Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 25 of 221
Found at i:7019378 original size:30 final size:29
Alignment explanation
Indices: 7019342--7019398 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 29
7019332 TTTTATATAT
7019342 ATATACATACTTACACTATTTTATTTTACG
1 ATATACATACTTACA-TATTTTATTTTACG
*
7019372 ATATACATACTTATATATTTTATTTTA
1 ATATACATACTTACATATTTTATTTTA
7019399 TGTAATATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 12 0.46
30 14 0.54
ACGTcount: A:0.35, C:0.12, G:0.02, T:0.51
Consensus pattern (29 bp):
ATATACATACTTACATATTTTATTTTACG
Found at i:7022868 original size:21 final size:22
Alignment explanation
Indices: 7022835--7022875 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
7022825 TTATTCTTTT
* *
7022835 ATTCTTTCTTTCA-AATCATTC
1 ATTCATTCATTCATAATCATTC
7022856 ATTCATTCATTCATAATCAT
1 ATTCATTCATTCATAATCAT
7022876 ACTGTACAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.29, C:0.22, G:0.00, T:0.49
Consensus pattern (22 bp):
ATTCATTCATTCATAATCATTC
Found at i:7025734 original size:50 final size:49
Alignment explanation
Indices: 7025614--7026156 Score: 340
Period size: 50 Copynumber: 10.9 Consensus size: 49
7025604 ATACCATAGT
* * * ** *
7025614 TTGCAATTCAAAAGATTGAGGCCACAACGGAAAATCTTACCTTCCCAGGCGA
1 TTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTA-CTTCCC-GAC-A
*** * * **
7025666 -TGCAGCGGAACAGATTGAAGCTACAACGCCGAATCTCGCTTCCTCGACA
1 TTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCC-CGACA
* * * **
7025715 TTGCAATTTAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCC-AGG
1 TTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCGACA
* * * * *
7025763 TGATGCAGTGGAACAGATTGAAGCTACAACGACGAATCTCACTTCCCCGACA
1 T--TGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTT-CCCGACA
* * ** **
7025815 TTGCAATTTAAAAGATTGAAGCCACAACGGAAAATCTTACTTCCC-AGG
1 TTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCGACA
** * * **
7025863 TGATGC-AGCGAAATAGATTGAAGCTACGATGGCGAATCACACTTCCCCGACA
1 T--TGCAATTGAAA-AGATTGAAGCTACAACGGCGAATCTTACTT-CCCGACA
* * * * *
7025915 TTGCAATTTAAAATATTGAAGCCACAATGGCGAATCTTACTTCCCAGGCA
1 TTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCC-GACA
* * * * * *
7025965 ATGCAGTGGAACAGATTGAAGCTACAATGGCGAATCTTGCTTCCCCGACA
1 TTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTT-CCCGACA
* * * * *
7026015 TTGCAATTTAAAAGATTGAGGCCACAACGGCGGATCTTACTTCCCAGGCA
1 TTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCC-GACA
* *** * * * * *
7026065 ATGCAGCAGAACAGATTGAAGCTACGATGGTGAATCTCGT-TTTCCCGACA
1 TTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCT--TACTTCCCGACA
* * *
7026115 TTGCAATTAAAAAGATTGAAGCTACAATGGCTAATCTTACTT
1 TTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTT
7026157 TCCAGGCGGT
Statistics
Matches: 362, Mismatches: 111, Indels: 39
0.71 0.22 0.08
Matches are distributed among these distances:
48 5 0.01
49 17 0.05
50 290 0.80
51 45 0.12
52 5 0.01
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (49 bp):
TTGCAATTGAAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCGACA
Found at i:7025789 original size:100 final size:100
Alignment explanation
Indices: 7025614--7026185 Score: 748
Period size: 100 Copynumber: 5.7 Consensus size: 100
7025604 ATACCATAGT
* * **
7025614 TTGCAATTCAAAAGATTGAGGCCACAACGGAAAATCTTACCTTCCCAGGCGATGCAGCGGAACAG
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTA-CTTCCCAGGCGATGCAGCGGAACAG
* * *
7025679 ATTGAAGCTACAACGCCGAATCTCGCTTCCTCGACA
65 ATTGAAGCTACAATGGCGAATCTCGCTTCCCCGACA
* * *
7025715 TTGCAATTTAAAAGATTGAAGCCACAACAGCGAATCTTACTTCCCAGGTGATGCAGTGGAACAGA
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGA
* * *
7025780 TTGAAGCTACAACGACGAATCTCACTTCCCCGACA
66 TTGAAGCTACAATGGCGAATCTCGCTTCCCCGACA
** * * *
7025815 TTGCAATTTAAAAGATTGAAGCCACAACGGAAAATCTTACTTCCCAGGTGATGCAGCGAAATAGA
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGA
* * *
7025880 TTGAAGCTACGATGGCGAATCACACTTCCCCGACA
66 TTGAAGCTACAATGGCGAATCTCGCTTCCCCGACA
* * * *
7025915 TTGCAATTTAAAATATTGAAGCCACAATGGCGAATCTTACTTCCCAGGCAATGCAGTGGAACAGA
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGA
*
7025980 TTGAAGCTACAATGGCGAATCTTGCTTCCCCGACA
66 TTGAAGCTACAATGGCGAATCTCGCTTCCCCGACA
* * * *
7026015 TTGCAATTTAAAAGATTGAGGCCACAACGGCGGATCTTACTTCCCAGGCAATGCAGCAGAACAGA
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGA
* * * *
7026080 TTGAAGCTACGATGGTGAATCTCGTTTTCCCGACA
66 TTGAAGCTACAATGGCGAATCTCGCTTCCCCGACA
* * * * * * * * *
7026115 TTGCAATTAAAAAGATTGAAGCTACAATGGCTAATCTTACTTTCCAGGCGGTGCAACGAAATAGA
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGA
7026180 TTGAAG
66 TTGAAG
7026186 TTGCACAACG
Statistics
Matches: 414, Mismatches: 57, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
100 380 0.92
101 34 0.08
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (100 bp):
TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGA
TTGAAGCTACAATGGCGAATCTCGCTTCCCCGACA
Found at i:7027439 original size:16 final size:16
Alignment explanation
Indices: 7027418--7027448 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7027408 GTTTTCCAAC
7027418 TTTATTTATCTATTTA
1 TTTATTTATCTATTTA
*
7027434 TTTATTTTTCTATTT
1 TTTATTTATCTATTT
7027449 TTGATTTGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTATTTATCTATTTA
Found at i:7032636 original size:16 final size:16
Alignment explanation
Indices: 7032615--7032645 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7032605 CCAGAGAGAA
7032615 TTTTTTCTTTCTTTTG
1 TTTTTTCTTTCTTTTG
*
7032631 TTTTTTTTTTCTTTT
1 TTTTTTCTTTCTTTT
7032646 CAATGCCCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.10, G:0.03, T:0.87
Consensus pattern (16 bp):
TTTTTTCTTTCTTTTG
Found at i:7033296 original size:18 final size:17
Alignment explanation
Indices: 7033275--7033321 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
7033265 CTATTATAAC
7033275 TATTTATATATAGCATCT
1 TATTTATATATA-CATCT
* *
7033293 TATTATATATTTATATCT
1 TATT-TATATATACATCT
7033311 TA-TTATATATA
1 TATTTATATATA
7033322 TCTATATATC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
16 7 0.28
17 1 0.04
18 10 0.40
19 7 0.28
ACGTcount: A:0.36, C:0.06, G:0.02, T:0.55
Consensus pattern (17 bp):
TATTTATATATACATCT
Found at i:7041954 original size:18 final size:18
Alignment explanation
Indices: 7041931--7041972 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
7041921 GCAATGTTTT
*
7041931 TAAAAAGTACTTTTGAGA
1 TAAAAAGCACTTTTGAGA
*
7041949 TAAAAAGCGCTTTTGAGA
1 TAAAAAGCACTTTTGAGA
7041967 TAAAAA
1 TAAAAA
7041973 CATTCTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.48, C:0.07, G:0.17, T:0.29
Consensus pattern (18 bp):
TAAAAAGCACTTTTGAGA
Found at i:7053785 original size:30 final size:33
Alignment explanation
Indices: 7053713--7053788 Score: 86
Period size: 30 Copynumber: 2.4 Consensus size: 33
7053703 ATTTTAAATT
* *
7053713 AATAAAAATAAATTTATATTTTAATTCTTTTAAA
1 AATAATAA-AAATTTATATTTTAATTCTCTTAAA
7053747 AATAATAAAAATTTA-A-TTTAA-TCTCTTAAA
1 AATAATAAAAATTTATATTTTAATTCTCTTAAA
* *
7053777 ATTTATAAAAAT
1 AATAATAAAAAT
7053789 ATAAGATATT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
30 18 0.47
31 5 0.13
32 1 0.03
33 7 0.18
34 7 0.18
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (33 bp):
AATAATAAAAATTTATATTTTAATTCTCTTAAA
Found at i:7055073 original size:19 final size:19
Alignment explanation
Indices: 7055038--7055080 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
7055028 CAGAGGTAAT
*
7055038 CTTTTAAAATTTCTTTC-A
1 CTTTTAAAATTTATTTCTA
*
7055056 CTTTCTAAATTTTATTTCTA
1 CTTT-TAAAATTTATTTCTA
7055076 CTTTT
1 CTTTT
7055081 GTTGGTAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 4 0.19
19 12 0.57
20 5 0.24
ACGTcount: A:0.23, C:0.16, G:0.00, T:0.60
Consensus pattern (19 bp):
CTTTTAAAATTTATTTCTA
Found at i:7066376 original size:33 final size:33
Alignment explanation
Indices: 7066305--7066381 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 33
7066295 GTATATATAT
* * **
7066305 ATAAGACCATAGCTGGGCTATGGCATTCTGATG
1 ATAAGACCATAACTGGGCTATGGCATACAAATG
*
7066338 ATAAGACCATAACTGGGTTATGGCACTACAAATG
1 ATAAGACCATAACTGGGCTATGGCA-TACAAATG
7066372 -TAAGACCATA
1 ATAAGACCATA
7066382 GTTGGAATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
33 33 0.87
34 5 0.13
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (33 bp):
ATAAGACCATAACTGGGCTATGGCATACAAATG
Found at i:7073069 original size:27 final size:27
Alignment explanation
Indices: 7073047--7073448 Score: 427
Period size: 27 Copynumber: 15.0 Consensus size: 27
7073037 AAGGGTATAA
7073047 CAGTCATTTTACCCTATGGGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
* *
7073074 CGGTCATTTTACCCTATGAGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
* * *
7073101 CGGTCATTTTATCCTATGGGGTTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
*
7073128 CAGTCATTTTACCCTATGAGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
* * *
7073155 CGGTTATTTTACCCTATGAGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
* * *
7073182 C-GATCATTTTACTCTATTGAGGTATTT
1 CAG-TCATTTTACCCTATGGGGGTATTT
*
7073209 CAGTCATTCTACCCTATGGGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
* * *
7073236 C-GATCATTCTACCCCAT-AGGGTATTT
1 CAG-TCATTTTACCCTATGGGGGTATTT
* *
7073262 TAGTCATTTTACCCTAT-GGGGTTTTT
1 CAGTCATTTTACCCTATGGGGGTATTT
** *
7073288 TGGTAATTTTACCCTAT-GGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
* * *
7073314 CAATCATTCTACCCTATAGGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
* * * *
7073341 CGGTTATTTTACCTTATGGAGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
** * * *
7073368 TGGTTATTTTACCTTATTGGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
7073395 CAGTCATTTTACCCTATGGGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
* * *
7073422 TAGTTATTTTACCCTATGGCGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
7073449 TGGTCGCCTC
Statistics
Matches: 317, Mismatches: 53, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
26 64 0.20
27 252 0.79
28 1 0.00
ACGTcount: A:0.19, C:0.17, G:0.20, T:0.44
Consensus pattern (27 bp):
CAGTCATTTTACCCTATGGGGGTATTT
Found at i:7077417 original size:32 final size:32
Alignment explanation
Indices: 7077381--7077447 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
7077371 TCCCCTTTGC
* *
7077381 TATAGCATTTCCAGTTATTTACTAATTCCATA
1 TATAGCATTTCAAATTATTTACTAATTCCATA
7077413 TATAGCATTTCAAATTATTTACTAATTCCATA
1 TATAGCATTTCAAATTATTTACTAATTCCATA
7077445 TAT
1 TAT
