Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 27 of 221
Found at i:7617364 original size:23 final size:23
Alignment explanation
Indices: 7617329--7617383 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 23
7617319 ATGTGTTAAA
7617329 AAAATAAATAAATATAATAA-ATA-
1 AAAA-AAATAAATA-AATAATATAG
7617352 AATAAAAATAAATAAATAATATAG
1 AA-AAAAATAAATAAATAATATAG
7617376 AAAAAAAT
1 AAAAAAAT
7617384 TGAAATCGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
22 5 0.17
23 20 0.69
24 4 0.14
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.24
Consensus pattern (23 bp):
AAAAAAATAAATAAATAATATAG
Found at i:7618288 original size:58 final size:58
Alignment explanation
Indices: 7618222--7618337 Score: 214
Period size: 58 Copynumber: 2.0 Consensus size: 58
7618212 CAATAAATGA
*
7618222 AAGTTATCAAGAAGGAGAAGTCAATATATAAGATATTATTTTGTTACTCCATGTTATG
1 AAGTTATCAAGAAGGAAAAGTCAATATATAAGATATTATTTTGTTACTCCATGTTATG
*
7618280 AAGTTATCAAGAAGGAAAAGTCAATATATAAGATATTATTTTGTTACTCTATGTTATG
1 AAGTTATCAAGAAGGAAAAGTCAATATATAAGATATTATTTTGTTACTCCATGTTATG
7618338 TATTGTATAC
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.39, C:0.08, G:0.16, T:0.37
Consensus pattern (58 bp):
AAGTTATCAAGAAGGAAAAGTCAATATATAAGATATTATTTTGTTACTCCATGTTATG
Found at i:7621629 original size:33 final size:33
Alignment explanation
Indices: 7621587--7621706 Score: 127
Period size: 33 Copynumber: 3.6 Consensus size: 33
7621577 CTCATCTGCC
*
7621587 TCAGCTTGTACACCTTCTACATCACCCTCCCCA
1 TCAGCTTGTACACCTTCTACATCACCTTCCCCA
* *
7621620 TCAGCTTGTATC-TCTTCTATATCACCTTCCCCA
1 TCAGCTTGTA-CACCTTCTACATCACCTTCCCCA
* * * * * *
7621653 TAAACTTCTACCCCTTCAACATCACATTCCCCAA
1 TCAGCTTGTACACCTTCTACATCACCTTCCCC-A
7621687 T-AGCTTGTACACCTTCTACA
1 TCAGCTTGTACACCTTCTACA
7621707 ACGCCATCCC
Statistics
Matches: 70, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
32 1 0.01
33 66 0.94
34 3 0.04
ACGTcount: A:0.24, C:0.39, G:0.05, T:0.32
Consensus pattern (33 bp):
TCAGCTTGTACACCTTCTACATCACCTTCCCCA
Found at i:7621830 original size:66 final size:65
Alignment explanation
Indices: 7621659--7621834 Score: 198
Period size: 66 Copynumber: 2.7 Consensus size: 65
7621649 CCCATAAACT
* *
7621659 TCTACCCCTTCAACATCACATTCC-CCA-ATAGCTTGTACACCTTCTACAACGCCATCCCTATCT
1 TCTACCCCTTCAACATCAC---CCTCCATACAGCTTGTACTCCTTCTACAACGCCATCCCTATCT
7621722 AAA
63 AAA
* * *
7621725 TTTACCCCTTCAACATCACCCTCCATAACAACTTGTACTCCTTCTACAACGCCAT-CTTCATCTA
1 TCTACCCCTTCAACATCACCCTCCAT-ACAGCTTGTACTCCTTCTACAACGCCATCCCT-ATCTA
7621789 AA
64 AA
* *
7621791 TCTACCCTTTCAACATCACCCTTCTCAT-CAGCTTCTACTCCTTC
1 TCTACCCCTTCAACATCACCC-TC-CATACAGCTTGTACTCCTTC
7621835 AACATCACTT
Statistics
Matches: 95, Mismatches: 9, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
63 2 0.02
64 3 0.03
65 2 0.02
66 83 0.87
67 2 0.02
68 3 0.03
ACGTcount: A:0.26, C:0.40, G:0.03, T:0.31
Consensus pattern (65 bp):
TCTACCCCTTCAACATCACCCTCCATACAGCTTGTACTCCTTCTACAACGCCATCCCTATCTAAA
Found at i:7628311 original size:22 final size:24
Alignment explanation
Indices: 7628285--7628345 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
7628275 TTTTTTGAAT
7628285 TTTTAAAAAAATATTT-AT-ATTA
1 TTTTAAAAAAATATTTAATAATTA
***
7628307 TTTTAATTTAATATTTAATAATTA
1 TTTTAAAAAAATATTTAATAATTA
7628331 TTTTAAAAAAATATT
1 TTTTAAAAAAATATT
7628346 ATTATTAATA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
22 13 0.42
23 2 0.06
24 16 0.52
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (24 bp):
TTTTAAAAAAATATTTAATAATTA
Found at i:7633779 original size:9 final size:9
Alignment explanation
Indices: 7633765--7633791 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
7633755 CTCAAATTCA
7633765 AATTAATTT
1 AATTAATTT
7633774 AATTAATTT
1 AATTAATTT
7633783 AATTAATTT
1 AATTAATTT
7633792 TTAATTTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
AATTAATTT
Found at i:7639040 original size:17 final size:17
Alignment explanation
Indices: 7639015--7639061 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
7639005 TAATTAAGCT
*
7639015 AAAATAAATGAAAA-ATA
1 AAAAAAAAT-AAAAGATA
7639032 AAAAAAAATAAAAGATA
1 AAAAAAAATAAAAGATA
* *
7639049 ACAAAAACTAAAA
1 AAAAAAAATAAAA
7639062 ACCGGATTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
16 4 0.15
17 22 0.85
ACGTcount: A:0.79, C:0.04, G:0.04, T:0.13
Consensus pattern (17 bp):
AAAAAAAATAAAAGATA
Found at i:7641457 original size:25 final size:25
Alignment explanation
Indices: 7641412--7641459 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
7641402 CTTTACTGTT
7641412 TAAAAATAATAATAAAATAATAAAA
1 TAAAAATAATAATAAAATAATAAAA
* * *
7641437 TAAAAATTATATTAATATAATAA
1 TAAAAATAATAATAAAATAATAA
7641460 TAATTAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (25 bp):
TAAAAATAATAATAAAATAATAAAA
Found at i:7645402 original size:20 final size:20
Alignment explanation
Indices: 7645377--7645416 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
7645367 TAATTTAAAA
*
7645377 TATTTTTAAAATACTTTTTT
1 TATTTTTAAAATAATTTTTT
7645397 TATTTTTAAAATAATTTTTT
1 TATTTTTAAAATAATTTTTT
7645417 GGTGTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (20 bp):
TATTTTTAAAATAATTTTTT
Found at i:7645424 original size:20 final size:20
Alignment explanation
Indices: 7645381--7645424 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
7645371 TTAAAATATT
* * *
7645381 TTTAAAATACTTTTTTTATT
1 TTTAAAATAATTTTTTGATG
*
7645401 TTTAAAATAATTTTTTGGTG
1 TTTAAAATAATTTTTTGATG
7645421 TTTA
1 TTTA
7645425 TTAAAAAATG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.61
Consensus pattern (20 bp):
TTTAAAATAATTTTTTGATG
Found at i:7649734 original size:22 final size:22
Alignment explanation
Indices: 7649709--7649753 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7649699 TACTCATATA
7649709 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
7649731 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
7649753 A
1 A
7649754 ATTTAATATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:7649812 original size:16 final size:15
Alignment explanation
Indices: 7649772--7649812 Score: 52
Period size: 13 Copynumber: 2.9 Consensus size: 15
7649762 TTTCAATTTT
7649772 ATTTT-AATAATAAA
1 ATTTTAAATAATAAA
7649786 A-TTTAAA-AATAATA
1 ATTTTAAATAATAA-A
7649800 ATTTTAAATAATA
1 ATTTTAAATAATA
7649813 TTATTCACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
13 8 0.35
14 5 0.22
15 6 0.26
16 4 0.17
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
ATTTTAAATAATAAA
Found at i:7652780 original size:67 final size:67
Alignment explanation
Indices: 7652709--7652835 Score: 154
Period size: 67 Copynumber: 1.9 Consensus size: 67
7652699 TTTTGCTATG
*
7652709 TTATTATTAAATTAATT-AATTAACTA-TTATCAT-CATTATTAT-TTTCCTTTTATTTATTTAC
1 TTATTACTAAATT-ATTAAATTAACTAGTT-T--TGCATTATTATATTTCCTTTTATTTATTTAC
7652770 TTATTA
62 TTATTA
* * *
7652776 TTATTACTATATTGTTAAATTAATTAGTTTTGCATTATTATATTTCCTTTTATTTATTTA
1 TTATTACTAAATTATTAAATTAACTAGTTTTGCATTATTATATTTCCTTTTATTTATTTA
7652836 TCTAAATATT
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
65 1 0.02
66 11 0.21
67 38 0.73
68 2 0.04
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.59
Consensus pattern (67 bp):
TTATTACTAAATTATTAAATTAACTAGTTTTGCATTATTATATTTCCTTTTATTTATTTACTTAT
TA
Found at i:7655078 original size:11 final size:11
Alignment explanation
Indices: 7655060--7655101 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
7655050 ACAATAACAA
7655060 CAAAATAATAG
1 CAAAATAATAG
*
7655071 CAATATAATAG
1 CAAAATAATAG
*
7655082 CAAAATGATAG
1 CAAAATAATAG
7655093 CAAAATAAT
1 CAAAATAAT
7655102 GAAAAAATAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.60, C:0.10, G:0.10, T:0.21
Consensus pattern (11 bp):
CAAAATAATAG
Found at i:7655078 original size:22 final size:22
Alignment explanation
Indices: 7655052--7655100 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
7655042 ATATCCAAAC
7655052 AATAACAACAAAATAATAGCAA
1 AATAACAACAAAATAATAGCAA
* * * *
7655074 TATAATAGCAAAATGATAGCAA
1 AATAACAACAAAATAATAGCAA
7655096 AATAA
1 AATAA
7655101 TGAAAAAATA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.63, C:0.10, G:0.08, T:0.18
Consensus pattern (22 bp):
AATAACAACAAAATAATAGCAA
Found at i:7655109 original size:22 final size:22
Alignment explanation
Indices: 7655061--7655107 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
7655051 CAATAACAAC
* *
7655061 AAAATAATAGCAATATAATAGC
1 AAAATAATAGCAAAATAATAGA
*
7655083 AAAATGATAGCAAAATAAT-GA
1 AAAATAATAGCAAAATAATAGA
7655104 AAAA
1 AAAA
7655108 ATAGTGAGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.64, C:0.06, G:0.11, T:0.19
Consensus pattern (22 bp):
AAAATAATAGCAAAATAATAGA
Found at i:7660531 original size:18 final size:19
Alignment explanation
Indices: 7660491--7660544 Score: 62
Period size: 18 Copynumber: 3.0 Consensus size: 19
7660481 CAATTTGAAT
7660491 GAAA-AAAAAGCAAAA-AAA
1 GAAAGAAAAAG-AAAAGAAA
*
7660509 AAAAGAAAAAG-AAAGAAA
1 GAAAGAAAAAGAAAAGAAA
7660527 GAAAG-AAAAGAAAAGAAA
1 GAAAGAAAAAGAAAAGAAA
7660545 AGCTAAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
17 8 0.26
18 17 0.55
19 6 0.19
ACGTcount: A:0.81, C:0.02, G:0.17, T:0.00
Consensus pattern (19 bp):
GAAAGAAAAAGAAAAGAAA
Found at i:7660536 original size:5 final size:5
Alignment explanation
Indices: 7660491--7660546 Score: 52
Period size: 5 Copynumber: 12.2 Consensus size: 5
7660481 CAATTTGAAT
*
7660491 GAAAA -AAAA GCAAA -AAAA -AAAA GAAAA -AGAAA G-AAA G-AAA GAAAA
1 GAAAA GAAAA GAAAA GAAAA GAAAA GAAAA GA-AAA GAAAA GAAAA GAAAA
7660536 GAAAA GAAAA G
1 GAAAA GAAAA G
7660547 CTAAAATTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
4 20 0.45
5 24 0.55
ACGTcount: A:0.80, C:0.02, G:0.18, T:0.00
Consensus pattern (5 bp):
GAAAA
Found at i:7660546 original size:23 final size:22
Alignment explanation
Indices: 7660491--7660552 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 22
7660481 CAATTTGAAT
7660491 GAAAAAAAAGCAAAAAAAAAAA
1 GAAAAAAAAGCAAAAAAAAAAA
*
7660513 GAAAAAGAAAG-AAAGAAAGAAAA
1 GAAAAA-AAAGCAAA-AAAAAAAA
*
7660536 GAAAAGAAAAGCTAAAA
1 GAAAA-AAAAGCAAAAA
7660553 TTATTGTGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
22 9 0.26
23 22 0.65
24 3 0.09
ACGTcount: A:0.79, C:0.03, G:0.16, T:0.02
Consensus pattern (22 bp):
GAAAAAAAAGCAAAAAAAAAAA
Found at i:7663846 original size:47 final size:47
Alignment explanation
Indices: 7663785--7663927 Score: 218
Period size: 47 Copynumber: 3.1 Consensus size: 47
7663775 GTAATAAGGC
*
7663785 GAATCATTGTTCAATGAGATCGTTTGGGATTATGATCAATATGTGTA
1 GAATAATTGTTCAATGAGATCGTTTGGGATTATGATCAATATGTGTA
7663832 GAATAATTGTTCAATGAGATCGTTTGGGATTATGATCAATATGTGTA
1 GAATAATTGTTCAATGAGATCGTTTGGGATTATGATCAATATGTGTA
* * * *
7663879 GAATAATTATTCAATGAAATCGTTTGAGATTAT-ATTGAATATGTG-A
1 GAATAATTGTTCAATGAGATCGTTTGGGATTATGA-TCAATATGTGTA
7663925 GAA
1 GAA
7663928 CTGATTAACA
Statistics
Matches: 90, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
46 5 0.06
47 85 0.94
