Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 28 of 221
Found at i:7850439 original size:41 final size:41
Alignment explanation
Indices: 7850382--7850615 Score: 360
Period size: 41 Copynumber: 5.7 Consensus size: 41
7850372 GGTTTTAAAA
*
7850382 CCTAGTAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
*
7850423 CCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
*
7850464 CCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* * *
7850505 CCTAGCAGGCTAAGTGCCGGTTATCTAAATCAGGTTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* *
7850546 CCTAGCAGGCTAAGTGTCGGTGATCTGAATCAGGCTTTAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* *
7850587 CCTAACAGGGCTAAGTGCCAGTGAATCTG
1 CCTAGCA-GGCTAAGTGCCGGTG-ATCTG
7850616 TTTAAATTAA
Statistics
Matches: 177, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
41 159 0.90
42 13 0.07
43 5 0.03
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (41 bp):
CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
Found at i:7853733 original size:24 final size:25
Alignment explanation
Indices: 7853680--7853727 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
7853670 TTGGCTCTCA
* *
7853680 CGAGCTTCCCGTTATATGGTTCTTG
1 CGAGCTTCCCGTTATATAGCTCTTG
7853705 CGAGCTTCCCGTTA-ATAGCTCTT
1 CGAGCTTCCCGTTATATAGCTCTT
7853728 CGGAGCATCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.15, C:0.27, G:0.21, T:0.38
Consensus pattern (25 bp):
CGAGCTTCCCGTTATATAGCTCTTG
Found at i:7853831 original size:25 final size:25
Alignment explanation
Indices: 7853801--7853883 Score: 89
Period size: 27 Copynumber: 3.3 Consensus size: 25
7853791 GTCCTAATAT
7853801 ATGGCTCTTCAGAGCTTCCCGATTA
1 ATGGCTCTTCAGAGCTTCCCGATTA
* **
7853826 AAGGCTCTTTCATGAGCTTCTTGATTA
1 ATGGCTC-TTCA-GAGCTTCCCGATTA
*
7853853 ATGGCTC-TCCGAAGCTTCCCGA-TA
1 ATGGCTCTTCAG-AGCTTCCCGATTA
7853877 ATGGCTC
1 ATGGCTC
7853884 GCTTGAACTT
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
24 10 0.21
25 16 0.33
26 4 0.08
27 18 0.38
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.33
Consensus pattern (25 bp):
ATGGCTCTTCAGAGCTTCCCGATTA
Found at i:7853894 original size:24 final size:24
Alignment explanation
Indices: 7853867--7853931 Score: 94
Period size: 24 Copynumber: 2.7 Consensus size: 24
7853857 CTCTCCGAAG
* *
7853867 CTTCCCGATAATGGCTCGCTTGAA
1 CTTCCCGATTATGGCTCGCTTAAA
* *
7853891 CTTCTCGTTTATGGCTCGCTTAAA
1 CTTCCCGATTATGGCTCGCTTAAA
7853915 CTTCCCGATTATGGCTC
1 CTTCCCGATTATGGCTC
7853932 TTATGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.17, C:0.29, G:0.18, T:0.35
Consensus pattern (24 bp):
CTTCCCGATTATGGCTCGCTTAAA
Found at i:7853942 original size:24 final size:24
Alignment explanation
Indices: 7853800--7853942 Score: 71
Period size: 24 Copynumber: 5.8 Consensus size: 24
7853790 CGTCCTAATA
7853800 TATGGCTCTTCA-GAGCTTCCCGAT
1 TATGGCTCTT-ATGAGCTTCCCGAT
* **
7853824 TAAAGGCTCTTTCATGAGCTTCTTGAT
1 T-ATGGCTC-TT-ATGAGCTTCCCGAT
**
7853851 TAATGGCTC-TCCGAAGCTTCCCGAT
1 T-ATGGCTCTTATG-AGCTTCCCGAT
* * * * *
7853876 AATGGCTCGCT-TGAACTTCTCGTT
1 TATGGCTC-TTATGAGCTTCCCGAT
*
7853900 TATGGCTCGCTTA--AACTTCCCGAT
1 TATGGCT--CTTATGAGCTTCCCGAT
7853924 TATGGCTCTTATGAGCTTC
1 TATGGCTCTTATGAGCTTC
7853943 TCGTTATATA
Statistics
Matches: 90, Mismatches: 18, Indels: 22
0.69 0.14 0.17
Matches are distributed among these distances:
22 4 0.04
24 44 0.49
25 18 0.20
26 6 0.07
27 18 0.20
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.36
Consensus pattern (24 bp):
TATGGCTCTTATGAGCTTCCCGAT
Found at i:7853943 original size:48 final size:49
Alignment explanation
Indices: 7853815--7853948 Score: 128
Period size: 48 Copynumber: 2.7 Consensus size: 49
7853805 CTCTTCAGAG
* * * * *
7853815 CTTCCCGATTAAAGGCTCTTTCATGAGCTTCTTGATTAATGGCTCTCCGAAG
1 CTTCCCGATT-ATGGCTCGTT-ATGAGCTTCTCG-TTAATGGCTCGCCGAAA
* * * * **
7853867 CTTCCCGATAATGGCTCGCT-TGAACTTCTCGTTTATGGCTCGCTTAAA
1 CTTCCCGATTATGGCTCGTTATGAGCTTCTCGTTAATGGCTCGCCGAAA
7853915 CTTCCCGATTATGGCTC-TTATGAGCTTCTCGTTA
1 CTTCCCGATTATGGCTCGTTATGAGCTTCTCGTTA
7853949 TATAGCTTGA
Statistics
Matches: 66, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
47 1 0.02
48 40 0.61
49 9 0.14
51 7 0.11
52 9 0.14
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.37
Consensus pattern (49 bp):
CTTCCCGATTATGGCTCGTTATGAGCTTCTCGTTAATGGCTCGCCGAAA
Found at i:7856195 original size:21 final size:21
Alignment explanation
Indices: 7856171--7856213 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
7856161 ATTAATTTTA
7856171 TTTTTTGAGCCCTTTCGGAGG
1 TTTTTTGAGCCCTTTCGGAGG
7856192 TTTTTTGAGCCCTTTCGGAGG
1 TTTTTTGAGCCCTTTCGGAGG
7856213 T
1 T
7856214 AACTCTTGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.09, C:0.19, G:0.28, T:0.44
Consensus pattern (21 bp):
TTTTTTGAGCCCTTTCGGAGG
Found at i:7860623 original size:101 final size:102
Alignment explanation
Indices: 7860507--7860691 Score: 284
Period size: 101 Copynumber: 1.8 Consensus size: 102
7860497 AAAGTGGTGG
* * *
7860507 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGAT-A-GGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCAG-ATGATAATGGTCACATGTGTACT
7860570 ACTATGTGCAGGCTACTATACGTACCGGATAGTTTCGA
65 ACTATGTGCAGGCTACTATACGTACCGGATAGTTTCGA
* * *
7860608 TCACGTGTGTAGTACTATGTGCAAGCTACTGCGTGTATCAGATGGTAATGGTCACATGTGTACTA
1 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCAGATGATAATGGTCACATGTGTACTA
*
7860673 CTATGTGCATGCTACTATA
66 CTATGTGCAGGCTACTATA
7860692 TGAACCAAAC
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
100 4 0.05
101 39 0.52
102 32 0.43
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCAGATGATAATGGTCACATGTGTACTA
CTATGTGCAGGCTACTATACGTACCGGATAGTTTCGA
Found at i:7860668 original size:51 final size:50
Alignment explanation
Indices: 7860504--7860689 Score: 194
Period size: 51 Copynumber: 3.7 Consensus size: 50
7860494 GTGAAAGTGG
* *
7860504 TGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGATA
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAG-ATGGTA
* *** * * *
7860555 -GGTCGCATGTGTAGTACTATGTGCAGGCTACTATACGTACCGGATAGTT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATGGTA
* * * * *
7860604 TCGATCACGTGTGTAGTACTATGTGCAAGCTACTGCGTGTATCAGATGGTAA
1 T-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATGGT-A
* *
7860656 TGGTCACATGTGTACTACTATGTGCATGCTACTA
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTA
7860690 TATGAACCAA
Statistics
Matches: 106, Mismatches: 26, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
49 3 0.03
50 37 0.35
51 65 0.61
52 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.31
Consensus pattern (50 bp):
TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATGGTA
Found at i:7860751 original size:45 final size:45
Alignment explanation
Indices: 7860700--7860788 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
7860690 TATGAACCAA
* *
7860700 ACATTATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCCACCGG
1 ACATTATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCGG
*
7860745 ACATTATTGATTAATAAGGTGGTTGCTATGTGTTGAATCCACCG
1 ACATTATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCG
7860789 AGTATCTGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.36
Consensus pattern (45 bp):
ACATTATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCGG
Found at i:7864254 original size:19 final size:20
Alignment explanation
Indices: 7864230--7864269 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
7864220 ACTTTACTAG
7864230 AAAACAAA-AC-TCTTTACAT
1 AAAACAAATACAT-TTTACAT
7864249 AAAACAAATACATTTTACAT
1 AAAACAAATACATTTTACAT
7864269 A
1 A
7864270 TACGACATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.42
20 10 0.53
21 1 0.05
ACGTcount: A:0.55, C:0.17, G:0.00, T:0.28
Consensus pattern (20 bp):
AAAACAAATACATTTTACAT
Found at i:7867744 original size:16 final size:15
Alignment explanation
Indices: 7867705--7867749 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 15
7867695 TAATGGAGAG
*
7867705 TGAAGAAATGAAATAA
1 TGAATAAAT-AAATAA
7867721 TGACATAAATAAATAGA
1 TGA-ATAAATAAATA-A
7867738 TGAATAAATAAA
1 TGAATAAATAAA
7867750 ATAAATAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
16 17 0.65
17 9 0.35
ACGTcount: A:0.62, C:0.02, G:0.13, T:0.22
Consensus pattern (15 bp):
TGAATAAATAAATAA
Found at i:7867973 original size:30 final size:30
Alignment explanation
Indices: 7867938--7868039 Score: 87
Period size: 33 Copynumber: 3.2 Consensus size: 30
7867928 ATATCATATT
7867938 TAAATATTTAAAAAGTAAAAGAATAATAAA
1 TAAATATTTAAAAAGTAAAAGAATAATAAA
* * * * *
7867968 TAAATAGATAAAACAAATATAAATAATATTAAA
1 TAAATA-TTTAAA-AAGTA-AAAGAATAATAAA
* * *
7868001 TTTAAGTATTTAAAAAGTAAAAGAACAATATA
1 --TAAATATTTAAAAAGTAAAAGAATAATAAA
7868033 TAAATAT
1 TAAATAT
7868040 AATAAATAAA
Statistics
Matches: 53, Mismatches: 14, Indels: 10
0.69 0.18 0.13
Matches are distributed among these distances:
30 12 0.23
31 4 0.08
32 13 0.25
33 15 0.28
34 4 0.08
35 5 0.09
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (30 bp):
TAAATATTTAAAAAGTAAAAGAATAATAAA
Found at i:7868004 original size:65 final size:65
Alignment explanation
Indices: 7867917--7868112 Score: 272
Period size: 65 Copynumber: 3.0 Consensus size: 65
7867907 AATGAAAAGG
* * * * *
7867917 AAATATAAGTAATATCATATTTAAATATTTAAAAAGTAAAAGAATAATAAATAAATAGATAAAAC
1 AAATATAAATAATATTAAATTTAAGTATTTAAAAAGTAAAAGAATAATAAATAAATAAATAAAAC
7867982 AAATATAAATAATATTAAATTTAAGTATTTAAAAAGTAAAAGAACAATATATAAATATAATAAAT
1 AAATATAAATAATATTAAATTTAAGTATTTAAAAAGTAAAAG---AATA-ATAAATA-AATAAAT
7868047 AAAAC
61 AAAAC
7868052 AAATAT--ATAATATTAAATTTAAGTATTTAAAAAAGTAAAAGAATAATAAA-AAATAAATAAA
1 AAATATAAATAATATTAAATTTAAGTATTT-AAAAAGTAAAAGAATAATAAATAAATAAATAAA
7868113 TAGATAAAAC
Statistics
Matches: 120, Mismatches: 5, Indels: 14
0.86 0.04 0.10
Matches are distributed among these distances:
63 10 0.08
64 1 0.01
65 43 0.36
66 4 0.03
68 26 0.22
69 19 0.16
70 17 0.14
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (65 bp):
AAATATAAATAATATTAAATTTAAGTATTTAAAAAGTAAAAGAATAATAAATAAATAAATAAAAC
Found at i:7868108 original size:18 final size:20
Alignment explanation
Indices: 7868079--7868121 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
7868069 TTTAAGTATT
7868079 TAAAAAAGTAAA-AGAATA-A
1 TAAAAAAGTAAATA-AATAGA
7868098 TAAAAAA-TAAATAAATAGA
1 TAAAAAAGTAAATAAATAGA
7868117 TAAAA
1 TAAAA
7868122 CGAATATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.19
Consensus pattern (20 bp):
TAAAAAAGTAAATAAATAGA
Found at i:7875133 original size:41 final size:42
Alignment explanation
Indices: 7875076--7875185 Score: 188
Period size: 41 Copynumber: 2.7 Consensus size: 42
7875066 CATTGAATGT
7875076 AAGGGGTTGCTAAGTGCAGATTCCCCGAAACTCTGAT-CAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAAACTCTGATCCAAA
*
7875117 AAGGGGTTGCTAAGTGCAGATTCCCTGAAACTCTGATCCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAAACTCTGATCCAAA
*
7875159 AA-GGGTTGCTAAGTGTAGATTCCCCGA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGA
7875186 GAGGTTGCTA
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
41 59 0.91
42 6 0.09
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (42 bp):
AAGGGGTTGCTAAGTGCAGATTCCCCGAAACTCTGATCCAAA
Found at i:7875218 original size:26 final size:26
Alignment explanation
Indices: 7875162--7875211 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
7875152 ATCCAAAAAG
7875162 GGTTGCTAAGTGTAGATTCCCCGAGA
1 GGTTGCTAAGTGTAGATTCCCCGAGA
7875188 GGTTGCTAAGTGCTA-ATTCCCCGA
1 GGTTGCTAAGTG-TAGATTCCCCGA
7875212 ATTGTTGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (26 bp):
GGTTGCTAAGTGTAGATTCCCCGAGA
Found at i:7875235 original size:42 final size:43
Alignment explanation
Indices: 7875188--7875338 Score: 121
Period size: 42 Copynumber: 3.6 Consensus size: 43
7875178 TTCCCCGAGA
** *
7875188 GGTTGCTAAGTGCTAATTCC-CCGAATTGTTGATTCTAAAGGT
1 GGTTGCTAAGTGCTAATTCCACCGAATCATTGATTATAAAGGT
* * * * * *
7875230 GGTTGCTAAGTGTTGATTCCACTGTATCCTTGATTGTAAAAGG-
1 GGTTGCTAAGTGCTAATTCCACCGAATCATTGATTAT-AAAGGT
* * * * * *
7875273 GGTTGTTATGTGCTGATTCC-CCGTATCACTGAATAT-AAGGT
1 GGTTGCTAAGTGCTAATTCCACCGAATCATTGATTATAAAGGT
*
7875314 GGTTGCTAAGTGTTAATTCCACCGA
1 GGTTGCTAAGTGCTAATTCCACCGA
7875339 GTAACGGTTA
Statistics
Matches: 85, Mismatches: 20, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
40 4 0.05
41 16 0.19
42 32 0.38
43 28 0.33
44 5 0.06
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.36
Consensus pattern (43 bp):
GGTTGCTAAGTGCTAATTCCACCGAATCATTGATTATAAAGGT
Found at i:7875277 original size:43 final size:45
Alignment explanation
Indices: 7875216--7875337 Score: 123
Period size: 43 Copynumber: 2.9 Consensus size: 45
7875206 CCCCGAATTG
* *
7875216 TTGATTCT-AAAGGTGGTTGCTAAGTGTTGATTCCACTGTATC-C
1 TTGATTATAAAAGGTGGTTGCTAAGTGTTGATTCCACCGTATCAC
* * * *
7875259 TTGATTGTAAAAGG-GGTTGTTATGTGCTGATTCC-CCGTATCAC
1 TTGATTATAAAAGGTGGTTGCTAAGTGTTGATTCCACCGTATCAC
* *
7875302 -TGA--ATATAAGGTGGTTGCTAAGTGTTAATTCCACCG
1 TTGATTATAAAAGGTGGTTGCTAAGTGTTGATTCCACCG
7875338 AGTAACGGTT
Statistics
Matches: 64, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
40 6 0.09
41 16 0.25
42 12 0.19
43 25 0.39
44 5 0.08
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.37
Consensus pattern (45 bp):
TTGATTATAAAAGGTGGTTGCTAAGTGTTGATTCCACCGTATCAC
Found at i:7877919 original size:43 final size:42
Alignment explanation
Indices: 7877827--7877972 Score: 172
Period size: 43 Copynumber: 3.5 Consensus size: 42
7877817 GTTACTCGGT
* *
7877827 GGAATCAGCACTTAGCAACCACC-TTATATTC-AGTGATACGG
1 GGAATCAGCACTTAGCAACCACCTTTACAATCAAG-GATACGG
* *
7877868 GGAATCAGCACATAACAACC-CCTTTCACAATCAAGGATACGG
1 GGAATCAGCACTTAGCAACCACCTTT-ACAATCAAGGATACGG
* ** *
7877910 TGGAATCAGCACTTAGCAACCACCTTTAGAATCAATAATTCGG
1 -GGAATCAGCACTTAGCAACCACCTTTACAATCAAGGATACGG
7877953 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
7877973 TCTCAGGGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
40 2 0.02
41 20 0.22
42 31 0.34
43 32 0.36
44 5 0.06
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21
Consensus pattern (42 bp):
GGAATCAGCACTTAGCAACCACCTTTACAATCAAGGATACGG
Found at i:7877964 original size:42 final size:43
Alignment explanation
Indices: 7877823--7877972 Score: 182
Period size: 42 Copynumber: 3.6 Consensus size: 43
7877813 AACTGTTACT
* * *
7877823 CGGTGGAATCAGCACTTAGCAACCACC-TTATATTCAGTGATA
1 CGGTGGAATCAGCACTTAGCAACCACCTTTACAATCAATGATA
* * *
7877865 CGG-GGAATCAGCACATAACAACC-CCTTTCACAATCAAGGATA
1 CGGTGGAATCAGCACTTAGCAACCACCTTT-ACAATCAATGATA
* * *
7877907 CGGTGGAATCAGCACTTAGCAACCACCTTTAGAATCAATAATT
1 CGGTGGAATCAGCACTTAGCAACCACCTTTACAATCAATGATA
7877950 CGG-GGAATCAGCACTTAGCAACC
1 CGGTGGAATCAGCACTTAGCAACC
7877973 TCTCAGGGAA
Statistics
Matches: 92, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
40 2 0.02
41 20 0.22
42 35 0.38
43 30 0.33
44 5 0.05
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.21
Consensus pattern (43 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTTACAATCAATGATA
Found at i:7877981 original size:26 final size:26
Alignment explanation
Indices: 7877952--7878001 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
7877942 CAATAATTCG
7877952 GGGAATCAGCACTTAGCAACCTCTCA
1 GGGAATCAGCACTTAGCAACCTCTCA
**
7877978 GGGAATTTGCACTTAGCAACCTCT
1 GGGAATCAGCACTTAGCAACCTCT
7878002 TTTTGATTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (26 bp):
GGGAATCAGCACTTAGCAACCTCTCA
Found at i:7878032 original size:41 final size:41
Alignment explanation
Indices: 7877975--7878166 Score: 330
Period size: 41 Copynumber: 4.7 Consensus size: 41
7877965 TAGCAACCTC
* * *
7877975 TCAGGGAATTTGCACTTAGCAACCTCTTTTTGATTAGAGTT
1 TCAGGGAATCTGCACTTAGCAACCCCTTTTTGATCAGAGTT
* *
7878016 TCAGGGAATCTGCACTTAGCAACCCTTTTTTTATCAGAGTT
1 TCAGGGAATCTGCACTTAGCAACCCCTTTTTGATCAGAGTT
*
7878057 TCGGGGAATCTGCACTTAGCAACCCCTTTTTGATCAGAGTT
1 TCAGGGAATCTGCACTTAGCAACCCCTTTTTGATCAGAGTT
7878098 TCAGGGAATCTGCACTTAGCAACCCCTTTTTGATCAGAGTT
1 TCAGGGAATCTGCACTTAGCAACCCCTTTTTGATCAGAGTT
7878139 TCAGGGAATCTGCACTTAGCAACCCCTT
1 TCAGGGAATCTGCACTTAGCAACCCCTT
7878167 ACATTCAATG
Statistics
Matches: 142, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 142 1.00
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.33
Consensus pattern (41 bp):
TCAGGGAATCTGCACTTAGCAACCCCTTTTTGATCAGAGTT
Found at i:7884142 original size:14 final size:14
Alignment explanation
Indices: 7884123--7884162 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
7884113 TTGTTTCACT
7884123 GAAAATGACTTATG
1 GAAAATGACTTATG
* *
7884137 GAAAATGATTTCTG
1 GAAAATGACTTATG
*
7884151 AAAAATGACTTA
1 GAAAATGACTTA
7884163 CTTTTCTGGA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.45, C:0.07, G:0.17, T:0.30
Consensus pattern (14 bp):
GAAAATGACTTATG
Found at i:7884770 original size:18 final size:18
Alignment explanation
Indices: 7884732--7884767 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
7884722 TTATTATTTT
*
7884732 TAAAATTTACTATTAAAA
1 TAAAATTTAATATTAAAA
7884750 TAAAATTTAAATATTAAA
1 TAAAATTT-AATATTAAA
7884768 TAATTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:7886393 original size:2 final size:2
Alignment explanation
Indices: 7886386--7886411 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7886376 TCCATGTTTC
7886386 CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT
7886412 TTATTTTTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:7891335 original size:17 final size:18
Alignment explanation
Indices: 7891302--7891335 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7891292 TAAATTTTAA
7891302 AATAAATATAGGCATAAT
1 AATAAATATAGGCATAAT
*
7891320 AATAAATTTA-GCATAA
1 AATAAATATAGGCATAA
7891336 CATTTATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.56, C:0.06, G:0.09, T:0.29
Consensus pattern (18 bp):
AATAAATATAGGCATAAT
Found at i:7894183 original size:16 final size:17
Alignment explanation
Indices: 7894162--7894194 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7894152 CTTTCGAATA
7894162 TAGTG-ATTTTTTTTAC
1 TAGTGAATTTTTTTTAC
7894178 TAGTGAATTTTTTTTAC
1 TAGTGAATTTTTTTTAC
7894195 CAGTTGATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.21, C:0.06, G:0.12, T:0.61
Consensus pattern (17 bp):
TAGTGAATTTTTTTTAC
Found at i:7896440 original size:44 final size:42
Alignment explanation
Indices: 7896380--7896465 Score: 109
Period size: 42 Copynumber: 2.0 Consensus size: 42
7896370 AAACATTCAA
* * * *
7896380 ATTGAATCATCGAATTACACAGTATAATTCTAATTAGAATATTC
1 ATTGAATCATCAAATTA-A-AATATAATTCTAATCAAAATATTC
*
7896424 ATTGAATCTTCAAATTAAAATATAATTCTAATCAAAATATTC
1 ATTGAATCATCAAATTAAAATATAATTCTAATCAAAATATTC