7077448 TACTCATCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.34, C:0.16, G:0.04, T:0.45
Consensus pattern (32 bp):
TATAGCATTTCAAATTATTTACTAATTCCATA
Found at i:7078881 original size:44 final size:43
Alignment explanation
Indices: 7078817--7078975 Score: 155
Period size: 42 Copynumber: 3.7 Consensus size: 43
7078807 AATGTGTTAT
7078817 CGTGTAAGACCATGTCTGGGACATTGGCATCGATTTTAGATTTA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGATTTTAGA-TTA
* * * *
7078861 TGTGTAAGACCATGTCTGGGACATTGACGTCG--TATATGATTA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGATTTTA-GATTA
* * *
7078903 CGTGTAAGAACC-TGTCTGTGACAATGGCATTGATATTT-GATTA
1 CGTGTAAG-ACCATGTCTGGGACATTGGCATCGAT-TTTAGATTA
* * * *
7078946 CATGTAAGACCACGTCTAGGACGTTGGCAT
1 CGTGTAAGACCATGTCTGGGACATTGGCAT
7078976 TGTACGAGCT
Statistics
Matches: 92, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
42 31 0.34
43 30 0.33
44 29 0.32
45 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACATTGGCATCGATTTTAGATTA
Found at i:7081514 original size:53 final size:52
Alignment explanation
Indices: 7081446--7081609 Score: 303
Period size: 52 Copynumber: 3.2 Consensus size: 52
7081436 TTTAAAATAC
7081446 TTTTAAAATAATTTTTTTTATTTTTTATTTTTAAAATAATTTTTTTAATGTT
1 TTTTAAAATAATTTTTTTTATTTTTTATTTTTAAAATAATTTTTTTAATGTT
7081498 TTTTAAAATAATTTTTTTTATTTTTTATTTTTAAAATAATTTTTTTAATGTT
1 TTTTAAAATAATTTTTTTTATTTTTTATTTTTAAAATAATTTTTTTAATGTT
7081550 TTTTAAAATAATTTTTTTTATTTTTTTATTTTTAAAATAA-TTTTTTAATGTT
1 TTTTAAAATAATTTTTTTTA-TTTTTTATTTTTAAAATAATTTTTTTAATGTT
*
7081602 TATTAAAA
1 TTTTAAAA
7081610 AATGGGTCAG
Statistics
Matches: 110, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
52 91 0.83
53 19 0.17
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (52 bp):
TTTTAAAATAATTTTTTTTATTTTTTATTTTTAAAATAATTTTTTTAATGTT
Found at i:7085965 original size:44 final size:43
Alignment explanation
Indices: 7085901--7086059 Score: 157
Period size: 42 Copynumber: 3.7 Consensus size: 43
7085891 AATGTGTTAT
7085901 CGTGTAAGACCATGTCTAGGACATTGGCATCGATTTTAGATTTA
1 CGTGTAAGACCATGTCTAGGACATTGGCATCGATTTTAGA-TTA
* * * *
7085945 TGTGTAAGACCATGTCTAGGACATTGACGTCG--TATATGATTA
1 CGTGTAAGACCATGTCTAGGACATTGGCATCGATTTTA-GATTA
* *
7085987 CGTGTAAGAACC-TGTCT-GTGACAATGGCATTGATATTT-GATTA
1 CGTGTAAG-ACCATGTCTAG-GACATTGGCATCGAT-TTTAGATTA
* * *
7086030 CATGTAAGACCACGTCTAGGACGTTGGCAT
1 CGTGTAAGACCATGTCTAGGACATTGGCAT
7086060 TGTACGAGCT
Statistics
Matches: 93, Mismatches: 14, Indels: 17
0.75 0.11 0.14
Matches are distributed among these distances:
41 1 0.01
42 30 0.32
43 30 0.32
44 30 0.32
45 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTAGGACATTGGCATCGATTTTAGATTA
Found at i:7086061 original size:43 final size:43
Alignment explanation
Indices: 7085901--7086059 Score: 173
Period size: 43 Copynumber: 3.7 Consensus size: 43
7085891 AATGTGTTAT
7085901 CGTGTAAGACCATGTCTAGGACATTGGCATCGAT-TTTAGATTTA
1 CGTGTAAGACCATGTCTAGGACATTGGCATCGATATTT-GA-TTA
* * * *
7085945 TGTGTAAGACCATGTCTAGGACATTGACGTCG-TATATGATTA
1 CGTGTAAGACCATGTCTAGGACATTGGCATCGATATTTGATTA
* *
7085987 CGTGTAAGAACC-TGTCT-GTGACAATGGCATTGATATTTGATTA
1 CGTGTAAG-ACCATGTCTAG-GACATTGGCATCGATATTTGATTA
* * *
7086030 CATGTAAGACCACGTCTAGGACGTTGGCAT
1 CGTGTAAGACCATGTCTAGGACATTGGCAT
7086060 TGTACGAGCT
Statistics
Matches: 95, Mismatches: 14, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
41 1 0.01
42 27 0.28
43 35 0.37
44 32 0.34
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTAGGACATTGGCATCGATATTTGATTA
Found at i:7090288 original size:24 final size:26
Alignment explanation
Indices: 7090260--7090308 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 26
7090250 GTCTTGGATA
7090260 AATCAAAATTCAACT-AGA-AAAAAT
1 AATCAAAATTCAACTAAGAGAAAAAT
* *
7090284 AATCAAAGTTTAACTAAGAGAAAAA
1 AATCAAAATTCAACTAAGAGAAAAA
7090309 AATTGAGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 13 0.62
25 3 0.14
26 5 0.24
ACGTcount: A:0.61, C:0.10, G:0.08, T:0.20
Consensus pattern (26 bp):
AATCAAAATTCAACTAAGAGAAAAAT
Found at i:7092667 original size:13 final size:14
Alignment explanation
Indices: 7092648--7092687 Score: 57
Period size: 13 Copynumber: 2.9 Consensus size: 14
7092638 CAACGGCATA
7092648 GAAATAATATAAAC
1 GAAATAATATAAAC
7092662 -AAATAA-ATAAAC
1 GAAATAATATAAAC
7092674 GAAATGAATATAAA
1 GAAAT-AATATAAA
7092688 AAACAATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 6 0.26
13 10 0.43
14 2 0.09
15 5 0.22
ACGTcount: A:0.68, C:0.05, G:0.07, T:0.20
Consensus pattern (14 bp):
GAAATAATATAAAC
Found at i:7093449 original size:23 final size:24
Alignment explanation
Indices: 7093405--7093460 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
7093395 CAAATTGAAA
* *
7093405 TTAAAAATAAATTAAAGGTTAATT
1 TTAAAAATAAAATAAAGCTTAATT
7093429 TTAAAAATAAAATAAA-CTTAATT
1 TTAAAAATAAAATAAAGCTTAATT
*
7093452 GTAAAAATA
1 TTAAAAATA
7093461 TTAAAAGGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 14 0.48
24 15 0.52
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (24 bp):
TTAAAAATAAAATAAAGCTTAATT
Found at i:7094946 original size:44 final size:44
Alignment explanation
Indices: 7094895--7095012 Score: 123
Period size: 44 Copynumber: 2.7 Consensus size: 44
7094885 GATGTGATCT
* *
7094895 ACTCTACTG-CATCTTTAGAGAGATAAGATCT-GTGGTTTTAATCC
1 ACTCTACTGCCA-CTTCAGAGAGATAAGAT-TAGTGGCTTTAATCC
* *
7094939 ACTCTACTGCCACTTCAGAGAGATAGGATTAGTGGCTTTAATCT
1 ACTCTACTGCCACTTCAGAGAGATAAGATTAGTGGCTTTAATCC
* * * * *
7094983 GCTCCATTGCAACTTCAGGGAGATAAGATT
1 ACTCTACTGCCACTTCAGAGAGATAAGATT
7095013 CGCCATCTTC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
43 1 0.02
44 59 0.95
45 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.32
Consensus pattern (44 bp):
ACTCTACTGCCACTTCAGAGAGATAAGATTAGTGGCTTTAATCC
Found at i:7095876 original size:169 final size:169
Alignment explanation
Indices: 7095390--7096023 Score: 880
Period size: 169 Copynumber: 3.8 Consensus size: 169
7095380 TTACGACTTC
* * * * * * ** *
7095390 AATCTTTTTCACTGTAATGCCAAAGAGATAGGATTCGCTACCCACAGCTTCAATCCACTCCACTT
1 AATCTGTTCCACTATAATGCCAAAGAGATAGAATTCACTACCCACAGCTTTAATCTGCTTCACTT
* * * ** * * *
7095455 CAGCTAATCCAAGTCTTAATGCCAGGGAGATAAGATTCTCTGCCCTCAGCTTTAATCTGCTCCAC
66 CAGCTATTTCAACTCTTAACACCAAGGAGATAAGATTCGCTGCCCTCAGCTTTAATCTGCTCCGC
*
7095520 TGCAACACTAGGGAAACAAGATTCACTACCTTTAGCTTT
131 TGCAACACTAGGGAAACAAGATTCGCTACCTTTAGCTTT
* *
7095559 AATCTGTACCACTATAATGCCAAAGAGATAGAATTCGCTACCCACAGCTTTAATCTG-TTC-CAT
1 AATCTGTTCCACTATAATGCCAAAGAGATAGAATTCACTACCCACAGCTTTAATCTGCTTCAC-T
*
7095622 TCAGCTATTTCAACTCTTAACA-CAAGGGAGATAAGATTCGCTGCCCTCAGCTTTAATATGCTCC
65 TCAGCTATTTCAACTCTTAACACCAA-GGAGATAAGATTCGCTGCCCTCAGCTTTAATCTGCTCC
7095686 GCTGCAACACTAGGGAAACAAGATTCGCTACCTTTAGCTTT
129 GCTGCAACACTAGGGAAACAAGATTCGCTACCTTTAGCTTT
* * * *
7095727 AATCCGTTCCACTACAATGCCAAAGAGATAGGATTCACTGCCCACAGCTTTAATCTGCTTCACTT
1 AATCTGTTCCACTATAATGCCAAAGAGATAGAATTCACTACCCACAGCTTTAATCTGCTTCACTT
* * *
7095792 CAGCTATTTCAACTATTAACACCAAGGAGATAAGATTTGCTGCCCTCAGCTTTAATTTGCTCCGC
66 CAGCTATTTCAACTCTTAACACCAAGGAGATAAGATTCGCTGCCCTCAGCTTTAATCTGCTCCGC
* *
7095857 TGCAACGCTAAGGAAACAAGATTCGCTACCTTTAGCTTT
131 TGCAACACTAGGGAAACAAGATTCGCTACCTTTAGCTTT
* **
7095896 AATTTGTTCCACTATAATGCCAAAGAGATAGAATTCACTGGCCACAGCTTTAATCTGC-TCTACT
1 AATCTGTTCCACTATAATGCCAAAGAGATAGAATTCACTACCCACAGCTTTAATCTGCTTC-ACT
* * * *
7095960 TCAGCTATTTCAAGTCTTAACGCCAGGGAGATAAGATTCGCTGCCCTTAGCTTTAATCTGCTCC
65 TCAGCTATTTCAACTCTTAACACCAAGGAGATAAGATTCGCTGCCCTCAGCTTTAATCTGCTCC
7096024 ACTATAACGT
Statistics
Matches: 417, Mismatches: 42, Indels: 12
0.89 0.09 0.03
Matches are distributed among these distances:
167 3 0.01
168 148 0.35
169 262 0.63
170 4 0.01
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (169 bp):
AATCTGTTCCACTATAATGCCAAAGAGATAGAATTCACTACCCACAGCTTTAATCTGCTTCACTT
CAGCTATTTCAACTCTTAACACCAAGGAGATAAGATTCGCTGCCCTCAGCTTTAATCTGCTCCGC
TGCAACACTAGGGAAACAAGATTCGCTACCTTTAGCTTT
Found at i:7096834 original size:12 final size:12
Alignment explanation
Indices: 7096817--7096841 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7096807 TGACAACAAA
7096817 ATCTGAAGGGAT
1 ATCTGAAGGGAT
7096829 ATCTGAAGGGAT
1 ATCTGAAGGGAT
7096841 A
1 A
7096842 GTCTCAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.32, T:0.24
Consensus pattern (12 bp):
ATCTGAAGGGAT
Found at i:7100217 original size:30 final size:30
Alignment explanation
Indices: 7100181--7100254 Score: 148
Period size: 30 Copynumber: 2.5 Consensus size: 30
7100171 GGCTCATCAT
7100181 AGTAAATTTCTTTAGAAAACTTTACTAGAA
1 AGTAAATTTCTTTAGAAAACTTTACTAGAA
7100211 AGTAAATTTCTTTAGAAAACTTTACTAGAA
1 AGTAAATTTCTTTAGAAAACTTTACTAGAA
7100241 AGTAAATTTCTTTA
1 AGTAAATTTCTTTA
7100255 CATAAAATGG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.39
Consensus pattern (30 bp):
AGTAAATTTCTTTAGAAAACTTTACTAGAA
Found at i:7102007 original size:13 final size:14
Alignment explanation
Indices: 7101989--7102037 Score: 57
Period size: 13 Copynumber: 3.5 Consensus size: 14
7101979 AACGGCATAG
7101989 AAATAATATAAAC-
1 AAATAATATAAACA
7102002 AAATAA-ATAAACA
1 AAATAATATAAACA
*
7102015 AAATGAATATAAAAA
1 AAAT-AATATAAACA
7102030 ACAATAAT
1 A-AATAAT
7102038 CCATGACATG
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
12 6 0.19
13 10 0.32
14 2 0.06
15 10 0.32
16 3 0.10
ACGTcount: A:0.71, C:0.06, G:0.02, T:0.20
Consensus pattern (14 bp):
AAATAATATAAACA
Found at i:7104022 original size:21 final size:20
Alignment explanation
Indices: 7103985--7104023 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
7103975 TTTAAAGGTA
*
7103985 AATTATATTAGTATTTATTT
1 AATTATATTAATATTTATTT
*
7104005 AATTATTATTAATTTTTAT
1 AATTA-TATTAATATTTAT
7104024 CAAAATGGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (20 bp):
AATTATATTAATATTTATTT
Found at i:7116353 original size:22 final size:23
Alignment explanation
Indices: 7116325--7116373 Score: 82
Period size: 22 Copynumber: 2.2 Consensus size: 23
7116315 GTCTGCCAAA
*
7116325 CATATTATCACTTGTTTATTAT-
1 CATATTATCACATGTTTATTATG
7116347 CATATTATCACATGTTTATTATG
1 CATATTATCACATGTTTATTATG
7116370 CATA
1 CATA
7116374 ATGTAAAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 21 0.84
23 4 0.16
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.49
Consensus pattern (23 bp):
CATATTATCACATGTTTATTATG
Found at i:7121478 original size:44 final size:44
Alignment explanation
Indices: 7121430--7121517 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 44
7121420 AAAACTTTTA
*
7121430 AAAAAATAAAT-TTTTTTGA-TTAAAAATAAAAAAATAAAACAATT
1 AAAAAATAAATCTTATTT-ACTTAAAAAT-AAAAAATAAAACAATT