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.38
Consensus pattern (47 bp):
GAATAATTGTTCAATGAGATCGTTTGGGATTATGATCAATATGTGTA
Found at i:7665683 original size:3 final size:3
Alignment explanation
Indices: 7665675--7665705 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
7665665 AACTAATACA
*
7665675 AAT AAT AAT ATT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
7665706 GTTAAGTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:7667054 original size:16 final size:16
Alignment explanation
Indices: 7667033--7667100 Score: 102
Period size: 16 Copynumber: 4.2 Consensus size: 16
7667023 TTTGGTTCGC
7667033 TGTATTGGATTAGAGA
1 TGTATTGGATTAGAGA
7667049 TGTATTGGATTAGA-A
1 TGTATTGGATTAGAGA
*
7667064 GTGTATTGGATTAGAGG
1 -TGTATTGGATTAGAGA
*
7667081 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGA
7667097 TGTA
1 TGTA
7667101 ATAGCAAATT
Statistics
Matches: 49, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
15 1 0.02
16 48 0.98
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGA
Found at i:7667072 original size:32 final size:32
Alignment explanation
Indices: 7667033--7667100 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
7667023 TTTGGTTCGC
7667033 TGTATTGGATTAGAGATGTATTGGATTAGAAG
1 TGTATTGGATTAGAGATGTATTGGATTAGAAG
* *
7667065 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGATGTATTGGATTAGAAG
7667097 TGTA
1 TGTA
7667101 ATAGCAAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGATGTATTGGATTAGAAG
Found at i:7667424 original size:157 final size:157
Alignment explanation
Indices: 7667230--7667539 Score: 539
Period size: 157 Copynumber: 2.0 Consensus size: 157
7667220 CCCTTAGCAT
*
7667230 AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAA
1 AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
7667295 TAATAAATATTTTAATCATATTTAAACATAATTATTATTAAACATATTTTAATTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
7667360 TTTAATAAAATTCTTAATAATTACCAG
131 TTTAATAAAATTCTTAATAATTACCAG
* * * *
7667387 AAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTGATAAGATTATTAATATGAA
1 AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
7667452 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATACTTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
7667517 TTTAATAAAATTCTTAATAATTA
131 TTTAATAAAATTCTTAATAATTA
7667540 ATATTCTTAT
Statistics
Matches: 144, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
157 144 1.00
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (157 bp):
AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
TTTAATAAAATTCTTAATAATTACCAG
Found at i:7667536 original size:82 final size:81
Alignment explanation
Indices: 7667293--7667542 Score: 186
Period size: 76 Copynumber: 3.1 Consensus size: 81
7667283 TATTATTATC
* * *
7667293 AATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAACATATTTTAATTAAAATATAT
1 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTAT-ATTAAAATATAT
7667358 AATTTAATAAAATTCTT
65 AATTTAATAAAATTCTT
* * * * *
7667375 AATAATTACCAGA-AATTT-GT--T-TTGGT-AA-ATTATTATTGTT--AT-TGTTAT-TTAAAT
1 AATAA-TA--A-ATAATTTAATCATATT--TAAACATAATTATTATTAAATATATTATATTAAAA
* * * * *
7667429 TTTGATAAGATT-AT-TAA-TATG
60 TAT-ATAA-TTTAATAAAATTCTT
7667450 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATACTTAAAATATAT
1 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATA-TTAAAATATAT
7667515 AATTTAATAAAATTCTT
65 AATTTAATAAAATTCTT
*
7667532 AATAATTAATA
1 AATAATAAATA
7667543 TTCTTATATG
Statistics
Matches: 121, Mismatches: 24, Indels: 46
0.63 0.13 0.24
Matches are distributed among these distances:
71 1 0.01
72 6 0.05
73 1 0.01
74 3 0.02
75 10 0.08
76 21 0.17
77 6 0.05
78 8 0.07
79 8 0.07
80 6 0.05
81 21 0.17
82 20 0.17
83 3 0.02
84 1 0.01
85 5 0.04
86 1 0.01
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.46
Consensus pattern (81 bp):
AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATATTAAAATATATA
ATTTAATAAAATTCTT
Found at i:7667613 original size:157 final size:155
Alignment explanation
Indices: 7667276--7667597 Score: 349
Period size: 157 Copynumber: 2.0 Consensus size: 155
7667266 TTAAATTTTA
* * * *
7667276 ATAAGATTATTATTATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAACATA
1 ATAAGATTATGAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATA
* * * * * ** *
7667341 TTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTACCAGAAATTTGTTTTGGTAAATT
66 TTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACACAAATATGATTTACTAAATC
* * * * *
7667406 ATTATTGTTATTGTTATTTAAATTTTG
131 ATAATTATTATTGATATATAAA--TAG
* *
7667433 ATAAGATTATTAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATA
1 ATAAGATTATGAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATA
* * **
7667498 TTATACTTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCA
66 TTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACA--CAAATATG-ATTTACT-A
7667563 AATCATAATATATTATATGATACTATAAA-AG
127 AATCATAAT-TATTAT-TGATA-TATAAATAG
7667594 ATAA
1 ATAA
7667598 TTTGAAATAA
Statistics
Matches: 137, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
157 102 0.74
159 4 0.03
160 4 0.03
161 13 0.09
162 5 0.04
163 4 0.03
164 5 0.04
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.45
Consensus pattern (155 bp):
ATAAGATTATGAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATA
TTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACACAAATATGATTTACTAAATC
ATAATTATTATTGATATATAAATAG
Found at i:7671761 original size:23 final size:23
Alignment explanation
Indices: 7671735--7671823 Score: 61
Period size: 25 Copynumber: 3.7 Consensus size: 23
7671725 TTTAAATATA
7671735 TATATATATTTTAAAAAAATGCG
1 TATATATATTTTAAAAAAATGCG
* * *
7671758 TATATATTATATATAAAAATATGTG
1 TATATA-TAT-TTTAAAAAAATGCG
* * ** * *
7671783 TGTTTAATACATAAAAAAAATGCA
1 TATAT-ATATTTTAAAAAAATGCG
*
7671807 TATATATATTGTAAAAA
1 TATATATATTTTAAAAA
7671824 CCATGCGTGC
Statistics
Matches: 45, Mismatches: 18, Indels: 6
0.65 0.26 0.09
Matches are distributed among these distances:
23 14 0.31
24 14 0.31
25 16 0.36
26 1 0.02
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.38
Consensus pattern (23 bp):
TATATATATTTTAAAAAAATGCG
Found at i:7671774 original size:25 final size:25
Alignment explanation
Indices: 7671731--7671813 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
7671721 AAGCTTTAAA
*
7671731 TATATATATATATTTTAAAAAAATGCG
1 TATATAT-TATA-TATAAAAAAATGCG
* *
7671758 TATATATTATATATAAAAATATGTG
1 TATATATTATATATAAAAAAATGCG
* * * * *
7671783 TGTTTAATACATA-AAAAAAATGCA
1 TATATATTATATATAAAAAAATGCG
7671807 TATATAT
1 TATATAT
7671814 ATTGTAAAAA
Statistics
Matches: 43, Mismatches: 13, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
24 12 0.28
25 20 0.47
26 4 0.09
27 7 0.16
ACGTcount: A:0.49, C:0.04, G:0.07, T:0.40
Consensus pattern (25 bp):
TATATATTATATATAAAAAAATGCG
Found at i:7673673 original size:44 final size:45
Alignment explanation
Indices: 7673577--7673673 Score: 101
Period size: 44 Copynumber: 2.2 Consensus size: 45
7673567 CACTAGTGCT
* * * *
7673577 TAGGGAGATAAGATCTGTAATCTTCAATCTACTTCGCCACCACTA
1 TAGGAAGATAAAATCTGTAATATTCAATCCACTTCGCCACCACTA
* *
7673622 T-GAGAAGATAAAATCTGT-ATATTCGATCCACTTCGCTACCGA-TA
1 TAG-GAAGATAAAATCTGTAATATTCAATCCACTTCGCCACC-ACTA
7673666 TAGGAAGA
1 TAGGAAGA
7673674 CAGGACCTGC
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
44 27 0.63
45 16 0.37
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.28
Consensus pattern (45 bp):
TAGGAAGATAAAATCTGTAATATTCAATCCACTTCGCCACCACTA
Found at i:7673741 original size:44 final size:44
Alignment explanation
Indices: 7673686--7674221 Score: 399
Period size: 44 Copynumber: 12.1 Consensus size: 44
7673676 GGACCTGCTA
* * **
7673686 TCTTTGATCTACTCCACGCCAGTACATGAAGATAAGATCTATTT
1 TCTTTGATCTACTCCACACCAGTACATGAAGACAAGATCTGGTT
* *** *
7673730 TCTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATCT-GTT
1 TCTTTGATCTACTCCA-CACCAGTACATGAAGACAAGATCTGGTT
* * * *
7673774 TCTTTGATCTGCTTCGC-CACCAGTATGA-GAAGGCAAGATCTGGTA
1 TCTTTGATCTAC-TC-CACACCAGTA-CATGAAGACAAGATCTGGTT
* * *
7673819 TCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTT
1 TCTTTGATCTACTCCACACCAGTACATGAAGACAAGATCTGGTT
* *** *
7673863 TCTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATCT-GTT
1 TCTTTGATCTACTCCA-CACCAGTACATGAAGACAAGATCTGGTT
* * * *
7673907 TCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATTTGTTT
1 TCTTTGATCTACTCCACACCAGTACATGAAGACAAGATCTGGTT
* *** *
7673951 TCTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATCT-GTT
1 TCTTTGATCTACTCCA-CACCAGTACATGAAGACAAGATCTGGTT
* * *
7673995 TCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTT
1 TCTTTGATCTACTCCACACCAGTACATGAAGACAAGATCTGGTT
* * * * * *
7674039 TCTTTGATCTGCTTCGC-CACCGGTATAGGAAGGCAAGATCTAGTAT
1 TCTTTGATCTAC-TC-CACACCAGTACATGAAGACAAGATCTGGT-T
* * * * * * *
7674085 T-TCTGATCTATTTCACGCTAGTACATGAAGGCAAGATCTGTTT
1 TCTTTGATCTACTCCACACCAGTACATGAAGACAAGATCTGGTT
* * * * *
7674128 TCTTTGATCTGCTTCGC-CACCGGTATGA-GAAGGCAAGATCTGGTA
1 TCTTTGATCTAC-TC-CACACCAGTA-CATGAAGACAAGATCTGGTT
* * *
7674173 TCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCT-GTT
1 TCTTTGATCTACTCCACACCAGTACATGAAGACAAGATCTGGTT
7674216 ATCTTT
1 -TCTTT
7674222 CAACCTACTC
Statistics
Matches: 375, Mismatches: 95, Indels: 44
0.73 0.18 0.09
Matches are distributed among these distances:
43 46 0.12
44 194 0.52
45 129 0.34
46 6 0.02
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (44 bp):
TCTTTGATCTACTCCACACCAGTACATGAAGACAAGATCTGGTT
Found at i:7673853 original size:88 final size:88
Alignment explanation
Indices: 7673760--7674221 Score: 642
Period size: 88 Copynumber: 5.2 Consensus size: 88
7673750 CAGTATGGGG
7673760 AGACAAGATCTG-TTTCTTTGATCTGCTTCGCCACCAGTATGAGAAGGCAAGATCTGGTATCTTT
1 AGACAAGATCTGTTTTCTTTGATCTGCTTCGCCACCAGTATGAGAAGGCAAGATCT-GTATCTTT
7673824 GATCTACTTCACGCCAGTACATGA
65 GATCTACTTCACGCCAGTACATGA
* * * * * * * *
7673848 AGACAAGATCTGTTTTCTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATCTGTTTCTTTG
1 AGACAAGATCTGTTTTCTTTGATCTGCTTCGCCACCAGTATGAGAAGGCAAGATCTGTATCTTTG
7673913 ATCTACTTCACGCCAGTACATGA
66 ATCTACTTCACGCCAGTACATGA
* * * * * * * * *
7673936 AGACAAGATTTGTTTTCTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATCTGTTTCTTTG
1 AGACAAGATCTGTTTTCTTTGATCTGCTTCGCCACCAGTATGAGAAGGCAAGATCTGTATCTTTG
7674001 ATCTACTTCACGCCAGTACATGA
66 ATCTACTTCACGCCAGTACATGA
*
7674024 AGACAAGATCTGTTTTCTTTGATCTGCTTCGCCACCGGTAT-AGGAAGGCAAGATCTAGTAT-TT
1 AGACAAGATCTGTTTTCTTTGATCTGCTTCGCCACCAGTATGA-GAAGGCAAGATCT-GTATCTT
* *
7674087 CTGATCTATTTCACGCTAGTACATGA
64 -TGATCTACTTCACGCCAGTACATGA
* * *
7674113 AGGCAAGATCTGTTTTCTTTGATCTGCTTCGCCACCGGTATGAGAAGGCAAGATCTGGTATCTCT
1 AGACAAGATCTGTTTTCTTTGATCTGCTTCGCCACCAGTATGAGAAGGCAAGATCT-GTATCTTT
7674178 GATCTACTTCACGCCAGTACATGA
65 GATCTACTTCACGCCAGTACATGA
*
7674202 AGACAAGATCTGTTATCTTT
1 AGACAAGATCTGTTTTCTTT