7896466 CATTATCAGT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
42 21 0.57
43 1 0.03
44 15 0.41
ACGTcount: A:0.44, C:0.13, G:0.06, T:0.37
Consensus pattern (42 bp):
ATTGAATCATCAAATTAAAATATAATTCTAATCAAAATATTC
Found at i:7896974 original size:30 final size:29
Alignment explanation
Indices: 7896906--7896986 Score: 85
Period size: 30 Copynumber: 2.7 Consensus size: 29
7896896 TATTAAAAGT
7896906 ATAATATTTTGGTAAAAAAATTTGGACTTC
1 ATAATATTTTGGTAAAAAAATTT-GACTTC
*
7896936 ATATTATTTTGGTAAATAATAA-TT-ACTTAC
1 ATAATATTTTGGTAAA-AA-AATTTGACTT-C
**
7896966 ATAATATTTTAATAAAAAAAT
1 ATAATATTTTGGTAAAAAAAT
7896987 CCTCTTTATT
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
28 2 0.05
29 6 0.14
30 29 0.67
31 4 0.09
32 2 0.05
ACGTcount: A:0.46, C:0.05, G:0.07, T:0.42
Consensus pattern (29 bp):
ATAATATTTTGGTAAAAAAATTTGACTTC
Found at i:7897336 original size:16 final size:16
Alignment explanation
Indices: 7897315--7897348 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7897305 TTATTTTATT
* *
7897315 TTTATATACTATGAAA
1 TTTATATAATATAAAA
7897331 TTTATATAATATAAAA
1 TTTATATAATATAAAA
7897347 TT
1 TT
7897349 AAATATATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (16 bp):
TTTATATAATATAAAA
Found at i:7900011 original size:6 final size:5
Alignment explanation
Indices: 7899965--7900014 Score: 55
Period size: 5 Copynumber: 9.4 Consensus size: 5
7899955 TAGCTTTGTG
* *
7899965 TTTAT TTTAT TTTAT TTTAT TTTTT TTTAT CTTTCT ATTTAT ATTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT -TTTAT -TTTAT -TTTAT
7900013 TT
1 TT
7900015 ATTAAAATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
5 25 0.64
6 14 0.36
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTAT
Found at i:7913201 original size:347 final size:347
Alignment explanation
Indices: 7912566--7913674 Score: 1546
Period size: 347 Copynumber: 3.2 Consensus size: 347
7912556 GCAATTAAGA
* * *
7912566 AGATTGAAGCTACAACAGCGGATCTTACTTTCCT-AGCGTTGC-AGT-AGAACAGATTGAAGCTA
1 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGA-CATTGCAATTAAG-A-AGATTGAAGCTA
* *
7912628 CAACAGCGGATCTTACTTCCCTAACATTGCAATTAAGAAGATTGAAGCTACAACAGCAGATCTTA
63 CAACAGCGGATCTTACTTCCCTAGCATTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTA
* * *
7912693 CTTTCCAGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGC
128 CTTCCCTGAC-GTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGC
* *
7912758 AATTAAGAATA-TGAAGCTACAACAGCGGATCTTACTTTCCTAGCGCTGTAGTGGAACAGATTGA
192 AATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGCTGCAGTGGAACAGATTGA
7912822 AGCTACAACAGCGGATCTCACTTCCCTGACATTGCAATCAAAAGATTGAGGCCACAACGGCGAAT
257 AGCTACAACAGCGGATCTCACTTCCCTGACATTGCAATCAAAAGATTGAGGCCACAACGGCGAAT
*
7912887 CTTATTTCCATGCGGTGCAGTGAAAC
322 CTTATTTCCATGCGGTGCAGTGGAAC
*
7912913 AGATTGAAGCTACGACAGCGGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCTACAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCTACAA
* * * * *
7912978 CAGCGGATCTTAC-TCTCCTAGCGTTGCAGTGGAA-CAGATTGAAGCTACAACAGCGGATCTCAC
66 CAGCGGATCTTACTTC-CCTAGCATTGCAAT-TAAGAAGATTGAAGCTACAACAGCGGATCTTAC
* * * *
7913041 TTCCCTGACAGTGCAAT-TAAGAAGATTGAAGCTACAACAGTGG-TCTTACTTCCCTGACATTGC
129 TTCCCTGAC-GTGCAGTGGAA-CAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGC
* *
7913104 AATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTCTCCTAGCGTTGCAGTGGAACAGATTGA
192 AATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGCTGCAGTGGAACAGATTGA
7913169 AGCTACAACAGCGGATCTCACTTCCCTGACATTGCAATCAAAAGATTGAGGCCACAACGGCGAAT
257 AGCTACAACAGCGGATCTCACTTCCCTGACATTGCAATCAAAAGATTGAGGCCACAACGGCGAAT
*
7913234 CTTATTTCCAGGCGGTGCAGTGGAAC
322 CTTATTTCCATGCGGTGCAGTGGAAC
* *
7913260 AAATTGAAGCTACAGCAGCGGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCTACAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCTACAA
* *
7913325 CAGTGGGTCTTACTTCCCT-GACATTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTAC-
66 CAGCGGATCTTACTTCCCTAG-CATTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACT
*
7913388 TCTCCT-AGCGTTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTCACTTCCCTGACATTGC
130 TC-CCTGA-CG-TGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGC
* * * * * * *
7913452 AATCAA-AAGATTGAGGCCACAACGGCGAATCTTA-TTTCC-AGGCGGTGCAGTGGAACAAATTG
192 AATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTA-GCGCTGCAGTGGAACAGATTG
* * * * * * * *
7913514 AAGCTACAGCAGCAGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCTACAACAGCGG
256 AAGCTACAACAGCGGATCTCACTTCCCTGACATTGCAATCAA-AAGATTGAGGCCACAACGGCGA
*
7913579 ATCTTACTTTCC-TAGCGTTGCAGTGGAAC
320 ATCTTA-TTTCCAT-GCGGTGCAGTGGAAC
* *
7913608 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAAAATATTGAAGCTACAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCTACAA
7913673 CA
66 CA
7913675 ACATGTCTTA
Statistics
Matches: 681, Mismatches: 62, Indels: 37
0.87 0.08 0.05
Matches are distributed among these distances:
345 1 0.00
346 102 0.15
347 460 0.68
348 116 0.17
349 2 0.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (347 bp):
AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCTACAA
CAGCGGATCTTACTTCCCTAGCATTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTT
CCCTGACGTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATT
AAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGCTGCAGTGGAACAGATTGAAGCT
ACAACAGCGGATCTCACTTCCCTGACATTGCAATCAAAAGATTGAGGCCACAACGGCGAATCTTA
TTTCCATGCGGTGCAGTGGAAC
Found at i:7913666 original size:248 final size:247
Alignment explanation
Indices: 7912554--7913674 Score: 1287
Period size: 248 Copynumber: 4.5 Consensus size: 247
7912544 AAACCATAGT
* * * *
7912554 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCT-AGCGTTGCAGTAGAACAG
1 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGA-CATTGCAAT-GAAAAG
* * *
7912618 ATTGAAGCTACAACAGCGGATCTTACTTCCCTAACATTGCAATTAAGA-AGATTGAAGCTACAAC
64 ATTGAAGCTACAACAGCGGATCTTACTTCCCT-ACGTTGCAGTGAA-ACAGATTGAAGCTACAAC
* * * * * ** * * * * * *
7912682 AGCAGATCTTACTTTCCAGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTC
127 AGCGGATCTCACTTCCCTGACATTGCAAT-CAAAAGATTGAAGCCACAACAGCGAATCTTACTTT
* * ** * * * * *
7912747 CCTGACATTGCAAT-TAA-GAATATGAAGCTACAACAGCGGATCTTACTTTCCT-AGCG
191 CCAGGCGGTGCAGTGGAACAAAT-TGAAGCTACAACAGCGGATCTTACTTCCCTGA-CA
* * * * * * *
7912803 CTGTAGTGGAA-CAGATTGAAGCTACAACAGCGGATCTCACTTCCCTGACATTGCAATCAAAAGA
1 TTGCAAT-TAAGAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATGAAAAGA
* * * * * * * * *
7912867 TTGAGGCCACAACGGCGAATCTTATTTCCATGCGGTGCAGTGAAACAGATTGAAGCTACGACAGC
65 TTGAAGCTACAACAGCGGATCTTACTTCCCTACGTTGCAGTGAAACAGATTGAAGCTACAACAGC
* * * * *
7912932 GGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTCTCCT
130 GGATCTCACTTCCCTGACATTGCAATCAA-AAGATTGAAGCCACAACAGCGAATCTTACTTTCC-
* * *
7912997 A-GCGTTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTCACTTCCCTGACA
193 AGGCGGTGCAGTGGAACAAATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * *
7913051 GTGCAATTAAGAAGATTGAAGCTACAACAGTGG-TCTTACTTCCCTGACATTGCAATTAAGAAGA
1 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATGAA-AAGA
*
7913115 TTGAAGCTACAACAGCGGATCTTAC-TCTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAACA
65 TTGAAGCTACAACAGCGGATCTTACTTC-CCTA-CGTTGCAGTGAAACAGATTGAAGCTACAACA
* *
7913179 GCGGATCTCACTTCCCTGACATTGCAATCAAAAGATTGAGGCCACAACGGCGAATCTTA-TTTCC
128 GCGGATCTCACTTCCCTGACATTGCAATCAAAAGATTGAAGCCACAACAGCGAATCTTACTTTCC
*
7913243 AGGCGGTGCAGTGGAACAAATTGAAGCTACAGCAGCGGATCTTACTTCCCTGACA
193 AGGCGGTGCAGTGGAACAAATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * *
7913298 TTGCAATTAAGAAGATTGAAGCTACAACAGTGGGTCTTACTTCCCTGACATTGCAATTAAGAAGA
1 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATGAA-AAGA
*
7913363 TTGAAGCTACAACAGCGGATCTTAC-TCTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAACA
65 TTGAAGCTACAACAGCGGATCTTACTTC-CCTA-CGTTGCAGTGAAACAGATTGAAGCTACAACA
* *
7913427 GCGGATCTCACTTCCCTGACATTGCAATCAAAAGATTGAGGCCACAACGGCGAATCTTA-TTTCC
128 GCGGATCTCACTTCCCTGACATTGCAATCAAAAGATTGAAGCCACAACAGCGAATCTTACTTTCC
* *
7913491 AGGCGGTGCAGTGGAACAAATTGAAGCTACAGCAGCAGATCTTACTTCCCTGACA
193 AGGCGGTGCAGTGGAACAAATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * *
7913546 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCT-AGCGTTGCAGTGGAACAG
1 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGA-CATTGCAAT-GAAAAG
* * * * *
7913610 ATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAAAATATTGAAGCTACAACA
64 ATTGAAGCTACAACAGCGGATCTTACTTCCCT-ACGTTGCAGTGAAACAGATTGAAGCTACAACA
7913675 ACATGTCTTA
Statistics
Matches: 766, Mismatches: 88, Indels: 37
0.86 0.10 0.04
Matches are distributed among these distances:
246 4 0.01
247 197 0.26
248 454 0.59
249 108 0.14
250 3 0.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (247 bp):
TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATGAAAAGAT
TGAAGCTACAACAGCGGATCTTACTTCCCTACGTTGCAGTGAAACAGATTGAAGCTACAACAGCG
GATCTCACTTCCCTGACATTGCAATCAAAAGATTGAAGCCACAACAGCGAATCTTACTTTCCAGG
CGGTGCAGTGGAACAAATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
Found at i:7913685 original size:50 final size:50
Alignment explanation
Indices: 7912554--7913674 Score: 1049
Period size: 50 Copynumber: 22.6 Consensus size: 50
7912544 AAACCATAGT
* * *
7912554 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCT-AGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGA-CA
* * *
7912604 TTGC-AGTAGAACAGATTGAAGCTACAACAGCGGATCTTACTTCCCTAACA
1 TTGCAATTA-AAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * * * *
7912654 TTGCAATTAAGAAGATTGAAGCTACAACAGCAGATCTTACTTTCCAGGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * ** *
7912704 GTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * *
7912754 TTGCAATTAAGAATA-TGAAGCTACAACAGCGGATCTTACTTTCCT-AGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGA-CA
* * * ** * *
7912803 CTGTAGTGGAACAGATTGAAGCTACAACAGCGGATCTCACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * * * * * *
7912853 TTGCAA-TCAAAAGATTGAGGCCACAACGGCGAATCTTATTTCCATG-CG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * * *
7912901 GTGCAGTGAAACAGATTGAAGCTACGACAGCGGATCTTACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* *
7912951 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTAC-TCTCCT-AGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTC-CCTGA-CA
* ** * *
7913001 TTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTCACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * *
7913051 GTGCAATTAAGAAGATTGAAGCTACAACAGTGG-TCTTACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* *
7913100 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTAC-TCTCCT-AGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTC-CCTGA-CA
* ** * *
7913150 TTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTCACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * * * * * * *
7913200 TTGCAA-TCAAAAGATTGAGGCCACAACGGCGAATCTTA-TTTCCAGGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * * *
7913248 GTGCAGTGGAACAA-ATTGAAGCTACAGCAGCGGATCTTACTTCCCTGACA
1 TTGCAAT-TAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * *
7913298 TTGCAATTAAGAAGATTGAAGCTACAACAGTGGGTCTTACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* *
7913348 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTAC-TCTCCT-AGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTC-CCTGA-CA
* ** * *
7913398 TTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTCACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * * * * * * *
7913448 TTGCAA-TCAAAAGATTGAGGCCACAACGGCGAATCTTA-TTTCCAGGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * * * *
7913496 GTGCAGTGGAACAA-ATTGAAGCTACAGCAGCAGATCTTACTTCCCTGACA
1 TTGCAAT-TAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * *
7913546 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCT-AGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGA-CA
* ** *
7913596 TTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
*
7913646 TTGCAATTAAAAATATTGAAGCTACAACA
1 TTGCAATTAAAAAGATTGAAGCTACAACA
7913675 ACATGTCTTA
Statistics
Matches: 844, Mismatches: 196, Indels: 62
0.77 0.18 0.06
Matches are distributed among these distances:
48 26 0.03
49 251 0.30
50 552 0.65
51 15 0.02
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (50 bp):
TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
Found at i:7915422 original size:3 final size:3
Alignment explanation
Indices: 7915416--7915445 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
7915406 TTTATTATTC
7915416 TAA TAA TAA TAA TAA TAA TAA TAA T-A TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
7915446 TGTTAGTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:7921055 original size:348 final size:347
Alignment explanation
Indices: 7920418--7921528 Score: 1555
Period size: 348 Copynumber: 3.2 Consensus size: 347
7920408 GCAATTAAGA
* * *
7920418 AGATTGAAGCTACAACAGCGGATCTTACTTTCCT-AGCGTTGC-AGT-AGAACAGATTGAAGCTA
1 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGA-CATTGCAATTAAG-A-AGATTGAAGCTA
* *
7920480 CAACAGCGGATCTTACTTCCCTAACATTGCAATTAAGAAGATTGAAGCTACAACAGCAGATCTTA
63 CAACAGCGGATCTTACTTCCCTAGCATTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTA
* * *
7920545 CTTTCCAGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGC
128 CTTCCCTGAC-GTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGC
* *
7920610 AATTAAGAATATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGCTGTAGTGGAACAGATTGA
192 AATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGCTGCAGTGGAACAGATTGA
7920675 AGCTACAACAGCGGATCTCACTTCCCTGACATTGCAATCAAAAGATTGAGGCCACAACGGCGAAT
257 AGCTACAACAGCGGATCTCACTTCCCTGACATTGCAATCAAAAGATTGAGGCCACAACGGCGAAT
*
7920740 CTTATTTCCATGCGGTGCAGTGAAAC
322 CTTATTTCCATGCGGTGCAGTGGAAC
*
7920766 AGATTGAAGCTACGACAGCGGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCTACAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCTACAA
* * * * *
7920831 CAGCGGATCTTAC-TCTCCTAGCGTTGCAGTGGAA-CAGATTGAAGCTACAACAGCGGATCTCAC
66 CAGCGGATCTTACTTC-CCTAGCATTGCAAT-TAAGAAGATTGAAGCTACAACAGCGGATCTTAC
* * * * *
7920894 TTCCCTGACAGTGCAAT-TAAGAAGATTGAAGCTACAACAGTGGGTCTTACTTCCCTGACATTGC
129 TTCCCTGAC-GTGCAGTGGAA-CAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGC
* *
7920958 AATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTCTCCTAGCGTTGCAGTGGAACAGATTGA
192 AATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGCTGCAGTGGAACAGATTGA
7921023 AGCTACAACAGCGGATCTCACTTCCCTGACATTGCAATCAAAAGATTGAGGCCACAACGGCGAAT
257 AGCTACAACAGCGGATCTCACTTCCCTGACATTGCAATCAAAAGATTGAGGCCACAACGGCGAAT
*
7921088 CTTATTTCCAGGCGGTGCAGTGGAAC
322 CTTATTTCCATGCGGTGCAGTGGAAC
* *
7921114 AAATTGAAGCTACAGCAGCGGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCTACAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCTACAA
* *
7921179 CAGTGGGTCTTACTTCCCT-GACATTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTAC-
66 CAGCGGATCTTACTTCCCTAG-CATTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACT
*
7921242 TCTCCT-AGCGTTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTCACTTCCCTGACATTGC
130 TC-CCTGA-CG-TGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGC
* * * * * * *
7921306 AATCAA-AAGATTGAGGCCACAACGGCGAATCTTA-TTTCC-AGGCGGTGCAGTGGAACAAATTG
192 AATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTA-GCGCTGCAGTGGAACAGATTG
* * * * * * * *
7921368 AAGCTACAGCAGCAGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCTACAACAGCGG
256 AAGCTACAACAGCGGATCTCACTTCCCTGACATTGCAATCAA-AAGATTGAGGCCACAACGGCGA
*
7921433 ATCTTACTTTCC-TAGCGTTGCAGTGGAAC
320 ATCTTA-TTTCCAT-GCGGTGCAGTGGAAC
* *
7921462 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAAAATATTGAAGCTACAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCTACAA
7921527 CA
66 CA
7921529 ACATGTCTTA
Statistics
Matches: 682, Mismatches: 64, Indels: 34
0.87 0.08 0.04
Matches are distributed among these distances:
345 1 0.00
346 61 0.09
347 59 0.09
348 549 0.80
349 10 0.01
350 2 0.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (347 bp):
AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCTACAA
CAGCGGATCTTACTTCCCTAGCATTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTT
CCCTGACGTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATT
AAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGCTGCAGTGGAACAGATTGAAGCT
ACAACAGCGGATCTCACTTCCCTGACATTGCAATCAAAAGATTGAGGCCACAACGGCGAATCTTA
TTTCCATGCGGTGCAGTGGAAC
Found at i:7921520 original size:248 final size:247
Alignment explanation
Indices: 7920406--7921528 Score: 1296
Period size: 248 Copynumber: 4.5 Consensus size: 247
7920396 AAACCATAGT
* * * *
7920406 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCT-AGCGTTGCAGTAGAACAG
1 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGA-CATTGCAAT-GAAAAG
* * *
7920470 ATTGAAGCTACAACAGCGGATCTTACTTCCCTAACATTGCAATTAAGA-AGATTGAAGCTACAAC
64 ATTGAAGCTACAACAGCGGATCTTACTTCCCT-ACGTTGCAGTGAA-ACAGATTGAAGCTACAAC
* * * * * ** * * * * * *
7920534 AGCAGATCTTACTTTCCAGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTC
127 AGCGGATCTCACTTCCCTGACATTGCAAT-CAAAAGATTGAAGCCACAACAGCGAATCTTACTTT
* * ** * * * * *
7920599 CCTGACATTGCAAT-TAAGAATATTGAAGCTACAACAGCGGATCTTACTTTCCT-AGCG
191 CCAGGCGGTGCAGTGGAACAA-ATTGAAGCTACAACAGCGGATCTTACTTCCCTGA-CA
* * * * * * *
7920656 CTGTAGTGGAA-CAGATTGAAGCTACAACAGCGGATCTCACTTCCCTGACATTGCAATCAAAAGA
1 TTGCAAT-TAAGAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATGAAAAGA
* * * * * * * * *
7920720 TTGAGGCCACAACGGCGAATCTTATTTCCATGCGGTGCAGTGAAACAGATTGAAGCTACGACAGC
65 TTGAAGCTACAACAGCGGATCTTACTTCCCTACGTTGCAGTGAAACAGATTGAAGCTACAACAGC
* * * * *
7920785 GGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTCTCCT
130 GGATCTCACTTCCCTGACATTGCAATCAA-AAGATTGAAGCCACAACAGCGAATCTTACTTTCC-
* * *
7920850 A-GCGTTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTCACTTCCCTGACA
193 AGGCGGTGCAGTGGAACAAATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * *
7920904 GTGCAATTAAGAAGATTGAAGCTACAACAGTGGGTCTTACTTCCCTGACATTGCAATTAAGAAGA
1 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATGAA-AAGA
*
7920969 TTGAAGCTACAACAGCGGATCTTAC-TCTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAACA
65 TTGAAGCTACAACAGCGGATCTTACTTC-CCTA-CGTTGCAGTGAAACAGATTGAAGCTACAACA
* *
7921033 GCGGATCTCACTTCCCTGACATTGCAATCAAAAGATTGAGGCCACAACGGCGAATCTTA-TTTCC
128 GCGGATCTCACTTCCCTGACATTGCAATCAAAAGATTGAAGCCACAACAGCGAATCTTACTTTCC
*
7921097 AGGCGGTGCAGTGGAACAAATTGAAGCTACAGCAGCGGATCTTACTTCCCTGACA
193 AGGCGGTGCAGTGGAACAAATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * *
7921152 TTGCAATTAAGAAGATTGAAGCTACAACAGTGGGTCTTACTTCCCTGACATTGCAATTAAGAAGA
1 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATGAA-AAGA
*
7921217 TTGAAGCTACAACAGCGGATCTTAC-TCTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAACA
65 TTGAAGCTACAACAGCGGATCTTACTTC-CCTA-CGTTGCAGTGAAACAGATTGAAGCTACAACA
* *
7921281 GCGGATCTCACTTCCCTGACATTGCAATCAAAAGATTGAGGCCACAACGGCGAATCTTA-TTTCC
128 GCGGATCTCACTTCCCTGACATTGCAATCAAAAGATTGAAGCCACAACAGCGAATCTTACTTTCC
* *
7921345 AGGCGGTGCAGTGGAACAAATTGAAGCTACAGCAGCAGATCTTACTTCCCTGACA
193 AGGCGGTGCAGTGGAACAAATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * *
7921400 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCT-AGCGTTGCAGTGGAACAG
1 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGA-CATTGCAAT-GAAAAG
* * * * *
7921464 ATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAAAATATTGAAGCTACAACA
64 ATTGAAGCTACAACAGCGGATCTTACTTCCCT-ACGTTGCAGTGAAACAGATTGAAGCTACAACA
7921529 ACATGTCTTA
Statistics
Matches: 768, Mismatches: 89, Indels: 34
0.86 0.10 0.04
Matches are distributed among these distances:
247 7 0.01
248 569 0.74
249 89 0.12
250 100 0.13
251 3 0.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (247 bp):
TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATGAAAAGAT
TGAAGCTACAACAGCGGATCTTACTTCCCTACGTTGCAGTGAAACAGATTGAAGCTACAACAGCG
GATCTCACTTCCCTGACATTGCAATCAAAAGATTGAAGCCACAACAGCGAATCTTACTTTCCAGG
CGGTGCAGTGGAACAAATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
Found at i:7921539 original size:50 final size:50
Alignment explanation
Indices: 7920406--7921528 Score: 1058
Period size: 50 Copynumber: 22.6 Consensus size: 50
7920396 AAACCATAGT
* * *
7920406 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCT-AGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGA-CA
* * *
7920456 TTGC-AGTAGAACAGATTGAAGCTACAACAGCGGATCTTACTTCCCTAACA
1 TTGCAATTA-AAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * * * *
7920506 TTGCAATTAAGAAGATTGAAGCTACAACAGCAGATCTTACTTTCCAGGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * ** *
7920556 GTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * *
7920606 TTGCAATTAAGAATATTGAAGCTACAACAGCGGATCTTACTTTCCT-AGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGA-CA
* * * ** * *
7920656 CTGTAGTGGAACAGATTGAAGCTACAACAGCGGATCTCACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * * * * * *
7920706 TTGCAA-TCAAAAGATTGAGGCCACAACGGCGAATCTTATTTCCATG-CG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * * *
7920754 GTGCAGTGAAACAGATTGAAGCTACGACAGCGGATCTTACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* *
7920804 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTAC-TCTCCT-AGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTC-CCTGA-CA
* ** * *
7920854 TTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTCACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * *
7920904 GTGCAATTAAGAAGATTGAAGCTACAACAGTGGGTCTTACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* *
7920954 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTAC-TCTCCT-AGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTC-CCTGA-CA
* ** * *
7921004 TTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTCACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * * * * * * *
7921054 TTGCAA-TCAAAAGATTGAGGCCACAACGGCGAATCTTA-TTTCCAGGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * * *
7921102 GTGCAGTGGAACAA-ATTGAAGCTACAGCAGCGGATCTTACTTCCCTGACA
1 TTGCAAT-TAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * *
7921152 TTGCAATTAAGAAGATTGAAGCTACAACAGTGGGTCTTACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* *
7921202 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTAC-TCTCCT-AGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTC-CCTGA-CA
* ** * *
7921252 TTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTCACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * * * * * * *
7921302 TTGCAA-TCAAAAGATTGAGGCCACAACGGCGAATCTTA-TTTCCAGGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * * * *
7921350 GTGCAGTGGAACAA-ATTGAAGCTACAGCAGCAGATCTTACTTCCCTGACA
1 TTGCAAT-TAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * *
7921400 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCT-AGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGA-CA
* ** *
7921450 TTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
*
7921500 TTGCAATTAAAAATATTGAAGCTACAACA
1 TTGCAATTAAAAAGATTGAAGCTACAACA
7921529 ACATGTCTTA
Statistics
Matches: 846, Mismatches: 198, Indels: 58
0.77 0.18 0.05
Matches are distributed among these distances:
48 25 0.03
49 169 0.20
50 637 0.75
51 15 0.02
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (50 bp):
TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
Found at i:7923282 original size:3 final size:3
Alignment explanation
Indices: 7923276--7923305 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
7923266 TTTATTATTC
7923276 TAA TAA TAA TAA TAA TAA TAA TAA T-A TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
7923306 TGTTAGTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:7926279 original size:19 final size:19
Alignment explanation
Indices: 7926255--7926308 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
7926245 AATCTTAAAG
7926255 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
7926274 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7926293 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
7926309 AGATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:7926284 original size:36 final size:36
Alignment explanation
Indices: 7926244--7926315 Score: 103
Period size: 38 Copynumber: 2.0 Consensus size: 36
7926234 TATGGAAACA
7926244 TAATCTTA-A-AGGATATGCAATCTTAGATATGATATG
1 TAATCTTAGATAGGATATGCAATCTTAGA-A-GATATG
*
7926280 TAATCTTAGATATGATATGCAATCTTAGAAGATATG
1 TAATCTTAGATAGGATATGCAATCTTAGAAGATATG
7926316 ATTTTGTAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
36 14 0.42
37 2 0.06
38 17 0.52
ACGTcount: A:0.39, C:0.08, G:0.17, T:0.36
Consensus pattern (36 bp):
TAATCTTAGATAGGATATGCAATCTTAGAAGATATG
Found at i:7926334 original size:22 final size:20
Alignment explanation
Indices: 7926255--7926334 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 20
7926245 AATCTTAAAG
*
7926255 GATATGCAATCTT-AGATAT
1 GATATGTAATCTTGAGATAT
7926274 GATATGTAATCTT-AGATAT
1 GATATGTAATCTTGAGATAT
*
7926293 GATATGCAATCTTAGAAGATAT
1 GATATGTAATCTT-G-AGATAT
*
7926315 GATTTTGTAATCTTGGAGAT
1 GA-TATGTAATCTT-GAGAT
7926335 TTAATTTGTA
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
19 30 0.58
22 12 0.23
23 10 0.19
ACGTcount: A:0.35, C:0.07, G:0.19, T:0.39
Consensus pattern (20 bp):
GATATGTAATCTTGAGATAT
Found at i:7927016 original size:12 final size:12
Alignment explanation
Indices: 7926999--7927025 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7926989 CTTTATAGTC
7926999 TATTTTTTATTT
1 TATTTTTTATTT
7927011 TATTTTTTATTT
1 TATTTTTTATTT
7927023 TAT
1 TAT
7927026 AATTTTGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (12 bp):
TATTTTTTATTT
Found at i:7938823 original size:18 final size:18
Alignment explanation
Indices: 7938800--7938835 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
7938790 CGATATCCAT
7938800 TTCATGGAAAGCAAGCAA
1 TTCATGGAAAGCAAGCAA
*
7938818 TTCATGGAAATCAAGCAA
1 TTCATGGAAAGCAAGCAA
7938836 ATCTTATGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.44, C:0.17, G:0.19, T:0.19
Consensus pattern (18 bp):
TTCATGGAAAGCAAGCAA
Found at i:7948814 original size:24 final size:24
Alignment explanation
Indices: 7948765--7948815 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
7948755 ATTTGATATT
**
7948765 TATTAGAATAAGGTGTTTCACTCC
1 TATTAGAATAAGGTGTTTCAAGCC
*
7948789 TATTAGAATATGGT-TTTACAAGCC
1 TATTAGAATAAGGTGTTT-CAAGCC
7948813 TAT
1 TAT
7948816 AAATAGACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 3 0.13
24 20 0.87
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (24 bp):
TATTAGAATAAGGTGTTTCAAGCC
Found at i:7952242 original size:24 final size:24
Alignment explanation
Indices: 7952193--7952243 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
7952183 ATTTGATATT
**
7952193 TATTAGAATAAGGTGTTTCACTCC
1 TATTAGAATAAGGTGTTTCAAGCC
*
7952217 TATTAGAATATGGT-TTTACAAGCC
1 TATTAGAATAAGGTGTTT-CAAGCC
7952241 TAT
1 TAT
7952244 AAATAGACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 3 0.13
24 20 0.87
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (24 bp):
TATTAGAATAAGGTGTTTCAAGCC
Found at i:7955350 original size:21 final size:22
Alignment explanation
Indices: 7955324--7955366 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
7955314 CCAACAAAGA
*
7955324 AATCAATTTTATG-AATTTTAC
1 AATCAATTGTATGAAATTTTAC
7955345 AATCAATTGTATGCAAATTTTA
1 AATCAATTGTATG-AAATTTTA
7955367 TCGCCAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 12 0.63
23 7 0.37
ACGTcount: A:0.40, C:0.09, G:0.07, T:0.44
Consensus pattern (22 bp):
AATCAATTGTATGAAATTTTAC
Found at i:7955476 original size:21 final size:22
Alignment explanation
Indices: 7955450--7955491 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7955440 GTGTAACATC
7955450 TTAAAT-CTATTT-ATATATGTT
1 TTAAATACT-TTTCATATATGTT
7955471 TTAAATACTTTTCATATATGT
1 TTAAATACTTTTCATATATGT
7955492 AAAAATAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (22 bp):
TTAAATACTTTTCATATATGTT
Found at i:7956065 original size:5 final size:5
Alignment explanation
Indices: 7956055--7956107 Score: 79
Period size: 5 Copynumber: 10.4 Consensus size: 5
7956045 AAAAAATACA
* *
7956055 TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTCC TTTCC TTTCTT TTTCT
1 TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTC-T TTTCT
7956106 TT
1 TT
7956108 CCCATCAACA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
5 41 0.91
6 4 0.09
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTCT
Found at i:7957028 original size:16 final size:15
Alignment explanation
Indices: 7957008--7957049 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
7956998 TCGAATAAAA
*
7957008 TAAATCTTAAATAAT
1 TAAATCCTAAATAAT
*
7957023 TCAAATCCAAAATAAT
1 T-AAATCCTAAATAAT
7957039 TAAATCCTAAA
1 TAAATCCTAAA
7957050 ACTCAACCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (15 bp):
TAAATCCTAAATAAT
Found at i:7957349 original size:15 final size:16
Alignment explanation
Indices: 7957331--7957360 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7957321 ATTTTAAATT
7957331 AATAT-TTTTTATAAA
1 AATATATTTTTATAAA
7957346 AATATATTTTTATAA
1 AATATATTTTTATAA
7957361 TTAAATTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
AATATATTTTTATAAA
Found at i:7966749 original size:21 final size:22
Alignment explanation
Indices: 7966723--7966769 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
7966713 CTCTGCTCAA
*
7966723 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
7966744 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
7966766 ACTC
1 ACTC
7966770 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:7971716 original size:16 final size:16
Alignment explanation
Indices: 7971695--7971728 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
7971685 ATTAGAGTCA
7971695 ATTTTGAGTTCAAGTT
1 ATTTTGAGTTCAAGTT
*
7971711 ATTTTGAGTTTAAGTT
1 ATTTTGAGTTCAAGTT
7971727 AT
1 AT
7971729 ACATGTACGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.26, C:0.03, G:0.18, T:0.53
Consensus pattern (16 bp):
ATTTTGAGTTCAAGTT
Found at i:7974933 original size:284 final size:284
Alignment explanation
Indices: 7974593--7975111 Score: 792
Period size: 284 Copynumber: 1.8 Consensus size: 284
7974583 TGTATCAATG
*
7974593 AATTTCAACACAGGGATATAGTGATCAAAACACAAAATCTACCATATTCCAGAAATACAAAAGTC
1 AATTTCAACACAGGGATATAGTGATCAAAACACAAAATCTACCATATTCAAGAAATACAAAAGTC
* * *
7974658 AATGATCCAAACACAACAACAAAACAGCGTCAAGAACTGGGTTTTGGGTGTTGACTACAA-AAAC
66 AATGATCCAAACACAACAACAAAACAGCATCAAGAACTGGGTTTTGGGTGCTGAATACAAGAAA-
* * **
7974722 AAAAAGGATCAAATCAATGAATTTCAACTAAATGAAGAAA-AA-AAATTGAACCCATTTAAGAAA
130 AAAAAGGATCAAATCAATAAATTTCAACTAAAT-AA-AAACAATAAACTGAACCCACCTAAGAAA
* *
7974785 ATGAGGCAATCTAATTGCAAAAGTGAGCAAAACTAAGAAACAATCTATGTATTGCAATCCGCACA
193 ATAAGGCAATCTAATTGCAAAAGTGAGCAAAACCAAGAAACAATCTATGTATTGCAATCCGCACA
7974850 ATGGAAATGTAAATGTTTAGATTGTGA
258 ATGGAAATGTAAATGTTTAGATTGTGA
*
7974877 AATTTCAACACAGGGATATAGTGATCAAAACACAAAATCTACCATATTCAAGAAATACACAAGTC
1 AATTTCAACACAGGGATATAGTGATCAAAACACAAAATCTACCATATTCAAGAAATACAAAAGTC
* * *
7974942 AATGATCCAAATACAACAACAAAACAGCATCAAGAATTGGGTTTTTGGTGCTGAATACAAGAAAA
66 AATGATCCAAACACAACAACAAAACAGCATCAAGAACTGGGTTTTGGGTGCTGAATACAAGAAAA
* * *** * *
7975007 ATATGGATTTTATCAATAAATTTCAGCTAAATAAAAACAATAACCTGAACCCACCTAAGAAAATA
131 AAAAGGATCAAATCAATAAATTTCAACTAAATAAAAACAATAAACTGAACCCACCTAAGAAAATA
*
7975072 AGGCAATCTAATTGCAAAAGTGAGCAAAGCCAAGAAACAA
196 AGGCAATCTAATTGCAAAAGTGAGCAAAACCAAGAAACAA
7975112 AAGAAAAAGG
Statistics
Matches: 210, Mismatches: 22, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
282 3 0.01
283 4 0.02
284 200 0.95
285 3 0.01
ACGTcount: A:0.47, C:0.17, G:0.14, T:0.22
Consensus pattern (284 bp):
AATTTCAACACAGGGATATAGTGATCAAAACACAAAATCTACCATATTCAAGAAATACAAAAGTC
AATGATCCAAACACAACAACAAAACAGCATCAAGAACTGGGTTTTGGGTGCTGAATACAAGAAAA
AAAAGGATCAAATCAATAAATTTCAACTAAATAAAAACAATAAACTGAACCCACCTAAGAAAATA
AGGCAATCTAATTGCAAAAGTGAGCAAAACCAAGAAACAATCTATGTATTGCAATCCGCACAATG
GAAATGTAAATGTTTAGATTGTGA
Found at i:7979038 original size:20 final size:19
Alignment explanation
Indices: 7979013--7979062 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
7979003 TACAATTGTA
7979013 ATAAATACAACTGAATAATT
1 ATAAATACAA-TGAATAATT
* * *
7979033 ATAAATAGAATGATTTATT
1 ATAAATACAATGAATAATT
7979052 ATAATATACAA
1 ATAA-ATACAA
7979063 ATTGATTAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 11 0.44
20 14 0.56
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.34
Consensus pattern (19 bp):
ATAAATACAATGAATAATT
Found at i:7980570 original size:3 final size:3
Alignment explanation
Indices: 7980562--7980589 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7980552 TAGTTTACCC
7980562 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
7980590 GGGTTTTGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7984200 original size:20 final size:20
Alignment explanation
Indices: 7984175--7984222 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
7984165 AATATATCTA
7984175 AAACACGTAGACAGAATTGT
1 AAACACGTAGACAGAATTGT
7984195 AAACACGTAGACAGAATTGT
1 AAACACGTAGACAGAATTGT
7984215 AAACACGT
1 AAACACGT
7984223 GTATACAAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.46, C:0.17, G:0.19, T:0.19
Consensus pattern (20 bp):
AAACACGTAGACAGAATTGT
Found at i:7986150 original size:16 final size:16
Alignment explanation
Indices: 7986129--7986160 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
7986119 CGCTGTATTA
7986129 GAATAGAGGCGTAATG
1 GAATAGAGGCGTAATG
7986145 GAATAGAGGCGTAATG
1 GAATAGAGGCGTAATG
7986161 ACAAATCAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.38, T:0.19
Consensus pattern (16 bp):
GAATAGAGGCGTAATG
Found at i:7986191 original size:45 final size:45
Alignment explanation
Indices: 7986140--7986251 Score: 199
Period size: 45 Copynumber: 2.5 Consensus size: 45
7986130 AATAGAGGCG
7986140 TAATGGAATAGAGGCGTAAT-GACAAATCAATTGTTTGGTTGAATA
1 TAATGGAATAGAGGCGTAATAG-CAAATCAATTGTTTGGTTGAATA
*
7986185 TAATGGAATAGAGGCGTAATAGCAAATCAATTGTTTGGTTGAATG
1 TAATGGAATAGAGGCGTAATAGCAAATCAATTGTTTGGTTGAATA
7986230 TAATGGAATAGAGGCGTAATAG
1 TAATGGAATAGAGGCGTAATAG
7986252 TTTTCTTGTG
Statistics
Matches: 65, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
45 64 0.98
46 1 0.02
ACGTcount: A:0.38, C:0.06, G:0.27, T:0.29
Consensus pattern (45 bp):
TAATGGAATAGAGGCGTAATAGCAAATCAATTGTTTGGTTGAATA
Found at i:7986456 original size:18 final size:17
Alignment explanation
Indices: 7986434--7986468 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7986424 TAATTATTAA
*
7986434 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
7986452 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
7986469 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:7986547 original size:117 final size:119
Alignment explanation
Indices: 7986409--7986689 Score: 403
Period size: 117 Copynumber: 2.4 Consensus size: 119
7986399 ATAATTTAAT
* *
7986409 TATATTTTAACATAATAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTA
1 TATAATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTA
*
7986474 ATAATCAATATTATTATATGAATTT-C-ATATAATAATATATGATACTATAAAA
66 ATAATCAATATTATTATATGAATTTACAAAATAATAATATATGATACTATAAAA
*
7986526 TATAATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTA
1 TATAATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTA
* *
7986591 ATAATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAA
66 ATAATCAATATTATTATATGAATTTAC-AAAATAATAATATATGATACTATAAAA
*
7986646 TATTA-TTAA-ATATATT-TTAATTAAAATATATGATTTAA-TAAAAT
1 TATAATTTAACATA-ATTATT-ATT-AAATATAT--TTTAATTAAAAT
7986690 TTAAAAAATT
Statistics
Matches: 149, Mismatches: 7, Indels: 12
0.89 0.04 0.07
Matches are distributed among these distances:
117 86 0.58
118 6 0.04
119 10 0.07
120 36 0.24
121 6 0.04
122 5 0.03
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.44
Consensus pattern (119 bp):
TATAATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTA
ATAATCAATATTATTATATGAATTTACAAAATAATAATATATGATACTATAAAA
Found at i:7986572 original size:18 final size:17
Alignment explanation
Indices: 7986549--7986585 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
7986539 AATTATTATT
7986549 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
7986565 AAATATATGATTTAATA
1 AAATATATGATTTAATA
7986582 AAAT
1 AAAT
7986586 TCTTAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:7986634 original size:61 final size:60
Alignment explanation
Indices: 7986449--7986636 Score: 169
Period size: 60 Copynumber: 3.2 Consensus size: 60
7986439 TTTTAATTAA
* *
7986449 AATATATAATTTAATAAAATTCTTAATAATCAATATTATTATATGAATTT-C-ATATAAT
1 AATATATGATTTAATAAAATTCTTAATAATCAATATTATTATATGAATTTACTAAATAAT
* * * * *
7986507 AATATATGATACT-ATAAAATATAATTTAA-CAT-AATTATTATTAAAT-ATATTT--TAATTAA
1 AATATATGAT-TTAATAAAAT-T--CTTAATAATCAA-TATTATTATATGA-ATTTACTAAATAA
7986566 -
60 T
* *
7986566 AATATATGATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTAAAATCAT
1 AATATATGATTTAATAAAATTCTTAATAATCAATATTATTATATGAATTTACT-AAATAAT
7986627 AATATATGAT
1 AATATATGAT
7986637 ACTATAAAAT
Statistics
Matches: 101, Mismatches: 14, Indels: 27