* *
7121474 AAAAAATGAATCTTATTTACTTAAAAATAAAAAATAAAATAATT
1 AAAAAATAAATCTTATTTACTTAAAAATAAAAAATAAAACAATT
7121518 GAATTGAATT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
44 26 0.67
45 13 0.33
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.32
Consensus pattern (44 bp):
AAAAAATAAATCTTATTTACTTAAAAATAAAAAATAAAACAATT
Found at i:7121649 original size:12 final size:12
Alignment explanation
Indices: 7121632--7121656 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7121622 GGTGTTCATT
7121632 CGGTTAACCGAC
1 CGGTTAACCGAC
7121644 CGGTTAACCGAC
1 CGGTTAACCGAC
7121656 C
1 C
7121657 CGAAATAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:7121830 original size:9 final size:9
Alignment explanation
Indices: 7121817--7121892 Score: 100
Period size: 9 Copynumber: 8.4 Consensus size: 9
7121807 TTTGGTTAAA
*
7121817 AATTAACCA
1 AATTAACCG
7121826 AATTAACCG
1 AATTAACCG
*
7121835 AATTACCCG
1 AATTAACCG
*
7121844 AATTACCCG
1 AATTAACCG
7121853 AATTAACCG
1 AATTAACCG
7121862 AATT-ACCTG
1 AATTAACC-G
7121871 AATTAACCG
1 AATTAACCG
*
7121880 AATTAACCA
1 AATTAACCG
7121889 AATT
1 AATT
7121893 GAATCACTAC
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
8 3 0.05
9 55 0.90
10 3 0.05
ACGTcount: A:0.43, C:0.24, G:0.08, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:7121856 original size:27 final size:27
Alignment explanation
Indices: 7121817--7121892 Score: 116
Period size: 27 Copynumber: 2.8 Consensus size: 27
7121807 TTTGGTTAAA
*
7121817 AATTAACCAAATTAACCGAATTACCCG
1 AATTAACCGAATTAACCGAATTACCCG
* *
7121844 AATTACCCGAATTAACCGAATTACCTG
1 AATTAACCGAATTAACCGAATTACCCG
*
7121871 AATTAACCGAATTAACCAAATT
1 AATTAACCGAATTAACCGAATT
7121893 GAATCACTAC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.43, C:0.24, G:0.08, T:0.25
Consensus pattern (27 bp):
AATTAACCGAATTAACCGAATTACCCG
Found at i:7122039 original size:18 final size:18
Alignment explanation
Indices: 7121999--7122042 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
7121989 TAATTTTATG
**
7121999 ATTGGGTTGGGTTAGGTA
1 ATTGGGTTGGGTTAAATA
7122017 ATTGGGTTGGGTTAAATA
1 ATTGGGTTGGGTTAAATA
*
7122035 CTTGGGTT
1 ATTGGGTT
7122043 TAGATTGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.18, C:0.02, G:0.39, T:0.41
Consensus pattern (18 bp):
ATTGGGTTGGGTTAAATA
Found at i:7126027 original size:43 final size:43
Alignment explanation
Indices: 7125966--7126053 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
7125956 GTTAGAGGAC
7125966 TAAAAAATAAATTTGACCAAAAAGACAATTGATACTTATTAGT
1 TAAAAAATAAATTTGACCAAAAAGACAATTGATACTTATTAGT
7126009 TAAAAAATAAATTTGACCAAAAAGACAATTGATACTTATTAGT
1 TAAAAAATAAATTTGACCAAAAAGACAATTGATACTTATTAGT
7126052 TA
1 TA
7126054 GAATGTGTAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.31
Consensus pattern (43 bp):
TAAAAAATAAATTTGACCAAAAAGACAATTGATACTTATTAGT
Found at i:7142214 original size:24 final size:24
Alignment explanation
Indices: 7142187--7142287 Score: 85
Period size: 24 Copynumber: 4.2 Consensus size: 24
7142177 GCGTTAAGAG
*
7142187 TCTTTGCTTGACATGTATTAGGCA
1 TCTTTGCTTAACATGTATTAGGCA
* * * *
7142211 TCTTTACTTGACATGTGTTATGCA
1 TCTTTGCTTAACATGTATTAGGCA
* * * * *
7142235 CCTTTGCATAACATGTGTTAAGAA
1 TCTTTGCTTAACATGTATTAGGCA
* * *
7142259 TATTTGCTTAACATGCATTTGGCA
1 TCTTTGCTTAACATGTATTAGGCA
7142283 TCTTT
1 TCTTT
7142288 ATACGACATG
Statistics
Matches: 59, Mismatches: 18, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 59 1.00
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.43
Consensus pattern (24 bp):
TCTTTGCTTAACATGTATTAGGCA
Found at i:7142296 original size:72 final size:72
Alignment explanation
Indices: 7142159--7142298 Score: 192
Period size: 72 Copynumber: 1.9 Consensus size: 72
7142149 AGAATGTTGG
* * * * *
7142159 TGCACCTTTGCAAAACATGCGTTAAGAGTCTTTGCTTGACATGTATTAGGCATCTTTACTTGACA
1 TGCACCTTTGCAAAACATGCGTTAAGAATATTTGCTTAACATGCATTAGGCATCTTTACTCGACA
7142224 TGTGTTA
66 TGTGTTA
* * *
7142231 TGCACCTTTGCATAACATGTGTTAAGAATATTTGCTTAACATGCATTTGGCATCTTTA-TACGAC
1 TGCACCTTTGCAAAACATGCGTTAAGAATATTTGCTTAACATGCATTAGGCATCTTTACT-CGAC
7142295 ATGT
65 ATGT
7142299 CTTAGTATTT
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
71 1 0.02
72 58 0.98
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (72 bp):
TGCACCTTTGCAAAACATGCGTTAAGAATATTTGCTTAACATGCATTAGGCATCTTTACTCGACA
TGTGTTA
Found at i:7142784 original size:23 final size:23
Alignment explanation
Indices: 7142758--7142801 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
7142748 ACCATATTTG
*
7142758 TAATATCCCGAAAATTACTACTA
1 TAATACCCCGAAAATTACTACTA
*
7142781 TAATACCCCGAAAATTGCTAC
1 TAATACCCCGAAAATTACTAC
7142802 AGTAAGAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.41, C:0.25, G:0.07, T:0.27
Consensus pattern (23 bp):
TAATACCCCGAAAATTACTACTA
Found at i:7149449 original size:23 final size:23
Alignment explanation
Indices: 7149295--7149456 Score: 164
Period size: 23 Copynumber: 6.9 Consensus size: 23
7149285 CGTTATTGTG
* *
7149295 AAAGAATGAATTGATGAAAATGT
1 AAAGGATGAATTGACGAAAATGT
* *
7149318 AAAGGATGACTTGATGGAAAATGT
1 AAAGGATGAATTGA-CGAAAATGT
* * *
7149342 AAAGGAGGAACTGATGGAAAATGT
1 AAAGGATGAATTGA-CGAAAATGT
* * **
7149366 AAAGGAGGAACTGACGGTAATGT
1 AAAGGATGAATTGACGAAAATGT
*
7149389 AAAGGATGAATTGAC-AGTAATGT
1 AAAGGATGAATTGACGA-AAATGT
*
7149412 AAAGGATGAATTGACGACAATGT
1 AAAGGATGAATTGACGAAAATGT
7149435 AAAGGATGAATTGACGACAAAT
1 AAAGGATGAATTGACGA-AAAT
7149457 TGTCTAAGTA
Statistics
Matches: 121, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
23 74 0.61
24 47 0.39
ACGTcount: A:0.45, C:0.06, G:0.28, T:0.22
Consensus pattern (23 bp):
AAAGGATGAATTGACGAAAATGT
Found at i:7154975 original size:16 final size:16
Alignment explanation
Indices: 7154956--7154989 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
7154946 AAATATGTGC
7154956 TGGACTAAATTGAATA
1 TGGACTAAATTGAATA
7154972 TGGACTAAATTGAATA
1 TGGACTAAATTGAATA
7154988 TG
1 TG
7154990 AATTATATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.41, C:0.06, G:0.21, T:0.32
Consensus pattern (16 bp):
TGGACTAAATTGAATA
Found at i:7154999 original size:16 final size:16
Alignment explanation
Indices: 7154959--7155002 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
7154949 TATGTGCTGG
*
7154959 ACTAAATTGAATATGG
1 ACTAAATTGAATATGA
7154975 ACTAAATTGAATATGA
1 ACTAAATTGAATATGA
* *
7154991 ATTATATTGAAT
1 ACTAAATTGAAT
7155003 TAAGTTAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.45, C:0.05, G:0.14, T:0.36
Consensus pattern (16 bp):
ACTAAATTGAATATGA
Found at i:7155365 original size:25 final size:25
Alignment explanation
Indices: 7155325--7155459 Score: 207
Period size: 25 Copynumber: 5.4 Consensus size: 25
7155315 CACAACTCTT
* *
7155325 ATGAGCTTCTCGATATTTAGCTCAC
1 ATGAGCTTCCCAATATTTAGCTCAC
7155350 ATGAGCTTCCCAATATTTAGCTCAC
1 ATGAGCTTCCCAATATTTAGCTCAC
7155375 ATGAGCTTCCCAATATTTAGCTCAC
1 ATGAGCTTCCCAATATTTAGCTCAC
*
7155400 ATGAGCTTCCCGATATTTAGCTCAC
1 ATGAGCTTCCCAATATTTAGCTCAC
* * **
7155425 ATGAGCTTTCCAATACTTAGCTTGC
1 ATGAGCTTCCCAATATTTAGCTCAC
7155450 ATGAGCTTCC
1 ATGAGCTTCC
7155460 TGTTATTCAG
Statistics
Matches: 101, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 101 1.00
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.33
Consensus pattern (25 bp):
ATGAGCTTCCCAATATTTAGCTCAC
Found at i:7155471 original size:25 final size:25
Alignment explanation
Indices: 7155452--7155509 Score: 116
Period size: 25 Copynumber: 2.3 Consensus size: 25
7155442 TAGCTTGCAT
7155452 GAGCTTCCTGTTATTCAGCTCAAAA
1 GAGCTTCCTGTTATTCAGCTCAAAA
7155477 GAGCTTCCTGTTATTCAGCTCAAAA
1 GAGCTTCCTGTTATTCAGCTCAAAA
7155502 GAGCTTCC
1 GAGCTTCC
7155510 CGTTTATAGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (25 bp):
GAGCTTCCTGTTATTCAGCTCAAAA
Found at i:7155472 original size:50 final size:50
Alignment explanation
Indices: 7155325--7155484 Score: 203
Period size: 50 Copynumber: 3.2 Consensus size: 50
7155315 CACAACTCTT
* * * *
7155325 ATGAGCTTCTCGATATTTAGCTCACATGAGCTTCCCAATATTTAGCTCAC
1 ATGAGCTTCCCAATACTTAGCTCACATGAGCTTCCCGATATTTAGCTCAC
*
7155375 ATGAGCTTCCCAATATTTAGCTCACATGAGCTTCCCGATATTTAGCTCAC
1 ATGAGCTTCCCAATACTTAGCTCACATGAGCTTCCCGATATTTAGCTCAC
* ** * * * *
7155425 ATGAGCTTTCCAATACTTAGCTTGCATGAGCTTCCTGTTATTCAGCTCAA
1 ATGAGCTTCCCAATACTTAGCTCACATGAGCTTCCCGATATTTAGCTCAC
*
7155475 AAGAGCTTCC
1 ATGAGCTTCC
7155485 TGTTATTCAG
Statistics
Matches: 97, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 97 1.00
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (50 bp):
ATGAGCTTCCCAATACTTAGCTCACATGAGCTTCCCGATATTTAGCTCAC
Found at i:7155472 original size:75 final size:75
Alignment explanation
Indices: 7155325--7155510 Score: 228
Period size: 75 Copynumber: 2.5 Consensus size: 75
7155315 CACAACTCTT
* *
7155325 ATGAGCTTCTCGATATTTAGCTCACATGAGCTTCCCAATATTTAGCTCACATGAGCTTCCCAATA
1 ATGAGCTTCCCGATATTTAGCTCACATGAGCTTCCCAATACTTAGCTCACATGAGCTTCCCAATA
* *
7155390 TTTAGCTCAC
66 TTCAGCTCAA
* ** ***
7155400 ATGAGCTTCCCGATATTTAGCTCACATGAGCTTTCCAATACTTAGCTTGCATGAGCTTCCTGTTA
1 ATGAGCTTCCCGATATTTAGCTCACATGAGCTTCCCAATACTTAGCTCACATGAGCTTCCCAATA
7155465 TTCAGCTCAA
66 TTCAGCTCAA
* * * * * *
7155475 AAGAGCTTCCTGTTATTCAGCTCAAAAGAGCTTCCC
1 ATGAGCTTCCCGATATTTAGCTCACATGAGCTTCCC
7155511 GTTTATAGCT
Statistics
Matches: 94, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
75 94 1.00
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (75 bp):
ATGAGCTTCCCGATATTTAGCTCACATGAGCTTCCCAATACTTAGCTCACATGAGCTTCCCAATA
TTCAGCTCAA
Found at i:7160358 original size:6 final size:6
Alignment explanation
Indices: 7160347--7160377 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
7160337 CTTCACTAGT
7160347 TCTATA TCTATA TCTATA TCTATA TCTATA T
1 TCTATA TCTATA TCTATA TCTATA TCTATA T
7160378 TGTTTATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (6 bp):
TCTATA
Found at i:7162987 original size:37 final size:37
Alignment explanation
Indices: 7162917--7163006 Score: 116
Period size: 37 Copynumber: 2.5 Consensus size: 37
7162907 AGCTACAAAG
7162917 GCCGAATGC--ACATAT-T-CACTTATACCCACCTAT
1 GCCGAATGCATACATATATACACTTATACCCACCTAT
* * *
7162950 GCCGAATGCATACATATATACACTTATATCTATCTAT
1 GCCGAATGCATACATATATACACTTATACCCACCTAT
*
7162987 GCCGAATGCATACAAATATA
1 GCCGAATGCATACATATATA
7163007 TATCCAGCTA
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
33 9 0.18
35 6 0.12
36 1 0.02
37 33 0.67
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.29
Consensus pattern (37 bp):
GCCGAATGCATACATATATACACTTATACCCACCTAT