7674222 CAACCTACTC
Statistics
Matches: 340, Mismatches: 28, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
88 178 0.52
89 160 0.47
90 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.32
Consensus pattern (88 bp):
AGACAAGATCTGTTTTCTTTGATCTGCTTCGCCACCAGTATGAGAAGGCAAGATCTGTATCTTTG
ATCTACTTCACGCCAGTACATGA
Found at i:7674209 original size:133 final size:133
Alignment explanation
Indices: 7673586--7674212 Score: 533
Period size: 133 Copynumber: 4.7 Consensus size: 133
7673576 TTAGGGAGAT
** * * * * * * * * * *
7673586 AAGATCTGTAATCTTCAATCTACTTCGCCACCACTATGAGAAGATAAAATCTGTATATTCGATCC
1 AAGATCTGTTTTCTTCGATCTACTCCACCACCAGTATGAGAAGACAAGATCTGTTTCTTTGATCT
* * * *
7673651 ACTTCG-CTACC-GATATAGGAAGACAGGACCT-GCTATCTT-TGATCTACTCCACGCCAGTACA
66 ACTTCGAC-ACCAG-TACATGAAGACAAGATCTAG-TAT-TTCTGATCTACTCCACGCCAGTACA
*
7673712 TGAAGAT
127 TGAAGAC
* * *
7673719 AAGATCTATTTTCTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATCTGTTTCTTTGATCT
1 AAGATCTGTTTTCTTCGATCTACTCCACCACCAGTATGAGAAGACAAGATCTGTTTCTTTGATCT
* * * * * *
7673784 GCTTCGCCACCAGTATGA-GAAGGCAAGATCTGGTATCTT-TGATCTACTTCACGCCAGTACATG
66 ACTTCGACACCAGTA-CATGAAGACAAGATCTAGTAT-TTCTGATCTACTCCACGCCAGTACATG
7673847 AAGAC
129 AAGAC
* *
7673852 AAGATCTGTTTTCTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATCTGTTTCTTTGATCT
1 AAGATCTGTTTTCTTCGATCTACTCCACCACCAGTATGAGAAGACAAGATCTGTTTCTTTGATCT
* * * ***
7673917 ACTTC-ACGCCAGTACATGAAGACAAGAT-TTGT-TTTCTTCGATCTACTCCACCACCAGTATGG
66 ACTTCGACACCAGTACATGAAGACAAGATCTAGTATTTC-T-GATCTACTCCA-CGCCAGTACAT
*
7673979 GGAGAC
128 GAAGAC
* * * *
7673985 AAGATCTG-TTTCTTTGATCTACTTCA-CGCCAGTA-CATGAAGACAAGATCTGTTTTCTTTGAT
1 AAGATCTGTTTTCTTCGATCTACTCCACCACCAGTATGA-GAAGACAAGATCTG-TTTCTTTGAT
* * * * * * * * *
7674047 CTGCTTCGCCACCGGTATAGGAAGGCAAGATCTAGTATTTCTGATCTATTTCACGCTAGTACATG
64 CTACTTCGACACCAGTACATGAAGACAAGATCTAGTATTTCTGATCTACTCCACGCCAGTACATG
*
7674112 AAGGC
129 AAGAC
* * * * * * * *
7674117 AAGATCTGTTTTCTTTGATCTGCTTCGCCACCGGTATGAGAAGGCAAGATCTGGTATCTCTGATC
1 AAGATCTGTTTTCTTCGATCTACTCCACCACCAGTATGAGAAGACAAGATCT-GTTTCTTTGATC
*
7674182 TACTTC-ACGCCAGTACATGAAGACAAGATCT
65 TACTTCGACACCAGTACATGAAGACAAGATCT
7674213 GTTATCTTTC
Statistics
Matches: 403, Mismatches: 73, Indels: 36
0.79 0.14 0.07
Matches are distributed among these distances:
129 2 0.00
130 1 0.00
131 25 0.06
132 77 0.19
133 252 0.63
134 40 0.10
135 6 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (133 bp):
AAGATCTGTTTTCTTCGATCTACTCCACCACCAGTATGAGAAGACAAGATCTGTTTCTTTGATCT
ACTTCGACACCAGTACATGAAGACAAGATCTAGTATTTCTGATCTACTCCACGCCAGTACATGAA
GAC
Found at i:7686042 original size:24 final size:24
Alignment explanation
Indices: 7686014--7686072 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 24
7686004 TCATAAAAGC
7686014 TTAAAAATAT-ATATATATATATAT
1 TTAAAAATATCATATATAT-TATAT
* *
7686038 TTAAAAAAATGCGTATATATTATAT
1 TTAAAAATAT-CATATATATTATAT
*
7686063 ATAAAAATAT
1 TTAAAAATAT
7686073 GTGTGTTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 9 0.31
25 13 0.45
26 7 0.24
ACGTcount: A:0.54, C:0.02, G:0.03, T:0.41
Consensus pattern (24 bp):
TTAAAAATATCATATATATTATAT
Found at i:7686061 original size:25 final size:25
Alignment explanation
Indices: 7686025--7686109 Score: 77
Period size: 25 Copynumber: 3.5 Consensus size: 25
7686015 TAAAAATATA
*
7686025 TATATATATATATTTAAAAAAATGCG
1 TATATAT-TATATATAAAAAAATGCG
* *
7686051 TATATATTATATATAAAAATATGTG
1 TATATATTATATATAAAAAAATGCG
* * * *
7686076 TGT-T-TAATACATAAAAAAATGCA
1 TATATATTATATATAAAAAAATGCG
7686099 TATATA-TATAT
1 TATATATTATAT
7686110 TGTAAAAACC
Statistics
Matches: 45, Mismatches: 12, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
23 16 0.36
24 5 0.11
25 17 0.38
26 7 0.16
ACGTcount: A:0.49, C:0.04, G:0.07, T:0.40
Consensus pattern (25 bp):
TATATATTATATATAAAAAAATGCG
Found at i:7687904 original size:14 final size:14
Alignment explanation
Indices: 7687885--7687929 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
7687875 TTAATTTTCG
7687885 TAAAATATAAAAAC
1 TAAAATATAAAAAC
* *
7687899 TAAAATTTGAAAAAT
1 TAAAATAT-AAAAAC
*
7687914 TAAAATATAAAGAC
1 TAAAATATAAAAAC
7687928 TA
1 TA
7687930 CCCTCTCAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.27
Consensus pattern (14 bp):
TAAAATATAAAAAC
Found at i:7691114 original size:36 final size:36
Alignment explanation
Indices: 7691074--7691159 Score: 154
Period size: 36 Copynumber: 2.4 Consensus size: 36
7691064 ATCTTGCCCG
*
7691074 AAACGACGTCGTTTTGGGGTTTATGGAACCAGGCCA
1 AAACGACGTCGTTTTGGAGTTTATGGAACCAGGCCA
*
7691110 AAACGATGTCGTTTTGGAGTTTATGGAACCAGGCCA
1 AAACGACGTCGTTTTGGAGTTTATGGAACCAGGCCA
7691146 AAACGACGTCGTTT
1 AAACGACGTCGTTT
7691160 CAATACCCTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 47 1.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (36 bp):
AAACGACGTCGTTTTGGAGTTTATGGAACCAGGCCA
Found at i:7692550 original size:18 final size:18
Alignment explanation
Indices: 7692529--7692564 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
7692519 GTAGAACCAT
7692529 GCCTTAGTGTATCTACAG
1 GCCTTAGTGTATCTACAG
7692547 GCCTTAGTGTATCTACAG
1 GCCTTAGTGTATCTACAG
7692565 TGAACTTGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (18 bp):
GCCTTAGTGTATCTACAG
Found at i:7692716 original size:18 final size:18
Alignment explanation
Indices: 7692695--7692730 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
7692685 GTAGAACCAT
7692695 GCCTTAGTGTATCTACAG
1 GCCTTAGTGTATCTACAG
7692713 GCCTTAGTGTATCTACAG
1 GCCTTAGTGTATCTACAG
7692731 TGAACTTGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (18 bp):
GCCTTAGTGTATCTACAG
Found at i:7692719 original size:166 final size:166
Alignment explanation
Indices: 7692445--7692780 Score: 645
Period size: 166 Copynumber: 2.0 Consensus size: 166
7692435 TCTTTGAAAC
7692445 AAATTAAGAGTACATTCCTAAATGAAGATGAAGAGAGAATGCTTAATGCCAAAAGACAAATGGCA
1 AAATTAAGAGTACATTCCTAAATGAAGATGAAGAGAGAATGCTTAATGCCAAAAGACAAATGGCA
*
7692510 GTAGCTTTTGTAGAACCATGCCTTAGTGTATCTACAGGCCTTAGTGTATCTACAGTGAACTTGTC
66 GTAGCTTTTGTAGAACCATGCCTTAGTGTATCTACAGGCCTTAGTGTATCTACAGTGAACTTGGC
*
7692575 TAAGTGGAACATCGGATCGAGTCTGTCATATATTAT
131 TAAGTGGAACATCGGATCGAGCCTGTCATATATTAT
*
7692611 AAATTAAGAGTACATTCCTAAATGAATATGAAGAGAGAATGCTTAATGCCAAAAGACAAATGGCA
1 AAATTAAGAGTACATTCCTAAATGAAGATGAAGAGAGAATGCTTAATGCCAAAAGACAAATGGCA
7692676 GTAGCTTTTGTAGAACCATGCCTTAGTGTATCTACAGGCCTTAGTGTATCTACAGTGAACTTGGC
66 GTAGCTTTTGTAGAACCATGCCTTAGTGTATCTACAGGCCTTAGTGTATCTACAGTGAACTTGGC
7692741 TAAGTGGAACATCGGATCGAGCCTGTCATATATTAT
131 TAAGTGGAACATCGGATCGAGCCTGTCATATATTAT
7692777 AAAT
1 AAAT
7692781 GGAGATTACA
Statistics
Matches: 167, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
166 167 1.00
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.29
Consensus pattern (166 bp):
AAATTAAGAGTACATTCCTAAATGAAGATGAAGAGAGAATGCTTAATGCCAAAAGACAAATGGCA
GTAGCTTTTGTAGAACCATGCCTTAGTGTATCTACAGGCCTTAGTGTATCTACAGTGAACTTGGC
TAAGTGGAACATCGGATCGAGCCTGTCATATATTAT
Found at i:7695112 original size:42 final size:42
Alignment explanation
Indices: 7695046--7695204 Score: 149
Period size: 42 Copynumber: 3.7 Consensus size: 42
7695036 CAAAAAGAAC
* * * * *
7695046 GTATAATTCATGGACAATATTACTTGGCTTAATGTATGGCAT
1 GTATGATTCATGAACAATAGTACTTAGTTTAATGTATGGCAT
*
7695088 GTATGATTCATGAACAATAGTACTTAGTTTAATGTATGCCAT
1 GTATGATTCATGAACAATAGTACTTAGTTTAATGTATGGCAT
* * *
7695130 GCATGATGTATGAT-ATGAACAATAGTACTCAATTTAAAGTATGGCAT
1 G--T-ATG-AT--TCATGAACAATAGTACTTAGTTTAATGTATGGCAT
* * *
7695177 GTATGATGCATGAACGATGGTACTTAGT
1 GTATGATTCATGAACAATAGTACTTAGT
7695205 AAAAAGCACG
Statistics
Matches: 95, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
42 52 0.55
43 2 0.02
44 4 0.04
45 4 0.04
46 2 0.02
47 30 0.32
48 1 0.01
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.35
Consensus pattern (42 bp):
GTATGATTCATGAACAATAGTACTTAGTTTAATGTATGGCAT
Found at i:7695152 original size:47 final size:49
Alignment explanation
Indices: 7695086--7695189 Score: 140
Period size: 47 Copynumber: 2.2 Consensus size: 49
7695076 AATGTATGGC
* * *
7695086 ATGTATGATTCATGAACAATAGTACTTAGTTTAATGTATGCCATGCATG
1 ATGTATGATTCATGAACAATAGTACTCAATTTAAAGTATGCCATGCATG
* *
7695135 ATGTATGA-T-ATGAACAATAGTACTCAATTTAAAGTATGGCATGTATG
1 ATGTATGATTCATGAACAATAGTACTCAATTTAAAGTATGCCATGCATG
*
7695182 ATGCATGA
1 ATGTATGA
7695190 ACGATGGTAC
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
47 40 0.82
48 1 0.02
49 8 0.16
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.35
Consensus pattern (49 bp):
ATGTATGATTCATGAACAATAGTACTCAATTTAAAGTATGCCATGCATG
Found at i:7702968 original size:16 final size:17
Alignment explanation
Indices: 7702944--7702978 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7702934 GAATGGAATT
7702944 AAATGTTTG-AAATTTA
1 AAATGTTTGAAAATTTA
*
7702960 AAATTTTTGAAAATTTA
1 AAATGTTTGAAAATTTA
7702977 AA
1 AA
7702979 TTTGATTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (17 bp):
AAATGTTTGAAAATTTA
Found at i:7702979 original size:16 final size:15
Alignment explanation
Indices: 7702942--7702981 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
7702932 TAGAATGGAA
*
7702942 TTAAATGTTTGAAAT
1 TTAAATTTTTGAAAT
7702957 TTAAAATTTTTGAAAAT
1 TT-AAATTTTTG-AAAT
7702974 TTAAATTT
1 TTAAATTT
7702982 GATTTATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 2 0.09
16 14 0.64
17 6 0.27
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.50
Consensus pattern (15 bp):
TTAAATTTTTGAAAT
Found at i:7703109 original size:75 final size:80
Alignment explanation
Indices: 7702963--7703112 Score: 204
Period size: 75 Copynumber: 1.9 Consensus size: 80
7702953 AAATTTAAAA
* *
7702963 TTTTTGAAAATTTAAATTTGATTTATTTTGAATTTAAATTTTTTAAAAACAAAAACTTAAAATTT
1 TTTTAGAAAAATTAAATTTGATTTATTTTGAATTTAAATTTTTTAAAAACAAAAACTTAAAATTT
7703028 TAAAAGTTAACAAAC
66 TAAAAGTTAACAAAC
* * *
7703043 TTTTAGAAAAATTAAATTTGA-TT-TTTT-ATTTTAAA-TTTTT-GAAATAAAAACTTAAATATT
1 TTTTAGAAAAATTAAATTTGATTTATTTTGAATTTAAATTTTTTAAAAACAAAAACTTAAA-ATT
7703103 TT-AAAGTTAA
65 TTAAAAGTTAA
7703113 GAATTTTTTT
Statistics
Matches: 64, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
75 22 0.34
76 10 0.16
77 7 0.11
78 4 0.06
79 2 0.03
80 19 0.30
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.46
Consensus pattern (80 bp):
TTTTAGAAAAATTAAATTTGATTTATTTTGAATTTAAATTTTTTAAAAACAAAAACTTAAAATTT
TAAAAGTTAACAAAC
Found at i:7704770 original size:17 final size:17
Alignment explanation
Indices: 7704748--7704781 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7704738 TTAAATTAAT
*
7704748 TTAAATTAATTTTCCAA
1 TTAAATAAATTTTCCAA
7704765 TTAAATAAATTTTCCAA
1 TTAAATAAATTTTCCAA
7704782 CCCAATTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (17 bp):
TTAAATAAATTTTCCAA
Found at i:7707133 original size:26 final size:27
Alignment explanation
Indices: 7707080--7707143 Score: 112
Period size: 26 Copynumber: 2.4 Consensus size: 27
7707070 ATAAAAAATA
7707080 ACCAAAATATTATAACTTTTTTTTATTT
