Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 30 of 221
Found at i:8266553 original size:95 final size:95
Alignment explanation
Indices: 8266447--8266623 Score: 345
Period size: 95 Copynumber: 1.9 Consensus size: 95
8266437 TAATTTAATC
*
8266447 ATATTTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTGATAAAATTCTTAA
1 ATATTTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTGATAAAATTATTAA
8266512 TAATCAATATTCTTATAATTATTATTAAAT
66 TAATCAATATTCTTATAATTATTATTAAAT
8266542 ATATTTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTGATAAAATTATTAA
1 ATATTTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTGATAAAATTATTAA
8266607 TAATCAATATTCTTATA
66 TAATCAATATTCTTATA
8266624 TGAATTTACT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
95 81 1.00
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.48
Consensus pattern (95 bp):
ATATTTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTGATAAAATTATTAA
TAATCAATATTCTTATAATTATTATTAAAT
Found at i:8266556 original size:26 final size:26
Alignment explanation
Indices: 8266526--8266576 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
8266516 CAATATTCTT
8266526 ATAATTATTATTAAATATATTTTAAC
1 ATAATTATTATTAAATATATTTTAAC
8266552 ATAATTATTATTAAATATATTTTAA
1 ATAATTATTATTAAATATATTTTAA
8266577 TTAAAATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (26 bp):
ATAATTATTATTAAATATATTTTAAC
Found at i:8266704 original size:18 final size:17
Alignment explanation
Indices: 8266683--8266717 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8266673 TTATTATTAA
*
8266683 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
8266701 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
8266718 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:8266824 original size:18 final size:17
Alignment explanation
Indices: 8266801--8266837 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
8266791 AATTATTATT
8266801 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
8266817 AAATATATGATTTAATA
1 AAATATATGATTTAATA
8266834 AAAT
1 AAAT
8266838 TCTTAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:8266944 original size:18 final size:17
Alignment explanation
Indices: 8266921--8266957 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
8266911 AATTATTATT
8266921 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
8266937 AAATATATGATTTAATA
1 AAATATATGATTTAATA
8266954 AAAT
1 AAAT
8266958 TTAAAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:8266967 original size:120 final size:121
Alignment explanation
Indices: 8266538--8266958 Score: 748
Period size: 120 Copynumber: 3.5 Consensus size: 121
8266528 AATTATTATT
* *
8266538 AAATAT-ATTTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTGATAAAATT
1 AAATATAATTTGAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
*
8266602 ATTAATAATCAATATTCTTATATGAATTTACTAAAATC---ATATATGATACTATA
66 CTTAATAATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATA
8266655 AAATATAATTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
1 AAATATAATTTGAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
8266719 CTTAATAATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATA
66 CTTAATAATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATA
*
8266775 AAATATAATTTGAA-ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 AAATATAATTTGAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
8266839 CTTAATAATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATA
66 CTTAATAATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATA
*
8266895 AAATATAATTTGAA-ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 AAATATAATTTGAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
8266959 TAAAATAATT
Statistics
Matches: 296, Mismatches: 3, Indels: 7
0.97 0.01 0.02
Matches are distributed among these distances:
117 95 0.32
118 4 0.01
120 195 0.66
121 2 0.01
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.44
Consensus pattern (121 bp):
AAATATAATTTGAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
CTTAATAATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATA
Found at i:8267014 original size:101 final size:93
Alignment explanation
Indices: 8266898--8267179 Score: 340
Period size: 91 Copynumber: 3.0 Consensus size: 93
8266888 TACTATAAAA
* * *
8266898 TATAATTTGAAATAATTATTATTAAATATATTTTAATTAA-AATATATGATTTAATAAAATTTAA
1 TATAATTTAAAATAATTATTATTAAATATAATTTAA-TAATAATATATGATTTCATAAAATTT--
* *
8266962 AATAATTATTACTAATAAATTTTCTTATATGAATTTG
63 --T--CT-TGA-TAATAAATTTTCTTATATGAATTTG
*
8266999 TATAATTTAAAATAATAATTATTAAATATAATTTAATAATAATATATGATTTCATAAAA--TTCT
1 TATAATTTAAAATAATTATTATTAAATATAATTTAATAATAATATATGATTTCATAAAATTTTCT
8267062 TGATAATAAATTTTCTTATATGAATTTG
66 TGATAATAAATTTTCTTATATGAATTTG
* * * *
8267090 TGTAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAA--TTCT
1 TATAATTTAAAATAATTATTATTAAATATAATTTAATAATAATATATGATTTCATAAAATTTTCT
* *
8267153 TAATAATAAATATTCTTATATGAATTT
66 TGATAATAAATTTTCTTATATGAATTT
8267180 ACTAAAATCA
Statistics
Matches: 167, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
91 108 0.65
92 2 0.01
93 1 0.01
95 1 0.01
99 1 0.01
100 3 0.02
101 51 0.31
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (93 bp):
TATAATTTAAAATAATTATTATTAAATATAATTTAATAATAATATATGATTTCATAAAATTTTCT
TGATAATAAATTTTCTTATATGAATTTG
Found at i:8267018 original size:13 final size:13
Alignment explanation
Indices: 8267000--8267042 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
8266990 ATGAATTTGT
8267000 ATAATTTAAAATA
1 ATAATTTAAAATA
*
8267013 ATAATTATTAAAT-
1 ATAATT-TAAAATA
8267026 ATAATTTAATAATA
1 ATAATTTAA-AATA
8267040 ATA
1 ATA
8267043 TATGATTTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
12 2 0.08
13 15 0.60
14 8 0.32
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
ATAATTTAAAATA
Found at i:8267045 original size:54 final size:55
Alignment explanation
Indices: 8266896--8267047 Score: 162
Period size: 54 Copynumber: 2.9 Consensus size: 55
8266886 GATACTATAA
* *
8266896 AATATAATTTGAAATAATTATTATTAAATATATTTTAATTAA-AATATATG-ATTT
1 AATATAATTTAAAATAATTATTATTAAATATAATTTAA-TAATAATATATGAATTT
* * *
8266950 AATAAAATTTAAAATAATTATTACT-AATA-AATTT--T-CT--TATATGAATTT
1 AATATAATTTAAAATAATTATTATTAAATATAATTTAATAATAATATATGAATTT
* *
8266998 -GTATAATTTAAAATAATAATTATTAAATATAATTTAATAATAATATATGA
1 AATATAATTTAAAATAATTATTATTAAATATAATTTAATAATAATATATGA
8267048 TTTCATAAAA
Statistics
Matches: 79, Mismatches: 10, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
47 26 0.33
48 8 0.10
49 6 0.08
51 1 0.01
52 5 0.06
53 4 0.05
54 29 0.37
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.45
Consensus pattern (55 bp):
AATATAATTTAAAATAATTATTATTAAATATAATTTAATAATAATATATGAATTT
Found at i:8267072 original size:47 final size:47
Alignment explanation
Indices: 8267021--8267165 Score: 131
Period size: 47 Copynumber: 3.1 Consensus size: 47
8267011 TAATAATTAT
*
8267021 TAAATATAATTTAATAATAATATATGATTTCATAAAATTCTTGATAA
1 TAAATATAATTTAATAATAATATATGATTTCATAAAATTCTTAATAA
* * * * ** *
8267068 TAAAT-T--TTCTTAT-ATGAATTTGTGTAATT--TAAAATAATTAATAT
1 TAAATATAATT-TAATAAT-AATATATG-ATTTCATAAAATTCTTAATAA
* *
8267112 TAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAA
1 TAAATATAATTTAATAATAATATATGATTTCATAAAATTCTTAATAA
8267159 TAAATAT
1 TAAATAT
8267166 TCTTATATGA
Statistics
Matches: 72, Mismatches: 17, Indels: 18
0.67 0.16 0.17
Matches are distributed among these distances:
44 20 0.28
45 13 0.18
46 11 0.15
47 28 0.39
ACGTcount: A:0.48, C:0.03, G:0.04, T:0.45
Consensus pattern (47 bp):
TAAATATAATTTAATAATAATATATGATTTCATAAAATTCTTAATAA
Found at i:8267075 original size:91 final size:91
Alignment explanation
Indices: 8266965--8267179 Score: 351
Period size: 91 Copynumber: 2.4 Consensus size: 91
8266955 AATTTAAAAT
* *
8266965 AATTATTACTAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAA-TAATTATTAAATATA
1 AATTCTTAATAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTAA-TATTAAATATA
*
8267029 ATTTAATAATAATATATGATTTCATAA
65 ATTTAATAATAATATATAATTTCATAA
* *
8267056 AATTCTTGATAATAAATTTTCTTATATGAATTTGTGTAATTTAAAATAATTAATATTAAATATAA
1 AATTCTTAATAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTAATATTAAATATAA
*
8267121 TTTAATAATGATATATAATTTCATAA
66 TTTAATAATAATATATAATTTCATAA
*
8267147 AATTCTTAATAATAAATATTCTTATATGAATTT
1 AATTCTTAATAATAAATTTTCTTATATGAATTT
8267180 ACTAAAATCA
Statistics
Matches: 115, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
91 112 0.97
92 3 0.03
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.47
Consensus pattern (91 bp):
AATTCTTAATAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTAATATTAAATATAA
TTTAATAATAATATATAATTTCATAA
Found at i:8267140 original size:44 final size:43
Alignment explanation
Indices: 8266999--8267141 Score: 103
Period size: 44 Copynumber: 3.2 Consensus size: 43
8266989 TATGAATTTG
8266999 TATAATTTAAAATAA-TAATTATTAAATATAATTTAATAATAATA
1 TATAATTTAAAATAATTAA-TATTAAATATAATTTAATAAT-ATA
* ** * * * * *
8267043 TATGATTTCATAAAATTCTTGATAATAAAT-T-TTCTTATATGAATTTG
1 TAT-AATT--TAAAATAATTAATATTAAATATAAT-TTA-AT-AATATA
*
8267090 TGTAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
8267134 TATAATTT
1 TATAATTT
8267142 CATAAAATTC
Statistics
Matches: 71, Mismatches: 18, Indels: 20
0.65 0.17 0.18
Matches are distributed among these distances:
43 3 0.04
44 29 0.41
45 8 0.11
46 8 0.11
47 18 0.25
48 5 0.07
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (43 bp):
TATAATTTAAAATAATTAATATTAAATATAATTTAATAATATA
Found at i:8270440 original size:100 final size:100
Alignment explanation
Indices: 8270317--8270544 Score: 456
Period size: 100 Copynumber: 2.3 Consensus size: 100
8270307 ACATTAACAT
8270317 TAACAATGAATATTTGTTTTTTAATCAACAATGTTACAAATTTAACATTAACAAACCACATTTTT
1 TAACAATGAATATTTGTTTTTTAATCAACAATGTTACAAATTTAACATTAACAAACCACATTTTT
8270382 CTTTAAACAATTTTTAAAAGCACTTTCAATCATAA
66 CTTTAAACAATTTTTAAAAGCACTTTCAATCATAA
8270417 TAACAATGAATATTTGTTTTTTAATCAACAATGTTACAAATTTAACATTAACAAACCACATTTTT
1 TAACAATGAATATTTGTTTTTTAATCAACAATGTTACAAATTTAACATTAACAAACCACATTTTT
8270482 CTTTAAACAATTTTTAAAAGCACTTTCAATCATAA
66 CTTTAAACAATTTTTAAAAGCACTTTCAATCATAA
8270517 TAACAATGAATATTTGTTTTTTAATCAA
1 TAACAATGAATATTTGTTTTTTAATCAA
8270545 GTTGTTTACT
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
100 128 1.00
ACGTcount: A:0.42, C:0.14, G:0.04, T:0.40
Consensus pattern (100 bp):
TAACAATGAATATTTGTTTTTTAATCAACAATGTTACAAATTTAACATTAACAAACCACATTTTT
CTTTAAACAATTTTTAAAAGCACTTTCAATCATAA
Found at i:8270470 original size:48 final size:48
Alignment explanation
Indices: 8270310--8270470 Score: 159
Period size: 48 Copynumber: 3.3 Consensus size: 48
8270300 AACTTTAACA
8270310 TTAACATTAACAATGAATATTTGTTTTTTAATCAACAATGTTACAAAT
1 TTAACATTAACAATGAATATTTGTTTTTTAATCAACAATGTTACAAAT
*** * * * *
8270358 TTAACATTAACAAACCACATTT-TTCTTT-A--AACAATTTTTAAAAGCACT
1 TTAACATTAACAATGAATATTTGTTTTTTAATCAACAA-TGTTACAA--A-T
8270406 TTCAATCATAATAACAATGAATATTTGTTTTTTAATCAACAATGTTACAAAT
1 TT-AA-CAT--TAACAATGAATATTTGTTTTTTAATCAACAATGTTACAAAT
8270458 TTAACATTAACAA
1 TTAACATTAACAA
8270471 ACCACATTTT
Statistics
Matches: 87, Mismatches: 14, Indels: 24
0.70 0.11 0.19
Matches are distributed among these distances:
44 5 0.06
45 6 0.07
46 1 0.01
47 6 0.07
48 27 0.31
49 2 0.02
50 6 0.07
51 2 0.02
52 14 0.16
53 6 0.07
54 1 0.01
55 6 0.07
56 5 0.06
ACGTcount: A:0.43, C:0.14, G:0.04, T:0.39
Consensus pattern (48 bp):
TTAACATTAACAATGAATATTTGTTTTTTAATCAACAATGTTACAAAT
Found at i:8272213 original size:33 final size:33
Alignment explanation
Indices: 8272171--8272237 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
8272161 TAAACCAAGA
8272171 AAGAAGTTGACCAATTACAACACACATATACTT
1 AAGAAGTTGACCAATTACAACACACATATACTT
8272204 AAGAAGTTGACCAATTACAACACACATATACTT
1 AAGAAGTTGACCAATTACAACACACATATACTT
8272237 A
1 A
8272238 CTCTTATTCG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.46, C:0.21, G:0.09, T:0.24