Found at i:7163390 original size:41 final size:41
Alignment explanation
Indices: 7163215--7163383 Score: 293
Period size: 41 Copynumber: 4.1 Consensus size: 41
7163205 AATTCATCAT
*
7163215 ATTCGGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
* * *
7163256 ATTTAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
*
7163297 ATTCATATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
7163338 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
7163379 ATTCA
1 ATTCA
7163384 ATTCACCAAT
Statistics
Matches: 119, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 119 1.00
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (41 bp):
ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
Found at i:7163648 original size:19 final size:17
Alignment explanation
Indices: 7163604--7163649 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
7163594 TTGTTCGATC
7163604 CACATATATATATATTA
1 CACATATATATATATTA
* *
7163621 CACACATATATATATTTG
1 CACATATATATATA-TTA
7163639 CACAT-TATATA
1 CACATATATATA
7163650 AACACAACCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 19 0.76
18 6 0.24
ACGTcount: A:0.43, C:0.15, G:0.02, T:0.39
Consensus pattern (17 bp):
CACATATATATATATTA
Found at i:7170348 original size:37 final size:37
Alignment explanation
Indices: 7170299--7170377 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
7170289 TCGAATGCAC
* *
7170299 ATATTCACTTATACCCACCTATGCCGAATGCATACAT
1 ATATACACTTATACCCACCTATGCCGAATGCATACAA
* * * *
7170336 ATATACACTTATATCTATCTATGCCGAATGTATACAA
1 ATATACACTTATACCCACCTATGCCGAATGCATACAA
7170373 ATATA
1 ATATA
7170378 TATCCACCTA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.37, C:0.23, G:0.08, T:0.33
Consensus pattern (37 bp):
ATATACACTTATACCCACCTATGCCGAATGCATACAA
Found at i:7170763 original size:41 final size:41
Alignment explanation
Indices: 7170588--7170756 Score: 284
Period size: 41 Copynumber: 4.1 Consensus size: 41
7170578 AATTCATCAT
* *
7170588 ATTCGGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
7170629 ATTTAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
7170670 ATTCATATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
7170711 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
7170752 ATTCA
1 ATTCA
7170757 ATTCACCAAT
Statistics
Matches: 118, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 118 1.00
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (41 bp):
ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
Found at i:7173374 original size:3 final size:3
Alignment explanation
Indices: 7173366--7173405 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
7173356 TAATAGCTCC
7173366 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
7173406 ATGTTATTGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:7181540 original size:19 final size:20
Alignment explanation
Indices: 7181516--7181556 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
7181506 AGATCATAAA
*
7181516 AAAAATT-ATAAAAATGTTT
1 AAAAATTAATAAAAATATTT
7181535 AAAAATTAATAAAAATATTT
1 AAAAATTAATAAAAATATTT
7181555 AA
1 AA
7181557 TTTTTTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (20 bp):
AAAAATTAATAAAAATATTT
Found at i:7181547 original size:10 final size:9
Alignment explanation
Indices: 7181516--7181646 Score: 50
Period size: 10 Copynumber: 13.6 Consensus size: 9
7181506 AGATCATAAA
7181516 AAAAATTAT
1 AAAAATTAT
*
7181525 AAAAATGTTT
1 AAAAAT-TAT
7181535 AAAAATTAAT
1 AAAAATT-AT
*
7181545 AAAAATATTT
1 AAAAAT-TAT
***
7181555 AATTTTTTTAT
1 AA--AAATTAT
*
7181566 AAAAATTCTT
1 AAAAATT-AT
7181576 AAAAA-TATT
1 AAAAATTA-T
* *
7181585 AGAAATGATT
1 AAAAATTA-T
7181595 AAAAA-TAT
1 AAAAATTAT
**
7181603 TGAAATTGAT
1 AAAAATT-AT
7181613 ATAAAATTAT
1 A-AAAATTAT
7181623 AAAAATTAT
1 AAAAATTAT
*
7181632 AAAAAATCAT
1 -AAAAATTAT
7181642 AAAAA
1 AAAAA
7181647 CTTGAATTGG
Statistics
Matches: 89, Mismatches: 21, Indels: 24
0.66 0.16 0.18
Matches are distributed among these distances:
8 4 0.04
9 30 0.34
10 44 0.49
11 10 0.11
12 1 0.01
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.36
Consensus pattern (9 bp):
AAAAATTAT
Found at i:7181619 original size:19 final size:19
Alignment explanation
Indices: 7181574--7181618 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 19
7181564 ATAAAAATTC
7181574 TTAAAAATATTAGAAATGA
1 TTAAAAATATTAGAAATGA
7181593 TTAAAAATATT-GAAATTGA
1 TTAAAAATATTAGAAA-TGA
7181612 TATAAAA
1 T-TAAAA
7181619 TTATAAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.17
19 15 0.62
20 5 0.21
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (19 bp):
TTAAAAATATTAGAAATGA
Found at i:7181637 original size:19 final size:20
Alignment explanation
Indices: 7181605--7181651 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
7181595 AAAAATATTG
* *
7181605 AAATTGATATAAAATTATAA
1 AAATTGATAAAAAATCATAA
7181625 AAATT-ATAAAAAATCATAA
1 AAATTGATAAAAAATCATAA
7181644 AAACTTGA
1 AAA-TTGA
7181652 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 7 0.30
21 1 0.04
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (20 bp):
AAATTGATAAAAAATCATAA
Found at i:7182263 original size:39 final size:40
Alignment explanation
Indices: 7182229--7182309 Score: 109
Period size: 39 Copynumber: 2.1 Consensus size: 40
7182219 AGTTTTTATG
7182229 ATTTTATAAAATTTTA-AATATT-TTAGATATGTTTTATCA
1 ATTTTATAAAATTTTATAAT-TTATTAGATATGTTTTATCA
*
7182268 ATTTTATATAATTTTATAATTTATTAGAT-T-TTTTAT-A
1 ATTTTATAAAATTTTATAATTTATTAGATATGTTTTATCA
7182305 ATTTT
1 ATTTT
7182310 TATGAATTTA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
37 6 0.15
38 6 0.15
39 18 0.46
40 9 0.23
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.59
Consensus pattern (40 bp):
ATTTTATAAAATTTTATAATTTATTAGATATGTTTTATCA
Found at i:7182311 original size:47 final size:47
Alignment explanation
Indices: 7182260--7182358 Score: 114
Period size: 47 Copynumber: 2.1 Consensus size: 47
7182250 TTTAGATATG
*
7182260 TTTTATCAATTT-TATATAATTTTATAATTTAT-TA-GATTTTTTATAAT
1 TTTTATCAATTTATAT-TAATTTAAT-ATTTATGTATGA-TTTTTATAAT
* * *
7182307 TTTTATGAATTTATATTAATTTAATATTTTTGTATGATTTTTCTAAT
1 TTTTATCAATTTATATTAATTTAATATTTATGTATGATTTTTATAAT
7182354 TTTTA
1 TTTTA
7182359 AATATTTTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
46 5 0.11
47 35 0.78
48 5 0.11
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (47 bp):
TTTTATCAATTTATATTAATTTAATATTTATGTATGATTTTTATAAT
Found at i:7182317 original size:10 final size:10
Alignment explanation
Indices: 7182212--7182328 Score: 56
Period size: 10 Copynumber: 12.2 Consensus size: 10
7182202 TTTCAATAAA
*
7182212 TTTTATGAGT
1 TTTTATGAAT
7182222 TTTTATG-A-
1 TTTTATGAAT
* *
7182230 TTTTATAAAA
1 TTTTATGAAT
7182240 TTTTA--AAT
1 TTTTATGAAT
7182248 ATTTTA-GATAT
1 -TTTTATGA-AT
*
7182259 GTTTTATCAAT
1 -TTTTATGAAT
7182270 TTTATAT-AA-
1 TTT-TATGAAT
7182279 TTTTAT-AAT
1 TTTTATGAAT
*
7182288 TTATTA-GATT
1 TT-TTATGAAT
7182298 TTTTAT-AAT
1 TTTTATGAAT
7182307 TTTTATGAAT
1 TTTTATGAAT
* *
7182317 TTATATTAAT
1 TTTTATGAAT
7182327 TT
1 TT
7182329 AATATTTTTG
Statistics
Matches: 86, Mismatches: 9, Indels: 24
0.72 0.08 0.20
Matches are distributed among these distances:
8 13 0.15
9 22 0.26
10 38 0.44
11 12 0.14
12 1 0.01
ACGTcount: A:0.33, C:0.01, G:0.06, T:0.60
Consensus pattern (10 bp):
TTTTATGAAT
Found at i:7189638 original size:24 final size:24
Alignment explanation
Indices: 7189585--7189632 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
7189575 GACAGATTAA
7189585 AAATTTTATTACAAATAGACACAT
1 AAATTTTATTACAAATAGACACAT
*
7189609 AAATTTTATTATAAATAGACACAT
1 AAATTTTATTACAAATAGACACAT
7189633 GTATTTATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.35
Consensus pattern (24 bp):
AAATTTTATTACAAATAGACACAT
Found at i:7192307 original size:94 final size:94
Alignment explanation
Indices: 7192146--7192322 Score: 259
Period size: 94 Copynumber: 1.9 Consensus size: 94
7192136 CTTGGGGTAA
* * *
7192146 TTGGCTGCTCATATCAAGATAAGTACTTTGTCACTTATGTCTTGTTTATGGTTAATACTTATTAA
1 TTGGCTGCTCATATCAAGATAAGTACTTGGTCACTTATGTCTTGTTGATGGTTAATACTTAATAA
*
7192211 GGTACTTAGTTGCTTAAGGGAATTTGTGG
66 GGTACTTAGTTACTTAAGGGAATTTGTGG
* *
7192240 TTGGCTGCTCATATCAAGATATA-TACTTGGTTACTTTTGTCGTT-TTGATGGTTAATACTTAAT
1 TTGGCTGCTCATATCAAGATA-AGTACTTGGTCACTTATGTC-TTGTTGATGGTTAATACTTAAT
*
7192303 AAGGTACTTTGTTACTTAAG
64 AAGGTACTTAGTTACTTAAG
7192323 AGACTTTATG
Statistics
Matches: 74, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
94 71 0.96
95 3 0.04
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.44
Consensus pattern (94 bp):
TTGGCTGCTCATATCAAGATAAGTACTTGGTCACTTATGTCTTGTTGATGGTTAATACTTAATAA
GGTACTTAGTTACTTAAGGGAATTTGTGG
Found at i:7192442 original size:221 final size:218
Alignment explanation
Indices: 7192039--7192460 Score: 514
Period size: 221 Copynumber: 1.9 Consensus size: 218
7192029 ACATACATAT
*
7192039 ATATATACTTGGTTACTTATTTTCTTTGATGGTTAATACTTAAGAAGGTACGTAGTTAACTGATA
1 ATATATACTTGGTTACTTATTGTCTTTGATGGTTAATACTTAAGAAGGTACGTAGTTAACT-ATA
* ** * * *
7192104 AAAATTTTTGGGTGGTAAAATTGAATCTATTTCTTGGGGTAATTGGCTGCTCATATCAAGATAAG
65 AAAATTTATGGGTGGTAAAATTGAATAAATTTCGTGAGGTAATTGGCTGCTCATATCAAGATAAA
* * * * **
7192169 TACTTTGTCACTTATGTCTTGTTTATGGTTAATACTTATTAAGGTACTTAGTTGCTTAAGGGAAT
130 TACTTGGTCACTTATGTCGTGTTGATGGTTAATACTTATTAAGGTACTTAGTTACTTAAGAAAAT
7192234 TTGTGGTTGGCTGCTCATATCAAG
195 TTGTGGTTGGCTGCTCATATCAAG
* * *
7192258 ATATATACTTGGTTACTT-TTGTCGTTTTGATGGTTAATACTTAATAAGGTACTTTGTT-ACT-T
1 ATATATACTTGGTTACTTATTGTC--TTTGATGGTTAATACTTAAGAAGGTACGTAGTTAACTAT
* * *
7192320 AAGAGACTTTATGGGTGGTAGAATTGAATAAATTT-GT-AGGTAATTTGCTGCTCATATCAAGAT
64 AA-A-AATTTATGGGTGGTAAAATTGAATAAATTTCGTGAGGTAATTGGCTGCTCATATCAAG--
* * *
7192383 ATATATATACTTGGTTACTT-TTTGCGTGTTGATGGTTAATACTTTTTAAGGTACTTAGTTACTT
125 ATA-A-ATACTTGGTCACTTATGT-CGTGTTGATGGTTAATACTTATTAAGGTACTTAGTTACTT
7192447 AAGAAAATTTGTGG
187 AAGAAAATTTGTGG
7192461 GTGGAATTGG
Statistics
Matches: 172, Mismatches: 22, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
217 25 0.15
218 6 0.03
219 49 0.28
220 33 0.19
221 59 0.34
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (218 bp):
ATATATACTTGGTTACTTATTGTCTTTGATGGTTAATACTTAAGAAGGTACGTAGTTAACTATAA
AAATTTATGGGTGGTAAAATTGAATAAATTTCGTGAGGTAATTGGCTGCTCATATCAAGATAAAT
ACTTGGTCACTTATGTCGTGTTGATGGTTAATACTTATTAAGGTACTTAGTTACTTAAGAAAATT
TGTGGTTGGCTGCTCATATCAAG
Found at i:7192489 original size:104 final size:101
Alignment explanation
Indices: 7192349--7192667 Score: 325
Period size: 95 Copynumber: 3.1 Consensus size: 101
7192339 AGAATTGAAT
