Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 33 of 221
Found at i:9157554 original size:21 final size:19
Alignment explanation
Indices: 9157530--9157583 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 19
9157520 AGCCTTCAAA
9157530 ATTAATCTTATTCATATTCAT
1 ATTAATCTTATTCATATT--T
*
9157551 ATT-ATGTATATTCATATTT
1 ATTAATCT-TATTCATATTT
*
9157570 ATTAAACTTATTCA
1 ATTAATCTTATTCA
9157584 AAACTGAACT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
19 10 0.36
20 5 0.18
21 13 0.46
ACGTcount: A:0.35, C:0.11, G:0.02, T:0.52
Consensus pattern (19 bp):
ATTAATCTTATTCATATTT
Found at i:9158527 original size:126 final size:125
Alignment explanation
Indices: 9158272--9158838 Score: 692
Period size: 126 Copynumber: 4.5 Consensus size: 125
9158262 GATAAAATCA
* * * * * * *
9158272 AAGCAGGATGATTTATCAGAAGGATTTTTGAAGTCGCGCCCACATGTACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* *
9158337 AGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTTTAAAAAATGCTTC
66 AGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* * * *
9158397 AAGCAGGATGCTTTGA-GAGAAGAATTTGTGAAATCGCGTCCTCATGGACGCGCTTTTACTACAG
1 AAGCAGGATGCTTT-ATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAG
* * * * * * * **
9158461 TTGGTCTTGCAAGAAATAATTTCGAGC-TAACGTTTTTGAACAAATAGTTTAAAAAACATTTC
65 TAGGTCCTGGAA-AAATAATTTCGA-CTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* * * **
9158523 AAGCAGGATGCTTTATAAGAAAAATTTGTGAATTCGCGCCCACGTGGACAAGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * * * *
9158588 AGGTCTTGAAAAAATAATTTTGAGTTGAGGTTTCTGAGCAAATAGTATAAAACAACGCTGC
66 AGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAA-AACGCTTC
* * * *
9158649 AAGTAGCATGCTATT-TTAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
1 AAGCAGGATGCT-TTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAG
* * *
9158713 TTGGTCCTGGAAAAATAATTTTGACTTGACGTTTCTGAGCAAATAGTAT-AAAATCGCTTC
65 TAGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
*
9158773 TAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
9158838 A
66 A
9158839 ACATGTTTGG
Statistics
Matches: 374, Mismatches: 60, Indels: 17
0.83 0.13 0.04
Matches are distributed among these distances:
123 2 0.01
124 63 0.17
125 99 0.26
126 207 0.55
127 3 0.01
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (125 bp):
AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
AGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
Found at i:9158731 original size:251 final size:250
Alignment explanation
Indices: 9158272--9158838 Score: 735
Period size: 251 Copynumber: 2.3 Consensus size: 250
9158262 GATAAAATCA
* * * * * * *