Consensus pattern (33 bp):
AAGAAGTTGACCAATTACAACACACATATACTT
Found at i:8282149 original size:40 final size:40
Alignment explanation
Indices: 8282092--8282174 Score: 114
Period size: 40 Copynumber: 2.1 Consensus size: 40
8282082 ATTCCACAGC
* *
8282092 ACTTCATTTATTCAGTATACATCCTCTGGTGT-CTAGTCAA
1 ACTTCATTTATTCAGTATACAACCTCTGGT-TCCAAGTCAA
* *
8282132 ACTTTATTTATTCAGTATACAACTTCTGGTTCCAAGTCAA
1 ACTTCATTTATTCAGTATACAACCTCTGGTTCCAAGTCAA
8282172 ACT
1 ACT
8282175 CGTGCTGAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.03
40 37 0.97
ACGTcount: A:0.28, C:0.22, G:0.11, T:0.40
Consensus pattern (40 bp):
ACTTCATTTATTCAGTATACAACCTCTGGTTCCAAGTCAA
Found at i:8289747 original size:65 final size:65
Alignment explanation
Indices: 8289632--8289761 Score: 206
Period size: 65 Copynumber: 2.0 Consensus size: 65
8289622 AAACATTATA
* * *
8289632 TCAAACATCTCCCATACAAAAATTCAGCGCTAGAAAAGTATCCCTGTGTACATAGAATTAAACAG
1 TCAAACATCTCCCATACAAAAATTCAGCGCTAGAAAAGCACCCCTATGTACATAGAATTAAACAG
* * *
8289697 TCAAACGTCTCCCATACTAAAATTCAGTGCTAGAAAAGCACCCCTATGTACATAGAATTAAACAG
1 TCAAACATCTCCCATACAAAAATTCAGCGCTAGAAAAGCACCCCTATGTACATAGAATTAAACAG
8289762 CTACCAACAG
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
65 59 1.00
ACGTcount: A:0.41, C:0.24, G:0.12, T:0.23
Consensus pattern (65 bp):
TCAAACATCTCCCATACAAAAATTCAGCGCTAGAAAAGCACCCCTATGTACATAGAATTAAACAG
Found at i:8296388 original size:6 final size:6
Alignment explanation
Indices: 8296373--8296402 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
8296363 TAATTATACA
8296373 TATATAT TATATT TATATT TATATT TATAT
1 TATAT-T TATATT TATATT TATATT TATAT
8296403 CACTAATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 18 0.78
7 5 0.22
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (6 bp):
TATATT
Found at i:8301140 original size:26 final size:24
Alignment explanation
Indices: 8301084--8301129 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
8301074 TAAATGTTGT
8301084 ATTAATTATTTTTATTAAAATAAGA
1 ATTAA-TATTTTTATTAAAATAAGA
*
8301109 TTTAATA-TTTTATTAAAATAA
1 ATTAATATTTTTATTAAAATAA
8301130 TATGAATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 14 0.70
24 2 0.10
25 4 0.20
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (24 bp):
ATTAATATTTTTATTAAAATAAGA
Found at i:8301143 original size:23 final size:23
Alignment explanation
Indices: 8301094--8301143 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
8301084 ATTAATTATT
* *
8301094 TTTATTAAAATAAGATTTAATAT
1 TTTATTAAAATAAGATTGAATAA
*
8301117 TTTATTAAAATAATA-TGAATTAA
1 TTTATTAAAATAAGATTGAA-TAA
8301140 TTTA
1 TTTA
8301144 AAATATTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 3 0.13
23 20 0.87
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (23 bp):
TTTATTAAAATAAGATTGAATAA
Found at i:8301278 original size:15 final size:16
Alignment explanation
Indices: 8301240--8301315 Score: 61
Period size: 16 Copynumber: 4.8 Consensus size: 16
8301230 TGAATAATAT
8301240 TAAATA-TATTTTTAAA
1 TAAATATTA-TTTTAAA
8301256 TAAATATTATTTTAAA
1 TAAATATTATTTTAAA
* * *
8301272 T-AATATTGTAATTAAT
1 TAAATATTAT-TTTAAA
*
8301288 TAAATTTTATTTT-AA
1 TAAATATTATTTTAAA
8301303 -AAATATTAATTTT
1 TAAATATT-ATTTT
8301316 TTTTCTTAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
14 6 0.12
15 13 0.27
16 21 0.44
17 8 0.17
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (16 bp):
TAAATATTATTTTAAA
Found at i:8303016 original size:22 final size:22
Alignment explanation
Indices: 8302988--8303039 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
8302978 TCGTTACACA
8302988 AATTTTTGAAGAAAACTTAGTT
1 AATTTTTGAAGAAAACTTAGTT
* ***
8303010 AATTTTT-TATTTAACTTAGTT
1 AATTTTTGAAGAAAACTTAGTT
8303031 AATTTTTGA
1 AATTTTTGA
8303040 TTTATTCGTT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.52
Consensus pattern (22 bp):
AATTTTTGAAGAAAACTTAGTT
Found at i:8303045 original size:25 final size:21
Alignment explanation
Indices: 8303001--8303043 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
8302991 TTTTGAAGAA
8303001 AACTTAGTTAATTTTTTATTT
1 AACTTAGTTAATTTTTTATTT
*
8303022 AACTTAGTTAATTTTTGATTT
1 AACTTAGTTAATTTTTTATTT
8303043 A
1 A
8303044 TTCGTTACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.05, G:0.07, T:0.58
Consensus pattern (21 bp):
AACTTAGTTAATTTTTTATTT
Found at i:8303820 original size:45 final size:45
Alignment explanation
Indices: 8303668--8303820 Score: 137
Period size: 45 Copynumber: 3.4 Consensus size: 45
8303658 CTGCCAATGA
* * * * * * *
8303668 CTGTGGATAGAAAACAAA-ATCCCGCAGATAGAATTTGCGTCTGG
1 CTGTGGATACACAACAAATATCTCGCAAATAGAATCTGCCTCTAG
* * * * * *
8303712 CTGTAGATGCACAAAAAAAATCTCGCAAATAAAATCTGTCTCTAG
1 CTGTGGATACACAACAAATATCTCGCAAATAGAATCTGCCTCTAG
* * * * *
8303757 CTGTGAAAACATAGCAAATATCTTGCAAATAGAATCTGCCTCTAG
1 CTGTGGATACACAACAAATATCTCGCAAATAGAATCTGCCTCTAG
8303802 CTGTGGATACACAACAAAT
1 CTGTGGATACACAACAAAT
8303821 TTGTAGATAA
Statistics
Matches: 81, Mismatches: 27, Indels: 1
0.74 0.25 0.01
Matches are distributed among these distances:
44 13 0.16
45 68 0.84
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.24
Consensus pattern (45 bp):
CTGTGGATACACAACAAATATCTCGCAAATAGAATCTGCCTCTAG
Found at i:8303922 original size:34 final size:33
Alignment explanation
Indices: 8303884--8303993 Score: 121
Period size: 34 Copynumber: 3.2 Consensus size: 33
8303874 GCAATGTGAC
*
8303884 ATGCTTATAGCAGATCAATTCGGTAGCAATTAAT
1 ATGCTTATAACAGATCAATT-GGTAGCAATTAAT
* * * *
8303918 ATGCTTATAACAAATCAATAAGATAACAATTAAT
1 ATGCTTATAACAGATCAAT-TGGTAGCAATTAAT
* * *
8303952 ATGTTTATAACAGTTCAATATGGTTGCAATTAAT
1 ATGCTTATAACAGATCAAT-TGGTAGCAATTAAT
8303986 ATGCTTAT
1 ATGCTTAT
8303994 CATAAATCAA
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
34 62 1.00
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (33 bp):
ATGCTTATAACAGATCAATTGGTAGCAATTAAT
Found at i:8304024 original size:68 final size:69
Alignment explanation
Indices: 8303875--8304025 Score: 157
Period size: 68 Copynumber: 2.2 Consensus size: 69
8303865 CTATGCAATG
* * *
8303875 CAATGTGACATGCTTATAGCAGATCAATTCGGTAGCAATTAATATGCTTATAACAAATCAATAAG
1 CAATGAGACATGTTTATAACAGATCAATTCGGTAGCAATTAATATGCTTATAACAAATCAATAAG
8303940 ATAA
66 ATAA
* * * * * * *
8303944 CAATTA-ATATGTTTATAACAGTTCAATAT-GGTTGCAATTAATATGCTTATCATAAATCAATTC
1 CAATGAGACATGTTTATAACAGATCAAT-TCGGTAGCAATTAATATGCTTATAACAAATCAA-TA
*
8304007 AG-TAG
64 AGATAA
8304012 CAA-GAGACATGTTT
1 CAATGAGACATGTTT
8304026 TATCATGCGT
Statistics
Matches: 66, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
67 1 0.02
68 57 0.86
69 8 0.12
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.33
Consensus pattern (69 bp):
CAATGAGACATGTTTATAACAGATCAATTCGGTAGCAATTAATATGCTTATAACAAATCAATAAG
ATAA
Found at i:8307516 original size:24 final size:22
Alignment explanation
Indices: 8307488--8307532 Score: 63
Period size: 24 Copynumber: 2.0 Consensus size: 22
8307478 AGATTATTCC
8307488 GCCCTTAAAATATTTTCACTATTG
1 GCCCTTAAAAT-TTTTCA-TATTG
*
8307512 GCCCTTCAAATTTTTCATATT
1 GCCCTTAAAATTTTTCATATT
8307533 TACACTTTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 4 0.20
23 6 0.30
24 10 0.50
ACGTcount: A:0.27, C:0.22, G:0.07, T:0.44
Consensus pattern (22 bp):
GCCCTTAAAATTTTTCATATTG
Found at i:8309291 original size:29 final size:30
Alignment explanation
Indices: 8309244--8309316 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 30
8309234 GCTTTGTGTG
*
8309244 AGCTCTCTATTTAGCTTTGCC-TAATTGCA
1 AGCTTTCTATTTAGCTTTGCCTTAATTGCA
* * **
8309273 AGTTTTCTATTTATCTTTGCCTTTTTTGCA
1 AGCTTTCTATTTAGCTTTGCCTTAATTGCA
8309303 AGCTTTCTATTTAG
1 AGCTTTCTATTTAG
8309317 TGAGCTCTTT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
29 18 0.50
30 18 0.50
ACGTcount: A:0.18, C:0.19, G:0.12, T:0.51
Consensus pattern (30 bp):
AGCTTTCTATTTAGCTTTGCCTTAATTGCA
Found at i:8309455 original size:41 final size:42
Alignment explanation
Indices: 8309383--8309461 Score: 133
Period size: 41 Copynumber: 1.9 Consensus size: 42
8309373 GTTAAGTCTT
*
8309383 ACTCTGTGTGTTCCTTTGAGAGCATGAGCTTTTGTGAGCCTC
1 ACTCTGTGTGCTCCTTTGAGAGCATGAGCTTTTGTGAGCCTC
*
8309425 ACTCTGTGTGCTCC-TTGAGAGCATGGGCTTTTGTGAG
1 ACTCTGTGTGCTCCTTTGAGAGCATGAGCTTTTGTGAG
8309462 ACTTGTGATG
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
41 22 0.63
42 13 0.37
ACGTcount: A:0.14, C:0.20, G:0.29, T:0.37
Consensus pattern (42 bp):
ACTCTGTGTGCTCCTTTGAGAGCATGAGCTTTTGTGAGCCTC
Found at i:8314674 original size:111 final size:111
Alignment explanation
Indices: 8314475--8314687 Score: 293
Period size: 111 Copynumber: 1.9 Consensus size: 111
8314465 TATTTCTCTA
* * * *
8314475 TATTCGGTAAGGTAAGATTTTAGAAAATTTCAGTATTAATTATTTTACCATATATATTTAGTGTT
1 TATTCGGTAAGGTAAGATTTTAAAAAATATAAGTATTAATTATTTCACCATATATATTTAGTGTT
** *
8314540 TATTTGGAAATATTTTTTAAAGATTTTTATAGTTATTATTTTCGTT
66 TATTTGGAAATATTTAATAAAGATATTTATAGTTATTATTTTCGTT
* * * *
8314586 TATTTGGTAAGGTGAGGTTTTAAAAAATATAAGTATTAATTATTTCACTATATATATTTGAGTGT
1 TATTCGGTAAGGTAAGATTTTAAAAAATATAAGTATTAATTATTTCACCATATATATTT-AGTGT
* *
8314651 TTATTTGGAAA-ATTTAATCAAGATATTTATTGTTATT
65 TTATTTGGAAATATTTAATAAAGATATTTATAGTTATT
8314688 TGTTTCTTAT
Statistics
Matches: 88, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
111 72 0.82
112 16 0.18
ACGTcount: A:0.33, C:0.04, G:0.14, T:0.49
Consensus pattern (111 bp):
TATTCGGTAAGGTAAGATTTTAAAAAATATAAGTATTAATTATTTCACCATATATATTTAGTGTT
TATTTGGAAATATTTAATAAAGATATTTATAGTTATTATTTTCGTT
Found at i:8320792 original size:31 final size:32
Alignment explanation
Indices: 8320753--8320846 Score: 95
Period size: 31 Copynumber: 3.0 Consensus size: 32
8320743 AATTAGTCAC
8320753 TAAGCCAAATAAAAACTAATTACATTTTCATT
1 TAAGCCAAATAAAAACTAATTACATTTTCATT
** * * * * *
8320785 TAA-CCAAAT-AAAGTTAGTCAAATTAGTCA-C
1 TAAGCCAAATAAAAACTAATTACATT-TTCATT
8320815 TAAGCCAAATAAAAACTAATTACATTTTCATT
1 TAAGCCAAATAAAAACTAATTACATTTTCATT
8320847 ACCATGGTGA
Statistics
Matches: 44, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
30 13 0.30
31 18 0.41
32 13 0.30
ACGTcount: A:0.47, C:0.16, G:0.05, T:0.32
Consensus pattern (32 bp):
TAAGCCAAATAAAAACTAATTACATTTTCATT
Found at i:8320827 original size:62 final size:62
Alignment explanation
Indices: 8320730--8320846 Score: 234
Period size: 62 Copynumber: 1.9 Consensus size: 62
8320720 GATTTATTTT
8320730 ATAAAGTTAGTCAAATTAGTCACTAAGCCAAATAAAAACTAATTACATTTTCATTTAACCAA
1 ATAAAGTTAGTCAAATTAGTCACTAAGCCAAATAAAAACTAATTACATTTTCATTTAACCAA
8320792 ATAAAGTTAGTCAAATTAGTCACTAAGCCAAATAAAAACTAATTACATTTTCATT
1 ATAAAGTTAGTCAAATTAGTCACTAAGCCAAATAAAAACTAATTACATTTTCATT
8320847 ACCATGGTGA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 55 1.00
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.32
Consensus pattern (62 bp):
ATAAAGTTAGTCAAATTAGTCACTAAGCCAAATAAAAACTAATTACATTTTCATTTAACCAA
Found at i:8321365 original size:2 final size:2
Alignment explanation
Indices: 8321358--8321382 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8321348 CCGCCATGAG
8321358 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
8321383 AGAGATCAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8337502 original size:10 final size:9
Alignment explanation
Indices: 8337478--8337519 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
8337468 AATTTGATTT
*
8337478 TTTTAAAGA
1 TTTTAAAAA
8337487 TTTTAAAAA
1 TTTTAAAAA
8337496 TTATTAAAAA
1 TT-TTAAAAA
8337506 -TTTAAAAA
1 TTTTAAAAA
8337514 GTTTTA
1 -TTTTA
8337520 CTATAAACCT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
8 7 0.24
9 11 0.38
10 11 0.38
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (9 bp):
TTTTAAAAA
Found at i:8340493 original size:37 final size:36
Alignment explanation
Indices: 8340450--8340545 Score: 111
Period size: 37 Copynumber: 2.6 Consensus size: 36
8340440 ATGCATGATT
*
8340450 AAGCATGCTATTAAGATTGTTAAACCGAAAGCATGAG
1 AAGCATGCCATTAA-ATTGTTAAACCGAAAGCATGAG
* * *