1 ACCAAAATATTATAAC-TTTTTTTATTT
7707108 ACCAAAATATTATAA-TTTTTTTATTT
1 ACCAAAATATTATAACTTTTTTTATTT
7707134 ACCAAAATAT
1 ACCAAAATAT
7707144 ACCAAAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
26 21 0.58
28 15 0.42
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (27 bp):
ACCAAAATATTATAACTTTTTTTATTT
Found at i:7707164 original size:14 final size:14
Alignment explanation
Indices: 7707147--7707173 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7707137 AAAATATACC
7707147 AAAAAAAACCTGTA
1 AAAAAAAACCTGTA
7707161 AAAAAAAACCTGT
1 AAAAAAAACCTGT
7707174 GGCGGCACCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.15, G:0.07, T:0.15
Consensus pattern (14 bp):
AAAAAAAACCTGTA
Found at i:7707856 original size:15 final size:15
Alignment explanation
Indices: 7707836--7707865 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7707826 ATTACCAAAA
7707836 TAGAGTTTATTAAAT
1 TAGAGTTTATTAAAT
7707851 TAGAGTTTATTAAAT
1 TAGAGTTTATTAAAT
7707866 GCGAATAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (15 bp):
TAGAGTTTATTAAAT
Found at i:7708181 original size:26 final size:28
Alignment explanation
Indices: 7708149--7708212 Score: 114
Period size: 28 Copynumber: 2.4 Consensus size: 28
7708139 TTTTTTTGGT
7708149 ATATTTTGGTAAAT-AAAAAAA-TTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
7708175 ATATTTTGGTAAATAAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
7708203 ATATTTTGGT
1 ATATTTTGGT
7708213 TACTTTTTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
26 14 0.39
27 7 0.19
28 15 0.42
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (28 bp):
ATATTTTGGTAAATAAAAAAAAGTTATA
Found at i:7709926 original size:13 final size:13
Alignment explanation
Indices: 7709908--7709933 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7709898 AATTAATTTT
7709908 TAAAAAAATAAAA
1 TAAAAAAATAAAA
7709921 TAAAAAAATAAAA
1 TAAAAAAATAAAA
7709934 AAGGACTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
TAAAAAAATAAAA
Found at i:7711235 original size:10 final size:10
Alignment explanation
Indices: 7711217--7711248 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
7711207 ATAATTATAC
*
7711217 TACAAATATT
1 TACATATATT
7711227 TACATATATT
1 TACATATATT
7711237 TACATATATT
1 TACATATATT
7711247 TA
1 TA
7711249 TTACACGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (10 bp):
TACATATATT
Found at i:7711435 original size:22 final size:22
Alignment explanation
Indices: 7711407--7711451 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
7711397 TATTTTCCAT
*
7711407 TTTAGTCCTTTTTCCTAATTAC
1 TTTAGTCATTTTTCCTAATTAC
*
7711429 TTTAGTCATTTTTCCTACTTAC
1 TTTAGTCATTTTTCCTAATTAC
7711451 T
1 T
7711452 CTTAATTAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.22, G:0.04, T:0.56
Consensus pattern (22 bp):
TTTAGTCATTTTTCCTAATTAC
Found at i:7713866 original size:25 final size:26
Alignment explanation
Indices: 7713802--7713866 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 26
7713792 AAGCTCTCTC
*
7713802 TCGAGCCATATAACGGGAAGCTCATG
1 TCGAGCTATATAACGGGAAGCTCATG
*
7713828 T-GAG-TCATGTAACGGGAAGCTCAT-
1 TCGAGCT-ATATAACGGGAAGCTCATG
*
7713852 TCGAGCTATACAACG
1 TCGAGCTATATAACG
7713867 AAAAGTTCAT
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
24 1 0.03
25 29 0.91
26 2 0.06
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.22
Consensus pattern (26 bp):
TCGAGCTATATAACGGGAAGCTCATG
Found at i:7714273 original size:16 final size:17
Alignment explanation
Indices: 7714231--7714273 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
7714221 AATATTTATC
7714231 GAACATTGTCAGATATGT
1 GAACATT-TCAGATATGT
*
7714249 GAACAATTTCATATATGT
1 GAAC-ATTTCAGATATGT
7714267 G-ACATTT
1 GAACATTT
7714274 ATAGAATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 4 0.17
17 2 0.09
18 14 0.61
19 3 0.13
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (17 bp):
GAACATTTCAGATATGT
Found at i:7714479 original size:5 final size:5
Alignment explanation
Indices: 7714469--7714505 Score: 56
Period size: 5 Copynumber: 7.2 Consensus size: 5
7714459 AATTAATAAC
*
7714469 CAATT CAATT CAATT CAATT CAATT GAATT CACATT C
1 CAATT CAATT CAATT CAATT CAATT CAATT CA-ATT C
7714506 TAGGAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
5 25 0.86
6 4 0.14
ACGTcount: A:0.38, C:0.22, G:0.03, T:0.38
Consensus pattern (5 bp):
CAATT
Found at i:7717166 original size:104 final size:104
Alignment explanation
Indices: 7717043--7717266 Score: 360
Period size: 104 Copynumber: 2.2 Consensus size: 104
7717033 AATGGATATC
* *
7717043 GCACTTAGAAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGAT
* *
7717108 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
7717147 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGAT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGAT
* *
7717212 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
7717251 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
7717267 TTTATATACA
Statistics
Matches: 111, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
104 110 0.99
105 1 0.01
ACGTcount: A:0.32, C:0.31, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGAT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:7718778 original size:9 final size:9
Alignment explanation
Indices: 7718764--7718793 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
7718754 CATTAATTAA
7718764 TTAATTTAG
1 TTAATTTAG
7718773 TTAATTTAG
1 TTAATTTAG
7718782 TTAATTTTAG
1 TTAA-TTTAG
7718792 TT
1 TT
7718794 TTTAATCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 13 0.65
10 7 0.35
ACGTcount: A:0.30, C:0.00, G:0.10, T:0.60
Consensus pattern (9 bp):
TTAATTTAG
Found at i:7719678 original size:36 final size:37
Alignment explanation
Indices: 7719603--7719709 Score: 105
Period size: 37 Copynumber: 2.9 Consensus size: 37
7719593 AAAAATAAGG
* **
7719603 AGATGAACATGAGTGATTCTCTGCAAATAAAAGGTGA
1 AGATAAACATGAGTGATTCTCTGCAAATAAAAGACGA
*
7719640 AGATAAACATGAGT-AGTTCTTTGCAAA-AAAAGACGA
1 AGATAAACATGAGTGA-TTCTCTGCAAATAAAAGACGA
* * *
7719676 AGAT-GACA-GATGTGATTCTCTGTAAACAAAAGAC
1 AGATAAACATGA-GTGATTCTCTGCAAATAAAAGAC
7719710 AGAGATGAAT
Statistics
Matches: 59, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
34 2 0.03
35 14 0.24
36 20 0.34
37 23 0.39
ACGTcount: A:0.43, C:0.12, G:0.21, T:0.23
Consensus pattern (37 bp):
AGATAAACATGAGTGATTCTCTGCAAATAAAAGACGA
Found at i:7720044 original size:15 final size:16
Alignment explanation
Indices: 7720014--7720051 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
7720004 TTTTGTTTAC
7720014 AAATTTAAATTTTCAA
1 AAATTTAAATTTTCAA
7720030 AAATTTAAA-TTTCAA
1 AAATTTAAATTTTCAA
*
7720045 AATTTTA
1 AAATTTA
7720052 CTTCCATTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (16 bp):
AAATTTAAATTTTCAA
Found at i:7720460 original size:9 final size:9
Alignment explanation
Indices: 7720433--7720493 Score: 52
Period size: 9 Copynumber: 6.2 Consensus size: 9
7720423 TTAATTTTTT
7720433 AAATATAAA
1 AAATATAAA
7720442 AAAT-TCAAA
1 AAATAT-AAA
7720451 AAATATAAAA
1 AAATAT-AAA
7720461 AAAGTATTTAAA
1 AAA-TA--TAAA
7720473 AAAGTATAAA
1 AAA-TATAAA
*
7720483 AATTATAAA
1 AAATATAAA
7720492 AA
1 AA
7720494 TATTTTTAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
8 1 0.02
9 19 0.42
10 13 0.29
11 2 0.04
12 9 0.20
13 1 0.02
ACGTcount: A:0.70, C:0.02, G:0.03, T:0.25
Consensus pattern (9 bp):
AAATATAAA
Found at i:7728006 original size:17 final size:16
Alignment explanation
Indices: 7727967--7728011 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
7727957 TACTTTATGC
*
7727967 AAAATATTTTTTATTTA
1 AAAATA-TTTTTATTCA
*
7727984 ATAATATTTTTATCTCA
1 AAAATATTTTTAT-TCA
7728001 AAAATATTTTT
1 AAAATATTTTT
7728012 GAAAAGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 7 0.29
17 17 0.71
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (16 bp):
AAAATATTTTTATTCA
Found at i:7733614 original size:13 final size:13
Alignment explanation
Indices: 7733596--7733621 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7733586 ATTTTGGTAC
7733596 TTTTGGTTCAATA
1 TTTTGGTTCAATA
7733609 TTTTGGTTCAATA
1 TTTTGGTTCAATA
7733622 GCATGTATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54
Consensus pattern (13 bp):
TTTTGGTTCAATA
Found at i:7739417 original size:21 final size:21
Alignment explanation
Indices: 7739391--7739507 Score: 135
Period size: 21 Copynumber: 5.6 Consensus size: 21
7739381 GAAGCTTGAA
7739391 AGCTGAACAGAAGCTCATAAG
1 AGCTGAACAGAAGCTCATAAG
* *
7739412 AGCTGAACAGAAACTCTTAAG
1 AGCTGAACAGAAGCTCATAAG
* * *
7739433 AGTTAAACAGAAGCTCTTAAG
1 AGCTGAACAGAAGCTCATAAG
** *
7739454 AGCTGAACAGAAAATCATTAG
1 AGCTGAACAGAAGCTCATAAG
* *
7739475 AGTTGAACAGAAGCTCGTAAG
1 AGCTGAACAGAAGCTCATAAG
*
7739496 AGTTGAACAGAA
1 AGCTGAACAGAA
7739508 AGTAAAACAC
Statistics
Matches: 80, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 80 1.00
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.19
Consensus pattern (21 bp):
AGCTGAACAGAAGCTCATAAG
Found at i:7739444 original size:42 final size:42
Alignment explanation
Indices: 7739396--7739508 Score: 165
Period size: 42 Copynumber: 2.7 Consensus size: 42
7739386 TTGAAAGCTG
*
7739396 AACAGAAGCTCATAAGAGCTGAACAGAAACTC-TTAAGAGTTA
1 AACAGAAGCTCATAAGAGCTGAACAGAAAATCATT-AGAGTTA
* *
7739438 AACAGAAGCTCTTAAGAGCTGAACAGAAAATCATTAGAGTTG
1 AACAGAAGCTCATAAGAGCTGAACAGAAAATCATTAGAGTTA
* *
7739480 AACAGAAGCTCGTAAGAGTTGAACAGAAA
1 AACAGAAGCTCATAAGAGCTGAACAGAAA
7739509 GTAAAACACG
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
42 63 0.97
43 2 0.03
ACGTcount: A:0.45, C:0.15, G:0.21, T:0.19
Consensus pattern (42 bp):
AACAGAAGCTCATAAGAGCTGAACAGAAAATCATTAGAGTTA
Found at i:7739482 original size:63 final size:61
Alignment explanation
Indices: 7739377--7739507 Score: 172
Period size: 63 Copynumber: 2.1 Consensus size: 61
7739367 CAAATGTGCC
** *
7739377 AACAGAAGCTTGAAAGCTGAACAGAAGCTCATAAGAGCTGAACAGAAACTCTTAAGAGTTA
1 AACAGAAGCTTGAAAGCTGAACAGAAAATCATAAGAGCTGAACAGAAACTCGTAAGAGTTA
* * * * *
7739438 AACAGAAGCTCTTAAGAGCTGAACAGAAAATCATTAGAGTTGAACAGAAGCTCGTAAGAGTTG
1 AACAGAAGCT-TGAA-AGCTGAACAGAAAATCATAAGAGCTGAACAGAAACTCGTAAGAGTTA
7739501 AACAGAA
1 AACAGAA
7739508 AGTAAAACAC
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
61 10 0.17
62 3 0.05
63 47 0.78
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.18
Consensus pattern (61 bp):
AACAGAAGCTTGAAAGCTGAACAGAAAATCATAAGAGCTGAACAGAAACTCGTAAGAGTTA
Found at i:7741188 original size:18 final size:19
Alignment explanation
Indices: 7741157--7741197 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
7741147 AGGCTAACCA
7741157 TGACTGTTTCTAGCTACTT
1 TGACTGTTTCTAGCTACTT
*
7741176 TGAC-GTTTTTAGCTACTT
1 TGACTGTTTCTAGCTACTT
7741194 TGAC
1 TGAC
7741198 ACGCTAGACA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (19 bp):
TGACTGTTTCTAGCTACTT
Found at i:7745782 original size:34 final size:31
Alignment explanation
