed among these distances:
11 3 0.03
12 41 0.48
13 22 0.26
14 8 0.09
15 10 0.12
17 2 0.02
ACGTcount: A:0.52, C:0.08, G:0.14, T:0.26
Consensus pattern (12 bp):
TGATGAAAAACT
Found at i:6994803 original size:24 final size:25
Alignment explanation
Indices: 6994750--6994866 Score: 87
Period size: 25 Copynumber: 4.6 Consensus size: 25
6994740 AATGATTAAA
* *
6994750 AACTTGATGGAAAATTTTATGAAAAG
1 AACTTGATGAAAAACTTTAT-AAAAG
6994776 -ACTTGATGAAAAACTTTA-AAAAG
1 AACTTGATGAAAAACTTTATAAAAG
* * *
6994799 AACTTGCT-ACAAAACTTGATAAAAAA
1 AACTTGATGA-AAAACTTTAT-AAAAG
* *
6994825 AACTTGGTAATTAAAAACTTGATAAAAG
1 AACTT-G--ATGAAAAACTTTATAAAAG
*
6994853 AACTAGATGAAAAA
1 AACTTGATGAAAAA
6994867 TACTTGAAGA
Statistics
Matches: 74, Mismatches: 9, Indels: 17
0.74 0.09 0.17
Matches are distributed among these distances:
23 6 0.08
24 14 0.19
25 23 0.31
26 9 0.12
27 2 0.03
28 8 0.11
29 11 0.15
30 1 0.01
ACGTcount: A:0.52, C:0.09, G:0.14, T:0.26
Consensus pattern (25 bp):
AACTTGATGAAAAACTTTATAAAAG
Found at i:6994842 original size:15 final size:14
Alignment explanation
Indices: 6994809--6994873 Score: 60
Period size: 14 Copynumber: 4.6 Consensus size: 14
6994799 AACTTGCTAC
6994809 AAAACTTGATAAAA
1 AAAACTTGATAAAA
* *
6994823 AAAACTTGGTAATTA
1 AAAACTTGATAA-AA
6994838 AAAACTTGAT-AAA
1 AAAACTTGATAAAA
* * *
6994851 AGAACTAGATGAAA
1 AAAACTTGATAAAA
*
6994865 AATACTTGA
1 AAAACTTGA
6994874 AGAAAGAAAA
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
13 9 0.22
14 21 0.52
15 10 0.25
ACGTcount: A:0.55, C:0.08, G:0.12, T:0.25
Consensus pattern (14 bp):
AAAACTTGATAAAA
Found at i:6994892 original size:21 final size:21
Alignment explanation
Indices: 6994862--6994901 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
6994852 GAACTAGATG
*
6994862 AAAAATACTTGAA-GAAAGAAA
1 AAAAACACTT-AATGAAAGAAA
6994883 AAAAACACTTAATGAAAGA
1 AAAAACACTTAATGAAAGA
6994902 CTTAATTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.65, C:0.07, G:0.12, T:0.15
Consensus pattern (21 bp):
AAAAACACTTAATGAAAGAAA
Found at i:6996219 original size:7 final size:6
Alignment explanation
Indices: 6996203--6996260 Score: 55
Period size: 6 Copynumber: 9.3 Consensus size: 6
6996193 TGTTTCCTGC
* *
6996203 AAAAAT AAAAAT GAAAAT -AAAAT AAAATAGT AAAAAT AAATAAT AATAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAA-A-T AAAAAT AAA-AAT AAAAAT
*
6996253 AATAAT AA
1 AAAAAT AA
6996261 TAGGAAAATT
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
5 5 0.11
6 29 0.63
7 7 0.15
8 5 0.11
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.22
Consensus pattern (6 bp):
AAAAAT
Found at i:6996240 original size:19 final size:18
Alignment explanation
Indices: 6996204--6996260 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 18
6996194 GTTTCCTGCA
*
6996204 AAAATAAAA-ATGAAAAT
1 AAAATAAAATATAAAAAT
6996221 AAAATAAAATAGTAAAAAT
1 AAAATAAAATA-TAAAAAT
*
6996240 -AAATAATAATAATAATAAT
1 AAAATAA-AAT-ATAAAAAT
6996259 AA
1 AA
6996261 TAGGAAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
17 9 0.27
18 7 0.21
19 15 0.45
20 2 0.06
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.23
Consensus pattern (18 bp):
AAAATAAAATATAAAAAT
Found at i:6999732 original size:13 final size:12
Alignment explanation
Indices: 6999688--6999813 Score: 63
Period size: 12 Copynumber: 9.8 Consensus size: 12
6999678 AAAAACGAAA
*
6999688 TGATTAAAAACT
1 TGATGAAAAACT
* *
6999700 TGATGGAAAATT
1 TGATGAAAAACT
*
6999712 TTATGAAAAGACT
1 TGATGAAAA-ACT
6999725 TGATGAAAAACT
1 TGATGAAAAACT
* **
6999737 ATAAAAAAAAACT
1 -TGATGAAAAACT
* *
6999750 TGCTGCAAAACT
1 TGATGAAAAACT
*
6999762 TGATAAAGAAAACT
1 TGAT-GA-AAAACT
*
6999776 TGGTAATTAAAAACT
1 T-G--ATGAAAAACT
*
6999791 TGATAAAAGAACT
1 TGATGAAA-AACT
*
6999804 AGATGAAAAA
1 TGATGAAAAA
6999814 TACCTGAAGA
Statistics