8340487 AAGCATGCCACTATAATTGTTAAGCCGAAAGCATGAT
1 AAGCATGCCATTA-AATTGTTAAACCGAAAGCATGAG
* *
8340524 AAACATGCCATTGATATTGTTA
1 AAGCATGCCATT-AAATTGTTA
8340546 CTATTATCGA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
37 48 0.96
38 2 0.04
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.27
Consensus pattern (36 bp):
AAGCATGCCATTAAATTGTTAAACCGAAAGCATGAG
Found at i:8346735 original size:7 final size:7
Alignment explanation
Indices: 8346709--8346792 Score: 86
Period size: 7 Copynumber: 12.3 Consensus size: 7
8346699 TGAAAGCTAA
*
8346709 GAGAGTT
1 GAGAGAT
8346716 GAGAGA-
1 GAGAGAT
8346722 GAG-GAT
1 GAGAGAT
8346728 GAGAGAT
1 GAGAGAT
8346735 GAGAGAT
1 GAGAGAT
8346742 GAGAGAT
1 GAGAGAT
8346749 GAGAGAT
1 GAGAGAT
8346756 GAGAGGGAT
1 GAGA--GAT
*
8346765 GAGGGAT
1 GAGAGAT
*
8346772 GAGGGAT
1 GAGAGAT
8346779 GA-AG-T
1 GAGAGAT
*
8346784 GAGAAAT
1 GAGAGAT
8346791 GA
1 GA
8346793 CCTCTTATTT
Statistics
Matches: 67, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
5 5 0.07
6 8 0.12
7 48 0.72
9 6 0.09
ACGTcount: A:0.39, C:0.00, G:0.46, T:0.14
Consensus pattern (7 bp):
GAGAGAT
Found at i:8346755 original size:21 final size:21
Alignment explanation
Indices: 8346709--8346792 Score: 86
Period size: 19 Copynumber: 4.1 Consensus size: 21
8346699 TGAAAGCTAA
*
8346709 GAGAGTTGAGAGA-GAG-GAT
1 GAGAGATGAGAGATGAGAGAT
8346728 GAGAGATGAGAGATGAGAGAT
1 GAGAGATGAGAGATGAGAGAT
*
8346749 GAGAGATGAGAGGGATGAGGGAT
1 GAGAGATGAGA--GATGAGAGAT
* *
8346772 GAGGGATGA-AG-TGAGAAAT
1 GAGAGATGAGAGATGAGAGAT
8346791 GA
1 GA
8346793 CCTCTTATTT
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
19 20 0.36
20 4 0.07
21 14 0.25
22 1 0.02
23 17 0.30
ACGTcount: A:0.39, C:0.00, G:0.46, T:0.14
Consensus pattern (21 bp):
GAGAGATGAGAGATGAGAGAT
Found at i:8350875 original size:14 final size:14
Alignment explanation
Indices: 8350856--8350882 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8350846 ATAAAATTTA
8350856 AAATTAAACTAAAT
1 AAATTAAACTAAAT
8350870 AAATTAAACTAAA
1 AAATTAAACTAAA
8350883 AAAAATATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (14 bp):
AAATTAAACTAAAT
Found at i:8358762 original size:35 final size:33
Alignment explanation
Indices: 8358706--8358771 Score: 105
Period size: 35 Copynumber: 1.9 Consensus size: 33
8358696 AAATATGTTC
8358706 AGTGTTTTAATCATTTTCTAAGTCTTGTTCTTA
1 AGTGTTTTAATCATTTTCTAAGTCTTGTTCTTA
*
8358739 AGTGTTTTTGATCATATTTCTAAGTCTTGTTCT
1 AGTG-TTTTAATCAT-TTTCTAAGTCTTGTTCT
8358772 GAAGAAATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 4 0.13
34 9 0.30
35 17 0.57
ACGTcount: A:0.20, C:0.12, G:0.14, T:0.55
Consensus pattern (33 bp):
AGTGTTTTAATCATTTTCTAAGTCTTGTTCTTA
Found at i:8360359 original size:41 final size:40
Alignment explanation
Indices: 8360225--8360359 Score: 173
Period size: 39 Copynumber: 3.4 Consensus size: 40
8360215 TAAAATGATA
* *
8360225 TTTTGCGGCATTTTTCTCATAGTGCCGTTAATGCTTGACC
1 TTTTGCGGCATTTTTCTCATAGTGTCGCTAATGCTTGACC
*
8360265 TTTT-CTGCATTTTTCTCATAGTGTCGCTAATGCTTGACC
1 TTTTGCGGCATTTTTCTCATAGTGTCGCTAATGCTTGACC
* * ** *
8360304 TTTTGTGGTATTTTTCTCATAAACGTCGCTACTGCTTGACC
1 TTTTGCGGCATTTTTCTCAT-AGTGTCGCTAATGCTTGACC
*
8360345 TTTTGCGGCGTTTTT
1 TTTTGCGGCATTTTT
8360360 TTGTTAGCGC
Statistics
Matches: 81, Mismatches: 12, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
39 36 0.44
40 16 0.20
41 29 0.36
ACGTcount: A:0.14, C:0.21, G:0.19, T:0.46
Consensus pattern (40 bp):
TTTTGCGGCATTTTTCTCATAGTGTCGCTAATGCTTGACC
Found at i:8366139 original size:23 final size:22
Alignment explanation
Indices: 8366096--8366153 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
8366086 AAAGGGTATC
* *
8366096 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
8366117 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
8366140 TGCATATCATATCT
1 TACAAATCATATCT
8366154 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:8366834 original size:131 final size:131
Alignment explanation
Indices: 8366630--8366952 Score: 479
Period size: 131 Copynumber: 2.5 Consensus size: 131
8366620 GAGATAAGGT
**
8366630 TGGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGACTCATCGTCTTTGATCTGCTCC
1 TGGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGA-TCGCCGTCTTTGATCTGCTCC
* *
8366695 ACTTCTGCTTAGGGAGACAAGATATACAATCTTTAACCTACTCCACTACTGCTC-AGAGAGATAG
65 ACTACTGCTTAGGGAGACAAGATATACAATCTTCAACCTACTCCACTACTGCTCAAG-GAGATAG
8366759 GAC
129 GAC
* * * * *
8366762 TGGTGGCTTAAATATGCTT-CCTACTATCTCAGGAATATAAGATTCGCCGTCTTCGATCTGCTCC
1 TGGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGA-TCGCCGTCTTTGATCTGCTCC
* *
8366826 ACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACTACTGCTCAAGGAGATAGG
65 ACTACTGCTTAGGGAGACAAGATATACAATCTTCAACCTACTCCACTACTGCTCAAGGAGATAGG
8366891 AC
130 AC
* *
8366893 TGGTGGCTTAAATCTGTTTCCCTACTACCTTGGGAAGATAAGATCTGCCGTCTTTGATCT
1 TGGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATC-GCCGTCTTTGATCT
8366953 ATTCCATTGC
Statistics
Matches: 169, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
131 117 0.69
132 52 0.31
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (131 bp):
TGGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATCGCCGTCTTTGATCTGCTCCA
CTACTGCTTAGGGAGACAAGATATACAATCTTCAACCTACTCCACTACTGCTCAAGGAGATAGGA
C
Found at i:8367475 original size:44 final size:44
Alignment explanation
Indices: 8367409--8367713 Score: 280
Period size: 44 Copynumber: 6.9 Consensus size: 44
8367399 AGACTTGAAA
* *
8367409 CTTTAATCTGCTCCACTACAACTTCAGGGAGATAGGATTATTGG
1 CTTTAATCTACTCCACTACAACTTCAGGGAGATAAGATTATTGG
* * * * *
8367453 CTTTAATCAACTTCACTGCAACTTTAGGGAGATAAGA-T-TTGCCAT
1 CTTTAATCTACTCCACTACAACTTCAGGGAGATAAGATTATTG---G
* * * *
8367498 CTTTATTCTGCCCCACTGCAACTTCAGAGG-GATAAGACTTACTT--
1 CTTTAATCTACTCCACTACAACTTCAG-GGAGATAAGA-TTA-TTGG
* * * * **
8367542 TTTTCAGTCTGCTCCACTACAACTTCAAGGAGATAAGATT-TGTAA
1 CTTT-AATCTACTCCACTACAACTTCAGGGAGATAAGATTAT-TGG
* * * *
8367587 CTTTAATCCACTCCACTGCAACTTTAGGGAGATAGGATTATTGG
1 CTTTAATCTACTCCACTACAACTTCAGGGAGATAAGATTATTGG
* *
8367631 CTTTAATCCACTCCACTACAACTTCAGGGAGATAGGATTATTGG
1 CTTTAATCTACTCCACTACAACTTCAGGGAGATAAGATTATTGG
*
8367675 CTTTAATCTACTCCACTACAACTTTAGGGAGATAAGATT
1 CTTTAATCTACTCCACTACAACTTCAGGGAGATAAGATT
8367714 CGCCATCTTA
Statistics
Matches: 214, Mismatches: 33, Indels: 28
0.78 0.12 0.10
Matches are distributed among these distances:
42 4 0.02
43 2 0.01
44 145 0.68
45 58 0.27
46 2 0.01
47 1 0.00
49 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (44 bp):
CTTTAATCTACTCCACTACAACTTCAGGGAGATAAGATTATTGG
Found at i:8367517 original size:45 final size:44
Alignment explanation
Indices: 8367409--8367749 Score: 201
Period size: 44 Copynumber: 7.6 Consensus size: 44
8367399 AGACTTGAAA
* * *
8367409 CTTTAATCTGCTCCACTACAACTTCAGGGAGATAGGATTATTG--G
1 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-T-TTGCAT
** * *
8367453 CTTTAATCAACTTCACTGCAACTTTAGGGAGATAAGATTTGCCAT
1 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-CAT
* * * * *
8367498 CTTTATTCTGCCCCACTGCAACTTCAGAGG-GATAAGACTTACTT
1 CTTTAATCTGCTCCACTGCAACTTCAG-GGAGATAAGATTTGCAT
* * * * * *
8367542 TTTTCAGTCTGCTCCACTACAACTTCAAGGAGATAAGATTTGTAA
1 CTTT-AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCAT
** * * *
8367587 CTTTAATCCACTCCACTGCAACTTTAGGGAGATAGGATTATTG--G
1 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-T-TTGCAT
** * * *
8367631 CTTTAATCCACTCCACTACAACTTCAGGGAGATAGGATTATTG--G
1 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-T-TTGCAT
* * * *
8367675 CTTTAATCTACTCCACTACAACTTTAGGGAGATAAGATTCGCCAT
1 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-CAT
***
8367720 CTTATTCAATCCATTCCACTGCAACTTCAG
1 C-T-TT-AATCTGCTCCACTGCAACTTCAG
8367750 TGGTATAGGA
Statistics
Matches: 237, Mismatches: 46, Indels: 24
0.77 0.15 0.08
Matches are distributed among these distances:
42 5 0.02
43 2 0.01
44 140 0.59
45 63 0.27
46 6 0.03
47 2 0.01
48 19 0.08
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (44 bp):
CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCAT
Found at i:8367520 original size:152 final size:152
Alignment explanation
Indices: 8367261--8367547 Score: 416
Period size: 152 Copynumber: 1.9 Consensus size: 152
8367251 TGGCCTCTTC
* * **
8367261 AATCCGCTCCATTATAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTACAACTTC
1 AATCCGCTCCACTACAACTTCAGGGAGATAGGATTATTGGCTTTAATCAACTCCACTACAACTTC
* *
8367326 AGAGGGATAAGATTTGCCATCTTCAGTCTACCCCACTTCAACTTCA-AGGGGATAAGACTTGCTT
66 AGAGGGATAAGATTTGCCATCTTCAGTCTACCCCACTGCAACTTCAGA-GGGATAAGACTTACTT
8367390 TCTTCAATAAGACTTGAAACTTT
130 TCTTCAATAAGACTTGAAACTTT
* * * *
8367413 AATCTGCTCCACTACAACTTCAGGGAGATAGGATTATTGGCTTTAATCAACTTCACTGCAACTTT
1 AATCCGCTCCACTACAACTTCAGGGAGATAGGATTATTGGCTTTAATCAACTCCACTACAACTTC
* * *
8367478 AG-GGAGATAAGATTTGCCATCTTTATTCTGCCCCACTGCAACTTCAGAGGGATAAGACTTACTT
66 AGAGG-GATAAGATTTGCCATCTTCAGTCTACCCCACTGCAACTTCAGAGGGATAAGACTTACTT
*
8367542 TTTTCA
130 TCTTCA
8367548 GTCTGCTCCA
Statistics
Matches: 119, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
151 2 0.02
152 116 0.97
153 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.32
Consensus pattern (152 bp):
AATCCGCTCCACTACAACTTCAGGGAGATAGGATTATTGGCTTTAATCAACTCCACTACAACTTC
AGAGGGATAAGATTTGCCATCTTCAGTCTACCCCACTGCAACTTCAGAGGGATAAGACTTACTTT
CTTCAATAAGACTTGAAACTTT
Found at i:8372364 original size:19 final size:19
Alignment explanation
Indices: 8372340--8372383 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
8372330 GTGGAAATCC
* *
8372340 AATGCATATG-ATGCAATG
1 AATGCAGATGCATGAAATG
8372358 TAATGCAGATGCATGAAATG
1 -AATGCAGATGCATGAAATG
8372378 AATGCA
1 AATGCA
8372384 AAAAGAAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.41, C:0.11, G:0.23, T:0.25
Consensus pattern (19 bp):
AATGCAGATGCATGAAATG
Found at i:8375021 original size:23 final size:22
Alignment explanation
Indices: 8374978--8375035 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
8374968 AAAGGGTATC
* *
8374978 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
8374999 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
8375022 TGCATATCATATCT
1 TACAAATCATATCT
8375036 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:8378785 original size:22 final size:22
Alignment explanation
Indices: 8378760--8378816 Score: 87
Period size: 22 Copynumber: 2.6 Consensus size: 22
8378750 AAGCGTGTTA
*
8378760 GGCACTAAGCCTGAATAACATC
1 GGCACTAAGCCTGAATAACACC
8378782 GGCACTAAGCCTGAATAACACC
1 GGCACTAAGCCTGAATAACACC
* *
8378804 AGTACTAAGCCTG
1 GGCACTAAGCCTG
8378817 CTAGGCACTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.35, C:0.28, G:0.19, T:0.18
Consensus pattern (22 bp):
GGCACTAAGCCTGAATAACACC
Found at i:8378834 original size:38 final size:38
Alignment explanation
Indices: 8378782--8378878 Score: 133
Period size: 38 Copynumber: 2.6 Consensus size: 38
8378772 GAATAACATC
* *
8378782 GGCACTAAGCCTGAATAACACC-AGTACTAAGCCTGCTA
1 GGCACTAAGCCTGAATAACACCGA-CACTAAGCATGCTA
* *
8378820 GGCACTAAGACTGAACAACACCGACACTAAGCATGCTA
1 GGCACTAAGCCTGAATAACACCGACACTAAGCATGCTA
*
8378858 AGCACTAAGCCTGAATAACAC
1 GGCACTAAGCCTGAATAACAC
8378879 TGTATAAATT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 50 0.98
39 1 0.02
ACGTcount: A:0.38, C:0.29, G:0.18, T:0.15
Consensus pattern (38 bp):
GGCACTAAGCCTGAATAACACCGACACTAAGCATGCTA
Found at i:8381384 original size:49 final size:49
Alignment explanation
Indices: 8381278--8381370 Score: 161
Period size: 49 Copynumber: 1.9 Consensus size: 49
8381268 CATGCTATGT
*
8381278 AATGC-TAAACTTAGTCTTCCACTATCTACACTCTTATCACTATTATAC
1 AATGCTTAAACTTAGTCTTCCACTATCTACACTCTTATCAATATTATAC
*
8381326 AATGCTTAAACTTGGTCTTCCACTATCTACACTCTTATCAATATT
1 AATGCTTAAACTTAGTCTTCCACTATCTACACTCTTATCAATATT
8381371 TATTCCCTCT
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
48 5 0.12
49 37 0.88
ACGTcount: A:0.30, C:0.26, G:0.05, T:0.39
Consensus pattern (49 bp):
AATGCTTAAACTTAGTCTTCCACTATCTACACTCTTATCAATATTATAC