* * * *
7192349 AAATTTGTAGGT--AATTTGCTGCTCATATCAAGATATATATATACTTGGTTACTT-TTTGCGTG
1 AAATTTGTGGGTGGAATTGGCTGCTCATATCAA-ATATATATATA-TTGGTTACTTATGT-CCTG
**
7192411 TTGATGGTTAATACTTTTTAAGGTACTTAGTTACTTAAGA
63 TTGATGGTTAATACTTCATAAGGTACTTAGTTACTT-AGA
* *
7192451 AAATTTGTGGGTGGAATTGGCTGCTCATACCAATATATATATGTATATGTTTTGTTACTTATGTC
1 AAATTTGTGGGTGGAATTGGCTGCTCATATCAA-ATATATA--TATA---TTGGTTACTTATGTC
*
7192516 TTGTTGATGGTTAATACTTCATAAGGTACTTAGTTACTT-G-
60 CTGTTGATGGTTAATACTTCATAAGGTACTTAGTTACTTAGA
* * *
7192556 -AATTTGTGGGTGG--TTGGCTGCTAATATC-AAGATATATAT-TTGGTTTACTTATGTCCTTTT
1 AAATTTGTGGGTGGAATTGGCTGCTCATATCAAATATATATATATTGG-TTACTTATGTCCTGTT
*
7192616 GATGGTTAATACTTCATAAGGTAATTAGTTACTTCAGA
65 GATGGTTAATACTTCATAAGGTACTTAGTTACTT-AGA
* *
7192654 TAATTTTTGGGTGG
1 AAATTTGTGGGTGG
7192668 TAGAAGTGAA
Statistics
Matches: 187, Mismatches: 18, Indels: 27
0.81 0.08 0.12
Matches are distributed among these distances:
94 3 0.02
95 47 0.25
97 1 0.01
98 3 0.02
99 12 0.06
100 6 0.03
101 1 0.01
102 24 0.13
104 37 0.20
106 5 0.03
108 46 0.25
109 2 0.01
ACGTcount: A:0.26, C:0.10, G:0.20, T:0.44
Consensus pattern (101 bp):
AAATTTGTGGGTGGAATTGGCTGCTCATATCAAATATATATATATTGGTTACTTATGTCCTGTTG
ATGGTTAATACTTCATAAGGTACTTAGTTACTTAGA
Found at i:7192819 original size:329 final size:323
Alignment explanation
Indices: 7192172--7192799 Score: 798
Period size: 329 Copynumber: 1.9 Consensus size: 323
7192162 AGATAAGTAC
* *
7192172 TTTGTCACTTATGTCTTGTTTATGGTTAATACTTATTAAGGTACTTAGTTGCTTAAGGGAATTTG
1 TTTGTCACTTATGTCTTGTTGATGGTTAATACTTATTAAGGTACTTAGTTACTT-A--GAATTTG
* * *
7192237 TGGTTGGCTGCTCATATCAAGATATATACTTGGTTACTTTTGTCGTTTTGATGGTTAATACTTAA
63 TGGTTGGCTGCTAATATCAAGATATATACTTGGTTACTTATGTCCTTTTGATGGTTAATACTTAA
* * * * **
7192302 TAAGGTACTTTGTTACTTAAGAGACTTTATGGGTGGTAGAATTGAATAAATTTGTAGGTAATTTG
128 TAAGGTAATTAGTTACTTAAGAGAATTTATGGGTGGTAGAAGTGAATAAATTTGTAGGTAATCGG
* * * **
7192367 CTGCTCATATCAAGATATATATATACTTGGTTACTTTTTGCGTGTTGATGGTTAATACTTTTTAA
193 CTGCTCATATCAAG--A-ATATACACTTGGTTACTTTGTGCGTATTGATGGTTAATACTTAATAA
** * **
7192432 GGTACTTAGTTACTTAAGAAAATTTGTGGGTGGAATTGGCTGCTCATACCAATATATATATGTAT
255 GGTACTTAGTTACTTAAGAAAATGCGGGGGTGGAATTGAATGCTCATACCAATATATATATGTAT
7192497 ATGT
320 ATGT
*
7192501 TTTGTTACTTATGTCTTGTTGATGGTTAATACTTCA-TAAGGTACTTAGTTACTT-GAATTTGTG
1 TTTGTCACTTATGTCTTGTTGATGGTTAATACTT-ATTAAGGTACTTAGTTACTTAGAA-TT-T-
*
7192564 GGTGGTTGGCTGCTAATATCAAGATATATATTTGGTTTACTTATGTCCTTTTGATGGTTAATACT
62 -GTGGTTGGCTGCTAATATCAAGATATATACTTGG-TTACTTATGTCCTTTTGATGGTTAATACT
* * * * *
7192629 TCATAAGGTAATTAGTTACTTCAGATAATTTTTGGGTGGTAGAAGTGAAT-AATTTGTGGGTAAT
125 TAATAAGGTAATTAGTTACTTAAGAGAATTTATGGGTGGTAGAAGTGAATAAATTTGTAGGTAAT
* * *
7192693 CGGCTGTTCATATCAAG-ATATGCACTTGGTTACTTATGT-CTTATTGATGGTTAATACTTAATA
190 CGGCTGCTCATATCAAGAATATACACTTGGTTACTT-TGTGCGTATTGATGGTTAATACTTAATA
* *
7192756 AGGTACTTAGTTACTTGAGAGAATGCGGGTGGTGGAATTGAATG
254 AGGTACTTAGTTACTTAAGAAAATGCGGG-GGTGGAATTGAATG
7192800 ACTTGTATCG
Statistics
Matches: 258, Mismatches: 33, Indels: 19
0.83 0.11 0.06
Matches are distributed among these distances:
325 63 0.24
326 16 0.06
327 1 0.00
329 108 0.42
330 70 0.27
ACGTcount: A:0.26, C:0.10, G:0.22, T:0.42
Consensus pattern (323 bp):
TTTGTCACTTATGTCTTGTTGATGGTTAATACTTATTAAGGTACTTAGTTACTTAGAATTTGTGG
TTGGCTGCTAATATCAAGATATATACTTGGTTACTTATGTCCTTTTGATGGTTAATACTTAATAA
GGTAATTAGTTACTTAAGAGAATTTATGGGTGGTAGAAGTGAATAAATTTGTAGGTAATCGGCTG
CTCATATCAAGAATATACACTTGGTTACTTTGTGCGTATTGATGGTTAATACTTAATAAGGTACT
TAGTTACTTAAGAAAATGCGGGGGTGGAATTGAATGCTCATACCAATATATATATGTATATGT
Found at i:7192879 original size:217 final size:216
Alignment explanation
Indices: 7192504--7193017 Score: 532
Period size: 217 Copynumber: 2.4 Consensus size: 216
7192494 TATATGTTTT
* * ** *
7192504 GTTACTTATGTCTTGTTGATGGTTAATACTTCATAAGGTACTTAGTTACTT--GAATTTGTG-GG
1 GTTACTTATGTCTTATTGATGGTTAATACTTAATAAGGTACTTAGTTACTTAGGAATGCGGGTGG
** *
7192566 TGG--TTGGCTGCTAATATCAAGATATATATTTGGTTTACTTATGTCCTTTTGATGGTTAATACT
66 TGGAATTGAATGCTAATATCAAGATATATATTTCGTTTACTTATGTCCTTTTGATGGTTAATA--
* * * *
7192629 TCATAAGGTAATTAGTTACTTCAGATAATTTTTGGGTGGTAGAAGT-GAAT-AATTTGTGGGTAA
129 -CAT-A-GCAATTAATTACTTAAGATAATTTTTGGGTGGTAGAA-TCGAATAAATTTCT-GGT--
* *
7192692 TCGGCTGTTCATATC-A-AGATATGCACTTG
187 TC-GCTGCTCACATCAACAGATATGCACTTG
7192721 GTTACTTATGTCTTATTGATGGTTAATACTTAATAAGGTACTTAGTTACTTGAGAGAATGCGGGT
1 GTTACTTATGTCTTATTGATGGTTAATACTTAATAAGGTACTTAGTTACTT-AG-GAATGCGGGT
** * **
7192786 GGTGGAATTGAATGACTTGTATCGAGATATATATTTCG-TTACTTATGTTGTTTTGATGGTTAAT
64 GGTGGAATTGAATG-CTAATATCAAGATATATATTTCGTTTACTTATGTCCTTTTGATGGTTAAT
* *
7192850 A-AT-GCATTTAATTACTTAAGATAATTTTTGGGTGGTAGAATCGAATAAAATTTCTGGTTCGTT
128 ACATAGCAATTAATTACTTAAGATAATTTTTGGGTGGTAGAATCGAAT-AAATTTCTGGTTCGCT
* *
7192913 GCTCACATCAACATATATGTACTTG
192 GCTCACATCAACAGATATGCACTTG
* **
7192938 GTTGCTTATGT-TGCTTCGATGGTTAATACTTAATAAGGTACTTAGTTACTTAAGGAAATTTGCG
1 GTTACTTATGTCTTATT-GATGGTTAATACTTAATAAGGTACTTAGTTACTT-AGG-AA--TGCG
7193002 GGTGGTGGAATTGAAT
61 GGTGGTGGAATTGAAT
7193018 AAGTTTTTCA
Statistics
Matches: 253, Mismatches: 27, Indels: 32
0.81 0.09 0.10
Matches are distributed among these distances:
215 9 0.04
216 8 0.03
217 145 0.57
218 3 0.01
219 26 0.10
220 2 0.01
221 6 0.02
222 5 0.02
224 30 0.12
225 19 0.08
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.41
Consensus pattern (216 bp):
GTTACTTATGTCTTATTGATGGTTAATACTTAATAAGGTACTTAGTTACTTAGGAATGCGGGTGG
TGGAATTGAATGCTAATATCAAGATATATATTTCGTTTACTTATGTCCTTTTGATGGTTAATACA
TAGCAATTAATTACTTAAGATAATTTTTGGGTGGTAGAATCGAATAAATTTCTGGTTCGCTGCTC
ACATCAACAGATATGCACTTG
Found at i:7197974 original size:7 final size:7
Alignment explanation
Indices: 7197962--7197997 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
7197952 TTGGAGACCC
7197962 TCCCTAG
1 TCCCTAG
7197969 TCCCTAG
1 TCCCTAG
7197976 TCCCTAG
1 TCCCTAG
7197983 TCCCTAG
1 TCCCTAG
7197990 TCCCTAG
1 TCCCTAG
7197997 T
1 T
7197998 ATTGTCCTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.14, C:0.42, G:0.14, T:0.31
Consensus pattern (7 bp):
TCCCTAG
Found at i:7199160 original size:40 final size:40
Alignment explanation
Indices: 7199115--7199192 Score: 122
Period size: 40 Copynumber: 1.9 Consensus size: 40
7199105 CTCAATTTCC
7199115 TCTCAATTTCCT-TCCAAATTTCTCTCAAATCCATATTTAA
1 TCTCAATTTCCTCT-CAAATTTCTCTCAAATCCATATTTAA
* *
7199155 TCTCAATTTCCTCTCAAATTTCTCTTAAATCCCTATTT
1 TCTCAATTTCCTCTCAAATTTCTCTCAAATCCATATTT
7199193 TTTAATTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
40 34 0.97
41 1 0.03
ACGTcount: A:0.27, C:0.28, G:0.00, T:0.45
Consensus pattern (40 bp):
TCTCAATTTCCTCTCAAATTTCTCTCAAATCCATATTTAA
Found at i:7201259 original size:222 final size:218
Alignment explanation
Indices: 7200813--7201406 Score: 717
Period size: 222 Copynumber: 2.7 Consensus size: 218
7200803 TTACGTGTCT
*
7200813 CCCTAAACCCTAAACCCTAACCCTAATCTAATTTTTAAAATTTTTTAATTAAATTACTCAAGTAA
1 CCCTAAA-CCT-AA-CCTAA-CCT-ATCTAATTTTTAAATTTTTTTAATTAAATTACTCAAGTAA
*
7200878 TCCTAAACCCTAATTTAATTGATTTTTTCTTAAAAATTAATAAACACGAAAACTAATCCAATTTT
61 CCCTAAACCCTAATTTAATTGATTTTTTCTTAAAAATTAATAAACACGAAAACTAATCCAATTTT
* * * * **
7200943 GACAAATTTATAAATATTTTAATTGACAAACCCTAAACTCTAAACCCTAATTTATTTAATTTTTC
126 GACAAATTTATAAATAATTTAATTGAAAAACCCT-AACTCTAAACCCTAATTTATTAAATCTTAA
*
7201008 CTTAAAAATCTTAACTTAAAAACACCCTAAA
190 CTTAAAAATC-TAACCTAAAAACACCCT-AA
7201039 CCCTAAACCTAACCTTAACCTTGATCTAATTTTTAAATTTTTTTAATTAAATTACTCAAGTAACC
1 CCCTAAACCTAACC-TAACC-T-ATCTAATTTTTAAATTTTTTTAATTAAATTACTCAAGTAACC
7201104 CTAAACCCTAATTTAATTGA-TTTTT-TTAAAAATTAATAAACACGAAAACTAATCCAATTTTGA
63 CTAAACCCTAATTTAATTGATTTTTTCTTAAAAATTAATAAACACGAAAACTAATCCAATTTTGA
* * *
7201167 AAAATTTATAAATAATTTAATTGAAAAACCCTAA-T-T------T-ATTTGGTT---T-TT-TCT
128 CAAATTTATAAATAATTTAATTGAAAAACCCTAACTCTAAACCCTAATTT-ATTAAATCTTAACT
*
7201218 TAAAAATCCTTAACTTAAAAACACCCTAAA
192 TAAAAAT-C-TAACCTAAAAACACCCT-AA
* *
7201248 CCCTAACCCTAA-C---CCTAATCTAATTTTTTAAATTTTTTAAATTAAATTACTCAAGTAACCC
1 CCCTAAACCTAACCTAACCT-ATCTAA-TTTTTAAATTTTTTTAATTAAATTACTCAAGTAACCC
* * *
7201309 TAAACCCTAATTTAATTGATTTTTTCTTAAAAAATAATAAACACAAAAACTAATCCAATTATGAC
64 TAAACCCTAATTTAATTGATTTTTTCTTAAAAATTAATAAACACGAAAACTAATCCAATTTTGAC
7201374 AAATTTATAAATAATTTAATT-AACAAACCCTAA
129 AAATTTATAAATAATTTAATTGAA-AAACCCTAA
7201407 ACTAGAGGTG
Statistics
Matches: 345, Mismatches: 15, Indels: 36
0.87 0.04 0.09
Matches are distributed among these distances:
203 7 0.02
204 57 0.17
205 7 0.02
206 65 0.19
208 10 0.03
209 35 0.10
210 1 0.00
212 4 0.01
213 3 0.01
219 1 0.00
220 1 0.00
221 2 0.01
222 67 0.19
223 9 0.03
224 66 0.19
225 3 0.01
226 7 0.02
ACGTcount: A:0.43, C:0.18, G:0.03, T:0.37
Consensus pattern (218 bp):
CCCTAAACCTAACCTAACCTATCTAATTTTTAAATTTTTTTAATTAAATTACTCAAGTAACCCTA
AACCCTAATTTAATTGATTTTTTCTTAAAAATTAATAAACACGAAAACTAATCCAATTTTGACAA
ATTTATAAATAATTTAATTGAAAAACCCTAACTCTAAACCCTAATTTATTAAATCTTAACTTAAA
AATCTAACCTAAAAACACCCTAA
Found at i:7201405 original size:206 final size:206
Alignment explanation
Indices: 7200984--7201406 Score: 658
Period size: 206 Copynumber: 2.0 Consensus size: 206
7200974 CCTAAACTCT
7200984 AAACCCTAATTTATTTAATTTTTCCTTAAAAATCTTAACTTAAAAACACCCTAAACCCTAAACCT
1 AAACCCTAATTTATTTAATTTTTCCTTAAAAATCTTAACTTAAAAACACCCTAAACCCTAAACC-
* * *
7201049 AACCTTAACCTTGATCTAATTTTTAAATTTTTTTAATTAAATTACTCAAGTAACCCTAAACCCTA
65 -ACCTTAACCCTAATCTAATTTTTAAATTTTTTAAATTAAATTACTCAAGTAACCCTAAACCCTA
* * *
7201114 ATTTAATTGATTTTTTTAAAAATTAATAAACACGAAAACTAATCCAATTTTGAAAAATTTATAAA
129 ATTTAATTGATTTTTTTAAAAAATAATAAACACAAAAACTAATCCAATTATGAAAAATTTATAAA
7201179 TAATTTAATTGAA
194 TAATTTAATTGAA
** *
7201192 AAACCCTAATTTATTTGGTTTTTTCTTAAAAATCCTTAACTTAAAAACACCCTAAACCCT-AA-C
1 AAACCCTAATTTATTTAATTTTTCCTTAAAAAT-CTTAACTTAAAAACACCCTAAACCCTAAACC
7201255 -CC-TAACCCTAATCTAATTTTTTAAATTTTTTAAATTAAATTACTCAAGTAACCCTAAACCCTA
65 ACCTTAACCCTAATCTAA-TTTTTAAATTTTTTAAATTAAATTACTCAAGTAACCCTAAACCCTA
*
7201318 ATTTAATTGATTTTTTCTTAAAAAATAATAAACACAAAAACTAATCCAATTATGACAAATTTATA
129 ATTTAATTGA-TTTTT-TTAAAAAATAATAAACACAAAAACTAATCCAATTATGAAAAATTTATA
7201383 AATAATTTAATT-AA
192 AATAATTTAATTGAA
7201397 CAAACCCTAA
1 -AAACCCTAA
7201407 ACTAGAGGTG
Statistics
Matches: 200, Mismatches: 10, Indels: 12
0.90 0.05 0.05
Matches are distributed among these distances:
203 12 0.06
204 57 0.28
205 7 0.04
206 65 0.32
207 1 0.00
208 32 0.16
209 26 0.13
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.37
Consensus pattern (206 bp):
AAACCCTAATTTATTTAATTTTTCCTTAAAAATCTTAACTTAAAAACACCCTAAACCCTAAACCA