0.71 0.10 0.19
Matches are distributed among these distances:
56 4 0.04
57 15 0.15
58 21 0.21
59 23 0.23
60 24 0.24
61 14 0.14
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (60 bp):
AATATATGATTTAATAAAATTCTTAATAATCAATATTATTATATGAATTTACTAAATAAT
Found at i:7986676 original size:18 final size:17
Alignment explanation
Indices: 7986653--7986689 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
7986643 AAATATTATT
7986653 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
7986669 AAATATATGATTTAATA
1 AAATATATGATTTAATA
7986686 AAAT
1 AAAT
7986690 TTAAAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:7986778 original size:18 final size:18
Alignment explanation
Indices: 7986755--7986838 Score: 59
Period size: 18 Copynumber: 4.8 Consensus size: 18
7986745 TTATTATTAA
7986755 ATATAATTTAATAATAAT
1 ATATAATTTAATAATAAT
* *
7986773 ATATAATTTCATAAT-TT
1 ATATAATTTAATAATAAT
* * *
7986790 AACATAA-TTATTATTAA-
1 -ATATAATTTAATAATAAT
*
7986807 ATATATTTTAATTAA-AAT
1 ATATAATTTAA-TAATAAT
*
7986825 ATATGATTTAATAA
1 ATATAATTTAATAA
7986839 AATTTAAAAT
Statistics
Matches: 48, Mismatches: 13, Indels: 11
0.67 0.18 0.15
Matches are distributed among these distances:
16 4 0.08
17 14 0.29
18 30 0.62
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.46
Consensus pattern (18 bp):
ATATAATTTAATAATAAT
Found at i:7986809 original size:152 final size:153
Alignment explanation
Indices: 7986646--7986939 Score: 554
Period size: 153 Copynumber: 1.9 Consensus size: 153
7986636 TACTATAAAA
*
7986646 TATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTTAAAA-AATTATTACTAATA
1 TATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTTAAAATAAATATTACTAATA
*
7986710 AATTTTCTAATATGAATTTGTATAATTTTAAATAATTATTATTAAATATAATTTAATAATAATAT
66 AATTTTCTAATATGAATTTGTATAATTTAAAATAATTATTATTAAATATAATTTAATAATAATAT
7986775 ATAATTTCATAATTTAACATAAT
131 ATAATTTCATAATTTAACATAAT
7986798 TATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTTAAAATAAATATTACTAATA
1 TATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTTAAAATAAATATTACTAATA
*
7986863 AATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTAAATATAATTTAATAATAATAT
66 AATTTTCTAATATGAATTTGTATAATTTAAAATAATTATTATTAAATATAATTTAATAATAATAT
7986928 ATAATTTCATAA
131 ATAATTTCATAA
7986940 AATTCTTGAT
Statistics
Matches: 138, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
152 50 0.36
153 88 0.64
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (153 bp):
TATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTTAAAATAAATATTACTAATA
AATTTTCTAATATGAATTTGTATAATTTAAAATAATTATTATTAAATATAATTTAATAATAATAT
ATAATTTCATAATTTAACATAAT
Found at i:7986906 original size:101 final size:100
Alignment explanation
Indices: 7986783--7987050 Score: 340
Period size: 91 Copynumber: 2.7 Consensus size: 100
7986773 ATATAATTTC
* * * *
7986783 ATAATTTAACATAATTATTATTAAATATATTTTAATTAA-AATATATGATTTAATAAAATTTAAA
1 ATAATTTAAAATAATTATTATTAAATATAATTTAA-TAATAATATATAATTTCATAAAATTTAAA
*
7986847 ATAAATATTACTAATAAATTTTCTTATATGAATTTGT
65 ATAAATATTA-TAATAAATTTTCTTATATGAATTTAT
7986884 ATAATTTAAAATAATTATTATTAAATATAATTTAATAATAATATATAATTTCATAAAA--T----
1 ATAATTTAAAATAATTATTATTAAATATAATTTAATAATAATATATAATTTCATAAAATTTAAAA
* *
7986943 T--CT-TGATAATAAATTTTCTTATATGAATTTAT
66 TAAATATTATAATAAATTTTCTTATATGAATTTAT
* *
7986975 ATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAA
1 ATAATTTAAAATAATTATTATTAAATATAATTTAATAATAATATATAATTTCATAAAA-T-TTAA
7987040 TAATAAATATT
64 -AATAAATATT
7987051 CTTATATGAA
Statistics
Matches: 143, Mismatches: 11, Indels: 24
0.80 0.06 0.13
Matches are distributed among these distances:
91 81 0.57
92 2 0.01
93 1 0.01
95 2 0.01
99 1 0.01
100 4 0.03
101 50 0.35
102 1 0.01
103 1 0.01
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (100 bp):
ATAATTTAAAATAATTATTATTAAATATAATTTAATAATAATATATAATTTCATAAAATTTAAAA
TAAATATTATAATAAATTTTCTTATATGAATTTAT
Found at i:7986931 original size:44 final size:43
Alignment explanation
Indices: 7986883--7987025 Score: 139
Period size: 44 Copynumber: 3.2 Consensus size: 43
7986873 TATGAATTTG
7986883 TATAATTTAAAATAATTATTATTAAATATAATTTAATAATAATA
1 TATAATTTAAAATAATTATTATTAAATATAATTTAATAAT-ATA
* * * *
7986927 TATAATTTCATAA-AATTCTTGATAATAAAT-T-TTCTTATATGAATTTA
1 TATAATTT-AAAATAATTATT-AT--TAAATATAAT-TTA-AT-AATATA
*
7986974 TATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTATTATTAAATATAATTTAATAAT-ATA
7987018 TATAATTT
1 TATAATTT
7987026 CATAAAATTC
Statistics
Matches: 79, Mismatches: 9, Indels: 22
0.72 0.08 0.20
Matches are distributed among these distances:
43 3 0.04
44 31 0.39
45 10 0.13
46 10 0.13
47 22 0.28
48 3 0.04
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (43 bp):
TATAATTTAAAATAATTATTATTAAATATAATTTAATAATATA
Found at i:7986954 original size:91 final size:91
Alignment explanation
Indices: 7986858--7987064 Score: 369
Period size: 91 Copynumber: 2.3 Consensus size: 91
7986848 TAAATATTAC
* *
7986858 TAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
7986923 AATATATAATTTCATAAAATTCTTGA
66 AATATATAATTTCATAAAATTCTTAA
7986949 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
7987014 GATATATAATTTCATAAAATTCTTAA
66 AATATATAATTTCATAAAATTCTTAA
*
7987040 TAATAAATATTCTTATATGAATTTA
1 TAATAAATTTTCTTATATGAATTTA
7987065 CTAAAATCAT
Statistics
Matches: 111, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
91 111 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (91 bp):
TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
AATATATAATTTCATAAAATTCTTAA
Found at i:7987047 original size:47 final size:46
Alignment explanation
Indices: 7986905--7987049 Score: 156
Period size: 47 Copynumber: 3.2 Consensus size: 46
7986895 TAATTATTAT
*
7986905 TAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAA
1 TAAATATAATTTAATAAT-ATATATAATTTCATAAAATTCTTAATAA
* * ** *
7986952 TAAAT-T-TTCTTATATGAATTTATATAA-TT--TAAAATAATTAATAT
1 TAAATATAAT-TTA-AT-AATATATATAATTTCATAAAATTCTTAATAA
7986996 TAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAA
1 TAAATATAATTTAATAAT-ATATATAATTTCATAAAATTCTTAATAA
7987043 TAAATAT
1 TAAATAT
7987050 TCTTATATGA
Statistics
Matches: 78, Mismatches: 11, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
43 3 0.04
44 25 0.32
45 7 0.09
46 7 0.09
47 33 0.42
48 3 0.04
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (46 bp):
TAAATATAATTTAATAATATATATAATTTCATAAAATTCTTAATAA
Found at i:7994444 original size:27 final size:27
Alignment explanation
Indices: 7994401--7994466 Score: 109
Period size: 26 Copynumber: 2.5 Consensus size: 27
7994391 AAAATTAACT
7994401 AAAATAT-TATAACTTTTTTTATTTACC
1 AAAATATATATAA-TTTTTTTATTTACC
7994428 AAAATATATA-AATTTTTTTATTTACC
1 AAAATATATATAATTTTTTTATTTACC
7994454 AAAATATATATAA
1 AAAATATATATAA
7994467 AAAAACCTGC
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
26 24 0.65
27 11 0.30
28 2 0.05
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (27 bp):
AAAATATATATAATTTTTTTATTTACC
Found at i:7994554 original size:27 final size:27
Alignment explanation
Indices: 7994515--7994590 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 27
7994505 AACTAGTCAC
**
7994515 GCCAATGGTATTGGCGGCACCAATGGT
1 GCCAATGCAATTGGCGGCACCAATGGT
*
7994542 GCCAATGCCATTGGCGGCACCAATGGT
1 GCCAATGCAATTGGCGGCACCAATGGT
*
7994569 GCC-ATACTAATTGGCGGCACCA
1 GCCAATGC-AATTGGCGGCACCA
7994591 CTCGTATTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 3 0.07
27 41 0.93
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.20
Consensus pattern (27 bp):
GCCAATGCAATTGGCGGCACCAATGGT
Found at i:7994762 original size:19 final size:21
Alignment explanation
Indices: 7994724--7994762 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
7994714 AATAACTGAT
*
7994724 TATATTGTTGTTATTATTTTG
1 TATATTGTTGTTAATATTTTG
7994745 TATATT-TTG-TAATATTTT
1 TATATTGTTGTTAATATTTT
7994763 TTGTTTTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 3 0.18
21 6 0.35
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.67
Consensus pattern (21 bp):
TATATTGTTGTTAATATTTTG
Found at i:7995075 original size:26 final size:26
Alignment explanation
Indices: 7995046--7995098 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
7995036 TTTTAGTGTG
*
7995046 TATTATTTTGAGTATAAAATTATTAA
1 TATTATTTTGAGTATAAAATTAATAA
7995072 TATTATTTTGAGTATAAAATTAATAA
1 TATTATTTTGAGTATAAAATTAATAA
7995098 T
1 T
7995099 TTTAGTGTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (26 bp):
TATTATTTTGAGTATAAAATTAATAA
Found at i:7995142 original size:26 final size:25
Alignment explanation
Indices: 7995044--7995143 Score: 82
Period size: 26 Copynumber: 4.0 Consensus size: 25
7995034 AATTTTAGTG
7995044 TGTATTATTTTGAGTATAAAATTATT
1 TGTATTATTTTGAGTATAAAATT-TT
**
7995070 AATATTATTTTGAGTATAAAA---T
1 TGTATTATTTTGAGTATAAAATTTT
* * * * *
7995092 T-AATAATTTTAGTGTGTAATATTTT
1 TGTATTATTTT-GAGTATAAAATTTT
7995117 GTGTATTATTTTGAGTATAAAATTTT
1 -TGTATTATTTTGAGTATAAAATTTT
7995143 T
1 T
7995144 TTAAGTAATT
Statistics
Matches: 55, Mismatches: 13, Indels: 13
0.68 0.16 0.16
Matches are distributed among these distances:
21 7 0.13
22 8 0.15
25 2 0.04
26 31 0.56
27 7 0.13
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (25 bp):
TGTATTATTTTGAGTATAAAATTTT
Found at i:7995957 original size:27 final size:28
Alignment explanation
Indices: 7995909--7995979 Score: 114
Period size: 27 Copynumber: 2.7 Consensus size: 28
7995899 AAAAATAAAA
7995909 ATTTACCAAAATAT-T--ATCTTTTTTT
1 ATTTACCAAAATATATAAATCTTTTTTT
7995934 ATTTACCAAAATATATAAAT-TTTTTTT
1 ATTTACCAAAATATATAAATCTTTTTTT
7995961 ATTTACCAAAATATATAAA
1 ATTTACCAAAATATATAAA
7995980 AAAATAAAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
25 14 0.33
26 1 0.02
27 26 0.60
28 2 0.05
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (28 bp):
ATTTACCAAAATATATAAATCTTTTTTT
Found at i:7996137 original size:4 final size:4
Alignment explanation
Indices: 7996128--7996277 Score: 105
Period size: 4 Copynumber: 37.0 Consensus size: 4
7996118 GAAGGAGAGG
* * * *
7996128 GAAA GAAA GAAA GAAA GAGA GAAA GAAA GGAA GAAA GGAGAG GGAA GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA -GA-AA GAAA GAAA
* * *
7996178 G-AA -AAA GAAG GAAA GAAA GGGAAA G-GA GAAGA GAAA AAAA GAAA GAAA
1 GAAA GAAA GAAA GAAA GAAA --GAAA GAAA GAA-A GAAA GAAA GAAA GAAA
* *
7996226 G-AA G-AA GAAGA GAAG GAAAA GAGAA GAAA -AAA GAAA GAAA GAAG GAAA
1 GAAA GAAA GAA-A GAAA G-AAA GA-AA GAAA GAAA GAAA GAAA GAAA GAAA
7996274 GAAA
1 GAAA
7996278 AGGAAAAGGT
Statistics
Matches: 115, Mismatches: 18, Indels: 26
0.72 0.11 0.16
Matches are distributed among these distances:
3 15 0.13
4 77 0.67
5 18 0.16
6 5 0.04
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:7996220 original size:44 final size:40
Alignment explanation
Indices: 7996128--7996285 Score: 132
Period size: 40 Copynumber: 3.9 Consensus size: 40
7996118 GAAGGAGAGG
* *
7996128 GAAAGAAAGAAAGAAAGAG-A-GAAAGAAAGGAAGAA-AGGA
1 GAAA-AAAGAAAGAAAAAGAAGGAAAGAAAGGAA-AAGAGAA
*** *
7996167 GAGGGAAGAAAGAAAAAGAAGGAAAGAAAGGGAAAGGAGAAGA
1 GAAAAAAGAAAGAAAAAGAAGGAAAGAAA-GGAAAAGAG-A-A
7996210 GAAAAAAAGAAAGAAAGAAGAA-G-AAGAGAAGGAAAAGAGAA
1 G-AAAAAAGAAAGAAA-AAGAAGGAAAGA-AAGGAAAAGAGAA
7996251 GAAAAAAGAAAG--AAAGAAGGAAAGAAAAGGAAAAG
1 GAAAAAAGAAAGAAAAAGAAGGAAAG-AAAGGAAAAG
7996286 GTAATTTTAT
Statistics
Matches: 97, Mismatches: 10, Indels: 24
0.74 0.08 0.18
Matches are distributed among these distances:
37 5 0.05
38 14 0.14
39 15 0.15
40 21 0.22
41 8 0.08
42 1 0.01
43 14 0.14
44 14 0.14
45 5 0.05
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (40 bp):
GAAAAAAGAAAGAAAAAGAAGGAAAGAAAGGAAAAGAGAA
Found at i:7996224 original size:48 final size:47
Alignment explanation
Indices: 7996172--7996283 Score: 126
Period size: 44 Copynumber: 2.4 Consensus size: 47
7996162 AAGGAGAGGG
* *
7996172 AAGAAAGAAAAAGAAGGAAAGAAAGGGAAAGGAGAAGAGAAAA-AAAGA
1 AAGAAAGAAAAAGAAGGAAAG-AA-GGAAAAGAGAAGAAAAAAGAAAGA
*
7996220 AAGAAAGAAGAAGAA-G--AGAAGGAAAAGAGAAGAAAAAAGAAAGA
1 AAGAAAGAAAAAGAAGGAAAGAAGGAAAAGAGAAGAAAAAAGAAAGA
*
7996264 AAGAAGGAAAGAA-AAGGAAA
1 AAGAAAGAAA-AAGAAGGAAA
7996284 AGGTAATTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
43 16 0.30
44 17 0.31
45 5 0.09
47 2 0.04
48 14 0.26
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (47 bp):
AAGAAAGAAAAAGAAGGAAAGAAGGAAAAGAGAAGAAAAAAGAAAGA
Found at i:7996226 original size:70 final size:74
Alignment explanation
Indices: 7996125--7996277 Score: 178
Period size: 70 Copynumber: 2.1 Consensus size: 74
7996115 GCAGAAGGAG
* * * *
7996125 AGGGAAAGAAAGAAAGAAAGAGAGAAAGAAAGGAAGAA-AGGAG-AGG-GAAGA-AAG-AAAAAG
1 AGGGAAAGAAAGAAAGAAAAAAAGAAAGAAA-GAAGAAGAAGAGAAGGAAAAGAGAAGAAAAAAG
*
7996185 AAGGAAAGAA
65 AAAGAAAGAA
*
7996195 AGGGAAAG-GAGAAGAGAAAAAAAGAAAGAAAGAAGAAGAAGAGAAGGAAAAGAGAAGAAAAAAG
1 AGGGAAAGAAAGAA-AGAAAAAAAGAAAGAAAGAAGAAGAAGAGAAGGAAAAGAGAAGAAAAAAG
7996259 AAAGAAAG-A
65 AAAGAAAGAA
7996268 A-GGAAAGAAA
1 AGGGAAAGAAA
7996278 AGGAAAAGGT
Statistics
Matches: 69, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
69 10 0.14
70 27 0.39
71 3 0.04
72 10 0.14
73 6 0.09
74 13 0.19
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (74 bp):
AGGGAAAGAAAGAAAGAAAAAAAGAAAGAAAGAAGAAGAAGAGAAGGAAAAGAGAAGAAAAAAGA
AAGAAAGAA
Found at i:7996253 original size:29 final size:29
Alignment explanation
Indices: 7996204--7996277 Score: 93
Period size: 29 Copynumber: 2.7 Consensus size: 29
7996194 AAGGGAAAGG
* *
7996204 AGAAGAGAA-AAAAAGAAAGAAAGAAG-A
1 AGAAGAGAAGGAAAAGAAAGAAAAAAGAA
7996231 AGAAGAGAAGGAAAAGAGAAGAAAAAAGAA
1 AGAAGAGAAGGAAAAGA-AAGAAAAAAGAA
7996261 AGAA-AGAAGG-AAAGAAA
1 AGAAGAGAAGGAAAAGAAA
7996278 AGGAAAAGGT
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 11 0.26
28 11 0.26
29 15 0.36
30 5 0.12
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (29 bp):
AGAAGAGAAGGAAAAGAAAGAAAAAAGAA
Found at i:7996256 original size:11 final size:11
Alignment explanation
Indices: 7996203--7996278 Score: 54
Period size: 11 Copynumber: 6.9 Consensus size: 11
7996193 AAAGGGAAAG
7996203 GAGAAGAGAAAA
1 GAGAAGA-AAAA
7996215 -A-AAGAAAGAA
1 GAGAAGAAA-AA
*
7996225 -AGAAGAAGAA
1 GAGAAGAAAAA
*
7996235 GAGAAGGAAAA
1 GAGAAGAAAAA
7996246 GAGAAGAAAAA
1 GAGAAGAAAAA
7996257 -AGAAAGAAAGAA
1 GAG-AAGAAA-AA
7996269 G-GAAAGAAAA
1 GAG-AAGAAAA
7996279 GGAAAAGGTA
Statistics
Matches: 54, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
9 2 0.04
10 11 0.20
11 31 0.57
12 10 0.19
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (11 bp):
GAGAAGAAAAA
Found at i:7996609 original size:11 final size:12
Alignment explanation
Indices: 7996586--7996610 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7996576 CGAAAATAAT
7996586 AAAATGCGAAAA
1 AAAATGCGAAAA
7996598 AAAATGCGAAAA
1 AAAATGCGAAAA
7996610 A
1 A
7996611 TGCACACGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.08, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAATGCGAAAA
Found at i:8000976 original size:130 final size:130
Alignment explanation
Indices: 8000643--8002779 Score: 697
Period size: 134 Copynumber: 16.0 Consensus size: 130
8000633 TGGATGTGAT
** *
8000643 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGCTCTTCACTCTATTCCACTGTTGCCTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTGTTGCCCAGGG
**
8000708 AGATAGAACTACCAGCTTCAATGTACTCCACCGTAATCAGTGGGAGGTAAAATCTGCCATCTTCG
66 AGATAGAACTACTGGCTTCAATGTACTCCACCGTAATCA--GGGAGGTAAAATCTGCCATCTTCG
*
8000773 AT
129 AC
* * * **** * *
8000775 CTGCTTCGCTGCCAAATACAGGA-ATGCAAGATCTGCAATCTTCACTCTATTCCACTGTTGCCCA
1 CTGCTCCACTACTGCTTA-GGGAGAT--AAGATCTGTAATCTTCACTCTATTCCACTGTTGCCCA
* *
8000839 GGGAGATAGAACTACTGGCTTTAATGTACTCCACCGTAATCAGGGAGGTAAAATCCGCCATCTTC
63 GGGAGATAGAACTACTGGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCTTC
8000904 GAC
128 GAC
*
8000907 CTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAATCTTCGA-TCTATTCCACTGTTGCCCAGG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTC-ACTCTATTCCACTGTTGCCCAGG
* * * *
8000971 AAGATAGAACTA-TCGGCTTCAATGTACTCCACTGTAGTCACAGAGAGGTAAAATCTGCCATCTT
65 GAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAAT--CAGGGAGGTAAAATCTGCCATCTT
*
8001035 CGAT
127 CGAC
* * * * *** * * ** * * *****
8001039 CTACTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATAC
1 CTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG--TTGCCC
** * * * * *
8001104 AGGGAGATAGAGTTA-TCAGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAAAATCCGCCATCT
62 AGGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCT
8001168 TCGAC
126 TCGAC
* * * *** * * ** * * *****
8001173 CTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATAC
1 CTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG--TTGCCC
** * * *
8001238 AGGGAGATAGAGTTA-TCGGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAAAATCTGCCATCT
62 AGGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCT
*
8001302 TCGAT
126 TCGAC
* * * *** * * ** * * *****
8001307 CTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATAC
1 CTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG--TTGCCC
** * * *
8001372 AGGGAGATAGAGTTA-TCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCATCT
62 AGGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCT
8001436 TCGAC
126 TCGAC
* * * *** * * ** * * *****
8001441 CTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATAC
1 CTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG--TTGCCC
** * *
8001506 AGGGAGATAGAGTTA-TCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
62 AGGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCT
*
8001570 TCGAT
126 TCGAC
* * * *** * * ** * *****
8001575 CTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATAC
1 CTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG--TTGCCC
** * * *
8001640 AGGGAGATAGAGTTA-TCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCATCT
62 AGGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCT
8001704 TCGAC
126 TCGAC
* * * *** * * ** * * *****
8001709 CTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATAC
1 CTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG--TTGCCC
** * *
8001774 AGGGAGATAGAGTTA-TCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
62 AGGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCT
*
8001838 TCGAT
126 TCGAC
* * * *** * * ** * * *****
8001843 CTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATAC
1 CTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG--TTGCCC
** * * *
8001908 AGGGAGATAGAGTTA-TCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCATCT
62 AGGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCT
8001972 TCGAC
126 TCGAC
* * * *** * * ** * * *****
8001977 CTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATAC
1 CTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG--TTGCCC
** * *
8002042 AGGGAGATAGAGTTA-TCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
62 AGGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCT
*
8002106 TCGAT
126 TCGAC
* * * *** * * ** * *****
8002111 CTGCTTCGCTGTCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATAC
1 CTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG--TTGCCC
** * * *
8002176 AGGGAGATAGAGTTA-TCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCATCT
62 AGGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCT
8002240 TCGAC
126 TCGAC
* * * *** * * ** * * *****
8002245 CTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATAC
1 CTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG--TTGCCC
** * *
8002310 AGGGAGATAGAGTTA-TCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
62 AGGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCT
*
8002374 TCGAT
126 TCGAC
* * * *** * * ** * *****
8002379 CTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATAC
1 CTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG--TTGCCC
* * * * * *
8002444 GGGGAGATAGAATTA-TCGGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAAAATCCGCCATCT
62 AGGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCT
*
8002508 TCGAG
126 TCGAC
* * * *** * * ** * * *****
8002513 CTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATAC
1 CTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG--TTGCCC
** * *
8002578 AGGGAGATAGAGTTA-TCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
62 AGGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCT
* *
8002642 TTGAT
126 TCGAC
* * * *** * * ** * * *****
8002647 CTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATAC
1 CTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG--TTGCCC
* * *
8002712 AGGGAGATAGAATTA-TCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
62 AGGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCT
8002776 TCGA
126 TCGA
8002780 TCTTTTTCGC
Statistics
Matches: 1890, Mismatches: 102, Indels: 24
0.94 0.05 0.01
Matches are distributed among these distances:
129 1 0.00
130 68 0.04
131 4 0.00
132 81 0.04
133 5 0.00
134 1693 0.90
136 38 0.02
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.26
Consensus pattern (130 bp):
CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTGTTGCCCAGGG
AGATAGAACTACTGGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCTTCGAC
Found at i:8001153 original size:134 final size:134
Alignment explanation
Indices: 8000967--8002845 Score: 3429
Period size: 134 Copynumber: 14.0 Consensus size: 134
8000957 CACTGTTGCC
* ** *
8000967 CAGGAAGATAGAACTATCGGCTTCAATGTACTCCACTGTAGTCACAGAGAGGTAAAATCTGCCAT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGT--CAGGGAGGTAAAATCTGCCAT
*
8001032 CTTCGATCTACTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGC
64 CTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGC
8001097 CAAATA
129 CAAATA
* * *
8001103 CAGGGAGATAGAGTTATCAGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAAAATCCGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
*
8001168 TCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
8001233 AATA
131 AATA
*
8001237 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAAAATCTGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
8001302 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
8001367 AATA
131 AATA
*
8001371 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
*
8001436 TCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
8001501 AATA
131 AATA
8001505 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
*
8001570 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCA
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
8001635 AATA
131 AATA
*
8001639 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
*
8001704 TCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
8001769 AATA
131 AATA
8001773 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
8001838 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
8001903 AATA
131 AATA
*
8001907 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
*
8001972 TCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
8002037 AATA
131 AATA
8002041 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
* *
8002106 TCGATCTGCTTCGCTGTCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCA
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
8002171 AATA
131 AATA
*
8002175 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
*
8002240 TCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
8002305 AATA
131 AATA
8002309 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
*
8002374 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCA
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
8002439 AATA
131 AATA
* * * *
8002443 CGGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAAAATCCGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
*
8002508 TCGAGCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
8002573 AATA
131 AATA
8002577 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
*
8002642 TTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
8002707 AATA
131 AATA
*
8002711 CAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
** *
8002776 TCGATCTTTTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCGATCTACTT-CAC-GCC
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTA-TTCCACTGCC
8002839 AAATA
130 AAATA
8002844 CA
1 CA
8002846 TGAAGATAAG
Statistics
Matches: 1689, Mismatches: 53, Indels: 5
0.97 0.03 0.00
Matches are distributed among these distances:
133 10 0.01
134 1639 0.97
135 2 0.00
136 38 0.02
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (134 bp):
CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
AATA
Found at i:8001308 original size:268 final size:268
Alignment explanation
Indices: 8000704--8002845 Score: 3640
Period size: 268 Copynumber: 8.0 Consensus size: 268
8000694 ACTGTTGCCT
** * * * *
8000704 AGGGAGATAGAACTACCAGCTTCAATGTACTCCACCGTAATCAGTGGGAGGTAAAATCTGCCATC
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCA--GGGAGGTAAAATCTGCCATC
* *
8000769 TTCGATCTGCTTCGCTGCCAAATACAGGAATGCAAGATCTGCAATCTTCACTCTATTCCACTG--
64 TTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC
***** ** * * *
8000832 TTGCCCAGGGAGATAGAACTA-CTGGCTTTAATGTACTCCACCGTAATCAGGGAGGTAAAATCCG
129 AAATACAGGGAGATAGAGTTATC-GGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCG
* * * * * ** * *
8000896 CCATCTTCGACCTGC-TC-C--ACTATTGCTTAGGGAGATAAGATCTGTAATCTTCGATCTATTC
193 CCATCTTCGACCTGCTTCGCTGCCAAATAC--AGGAAGGCAAGATCTGCAATCTTCAATCTATTC
*****
8000957 CACTG--TTGCCC
256 CACTGCCAAATAC
* ** *
8000968 AGGAAGATAGAACTATCGGCTTCAATGTACTCCACTGTAGTCACAGAGAGGTAAAATCTGCCATC
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGT--CAGGGAGGTAAAATCTGCCATC
*
8001033 TTCGATCTACTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC
64 TTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC
* *
8001098 AAATACAGGGAGATAGAGTTATCAGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAAAATCCGC
129 AAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGC
8001163 CATCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCAC
194 CATCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCAC
8001228 TGCCAAATAC
259 TGCCAAATAC
*
8001238 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAAAATCTGCCATCTT
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
8001303 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
66 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
8001368 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
131 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
8001433 TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
196 TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
8001498 CCAAATAC
261 CCAAATAC
8001506 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
*
8001571 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAA
66 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
8001636 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
131 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
8001701 TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
196 TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
8001766 CCAAATAC
261 CCAAATAC
8001774 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
8001839 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
66 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
8001904 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
131 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
8001969 TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
196 TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
8002034 CCAAATAC
261 CCAAATAC
8002042 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
* *
8002107 CGATCTGCTTCGCTGTCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAA
66 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
8002172 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
131 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
8002237 TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
196 TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
8002302 CCAAATAC
261 CCAAATAC
8002310 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
*
8002375 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAA
66 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
* * *
8002440 ATACGGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAAAATCCGCCA
131 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
*
8002505 TCTTCGAGCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
196 TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
8002570 CCAAATAC
261 CCAAATAC
8002578 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
*
8002643 TGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
66 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
* *
8002708 ATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCA
131 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
* ** *
8002773 TCTTCGATCTTTTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCGATCTACTT-CAC-
196 TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTA-TTCCACT
8002836 GCCAAATAC
260 GCCAAATAC
8002845 A
1 A
8002846 TGAAGATAAG
Statistics
Matches: 1804, Mismatches: 62, Indels: 21
0.96 0.03 0.01
Matches are distributed among these distances:
264 115 0.06
266 67 0.04
267 13 0.01
268 1564 0.87
269 2 0.00
270 43 0.02
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.26
Consensus pattern (268 bp):
AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
CCAAATAC
Found at i:8001483 original size:402 final size:402
Alignment explanation
Indices: 8000704--8002845 Score: 3550
Period size: 402 Copynumber: 5.3 Consensus size: 402
8000694 ACTGTTGCCT
** * * * *
8000704 AGGGAGATAGAACTACCAGCTTCAATGTACTCCACCGTAATCAGTGGGAGGTAAAATCTGCCATC
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCA--GGGAGGTAAAATCTGCCATC
* *
8000769 TTCGATCTGCTTCGCTGCCAAATACAGGAATGCAAGATCTGCAATCTTCACTCTATTCCACTG--
64 TTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC
***** ** * * *
8000832 TTGCCCAGGGAGATAGAACTA-CTGGCTTTAATGTACTCCACCGTAATCAGGGAGGTAAAATCCG
129 AAATACAGGGAGATAGAGTTATC-GGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCG
* * * * * ** * *
8000896 CCATCTTCGACCTGC-TC-C--ACTATTGCTTAGGGAGATAAGATCTGTAATCTTCGATCTATTC
193 CCATCTTCGACCTGCTTCGCTGCCAAATAC--AGGAAGGCAAGATCTGCAATCTTCAATCTATTC
***** * ** *
8000957 CACTG--TTGCCCAGGAAGATAGAACTATCGGCTTCAATGTACTCCACTGTAGTCACAGAGAGGT
256 CACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGT--CAGGGAGGT
*
8001020 AAAATCTGCCATCTTCGATCTACTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAAT
319 AAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAAT
8001085 CTATTCCACTGCCAAATAC
384 CTATTCCACTGCCAAATAC
* * *
8001104 AGGGAGATAGAGTTATCAGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAAAATCCGCCATCTT
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
*
8001169 CGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
66 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
* *
8001234 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAAAATCTGCCA
131 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
*
8001299 TCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
196 TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
*
8001364 CCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCC
261 CCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCT
*
8001429 GCCATCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCC
326 GCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCC
8001494 ACTGCCAAATAC
391 ACTGCCAAATAC
8001506 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
*
8001571 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAA
66 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
8001636 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
131 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
8001701 TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
196 TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
8001766 CCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCT
261 CCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCT
8001831 GCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCC
326 GCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCC
8001896 ACTGCCAAATAC
391 ACTGCCAAATAC
*
8001908 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCATCTT
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
*
8001973 CGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
66 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
*
8002038 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCA
131 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
* * *
8002103 TCTTCGATCTGCTTCGCTGTCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTG
196 TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
*
8002168 CCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCC
261 CCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCT
*
8002233 GCCATCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCC
326 GCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCC
8002298 ACTGCCAAATAC
391 ACTGCCAAATAC
8002310 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
*
8002375 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAA
66 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
* * *
8002440 ATACGGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAAAATCCGCCA
131 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
*
8002505 TCTTCGAGCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
196 TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
8002570 CCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCT
261 CCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCT
*
8002635 GCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCC
326 GCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCC
8002700 ACTGCCAAATAC
391 ACTGCCAAATAC
*
8002712 AGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
** *
8002777 CGATCTTTTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCGATCTACTT-CAC-GCCA
66 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTA-TTCCACTGCCA
8002840 AATACA
130 AATACA
8002846 TGAAGATAAG
Statistics
Matches: 1650, Mismatches: 82, Indels: 19
0.94 0.05 0.01
Matches are distributed among these distances:
398 78 0.05
400 102 0.06
401 12 0.01
402 1413 0.86
403 2 0.00
404 43 0.03
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.26
Consensus pattern (402 bp):
AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
CCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCT
GCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCC
ACTGCCAAATAC
Found at i:8001542 original size:45 final size:46
Alignment explanation
Indices: 8001078--8002748 Score: 302
Period size: 46 Copynumber: 37.4 Consensus size: 46
8001068 GATCTGCAAT
*
8001078 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGT-TATCAG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * * *** *
8001123 CTTCAATGTACTCCACTG--TAGT-CAAGGAGGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * * *
8001166 CTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCA-AGA-TCT-GCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATC-AG
* *
8001212 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGT-TATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * * ** *
8001257 CTTCAATGTACTCCACTG--TAGT-CAAGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * *
8001300 CTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCA-AGA-TCT-GCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATC-AG
* *
8001346 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGT-TATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * *** *
8001391 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * * *
8001434 CTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCA-AGA-TCT-GCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATC-AG
* *
8001480 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGT-TATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * ** *
8001525 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * * *
8001568 CTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCA-AGA-TCTGTAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATCAG
* *
8001614 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGT-TATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * *** *
8001659 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * * *
8001702 CTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCA-AGA-TCT-GCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATC-AG
* *
8001748 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGT-TATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * ** *
8001793 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * *
8001836 CTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCA-AGA-TCT-GCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATC-AG
* *
8001882 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGT-TATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * *** *