Indices: 7745744--7745818 Score: 96
Period size: 34 Copynumber: 2.3 Consensus size: 31
7745734 TTTTACTGTC
*
7745744 ACTGTAATGGGCTAAGGCCCACACTGATACTGA
1 ACTGTAATGGGCTAAAGCCCA-ACTGA-ACTGA
*
7745777 TACTGTAATAGGCTAAAGCCCAACTGAACTGA
1 -ACTGTAATGGGCTAAAGCCCAACTGAACTGA
7745809 ACTGTTAATG
1 ACTG-TAATG
7745819 AATTGGGCTT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
31 4 0.11
32 9 0.24
33 5 0.14
34 19 0.51
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.24
Consensus pattern (31 bp):
ACTGTAATGGGCTAAAGCCCAACTGAACTGA
Found at i:7748069 original size:9 final size:9
Alignment explanation
Indices: 7748034--7748255 Score: 64
Period size: 9 Copynumber: 25.6 Consensus size: 9
7748024 ATCCAAAGTT
7748034 TTATGTAAG
1 TTATGTAAG
*
7748043 TTATGATATGAT
1 TTATG-TA--AG
7748055 TTATGTAAG
1 TTATGTAAG
7748064 TTATGTAAG
1 TTATGTAAG
*
7748073 TTATGATATG
1 TTATG-TAAG
* * **
7748083 ATATAT-TT
1 TTATGTAAG
7748091 TTATGT-A-
1 TTATGTAAG
*
7748098 TTACGTAAG
1 TTATGTAAG
*
7748107 TTATGATATG
1 TTATG-TAAG
* * *
7748117 ATATCT-AT
1 TTATGTAAG
7748125 TTATGTAAG
1 TTATGTAAG
*
7748134 TTATGTAAT
1 TTATGTAAG
7748143 TTATG--A-
1 TTATGTAAG
*
7748149 -TATGTATAT
1 TTATGTA-AG
7748158 TTATGT-A-
1 TTATGTAAG
7748165 TTATGTAAG
1 TTATGTAAG
*
7748174 TTATGATATG
1 TTATG-TAAG
* * *
7748184 ATATAT-AT
1 TTATGTAAG
7748192 TTATGTAAG
1 TTATGTAAG
*
7748201 TTATGTAAT
1 TTATGTAAG
7748210 TTATG---G
1 TTATGTAAG
*
7748216 -TATGATATAT
1 TTATG-TA-AG
7748226 TTATGT-A-
1 TTATGTAAG
7748233 TTATGTAAG
1 TTATGTAAG
*
7748242 TTACGTAAG
1 TTATGTAAG
7748251 TTATG
1 TTATG
7748256 ATCCACAGTT
Statistics
Matches: 155, Mismatches: 33, Indels: 50
0.65 0.14 0.21
Matches are distributed among these distances:
5 8 0.05
7 18 0.12
8 19 0.12
9 72 0.46
10 26 0.17
11 6 0.04
12 6 0.04
ACGTcount: A:0.33, C:0.01, G:0.17, T:0.49
Consensus pattern (9 bp):
TTATGTAAG
Found at i:7748097 original size:36 final size:36
Alignment explanation
Indices: 7748044--7748257 Score: 255
Period size: 36 Copynumber: 6.0 Consensus size: 36
7748034 TTATGTAAGT
*
7748044 TATGATAT-GATTTATGTAAGTTATGTAAGTTATGA
1 TATGATATATATTTATGTAAGTTATGTAAGTTATGA
* *
7748079 TATGATATATTTTTATGT-A-TTACGTAAGTTATGA
1 TATGATATATATTTATGTAAGTTATGTAAGTTATGA
* *
7748113 TATGATATCTATTTATGTAAGTTATGTAATTTATGA
1 TATGATATATATTTATGTAAGTTATGTAAGTTATGA
7748149 TATG---TATATTTATGT-A-TTATGTAAGTTATGA
1 TATGATATATATTTATGTAAGTTATGTAAGTTATGA
* *
7748180 TATGATATATATTTATGTAAGTTATGTAATTTATGG
1 TATGATATATATTTATGTAAGTTATGTAAGTTATGA
*
7748216 TATGATATATTTATGTATTATGTAAGTTACGTAAGTTATGA
1 TATGATATA--TA--T-TTATGTAAGTTATGTAAGTTATGA
7748257 T
1 T
7748258 CCACAGTTTT
Statistics
Matches: 152, Mismatches: 14, Indels: 20
0.82 0.08 0.11
Matches are distributed among these distances:
31 18 0.12
32 1 0.01
33 10 0.07
34 41 0.27
35 11 0.07
36 46 0.30
38 2 0.01
40 1 0.01
41 22 0.14
ACGTcount: A:0.33, C:0.01, G:0.16, T:0.49
Consensus pattern (36 bp):
TATGATATATATTTATGTAAGTTATGTAAGTTATGA
Found at i:7748151 original size:31 final size:29
Alignment explanation
Indices: 7748034--7748240 Score: 128
Period size: 34 Copynumber: 6.3 Consensus size: 29
7748024 ATCCAAAGTT
* *
7748034 TTATGTAAGTTATGATAT-GATTTATGTAA
1 TTATGTAATTTATGATATATATTTATGT-A
*
7748063 GTTATGTAAGTTATGATATGATATATTTTTATGTA
1 -TTATGTAA--T-T--TATGATATATATTTATGTA
* *
7748098 TTACGTAAGTTATGATATGATATCTATTTATGTAA
1 TTATGTAA--T-T--TATGATATATATTTATGT-A
7748133 GTTATGTAATTTATGATATGTATATTTATGTA
1 -TTATGTAATTTATGATA--TATATTTATGTA
7748165 TTATGTAAGTTATGATATGATATATATTTATGTAA
1 TTATGTAA--T-T--TATGATATATATTTATGT-A
7748200 GTTATGTAATTTATGGTATGATATATTTATGTA
1 -TTATGTAATTTAT-G-AT-ATATATTTATGTA
7748233 TTATGTAA
1 TTATGTAA
7748241 GTTACGTAAG
Statistics
Matches: 149, Mismatches: 8, Indels: 38
0.76 0.04 0.19
Matches are distributed among these distances:
30 8 0.05
31 18 0.12
32 10 0.07
33 17 0.11
34 56 0.38
35 11 0.07
36 29 0.19
ACGTcount: A:0.33, C:0.01, G:0.16, T:0.50
Consensus pattern (29 bp):
TTATGTAATTTATGATATATATTTATGTA
Found at i:7748154 original size:14 final size:14
Alignment explanation
Indices: 7748135--7748183 Score: 62
Period size: 14 Copynumber: 3.3 Consensus size: 14
7748125 TTATGTAAGT
7748135 TATGTAATTTATGA
1 TATGTAATTTATGA
7748149 TATGTATATTTATGTA
1 TATGTA-ATTTATG-A
*
7748165 TTATGTAAGTTATGA
1 -TATGTAATTTATGA
7748180 TATG
1 TATG
7748184 ATATATATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
14 10 0.32
15 8 0.26
16 7 0.23
17 6 0.19
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.51
Consensus pattern (14 bp):
TATGTAATTTATGA
Found at i:7748186 original size:67 final size:67
Alignment explanation
Indices: 7748044--7748244 Score: 323
Period size: 67 Copynumber: 3.0 Consensus size: 67
7748034 TTATGTAAGT
* * *
7748044 TATGATATGATTTATGTAAGTTATGTAAGTTATGATATGATATATTTTTATGTATTACGTAAGTT
1 TATGATATTATTTATGTAAGTTATGTAATTTATGATATGATATA--TTTATGTATTATGTAAGTT
7748109 ATGA
64 ATGA
7748113 TATGATATCTATTTATGTAAGTTATGTAATTTATGATATG-TATATTTATGTATTATGTAAGTTA
1 TATGATAT-TATTTATGTAAGTTATGTAATTTATGATATGATATATTTATGTATTATGTAAGTTA
7748177 TGA
65 TGA
*
7748180 TATGATATATATTTATGTAAGTTATGTAATTTATGGTATGATATATTTATGTATTATGTAAGTTA
1 TATGATAT-TATTTATGTAAGTTATGTAATTTATGATATGATATATTTATGTATTATGTAAGTTA
7748245 CGTAAGTTAT
Statistics
Matches: 125, Mismatches: 5, Indels: 5
0.93 0.04 0.04
Matches are distributed among these distances:
67 60 0.48
68 24 0.19
69 12 0.10
70 29 0.23
ACGTcount: A:0.33, C:0.01, G:0.16, T:0.50
Consensus pattern (67 bp):
TATGATATTATTTATGTAAGTTATGTAATTTATGATATGATATATTTATGTATTATGTAAGTTAT
GA
Found at i:7748199 original size:27 final size:30
Alignment explanation
Indices: 7748034--7748205 Score: 138
Period size: 34 Copynumber: 5.5 Consensus size: 30
7748024 ATCCAAAGTT
*
7748034 TTATGTAAGTTATGATATG-AT-TTATGTAA
1 TTATGTAAGTTATGATATGTATATTATAT-A
*
7748063 GTTATGTAAGTTATGATATGATATATTTTTATGTA
1 -TTATGTAAGTTATGATATG-TATA---TTATATA
* *
7748098 TTACGTAAGTTATGATATGATATCTATTTATGTAA
1 TTATGTAAGTTATGATATG-TA--TA-TTATAT-A
* *
7748133 GTTATGTAATTTATGATATGTATATTTATGTA
1 -TTATGTAAGTTATGATATGTATA-TTATATA
7748165 TTATGTAAGTTATGATATG-ATA-TATAT-
1 TTATGTAAGTTATGATATGTATATTATATA
7748192 TTATGTAAGTTATG
1 TTATGTAAGTTATG
7748206 TAATTTATGG
Statistics
Matches: 127, Mismatches: 5, Indels: 23
0.82 0.03 0.15
Matches are distributed among these distances:
27 14 0.11
28 4 0.03
30 22 0.17
31 18 0.14
32 3 0.02
33 9 0.07
34 28 0.22
35 4 0.03
36 25 0.20
ACGTcount: A:0.33, C:0.01, G:0.16, T:0.49
Consensus pattern (30 bp):
TTATGTAAGTTATGATATGTATATTATATA
Found at i:7748222 original size:41 final size:41
Alignment explanation
Indices: 7748175--7748255 Score: 110
Period size: 41 Copynumber: 2.0 Consensus size: 41
7748165 TTATGTAAGT
* *
7748175 TATGATATGATATATAT-TTATGTAAGTTATGTAATTTATGG
1 TATGATAT-ATATATATATTATGTAAGTTACGTAAGTTATGG
* *
7748216 TATGATATATTTATGTATTATGTAAGTTACGTAAGTTATG
1 TATGATATATATATATATTATGTAAGTTACGTAAGTTATG
7748256 ATCCACAGTT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 6 0.17
41 29 0.83
ACGTcount: A:0.33, C:0.01, G:0.17, T:0.48
Consensus pattern (41 bp):
TATGATATATATATATATTATGTAAGTTACGTAAGTTATGG
Found at i:7748292 original size:94 final size:97
Alignment explanation
Indices: 7748191--7748371 Score: 287
Period size: 98 Copynumber: 1.9 Consensus size: 97
7748181 ATGATATATA
* * *
7748191 TTTATGTAAGTTATGTAATTTATGGTATG-ATATATTTATGT-A-TTATGTAAGTTACGTAAGTT
1 TTTATGTAAGTTATGTAAGTTATGATATGAATATATTTATGTAAGTTATGTAAATTACGTAAGTT
*
7748253 ATGATCCACAGTTTTTTTTTATTCTTTAAATG
66 ATGATCCAAAGTTTTTTTTTATTCTTTAAATG
*
7748285 TTTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAAATTATGTAAGT
1 TTTATGTAAGTTATGTAAGTTATGATATGA-ATATATTTATGTAAGTTATGTAAATTACGTAAGT
7748350 TATGATCCAAAGTTTTTTTTTA
65 TATGATCCAAAGTTTTTTTTTA
7748372 AATGTTTATG
Statistics
Matches: 78, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
94 27 0.35
96 12 0.15
97 1 0.01
98 38 0.49
ACGTcount: A:0.31, C:0.04, G:0.15, T:0.50
Consensus pattern (97 bp):
TTTATGTAAGTTATGTAAGTTATGATATGAATATATTTATGTAAGTTATGTAAATTACGTAAGTT
ATGATCCAAAGTTTTTTTTTATTCTTTAAATG
Found at i:7748300 original size:9 final size:9
Alignment explanation
Indices: 7748286--7748353 Score: 75
Period size: 9 Copynumber: 7.6 Consensus size: 9
7748276 CTTTAAATGT
7748286 TTATGTAAG
1 TTATGTAAG
7748295 TTATGTAAG
1 TTATGTAAG
*
7748304 TTATGATATG
1 TTATG-TAAG
* * *
7748314 ATATAT-AT
1 TTATGTAAG
7748322 TTATGTAAG
1 TTATGTAAG
*
7748331 TTATGTAAA
1 TTATGTAAG
7748340 TTATGTAAG
1 TTATGTAAG
7748349 TTATG
1 TTATG
7748354 ATCCAAAGTT
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
8 4 0.09
9 37 0.79
10 6 0.13
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:7749200 original size:13 final size:13
Alignment explanation
Indices: 7749182--7749227 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
7749172 GATTTGTTAT
7749182 TTCTTTTGTTTAC
1 TTCTTTTGTTTAC
** * *
7749195 TTCTTTTCATAAT
1 TTCTTTTGTTTAC
7749208 TTCTTTTGTTTAC
1 TTCTTTTGTTTAC
7749221 TTCTTTT
1 TTCTTTT
7749228 CATTTTGTTT
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.11, C:0.15, G:0.04, T:0.70
Consensus pattern (13 bp):
TTCTTTTGTTTAC
Found at i:7749216 original size:26 final size:26
Alignment explanation
Indices: 7749180--7749230 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
7749170 AAGATTTGTT
7749180 ATTTCTTTTGTTTACTTCTTTTCATA
1 ATTTCTTTTGTTTACTTCTTTTCATA
7749206 ATTTCTTTTGTTTACTTCTTTTCAT
1 ATTTCTTTTGTTTACTTCTTTTCAT
7749231 TTTGTTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.14, C:0.16, G:0.04, T:0.67
Consensus pattern (26 bp):
ATTTCTTTTGTTTACTTCTTTTCATA
Found at i:7749425 original size:72 final size:71
Alignment explanation
Indices: 7749280--7749653 Score: 293
Period size: 72 Copynumber: 5.2 Consensus size: 71
7749270 AATATTACCG
** * * * * * * * *
7749280 AATAAACTATTTTACTTAATATCAAAACTCAATAAATCAAATTAATTTAATCTTCTCAAAACATA
1 AATAAACGGTTTTACTTAATATCAAAACTCAATAAATCGAACTAAATTAACCTTTTAAAAATACA
*
7749345 TAACTTG
66 TAA-TTA
* * *
7749352 AATAAACGGTTTTACTTAATATCGAAACTCAATGAATCGAACTAAAATAGA-CTTTTAAAAAATA
1 AATAAACGGTTTTACTTAATATCAAAACTCAATAAATCGAACTAAATTA-ACCTTTT-AAAAATA
*
7749416 CATAATTG
64 CATAATTA
* * ** * * *** * *
7749424 AATAAATGGTTCTACTTAATATCGGAATTCAATAAATTGAACTAAATT-TTTTTTTTAAAATGCA
1 AATAAACGGTTTTACTTAATATCAAAACTCAATAAATCGAACTAAATTAACCTTTTAAAAATACA
7749488 TAATTA
66 TAATTA
* ** ** ** * * * * **
7749494 AACAAGTGGTTTTACTTTGTATCAAATTTCAATAAATCAAACTAAATTAAGCTTCTGAAAATGTA
1 AATAAACGGTTTTACTTAATATCAAAACTCAATAAATCGAACTAAATTAACCTTTTAAAAATACA
*
7749559 TAACTA
66 TAATTA
* * * *
7749565 AATAAACGGTTTCACTTAATATCAAAACTTAATAAATTGAACTAAATTAACCTTATTAAAAACAC
1 AATAAACGGTTTTACTTAATATCAAAACTCAATAAATCGAACTAAATTAACCTT-TTAAAAATAC
7749630 ATAATTA
65 ATAATTA
*
7749637 AATAAACGATTTTACTT
1 AATAAACGGTTTTACTT
7749654 TATAATTAAT
Statistics
Matches: 236, Mismatches: 61, Indels: 10
0.77 0.20 0.03
Matches are distributed among these distances:
70 50 0.21
71 61 0.26
72 115 0.49