9158272 AAGCAGGATGATTTATCAGAAGGATTTTTGAAGTCGCGCCCACATGTACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATAAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * *
9158337 AGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTTTAAAAAATGCTTCAAGCA
66 AGGTCCTGAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTGCAAGCA
* *
9158402 GGATGCTTTGAGAGAAGAATTTGTGAAATCGCGTCCTCATGGACGCGCTTTTACTACAGTTGGTC
131 GCATGCTTTGAGAGAAGAATTTGTGAAATCGCGCCCTCATGGACGCGCTTTTACTACAGTTGGTC
* * * *
9158467 TTGCAAGAAATAATTTCGAGC-TAACGTTTTTGAACAAATAGTTTAAAAAACATTTC
196 CTGCAAGAAATAATTTCGA-CTTAACGTTTCTGAACAAATAGTAT-AAAAACACTTC
* * **
9158523 AAGCAGGATGCTTTATAAGAAAAATTTGTGAATTCGCGCCCACGTGGACAAGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATAAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * * *
9158588 AGGTCTTGAAAAAATAATTTTGAGTTGAGGTTTCTGAGCAAATAGTATAAAACAACGCTGCAAGT
66 AGGTCCTGAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAA-AACGCTGCAAGC
** * *
9158653 AGCATGCTATT-TTAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTTGG
130 AGCATGCT-TTGAGAGAAGAATTTGTGAAATCGCGCCCTCATGGACGCGCTTTTACTACAGTTGG
* * * * * *
9158717 TCCTGGAA-AAATAATTTTGACTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTC
194 TCCTGCAAGAAATAATTTCGACTTAACGTTTCTGAACAAATAGTATAAAAACACTTC
* *
9158773 TAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATAAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
9158838 A
66 A
9158839 ACATGTTTGG
Statistics
Matches: 272, Mismatches: 41, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
250 69 0.25
251 131 0.48
252 70 0.26
253 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (250 bp):
AAGCAGGATGCTTTATAAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
AGGTCCTGAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTGCAAGCA
GCATGCTTTGAGAGAAGAATTTGTGAAATCGCGCCCTCATGGACGCGCTTTTACTACAGTTGGTC
CTGCAAGAAATAATTTCGACTTAACGTTTCTGAACAAATAGTATAAAAACACTTC
Found at i:9162039 original size:21 final size:21
Alignment explanation
Indices: 9162013--9163216 Score: 784
Period size: 22 Copynumber: 56.7 Consensus size: 21
9162003 CAAATTATAT
*
9162013 TTAAGGGTTAGGATTTTTAAG
1 TTAAGGGTTAGGGTTTTTAAG
9162034 TTAAGGGTTTAGGGTTTTTAAG
1 TTAAGGG-TTAGGGTTTTTAAG
* *
9162056 TTTAGGGTTTAGGGTTTTAAAG
1 TTAAGGG-TTAGGGTTTTTAAG
*
9162078 TTAAGGTTTAGGGTTTTTAAG
1 TTAAGGGTTAGGGTTTTTAAG
9162099 TTAAGGGTTTAGGGTTTTTAGGTTAAGGG
1 TTAAGGG-TTAGGG--TTT---TTAA--G
*
9162128 TTAAGGGTTAAGGTTTTTAAG
1 TTAAGGGTTAGGGTTTTTAAG
* *
9162149 TTAAGGGTTTAAGGTTTTTTAGG
1 TTAAGGG-TT-AGGGTTTTTAAG
*
9162172 TTAAGGGTCTAGGGTTTTAAAG
1 TTAAGGGT-TAGGGTTTTTAAG
* *
9162194 TTAAGGTTTAGGGTTTTCAAG