Found at i:8384849 original size:23 final size:22
Alignment explanation
Indices: 8384812--8384866 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 22
8384802 TGTATAAACC
8384812 ATAAAAAATTGTCATGAAATAAAAT
1 ATAAAAAA-TGTCAT-AAA-AAAAT
*
8384837 ATAAAAAAT-TCATAAAAATAT
1 ATAAAAAATGTCATAAAAAAAT
*
8384858 ATATAAAAT
1 ATAAAAAAT
8384867 CTAAAAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 12 0.43
22 3 0.11
23 4 0.14
24 1 0.04
25 8 0.29
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.29
Consensus pattern (22 bp):
ATAAAAAATGTCATAAAAAAAT
Found at i:8384878 original size:20 final size:21
Alignment explanation
Indices: 8384832--8384896 Score: 68
Period size: 19 Copynumber: 3.2 Consensus size: 21
8384822 GTCATGAAAT
8384832 AAAATATA-A-AAAATTCATA
1 AAAATATATATAAAATTCATA
8384851 AAAATATATATAAAA-TC-TA
1 AAAATATATATAAAATTCATA
*
8384870 AAAATTATATATGGAAATT-ATA
1 AAAA-TATATAT-AAAATTCATA
8384892 AAAAT
1 AAAAT
8384897 GAAATGAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
19 14 0.36
20 10 0.26
21 8 0.21
22 7 0.18
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (21 bp):
AAAATATATATAAAATTCATA
Found at i:8384893 original size:22 final size:20
Alignment explanation
Indices: 8384842--8384896 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 20
8384832 AAAATATAAA
8384842 AAATTCATAAAAA-TATATAT
1 AAATT-ATAAAAATTATATAT
* *
8384862 AAAATCTAAAAATTATATAT
1 AAATTATAAAAATTATATAT
8384882 GGAAATTATAAAAAT
1 --AAATTATAAAAAT
8384897 GAAATGAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 6 0.21
20 11 0.39
22 11 0.39
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.33
Consensus pattern (20 bp):
AAATTATAAAAATTATATAT
Found at i:8385970 original size:31 final size:31
Alignment explanation
Indices: 8385935--8386032 Score: 87
Period size: 29 Copynumber: 3.3 Consensus size: 31
8385925 AAATGTTTAC
8385935 TAGTGATTAGTTTGTTATTTTTATAAAAGTT
1 TAGTGATTAGTTTGTTATTTTTATAAAAGTT
** *
8385966 TAGTGATTGAG-TTG-TAACTTT-TCAAAGTT
1 TAGTGATT-AGTTTGTTATTTTTATAAAAGTT
* ** * *
8385995 TAGT-TTTTTTTTGTTATTTTAACAAAAGTT
1 TAGTGATTAGTTTGTTATTTTTATAAAAGTT
8386025 TAGTGATT
1 TAGTGATT
8386033 TTTAGTGTAC
Statistics
Matches: 50, Mismatches: 12, Indels: 10
0.69 0.17 0.14
Matches are distributed among these distances:
28 5 0.10
29 15 0.30
30 15 0.30
31 13 0.26
32 2 0.04
ACGTcount: A:0.28, C:0.03, G:0.16, T:0.53
Consensus pattern (31 bp):
TAGTGATTAGTTTGTTATTTTTATAAAAGTT
Found at i:8387160 original size:34 final size:33
Alignment explanation
Indices: 8387063--8387166 Score: 117
Period size: 34 Copynumber: 3.1 Consensus size: 33
8387053 AGAAATTGTA
8387063 TTATACTTTTTTTTTGTCTTTGTAATAAATTAATG
1 TTATAC-TTTTTTTTGTC-TTGTAATAAATTAATG
*
8387098 TTA-A-TTTTGTTAAT-TCTAT-TAATAAATTAATG
1 TTATACTTTT-TT-TTGTCT-TGTAATAAATTAATG
8387130 TTATACTTTTTTTTGTCATTGTAATAAATTAATG
1 TTATACTTTTTTTTGTC-TTGTAATAAATTAATG
8387164 TTA
1 TTA
8387167 ATTCTATTAA
Statistics
Matches: 59, Mismatches: 2, Indels: 17
0.76 0.03 0.22
Matches are distributed among these distances:
32 22 0.37
33 11 0.19
34 23 0.39
35 3 0.05
ACGTcount: A:0.31, C:0.05, G:0.08, T:0.57
Consensus pattern (33 bp):
TTATACTTTTTTTTGTCTTGTAATAAATTAATG
Found at i:8387182 original size:12 final size:12
Alignment explanation
Indices: 8387165--8387189 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8387155 AAATTAATGT
8387165 TAATTCTATTAA
1 TAATTCTATTAA
8387177 TAATTCTATTAA
1 TAATTCTATTAA
8387189 T
1 T
8387190 TATTATTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (12 bp):
TAATTCTATTAA
Found at i:8388287 original size:12 final size:12
Alignment explanation
Indices: 8388252--8388290 Score: 55
Period size: 11 Copynumber: 3.4 Consensus size: 12
8388242 CTTATTTGGA
8388252 TTTATTTTAT-T
1 TTTATTTTATAT
*
8388263 TTTATTTT-CAT
1 TTTATTTTATAT
8388274 TTTATTTTATAT
1 TTTATTTTATAT
8388286 TTTAT
1 TTTAT
8388291 ATTAACAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 17 0.71
12 7 0.29
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTATTTTATAT
Found at i:8390125 original size:50 final size:50
Alignment explanation
Indices: 8390060--8390248 Score: 197
Period size: 51 Copynumber: 3.8 Consensus size: 50
8390050 AAAGTGAAAG
*
8390060 TGAT-GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAA
1 TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAA
* * *
8390109 TGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATA
1 TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-A
** * * * *
8390160 GTTTCTA--TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGCATCGG-A
1 --TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAA
* *
8390209 TGGTAATGGTCACATGTGTAGTACTATGTTCAGGCTACTA
1 TGAT-A-GGTCACATGTGTAGTACTATGTGCAGGCTACTA
8390249 TGTGAATCGA
Statistics
Matches: 114, Mismatches: 18, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 5 0.04
50 40 0.35
51 63 0.55
53 3 0.03
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (50 bp):
TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAA
Found at i:8390186 original size:101 final size:102
Alignment explanation
Indices: 8390066--8390250 Score: 293
Period size: 101 Copynumber: 1.8 Consensus size: 102
8390056 AAAGTGATGG
* * *
8390066 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAT-A-GGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGCACCGG-ATGATAATGGTCACATGTGTAGT
8390129 ACTATGTGCAGGCTACTATGCGTACCGGATAGTTTCTA
65 ACTATGTGCAGGCTACTATGCGTACCGGATAGTTTCTA
* *
8390167 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGCATCGGATGGTAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGCACCGGATGATAATGGTCACATGTGTAGTA
*
8390232 CTATGTTCAGGCTACTATG
66 CTATGTGCAGGCTACTATG
8390251 TGAATCGAAC
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
100 4 0.05
101 39 0.51
102 33 0.43
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.31
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGCACCGGATGATAATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTATGCGTACCGGATAGTTTCTA
Found at i:8393812 original size:26 final size:26
Alignment explanation
Indices: 8393782--8393848 Score: 93
Period size: 26 Copynumber: 2.6 Consensus size: 26
8393772 ACAACTCTTA
*
8393782 TGAGCGTCCCGA-TAAATGGCTCTTTG
1 TGAGCTTCCCGATTAAA-GGCTCTTTG
*
8393808 TGAGCTTCCTGATTAAAGGCTCTTTG
1 TGAGCTTCCCGATTAAAGGCTCTTTG
8393834 TGAGCTTCCC-ATTAA
1 TGAGCTTCCCGATTAA
8393849 TTTCTCTCTG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.14
26 28 0.76
27 4 0.11
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.34
Consensus pattern (26 bp):
TGAGCTTCCCGATTAAAGGCTCTTTG
Found at i:8393949 original size:24 final size:25
Alignment explanation
Indices: 8393896--8393951 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
8393886 TTCCTAATAT
* * *
8393896 ATGGCTATCCGGAGCTTCCCGATTA
1 ATGGCTCTTCGGAGCTACCCGATTA
8393921 ATGGCTCTTCGGAGCTACCC-ATTA
1 ATGGCTCTTCGGAGCTACCCGATTA
*
8393945 TTGGCTC
1 ATGGCTC
8393952 GCATGAGCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
24 10 0.37
25 17 0.63
ACGTcount: A:0.18, C:0.29, G:0.23, T:0.30
Consensus pattern (25 bp):
ATGGCTCTTCGGAGCTACCCGATTA
Found at i:8394008 original size:24 final size:25
Alignment explanation
Indices: 8393978--8394060 Score: 78
Period size: 25 Copynumber: 3.4 Consensus size: 25
8393968 TAAGGCTCTT
*
8393978 ATGAGCTTCCTGTTATATATCTCGA
1 ATGAGCTTCCTGTTATATAGCTCGA
* * * *
8394003 AT-AGCTTCCCGTTACATGGCTCGC
1 ATGAGCTTCCTGTTATATAGCTCGA
* * *
8394027 ATGAGCTTCATGTTATATGGTTCGA
1 ATGAGCTTCCTGTTATATAGCTCGA
*
8394052 AAGAGCTTC
1 ATGAGCTTC
8394061 ACATTAAGTG
Statistics
Matches: 46, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
24 19 0.41
25 27 0.59
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (25 bp):
ATGAGCTTCCTGTTATATAGCTCGA
Found at i:8394041 original size:25 final size:25
Alignment explanation
Indices: 8393942--8394060 Score: 93
Period size: 24 Copynumber: 4.9 Consensus size: 25
8393932 GAGCTACCCA
* *
8393942 TTAT-TGGCTCGCATGAGCTTCCTAA
1 TTATATGGCTCGAATGAGCTTCCT-G
**
8393967 TTA-A-GGCTCTTATGAGCTTCCTG
1 TTATATGGCTCGAATGAGCTTCCTG
** *
8393990 TTATATATCTCGAAT-AGCTTCCCG
1 TTATATGGCTCGAATGAGCTTCCTG
* * *
8394014 TTACATGGCTCGCATGAGCTTCATG
1 TTATATGGCTCGAATGAGCTTCCTG
* *
8394039 TTATATGGTTCGAAAGAGCTTC
1 TTATATGGCTCGAATGAGCTTC
8394061 ACATTAAGTG
Statistics
Matches: 72, Mismatches: 18, Indels: 8
0.73 0.18 0.08
Matches are distributed among these distances:
23 3 0.04
24 36 0.50
25 33 0.46
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (25 bp):
TTATATGGCTCGAATGAGCTTCCTG
Found at i:8398098 original size:54 final size:54
Alignment explanation
Indices: 8398024--8398161 Score: 267
Period size: 54 Copynumber: 2.6 Consensus size: 54
8398014 ATTGTCATTG
8398024 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
*
8398078 CAGGGGATTTAGCCAGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
8398132 CAGGGGATTTAGCCTGGACTGGTAATCCCG
1 CAGGGGATTTAGCCTGGACTGGTAATCCCG
8398162 CTGTAAGGAT
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 82 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (54 bp):
CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
Found at i:8401714 original size:24 final size:25
Alignment explanation
Indices: 8401687--8401733 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
8401677 TAGGACTTTA
8401687 ACTTTGAATTTGACTAGT-TTTAGG
1 ACTTTGAATTTGACTAGTGTTTAGG
*
8401711 ACTTTGACTTTGACTAGTGTTTA
1 ACTTTGAATTTGACTAGTGTTTA
8401734 TAAAATAGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.23, C:0.11, G:0.19, T:0.47
Consensus pattern (25 bp):
ACTTTGAATTTGACTAGTGTTTAGG
Found at i:8403102 original size:26 final size:26
Alignment explanation
Indices: 8403023--8403100 Score: 111
Period size: 26 Copynumber: 2.9 Consensus size: 26
8403013 TTGTTAAAAC
8403023 TCTTCTAAAAGAAAACTCAAGAGAAAT
1 TCTT-TAAAAGAAAACTCAAGAGAAAT
* *
8403050 TATTTAAAAGAAAACTTAAGAGAAAT
1 TCTTTAAAAGAAAACTCAAGAGAAAT
*
8403076 TCTTTAAAATAAAACTCAAAGAGAA
1 TCTTTAAAAGAAAACTC-AAGAGAA
8403101 TTTTATTAAC
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
26 35 0.78
27 10 0.22
ACGTcount: A:0.55, C:0.10, G:0.10, T:0.24
Consensus pattern (26 bp):
TCTTTAAAAGAAAACTCAAGAGAAAT
Found at i:8403109 original size:27 final size:26
Alignment explanation
Indices: 8403028--8403109 Score: 87
Period size: 26 Copynumber: 3.1 Consensus size: 26
8403018 AAAACTCTTC
*
8403028 TAAAAGAAAACTCAAGAGAA-ATTATT
1 TAAAAGAAAACTCAAGAGAATTTTA-T
* *
8403054 TAAAAGAAAACTTAAGAGAAATTCT-T
1 TAAAAGAAAACTCAAGAG-AATTTTAT
*
8403080 TAAAATAAAACTCAAAGAGAATTTTAT
1 TAAAAGAAAACTC-AAGAGAATTTTAT
8403107 TAA
1 TAA
8403110 CTCAAAGTGA
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
26 34 0.74
27 11 0.24
28 1 0.02
ACGTcount: A:0.56, C:0.07, G:0.10, T:0.27
Consensus pattern (26 bp):
TAAAAGAAAACTCAAGAGAATTTTAT
Found at i:8403832 original size:13 final size:13
Alignment explanation
Indices: 8403816--8403850 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
8403806 GGATTTTGTA
8403816 AAATATTTAATAT
1 AAATATTTAATAT
8403829 AAATATTTAATAT
1 AAATATTTAATAT
8403842 AAATATTTA
1 AAATATTTA
8403851 TGGAGATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AAATATTTAATAT
Found at i:8405627 original size:35 final size:34
Alignment explanation
Indices: 8405581--8405653 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 34
8405571 AATGATGTTA
* **
8405581 AATTGAATGTATTTATTATGTACATAGCCAAATTG
1 AATTGAATGTATGTA-TAACTACATAGCCAAATTG
* * *
8405616 AATTGTATGTATGTATAACTACATTGCCGAATTG
1 AATTGAATGTATGTATAACTACATAGCCAAATTG
8405650 AATT
1 AATT
8405654 TAGCATAGAA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
34 19 0.59
35 13 0.41
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.40
Consensus pattern (34 bp):
AATTGAATGTATGTATAACTACATAGCCAAATTG
Found at i:8405883 original size:44 final size:43
Alignment explanation
Indices: 8405770--8405978 Score: 178
Period size: 43 Copynumber: 4.9 Consensus size: 43