Matches: 84, Mismatches: 22, Indels: 16
0.69 0.18 0.13
Matches are distributed among these distances:
12 36 0.43
13 29 0.35
14 8 0.10
15 8 0.10
16 1 0.01
17 2 0.02
ACGTcount: A:0.52, C:0.08, G:0.14, T:0.25
Consensus pattern (12 bp):
TGATGAAAAACT
Found at i:6999773 original size:14 final size:13
Alignment explanation
Indices: 6999756--6999813 Score: 53
Period size: 14 Copynumber: 4.2 Consensus size: 13
6999746 AACTTGCTGC
6999756 AAAACTTGATAAA
1 AAAACTTGATAAA
*
6999769 GAAAACTTGGTAATTA
1 -AAAACTTGATAA--A
6999785 AAAACTTGATAAA
1 AAAACTTGATAAA
* *
6999798 AGAACTAGATGAAA
1 AAAACTTGAT-AAA
6999812 AA
1 AA
6999814 TACCTGAAGA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
13 9 0.25
14 15 0.42
15 11 0.31
16 1 0.03
ACGTcount: A:0.57, C:0.07, G:0.14, T:0.22
Consensus pattern (13 bp):
AAAACTTGATAAA
Found at i:7000680 original size:26 final size:26
Alignment explanation
Indices: 7000627--7000681 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 26
7000617 TAATGTAATG
*
7000627 ATTTTCATTATGATTTAATATAATAT
1 ATTTTCATTATGAGTTAATATAATAT
* *
7000653 ATTTTCATATATTAGTTAATTTAAATAT
1 ATTTTCAT-TATGAGTTAATAT-AATAT
7000681 A
1 A
7000682 ATATAAGTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 8 0.33
27 10 0.42
28 6 0.25
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.53
Consensus pattern (26 bp):
ATTTTCATTATGAGTTAATATAATAT
Found at i:7004007 original size:15 final size:15
Alignment explanation
Indices: 7003987--7004021 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
7003977 TTATTTTTAG
7003987 TCTCACCAAAATTAA
1 TCTCACCAAAATTAA
7004002 TCTCACCAAAATTAA
1 TCTCACCAAAATTAA
7004017 TCTCA
1 TCTCA
7004022 ACATTGATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.43, C:0.29, G:0.00, T:0.29
Consensus pattern (15 bp):
TCTCACCAAAATTAA
Found at i:7016915 original size:14 final size:14
Alignment explanation
Indices: 7016898--7016943 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
7016888 TAAATAGCAC
7016898 ATAATAAATTGAAA
1 ATAATAAATTGAAA
*
7016912 ATAAT---TTTAAA
1 ATAATAAATTGAAA
*
7016923 AAAATAAATTGAAA
1 ATAATAAATTGAAA
7016937 ATAATAA
1 ATAATAA
7016944 TAATGATAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 6
0.71 0.11 0.17
Matches are distributed among these distances:
11 9 0.36
14 16 0.64
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.30
Consensus pattern (14 bp):
ATAATAAATTGAAA
Found at i:7016960 original size:23 final size:23
Alignment explanation
Indices: 7016926--7016969 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
7016916 TTTTAAAAAA
7016926 ATAAATTGAAAATAATAATAATG
1 ATAAATTGAAAATAATAATAATG
*
7016949 ATAAACTT-AAAATAATGATAA
1 ATAAA-TTGAAAATAATAATAA
7016970 CCTAAAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (23 bp):
ATAAATTGAAAATAATAATAATG
Found at i:7016977 original size:16 final size:17
Alignment explanation
Indices: 7016942--7016980 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
7016932 TGAAAATAAT
*
7016942 AATAATGATAAACTTAA
1 AATAATGATAAACCTAA
7016959 AATAATGAT-AACCTAA
1 AATAATGATAAACCTAA
7016975 AATAAT
1 AATAAT
7016981 AATATATGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 12 0.57
17 9 0.43
ACGTcount: A:0.59, C:0.08, G:0.05, T:0.28
Consensus pattern (17 bp):
AATAATGATAAACCTAA
Found at i:7019227 original size:18 final size:18
Alignment explanation
Indices: 7019167--7019220 Score: 74
Period size: 18 Copynumber: 3.0 Consensus size: 18
7019157 CTATTATAAC
*
7019167 TATT-TATATATACCATCT
1 TATTATATATATA-TATCT
*
7019185 TATTATATATTTATATCT
1 TATTATATATATATATCT
7019203 TATTATATATATATATCT
1 TATTATATATATATATCT
7019221 CTTTATAGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
18 25 0.78
19 7 0.22
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.56
Consensus pattern (18 bp):
TATTATATATATATATCT
Done.