1 TTAAGGGTTAGGGTTTTTAAG
* *
9162215 TTAGGGGTTAGGGTTTTTAGG
1 TTAAGGGTTAGGGTTTTTAAG
** *
9162236 TTAAGGGTTTAAAGTTTTTAAT
1 TTAAGGG-TTAGGGTTTTTAAG
* *
9162258 TTAAGGGTTAAGGTTTTTCAG
1 TTAAGGGTTAGGGTTTTTAAG
**
9162279 TTAATGATTTAGGG-TTTTAAG
1 TTAA-GGGTTAGGGTTTTTAAG
* ** *
9162300 TCAAGGGTCTAAAGTTTTAAAG
1 TTAAGGGT-TAGGGTTTTTAAG
* *
9162322 TTAAGGTTTAGGGTTTTTAGG
1 TTAAGGGTTAGGGTTTTTAAG
*
9162343 TTAAGGGTTAGGGTTTTTAGG
1 TTAAGGGTTAGGGTTTTTAAG
* *
9162364 TTAAGGGTTAGTGTTTTTAAT
1 TTAAGGGTTAGGGTTTTTAAG
*
9162385 TTAAGGGTTAGGGTTTTAAAG
1 TTAAGGGTTAGGGTTTTTAAG
*
9162406 TTAAGGGTTTAGGGTTTTAAAG
1 TTAAGGG-TTAGGGTTTTTAAG
* *
9162428 TTAAGGGTCTATGGTTTTAAAG
1 TTAAGGGT-TAGGGTTTTTAAG
* *
9162450 TTAAGGTTTA-AGTTTTTCAAG
1 TTAAGGGTTAGGGTTTTT-AAG
*
9162471 TTAAGGGTTAGGGTTTTTAGGG
1 TTAAGGGTTAGGGTTTTTA-AG
* * *
9162493 TTTAGGGTTTAGAGTTTTTAAT
1 TTAAGGG-TTAGGGTTTTTAAG
* *
9162515 TTAAAGGTTTAGGGTTTTTAAT
1 TT-AAGGGTTAGGGTTTTTAAG
* *
9162537 TTAAGAGTTTAGGGTTTTTAGG
1 TTAAG-GGTTAGGGTTTTTAAG
*
9162559 TTAAGGGTTTAGGATTTTTAAG
1 TTAAGGG-TTAGGGTTTTTAAG
*
9162581 AT-AGGAGTTTAGGG--TTT-A-
1 TTAAGG-G-TTAGGGTTTTTAAG
** *
9162599 -T--GGGTTAGTATTTTTAAT
1 TTAAGGGTTAGGGTTTTTAAG
* *
9162617 TTAAGGGTTTAAGGTTTTTAAT
1 TTAAGGG-TTAGGGTTTTTAAG
*
9162639 TTAAGGGTTAGGGTTTTTAAT
1 TTAAGGGTTAGGGTTTTTAAG
* *
9162660 TTAAGAGATTATGGGTTTTTAGG
1 TTAAG-GGTTA-GGGTTTTTAAG
* *
9162683 TTAAGGGTTTAGGATTTTAAAG
1 TTAAGGG-TTAGGGTTTTTAAG
* *
9162705 TTAAGAGTTTA-GG-ATTT-AG
1 TTAAG-GGTTAGGGTTTTTAAG
*
9162724 ----GGGTTAGGGTTTTTAAT
1 TTAAGGGTTAGGGTTTTTAAG
* ** *
9162741 TTAAGAGTTTAAGATTTTTTAGG
1 TTAAG-GGTT-AGGGTTTTTAAG
* *
9162764 TTAATGGTTTAGGGTTTTAAAG
1 TTAA-GGGTTAGGGTTTTTAAG
* * ****
9162786 TTAAGAGTTTAAGGTTTAGGGG
1 TTAAG-GGTTAGGGTTTTTAAG
* * *
9162808 TTAAAGGTTAGGGTTTTAAAT
1 TTAAGGGTTAGGGTTTTTAAG
* * *
9162829 TTAAGGGTTTAAGGTGTTTAAT
1 TTAAGGG-TTAGGGTTTTTAAG
*
9162851 TTAAGGGTTAGGGTTTTTAAT
1 TTAAGGGTTAGGGTTTTTAAG
*
9162872 TTAAGAGGTTAGAGGTTTTTAGG
1 TTAAG-GGTTAG-GGTTTTTAAG
* * *
9162895 TTTAGGGTTTATGGTTTTAAAG
1 TTAAGGG-TTAGGGTTTTTAAG
* ** * *
9162917 TAAAGTTTTATGG-TTTTAGG
1 TTAAGGGTTAGGGTTTTTAAG
* * *
9162937 TTAGGGGTTA-AG-TTTTAAT
1 TTAAGGGTTAGGGTTTTTAAG
*
9162956 TTAAGGGTTTAGGG-TTTTAAT
1 TTAAGGG-TTAGGGTTTTTAAG
*
9162977 TTAAGGGTTAGGGTTTTTAAT
1 TTAAGGGTTAGGGTTTTTAAG
* *
9162998 TTAAGAGATTAGGGTTTTTTATG
1 TTAAG-GGTTAGGG-TTTTTAAG
* *
9163021 TTAAGGGTTTAAGGTTTTAAAG
1 TTAAGGG-TTAGGGTTTTTAAG
* *
9163043 TTTAAAGTTTAGGG--TTT-AG
1 -TTAAGGGTTAGGGTTTTTAAG
* *
9163062 ----GGGTTAAGGTTTTTAAT
1 TTAAGGGTTAGGGTTTTTAAG
* *
9163079 TTAAGGGTTTAGGGTTTTTTAT
1 TTAAGGG-TTAGGGTTTTTAAG
* *
9163101 TTAAGGGTTAGTGTTTTTAAT
1 TTAAGGGTTAGGGTTTTTAAG