8001927 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * * *
8001970 CTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCA-AGA-TCT-GCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATC-AG
* *
8002016 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGT-TATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * ** *
8002061 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * * * *
8002104 CTTCGATCTGCTTCGCTGTCAAATACAGGAAGGCA-AGA-TCTGTAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATCAG
* *
8002150 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGT-TATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * *** *
8002195 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * * *
8002238 CTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCA-AGA-TCT-GCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATC-AG
* *
8002284 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGT-TATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * ** *
8002329 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * * *
8002372 CTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCA-AGA-TCTGTAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATCAG
* * * *
8002418 CTTCAATCTATTCCACTGCCAAATACGGGGAGATAGAAT-TATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * * *** *
8002463 CTTCAATGTACTCCACTG--TAGT-CAAGGAGGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * * *
8002506 CTTCGAGCTGCTTCGCTGCCAAATACAGGAAGGCA-AGA-TCT-GCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATC-AG
* *
8002552 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGT-TATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * ** *
8002597 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
** * * * * * *
8002640 CTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCA-AGA-TCT-GCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATC-AG
* * *
8002686 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAAT-TATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
*
8002731 CTTCAATGTACTCCACTG
1 CTTCAATCTACTCCACTG
8002749 TAGTCAGGGA
Statistics
Matches: 1099, Mismatches: 413, Indels: 228
0.63 0.24 0.13
Matches are distributed among these distances:
42 129 0.12
43 192 0.17
44 12 0.01
45 304 0.28
46 426 0.39
47 36 0.03
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (46 bp):
CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
Found at i:8003270 original size:44 final size:44
Alignment explanation
Indices: 8002795--8003423 Score: 558
Period size: 44 Copynumber: 14.3 Consensus size: 44
8002785 TTCGCTGCCA
* * * *
8002795 AATACAGGAAGGCAAGATCTGCAATCTTCGATCTACTTCACGCC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACC
* * * * * *
8002839 AAATACATGAAGATAAGATCTACTTTCTTCGATCTACTTCGCCACC
1 -AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACC
* * * * *
8002885 AGTATGGGAAGACAAGATCTGC-ATCGTCAATCCACTTC-CTACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACC
** * *
8002928 AATATAGGAAGACCGGATCTGCTACCTTCGATCTACTTCACGCC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACC
* * * * * *
8002972 AATACATGAAGACAAGATCTGCTTTCTGCAATCTACTTCACCACT
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCA-CACC
* *
8003017 AATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACC
* * * *
8003060 AATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACC
* * * *
8003104 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCTCCACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACC
* * *
8003149 AATATGGGAAGACAAGATCTG-TATCTTTGATCCACTTC-CTACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACC
* * * *
8003192 AATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACC
* * * * * * *
8003236 AATACATGAAGACAAGATTTGCTTTCTGCAATCTACTTCGCCACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACC
* **
8003281 AATATGGGAAGACAAGATCTGC-ATCTTCGATCCCCTTC-CTACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACC
* * * *
8003324 AATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCGCCACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACC
* * *
8003369 AATATGGGAAGACAAGATCTG-TATCTTTGATCCACTTC-CTACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACC
8003412 AATATAGGAAGA
1 AATATAGGAAGA
8003424 TAGGACCTAT
Statistics
Matches: 461, Mismatches: 105, Indels: 38
0.76 0.17 0.06
Matches are distributed among these distances:
42 5 0.01
43 99 0.21
44 217 0.47
45 136 0.30
46 4 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (44 bp):
AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACC
Found at i:8003406 original size:132 final size:132
Alignment explanation
Indices: 8002810--8003423 Score: 926
Period size: 132 Copynumber: 4.7 Consensus size: 132
8002800 AGGAAGGCAA
* * * *
8002810 GATCTGCAATCTTCGATCTACTTCACGCCAAATACATGAAGATAAGATCTACTTTCTTCGATCTA
1 GATCTGCTACCTTCGATCTACTTCACGCC-AATACATGAAGACAAGATCTGCTTTCTTCGATCTA
* * *
8002875 CTTCGCCACCAGTATGGGAAGACAAGATCTGCATCGTCAATCCACTTCCTACCAATATAGGAAGA
65 CTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGA
**
8002940 CCG
130 TAG
* *
8002943 GATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCAATCTAC
1 GATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTAC
* *
8003008 TTCACCACTAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGAT
66 TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGAT
8003073 AG
131 AG
8003075 GATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTAC
1 GATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTAC
* * *
8003140 TTCTCCACCAATATGGGAAGACAAGATCTGTATCTTTGATCCACTTCCTACCAATATAGGAAGAT
66 TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGAT
8003205 AG
131 AG
* * *
8003207 GATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATTTGCTTTCTGCAATCTAC
1 GATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTAC
*
8003272 TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCCCTTCCTACCAATATAGGAAGAT
66 TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGAT
8003337 AG
131 AG
* * *** * * *
8003339 GATCTGCTACCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTG-TATCTTTGATCCA
1 GATCTGCTACCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTA
* *
8003403 CTTC-CTACCAATATAGGAAGA
65 CTTCGCCACCAATATGGGAAGA
8003424 TAGGACCTAT
Statistics
Matches: 441, Mismatches: 39, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
131 15 0.03
132 379 0.86
133 47 0.11
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.28
Consensus pattern (132 bp):
GATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTAC
TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGAT
AG
Found at i:8004330 original size:7 final size:7
Alignment explanation
Indices: 8004314--8004363 Score: 52
Period size: 6 Copynumber: 7.4 Consensus size: 7
8004304 TGGCCTCTCC
8004314 TTTTTC-
1 TTTTTCT
8004320 TTTTTC-
1 TTTTTCT
8004326 TTTTT-T
1 TTTTTCT
*
8004332 ATTTTCT
1 TTTTTCT
8004339 TTTTTCAT
1 TTTTTC-T
*
8004347 TTTTTCA
1 TTTTTCT
8004354 TTTTTCT
1 TTTTTCT
8004361 TTT
1 TTT
8004364 CGTTTTTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
6 15 0.41
7 15 0.41
8 7 0.19
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTTCT
Found at i:8004370 original size:7 final size:6
Alignment explanation
Indices: 8004313--8004375 Score: 51
Period size: 6 Copynumber: 10.2 Consensus size: 6
8004303 TTGGCCTCTC
8004313 CTTTTT CTTTTT CTTTTT -TATTTT CTTTTTT CATTTTTT CATTTTT C-TTTT
1 CTTTTT CTTTTT CTTTTT CT-TTTT C-TTTTT C--TTTTT C-TTTTT CTTTTT
*
8004364 CGTTTT -TTTTT C
1 CTTTTT CTTTTT C
8004376 AAGTGAAGTA
Statistics
Matches: 49, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
5 10 0.20
6 20 0.41
7 11 0.22
8 8 0.16
ACGTcount: A:0.05, C:0.14, G:0.02, T:0.79
Consensus pattern (6 bp):
CTTTTT
Found at i:8004815 original size:11 final size:10
Alignment explanation
Indices: 8004784--8004836 Score: 52
Period size: 12 Copynumber: 4.8 Consensus size: 10
8004774 CCTGGTAGAG
8004784 TTTTTTTTGT
1 TTTTTTTTGT
8004794 TTTTGCTTTTGT
1 TTTT--TTTTGT
8004806 TTTTTATTTGGT
1 TTTTT-TTT-GT
*
8004818 TTTTATTTGT
1 TTTTTTTTGT
8004828 TCTTTTTTT
1 T-TTTTTTT
8004837 TTGGCCTCCA
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
10 8 0.22
11 12 0.33
12 16 0.44
ACGTcount: A:0.04, C:0.04, G:0.11, T:0.81
Consensus pattern (10 bp):
TTTTTTTTGT
Found at i:8006193 original size:61 final size:61
Alignment explanation
Indices: 8006072--8006253 Score: 294
Period size: 61 Copynumber: 3.0 Consensus size: 61
8006062 CTAAACTCGA
* * *
8006072 CGTACTTTTGGATTTTAGGAAATTTATCGTATGCAATGAAATGTAATGTTGATGCATGAACG
1 CGTA-TTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGCATGAACG
*
8006134 CGTATTTTTGGATTTTAGGAAATTTATTGTAT-TAATAAAATGTAATGTTAATGCATGAACG
1 CGTA-TTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGCATGAACG
*
8006195 CGTATTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGAATGAA
1 CGTATTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGCATGAA
8006254 GAGATACGTG
Statistics
Matches: 112, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
60 27 0.24
61 55 0.49
62 30 0.27
ACGTcount: A:0.34, C:0.05, G:0.20, T:0.41
Consensus pattern (61 bp):
CGTATTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGCATGAACG
Found at i:8010778 original size:130 final size:130
Alignment explanation
Indices: 8010445--8012576 Score: 700
Period size: 134 Copynumber: 16.0 Consensus size: 130
8010435 TGGATGTGAT
** *
8010445 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGCTCTTCACTCTATTCCACTGTTGCCTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTGTTGCCCAGGG
**
8010510 AGATAGAACTACCAGCTTCAATGTACTCCACCGTAATCAGTGGGAGGTAAAATCTGCCATCTTCG
66 AGATAGAACTACTGGCTTCAATGTACTCCACCGTAATCA--GGGAGGTAAAATCTGCCATCTTCG
*
8010575 AT
129 AC
* * * **** * *
8010577 CTGCTTCGCTGCCAAATACAGGA-ATGCAAGATCTGCAATCTTCACTCTATTCCACTGTTGCCCA
1 CTGCTCCACTACTGCTTA-GGGAGAT--AAGATCTGTAATCTTCACTCTATTCCACTGTTGCCCA
* *
8010641 GGGAGATAGAACTACTGGCTTTAATGTACTCCACCGTAATCAGGGAGGTAAAATCCGCCATCTTC
63 GGGAGATAGAACTACTGGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCTTC
8010706 GAC
128 GAC
*
8010709 CTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAATCTTCGA-TCTATTCCACTGTTGCCCAGG
1 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTC-ACTCTATTCCACTGTTGCCCAGG
* * * *
8010773 AAGATAGAACTA-TCGGCTTCAATGTACTCCACTGTAGTCACAGAGAGGTAAAATCTGCCATCTT
65 GAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAAT--CAGGGAGGTAAAATCTGCCATCTT
*
8010837 CGAT
127 CGAC
* * * * *** * * ** * * *****
8010841 CTACTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATAC
1 CTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG--TTGCCC
** * * * * *
8010906 AGGGAGATAGAGTTA-TCAGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAAAATCCGCCATCT
62 AGGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCT
8010970 TCGAC
126 TCGAC
* * * *** * * ** * * *****
8010975 CTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAATACA
1 CTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG-TTGCCCA
** * * *
8011040 GGGAGATAGAGTTA-TCGGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAAAATCTGCCATCTT
63 GGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCTT
*
8011104 CGAT
127 CGAC
* * * *** * * ** * * *****
8011108 CTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATAC
1 CTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG--TTGCCC
** * * *
8011173 AGGGAGATAGAGTTA-TCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCATCT
62 AGGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCT
8011237 TCGAC
126 TCGAC
* * * *** * * ** * * *****
8011242 CTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATAC
1 CTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG--TTGCCC
** * *
8011307 AGGGAGATAGAGTTA-TCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
62 AGGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCT
*
8011371 TCGAT
126 TCGAC
* * * *** * * ** * *****
8011376 CTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATAC
1 CTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG--TTGCCC
** * * *
8011441 AGGGAGATAGAGTTA-TCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCATCT
62 AGGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCT
8011505 TCGAC
126 TCGAC
* * * *** * * ** * * *****
8011510 CTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATAC
1 CTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG--TTGCCC
** * *
8011575 AGGGAGATAGAGTTA-TCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
62 AGGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCT
*
8011639 TCGAT
126 TCGAC
* * * *** * * ** * * *****
8011644 CTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATAC
1 CTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG--TTGCCC
** * * *
8011709 AGGGAGATAGAGTTA-TCGGCTTC-ATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCATCT
62 AGGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCT
8011772 TCGAC
126 TCGAC
* * * *** * * ** * * *****
8011777 CTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAATACA
1 CTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG-TTGCCCA
** * *
8011842 GGGAGATAGAGTTA-TCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
63 GGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCTT
*
8011906 CGAT
127 CGAC
* * * *** * * ** * *****
8011910 CTGCTTCGCTGTCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATAC
1 CTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG--TTGCCC
** * * *
8011975 AGGGAGATAGAGTTA-TCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGT-AAATCCGCCATCT
62 AGGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCT
8012038 TCGAC
126 TCGAC
* * * *** * * ** * * *****
8012043 CTGCTTCGCTGCCAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACA
1 CTGCTCCACTACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG--TTGCCCA
** * *
8012108 GGGAGATAGAGTTA-TCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
63 GGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCTT
*
8012172 CGAT
127 CGAC
* * * *** * * ** * *****
8012176 CTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATAC
1 CTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG--TTGCCC
* * * * * *
8012241 GGGGAGATAGAATTA-TCGGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAAAATCCGCCATCT
62 AGGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCT
*
8012305 TCGAG
126 TCGAC
* * * *** * * ** * * *****
8012310 CTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATAC
1 CTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG--TTGCCC
** * *
8012375 AGGGAGATAGAGTTA-TCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
62 AGGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCT
* *
8012439 TTGAT
126 TCGAC
* * * *** * * ** * * *****
8012444 CTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATAC
1 CTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTG--TTGCCC
* * *
8012509 AGGGAGATAGAATTA-TCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
62 AGGGAGATAGAACTACT-GGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCT
8012573 TCGA
126 TCGA
8012577 TCTTTTTCGC
Statistics
Matches: 1873, Mismatches: 109, Indels: 34
0.93 0.05 0.02
Matches are distributed among these distances:
129 1 0.00
130 68 0.04
131 4 0.00
132 211 0.11
133 384 0.21
134 1167 0.62
136 38 0.02
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.26
Consensus pattern (130 bp):
CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCACTCTATTCCACTGTTGCCCAGGG
AGATAGAACTACTGGCTTCAATGTACTCCACCGTAATCAGGGAGGTAAAATCTGCCATCTTCGAC
Found at i:8010955 original size:134 final size:134
Alignment explanation
Indices: 8010769--8012642 Score: 3384
Period size: 134 Copynumber: 14.0 Consensus size: 134
8010759 CACTGTTGCC
* ** *
8010769 CAGGAAGATAGAACTATCGGCTTCAATGTACTCCACTGTAGTCACAGAGAGGTAAAATCTGCCAT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGT--CAGGGAGGTAAAATCTGCCAT
*
8010834 CTTCGATCTACTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGC
64 CTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGC
8010899 CAAATA
129 CAAATA
* * *
8010905 CAGGGAGATAGAGTTATCAGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAAAATCCGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
*
8010970 TCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC-
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
8011034 AATA
131 AATA
*
8011038 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAAAATCTGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
8011103 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
8011168 AATA
131 AATA
*
8011172 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
*
8011237 TCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
8011302 AATA
131 AATA
8011306 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
*
8011371 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCA
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
8011436 AATA
131 AATA
*
8011440 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
*
8011505 TCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
8011570 AATA
131 AATA
8011574 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
8011639 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
8011704 AATA
131 AATA
*
8011708 CAGGGAGATAGAGTTATCGGCTTC-ATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
*
8011772 TCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC-
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
8011836 AATA
131 AATA
8011840 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
* *
8011905 TCGATCTGCTTCGCTGTCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCA
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
8011970 AATA
131 AATA
*
8011974 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGT-AAATCCGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
*
8012038 TCGACCTGCTTCGCTGCC-AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
8012102 AATA
131 AATA
8012106 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
*
8012171 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCA
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
8012236 AATA
131 AATA
* * * *
8012240 CGGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAAAATCCGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
*
8012305 TCGAGCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
8012370 AATA
131 AATA
8012374 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
*
8012439 TTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