8405760 TCTGATATGT
*
8405770 GATTTCTTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGA
1 GATTTCATGTAAGACCACGTCTGGGACGTTGGCATCGATTTGA
**
8405813 GATTTCATGTAAGACCACGTCTGGGACGTTGGTGTCGATTTGA
1 GATTTCATGTAAGACCACGTCTGGGACGTTGGCATCGATTTGA
* * * * * * *
8405856 GGTTTACGTGTAAGAGCATGTTTGGGACATTGGCATC-ATAT-A
1 GATTT-CATGTAAGACCACGTCTGGGACGTTGGCATCGATTTGA
* * *
8405898 TGATTTCGTGTAAGACC-CTGCCTGGGACAG-TGGCATCAATAGTT--
1 -GATTTCATGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT--TTGA
* * *
8405942 GATTACATGTAAGACAACGTCTAGGACGTTGGCATCG
1 GATTTCATGTAAGACCACGTCTGGGACGTTGGCATCG
8405979 TACGAGCTTT
Statistics
Matches: 132, Mismatches: 25, Indels: 18
0.75 0.14 0.10
Matches are distributed among these distances:
42 26 0.20
43 80 0.61
44 25 0.19
45 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (43 bp):
GATTTCATGTAAGACCACGTCTGGGACGTTGGCATCGATTTGA
Found at i:8412663 original size:27 final size:27
Alignment explanation
Indices: 8412633--8412845 Score: 264
Period size: 27 Copynumber: 7.9 Consensus size: 27
8412623 GGTATAACAA
* *
8412633 TCATTTTACCCTATAGGGATATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
**
8412660 TCATTTTACCCTATGGGGGTATTTCTT
1 TCATTTTACCCTATGGGGGTATTTCGG
* * **
8412687 TCATTCTACCCTATAGGGGTATTTCAA
1 TCATTTTACCCTATGGGGGTATTTCGG
*
8412714 TTATTTTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
*
8412741 TCATTTTACACTATGGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
** *
8412768 TCATTTTACCCTATGAAGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCGG
* * * *
8412795 TTATTCTACCCTATGGGGTTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGG
*
8412822 TCATTTTACCCTATGGAGGTATTT
1 TCATTTTACCCTATGGGGGTATTT
8412846 TGATCATAAC
Statistics
Matches: 156, Mismatches: 30, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 156 1.00
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (27 bp):
TCATTTTACCCTATGGGGGTATTTCGG
Found at i:8412741 original size:81 final size:81
Alignment explanation
Indices: 8412630--8412845 Score: 299
Period size: 81 Copynumber: 2.7 Consensus size: 81
8412620 AAGGGTATAA
* * **
8412630 CAATCATTTTACCCTATAGGGATATTTCGGTCATTTTACCCTATGGGGGTATTTCTTTCATTCTA
1 CAATTATTTTACCCTATGGGGATATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCATTCTA
*
8412695 CCCTAT-AGGGGTATTT
66 CCCTATGA-AGGTATTT
* * *
8412711 CAATTATTTTACCCTATGGGGGTATTTCGGTCATTTTACACTATGGGGGTATTTCGGTCATTTTA
1 CAATTATTTTACCCTATGGGGATATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCATTCTA
8412776 CCCTATGAAGGTATTT
66 CCCTATGAAGGTATTT
* * * * *
8412792 CAGTTATTCTACCCTATGGGGTTATTTTGGTCATTTTACCCTATGGAGGTATTT
1 CAATTATTTTACCCTATGGGGATATTTCGGTCATTTTACCCTATGGGGGTATTT
8412846 TGATCATAAC
Statistics
Matches: 120, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
81 119 0.99
82 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.19, T:0.43
Consensus pattern (81 bp):
CAATTATTTTACCCTATGGGGATATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCATTCTA
CCCTATGAAGGTATTT
Found at i:8420660 original size:23 final size:24
Alignment explanation
Indices: 8420616--8420661 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
8420606 TTTCTCACAT
* **
8420616 TTTCAATTCAATCATTTTTCCACC
1 TTTCAATTCAATAATTAATCCACC
8420640 TTTCAA-TCAATAATTAATCCAC
1 TTTCAATTCAATAATTAATCCAC
8420662 AAACTCACAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.33, C:0.26, G:0.00, T:0.41
Consensus pattern (24 bp):
TTTCAATTCAATAATTAATCCACC
Found at i:8420815 original size:3 final size:3
Alignment explanation
Indices: 8420807--8420862 Score: 76
Period size: 3 Copynumber: 18.7 Consensus size: 3
8420797 TCACTCATCT
* * * *
8420807 TAA TAA TAA TAA TAA TAT TAA TAT TAA TAG TAA TAG TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8420855 TAA TAA TA
1 TAA TAA TA
8420863 CTTACCTCAC
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:8421637 original size:22 final size:24
Alignment explanation
Indices: 8421607--8421656 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
8421597 ATGTATTAGT
*
8421607 TAATAATAATAATAACAATATATTA
1 TAATAATCAT-ATAACAATATATTA
* *
8421632 TAATAATCATATAATAATATTTTA
1 TAATAATCATATAACAATATATTA
8421656 T
1 T
8421657 TCACAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (24 bp):
TAATAATCATATAACAATATATTA
Found at i:8423969 original size:9 final size:9
Alignment explanation
Indices: 8423955--8423982 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
8423945 AAACAAAGTC
8423955 AGTCAAAAA
1 AGTCAAAAA
8423964 AGTCAAAAA
1 AGTCAAAAA
8423973 AGTCAAAAA
1 AGTCAAAAA
8423982 A
1 A
8423983 TACGAAATCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.68, C:0.11, G:0.11, T:0.11
Consensus pattern (9 bp):
AGTCAAAAA
Found at i:8432122 original size:83 final size:82
Alignment explanation
Indices: 8432017--8432213 Score: 254
Period size: 82 Copynumber: 2.4 Consensus size: 82
8432007 ATCAATTTTA
** **
8432017 TTAAACGGC-AGAATTAAATCTCGAAACAAAATTATTTGA-TTAAGTCTTCGTTTGGAAACAAAA
1 TTAAACGGCGAGAA-TAAATCTCGAAAC-AAATTATTCAATTTAAGTC-TAATTTGGAAACAAAA
*
8432080 TCAAGATCAAATAAAATCTG
63 TCAAAATCAAATAAAATCTG
* *
8432100 TTAAACGGCGAGAATAAATCTCGAAACAGATTATTCAATTTAATTCTAATTTGGAAACAAAATCA
1 TTAAACGGCGAGAATAAATCTCGAAACAAATTATTCAATTTAAGTCTAATTTGGAAACAAAATCA
*
8432165 AAATCGAATAAAATCTG
66 AAATCAAATAAAATCTG
* * *
8432182 TTAAATGGCGAGAATAAATCCCGAAATAAATT
1 TTAAACGGCGAGAATAAATCTCGAAACAAATT
8432214 TTATTTCATT
Statistics
Matches: 100, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
82 68 0.68
83 28 0.28
84 4 0.04
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.28
Consensus pattern (82 bp):
TTAAACGGCGAGAATAAATCTCGAAACAAATTATTCAATTTAAGTCTAATTTGGAAACAAAATCA
AAATCAAATAAAATCTG
Found at i:8432328 original size:23 final size:23
Alignment explanation
Indices: 8432299--8432347 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 23
8432289 CCGAAGTAGA
8432299 TTTTATTTAA-TTTAATTACTCGT
1 TTTTATTTAATTTTAA-TACTCGT
8432322 TTTTATTTAATTTTAATACTCGT
1 TTTTATTTAATTTTAATACTCGT
8432345 TTT
1 TTT
8432348 AGAAATAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 20 0.80
24 5 0.20
ACGTcount: A:0.24, C:0.08, G:0.04, T:0.63
Consensus pattern (23 bp):
TTTTATTTAATTTTAATACTCGT
Found at i:8432355 original size:110 final size:108
Alignment explanation
Indices: 8432212--8432423 Score: 259
Period size: 110 Copynumber: 1.9 Consensus size: 108
8432202 CCGAAATAAA
* * * *
8432212 TTTTATTTCATTTTAATTTCTCTTTTGGCAATAAAATAAAAATTGGAATACAATA-TGTTAAATG
1 TTTTATTTAATTTTAATTACTCTTTTAGAAATAAAATAAAAATTGGAAT--AATACTGTTAAA-G
* **
8432276 GCGGGAAA-AAATCCCGAAGTAGATTTTATTTAATTTAATTACTCGT
63 GC-AGAAATAAATCCCGAAACAGATTTTATTTAATTTAATTACTCGT
* *
8432322 TTTTATTTAATTTTAA-TACTCGTTTTAGAAATAAAATCAAAATTGGAATAATACCTGTTGAAGG
1 TTTTATTTAATTTTAATTACTC-TTTTAGAAATAAAATAAAAATTGGAATAATA-CTGTTAAAGG
*
8432386 CAGAAATAAATCTCGAAACAGATTTTATTTAATTTAAT
64 CAGAAATAAATCCCGAAACAGATTTTATTTAATTTAAT
8432424 GTTCATTTTG
Statistics
Matches: 88, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
108 8 0.09
109 35 0.40
110 45 0.51
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.40
Consensus pattern (108 bp):
TTTTATTTAATTTTAATTACTCTTTTAGAAATAAAATAAAAATTGGAATAATACTGTTAAAGGCA
GAAATAAATCCCGAAACAGATTTTATTTAATTTAATTACTCGT
Found at i:8432458 original size:38 final size:39
Alignment explanation
Indices: 8432407--8432482 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
8432397 CTCGAAACAG
*
8432407 ATTTTATTTAA-TTTAAT-GTTCATTTTGGAAATAAAATA
1 ATTTTATTTAATTTTAATACTT-ATTTTGGAAATAAAATA
*
8432445 ATTTTATTTAATTTTAATACTTGTTTTGGAAATAAAAT
1 ATTTTATTTAATTTTAATACTTATTTTGGAAATAAAAT
8432483 TAAAATTGGA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
38 11 0.32
39 21 0.62
40 2 0.06
ACGTcount: A:0.38, C:0.03, G:0.08, T:0.51
Consensus pattern (39 bp):
ATTTTATTTAATTTTAATACTTATTTTGGAAATAAAATA
Found at i:8432465 original size:124 final size:126
Alignment explanation
Indices: 8432322--8432571 Score: 351
Period size: 124 Copynumber: 2.0 Consensus size: 126
8432312 AATTACTCGT
* * *
8432322 TTTTATTTAATTTTAATACTCGTTTTAGAAATAAAATCAAAATTGGAATAATACCTGTTGAA-GG
1 TTTTATTTAATTTTAATACTCGTTTTAGAAATAAAATCAAAATTGGAATAAAACATGTTAAACGG
* * **
8432386 CAGAAATAAATCTCGAAACAGATTTTATTTAATTT-AATGTTCATTTTGGAAATAAAATAA
66 CAGAAATAAATCACAAAACAGATTTTATTTAATTTAAATACTCATTTTGGAAATAAAATAA
* * * *
8432446 TTTTATTTAATTTTAATACTTGTTTTGGAAATAAAATTAAAATTGGAATAAAATATGTTAAACGG
1 TTTTATTTAATTTTAATACTCGTTTTAGAAATAAAATCAAAATTGGAATAAAACATGTTAAACGG
* ** *
8432511 TAGGGATAAATCACAAAATAGATTTTATTTAATTTAAATACTCATTTTGGAAATAAAATAA
66 CAGAAATAAATCACAAAACAGATTTTATTTAATTTAAATACTCATTTTGGAAATAAAATAA
8432572 AAAATGTAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
124 55 0.50
125 31 0.28
126 23 0.21
ACGTcount: A:0.43, C:0.06, G:0.11, T:0.39
Consensus pattern (126 bp):
TTTTATTTAATTTTAATACTCGTTTTAGAAATAAAATCAAAATTGGAATAAAACATGTTAAACGG
CAGAAATAAATCACAAAACAGATTTTATTTAATTTAAATACTCATTTTGGAAATAAAATAA
Found at i:8432539 original size:87 final size:86
Alignment explanation
Indices: 8432445--8432742 Score: 280
Period size: 87 Copynumber: 3.5 Consensus size: 86
8432435 AAATAAAATA
* * *
8432445 ATTTTATTTAATTTTAATACTTGTTTTGGAAATAAAATTAAAATTGGAATAAAATATGTTAAACG
1 ATTTTATTTAATTTTAATACTTATTTTGGAAATAAAATAAAAAATGGAATAAAAT-TGTTAAACG
* * *
8432510 GTAGGGATAAATCACAAAATAG
65 GTAGGAATAAATCTCAAAACAG
* * * * *
8432532 ATTTTATTTAATTTAAATACTCATTTTGGAAATAAAATAAAAAATGTAATAAAATTCATTGAACG
1 ATTTTATTTAATTTTAATACTTATTTTGGAAATAAAATAAAAAATGGAATAAAATT-GTTAAACG
**
8432597 GT-GAGAATAAATCTTGAAACAG
65 GTAG-GAATAAATCTCAAAACAG
* * * * * * * *
8432619 ATTTTATTT-ATCTCTAATTCTCA-TTTAGAAATAAAATCAGAAGTGGAATAAAATCCGTTAAAC
1 ATTTTATTTAAT-TTTAATACTTATTTTGGAAATAAAATAAAAAATGGAATAAAAT-TGTTAAAC
*
8432682 GGCAGGAATAAATCTCAAAACAG
64 GGTAGGAATAAATCTCAAAACAG
** ** *
8432705 ATTTTATTTAACATTAATTTTTATTTT-CAAATAAAATA
1 ATTTTATTTAATTTTAATACTTATTTTGGAAATAAAATA
8432743 CTTTTTCTTT
Statistics
Matches: 170, Mismatches: 34, Indels: 15
0.78 0.16 0.07
Matches are distributed among these distances:
86 78 0.46
87 92 0.54
ACGTcount: A:0.45, C:0.08, G:0.11, T:0.36
Consensus pattern (86 bp):
ATTTTATTTAATTTTAATACTTATTTTGGAAATAAAATAAAAAATGGAATAAAATTGTTAAACGG
TAGGAATAAATCTCAAAACAG
Found at i:8432723 original size:86 final size:84
Alignment explanation
Indices: 8432473--8432742 Score: 252
Period size: 86 Copynumber: 3.1 Consensus size: 84
8432463 ACTTGTTTTG
* * * * * *
8432473 GAAATAAAATTAAAATTGGAATAAAATATGTTAAACGGTAGGGATAAATCACAAAATAGATTTTA
1 GAAATAAAATAAAAAATGGAATAAAATACGTTAAACGG-AGGAATAAATCTCAAAACAGATTTTA
* * *
8432538 TTTAATTTAAATACTCATTTTG
65 TTTAACTT-AATTCTCA-TTTA
* * * * * **
8432560 GAAATAAAATAAAAAATGTAATAAAATTCATTGAACGGTGAGAATAAATCTTGAAACAGATTTTA
1 GAAATAAAATAAAAAATGGAATAAAATACGTTAAACGGAG-GAATAAATCTCAAAACAGATTTTA
*
8432625 TTTATCTCTAATTCTCATTTA
65 TTTAACT-TAATTCTCATTTA
* * * *
8432646 GAAATAAAATCAGAAGTGGAATAAAATCCGTTAAACGGCAGGAATAAATCTCAAAACAGATTTTA
1 GAAATAAAATAAAAAATGGAATAAAATACGTTAAACGG-AGGAATAAATCTCAAAACAGATTTTA
* * *
8432711 TTTAACATTAATTTTTATTTT
65 TTTAAC-TTAATTCTCATTTA
*
8432732 CAAATAAAATA
1 GAAATAAAATA
8432743 CTTTTTCTTT
Statistics
Matches: 146, Mismatches: 33, Indels: 9
0.78 0.18 0.05
Matches are distributed among these distances:
86 81 0.55
87 64 0.44
88 1 0.01
ACGTcount: A:0.47, C:0.09, G:0.11, T:0.33
Consensus pattern (84 bp):
GAAATAAAATAAAAAATGGAATAAAATACGTTAAACGGAGGAATAAATCTCAAAACAGATTTTAT
TTAACTTAATTCTCATTTA
Found at i:8432895 original size:14 final size:14
Alignment explanation
Indices: 8432876--8432914 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
8432866 AAATAGTTAT
8432876 TTATATAAAATAAA
1 TTATATAAAATAAA
*
8432890 TTATATATAATAAA
1 TTATATAAAATAAA
* *
8432904 ATAAATAAAAT
1 TTATATAAAAT
8432915 GTATTTAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
TTATATAAAATAAA
Found at i:8435956 original size:183 final size:184
Alignment explanation
Indices: 8435640--8435974 Score: 473