73 10 0.04
ACGTcount: A:0.45, C:0.13, G:0.07, T:0.35
Consensus pattern (71 bp):
AATAAACGGTTTTACTTAATATCAAAACTCAATAAATCGAACTAAATTAACCTTTTAAAAATACA
TAATTA
Found at i:7751165 original size:27 final size:27
Alignment explanation
Indices: 7751127--7751179 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
7751117 TTGAATGTGA
7751127 AAGGGGTTGCTAAGTGCTGATTCCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCCC
7751154 AAGGGGTTGCTAAGTGCTGATTCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCC
7751180 GACTCCGACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (27 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:7751239 original size:109 final size:103
Alignment explanation
Indices: 7751026--7751257 Score: 383
Period size: 109 Copynumber: 2.2 Consensus size: 103
7751016 GAATAAAAAG
*
7751026 GGGGTTGCTAAGTGCTAATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGACTCTTTGGTGGT
1 GGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGACTCTTTGGTGGT
*
7751091 TGCTAAGTGTTGATTCCACCATATCCTTGAATGTGAAA
66 TGCTAAGTGCTGATTCCACCATATCCTTGAATGTGAAA
7751129 GGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGACTCCGACTCTTT
1 GGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATT---C--C-CCGACTCTTT
7751194 GGTGGTTGCTAAGTGCTGATTCCACCATATCCTTGAATGTGAAA
60 GGTGGTTGCTAAGTGCTGATTCCACCATATCCTTGAATGTGAAA
*
7751238 GGGGTTGCTAAGTGTTGATT
1 GGGGTTGCTAAGTGCTGATT
7751258 TCCCGAATCA
Statistics
Matches: 120, Mismatches: 3, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
103 46 0.38
106 1 0.01
108 1 0.01
109 72 0.60
ACGTcount: A:0.19, C:0.21, G:0.28, T:0.32
Consensus pattern (103 bp):
GGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGACTCTTTGGTGGT
TGCTAAGTGCTGATTCCACCATATCCTTGAATGTGAAA
Found at i:7751294 original size:76 final size:77
Alignment explanation
Indices: 7751154--7751372 Score: 323
Period size: 77 Copynumber: 2.8 Consensus size: 77
7751144 TGATTCCCCC
*
7751154 AAGGGGTTGCTAAGTGCTGATTCCCCGACTCCGACTCTTTGGTGGTTGCTAAGTGCTGATTCCAC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAAT-C-A--C--TGGTGGTTGCTAAGTGCTGATTCCAC
*
7751219 CATATCCTTGAATGT-GA
60 CATATCCTTGAATGTAAA
* *
7751236 AAGGGGTTGCTAAGTGTTGATTTCCCGAATCACTGGTGGTTGCTAAGTGCTGATTCCACCATATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGATTCCACCATATC
7751301 CTTGAATGTAAA
66 CTTGAATGTAAA
* *
7751313 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTGGTTGTTAAGTGCTGAATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGATTCCACC
7751373 GATAACGGTT
Statistics
Matches: 128, Mismatches: 8, Indels: 7
0.90 0.06 0.05
Matches are distributed among these distances:
76 41 0.32
77 57 0.45
78 1 0.01
80 1 0.01
81 1 0.01
82 27 0.21
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (77 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGATTCCACCATATC
CTTGAATGTAAA
Found at i:7753497 original size:13 final size:13
Alignment explanation
Indices: 7753479--7753519 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
7753469 TCAATTTTCC
7753479 CTTTTCTTTCTTT
1 CTTTTCTTTCTTT
7753492 CTTTTCTTTCTTT
1 CTTTTCTTTCTTT
*
7753505 CCTTTT-TTTCCTT
1 -CTTTTCTTTCTTT
7753518 CT
1 CT
7753520 CTGTTTCGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 2 0.08
13 19 0.73
14 5 0.19
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (13 bp):
CTTTTCTTTCTTT
Found at i:7755767 original size:39 final size:39
Alignment explanation
Indices: 7755719--7755829 Score: 125
Period size: 41 Copynumber: 2.8 Consensus size: 39
7755709 TCGCAGCGAC
*
7755719 TATGA-AAAACGTTGCTATTGCTTACCTTTTGCAGCATT
1 TATGAGAAAACGTTACTATTGCTTACCTTTTGCAGCATT
* ** * * *
7755757 TGTGAGAAAACGCCACTATAGTTCTAACCTTTTGCGGCATT
1 TATGAGAAAACGTTACTAT--TGCTTACCTTTTGCAGCATT
7755798 TATGAGAAAACGTTACTATTGCTTTACCTTTT
1 TATGAGAAAACGTTACTATTGC-TTACCTTTT
7755830 ACGGCGTTTT
Statistics
Matches: 57, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
38 4 0.07
39 12 0.21
40 8 0.14
41 33 0.58
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (39 bp):
TATGAGAAAACGTTACTATTGCTTACCTTTTGCAGCATT
Found at i:7756816 original size:39 final size:39
Alignment explanation
Indices: 7756773--7756850 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
7756763 TGTGAGGCCG
* *
7756773 TGTGGGTCACACGGGCT-ATGCCAATTTAGGCGTGTGGGC
1 TGTGGGCCACACGGG-TAAGGCCAATTTAGGCGTGTGGGC
*
7756812 TGTGGGCCACACGGGTAAGGCCAATTTGGGCGTGTGGGC
1 TGTGGGCCACACGGGTAAGGCCAATTTAGGCGTGTGGGC
7756851 CTAAATTTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
38 1 0.03
39 34 0.97
ACGTcount: A:0.15, C:0.21, G:0.41, T:0.23
Consensus pattern (39 bp):
TGTGGGCCACACGGGTAAGGCCAATTTAGGCGTGTGGGC
Found at i:7764339 original size:71 final size:71
Alignment explanation
Indices: 7764223--7764358 Score: 238
Period size: 71 Copynumber: 1.9 Consensus size: 71
7764213 TTTGCTAAGT
**
7764223 AAATTTTAAAAGCACCTTCAATTTTTTTTAAAAATTATTTTAATCATTCATTTAACTTTTCATCT
1 AAATTTTAAAAGCACCTTCAATTTTTTAAAAAAATTATTTTAATCATTCATTTAACTTTTCATCT
7764288 GGTTTA
66 GGTTTA
7764294 AAATTTTAAAAGCACCTTCAA-TTTTTAAAAAAATTTATTTTAATCATTCATTTAACTTTTCATC
1 AAATTTTAAAAGCACCTTCAATTTTTTAAAAAAA-TTATTTTAATCATTCATTTAACTTTTCATC
7764358 T
65 T
7764359 TTTTTAGTCT
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
70 10 0.16
71 52 0.84
ACGTcount: A:0.36, C:0.13, G:0.03, T:0.48
Consensus pattern (71 bp):
AAATTTTAAAAGCACCTTCAATTTTTTAAAAAAATTATTTTAATCATTCATTTAACTTTTCATCT
GGTTTA
Found at i:7764535 original size:26 final size:25
Alignment explanation
Indices: 7764496--7764584 Score: 74
Period size: 26 Copynumber: 3.4 Consensus size: 25
7764486 TTTTTTTAAA
*
7764496 TTTAAGAATTTAAAAATATTATAATT
1 TTTAA-AAATTAAAAATATTATAATT
7764522 TTTGAAAAATTAAAAATCATTA-AATT
1 TTT-AAAAATTAAAAAT-ATTATAATT
* * *
7764548 TATTAAATA-TATAAATATTTTAATATT
1 T-TTAAAAATTAAAAATATTAT-A-ATT
7764575 TTTAAAAATT
1 TTTAAAAATT
7764585 TTAAAAATTA
Statistics
Matches: 51, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
24 3 0.06
25 6 0.12
26 29 0.57
27 13 0.25
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.46
Consensus pattern (25 bp):
TTTAAAAATTAAAAATATTATAATT
Found at i:7765661 original size:13 final size:14
Alignment explanation
Indices: 7765626--7765654 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7765616 ATTATTTTAA
7765626 AATGAAAAATATTG
1 AATGAAAAATATTG
7765640 AATGAAAAAT-TTG
1 AATGAAAAATATTG
7765653 AA
1 AA
7765655 GATAAAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.59, C:0.00, G:0.14, T:0.28
Consensus pattern (14 bp):
AATGAAAAATATTG
Found at i:7772523 original size:16 final size:16
Alignment explanation
Indices: 7772502--7772536 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7772492 CAATTTGTAG
7772502 AAAAGAAAAAAAAATA
1 AAAAGAAAAAAAAATA
**
7772518 AAAAGAAAAGTAAATA
1 AAAAGAAAAAAAAATA
7772534 AAA
1 AAA
7772537 TAGATAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.83, C:0.00, G:0.09, T:0.09
Consensus pattern (16 bp):
AAAAGAAAAAAAAATA
Found at i:7773376 original size:40 final size:41
Alignment explanation
Indices: 7773326--7773859 Score: 579
Period size: 40 Copynumber: 12.8 Consensus size: 41
7773316 GGTTTCTTTC
7773326 ATCTGCTCCACTACTGCTTAGGGAGATAAGA-CTTGATGTG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTGATGTG
* ** *
7773366 ATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGGTTTCTTTCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATC---TTGATGT-G
*
7773411 -TCTGCTCCACTACTACTTAGGGAGATAAGA-CTTGATGTG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTGATGTG
** *
7773450 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTTTTTTTCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATC-----TTGATGT-G
* *
7773497 -TCTGCTCCACTACTGCTTAGAGAGATAAGA-CTTGATGCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTGATGTG
** *
7773536 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATC---TTGATGT-G
* *
7773581 -TCTGCTCTACTACTGCTTAGGGAGATAAGA-CTTGATGTA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTGATGTG
* *
7773620 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-T-GATGTG
*
7773663 -TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTTGATGCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTGATGTG
* * *
7773702 ATCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-T-GATGTG
* *
7773745 -TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-T-GATGTG
* *
7773787 -TCTGCTCCACTACTGCTTATGGAGATAAGA-CTTGATGCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTGATGTG
7773826 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
7773860 GTGGTTCTGT
Statistics
Matches: 420, Mismatches: 45, Indels: 57
0.80 0.09 0.11
Matches are distributed among these distances:
39 8 0.02
40 188 0.45
41 13 0.03
42 102 0.24
43 8 0.02
44 64 0.15
45 3 0.01
46 33 0.08
47 1 0.00
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (41 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTGATGTG
Found at i:7773430 original size:84 final size:84
Alignment explanation
Indices: 7773300--7773856 Score: 780
Period size: 84 Copynumber: 6.7 Consensus size: 84
7773290 CATTGCAACT
* *
7773300 TTAGGGAGATAGGAT-TGGTTTCTTTCATCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
1 TTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
*
7773364 TGATCTGCTCCACTATTGC
66 TGATCTGCTCCACTACTGC
*
7773383 TTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTACTTAGGGAGATAAGACTTGATG
1 TTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
7773448 TGATCTGCTCCACTACTGC
66 TGATCTGCTCCACTACTGC
* *
7773467 TTAGGGAGATAAGATCTGGTTTTTTTTTCGTCTGCTCCACTACTGCTTAGAGAGATAAGACTTGA
1 TTAGGGAGATAAGATCTGG--TTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGA
*
7773532 TGCGATCTGCTCCACTACTGC
64 TGTGATCTGCTCCACTACTGC
*
7773553 TTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCTACTACTGCTTAGGGAGATAAGACTTGATG
1 TTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
*
7773618 TAATCTGCTCCACTACTGC
66 TGATCTGCTCCACTACTGC
*
7773637 TTAGGGAGATAAGATCTGTGGTTC--T-GTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGAT
1 TTAGGGAGATAAGATCTG-GTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGAT
* *
7773699 GCGATCTGTTCCACTACTGC
65 GTGATCTGCTCCACTACTGC
*
7773719 TTAGGGAGATAAGATCTGTGGTTC--T-GTCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTG
1 TTAGGGAGATAAGATCTG-GTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-T-
* *
7773781 GTTCTG-TCTGCTCCACTACTGC
62 GATGTGATCTGCTCCACTACTGC
* ** *
7773803 TTATGGAGATAAGA-C----TTGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 TTAGGGAGATAAGATCTGGTTTCTTTCG-TCTGCTCCACTACTGCTTAGGGAGATAAGA
7773857 TCTGTGGTTC
Statistics
Matches: 438, Mismatches: 25, Indels: 23
0.90 0.05 0.05
Matches are distributed among these distances:
78 2 0.00
81 1 0.00
82 139 0.32
83 18 0.04
84 191 0.44
85 7 0.02
86 80 0.18
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.33
Consensus pattern (84 bp):
TTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