8012504 AATA
131 AATA
*
8012508 CAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
1 CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
** *
8012573 TCGATCTTTTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCGATCTACTT-CAC-GCC
66 TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTA-TTCCACTGCC
8012636 AAATA
130 AAATA
8012641 CA
1 CA
8012643 TGAAGATAAG
Statistics
Matches: 1679, Mismatches: 53, Indels: 15
0.96 0.03 0.01
Matches are distributed among these distances:
132 128 0.08
133 399 0.24
134 1112 0.66
135 2 0.00
136 38 0.02
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.26
Consensus pattern (134 bp):
CAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCT
TCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCA
AATA
Found at i:8011343 original size:45 final size:46
Alignment explanation
Indices: 8010880--8012545 Score: 266
Period size: 46 Copynumber: 37.4 Consensus size: 46
8010870 GATCTGCAAT
*
8010880 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGT-TATCAG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * * *** *
8010925 CTTCAATGTACTCCACTG--TAGT-CAAGGAGGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * * *
8010968 CTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCA-AGA-TCT-GCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATC-AG
* *
8011014 CTTCAATCTATTCCACTGCC-AATACAGGGAGATAGAGT-TATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * * ** *
8011058 CTTCAATGTACTCCACTG--TAGT-CAAGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * *
8011101 CTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCA-AGA-TCT-GCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATC-AG
* *
8011147 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGT-TATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * *** *
8011192 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * * *
8011235 CTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCA-AGA-TCT-GCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATC-AG
* *
8011281 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGT-TATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * ** *
8011326 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * * *
8011369 CTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCA-AGA-TCTGTAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATCAG
* *
8011415 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGT-TATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * *** *
8011460 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * * *
8011503 CTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCA-AGA-TCT-GCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATC-AG
* *
8011549 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGT-TATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * ** *
8011594 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * *
8011637 CTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCA-AGA-TCT-GCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATC-AG
* *
8011683 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGT-TATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * *** *
8011728 CTTC-ATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * * *
8011770 CTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCA-AGA-TCT-GCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATC-AG
* *
8011816 CTTCAATCTATTCCACTGCC-AATACAGGGAGATAGAGT-TATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * ** *
8011860 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * * * *
8011903 CTTCGATCTGCTTCGCTGTCAAATACAGGAAGGCA-AGA-TCTGTAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATCAG
* *
8011949 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGT-TATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * *** *
8011994 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTA-AATCCGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * * *
8012036 CTTCGACCTGCTTCGCTGCC-AATACAGGAAGGCA-AGA-TCT-GCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATC-AG
* *
8012081 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGT-TATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * ** *
8012126 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * * *
8012169 CTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCA-AGA-TCTGTAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATCAG
* * * *
8012215 CTTCAATCTATTCCACTGCCAAATACGGGGAGATAGAAT-TATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * * *** *
8012260 CTTCAATGTACTCCACTG--TAGT-CAAGGAGGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * * *
8012303 CTTCGAGCTGCTTCGCTGCCAAATACAGGAAGGCA-AGA-TCT-GCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATC-AG
* *
8012349 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGT-TATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
* * * * * * ** *
8012394 CTTCAATGTACTCCACTG--TAGT-CAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
** * * * * * *
8012437 CTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCA-AGA-TCT-GCAAT
1 CTTCAATCTACTCCACTGCCAAATACAGGGA-G-ATAGAGTCTATC-AG
* * *
8012483 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAAT-TATCGG
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
*
8012528 CTTCAATGTACTCCACTG
1 CTTCAATCTACTCCACTG
8012546 TAGTCAGGGA
Statistics
Matches: 1095, Mismatches: 407, Indels: 238
0.63 0.23 0.14
Matches are distributed among these distances:
41 13 0.01
42 136 0.12
43 176 0.16
44 69 0.06
45 289 0.26
46 379 0.35
47 33 0.03
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (46 bp):
CTTCAATCTACTCCACTGCCAAATACAGGGAGATAGAGTCTATCAG
Found at i:8011456 original size:268 final size:268
Alignment explanation
Indices: 8010506--8012642 Score: 3595
Period size: 268 Copynumber: 8.0 Consensus size: 268
8010496 ACTGTTGCCT
** * * * *
8010506 AGGGAGATAGAACTACCAGCTTCAATGTACTCCACCGTAATCAGTGGGAGGTAAAATCTGCCATC
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCA--GGGAGGTAAAATCTGCCATC
* *
8010571 TTCGATCTGCTTCGCTGCCAAATACAGGAATGCAAGATCTGCAATCTTCACTCTATTCCACTG--
64 TTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC
***** ** * * *
8010634 TTGCCCAGGGAGATAGAACTA-CTGGCTTTAATGTACTCCACCGTAATCAGGGAGGTAAAATCCG
129 AAATACAGGGAGATAGAGTTATC-GGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCG
* * * * * ** * *
8010698 CCATCTTCGACCTGC-TC-C--ACTATTGCTTAGGGAGATAAGATCTGTAATCTTCGATCTATTC
193 CCATCTTCGACCTGCTTCGCTGCCAAATAC--AGGAAGGCAAGATCTGCAATCTTCAATCTATTC
*****
8010759 CACTG--TTGCCC
256 CACTGCCAAATAC
* ** *
8010770 AGGAAGATAGAACTATCGGCTTCAATGTACTCCACTGTAGTCACAGAGAGGTAAAATCTGCCATC
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGT--CAGGGAGGTAAAATCTGCCATC
*
8010835 TTCGATCTACTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC
64 TTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC
* *
8010900 AAATACAGGGAGATAGAGTTATCAGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAAAATCCGC
129 AAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGC
8010965 CATCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCAC
194 CATCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCAC
8011030 TGCC-AATAC
259 TGCCAAATAC
*
8011039 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAAAATCTGCCATCTT
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
8011104 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
66 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
8011169 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
131 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
8011234 TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
196 TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
8011299 CCAAATAC
261 CCAAATAC
8011307 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
*
8011372 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAA
66 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
8011437 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
131 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
8011502 TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
196 TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
8011567 CCAAATAC
261 CCAAATAC
8011575 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
8011640 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
66 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
8011705 ATACAGGGAGATAGAGTTATCGGCTTC-ATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
131 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
8011769 TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
196 TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
8011834 CC-AATAC
261 CCAAATAC
8011841 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
* *
8011906 CGATCTGCTTCGCTGTCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAA
66 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
8011971 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGT-AAATCCGCCA
131 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
8012035 TCTTCGACCTGCTTCGCTGCC-AATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
196 TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
8012099 CCAAATAC
261 CCAAATAC
8012107 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
*
8012172 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAA
66 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
* * *
8012237 ATACGGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAAAATCCGCCA
131 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
*
8012302 TCTTCGAGCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
196 TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
8012367 CCAAATAC
261 CCAAATAC
8012375 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
*
8012440 TGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
66 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
* *
8012505 ATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCA
131 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
* ** *
8012570 TCTTCGATCTTTTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCGATCTACTT-CAC-
196 TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTA-TTCCACT
8012633 GCCAAATAC
260 GCCAAATAC
8012642 A
1 A
8012643 TGAAGATAAG
Statistics
Matches: 1795, Mismatches: 61, Indels: 31
0.95 0.03 0.02
Matches are distributed among these distances:
264 115 0.06
265 45 0.03
266 443 0.25
267 389 0.22
268 758 0.42
269 41 0.02
270 4 0.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.26
Consensus pattern (268 bp):
AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCA
TCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
CCAAATAC
Found at i:8012295 original size:934 final size:938
Alignment explanation
Indices: 8010506--8012650 Score: 3521
Period size: 934 Copynumber: 2.3 Consensus size: 938
8010496 ACTGTTGCCT
** * * * *
8010506 AGGGAGATAGAACTACCAGCTTCAATGTACTCCACCGTAATCAGTGGGAGGTAAAATCTGCCATC
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCA--GGGAGGTAAAATCTGCCATC
* *
8010571 TTCGATCTGCTTCGCTGCCAAATACAGGAATGCAAGATCTGCAATCTTCACTCTATTCCACTG--
64 TTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC
***** * * * * *
8010634 TTGCCCAGGGAGATAGAACTA-CTGGCTTTAATGTACTCCACCGTAATCAGGGAGGTAAAATCCG
129 AAATACAGGGAGATAGAATTATC-GGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTG
* * * * * * ** *
8010698 CCATCTTCGACCTGC-TC-C--ACTATTGCTTAGGGAGATAAGATCTGTAATCTTCGATCTATTC
193 CCATCTTCGATCTGCTTCGCTGCCAAATAC--AGGAAGGCAAGATCTGCAATCTTCGATCTATTC
*****
8010759 CACTG--TTGCCCAGGAAGATAGAACTATCGGCTTCAATGTACTCCACTGTAGTCACAGAGAGGT
256 CACTGCCAAATACAGGAAGATAGAACTATCGGCTTCAATGTACTCCACTGTAGT-ACAGAGAGGT
* *
8010822 AAAATCTGCCATCTTCGATCTACTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAAT
320 AAAATCCGCCATCTTCGACCTACTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAAT
8010887 CTATTCCACTGCCAAATACAGGGAGATAGAGTTATCAGCTTCAATGTACTCCACTGTAGTCAAGG
385 CTATTCCACTGCCAAATACAGGGAGATAGAGTTATCAGCTTCAATGTACTCCACTGTAGTCAAGG
8010952 AGGTAAAATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTT
450 AGGTAAAATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTT
8011017 CAATCTATTCCACTGCCAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCA
515 CAATCTATTCCACTGCCAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCA
* *
8011082 AGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAAT
580 AGGAGGTAAAATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAAT
8011147 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTA
645 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTA
8011212 GTCAGGGAGGTAAAATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTG
710 GTCAGGGAGGTAAAATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTG
*
8011277 CAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCAC
775 CAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCAC
* * *
8011342 TGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGA
840 TGTAGTCAAGGAGGTAAAATCCGCCATCTTCGAGCTGCTTCGCTGCCAAATACAGGAAGGCAAGA
*
8011407 TCTGTAATCTTCAATCTATTCCACTGCCAAATAC
905 TCTGCAATCTTCAATCTATTCCACTGCCAAATAC
*
8011441 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCCGCCATCTT
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
*
8011506 CGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
66 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
*
8011571 ATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCA
131 ATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCA
*
8011636 TCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTG
196 TCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCGATCTATTCCACTG
* ** *
8011701 CCAAATACAGGGAGATAGAGTTATCGGCTTC-ATGTACTCCACTGTAGT-CAGGGAGGTAAAATC
261 CCAAATACAGGAAGATAGAACTATCGGCTTCAATGTACTCCACTGTAGTACAGAGAGGTAAAATC
*
8011764 CGCCATCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTC
326 CGCCATCTTCGACCTACTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTC
* *
8011829 CACTGCC-AATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAA
391 CACTGCCAAATACAGGGAGATAGAGTTATCAGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAA
* * * *
8011893 AATCTGCCATCTTCGATCTGCTTCGCTGTCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCT
456 AATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCT
*
8011958 ATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAG
521 ATTCCACTGCC-AATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAAGGAG
8012023 GT-AAATCCGCCATCTTCGACCTGCTTCGCTGCC-AATACAGGAAGGCAAGATCTGCAATCTTCA
585 GTAAAATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCA
8012086 ATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAG
650 ATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAG
* * *
8012151 GGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGTAATC
715 GGAGGTAAAATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATC
*
8012216 TTCAATCTATTCCACTGCCAAATACGGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAG
780 TTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAG
8012281 TCAAGGAGGTAAAATCCGCCATCTTCGAGCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGC
845 TCAAGGAGGTAAAATCCGCCATCTTCGAGCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGC
8012346 AATCTTCAATCTATTCCACTGCCAAATAC
910 AATCTTCAATCTATTCCACTGCCAAATAC
8012375 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
1 AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
*
8012440 TGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
66 CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
8012505 ATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCA
131 ATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCA
**
8012570 TCTTCGATCTTTTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCGATCTACTT-CAC-
196 TCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCGATCTA-TTCCACT
*
8012633 GCCAAATACATGAAGATA
260 GCCAAATACAGGAAGATA
8012651 AGATCTACTT
Statistics
Matches: 1129, Mismatches: 70, Indels: 24
0.92 0.06 0.02
Matches are distributed among these distances:
933 95 0.08
934 558 0.49
935 260 0.23
936 140 0.12
937 34 0.03
938 17 0.02
939 25 0.02
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.26
Consensus pattern (938 bp):
AGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTT
CGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA
ATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCA
TCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCGATCTATTCCACTG
CCAAATACAGGAAGATAGAACTATCGGCTTCAATGTACTCCACTGTAGTACAGAGAGGTAAAATC
CGCCATCTTCGACCTACTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTC
CACTGCCAAATACAGGGAGATAGAGTTATCAGCTTCAATGTACTCCACTGTAGTCAAGGAGGTAA
AATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCT
ATTCCACTGCCAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAAGGAGG
TAAAATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAA
TCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGG
GAGGTAAAATCCGCCATCTTCGACCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATCT
TCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTGTAGT
CAAGGAGGTAAAATCCGCCATCTTCGAGCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCA
ATCTTCAATCTATTCCACTGCCAAATAC
Found at i:8013067 original size:44 final size:44
Alignment explanation
Indices: 8012592--8013220 Score: 558
Period size: 44 Copynumber: 14.3 Consensus size: 44
8012582 TTCGCTGCCA
* * * *
8012592 AATACAGGAAGGCAAGATCTGCAATCTTCGATCTACTTCACGCC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACC
* * * * * *
8012636 AAATACATGAAGATAAGATCTACTTTCTTCGATCTACTTCGCCACC
1 -AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACC
* * * * *
8012682 AGTATGGGAAGACAAGATCTGC-ATCGTCAATCCACTTC-CTACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACC
** * *
8012725 AATATAGGAAGACCGGATCTGCTACCTTCGATCTACTTCACGCC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACC
* * * * * *
8012769 AATACATGAAGACAAGATCTGCTTTCTGCAATCTACTTCACCACT
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCA-CACC
* *
8012814 AATATGGGAAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACC
* * * *
8012857 AATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACC
* * * *
8012901 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCTCCACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACC
* * *
8012946 AATATGGGAAGACAAGATCTG-TATCTTTGATCCACTTC-CTACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACC
* * * *
8012989 AATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACC
* * * * * * *
8013033 AATACATGAAGACAAGATTTGCTTTCTGCAATCTACTTCGCCACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACC
* **
8013078 AATATGGGAAGACAAGATCTGC-ATCTTCGATCCCCTTC-CTACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACC
* * * *
8013121 AATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCGCCACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACC
* * *
8013166 AATATGGGAAGACAAGATCTG-TATCTTTGATCCACTTC-CTACC
1 AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACC
8013209 AATATAGGAAGA
1 AATATAGGAAGA
8013221 TAGGACCTAT
Statistics
Matches: 461, Mismatches: 105, Indels: 38
0.76 0.17 0.06
Matches are distributed among these distances:
42 5 0.01
43 99 0.21
44 217 0.47
45 136 0.30
46 4 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (44 bp):
AATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACC
Found at i:8013203 original size:132 final size:132
Alignment explanation
Indices: 8012607--8013220 Score: 926
Period size: 132 Copynumber: 4.7 Consensus size: 132
8012597 AGGAAGGCAA
* * * *
8012607 GATCTGCAATCTTCGATCTACTTCACGCCAAATACATGAAGATAAGATCTACTTTCTTCGATCTA
1 GATCTGCTACCTTCGATCTACTTCACGCC-AATACATGAAGACAAGATCTGCTTTCTTCGATCTA
* * *
8012672 CTTCGCCACCAGTATGGGAAGACAAGATCTGCATCGTCAATCCACTTCCTACCAATATAGGAAGA
65 CTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGA
**
8012737 CCG
130 TAG
* *
8012740 GATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCAATCTAC
1 GATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTAC
* *
8012805 TTCACCACTAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGAT
66 TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGAT
8012870 AG
131 AG
8012872 GATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTAC
1 GATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTAC
* * *
8012937 TTCTCCACCAATATGGGAAGACAAGATCTGTATCTTTGATCCACTTCCTACCAATATAGGAAGAT
66 TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGAT
8013002 AG
131 AG
* * *
8013004 GATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATTTGCTTTCTGCAATCTAC
1 GATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTAC
*
8013069 TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCCCTTCCTACCAATATAGGAAGAT
66 TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGAT
8013134 AG
131 AG
* * *** * * *
8013136 GATCTGCTACCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTG-TATCTTTGATCCA
1 GATCTGCTACCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTA
* *
8013200 CTTC-CTACCAATATAGGAAGA
65 CTTCGCCACCAATATGGGAAGA
8013221 TAGGACCTAT
Statistics
Matches: 441, Mismatches: 39, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
131 15 0.03
132 379 0.86
133 47 0.11
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.28
Consensus pattern (132 bp):
GATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTAC
TTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGAT
AG
Found at i:8014166 original size:7 final size:6
Alignment explanation
Indices: 8014109--8014172 Score: 53
Period size: 6 Copynumber: 10.2 Consensus size: 6
8014099 TTGGCCTCTC
8014109 CTTTTT CTTTTT CTTTTT -TATTTT CTTTTTT CATTTTTT CATTTTT C-TTTT
1 CTTTTT CTTTTT CTTTTT CT-TTTT C-TTTTT C--TTTTT C-TTTTT CTTTTT
8014160 CGTTTTT -TTTTT C
1 C-TTTTT CTTTTT C
8014173 AAGTGAAGTA
Statistics
Matches: 50, Mismatches: 1, Indels: 14
0.77 0.02 0.22
Matches are distributed among these distances:
5 11 0.22
6 16 0.32
7 15 0.30
8 8 0.16
ACGTcount: A:0.05, C:0.14, G:0.02, T:0.80
Consensus pattern (6 bp):
CTTTTT
Found at i:8014611 original size:11 final size:10
Alignment explanation
Indices: 8014580--8014632 Score: 52
Period size: 12 Copynumber: 4.8 Consensus size: 10
8014570 CCTGGTAGAG
8014580 TTTTTTTTGT
1 TTTTTTTTGT
8014590 TTTTGCTTTTGT
1 TTTT--TTTTGT
8014602 TTTTTATTTGGT
1 TTTTT-TTT-GT
*
8014614 TTTTATTTGT
1 TTTTTTTTGT
8014624 TCTTTTTTT
1 T-TTTTTTT
8014633 TGGCCTCCAC
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
10 8 0.22
11 12 0.33
12 16 0.44
ACGTcount: A:0.04, C:0.04, G:0.11, T:0.81
Consensus pattern (10 bp):
TTTTTTTTGT
Found at i:8015969 original size:62 final size:62
Alignment explanation
Indices: 8015865--8016048 Score: 314
Period size: 62 Copynumber: 3.0 Consensus size: 62
8015855 CTAAACTCGA
* * * *
8015865 CGTACTTTTGGATTTTAGGAAATTTATCGTATGCAATGAAATGTAATGTTGATGCATGAACG
1 CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGCATGAACG
*
8015927 CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATAAAATGTAATGTTAATGCATGAACG
1 CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGCATGAACG
*
8015989 CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGAATGAA
1 CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGCATGAA
8016049 GAGATACGTG
Statistics
Matches: 115, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 115 1.00
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.41
Consensus pattern (62 bp):
CGTATTTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGCATGAACG
Found at i:8020156 original size:4 final size:4
Alignment explanation
Indices: 8020140--8020289 Score: 105
Period size: 4 Copynumber: 37.0 Consensus size: 4
8020130 ACCTTTTCCT
* *
8020140 TTTC TTTC CTTC TTTC TTTC TTT- TTTC TTCTC TTTTC CTTC TCTTC -TTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT-TC -TTTC TTTC T-TTC TTTC
* * *
8020189 -TTC TTTC TTTC TTTT TTTC TCTTC -TCC TTTCCC TTTC TTTC CTTC -TT-
1 TTTC TTTC TTTC TTTC TTTC T-TTC TTTC TTT--C TTTC TTTC TTTC TTTC
* * * *
8020236 TTTC TTTC TTCCC TCTCC TTTC TTCC TTTC TTTC TCTC TTTC TTTC TTTC
1 TTTC TTTC TT-TC T-TTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
8020286 TTTC
1 TTTC
8020290 CCTCTCCTTC
Statistics
Matches: 118, Mismatches: 15, Indels: 26
0.74 0.09 0.16
Matches are distributed among these distances:
3 15 0.13
4 81 0.69
5 15 0.13
6 7 0.06
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (4 bp):
TTTC
Found at i:8020176 original size:29 final size:28
Alignment explanation
Indices: 8020140--8020284 Score: 92
Period size: 29 Copynumber: 5.2 Consensus size: 28
8020130 ACCTTTTCCT
*
8020140 TTTC-TTTCCTTCT-TTCTTTCTTTTTTC
1 TTTCTTTTCCTTCTCTTC-TTCTTCTTTC
8020167 TTCTCTTTTCCTTCTCTTCTTCTTCTTTC
1 TT-TCTTTTCCTTCTCTTCTTCTTCTTTC
* * **
8020196 TTTCTTTT-TTTCTCTTCTCCTT-TCCC
1 TTTCTTTTCCTTCTCTTCTTCTTCTTTC
*
8020222 TTTC-TTTCCTTCT-TT-TTCTTTCTTCCC
1 TTTCTTTTCCTTCTCTTCTTC-TTCTT-TC
* *
8020249 TCTCCTTT-CTTC-CTTTCTTTCTCTCTTTC
1 TTTCTTTTCCTTCTC-TTC-TTCT-TCTTTC
8020278 TTTCTTT
1 TTTCTTT
8020285 CTTTCCCTCT
Statistics
Matches: 93, Mismatches: 12, Indels: 24
0.72 0.09 0.19
Matches are distributed among these distances:
24 2 0.02
25 7 0.08
26 11 0.12
27 23 0.25
28 13 0.14
29 27 0.29
30 10 0.11
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (28 bp):
TTTCTTTTCCTTCTCTTCTTCTTCTTTC
Found at i:8020240 original size:44 final size:42
Alignment explanation
Indices: 8020134--8020245 Score: 128
Period size: 44 Copynumber: 2.7 Consensus size: 42
8020124 AAAATTACCT
*
8020134 TTTCCTTTTCTTTCCTTC--TTTCTTTC--TTTTTTCTTCTC
1 TTTCCCTTTCTTTCCTTCTTTTTCTTTCTTTTTTTTCTTCTC
*
8020172 TTTTCC-TTCTCTT-CTTCTTCTTTCTTTCTTTTTTTCTCTTCTCC
1 TTTCCCTTTCT-TTCCTTCTT-TTTCTTTCTTTTTTT-TCTTCT-C
8020216 TTTCCCTTTCTTTCCTTCTTTTTCTTTCTT
1 TTTCCCTTTCTTTCCTTCTTTTTCTTTCTT
8020246 CCCTCTCCTT
Statistics
Matches: 61, Mismatches: 3, Indels: 14
0.78 0.04 0.18
Matches are distributed among these distances:
37 8 0.13
38 6 0.10
40 8 0.13
42 5 0.08
43 6 0.10
44 18 0.30
45 10 0.16
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (42 bp):
TTTCCCTTTCTTTCCTTCTTTTTCTTTCTTTTTTTTCTTCTC
Found at i:8020265 original size:70 final size:73
Alignment explanation
Indices: 8020149--8020292 Score: 172
Period size: 70 Copynumber: 2.0 Consensus size: 73
8020139 TTTTCTTTCC
* * * * *
8020149 TTCTTTCTTTCTTTTTTCTTCTCTTTTCCTTCTCTTCTTCTTCTTTCTTTCTTTTTTTCTCTTC-
1 TTCTTTCCTTCTTTTTTCTTCTC-TTTCCCTCTCCTCTTCTTCTTTCTTTCTCTCTTTCT-TTCT
8020213 TCCTTTCCCT
64 TCCTTTCCCT
8020223 TTCTTTCCTTC-TTTTTCTT-TC-TTCCCTCTCCT-TTCTTCCTTTCTTTCTCTCTTTCTTTCTT
1 TTCTTTCCTTCTTTTTTCTTCTCTTTCCCTCTCCTCTTCTT-CTTTCTTTCTCTCTTTCTTTCTT
*
8020284 TCTTTCCCT
65 CCTTTCCCT
8020293 CTCCTTCTGC
Statistics
Matches: 62, Mismatches: 6, Indels: 8
0.82 0.08 0.11
Matches are distributed among these distances:
69 8 0.13
70 34 0.55
72 2 0.03
73 8 0.13
74 10 0.16
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (73 bp):
TTCTTTCCTTCTTTTTTCTTCTCTTTCCCTCTCCTCTTCTTCTTTCTTTCTCTCTTTCTTTCTTC
CTTTCCCT
Found at i:8020457 original size:26 final size:26
Alignment explanation
Indices: 8020428--8020499 Score: 117
Period size: 26 Copynumber: 2.7 Consensus size: 26
8020418 ACAGGTTTTT
8020428 TTTATATATTTTGGTAAATAAAAAAA
1 TTTATATATTTTGGTAAATAAAAAAA
8020454 TTTATATATTTTGGTAAATAAAAAAA
1 TTTATATATTTTGGTAAATAAAAAAA
* *
8020480 GTTATAATATTTTAGTAAAT
1 TTTAT-ATATTTTGGTAAAT
8020500 TTTTATTTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
26 30 0.70
27 13 0.30
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.44
Consensus pattern (26 bp):
TTTATATATTTTGGTAAATAAAAAAA
Found at i:8024166 original size:21 final size:21
Alignment explanation
Indices: 8024140--8024195 Score: 103
Period size: 21 Copynumber: 2.7 Consensus size: 21
8024130 AACAGCGGTG
*
8024140 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
8024161 GCGGTGAGATTAGATACTGTA
1 GCGGTGAGATTAGATACTGTA
8024182 GCGGTGAGATTAGA
1 GCGGTGAGATTAGA
8024196 AACAATGGTG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.27, C:0.09, G:0.36, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:8030270 original size:44 final size:44
Alignment explanation
Indices: 8030176--8030295 Score: 136
Period size: 44 Copynumber: 2.7 Consensus size: 44
8030166 TTGATGCGAT
* * * *
8030176 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGAT-TATGACTTCAATC
* *
8030221 C-GCTCCACTACAACTTCAGGGAGATAGGATTATCGACTTCAA-C
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATTAT-GACTTCAATC
* *
8030264 CTGCTCCACTGCAACCTGAGGGAGATAAGATT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATT
8030296 TGCTTCTTCA
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
43 5 0.08
44 57 0.90
45 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (44 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGATTATGACTTCAATC
Found at i:8030335 original size:44 final size:42
Alignment explanation
Indices: 8030264--8030430 Score: 127
Period size: 44 Copynumber: 3.8 Consensus size: 42
8030254 CGACTTCAAC
** * *
8030264 CTGCTCCACTGCAACCTGAGGGAGATAAGATTTGCTTCTTCAGT
1 CTGCTCCACTGTGACTTCAGGGAGATAAGA-TTG-TTCTTCAGT
* * *
8030308 CTGCCCCACTGTGACTTCAGGGGGATAAGACTTGTTTTCTCAGT
1 CTGCTCCACTGTGACTTCAGGGAGATAAGA-TTGTTCT-TCAGT
* * *** * *
8030352 CTGCTTCGCTACAACTTCAGGGAGATAGGATTGATTTCTTCTGT
1 CTGCTCCACTGTGACTTCAGGGAGATAAGATTG--TTCTTCAGT
* *
8030396 TTGCTCCACTGTGACTTCAGGGGGATAAGACTTGT
1 CTGCTCCACTGTGACTTCAGGGAGATAAGA-TTGT
8030431 AATTTCCAAC
Statistics
Matches: 93, Mismatches: 26, Indels: 9
0.73 0.20 0.07
Matches are distributed among these distances:
43 7 0.08
44 80 0.86
45 6 0.06
ACGTcount: A:0.20, C:0.23, G:0.25, T:0.32
Consensus pattern (42 bp):
CTGCTCCACTGTGACTTCAGGGAGATAAGATTGTTCTTCAGT
Found at i:8030356 original size:88 final size:88
Alignment explanation
Indices: 8030264--8030430 Score: 228
Period size: 88 Copynumber: 1.9 Consensus size: 88
8030254 CGACTTCAAC
* *
8030264 CTGCTCCACTGCAACCTGAGGGAGATAAGATTTG-CTTCTTCAGTCTGCCCCACTGTGACTTCAG
1 CTGCTCCACTACAACCTCAGGGAGATAAGA-TTGACTTCTTCAGTCTGCCCCACTGTGACTTCAG
8030328 GGGGATAAGACTTGTTTTCTCAGT
65 GGGGATAAGACTTGTTTTCTCAGT
* * * * * * * *
8030352 CTGCTTCGCTACAACTTCAGGGAGATAGGATTGATTTCTTCTGTTTGCTCCACTGTGACTTCAGG
1 CTGCTCCACTACAACCTCAGGGAGATAAGATTGACTTCTTCAGTCTGCCCCACTGTGACTTCAGG
8030417 GGGATAAGACTTGT
66 GGGATAAGACTTGT
8030431 AATTTCCAAC
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
87 3 0.04
88 65 0.96
ACGTcount: A:0.20, C:0.23, G:0.25, T:0.32
Consensus pattern (88 bp):
CTGCTCCACTACAACCTCAGGGAGATAAGATTGACTTCTTCAGTCTGCCCCACTGTGACTTCAGG
GGGATAAGACTTGTTTTCTCAGT
Found at i:8030707 original size:88 final size:88
Alignment explanation
Indices: 8030545--8031005 Score: 712
Period size: 88 Copynumber: 5.3 Consensus size: 88
8030535 GTTGGTGCTT
*
8030545 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCC-ACTGCAACCGGTGGAGGCAAGGCTTTGTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAACTGCAACCGATGGAGGCAAGGCTTTGTTT
*
8030609 TCGATATGCTTCGCTGTTAACGC
66 TCGATCTGCTTCGCTGTTAACGC
* ** *
8030632 AGGAAGGCAGGATCTTTTATCTTTAACCAGCTCCAACTGCAACCGATGGATGCAAGGCTTTGTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAACTGCAACCGATGGAGGCAAGGCTTTGTTT
8030697 TCGATCTGCTTCGCTGTTAACGC
66 TCGATCTGCTTCGCTGTTAACGC
* * *
8030720 AGGAAAGCAAGATCTGCTATCTTTAACCAGCTTCAACTACAACCGATGGAGGCAAGGCTTTGTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAACTGCAACCGATGGAGGCAAGGCTTTGTTT
*
8030785 TCGATCTGCTTCACTGTTAACGC
66 TCGATCTGCTTCGCTGTTAACGC
* *
8030808 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCC-ACTGCAACCAATGGAGGCAATGCTTTGTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAACTGCAACCGATGGAGGCAAGGCTTTGTTT
** * *
8030872 TTTATTTGTTTCGCTGTTAACGC
66 TCGATCTGCTTCGCTGTTAACGC
* * *
8030895 AGGAAGCCAAGATCTGCTATCTTTAACCAGCTCCAACTGTC-GCCGATGGAGGTAAGGCTTTGTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAACTG-CAACCGATGGAGGCAAGGCTTTGTT
*
8030959 TTCAATCTGCTTCGCTGTTAACGC
65 TTCGATCTGCTTCGCTGTTAACGC
8030983 AGGAAGGCAAGATCTGCTATCTT
1 AGGAAGGCAAGATCTGCTATCTT
8031006 CATTGATCTG
Statistics
Matches: 337, Mismatches: 34, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
87 109 0.32
88 227 0.67
89 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (88 bp):
AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAACTGCAACCGATGGAGGCAAGGCTTTGTTT
TCGATCTGCTTCGCTGTTAACGC
Found at i:8030816 original size:43 final size:43
Alignment explanation
Indices: 8030593--8030818 Score: 101
Period size: 43 Copynumber: 5.2 Consensus size: 43
8030583 CAACCGGTGG
* *
8030593 AGGCAAGGCTTTGTTTTCGATATGCTTCGCTGTTAACGCAGGA
1 AGGCAAGGCTTTGTTTTCGATCTGCTTCACTGTTAACGCAGGA
** * * * *
8030636 AGGC-AGGATCTTT-TATCTTTAACCAGCTCCAACTG-CAAC-CGATGG-
1 AGGCAAGG--CTTTGT-T-TTCGATCTGCTTC-ACTGTTAACGC-A-GGA
* *
8030681 ATGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
1 AGGCAAGGCTTTGTTTTCGATCTGCTTCACTGTTAACGCAGGA
* * * ** * * **
8030724 AAGCAA-GATCTGCTATCTTTAACCAGCTTCAACT-ACAAC-CGATGG-
1 AGGCAAGGCTTTG-T-T-TTCGATCTGCTTC-ACTGTTAACGC-A-GGA
8030769 AGGCAAGGCTTTGTTTTCGATCTGCTTCACTGTTAACGCAGGA
1 AGGCAAGGCTTTGTTTTCGATCTGCTTCACTGTTAACGCAGGA
8030812 AGGCAAG
1 AGGCAAG
8030819 ATCTGCTATC
Statistics
Matches: 126, Mismatches: 35, Indels: 44
0.61 0.17 0.21
Matches are distributed among these distances:
42 17 0.13
43 43 0.34
44 16 0.13
45 34 0.27
46 16 0.13
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (43 bp):
AGGCAAGGCTTTGTTTTCGATCTGCTTCACTGTTAACGCAGGA
Found at i:8030887 original size:175 final size:176
Alignment explanation
Indices: 8030545--8031005 Score: 687
Period size: 175 Copynumber: 2.6 Consensus size: 176
8030535 GTTGGTGCTT
* * * *
8030545 AGGAAGGCAAGATCTGCTATCTTTAACCAGC-TCCACTGCAACCGGTGGAGGCAAGGCTTTGTTT
1 AGGAAAGCAAGATCTGCTATCTTTAACCAGCTTCAACTACAACCGATGGAGGCAAGGCTTTGTTT
* * **
8030609 TCGATATGCTTCGCTGTTAACGCAGGAAGGCAGGATCTTTTATCTTTAACCAGCTCCAACTGCAA
66 TCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAACTGCAA
* *
8030674 CCGATGGATGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGC
131 CCAATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGC
8030720 AGGAAAGCAAGATCTGCTATCTTTAACCAGCTTCAACTACAACCGATGGAGGCAAGGCTTTGTTT
1 AGGAAAGCAAGATCTGCTATCTTTAACCAGCTTCAACTACAACCGATGGAGGCAAGGCTTTGTTT
*
8030785 TCGATCTGCTTCACTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCC-ACTGCAA
66 TCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAACTGCAA
* ** * *
8030849 CCAATGGAGGCAATGCTTTGTTTTTTATTTGTTTCGCTGTTAACGC
131 CCAATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGC
* * * *
8030895 AGG-AAGCCAAGATCTGCTATCTTTAACCAGCTCCAACTGTC-GCCGATGGAGGTAAGGCTTTGT
1 AGGAAAG-CAAGATCTGCTATCTTTAACCAGCTTCAACT-ACAACCGATGGAGGCAAGGCTTTGT
*
8030958 TTTCAATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTT
64 TTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTT
8031006 CATTGATCTG
Statistics
Matches: 261, Mismatches: 22, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
174 3 0.01
175 175 0.67
176 83 0.32
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (176 bp):
AGGAAAGCAAGATCTGCTATCTTTAACCAGCTTCAACTACAACCGATGGAGGCAAGGCTTTGTTT
TCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAACTGCAA
CCAATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGC
Found at i:8032665 original size:28 final size:28
Alignment explanation
Indices: 8032633--8032692 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
8032623 TCTTTTTCTC
8032633 TTTTCATATTTT-ATTTTGACTTTGATTT
1 TTTTC-TATTTTGATTTTGACTTTGATTT
* *
8032661 TTTTCTTTTTTGCTTTTGACTTTGATTT
1 TTTTCTATTTTGATTTTGACTTTGATTT
8032689 TTTT
1 TTTT
8032693 TTTGAATGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 5 0.17
28 24 0.83
ACGTcount: A:0.12, C:0.08, G:0.08, T:0.72
Consensus pattern (28 bp):
TTTTCTATTTTGATTTTGACTTTGATTT
Found at i:8037664 original size:27 final size:25
Alignment explanation
Indices: 8037634--8037699 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 25
8037624 GTATAAGATG
8037634 ATTTTAAAATAATTATTATATAAAACA
1 ATTTTAAAATAATTA-TATA-AAAACA
* *
8037661 ATTTGGAATAA-AACTATATAAAAACA
1 ATTT-TAA-AATAATTATATAAAAACA
8037687 ATTTTAAAATAAT
1 ATTTTAAAATAAT
8037700 ATGTAGTAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
24 2 0.06
25 4 0.12
26 10 0.31
27 8 0.25
28 6 0.19
29 2 0.06
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (25 bp):
ATTTTAAAATAATTATATAAAAACA
Found at i:8039339 original size:31 final size:31
Alignment explanation
Indices: 8039273--8039389 Score: 195
Period size: 30 Copynumber: 3.9 Consensus size: 31
8039263 GAATATAAAT
*
8039273 TATATTTTTTATTTTTAAAACACACTAC--A
1 TATATTTTTTATTTTTAAAATACACTACATA
8039302 TATATTTTTTATTTTTAAAATACACTACATA
1 TATATTTTTTATTTTTAAAATACACTACATA
8039333 TATA-TTTTTATTTTTAAAATACACTACATA
1 TATATTTTTTATTTTTAAAATACACTACATA
*
8039363 TATATTTTTTATTTTTAAAGTACACTA
1 TATATTTTTTATTTTTAAAATACACTA
8039390 ATACATGTAT
Statistics
Matches: 83, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
29 27 0.33
30 30 0.36
31 26 0.31
ACGTcount: A:0.38, C:0.10, G:0.01, T:0.51
Consensus pattern (31 bp):
TATATTTTTTATTTTTAAAATACACTACATA
Done.