CCTTAACCCTAATCTAATTTTTAAATTTTTTAAATTAAATTACTCAAGTAACCCTAAACCCTAAT
TTAATTGATTTTTTTAAAAAATAATAAACACAAAAACTAATCCAATTATGAAAAATTTATAAATA
ATTTAATTGAA
Found at i:7201601 original size:24 final size:26
Alignment explanation
Indices: 7201574--7201636 Score: 78
Period size: 24 Copynumber: 2.5 Consensus size: 26
7201564 GAATATATAA
7201574 TAAATATTTTTTATTC-TTTA-ATTT
1 TAAATATTTTTTATTCTTTTATATTT
7201598 TAAA-ATATTTTTATTCTTTTTATATTT
1 TAAATAT-TTTTTATTC-TTTTATATTT
*
7201625 AAAATATTTTTT
1 TAAATATTTTTT
7201637 TGGTGTTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
23 2 0.06
24 13 0.39
26 4 0.12
27 12 0.36
28 2 0.06
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (26 bp):
TAAATATTTTTTATTCTTTTATATTT
Found at i:7201607 original size:25 final size:27
Alignment explanation
Indices: 7201575--7201636 Score: 94
Period size: 25 Copynumber: 2.4 Consensus size: 27
7201565 AATATATAAT
7201575 AAATATTTTTTATTC-TTTAAT-TTTA
1 AAATATTTTTTATTCTTTTAATATTTA
*
7201600 AAATA-TTTTTATTCTTTTTATATTTA
1 AAATATTTTTTATTCTTTTAATATTTA
7201626 AAATATTTTTT
1 AAATATTTTTT
7201637 TGGTGTTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
24 9 0.27
25 10 0.30
26 9 0.27
27 5 0.15
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (27 bp):
AAATATTTTTTATTCTTTTAATATTTA
Found at i:7201646 original size:26 final size:26
Alignment explanation
Indices: 7201575--7201635 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
7201565 AATATATAAT
*
7201575 AAATATTTTTTATTCT-TTAAT-TTTA
1 AAATA-TTTTTATTCTGTTTATATTTA
*
7201600 AAATATTTTTATTCTTTTTATATTTA
1 AAATATTTTTATTCTGTTTATATTTA
7201626 AAATATTTTT
1 AAATATTTTT
7201636 TTGGTGTTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
24 10 0.30
25 9 0.27
26 14 0.42
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (26 bp):
AAATATTTTTATTCTGTTTATATTTA
Found at i:7207819 original size:14 final size:14
Alignment explanation
Indices: 7207800--7207834 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
7207790 TGACATTTTT
*
7207800 TTCTAATGATACTA
1 TTCTAACGATACTA
*
7207814 TTCTAACGATATTA
1 TTCTAACGATACTA
7207828 TTCTAAC
1 TTCTAAC
7207835 ATGTAATTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (14 bp):
TTCTAACGATACTA
Found at i:7209035 original size:14 final size:14
Alignment explanation
Indices: 7209012--7209046 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
7209002 AAAACTTGGA
*
7209012 ATAAACTTTGTAAT
1 ATAAATTTTGTAAT
7209026 ATAAATTTTGTAAT
1 ATAAATTTTGTAAT
7209040 ATAAATT
1 ATAAATT
7209047 AAATTCATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.46
Consensus pattern (14 bp):
ATAAATTTTGTAAT
Found at i:7209080 original size:62 final size:62
Alignment explanation
Indices: 7208989--7209156 Score: 309
Period size: 62 Copynumber: 2.7 Consensus size: 62
7208979 GCAACATACA
* *
7208989 ACATTACAACATTAAAACTTGGAATAAACTTTGTAATATAAATTTTGTAATATAAATTAAAT
1 ACATTACAACATTAAAACTTGGAACAAACTTTGTAATATAAATTTTATAATATAAATTAAAT
*
7209051 TCATTACAACATTAAAACTTGGAACAAACTTTGTAATATAAATTTTATAATATAAATTAAAT
1 ACATTACAACATTAAAACTTGGAACAAACTTTGTAATATAAATTTTATAATATAAATTAAAT
7209113 ACATTACAACATTAAAACTTGGAACAAACTTTGTAATATAAATT
1 ACATTACAACATTAAAACTTGGAACAAACTTTGTAATATAAATT
7209157 AGGTACATTG
Statistics
Matches: 102, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 102 1.00
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.36
Consensus pattern (62 bp):
ACATTACAACATTAAAACTTGGAACAAACTTTGTAATATAAATTTTATAATATAAATTAAAT
Found at i:7215126 original size:3 final size:3
Alignment explanation
Indices: 7215120--7215156 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
7215110 TATAAACACA
7215120 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
7215157 GTATAAACTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7217016 original size:22 final size:21
Alignment explanation
Indices: 7216994--7217038 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
7216984 TTTTAATTAA
*
7216994 TAATTTTT-TTTCAAT-TTTT
1 TAATTTTTAATTCAATATTTT
7217013 TAATTTTTAATTCAATATTTT
1 TAATTTTTAATTCAATATTTT
7217034 TAATT
1 TAATT
7217039 AAAAACTCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 8 0.35
20 6 0.26
21 9 0.39
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (21 bp):
TAATTTTTAATTCAATATTTT
Found at i:7217323 original size:26 final size:26
Alignment explanation
Indices: 7217275--7217325 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
7217265 ATATAATTAT
7217275 TATTTTTATATGTAAAATATTTCAAA
1 TATTTTTATATGTAAAATATTTCAAA
7217301 TATTTTTATATGTAAAATATTTCAA
1 TATTTTTATATGTAAAATATTTCAA
7217326 TTAATTATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (26 bp):
TATTTTTATATGTAAAATATTTCAAA
Found at i:7218090 original size:24 final size:24
Alignment explanation
Indices: 7218040--7218091 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7218030 AAATTTTGGT
*
7218040 AAATAAAAAATTTAGTGAACATTA
1 AAATAAAAAATTTAGTGAACATCA
**
7218064 AAATAAAAAATTTAGTGAGTATCA
1 AAATAAAAAATTTAGTGAACATCA
7218088 AAAT
1 AAAT
7218092 CAAATATATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.58, C:0.04, G:0.10, T:0.29
Consensus pattern (24 bp):
AAATAAAAAATTTAGTGAACATCA
Found at i:7227488 original size:23 final size:21
Alignment explanation
Indices: 7227458--7227504 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
7227448 TCATCCGTCT
7227458 AAAAATTATAAAAAATGAAACAG
1 AAAAATTA-AAAAAATGAAA-AG
* *
7227481 AAAAATTAAATAAATGTAAAG
1 AAAAATTAAAAAAATGAAAAG
7227502 AAA
1 AAA
7227505 TCGAAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 5 0.23
22 9 0.41
23 8 0.36
ACGTcount: A:0.70, C:0.02, G:0.09, T:0.19
Consensus pattern (21 bp):
AAAAATTAAAAAAATGAAAAG
Found at i:7231887 original size:37 final size:37
Alignment explanation
Indices: 7231818--7231908 Score: 112
Period size: 37 Copynumber: 2.5 Consensus size: 37
7231808 ACACAAGTAG
7231818 TCCAACCAA-AACACGCCAAACACTCATAAGAGCTAA
1 TCCAACCAATAACACGCCAAACACTCATAAGAGCTAA
* * ** *
7231854 TCCAACCAATAACACTCCAAGCGGTCATGAGAGCTAA
1 TCCAACCAATAACACGCCAAACACTCATAAGAGCTAA
* *
7231891 TCCAACTAATAATACGCC
1 TCCAACCAATAACACGCC
7231909 TCGACACTAA
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
36 9 0.20
37 37 0.80
ACGTcount: A:0.42, C:0.32, G:0.11, T:0.15
Consensus pattern (37 bp):
TCCAACCAATAACACGCCAAACACTCATAAGAGCTAA
Found at i:7239600 original size:3 final size:3
Alignment explanation
Indices: 7239592--7239618 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
7239582 AGATTTAATA
7239592 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
7239619 AAGGTTAGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:7240683 original size:4 final size:4
Alignment explanation
Indices: 7240674--7240700 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
7240664 TGTTGTTATT
7240674 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
7240701 CGATTTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:7248395 original size:15 final size:15
Alignment explanation
Indices: 7248355--7248396 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
7248345 TAAAGTGGTG
*
7248355 ATTGAAATATTT-TA
1 ATTGAAATATTTCAA
*
7248369 ATT-AATTATTTCAA
1 ATTGAAATATTTCAA
7248383 ATTGAAATATTTCA
1 ATTGAAATATTTCA
7248397 CTTATAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
13 7 0.30
14 7 0.30
15 9 0.39
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.48
Consensus pattern (15 bp):
ATTGAAATATTTCAA
Found at i:7253707 original size:24 final size:24
Alignment explanation
Indices: 7253671--7253730 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
7253661 ATTACCATTG
*
7253671 TTTTTACTATTACTCA-TATTATTA
1 TTTTTATTATTACT-ATTATTATTA
*
7253695 TTTTTATTCTTACTATTATTATTA
1 TTTTTATTATTACTATTATTATTA
*
7253719 TTATTATTATTA
1 TTTTTATTATTA
7253731 TTATCATCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
23 1 0.03
24 30 0.97
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.63
Consensus pattern (24 bp):
TTTTTATTATTACTATTATTATTA
Found at i:7253754 original size:3 final size:3
Alignment explanation
Indices: 7253687--7253734 Score: 69
Period size: 3 Copynumber: 16.0 Consensus size: 3
7253677 CTATTACTCA
* * *
7253687 TAT TAT TAT TTT TAT TCT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7253735 CATCATCATC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:7253954 original size:12 final size:13
Alignment explanation
Indices: 7253937--7253965 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7253927 GTTTTAATAT
7253937 TATTTG-TTTGTA
1 TATTTGTTTTGTA
7253949 TATTTGTTTTGTA
1 TATTTGTTTTGTA
7253962 TATT
1 TATT
7253966 ATGGATTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.17, C:0.00, G:0.14, T:0.69
Consensus pattern (13 bp):
TATTTGTTTTGTA
Found at i:7257915 original size:26 final size:26
Alignment explanation
Indices: 7257877--7257958 Score: 92
Period size: 26 Copynumber: 3.2 Consensus size: 26
7257867 GTTAACACTT
* *
7257877 TGAAATGGCTATACGAAATGATTATA
1 TGAAATGGTTATACGAAATGGTTATA
* *
7257903 TGAATTGGTTATACGAAATGGTTATG
1 TGAAATGGTTATACGAAATGGTTATA
* * * *
7257929 TGAAATGATTAAAAGAATTGGTTATA
1 TGAAATGGTTATACGAAATGGTTATA
7257955 TGAA
1 TGAA
7257959 TAAGTTATAC
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.40, C:0.04, G:0.22, T:0.34
Consensus pattern (26 bp):
TGAAATGGTTATACGAAATGGTTATA
Found at i:7257933 original size:13 final size:13
Alignment explanation
Indices: 7257877--7257958 Score: 74
Period size: 13 Copynumber: 6.3 Consensus size: 13
7257867 GTTAACACTT
*
7257877 TGAAATGGCTATA
1 TGAAATGGTTATA
* *
7257890 CGAAATGATTATA
1 TGAAATGGTTATA
*
7257903 TGAATTGGTTATA
1 TGAAATGGTTATA
* *
7257916 CGAAATGGTTATG
1 TGAAATGGTTATA
* *
7257929 TGAAATGATTAAA
1 TGAAATGGTTATA
* *
7257942 AGAATTGGTTATA
1 TGAAATGGTTATA
7257955 TGAA
1 TGAA
7257959 TAAGTTATAC
Statistics
Matches: 51, Mismatches: 18, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
13 51 1.00
ACGTcount: A:0.40, C:0.04, G:0.22, T:0.34
Consensus pattern (13 bp):
TGAAATGGTTATA
Found at i:7258013 original size:27 final size:25
Alignment explanation
Indices: 7257983--7258039 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 25
7257973 ACAAATAAAC
*
7257983 GAAATACCTATATGAAGCGGTTATAT
1 GAAATAACTATATGAAG-GGTTATAT
* *
7258009 AGAAATAATTATATGAAGTGTTATAT
1 -GAAATAACTATATGAAGGGTTATAT
7258035 GAAAT
1 GAAAT
7258040 GTTTATATGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 5 0.19
26 7 0.26
27 15 0.56
ACGTcount: A:0.44, C:0.05, G:0.18, T:0.33
Consensus pattern (25 bp):
GAAATAACTATATGAAGGGTTATAT
Found at i:7258045 original size:25 final size:27