TGATCTGCTCCACTACTGC
Found at i:7773524 original size:170 final size:168
Alignment explanation
Indices: 7773300--7773856 Score: 787
Period size: 170 Copynumber: 3.3 Consensus size: 168
7773290 CATTGCAACT
* * *
7773300 TTAGGGAGATAGGAT-TGGTTTCTTTCATCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
1 TTAGGGAGATAAGATCTGGTTTTTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
* * *
7773364 TGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTACTT
66 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTT
7773429 AGGGAGATAAGACTTGATGTGATCTGCTCCACTACTGC
131 AGGGAGATAAGACTTGATGTGATCTGCTCCACTACTGC
*
7773467 TTAGGGAGATAAGATCTGGTTTTTTTTTCGTCTGCTCCACTACTGCTTAGAGAGATAAGACTTGA
1 TTAGGGAGATAAGATCTGG--TTTTTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGA
*
7773532 TGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCTACTACTGC
64 TGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGC
*
7773597 TTAGGGAGATAAGACTTGATGTAATCTGCTCCACTACTGC
129 TTAGGGAGATAAGACTTGATGTGATCTGCTCCACTACTGC
** *
7773637 TTAGGGAGATAAGATCT-GTGGTTCT-GTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
1 TTAGGGAGATAAGATCTGGTTTTTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
* *
7773700 CGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTC--T-GTCTGCTCCACTACTGCT
66 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG-GTTTCTTTCGTCTGCTCCACTACTGCT
* *
7773762 TAGGGAGATAAGATCTGTGGTTCTG-TCTGCTCCACTACTGC
130 TAGGGAGATAAGA-CT-T-GATGTGATCTGCTCCACTACTGC
* ** *
7773803 TTATGGAGATAAGA-C----TTGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 TTAGGGAGATAAGATCTGGTTTTTTTCG-TCTGCTCCACTACTGCTTAGGGAGATAAGA
7773857 TCTGTGGTTC
Statistics
Matches: 355, Mismatches: 26, Indels: 21
0.88 0.06 0.05
Matches are distributed among these distances:
163 1 0.00
164 60 0.17
165 4 0.01
166 103 0.29
167 25 0.07
168 3 0.01
169 1 0.00
170 158 0.45
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.33
Consensus pattern (168 bp):
TTAGGGAGATAAGATCTGGTTTTTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTT
AGGGAGATAAGACTTGATGTGATCTGCTCCACTACTGC
Found at i:7773860 original size:124 final size:124
Alignment explanation
Indices: 7773326--7773869 Score: 687
Period size: 124 Copynumber: 4.4 Consensus size: 124
7773316 GGTTTCTTTC
* * *
7773326 ATCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-T-GATGTGATCTGCTCCACTATTGCTTAGG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTG-TCTGCTCCACTACTGCTTAGG
* * *
7773388 GAGATAAGATCTG-GTTTCTTTCGTCTGCTCCACTACTACTTAGGGAGATAAGACTTGATGTG
65 GAGATAAGATCTGTGGTTC--T-GTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCG
** *
7773450 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTTTTTTTCGTCTGCTCCACTACTGCTT
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-G--TGGTTCT-GTCTGCTCCACTACTGCTT
* * * **
7773515 AGAGAGATAAGA-CT-TGATGC-GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCT
62 AGGGAGATAAGATCTGTGGTTCTG-TCTGCTCCACTACTGCTTAGGGAGATAAGA-C----TTGA
*
7773577 TTCG
121 TGCG
* * **
7773581 -TCTGCTCTACTACTGCTTAGGGAGATAAGA-CT-TGATGT-AATCTGCTCCACTACTGCTTAGG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGT-TCTGTCTGCTCCACTACTGCTTAGG
7773642 GAGATAAGATCTGTGGTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCG
65 GAGATAAGATCTGTGGTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCG
*
7773702 ATCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTGTCTGCTCCACTACTGCTTAGGG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTGTCTGCTCCACTACTGCTTAGGG
*
7773767 AGATAAGATCTGTGGTTCTGTCTGCTCCACTACTGCTTATGGAGATAAGACTTGATGCG
66 AGATAAGATCTGTGGTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCG
7773826 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTGT
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTGT
7773870 TCTCTGGGGA
Statistics
Matches: 368, Mismatches: 30, Indels: 44
0.83 0.07 0.10
Matches are distributed among these distances:
121 5 0.01
122 28 0.08
123 3 0.01
124 186 0.51
125 8 0.02
126 64 0.17
127 2 0.01
129 8 0.02
130 59 0.16
131 5 0.01
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (124 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTGTCTGCTCCACTACTGCTTAGGG
AGATAAGATCTGTGGTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCG
Found at i:7790517 original size:33 final size:34
Alignment explanation
Indices: 7790438--7790517 Score: 87
Period size: 33 Copynumber: 2.4 Consensus size: 34
7790428 TAAAACTAAC
7790438 GATACATAAAATATTTTAAAAACTTTAAATATAAT
1 GATACATAAAATA-TTTAAAAACTTTAAATATAAT
* * *
7790473 -A-ACA-AATAATATTTAAATAGTTT-TATATAAT
1 GATACATAA-AATATTTAAAAACTTTAAATATAAT
7790504 GATACATAAAATAT
1 GATACATAAAATAT
7790518 AAACTAATCT
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
31 7 0.18
32 13 0.34
33 15 0.39
34 3 0.08
ACGTcount: A:0.54, C:0.05, G:0.04, T:0.38
Consensus pattern (34 bp):
GATACATAAAATATTTAAAAACTTTAAATATAAT
Found at i:7797286 original size:29 final size:28
Alignment explanation
Indices: 7797235--7797309 Score: 91
Period size: 28 Copynumber: 2.6 Consensus size: 28
7797225 GCTTATAATT
* *
7797235 TTTTTATATATTTCTAT-ATATTTTACAA
1 TTTTTATA-ATTTTTATAAAATTTTACAA
7797263 TTTTT-TAAGATTTTTATAAAATTTTACAA
1 TTTTTAT-A-ATTTTTATAAAATTTTACAA
7797292 TTTTTATAATTTTTATAA
1 TTTTTATAATTTTTATAA
7797310 TTTTTTTCTA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
27 1 0.02
28 23 0.56
29 16 0.39
30 1 0.02
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.60
Consensus pattern (28 bp):
TTTTTATAATTTTTATAAAATTTTACAA
Found at i:7797316 original size:29 final size:30
Alignment explanation
Indices: 7797255--7797353 Score: 82
Period size: 29 Copynumber: 3.4 Consensus size: 30
7797245 TTTCTATATA
**
7797255 TTTTACAATTTTT-TAAGATTTTTATAA-AA
1 TTTTACAATTTTTAT-AGATTTTTATAATTT
7797284 TTTTACAATTTTTATA-ATTTTTATAATTT
1 TTTTACAATTTTTATAGATTTTTATAATTT
* * *
7797313 TTTT-CTAA-TTTTAAATATTTTTATATTTT
1 TTTTAC-AATTTTTATAGATTTTTATAATTT
*
7797342 TTATTAAAATTT
1 TT-TTACAATTT
7797354 AATAATTTTT
Statistics
Matches: 58, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
28 17 0.29
29 34 0.59
30 5 0.09
31 2 0.03
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (30 bp):
TTTTACAATTTTTATAGATTTTTATAATTT
Found at i:7797324 original size:9 final size:9
Alignment explanation
Indices: 7797235--7797382 Score: 68
Period size: 9 Copynumber: 15.6 Consensus size: 9
7797225 GCTTATAATT
7797235 TTTTTATATA
1 TTTTTATA-A
*
7797245 TTTCTAT-A
1 TTTTTATAA
*
7797253 TATTTTACAA
1 T-TTTTATAA
7797263 TTTTT-TAAGA
1 TTTTTAT-A-A
7797273 TTTTTATAAA
1 TTTTTAT-AA
* *
7797283 ATTTTACAA
1 TTTTTATAA
7797292 TTTTTATAA
1 TTTTTATAA
7797301 TTTTTATAA
1 TTTTTATAA
*
7797310 TTTTTTTCTAA
1 --TTTTTATAA
*
7797321 -TTTTAAATA
1 TTTTTATA-A
*
7797330 TTTTTATAT
1 TTTTTATAA
7797339 TTTTTATTAAA
1 TTTTTA-T-AA
* *
7797350 ATTTAATAA
1 TTTTTATAA
* *
7797359 TTTTTTTTAT
1 -TTTTTATAA
*
7797369 TTTTTATCA
1 TTTTTATAA
7797378 TTTTT
1 TTTTT
7797383 TGTTATATGT
Statistics
Matches: 103, Mismatches: 23, Indels: 25
0.68 0.15 0.17
Matches are distributed among these distances:
8 7 0.07
9 47 0.46
10 33 0.32
11 16 0.16
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (9 bp):
TTTTTATAA
Found at i:7797342 original size:18 final size:19
Alignment explanation
Indices: 7797227--7797342 Score: 64
Period size: 19 Copynumber: 6.1 Consensus size: 19
7797217 GTATAAAAGC
*
7797227 TTATAATTTTTTTATATATT
1 TTATAATATTTTTATAT-TT
*
7797247 TCTAT-ATA-TTTTACAATTT
1 T-TATAATATTTTTA-TATTT
* *
7797266 TT-TAAGATTTTTATAAAATT
1 TTATAATATTTTTAT--ATTT
*
7797286 TTA-CA-ATTTTTATAATTT
1 TTATAATATTTTTAT-ATTT
* * *
7797304 TTATAATTTTTTTCTAATT
1 TTATAATATTTTTATATTT
7797323 TTA-AATATTTTTATATTT
1 TTATAATATTTTTATATTT
7797341 TT
1 TT
7797343 TATTAAAATT
Statistics
Matches: 73, Mismatches: 14, Indels: 20
0.68 0.13 0.19
Matches are distributed among these distances:
17 1 0.01
18 24 0.33
19 28 0.38
20 17 0.23
21 3 0.04
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (19 bp):
TTATAATATTTTTATATTT
Found at i:7797354 original size:29 final size:29
Alignment explanation
Indices: 7797297--7797376 Score: 85
Period size: 29 Copynumber: 2.7 Consensus size: 29
7797287 TACAATTTTT
*
7797297 ATAATTTTTATAATTTTTT-TCTAATTTTA
1 ATAATTTTTAT-ATTTTTTATCTAAATTTA
7797326 A-ATATTTTTATATTTTTTAT-TAAAATTTA
1 ATA-ATTTTTATATTTTTTATCT-AAATTTA
*
7797355 ATAATTTTTTTTATTTTTTATC
1 ATAA-TTTTTATATTTTTTATC
7797377 ATTTTTTGTT
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
28 9 0.21
29 18 0.42
30 16 0.37
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (29 bp):
ATAATTTTTATATTTTTTATCTAAATTTA
Found at i:7797364 original size:30 final size:30
Alignment explanation
Indices: 7797297--7797375 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 30
7797287 TACAATTTTT
* ** *
7797297 ATAA-TTTTTATAATTTTT-TTCTAATTTT
1 ATAATTTTTTATATTTTTTATTAAAATTTA
7797325 A-AATATTTTTATATTTTTTATTAAAATTTA
1 ATAAT-TTTTTATATTTTTTATTAAAATTTA
*
7797355 ATAATTTTTTTTATTTTTTAT
1 ATAATTTTTTATATTTTTTAT
7797376 CATTTTTTGT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
27 2 0.05
28 1 0.02
29 13 0.31
30 23 0.55
31 3 0.07
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.67
Consensus pattern (30 bp):
ATAATTTTTTATATTTTTTATTAAAATTTA
Found at i:7802328 original size:71 final size:71
Alignment explanation
Indices: 7802151--7802328 Score: 171
Period size: 71 Copynumber: 2.5 Consensus size: 71
7802141 ACGCATTTAA
* * * * * * * * *
7802151 TATCGTCGATTTATCTGACTAGCACTAGGCGA-AAACCAATGTCGATTCGTTTGACTAGTGTTGG
1 TATCGTTGGTTTATCCGACTAGCACTGGGC-ACAAACCAATATCGATTCGATCGACTAGTGCTAG
7802215 GCACATC
65 GCACATC
* * ** ** * *
7802222 TATCATCTGG-TTATCCGACTAACGGTGGGTGCAAACCACTATCGATTTGATCGACTAGTGCTAG
1 TATCGT-TGGTTTATCCGACTAGCACTGGGCACAAACCAATATCGATTCGATCGACTAGTGCTAG
7802286 GCACATC
65 GCACATC
7802293 TATCGTTGGTTTATCCGACTAGCACTGGGCACAAAC
1 TATCGTTGGTTTATCCGACTAGCACTGGGCACAAAC
7802329 TTATTACAAG
Statistics
Matches: 81, Mismatches: 23, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
70 3 0.04
71 77 0.95
72 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.29
Consensus pattern (71 bp):
TATCGTTGGTTTATCCGACTAGCACTGGGCACAAACCAATATCGATTCGATCGACTAGTGCTAGG
CACATC
Found at i:7804867 original size:58 final size:57
Alignment explanation
Indices: 7804737--7804915 Score: 234
Period size: 58 Copynumber: 3.1 Consensus size: 57
7804727 TTCTTTTTCT
* * * * * * *
7804737 TTTTCTTTTTCATTTTGAAGAAAATCACATTTATTTCCAAATGATTT-CATTTCTCTA
1 TTTTCATTTTCATTTTGGAGAAAAACATAATCATTTCCAAATG-TTTCCATTTCTCCA
*
7804794 TTTTCATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGTTTACCATTTCTCCA
1 TTTTCATTTTCATTTTGGAGAAAAACATAATCATTTCCAAATGTTT-CCATTTCTCCA
* *
7804852 TTTTCATTTTCATTTTGGAGAAAAACATAATCATTTCCAAATTTTTCTCATTTCTCCG
1 TTTTCATTTTCATTTTGGAGAAAAACATAATCATTTCCAAATGTTTC-CATTTCTCCA
7804910 TTTTCA
1 TTTTCA
7804916 CAATTCCTAT
Statistics