Period size: 183 Copynumber: 1.8 Consensus size: 184
8435630 AGAATTCAGA
* * *
8435640 ACACCCAATGGACAAACACTAAACCTGAGCCCCAAAAACATGCCCAGTTTTCTATGTTCCCTAGG
1 ACACCCAATAGACAAACACTAAACCTGAGCCCCAAAAACAAGCCCAGTTTTCTATGCTCCCTAGG
* * * *
8435705 TTTAAGCACATGGAAACACATCATCCCATTAACCCGATATTTTACCAAGCTCTTCCTCACGACCC
66 TTTAAGCACATGAAAACACATCACCCCATTAACCCAATATTTTACCAAACTCTTCCTCACGACCC
*
8435770 TACAAAAGTCA-TTCCTATACAAACATGCCACAGAAATTACCAAACTCTTCCTC
131 TACAAAACTCATTTCCTATACAAACATGCCACAGAAATTACCAAACTCTTCCTC
* *
8435823 ACACCCAATAGACAAGCACTAAA-CTCGAG-CCCAAAAACAAGCGCAGTTTTCTATGCTCCCTAG
1 ACACCCAATAGACAAACACTAAACCT-GAGCCCCAAAAACAAGCCCAGTTTTCTATGCTCCCTAG
* * * *
8435886 GTTTGAA-CACTTGAAATACACTTTACCCCATTAACCCAATATTTTACCAAATTCTTCCTCAC-A
65 GTTT-AAGCACATGAAA-ACACATCACCCCATTAACCCAATATTTTACCAAACTCTTCCTCACGA
8435949 CCCCTACAAAACTCATTTCCTATACA
128 -CCCTACAAAACTCATTTCCTATACA
8435975 GAGACCCCAT
Statistics
Matches: 133, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
182 45 0.34
183 78 0.59
184 10 0.08
ACGTcount: A:0.35, C:0.32, G:0.09, T:0.24
Consensus pattern (184 bp):
ACACCCAATAGACAAACACTAAACCTGAGCCCCAAAAACAAGCCCAGTTTTCTATGCTCCCTAGG
TTTAAGCACATGAAAACACATCACCCCATTAACCCAATATTTTACCAAACTCTTCCTCACGACCC
TACAAAACTCATTTCCTATACAAACATGCCACAGAAATTACCAAACTCTTCCTC
Found at i:8437844 original size:10 final size:10
Alignment explanation
Indices: 8437829--8437859 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
8437819 AACAATTTCT
8437829 AAATTTATCA
1 AAATTTATCA
8437839 AAATTTATCA
1 AAATTTATCA
*
8437849 AAATTTTTCA
1 AAATTTATCA
8437859 A
1 A
8437860 TTTATAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.42
Consensus pattern (10 bp):
AAATTTATCA
Found at i:8438115 original size:34 final size:35
Alignment explanation
Indices: 8438057--8438123 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
8438047 CAAACACCAG
8438057 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
8438092 AAAATATTTTCCCG-AAATCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA
8438124 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:8439268 original size:18 final size:17
Alignment explanation
Indices: 8439216--8439268 Score: 79
Period size: 18 Copynumber: 3.0 Consensus size: 17
8439206 TTATTATTAA
8439216 ATATAATTTAATAAAAAT
1 ATATAATTTAAT-AAAAT
8439234 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
*
8439251 ATATGAATTTACTAAAAT
1 ATAT-AATTTAATAAAAT
8439269 CATAATATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
17 9 0.27
18 24 0.73
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:8439428 original size:60 final size:59
Alignment explanation
Indices: 8439250--8439431 Score: 199
Period size: 60 Copynumber: 3.1 Consensus size: 59
8439240 TTTAATAAAA
*
8439250 TATATGAATTTACTAAAATCATAATATATAATGCTATAAAATATAATTGAAAATAATTAT
1 TATATGAATTTACTAAAATCATAATATATAAT-CTATAAAATATAATTTAAAATAATTAT
* * * ** * * * * *
8439310 TAT-TAAATATAATTTAATAAAAATATATAATTTGATAAAATTCTAGTATT-AAAT-ATTAT
1 TATATGAATTTACTAAAATCATAATATATAATCT-ATAAAA-TATAAT-TTAAAATAATTAT
8439369 TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTAT
1 TATATGAATTTACTAAAATCATAATATATAAT-CTATAAAATATAATTTAAAATAATTAT
8439429 TAT
1 TAT
8439432 TAAATATAAT
Statistics
Matches: 94, Mismatches: 21, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
58 3 0.03
59 43 0.46
60 46 0.49
61 2 0.02
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.41
Consensus pattern (59 bp):
TATATGAATTTACTAAAATCATAATATATAATCTATAAAATATAATTTAAAATAATTAT
Found at i:8443079 original size:20 final size:19
Alignment explanation
Indices: 8443065--8443114 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 19
8443055 ATTTTCAAGA
8443065 ATTTACCAAATTTTTTTAAG
1 ATTTACCAAA-TTTTTTAAG
*
8443085 ATTTA-CTAATATTTTTAAG
1 ATTTACCAAAT-TTTTTAAG
8443104 ATTATACCAAA
1 ATT-TACCAAA
8443115 ATTTCTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
18 1 0.04
19 14 0.56
20 7 0.28
21 3 0.12
ACGTcount: A:0.40, C:0.10, G:0.04, T:0.46
Consensus pattern (19 bp):
ATTTACCAAATTTTTTAAG
Found at i:8443118 original size:20 final size:19
Alignment explanation
Indices: 8443052--8443118 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 19
8443042 TTTTTTTATA
*
8443052 AAAATTTTCAAGAATTTACC
1 AAAATTTTTAAG-ATTTACC
* *
8443072 AAATTTTTTTAAGATTTACT
1 AAA-ATTTTTAAGATTTACC
*
8443092 AATATTTTTAAGATTATACC
1 AAAATTTTTAAGATT-TACC
8443112 AAAATTT
1 AAAATTT
8443119 CTAAACCTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
19 11 0.29
20 20 0.53
21 7 0.18
ACGTcount: A:0.42, C:0.09, G:0.04, T:0.45
Consensus pattern (19 bp):
AAAATTTTTAAGATTTACC
Found at i:8443600 original size:65 final size:65
Alignment explanation
Indices: 8443514--8443648 Score: 218
Period size: 65 Copynumber: 2.1 Consensus size: 65
8443504 GATTTTAAAG
* *
8443514 TAAAGGTGTTTGTGGGTCGAGTCGAGTTGA-ACTTAAGTATAATATTAACATAATATAAAGTATT
1 TAAATGTGTTTGTGGGTCGAGTCGAGTT-ATACTTAAGCATAATATTAACATAATATAAAGTATT
8443578 A
65 A
* *
8443579 TAAATGTGTTTGTGGGTCGAGTCGAGTTATACTTAAGCATGATATTAACATAGTATAAAGTATTA
1 TAAATGTGTTTGTGGGTCGAGTCGAGTTATACTTAAGCATAATATTAACATAATATAAAGTATTA
8443644 TAAAT
1 TAAAT
8443649 TTAAAAATAG
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
64 1 0.02
65 64 0.98
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (65 bp):
TAAATGTGTTTGTGGGTCGAGTCGAGTTATACTTAAGCATAATATTAACATAATATAAAGTATTA
Found at i:8443669 original size:65 final size:65
Alignment explanation
Indices: 8443535--8443670 Score: 148
Period size: 65 Copynumber: 2.1 Consensus size: 65
8443525 GTGGGTCGAG
* ***** * * *
8443535 TCGAGTTGAACTTAAGTATAATATTAACATAATATAAAGTATTATAAATGTGTTTGTGGGTCGAG
1 TCGAGTTGAACTTAAGCATAATATTAACATAATATAAAGTATTATAAATGTAAAAATAGGCCGAC
* * *
8443600 TCGAGTT-ATACTTAAGCATGATATTAACATAGTATAAAGTATTATAAATTTAAAAATAGGCCGA
1 TCGAGTTGA-ACTTAAGCATAATATTAACATAATATAAAGTATTATAAATGTAAAAATAGGCCGA
8443664 C
65 C
8443665 TCGAGT
1 TCGAGT
8443671 CAAGTTCTGG
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
64 1 0.02
65 57 0.98
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.35
Consensus pattern (65 bp):
TCGAGTTGAACTTAAGCATAATATTAACATAATATAAAGTATTATAAATGTAAAAATAGGCCGAC
Found at i:8452831 original size:26 final size:28
Alignment explanation
Indices: 8452796--8452847 Score: 90
Period size: 26 Copynumber: 1.9 Consensus size: 28
8452786 TTTTTAAATT
8452796 AAAGGTTTAA-TTAAAA-TTTCAAAAAA
1 AAAGGTTTAATTTAAAATTTTCAAAAAA
8452822 AAAGGTTTAATTTAAAATTTTCAAAA
1 AAAGGTTTAATTTAAAATTTTCAAAA
8452848 TTTGAGGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 10 0.42
27 6 0.25
28 8 0.33
ACGTcount: A:0.54, C:0.04, G:0.08, T:0.35
Consensus pattern (28 bp):
AAAGGTTTAATTTAAAATTTTCAAAAAA
Found at i:8452926 original size:31 final size:33
Alignment explanation
Indices: 8452865--8452933 Score: 88
Period size: 31 Copynumber: 2.2 Consensus size: 33
8452855 GGATTAATGT
* *
8452865 AAATTTTTAAAAAGTTTGCGGAAGGTCTAATTA
1 AAATTTTTAAAAACTTTGCGGAAGGCCTAATTA
*
8452898 AAATTTTT-AAAACTTT-TGGAAGGCCTAATTA
1 AAATTTTTAAAAACTTTGCGGAAGGCCTAATTA
*
8452929 GAATT
1 AAATT
8452934 CTAAAAAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 17 0.53
32 7 0.22
33 8 0.25
ACGTcount: A:0.39, C:0.07, G:0.16, T:0.38
Consensus pattern (33 bp):
AAATTTTTAAAAACTTTGCGGAAGGCCTAATTA
Found at i:8476691 original size:30 final size:30
Alignment explanation
Indices: 8476604--8476691 Score: 81
Period size: 30 Copynumber: 3.0 Consensus size: 30
8476594 TCCACCACTA
* * *
8476604 GTACATAGTACTTGGAAACTATAATCACTG
1 GTACATAGTACATGGAAACTGTAATCACCG
* * * * * *
8476634 GCACAGAGTGCCTGG-AATTG-AAACACCG
1 GTACATAGTACATGGAAACTGTAATCACCG
8476662 GTACATAGTACATGGAAACTGTAATCACCG
1 GTACATAGTACATGGAAACTGTAATCACCG
8476692 ACACTTAGTG
Statistics
Matches: 42, Mismatches: 14, Indels: 4
0.70 0.23 0.07
Matches are distributed among these distances:
28 17 0.40
29 7 0.17
30 18 0.43
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (30 bp):
GTACATAGTACATGGAAACTGTAATCACCG
Found at i:8477696 original size:17 final size:17
Alignment explanation
Indices: 8477676--8477714 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
8477666 TTTGTATGTT
* *
8477676 TTATTTAACTTATTTTA
1 TTATTTAACATATATTA
8477693 TTATTTAACATATATTA
1 TTATTTAACATATATTA
8477710 TTATT
1 TTATT
8477715 AAATAAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (17 bp):
TTATTTAACATATATTA
Found at i:8477742 original size:16 final size:16
Alignment explanation
Indices: 8477696--8477744 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
8477686 TATTTTATTA
*
8477696 TTTAACATAT-ATTAT
1 TTTAACATATAAATAT
8477711 TATTAA-ATA-AATATAT
1 T-TTAACATATAA-ATAT
8477727 TTTAACATATAAATAT
1 TTTAACATATAAATAT
8477743 TT
1 TT
8477745 AATGACAACC
Statistics
Matches: 28, Mismatches: 1, Indels: 9
0.74 0.03 0.24
Matches are distributed among these distances:
15 9 0.32
16 17 0.61
17 2 0.07
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (16 bp):
TTTAACATATAAATAT
Found at i:8481754 original size:30 final size:30
Alignment explanation
Indices: 8481718--8481782 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
8481708 CAACTTAACA
*
8481718 AACAAATGCCTCTAAAATAATAACAAAATT
1 AACAAATACCTCTAAAATAATAACAAAATT
8481748 AACAAATACCTCTAAAATAATAACAAAATT
1 AACAAATACCTCTAAAATAATAACAAAATT
8481778 AACAA
1 AACAA
8481783 TAAAACAAGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.60, C:0.17, G:0.02, T:0.22
Consensus pattern (30 bp):
AACAAATACCTCTAAAATAATAACAAAATT
Found at i:8481825 original size:11 final size:11
Alignment explanation
Indices: 8481811--8481858 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
8481801 ATATCTAAAT
*
8481811 AATAATAACAA
1 AATAATAGCAA
*
8481822 AATAGTAGCAA
1 AATAATAGCAA
* *
8481833 CATAATAGTAA
1 AATAATAGCAA
*
8481844 AATAGTAGCAA
1 AATAATAGCAA
8481855 AATA
1 AATA
8481859 GGGAGAAAAC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.60, C:0.08, G:0.10, T:0.21
Consensus pattern (11 bp):
AATAATAGCAA
Found at i:8481837 original size:22 final size:22
Alignment explanation
Indices: 8481812--8481854 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
8481802 TATCTAAATA
8481812 ATAATAACAAAATAGTAGCAAC
1 ATAATAACAAAATAGTAGCAAC
**
8481834 ATAATAGTAAAATAGTAGCAA
1 ATAATAACAAAATAGTAGCAA
8481855 AATAGGGAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.58, C:0.09, G:0.12, T:0.21
Consensus pattern (22 bp):
ATAATAACAAAATAGTAGCAAC
Found at i:8481859 original size:11 final size:11
Alignment explanation
Indices: 8481819--8481859 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
8481809 ATAATAATAA
8481819 CAAAATAGTAG
1 CAAAATAGTAG
* *
8481830 CAACATAATAG
1 CAAAATAGTAG
*
8481841 TAAAATAGTAG
1 CAAAATAGTAG
8481852 CAAAATAG
1 CAAAATAG
8481860 GGAGAAAACA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:8482485 original size:51 final size:51
Alignment explanation
Indices: 8482430--8482535 Score: 194
Period size: 51 Copynumber: 2.1 Consensus size: 51
8482420 TATTTATCCC
8482430 AAAAATATATTATCAAATGGGATAAGTCACATTTGGTATCTGTACTTTCAT
1 AAAAATATATTATCAAATGGGATAAGTCACATTTGGTATCTGTACTTTCAT
* *
8482481 AAAAATATATTATCAAATTGGATAAGTTACATTTGGTATCTGTACTTTCAT
1 AAAAATATATTATCAAATGGGATAAGTCACATTTGGTATCTGTACTTTCAT
8482532 AAAA
1 AAAA
8482536 TGTCCAATGC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (51 bp):
AAAAATATATTATCAAATGGGATAAGTCACATTTGGTATCTGTACTTTCAT
Found at i:8482619 original size:63 final size:63
Alignment explanation
Indices: 8482514--8482644 Score: 183
Period size: 63 Copynumber: 2.1 Consensus size: 63
8482504 AAGTTACATT
* * * * * *
8482514 TGGTATCTGTACTTTCATAAAATGTCCAATGCGGTACCTGAACTATCTA-TTTGTGTTTTATTA
1 TGGTACCTATACTTTCATAAAATGTCCAATGCAGCACATGAACTATC-AGTATGTGTTTTATTA
*
8482577 TGGTACCTATACTTTCATAAAATGTCCAATGTAGCACATGAACTATCAGTATGTGTTTTATTA
1 TGGTACCTATACTTTCATAAAATGTCCAATGCAGCACATGAACTATCAGTATGTGTTTTATTA
8482640 TGGTA
1 TGGTA
8482645 TCTAATGTTA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
62 1 0.02