Alignment explanation
Indices: 7257991--7258048 Score: 75
Period size: 25 Copynumber: 2.2 Consensus size: 27
7257981 ACGAAATACC
7257991 TATATGAAGCGGTTATATAGAAATAAT
1 TATATGAAGCGGTTATATAGAAATAAT
* **
7258018 TATATGAAG-TGTTATAT-GAAATGTT
1 TATATGAAGCGGTTATATAGAAATAAT
7258043 TATATG
1 TATATG
7258049 GATAGATATG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 12 0.43
26 7 0.25
27 9 0.32
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.40
Consensus pattern (27 bp):
TATATGAAGCGGTTATATAGAAATAAT
Found at i:7261068 original size:13 final size:13
Alignment explanation
Indices: 7261052--7261107 Score: 85
Period size: 13 Copynumber: 4.3 Consensus size: 13
7261042 GAAGTGCTTG
7261052 AGAAGTACTTTTC
1 AGAAGTACTTTTC
7261065 AGAAGTACTTTTC
1 AGAAGTACTTTTC
* *
7261078 AGAAGTGCTTTTG
1 AGAAGTACTTTTC
*
7261091 AGAAGTACTTTTG
1 AGAAGTACTTTTC
7261104 AGAA
1 AGAA
7261108 ATTTGAGTGT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 40 1.00
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36
Consensus pattern (13 bp):
AGAAGTACTTTTC
Found at i:7261102 original size:39 final size:37
Alignment explanation
Indices: 7261035--7261107 Score: 110
Period size: 39 Copynumber: 1.9 Consensus size: 37
7261025 TTCTTCATTG
*
7261035 CTTTTGAGAAGTGCTTGAGAAGTACTTTTCAGAAGTA
1 CTTTTCAGAAGTGCTTGAGAAGTACTTTTCAGAAGTA
*
7261072 CTTTTCAGAAGTGCTTTTGAGAAGTACTTTTGAGAA
1 CTTTTCAGAAGTGC--TTGAGAAGTACTTTTCAGAA
7261108 ATTTGAGTGT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
37 13 0.41
39 19 0.59
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (37 bp):
CTTTTCAGAAGTGCTTGAGAAGTACTTTTCAGAAGTA
Found at i:7261711 original size:22 final size:21
Alignment explanation
Indices: 7261686--7261729 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 21
7261676 AAGCATATGA
*
7261686 AAATGATTTGGTTATATTCAAT
1 AAATGATTTGGTTA-ATACAAT
7261708 AAATGATTTGGTTAATACAAT
1 AAATGATTTGGTTAATACAAT
7261729 A
1 A
7261730 CTTATATTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.41, C:0.05, G:0.14, T:0.41
Consensus pattern (21 bp):
AAATGATTTGGTTAATACAAT
Found at i:7261738 original size:22 final size:22
Alignment explanation
Indices: 7261713--7261783 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
7261703 TCAATAAATG
7261713 ATTTGGTTAATACAATACTTAT
1 ATTTGGTTAATACAATACTTAT
* * **
7261735 ATTT-GATAA-GCATATGA-AAAT
1 ATTTGGTTAATACA-AT-ACTTAT
7261756 GATTTGGTTAATACAATACTTAT
1 -ATTTGGTTAATACAATACTTAT
7261779 ATTTG
1 ATTTG
7261784 ATAAGCATAT
Statistics
Matches: 35, Mismatches: 8, Indels: 12
0.64 0.15 0.22
Matches are distributed among these distances:
20 2 0.06
21 8 0.23
22 15 0.43
23 8 0.23
24 2 0.06
ACGTcount: A:0.38, C:0.07, G:0.13, T:0.42
Consensus pattern (22 bp):
ATTTGGTTAATACAATACTTAT
Found at i:7261756 original size:44 final size:44
Alignment explanation
Indices: 7261708--7261801 Score: 188
Period size: 44 Copynumber: 2.1 Consensus size: 44
7261698 TATATTCAAT
7261708 AAATGATTTGGTTAATACAATACTTATATTTGATAAGCATATGA
1 AAATGATTTGGTTAATACAATACTTATATTTGATAAGCATATGA
7261752 AAATGATTTGGTTAATACAATACTTATATTTGATAAGCATATGA
1 AAATGATTTGGTTAATACAATACTTATATTTGATAAGCATATGA
7261796 AAATGA
1 AAATGA
7261802 AAGTCGAGAC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 50 1.00
ACGTcount: A:0.43, C:0.06, G:0.14, T:0.37
Consensus pattern (44 bp):
AAATGATTTGGTTAATACAATACTTATATTTGATAAGCATATGA
Found at i:7270077 original size:21 final size:22
Alignment explanation
Indices: 7270053--7270101 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 22
7270043 GCCTAAATGG
*
7270053 CCAGCCAGTGTGGC-CA-ATAGT
1 CCAGCC-GTGTGCCTCACATAGT
7270074 CCAGACCGTGTGCCTCACATAGT
1 CCAG-CCGTGTGCCTCACATAGT
7270097 CCAGC
1 CCAGC
7270102 ACATGGCCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
21 10 0.42
22 5 0.21
23 9 0.38
ACGTcount: A:0.22, C:0.35, G:0.24, T:0.18
Consensus pattern (22 bp):
CCAGCCGTGTGCCTCACATAGT
Found at i:7276693 original size:24 final size:25
Alignment explanation
Indices: 7276640--7276690 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
7276630 GCAAAGCACA
*
7276640 AACTAGTGTTTTATGTTTAAAACTT
1 AACTAGTGTTTAATGTTTAAAACTT
7276665 AACTAGTGTTTAATGTTTAAAACTT
1 AACTAGTGTTTAATGTTTAAAACTT
7276690 A
1 A
7276691 CTACGTATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.35, C:0.08, G:0.12, T:0.45
Consensus pattern (25 bp):
AACTAGTGTTTAATGTTTAAAACTT
Found at i:7276701 original size:24 final size:25
Alignment explanation
Indices: 7276640--7276709 Score: 81
Period size: 25 Copynumber: 2.8 Consensus size: 25
7276630 GCAAAGCACA
* *
7276640 AACTAGTGTTTTATGTTTAAAACTT
1 AACTAGTGATTAATGTTTAAAACTT
*
7276665 AACTAGTGTTTAATGTTTAAAACTT
1 AACTAGTGATTAATGTTTAAAACTT
*
7276690 -ACTACGT-ATTAAAGTTTAAA
1 AACTA-GTGATTAATGTTTAAA
7276710 CCAAAGATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
24 15 0.37
25 26 0.63
ACGTcount: A:0.37, C:0.09, G:0.11, T:0.43
Consensus pattern (25 bp):
AACTAGTGATTAATGTTTAAAACTT
Found at i:7277348 original size:37 final size:38
Alignment explanation
Indices: 7277261--7277350 Score: 119
Period size: 37 Copynumber: 2.4 Consensus size: 38
7277251 ACCACTCCGA
* * * *
7277261 CCACCCTACACACCACATATGGGCTATAGTATGCCCAT
1 CCACCCTACACACCACATATGGACCATAATAGGCCCAT
* *
7277299 CCACCTTGCACACCACATA-GGACCATAATAGGCCCAT
1 CCACCCTACACACCACATATGGACCATAATAGGCCCAT
7277336 CCACCCTACACACCA
1 CCACCCTACACACCA
7277351 AAATTGTGGA
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
37 27 0.61
38 17 0.39
ACGTcount: A:0.31, C:0.41, G:0.11, T:0.17
Consensus pattern (38 bp):
CCACCCTACACACCACATATGGACCATAATAGGCCCAT
Found at i:7281917 original size:24 final size:24
Alignment explanation
Indices: 7281890--7281937 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
7281880 ATTGAAATGG
7281890 ATTG-ATTTAGTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
7281914 ATTGAATTTATATTGATTGAATTT
1 ATTGAATTTATATTGATTGAATTT
7281938 GTATATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 3 0.14
24 14 0.64
25 5 0.23
ACGTcount: A:0.31, C:0.00, G:0.17, T:0.52
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:7288897 original size:25 final size:23
Alignment explanation
Indices: 7288843--7288907 Score: 78
Period size: 24 Copynumber: 2.8 Consensus size: 23
7288833 AAACAACCAT
*
7288843 AAAAATAAAAAAATAT-AGTTCA
1 AAAAATAAAAAAAAATAAGTTCA
* *
7288865 AAATATAAAAACAAAATAAGTTTA
1 AAAAATAAAAA-AAAATAAGTTCA
7288889 AGAAAATAAAAAAAAATAA
1 A-AAAATAAAAAAAAATAA
7288908 AAATAAAAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
22 10 0.28
23 4 0.11
24 13 0.36
25 9 0.25
ACGTcount: A:0.72, C:0.03, G:0.05, T:0.20
Consensus pattern (23 bp):
AAAAATAAAAAAAAATAAGTTCA
Found at i:7288900 original size:6 final size:6
Alignment explanation
Indices: 7288891--7288939 Score: 75
Period size: 6 Copynumber: 8.5 Consensus size: 6
7288881 TAAGTTTAAG
*
7288891 AAAAT- AAAA-A AAAATA AAAATA AAAATA AAAATA AAAATA AAAACA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
7288937 AAA
1 AAA
7288940 TAGACTCAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
5 8 0.20
6 33 0.80
ACGTcount: A:0.86, C:0.02, G:0.00, T:0.12
Consensus pattern (6 bp):
AAAATA
Found at i:7290728 original size:35 final size:36
Alignment explanation
Indices: 7290682--7290760 Score: 99
Period size: 35 Copynumber: 2.2 Consensus size: 36
7290672 AAGGACAAAT
*
7290682 GTTAAATTGAG-TTTAATGACTCATTTAATTCA-GAC
1 GTTAATTTGAGTTTTAATGACTC-TTTAATTCACGAC
*
7290717 GTTAATTTGAGTTTTTAATGGCTCTTTAATTCACGGAC
1 GTTAATTTGAG-TTTTAATGACTCTTTAATTCAC-GAC
7290755 GTTAAT
1 GTTAAT
7290761 GGCTCCAGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
35 10 0.26
36 9 0.24
37 10 0.26
38 9 0.24
ACGTcount: A:0.29, C:0.11, G:0.16, T:0.43
Consensus pattern (36 bp):
GTTAATTTGAGTTTTAATGACTCTTTAATTCACGAC
Found at i:7291745 original size:31 final size:32
Alignment explanation
Indices: 7291695--7291764 Score: 79
Period size: 31 Copynumber: 2.2 Consensus size: 32
7291685 TTGATATAAT
* * * *
7291695 TATACACTTGAAATTTTAATTGTGGTTTAA-A
1 TATATACTTAAAACTTTAATTGTGATTTAACA
*
7291726 TATATACTTAAAACTTTAATTTTGATTTAATCA
1 TATATACTTAAAACTTTAATTGTGATTTAA-CA
7291759 TATATA
1 TATATA
7291765 TTTACAAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
31 25 0.78
33 7 0.22
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.47
Consensus pattern (32 bp):
TATATACTTAAAACTTTAATTGTGATTTAACA
Found at i:7291762 original size:33 final size:31
Alignment explanation
Indices: 7291686--7291764 Score: 77
Period size: 31 Copynumber: 2.5 Consensus size: 31
7291676 TTTATTAAAT
* * * * *
7291686 TGATATAATTATACACTTGAAATTTTAATTG
1 TGATTTAAATATATACTTAAAACTTTAATTG
* *
7291717 TGGTTTAAATATATACTTAAAACTTTAATTT
1 TGATTTAAATATATACTTAAAACTTTAATTG
7291748 TGATTTAATCATATATA
1 TGATTTAA--ATATATA
7291765 TTTACAAAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
31 31 0.82
33 7 0.18
ACGTcount: A:0.39, C:0.06, G:0.08, T:0.47
Consensus pattern (31 bp):
TGATTTAAATATATACTTAAAACTTTAATTG
Found at i:7291921 original size:29 final size:31
Alignment explanation
Indices: 7291875--7291938 Score: 80
Period size: 30 Copynumber: 2.1 Consensus size: 31
7291865 GTAAATAATT
7291875 TATAAGAATTAAATC-AAATCAAAATTTCATG
1 TATAAGAATTAAATCAAAATCAAAATTT-ATG
* *
7291906 TATAA-AATTACA-CAAAATCAAAGTTTATG
1 TATAAGAATTAAATCAAAATCAAAATTTATG
7291935 TATA
1 TATA
7291939 CACTTGCACA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 8 0.27
30 17 0.57
31 5 0.17
ACGTcount: A:0.52, C:0.09, G:0.06, T:0.33
Consensus pattern (31 bp):
TATAAGAATTAAATCAAAATCAAAATTTATG
Found at i:7297414 original size:5 final size:5
Alignment explanation
Indices: 7297399--7297449 Score: 93
Period size: 5 Copynumber: 10.0 Consensus size: 5
7297389 AATTTAAAAT
7297399 TATACA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATA-A TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
7297450 ATTGTGATCT
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 41 0.91
6 4 0.09
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (5 bp):
TATAA
Found at i:7298920 original size:37 final size:37
Alignment explanation
Indices: 7298879--7298992 Score: 92
Period size: 37 Copynumber: 3.1 Consensus size: 37
7298869 TAGTTGAGTT
7298879 GATTTATTTGATGTGGAATAAAATTAGGTTGTCGCGA
1 GATTTATTTGATGTGGAATAAAATTAGGTTGTCGCGA
* * * ** * * **
7298916 GATTTCTATGACTTTATAA-ATAATTTA-GTTG-AG-TT
1 GATTTATTTGA-TGTGGAATA-AAATTAGGTTGTCGCGA
*
7298951 GATTTATTTGATGTGGAATAAAATTAGGTGGTCGCGA
1 GATTTATTTGATGTGGAATAAAATTAGGTTGTCGCGA
7298988 GATTT
1 GATTT
7298993 GTTCGACTAG
Statistics