Matches: 109, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
56 3 0.03
57 38 0.35
58 68 0.62
ACGTcount: A:0.28, C:0.18, G:0.06, T:0.47
Consensus pattern (57 bp):
TTTTCATTTTCATTTTGGAGAAAAACATAATCATTTCCAAATGTTTCCATTTCTCCA
Found at i:7806874 original size:24 final size:24
Alignment explanation
Indices: 7806834--7806880 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
7806824 AAAGGGAAAT
*
7806834 AAGAGAAAGTGATGGAAAATGTTG
1 AAGAGAAAGTGAAGGAAAATGTTG
*
7806858 AAGAGAAAG-GAAAGGAAAGTGTT
1 AAGAGAAAGTG-AAGGAAAATGTT
7806881 ATAAATTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.49, C:0.00, G:0.34, T:0.17
Consensus pattern (24 bp):
AAGAGAAAGTGAAGGAAAATGTTG
Found at i:7812435 original size:14 final size:14
Alignment explanation
Indices: 7812416--7812448 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
7812406 TCTGAAATAA
7812416 TTTCTTCAGAGAAT
1 TTTCTTCAGAGAAT
7812430 TTTCTTCAGAGAAT
1 TTTCTTCAGAGAAT
7812444 TTTCT
1 TTTCT
7812449 CTCTACAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.48
Consensus pattern (14 bp):
TTTCTTCAGAGAAT
Found at i:7823186 original size:18 final size:19
Alignment explanation
Indices: 7823150--7823187 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
7823140 AAATATAATT
*
7823150 TTAATTTTAATTAATTTGA
1 TTAATTTTAATTAACTTGA
*
7823169 TTAA-TTTAATTTACTTGA
1 TTAATTTTAATTAACTTGA
7823187 T
1 T
7823188 CAAAATTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (19 bp):
TTAATTTTAATTAACTTGA
Found at i:7825095 original size:17 final size:17
Alignment explanation
Indices: 7825065--7825109 Score: 65
Period size: 16 Copynumber: 2.7 Consensus size: 17
7825055 CCGATATAAT
* *
7825065 AAATATATTTATTTTTA
1 AAATATTTTTAATTTTA
7825082 AAAT-TTTTTAATTTTA
1 AAATATTTTTAATTTTA
7825098 AAATATTTTTAA
1 AAATATTTTTAA
7825110 AATACTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
AAATATTTTTAATTTTA
Found at i:7825107 original size:11 final size:11
Alignment explanation
Indices: 7825093--7825159 Score: 54
Period size: 11 Copynumber: 6.4 Consensus size: 11
7825083 AATTTTTTAA
7825093 TTTTAAAATAT
1 TTTTAAAATAT
7825104 TTTTAAAATACT
1 TTTTAAAATA-T
* *
7825116 TTTT-TATTAT
1 TTTTAAAATAT
*
7825126 TTTT----TAA
1 TTTTAAAATAT
7825133 TTTTAAAATAT
1 TTTTAAAATAT
7825144 TTTTAAAATACT
1 TTTTAAAATA-T
7825156 TTTT
1 TTTT
7825160 TAATTTTTAA
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
7 6 0.13
10 5 0.11
11 25 0.54
12 10 0.22
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:7825120 original size:40 final size:40
Alignment explanation
Indices: 7825076--7825162 Score: 156
Period size: 40 Copynumber: 2.2 Consensus size: 40
7825066 AATATATTTA
7825076 TTTTTAAAATTTTTTAATTTTAAAATATTTTTAAAATACT
1 TTTTTAAAATTTTTTAATTTTAAAATATTTTTAAAATACT
**
7825116 TTTTTATTATTTTTTAATTTTAAAATATTTTTAAAATACT
1 TTTTTAAAATTTTTTAATTTTAAAATATTTTTAAAATACT
7825156 TTTTTAA
1 TTTTTAA
7825163 TTTTTAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (40 bp):
TTTTTAAAATTTTTTAATTTTAAAATATTTTTAAAATACT
Found at i:7825136 original size:30 final size:31
Alignment explanation
Indices: 7825102--7825173 Score: 96
Period size: 29 Copynumber: 2.4 Consensus size: 31
7825092 ATTTTAAAAT
* *
7825102 ATTTTTAAAATACTTTTT-TATTA-TTTTTTA
1 ATTTTTAAAATA-TTTTTAAAATACTTTTTTA
7825132 A-TTTTAAAATATTTTTAAAATACTTTTTTA
1 ATTTTTAAAATATTTTTAAAATACTTTTTTA
7825162 ATTTTTAAAATA
1 ATTTTTAAAATA
7825174 AATTTTTGGT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
28 5 0.14
29 13 0.35
30 9 0.24
31 10 0.27
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (31 bp):
ATTTTTAAAATATTTTTAAAATACTTTTTTA
Found at i:7825179 original size:20 final size:20
Alignment explanation
Indices: 7825142--7825180 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7825132 ATTTTAAAAT
**
7825142 ATTTTTAAAATACTTTTTTA
1 ATTTTTAAAATAAATTTTTA
7825162 ATTTTTAAAATAAATTTTT
1 ATTTTTAAAATAAATTTTT
7825181 GGTATTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (20 bp):
ATTTTTAAAATAAATTTTTA
Found at i:7831190 original size:23 final size:20
Alignment explanation
Indices: 7831160--7831204 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
7831150 ATTTTTTTTT
7831160 TAAAAGTTCAACAAAGAATAAA
1 TAAAAGTTC-ACAAA-AATAAA
*
7831182 TAAATAGTTCACCAAAATAAA
1 TAAA-AGTTCACAAAAATAAA
7831203 TA
1 TA
7831205 GAATGAGGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 8 0.38
22 8 0.38
23 5 0.24
ACGTcount: A:0.60, C:0.11, G:0.07, T:0.22
Consensus pattern (20 bp):
TAAAAGTTCACAAAAATAAA
Found at i:7837685 original size:22 final size:22
Alignment explanation
Indices: 7837659--7837702 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
7837649 AAATCCTCTG
7837659 TATCATGATGACACCTTTGACA
1 TATCATGATGACACCTTTGACA
7837681 TATCATGATGACACCTTTGACA
1 TATCATGATGACACCTTTGACA
7837703 GGACGCACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.32
Consensus pattern (22 bp):
TATCATGATGACACCTTTGACA
Found at i:7839056 original size:25 final size:27
Alignment explanation
Indices: 7839022--7839083 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
7839012 TATATTATAT
*
7839022 TATAATTATCAC-AA-CT-TTTTTTTAA
1 TATAATTATC-CTAATCTATTTTTTCAA
*
7839047 TATAACTATCCTAATCTATTTTTTCAA
1 TATAATTATCCTAATCTATTTTTTCAA
7839074 TATAATTATC
1 TATAATTATC
7839084 TCCATCTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
24 1 0.03
25 11 0.35
26 2 0.06
27 17 0.55
ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50
Consensus pattern (27 bp):
TATAATTATCCTAATCTATTTTTTCAA
Found at i:7839090 original size:27 final size:26
Alignment explanation
Indices: 7839022--7839093 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 26
7839012 TATATTATAT
* * *
7839022 TATAATTATCACAACT-TTTTTTTAA
1 TATAATTATCCCATCTATTTTTTCAA
* *
7839047 TATAACTATCCTAATCTATTTTTTCAA
1 TATAATTATCC-CATCTATTTTTTCAA
7839074 TATAATTATCTCCATCTATT
1 TATAATTATC-CCATCTATT
7839094 CCCTAGATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
25 9 0.24
26 3 0.08
27 24 0.65
28 1 0.03
ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50
Consensus pattern (26 bp):
TATAATTATCCCATCTATTTTTTCAA
Found at i:7842722 original size:24 final size:24
Alignment explanation
Indices: 7842695--7842746 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7842685 TTAGTAAGTC
*
7842695 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
7842719 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
7842743 AAAT
1 AAAT
7842747 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:7844692 original size:24 final size:24
Alignment explanation
Indices: 7844665--7844716 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7844655 TTAGTAAGTC
*
7844665 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
7844689 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
7844713 AAAT
1 AAAT
7844717 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:7845157 original size:16 final size:16
Alignment explanation
Indices: 7845118--7845172 Score: 53
Period size: 16 Copynumber: 3.5 Consensus size: 16
7845108 TATTAGAGGG
*
7845118 TGAAGAAATGAAATAA
1 TGAATAAATGAAATAA
7845134 TGACATAAAT-AAATAGA
1 TGA-ATAAATGAAATA-A
7845151 TGAATAAA-GAAA-AA
1 TGAATAAATGAAATAA
*
7845165 TAAATAAA
1 TGAATAAA
7845173 AAGATAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
14 8 0.24
15 1 0.03
16 16 0.47
17 9 0.26
ACGTcount: A:0.65, C:0.02, G:0.13, T:0.20
Consensus pattern (16 bp):
TGAATAAATGAAATAA
Found at i:7845426 original size:65 final size:65
Alignment explanation
Indices: 7845336--7845537 Score: 258
Period size: 65 Copynumber: 3.2 Consensus size: 65
7845326 TGCTTAATGA
* * * *
7845336 AAAAGAAATATAAGTAATATCAAATTTAAATATTTAAAAAGTAAAAGAATAATAAATAAATAGAT
1 AAAACAAATATAAATAATATTAAATTTAAGTATTTAAAAAGTAAAAGAATAATAAATAAATAGAT
* * *
7845401 AAAACAAATATAAATAGTATTAAATTTAAGTATTTAAAAAATAAAAG---AA-CAAT--A-A-AT
1 AAAACAAATATAAATAATATTAAATTTAAGTATTTAAAAAGTAAAAGAATAATAAATAAATAGAT
*
7845458 AAAACAAATATAAATAATATTAAATTTAAGTATTTAAAAAAGTAAAAGAATAATAAACAAATAGA
1 AAAACAAATATAAATAATATTAAATTTAAGTATTT-AAAAAGTAAAAGAATAATAAATAAATAGA
7845523 T
65 T
*
7845524 AAAACGAATATAAA
1 AAAACAAATATAAA
7845538 AGGATGAAAT
Statistics
Matches: 116, Mismatches: 12, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
57 36 0.31
58 12 0.10
59 1 0.01
61 5 0.04
62 4 0.03
64 1 0.01
65 42 0.36
66 15 0.13
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.27
Consensus pattern (65 bp):
AAAACAAATATAAATAATATTAAATTTAAGTATTTAAAAAGTAAAAGAATAATAAATAAATAGAT
Found at i:7845444 original size:57 final size:57
Alignment explanation
Indices: 7845394--7845514 Score: 206
Period size: 57 Copynumber: 2.1 Consensus size: 57
7845384 ATAATAAATA
* *
7845394 AATAGATAAAACAAATATAAATAGTATTAAATTTAAGTATTTAAAAAATAAAAGAAC
1 AATAAATAAAACAAATATAAATAATATTAAATTTAAGTATTTAAAAAATAAAAGAAC
*
7845451 AATAAATAAAACAAATATAAATAATATTAAATTTAAGTATTTAAAAAAGTAAAAGAAT
1 AATAAATAAAACAAATATAAATAATATTAAATTTAAGTATTTAAAAAA-TAAAAGAAC
7845509 AATAAA
1 AATAAA
7845515 CAAATAGATA
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
57 46 0.77
58 14 0.23
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (57 bp):
AATAAATAAAACAAATATAAATAATATTAAATTTAAGTATTTAAAAAATAAAAGAAC
Found at i:7847051 original size:44 final size:44
Alignment explanation
Indices: 7847003--7847525 Score: 541
Period size: 44 Copynumber: 11.8 Consensus size: 44
7846993 TTGTTGCTTC
* * * *
7847003 AATCTACTCCACCGCAACTTCAGGGAGATTAGACTTGTAGA-TTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA-ACTTT
** * * *** * *
7847047 AATCTGCTCCACTGCAACTTCAAAGAGATGAGACTCACATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTT
* * * * *
7847091 AATCTACTCTATTGCAACTTCAGGGAGATGAGATTTGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTT
* *
7847135 AATCTGCTCCACTGTAACTTCAGGGAGATGAGATTTGTAACTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTT
** ** * * *
7847179 AATCTGCTCCACTATAACTTCAATGAGATGAGGTTTGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTT
* *
7847223 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTT
* * *
7847267 AATCTACTCCACTGCAACTTCAGGAAGATAAGATTTGAAACTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTT
* * * *
7847311 AATCTGCTCCACTGCAAGTTCAGGAAGATAAGATTTCTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTT
* * *
7847355 AATATGCTCCACTGCAACTTCAGAGAGATAAGATTTGCT-ATTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAACTTT
*
7847399 CAATCTGCTTCACTGCAACTTCAGGGAGATAAGATTTGTAA-TTT
1 -AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTT
* * * * *
7847443 CAATCTGCTCTACTGTAATTTCAGAGAGATAAGATTTGCT-ATTTT
1 -AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAACTTT
* *
7847488 CAATCTGCTCCACTGCAACTTTAGGGAGATAAAATTTG
1 -AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG
7847526 CCACGATAAC
Statistics
Matches: 405, Mismatches: 68, Indels: 11
0.84 0.14 0.02
Matches are distributed among these distances:
44 333 0.82
45 72 0.18
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTT
Done.