63 59 0.98
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.40
Consensus pattern (63 bp):
TGGTACCTATACTTTCATAAAATGTCCAATGCAGCACATGAACTATCAGTATGTGTTTTATTA
Found at i:8489807 original size:132 final size:132
Alignment explanation
Indices: 8489640--8491285 Score: 2219
Period size: 132 Copynumber: 12.5 Consensus size: 132
8489630 ACCAGAGAGA
* * * * * * **
8489640 TAGAATTACTGGC-TCTAATATACTCCGCTGCAACCTCAGGGAGGTAAAATCTGCCATTTTTTAT
1 TAGAATTACTGGCTTC-AATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGAT
* * * * * *
8489704 CTGCTTCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAATCTATTCCACTGTTGCCCAAGG
65 CTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGG
8489769 -AG
130 AAG
* * * *
8489771 ATAGAATTACTAGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACTATCTTCGAT
1 -TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGAT
* * *
8489836 TTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGG
65 CTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGG
8489901 AAG
130 AAG
*
8489904 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATC
* * *
8489969 TGCTCCACTACTGTTTAGGGAGACAATATATGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
66 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
8490034 AG
131 AG
* * * *
8490036 TAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGTCGTCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATC
* * * * *
8490101 TACTTC-GT--TG-TCTATGCGAGAAGACAAGATCTAAAATCTTCAGTCTATTCCACTGCTGCCC
66 TGCTCCACTACTGCT-TA-G-G-G-AGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCC
*
8490162 AAGG-AG
126 AGGGAAG
*
8490168 ATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGAT
1 -TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGAT
* * *
8490233 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGCTGCCCAGGG
65 CTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGG
8490298 AAG
130 AAG
* *
8490301 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTTGATT
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATC
* * * *
8490366 TGCTCCACTACTGTTTAGGGAGACAATATATGAAATCTTCAATCTATTACACTGCTGCCCAGGGA
66 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
8490431 AG
131 AG
* * * *
8490433 TAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGTCGTCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATC
* * * * *
8490498 TGCTTCGCTGTCTA-TGC-GA-GAAGACAAGATCTAAAATCTTCAGTCTATTCCACTGCTGCCCA
66 TGC-TC-C--ACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCA
*
8490560 AGG-AG
127 GGGAAG
* * * *
8490565 ATAGAATTACTGGCTTCAATGTACTCCACTGTAACTATAGGGAGGTAAAATCCACCATCTTCAAT
1 -TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGAT
* * * *
8490630 TTGTTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGG
65 CTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGG
8490695 AAG
130 AAG
* *
8490698 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATC
* * *
8490763 TGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATATTCAATCTATT-CACTGCTGCCCAGGGA
66 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
8490827 AG
131 AG
*
8490829 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATC
* * *
8490894 TGCTCCACTACTGTTTAGGGAGACAATATATGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
66 TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
8490959 AG
131 AG
* * * *
8490961 TAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGTCGTCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATC
* * * *
8491026 TGCTTC-GT--TG-TCTATGCGAGAAGACAAGATCTAAAATCTTCAGTCTATTCCACTGCTGCCC
66 TGCTCCACTACTGCT-TA-G-G-G-AGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCC
*
8491087 AAGG-AG
126 AGGGAAG
*
8491093 ATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGAT
1 -TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGAT
* * *
8491158 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGCTGCCCAGGG
65 CTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGG
8491223 AAG
130 AAG
* *
8491226 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTT
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTT
8491286 TAATCTACTT
Statistics
Matches: 1341, Mismatches: 139, Indels: 68
0.87 0.09 0.04
Matches are distributed among these distances:
128 2 0.00
129 11 0.01
130 5 0.00
131 128 0.10
132 854 0.64
133 318 0.24
134 6 0.00
135 4 0.00
136 11 0.01
137 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (132 bp):
TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATC
TGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
AG
Found at i:8489901 original size:44 final size:44
Alignment explanation
Indices: 8489721--8490298 Score: 118
Period size: 44 Copynumber: 13.1 Consensus size: 44
8489711 ACTACTGCTT
* * *
8489721 AGGGAGATAAGATCTGTAATCTTTAATCTATTCCACTGTTGCCC
1 AGGGAGATAAGATCTGTAATCTTCAATCTACTCCACTGCTGCCC
* * * * *
8489765 AAGGAGAT-AGA-AT-TACTAGCTTCAATGTACTCCACTG-TAACCTC
1 AGGGAGATAAGATCTGTA--ATCTTCAATCTACTCCACTGCT-GCC-C
* * ** * * * * **
8489809 AGGGAGGTAAAATCCACT-ATCTTCGATTTGCTCCACTACTGCTT
1 AGGGAGATAAGAT-CTGTAATCTTCAATCTACTCCACTGCTGCCC
*
8489853 AGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCC
1 AGGGAGATAAGATCTGTAATCTTCAATCTACTCCACTGCTGCCC
* * * *
8489897 AGGGA-AGT-AGA-AT-TACTGGCTTCAATGTACTCCACTG-TAACCAC
1 AGGGAGA-TAAGATCTGTAAT--CTTCAATCTACTCCACTGCT-GCC-C
* * * ** ** * * ***
8489941 AGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCACTACTGTTT
1 AGGGAGATAAGATCTGTAATCTTCAATCTACTCCACTGCTGCCC
* * * * *
8489985 AGGGAGACAATATATGAAATCTTCAATCTATTCCACTGCTGCCC
1 AGGGAGATAAGATCTGTAATCTTCAATCTACTCCACTGCTGCCC
* * * *
8490029 AGGGA-AGT-AGA-AT-TATTGGCTTCAATGTACTCCACTG-TAACCAC
1 AGGGAGA-TAAGATCTGTAAT--CTTCAATCTACTCCACTGCT-GCC-C
* * ** * * ** *
8490073 AGGGAGGTAAAATCTGTCGTCTTCGATCTACTTCGTTGTCTATG-CG
1 AGGGAGATAAGATCTGTAATCTTCAATCTACTCCACTG-C--TGCCC
* * ** * *
8490119 A-GAAGACAAGATCTAAAATCTTCAGTCTATTCCACTGCTGCCC
1 AGGGAGATAAGATCTGTAATCTTCAATCTACTCCACTGCTGCCC
* * * * *
8490162 AAGGAGAT-AGA-AT-TACTGGCTTCAATGTACTCCACTG-TAACCAC
1 AGGGAGATAAGATCTGTAAT--CTTCAATCTACTCCACTGCT-GCC-C
* * **** * * * **
8490206 AGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTT
1 AGGGAGATAAGATCTGTAATCTTCAATCTACTCCACTGCTGCCC
* *
8490250 AGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGCTGCCC
1 AGGGAGATAAGATCTGTAATCTTCAATCTACTCCACTGCTGCCC
8490294 AGGGA
1 AGGGA
8490299 AGTAGAATTA
Statistics
Matches: 353, Mismatches: 138, Indels: 86
0.61 0.24 0.15
Matches are distributed among these distances:
41 9 0.03
42 11 0.03
43 88 0.25
44 146 0.41
45 87 0.25
46 5 0.01
47 5 0.01
48 1 0.00
49 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (44 bp):
AGGGAGATAAGATCTGTAATCTTCAATCTACTCCACTGCTGCCC
Found at i:8490211 original size:397 final size:397
Alignment explanation
Indices: 8489729--8491275 Score: 2369
Period size: 397 Copynumber: 3.9 Consensus size: 397
8489719 TTAGGGAGAT
** * * *
8489729 AAGATCTGTAATCTTTAATCTATTCCACTGTTGCCCAAGGAGATAGAATTACTAGCTTCAATGTA
1 AAGATCTAAAATCTTCAATCTATTCCACTGCTGCCCAAGGAGATAGAATTACTGGCTTCAATGTA
* * *
8489794 CTCCACTGTAACCTCAGGGAGGTAAAATCCACTATCTTCGATTTGCTCCACTACTGCTTAGGGAG
66 CTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAG
8489859 ATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATG
131 ATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATG
* * *
8489924 TACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCACTACTGTTTAGGG
196 TACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGG
* * *
8489989 AGACAATATATGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTATTGGCTTCAA
261 AGACAAGATATGAAATATTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAA
*
8490054 TGTACTCCACTGTAACCACAGGGAGGTAAAATCTGTCGTCTTCGATCTACTTCGTTGTCTATGCG
326 TGTACTCCACTGTAACCACAGGGAGGTAAAATCTGTCGTCTTCGATCTGCTTCGTTGTCTATGCG
8490119 AGAAGAC
391 AGAAGAC
*
8490126 AAGATCTAAAATCTTCAGTCTATTCCACTGCTGCCCAAGGAGATAGAATTACTGGCTTCAATGTA
1 AAGATCTAAAATCTTCAATCTATTCCACTGCTGCCCAAGGAGATAGAATTACTGGCTTCAATGTA
8490191 CTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAG
66 CTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAG
*
8490256 ATAAGATCTGTAATATTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATG
131 ATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATG
* * * *
8490321 TACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTTGATTTGCTCCACTACTGTTTAGGG
196 TACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGG
* * * *
8490386 AGACAATATATGAAATCTTCAATCTATTACACTGCTGCCCAGGGAAGTAGAATTATTGGCTTCAA
261 AGACAAGATATGAAATATTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAA
*
8490451 TGTACTCCACTGTAACCACAGGGAGGTAAAATCTGTCGTCTTCGATCTGCTTCGCTGTCTATGCG
326 TGTACTCCACTGTAACCACAGGGAGGTAAAATCTGTCGTCTTCGATCTGCTTCGTTGTCTATGCG
8490516 AGAAGAC
391 AGAAGAC
*
8490523 AAGATCTAAAATCTTCAGTCTATTCCACTGCTGCCCAAGGAGATAGAATTACTGGCTTCAATGTA
1 AAGATCTAAAATCTTCAATCTATTCCACTGCTGCCCAAGGAGATAGAATTACTGGCTTCAATGTA
* * * * *
8490588 CTCCACTGTAACTATAGGGAGGTAAAATCCACCATCTTCAATTTGTTCCACTACTGCTTAGGGAG
66 CTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAG
8490653 ATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATG
131 ATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATG
*
8490718 TACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGG
196 TACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGG
* * *
8490783 AGATAAGATCTGTAATATTCAATCTATT-CACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAA
261 AGACAAGATATGAAATATTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAA
* * * * * * *
8490847 TGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCACTACTGTTTA-
326 TGTACTCCACTGTAACCACAGGGAGGTAAAATCTGTCGTCTTCGATCTGCTTC-GT--TGTCTAT
8490911 G-G-G-AGAC
388 GCGAGAAGAC
* * * * *
8490918 AATATATGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA-AGTAGAATTATTGGCTTCAATGT
1 AAGATCTAAAATCTTCAATCTATTCCACTGCTGCCCAAGGAGA-TAGAATTACTGGCTTCAATGT
*** * * *
8490982 ACTCCACTGTAACCACAGGGAGGTAAAATCTGTCGTCTTCGATCTGCTTC-GT--TG-TCTATGC
65 ACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCT-TA-G-
* ** * *
8491043 GAGAAGACAAGATCTAAAATCTTCAGTCTATTCCACTGCTGCCCAAGG-AGATAGAATTACTGGC
127 G-G-AGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGC
8491107 TTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTG
189 TTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTG
* * *
8491172 CTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTG
254 CTTAGGGAGACAAGATATGAAATATTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTG
8491237 GCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAAT
319 GCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAAT
8491276 TCACCATCTT
Statistics
Matches: 1077, Mismatches: 62, Indels: 22
0.93 0.05 0.02
Matches are distributed among these distances:
391 1 0.00
392 4 0.00
393 1 0.00
394 3 0.00
395 103 0.10
396 235 0.22
397 724 0.67
398 1 0.00
399 5 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (397 bp):
AAGATCTAAAATCTTCAATCTATTCCACTGCTGCCCAAGGAGATAGAATTACTGGCTTCAATGTA
CTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAG
ATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATG
TACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGG
AGACAAGATATGAAATATTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAA
TGTACTCCACTGTAACCACAGGGAGGTAAAATCTGTCGTCTTCGATCTGCTTCGTTGTCTATGCG
AGAAGAC
Found at i:8490695 original size:44 final size:44
Alignment explanation
Indices: 8490621--8490826 Score: 118
Period size: 44 Copynumber: 4.7 Consensus size: 44
8490611 AAAATCCACC
* * * **
8490621 ATCTTCAATTTGTTCCACTACTGCTTAGGGAGATAAGATCTGTA
1 ATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAAGATCTGTA
*
8490665 ATCTTCAATCTATTCCACTGCTGCCCAGGGA-AGT-AGA-AT-TA
1 ATCTTCAATCTATTCCACTGCTGCCCAGGGAGA-TAAGATCTGTA
* * * * * * ****
8490706 CTGGCTTCAATGTACTCCACTG-TAACCTCAGGGAGGTAAAATCCACC
1 AT--CTTCAATCTATTCCACTGCT-GCC-CAGGGAGATAAGATCTGTA