Matches: 52, Mismatches: 19, Indels: 12
0.63 0.23 0.14
Matches are distributed among these distances:
34 9 0.17
35 13 0.25
36 2 0.04
37 19 0.37
38 9 0.17
ACGTcount: A:0.30, C:0.05, G:0.24, T:0.41
Consensus pattern (37 bp):
GATTTATTTGATGTGGAATAAAATTAGGTTGTCGCGA
Found at i:7298964 original size:72 final size:72
Alignment explanation
Indices: 7298847--7298992 Score: 274
Period size: 72 Copynumber: 2.0 Consensus size: 72
7298837 CAAAAAAAAA
*
7298847 TTCTATGACTTTAGAAATAATTTAGTTGAGTTGATTTATTTGATGTGGAATAAAATTAGGTTGTC
1 TTCTATGACTTTAGAAATAATTTAGTTGAGTTGATTTATTTGATGTGGAATAAAATTAGGTGGTC
7298912 GCGAGAT
66 GCGAGAT
*
7298919 TTCTATGACTTTATAAATAATTTAGTTGAGTTGATTTATTTGATGTGGAATAAAATTAGGTGGTC
1 TTCTATGACTTTAGAAATAATTTAGTTGAGTTGATTTATTTGATGTGGAATAAAATTAGGTGGTC
7298984 GCGAGAT
66 GCGAGAT
7298991 TT
1 TT
7298993 GTTCGACTAG
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 72 1.00
ACGTcount: A:0.30, C:0.05, G:0.22, T:0.42
Consensus pattern (72 bp):
TTCTATGACTTTAGAAATAATTTAGTTGAGTTGATTTATTTGATGTGGAATAAAATTAGGTGGTC
GCGAGAT
Found at i:7302021 original size:27 final size:27
Alignment explanation
Indices: 7301983--7302040 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
7301973 TTTGGCTAAA
7301983 CATCCCTGGACTCAGAAAGAAATGACC
1 CATCCCTGGACTCAGAAAGAAATGACC
7302010 CATCCCTGGACTCAGAAAGAAATGACC
1 CATCCCTGGACTCAGAAAGAAATGACC
7302037 CATC
1 CATC
7302041 TTTACGATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.36, C:0.31, G:0.17, T:0.16
Consensus pattern (27 bp):
CATCCCTGGACTCAGAAAGAAATGACC
Found at i:7312328 original size:16 final size:15
Alignment explanation
Indices: 7312303--7312340 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
7312293 AAAGAAAAAC
*
7312303 AATATGTAAATGATAT
1 AATATATAAATGAT-T
7312319 AATATATAAATGATT
1 AATATATAAATGATT
7312334 AA-ATATA
1 AATATATA
7312341 CAAATAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 5 0.24
15 3 0.14
16 13 0.62
ACGTcount: A:0.55, C:0.00, G:0.08, T:0.37
Consensus pattern (15 bp):
AATATATAAATGATT
Found at i:7315819 original size:20 final size:20
Alignment explanation
Indices: 7315794--7315832 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7315784 CGTAAAATAA
*
7315794 TTTCTGAAAAATGTTTTACT
1 TTTCTGAAAAATGATTTACT
*
7315814 TTTCTGTAAAATGATTTAC
1 TTTCTGAAAAATGATTTAC
7315833 CGGAAATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.49
Consensus pattern (20 bp):
TTTCTGAAAAATGATTTACT
Found at i:7317361 original size:21 final size:21
Alignment explanation
Indices: 7317336--7317378 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
7317326 TATAAACAAA
* *
7317336 AAATGCTCGTAGCAGCAACAC
1 AAATGCTCGTAACAACAACAC
7317357 AAATGCTCGTAACAACAACAC
1 AAATGCTCGTAACAACAACAC
7317378 A
1 A
7317379 TAACAATCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.14, T:0.14
Consensus pattern (21 bp):
AAATGCTCGTAACAACAACAC
Found at i:7318006 original size:162 final size:170
Alignment explanation
Indices: 7317605--7318011 Score: 397
Period size: 162 Copynumber: 2.4 Consensus size: 170
7317595 ATTCGGTTCA
* * * * * * * *
7317605 AATAAAGCATCAAAATAATCATTACAACCATAGAACCCAACTTCAAAACTAAATAAAAATCTGAA
1 AATAAAGCATCATAATAATCATTACATCCTTAAAACCCAACTTCCAAATTTAGTAAAAATCTGAA
* * *
7317670 CTTTAAGGACTATCTATATTTCCTATATTTTCCCATCCATTTTTTAACCCAAATTTCTCATTTTC
66 CTGTAAAGACTA--TATATTTCCTATATTTTCCCATCCATTTTCTAACCCAAATTTCTCATTTTC
**
7317735 CATTCCTTTCTCAGAGACCAAACAAACTTTCCTTTTCATTTAGTTC
129 CATTCCTTTCTCAGAGACCAAACAAACGGTCC---TCATTTA-TTC
* * * * * * ** *
7317781 AGATAAAGCATAATAATAAATCCTTATATACTTATAACCCAACTTTCGTATGTAGTAAAAATCTG
1 A-ATAAAGCATCATAAT-AATCATTACATCCTTAAAACCCAACTTCCAAATTTAGTAAAAATCTG
* *
7317846 AACTGTAAAGACTA-A-A-TTCACTGTATTTTCCCATCCATTTTCTAA-CCAAACTTT-TCCTTT
64 AACTGTAAAGACTATATATTTC-CTATATTTTCCCATCCATTTTCTAACCCAAA-TTTCT-CATT
7317906 TTCCA-TCCTTTCTCAGAGACCAAAC-AA-GGTCC-CA-TT-TTC
126 TTCCATTCCTTTCTCAGAGACCAAACAAACGGTCCTCATTTATTC
*
7317945 -ATTAAGCATCATAATACATCATTACATCCTTAAAACCCAACTTCCAAATTTAGTAAAAATCTGA
1 AATAAAGCATCATAATA-ATCATTACATCCTTAAAACCCAACTTCCAAATTTAGTAAAAATCTGA
7318009 ACT
65 ACT
7318012 TTAAGATCAC
Statistics
Matches: 192, Mismatches: 33, Indels: 26
0.76 0.13 0.10
Matches are distributed among these distances:
161 1 0.01
162 55 0.29
164 3 0.02
166 2 0.01
167 2 0.01
171 3 0.02
172 2 0.01
173 29 0.15
174 35 0.18
175 1 0.01
176 1 0.01
177 13 0.07
178 45 0.23
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.34
Consensus pattern (170 bp):
AATAAAGCATCATAATAATCATTACATCCTTAAAACCCAACTTCCAAATTTAGTAAAAATCTGAA
CTGTAAAGACTATATATTTCCTATATTTTCCCATCCATTTTCTAACCCAAATTTCTCATTTTCCA
TTCCTTTCTCAGAGACCAAACAAACGGTCCTCATTTATTC
Found at i:7319821 original size:13 final size:13
Alignment explanation
Indices: 7319786--7319818 Score: 50
Period size: 12 Copynumber: 2.5 Consensus size: 13
7319776 TAATTGAAAT
7319786 AATAGTTTAATTTG
1 AATA-TTTAATTTG
7319800 AATATTTAA-TTG
1 AATATTTAATTTG
7319812 AATATTT
1 AATATTT
7319819 TAAATTTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 10 0.53
13 5 0.26
14 4 0.21
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (13 bp):
AATATTTAATTTG
Found at i:7323345 original size:33 final size:33
Alignment explanation
Indices: 7323303--7323453 Score: 134
Period size: 33 Copynumber: 4.7 Consensus size: 33
7323293 ACTCTAGCTA
*
7323303 TGTTTACTGTCCCAATGA-ACTATCTCTTTTCTG
1 TGTTTACTGTCCCAATCAGACTATCTCTTTT-TG
* *
7323336 TGTTTACTGTCTC-ATCAGACAATCTCTTTTT-
1 TGTTTACTGTCCCAATCAGACTATCTCTTTTTG
* * *
7323367 TGTTTACTGTTCCACT-GGACTATCTCTGTTTTG
1 TGTTTACTGTCCCAATCAGACTATCTCT-TTTTG
* * * * *
7323400 TGTTTACTATCCCAA-CAGACTATTTATGTTCTA
1 TGTTTACTGTCCCAATCAGACTATCTCT-TTTTG
7323433 TGTTTACTGTCCCAAT-AGACT
1 TGTTTACTGTCCCAATCAGACT
7323454 GTCATTGTGG
Statistics
Matches: 95, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
31 20 0.21
32 9 0.09
33 66 0.69
ACGTcount: A:0.20, C:0.23, G:0.13, T:0.45
Consensus pattern (33 bp):
TGTTTACTGTCCCAATCAGACTATCTCTTTTTG
Found at i:7323712 original size:51 final size:51
Alignment explanation
Indices: 7323657--7323763 Score: 162
Period size: 51 Copynumber: 2.1 Consensus size: 51
7323647 TCCTTGGTTG
* *
7323657 TACGCTACATAA-TCTATACTAAACTGCCAAAGCGTCTTTTATCTATAGTCT
1 TACGCTACATAATTC-ATACTAAACTGCCAAAGCATCTTTCATCTATAGTCT
* *
7323708 TACGCTACATACTTCATACTAGACTGCCAAAGCATCTTTCATCTATAGTCT
1 TACGCTACATAATTCATACTAAACTGCCAAAGCATCTTTCATCTATAGTCT
7323759 TACGC
1 TACGC
7323764 CATATATCGT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
51 49 0.96
52 2 0.04
ACGTcount: A:0.30, C:0.26, G:0.10, T:0.34
Consensus pattern (51 bp):
TACGCTACATAATTCATACTAAACTGCCAAAGCATCTTTCATCTATAGTCT
Found at i:7330640 original size:27 final size:27
Alignment explanation
Indices: 7330575--7330640 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
7330565 TATAGCATGT
*
7330575 TTATTT-TTA-TTTTAAAAATAGGAAT
1 TTATTTATTATTTTTAAAAATAGGAAA
* *
7330600 TTTTTGTATT-TTTTTAAACATAGGAAA
1 TTATT-TATTATTTTTAAAAATAGGAAA
7330627 TTATTTATTATTTT
1 TTATTTATTATTTT
7330641 ATTAGTAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
25 4 0.12
26 5 0.15
27 24 0.73
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.58
Consensus pattern (27 bp):
TTATTTATTATTTTTAAAAATAGGAAA
Found at i:7334799 original size:117 final size:117
Alignment explanation
Indices: 7334671--7335168 Score: 935
Period size: 117 Copynumber: 4.3 Consensus size: 117
7334661 AAGTAGATTA
7334671 TAAATTATATTTAATAATAATTA-TTTAAATTATATTTTAGTATTATATATTATGATTTTATTAG
1 TAAATTATATTTAATAATAATTATTTTAAATTATATTTTAGTATTATATATTATGATTTTATTAG
7334735 TAAATTCATATAAGAATATTTATTAACAATTTTATTAAATTATATATTATTAT
66 TAAATTCATATAAGAATATTTATTAACAATTTTATTAAATTATATATT-TTAT
*
7334788 TAAATTATATTTAATAATAATTATTTTAAATTATGTTTTAGTATTATATATTATGATTTTATTAG
1 TAAATTATATTTAATAATAATTATTTTAAATTATATTTTAGTATTATATATTATGATTTTATTAG
7334853 TAAATTCATATAAGAATATTTATTAACAATTTTATTAAATTATATATTTTAT
66 TAAATTCATATAAGAATATTTATTAACAATTTTATTAAATTATATATTTTAT
7334905 TAAATTATATTTAATAATAATTATTTTAAATTATATTTTAGTATTATATATTATGATTTTATTAG
1 TAAATTATATTTAATAATAATTATTTTAAATTATATTTTAGTATTATATATTATGATTTTATTAG
*
7334970 TAAATTCATATAAGAATATTTATTTACAATTTTATTAAATTATATATTTTAT
66 TAAATTCATATAAGAATATTTATTAACAATTTTATTAAATTATATATTTTAT
7335022 TAAATTATATTTAATAATAATTATTTTAAATTATATTTTAGTATTATATATTATGATTTTATTAG
1 TAAATTATATTTAATAATAATTATTTTAAATTATATTTTAGTATTATATATTATGATTTTATTAG
7335087 TAAATTCATATAAGAATATTTATTAACAATTTTATTAAATTATATATTTTAT
66 TAAATTCATATAAGAATATTTATTAACAATTTTATTAAATTATATATTTTAT
* * *
7335139 TAAATTATATTTTATAACAATTATGTTAAA
1 TAAATTATATTTAATAATAATTATTTTAAA
7335169 ATATGATTAC
Statistics
Matches: 373, Mismatches: 7, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
117 285 0.76
118 88 0.24
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.53
Consensus pattern (117 bp):
TAAATTATATTTAATAATAATTATTTTAAATTATATTTTAGTATTATATATTATGATTTTATTAG
TAAATTCATATAAGAATATTTATTAACAATTTTATTAAATTATATATTTTAT
Found at i:7334833 original size:44 final size:44
Alignment explanation
Indices: 7334750--7334833 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
7334740 TCATATAAGA
* *
7334750 ATATTTATTAACAATTTTATTAAATTATATATTATTATTAAATT
1 ATATTTAATAACAATTTTATTAAATTATATATTAGTATTAAATT
* * *
7334794 ATATTTAATAATAATTATT-TTAAATTATGTTTTAGTATTA
1 ATATTTAATAACAATT-TTATTAAATTATATATTAGTATTA
7334834 TATATTATGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 32 0.94
45 2 0.06
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.55
Consensus pattern (44 bp):
ATATTTAATAACAATTTTATTAAATTATATATTAGTATTAAATT
Found at i:7334901 original size:17 final size:17
Alignment explanation
Indices: 7334881--7335031 Score: 70
Period size: 17 Copynumber: 9.0 Consensus size: 17
7334871 TTTATTAACA
7334881 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
7334898 ATTTTATTAAA-T-TAT
1 ATTTTATTAAATTATAT
*
7334913 A-TTTAAT-AA-TA-AT
1 ATTTTATTAAATTATAT
*
7334926 -TATT-TTAAATTATAT
1 ATTTTATTAAATTATAT
7334941 -TTTAGTATTATATATTATGAT
1 ATTT--TATTA-A-ATTAT-AT
* *
7334962 TTTATTAGTAAATTCATAT
1 ATT-TTATTAAATT-ATAT
*** * * *
7334981 AAGAATATTTATTTACA-
1 -ATTTTATTAAATTATAT
7334998 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
7335015 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
7335032 TTAATAATAA
Statistics
Matches: 99, Mismatches: 19, Indels: 32
0.66 0.13 0.21
Matches are distributed among these distances:
12 1 0.01
13 9 0.09
14 7 0.07
15 8 0.08
16 11 0.11
17 29 0.29
18 5 0.05
19 12 0.12
20 8 0.08
21 6 0.06
22 2 0.02
23 1 0.01
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Done.