* ** * **
8490753 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTA
1 ATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAAGATCTGTA
*
8490797 ATATTCAATCTATT-CACTGCTGCCCAGGGA
1 ATCTTCAATCTATTCCACTGCTGCCCAGGGA
8490827 AGTAGAATTA
Statistics
Matches: 115, Mismatches: 37, Indels: 21
0.66 0.21 0.12
Matches are distributed among these distances:
41 3 0.03
42 2 0.02
43 35 0.30
44 56 0.49
45 17 0.15
46 1 0.01
47 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.30
Consensus pattern (44 bp):
ATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAAGATCTGTA
Found at i:8490725 original size:43 final size:44
Alignment explanation
Indices: 8490667--8490858 Score: 112
Period size: 43 Copynumber: 4.4 Consensus size: 44
8490657 GATCTGTAAT
*
8490667 CTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAAT-TACTGG
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATCTACTGG
* * * * * ***
8490710 CTTCAATGTACTCCACTG-TAACCTCAGGGAGGTAAAATCCACCAT
1 CTTCAATCTACTCCACTGCT-GCC-CAGGGAAGTAGAATCTACTGG
* * * ** *
8490755 CTTCGATCTGCTCCACTACTGCTTAGGG-AGATA-AGATCTGTAAT--
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAG-TAGA-ATC--TACTGG
* *
8490799 ATTCAATCTA-TTCACTGCTGCCCAGGGAAGTAGAAT-TACTGG
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATCTACTGG
*
8490841 CTTCAATGTACTCCACTG
1 CTTCAATCTACTCCACTG
8490859 TAACCACAGG
Statistics
Matches: 105, Mismatches: 31, Indels: 26
0.65 0.19 0.16
Matches are distributed among these distances:
40 3 0.03
42 9 0.09
43 43 0.41
44 31 0.30
45 17 0.16
46 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.29
Consensus pattern (44 bp):
CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATCTACTGG
Found at i:8491301 original size:265 final size:264
Alignment explanation
Indices: 8489640--8491285 Score: 2155
Period size: 265 Copynumber: 6.2 Consensus size: 264
8489630 ACCAGAGAGA
* * * * ** * **
8489640 TAGAATTACTGGC-TCTAATATACTCCGCTGCAACCTCAGGGAGGTAAAATCTGCCATTTTTTAT
1 TAGAATTACTGGCTTC-AATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGAT
* * * * *
8489704 CTGCTTCACTACTG-CT-TAGGGAGATAAGATCTGTAATCTTTAATCTATTCCACTGTTGCCCAA
65 CTGCTCCACTA-TGTCTAT-GGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAA
* * *
8489767 GG-AGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACTATCT
128 GGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCT
* * *
8489831 TCGATTTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCC
192 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCC
8489896 CAGGGAAG
257 CAGGGAAG
* *
8489904 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGATC
* * * *
8489969 TGCTCCACTACTGTTTA-GGGAGACAATATATGAAATCTTCAATCTATTCCACTGCTGCCCAGGG
66 TGCTCCACTA-TGTCTATGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAAGG
* *** *
8490033 AAGTAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGTCGTCTTCG
130 AAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCG
* * * * *
8490098 ATCTACTTC-GT--TG-TCTATGCGAGAAGACAAGATCTAAAATCTTCAGTCTATTCCACTGCTG
195 ATCTGCTCCACTACTGCT-TA-G-G-G-AGACAAGATCTGAAATCTTCAATCTATTCCACTGCTG
*
8490159 CCCAAGG-AG
255 CCCAGGGAAG
8490168 ATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGAT
1 -TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGAT
* * * *
8490233 CTGCTCCACTACTG-CT-TAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGCTGCCCAG
65 CTGCTCCACTA-TGTCTAT-GGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAA
*
8490296 GGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTT
128 GGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTT
* * * * * *
8490361 TGATTTGCTCCACTACTGTTTAGGGAGACAATATATGAAATCTTCAATCTATTACACTGCTGCCC
193 CGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCC
8490426 AGGGAAG
258 AGGGAAG
* *** *
8490433 TAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGTCGTCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGATC
* * * *
8490498 TGCTTCGC--TGTCTATGCGAGAAGACAAGATCTAAAATCTTCAGTCTATTCCACTGCTGCCCAA
66 TGCTCCACTATGTCTATG-G-G-AGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAA
* *
8490561 GG-AGATAGAATTACTGGCTTCAATGTACTCCACTGTAACTATAGGGAGGTAAAATCCACCATCT
128 GGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCT
* * * * *
8490625 TCAATTTGTTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCC
192 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCC
8490690 CAGGGAAG
257 CAGGGAAG
*
8490698 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGATC
* * * *
8490763 TGCTCCACTACTG-CT-TAGGGAGATAAGATCTGTAATATTCAATCTATT-CACTGCTGCCCAGG
66 TGCTCCACTA-TGTCTAT-GGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAAG
* *
8490825 GAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTT
129 GAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTC
* * *
8490890 GATCTGCTCCACTACTGTTTAGGGAGACAATATATGAAATCTTCAATCTATTCCACTGCTGCCCA
194 GATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCA
8490955 GGGAAG
259 GGGAAG
* *** *
8490961 TAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGTCGTCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGATC
* * * *
8491026 TGCTTC-GT-TGTCTATGCGAGAAGACAAGATCTAAAATCTTCAGTCTATTCCACTGCTGCCCAA
66 TGCTCCACTATGTCTATG-G-G-AGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAA
8491089 GG-AGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCT
128 GGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCT
* * *
8491153 TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGCTGCC
192 TCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCC
8491218 CAGGGAAG
257 CAGGGAAG
*
8491226 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTT
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTT
8491286 TAATCTACTT
Statistics
Matches: 1212, Mismatches: 135, Indels: 69
0.86 0.10 0.05
Matches are distributed among these distances:
260 3 0.00
261 9 0.01
262 7 0.01
263 203 0.17
264 328 0.27
265 647 0.53
266 4 0.00
267 4 0.00
268 6 0.00
269 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (264 bp):
TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGATC
TGCTCCACTATGTCTATGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAAGGA
AGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGA
TCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGG
GAAG
Found at i:8492668 original size:14 final size:15
Alignment explanation
Indices: 8492649--8492686 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
8492639 AGCCTCTCCA
8492649 TTTTATTTTTCAT-T
1 TTTTATTTTTCATCT
8492663 TTTTA-TTTTCATCT
1 TTTTATTTTTCATCT
*
8492677 TTTCATTTTT
1 TTTTATTTTT
8492687 TCACATCATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 7 0.33
14 10 0.48
15 4 0.19
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTATTTTTCATCT
Found at i:8492680 original size:21 final size:19
Alignment explanation
Indices: 8492648--8492687 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 19
8492638 TAGCCTCTCC
8492648 ATTTTATTTTTCATTTTTT
1 ATTTTATTTTTCATTTTTT
8492667 ATTTTCATCTTTTCATTTTTT
1 ATTTT-AT-TTTTCATTTTTT
8492688 CACATCATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.26
20 2 0.11
21 12 0.63
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (19 bp):
ATTTTATTTTTCATTTTTT
Found at i:8493655 original size:19 final size:19
Alignment explanation
Indices: 8493631--8493670 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
8493621 GGTTTGGCAG
8493631 AAAAAATCCAAAAGAATGA
1 AAAAAATCCAAAAGAATGA
**
8493650 AAAAAATCGTAAAGAATGA
1 AAAAAATCCAAAAGAATGA
8493669 AA
1 AA
8493671 GAACATTTGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.68, C:0.07, G:0.12, T:0.12
Consensus pattern (19 bp):
AAAAAATCCAAAAGAATGA
Found at i:8495564 original size:19 final size:19
Alignment explanation
Indices: 8495540--8495586 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
8495530 AACTATGTTT
*
8495540 AATGCATATG-ATGTAATG
1 AATGCATATGCATGAAATG
*
8495558 AAATGCAAATGCATGAAATG
1 -AATGCATATGCATGAAATG
8495578 AATGCATAT
1 AATGCATAT
8495587 AGAGACGTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.45, C:0.09, G:0.19, T:0.28
Consensus pattern (19 bp):
AATGCATATGCATGAAATG
Found at i:8498812 original size:148 final size:146
Alignment explanation
Indices: 8498543--8498833 Score: 338
Period size: 148 Copynumber: 2.0 Consensus size: 146
8498533 GTCAAATTTT
*
8498543 AACAATGATTTTTTAATCACTATTATTAAATGTGTTTGTTAATTTAAATATCTTTCATACTTATC
1 AACAATGATTTTTTAATCACTATTATTAAATGTATTTGTTAATTTAAATATCTTTCATACTTATC
*** **
8498608 ATGATGTATTATTATAATTGTTGTATGTTATTCTATTTTTTAAATTTTTTTAAATTAAAATTATA
66 ATGATGTATTATTATAATTGTTGTATGTTATTCTATACCTT--ATTTTTCCAAATTAAAATTATA
*
8498673 GTTAATTTTCTTAATGTC
129 GTTAACTTTCTTAATGTC
* * * * *
8498691 AACAATTATTTTTTAATCACTATTATTAAATTTATCTAATAATTTAGTTTAAATATCTTTCATAT
1 AACAATGATTTTTTAATCACTATTATTAAATGTAT-T--T--GTTAATTTAAATATCTTTCATAC
* * *
8498756 TTATCATGA-GCTATTATTATAATTGTTTTATGTTGTT-T-TACCTT-TTTTTCCAAATTAACAT
61 TTATCATGATG-TATTATTATAATTGTTGTATGTTATTCTATACCTTATTTTTCCAAATTAAAAT
*
8498817 TATAGTTTACTTTCTTA
125 TATAGTTAACTTTCTTA
8498834 TATAGTATAT
Statistics
Matches: 121, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
148 61 0.50
149 1 0.01
151 4 0.03
152 2 0.02
153 53 0.44
ACGTcount: A:0.32, C:0.09, G:0.06, T:0.53
Consensus pattern (146 bp):
AACAATGATTTTTTAATCACTATTATTAAATGTATTTGTTAATTTAAATATCTTTCATACTTATC
ATGATGTATTATTATAATTGTTGTATGTTATTCTATACCTTATTTTTCCAAATTAAAATTATAGT
TAACTTTCTTAATGTC
Found at i:8499617 original size:30 final size:30
Alignment explanation
Indices: 8499558--8499617 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
8499548 CAGAATAGGA
* *
8499558 TAGAGCAAAACATAAAAAAATAGATCAGAG
1 TAGAGCAAAACATAAAAAAACAGAACAGAG
* * *
8499588 TAGAGCAGAACATAATAAAGCAGAACAGAG
1 TAGAGCAAAACATAAAAAAACAGAACAGAG
8499618 CATGTATGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.57, C:0.12, G:0.20, T:0.12
Consensus pattern (30 bp):
TAGAGCAAAACATAAAAAAACAGAACAGAG
Found at i:8505899 original size:19 final size:21
Alignment explanation
Indices: 8505848--8505905 Score: 84
Period size: 21 Copynumber: 2.9 Consensus size: 21
8505838 GGTGGATCAA
*
8505848 CTCTTACGAGCTTTTGTTAAG
1 CTCTTACGAGCTTCTGTTAAG
*
8505869 CTCTTACGAGCTTCTGTTCAG
1 CTCTTACGAGCTTCTGTTAAG
8505890 CT-TT-CGAGCTTCTGTT
1 CTCTTACGAGCTTCTGTT
8505906 GGTGTATTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.34
20 2 0.06
21 21 0.60
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.43
Consensus pattern (21 bp):
CTCTTACGAGCTTCTGTTAAG
Found at i:8507730 original size:24 final size:26
Alignment explanation
Indices: 8507703--8507754 Score: 72
Period size: 24 Copynumber: 2.1 Consensus size: 26
8507693 TTTATTTCAG
*
8507703 TAATAATGTATTTT-TTT-ATACAAT
1 TAATAATATATTTTATTTCATACAAT
*
8507727 TAATAATATATTTTATTTCATATAAT
1 TAATAATATATTTTATTTCATACAAT
8507753 TA
1 TA
8507755 TTGCAATGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 13 0.54
25 3 0.12
26 8 0.33
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.54
Consensus pattern (26 bp):
TAATAATATATTTTATTTCATACAAT
Found at i:8510921 original size:10 final size:10
Alignment explanation
Indices: 8510906--8510933 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
8510896 AAGCCGTGTT
8510906 GATTTCACAG
1 GATTTCACAG
8510916 GATTTCACAG
1 GATTTCACAG
8510926 GATTTCAC
1 GATTTCAC
8510934 CCAGAACTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (10 bp):
GATTTCACAG
Found at i:8511286 original size:31 final size:31
Alignment explanation
Indices: 8511251--8511313 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
8511241 ACGTAATACT
8511251 TAGTTTCTTGTTCTCAATTATGTGTGATTAA
1 TAGTTTCTTGTTCTCAATTATGTGTGATTAA
*
8511282 TAGTTTCTTGTTCTCAATTATGTGTGCTTAA
1 TAGTTTCTTGTTCTCAATTATGTGTGATTAA
8511313 T
1 T
8511314 TCTTGGTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.21, C:0.11, G:0.16, T:0.52
Consensus pattern (31 bp):
TAGTTTCTTGTTCTCAATTATGTGTGATTAA
Done.