* *
9163122 TTAAGAGTTTAGGGTTTTTAGG
1 TTAAG-GGTTAGGGTTTTTAAG
* *
9163144 TTAAGGGTTTAGGATTTTAAAG
1 TTAAGGG-TTAGGGTTTTTAAG
*
9163166 TTAAGGGTTAGGGTTTTTAGG
1 TTAAGGGTTAGGGTTTTTAAG
9163187 TTAA--G---GGG-TTTTAAG
1 TTAAGGGTTAGGGTTTTTAAG
9163202 TTAAGGGTTAGGGTT
1 TTAAGGGTTAGGGTT
9163217 ATGGTTTTTA
Statistics
Matches: 935, Mismatches: 172, Indels: 152
0.74 0.14 0.12
Matches are distributed among these distances:
14 14 0.01
15 14 0.01
16 14 0.01
17 5 0.01
19 19 0.02
20 37 0.04
21 317 0.34
22 386 0.41
23 105 0.11
24 4 0.00
26 3 0.00
27 4 0.00
28 5 0.01
29 8 0.01
ACGTcount: A:0.25, C:0.01, G:0.29, T:0.45
Consensus pattern (21 bp):
TTAAGGGTTAGGGTTTTTAAG
Found at i:9162086 original size:43 final size:43
Alignment explanation
Indices: 9162016--9163193 Score: 747
Period size: 43 Copynumber: 27.6 Consensus size: 43
9162006 ATTATATTTA
*
9162016 AGGG-TTAGGATTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTT
1 AGGGTTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTT
* * *
9162059 AGGGTTTAGGGTTTTAAAGTTAAGGTTTAGGGTTTTTAAGTTA
1 AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
* *
9162102 AGGGTTTAGGGTTTTTAGGTTAAGGGTTAAGGGTTAAGGTTTTTAAGTTA
1 AGGGTTTAGGG--TTT---TTAA--GTTAAGGGTTAGGGTTTTTAAGTTT
* * *
9162152 AGGGTTTAAGGTTTTTTAGGTTAAGGGTCTAGGGTTTTAAAG-TT
1 AGGGTTT-AGGGTTTTTAAGTTAAGGGT-TAGGGTTTTTAAGTTT
* * * * *
9162196 AAGGTTTAGGGTTTTCAAGTTAGGGGTTAGGGTTTTTAGGTTA
1 AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
** * * * *
9162239 AGGGTTTAAAGTTTTTAATTTAAGGGTTAAGGTTTTTCAGTTA
1 AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
* * * ** *
9162282 ATGATTTAGGG-TTTTAAGTCAAGGGTCTAAAGTTTTAAAG-TT
1 AGGGTTTAGGGTTTTTAAGTTAAGGGT-TAGGGTTTTTAAGTTT
* * * *
9162324 AAGGTTTAGGGTTTTTAGGTTAAGGGTTAGGGTTTTTAGGTTA
1 AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
* * * *
9162367 AGGG-TTAGTGTTTTTAATTTAAGGGTTAGGGTTTTAAAGTTA
1 AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
* * *
9162409 AGGGTTTAGGGTTTTAAAGTTAAGGGTCTATGGTTTTAAAG-TT
1 AGGGTTTAGGGTTTTTAAGTTAAGGGT-TAGGGTTTTTAAGTTT
* * *
9162452 AAGGTTTA-AGTTTTTCAAGTTAAGGGTTAGGGTTTTTAGGGTTT
1 AGGGTTTAGGGTTTTT-AAGTTAAGGGTTAGGGTTTTTA-AGTTT
* * *
9162496 AGGGTTTAGAGTTTTTAATTTAAAGGTTTAGGGTTTTTAA-TTT
1 AGGGTTTAGGGTTTTTAAGTT-AAGGGTTAGGGTTTTTAAGTTT
* * * *
9162539 AAGAGTTTAGGGTTTTTAGGTTAAGGGTTTAGGATTTTTAAG-AT
1 -AGGGTTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTT
**
9162583 AGGAGTTTAGGG--TTT-A--T--GGGTTAGTATTTTTAA-TTT
1 AGG-GTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
* *
9162619 AAGGGTTTAAGGTTTTTAATTTAAGGGTTAGGGTTTTTAA-TTT
1 -AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
* * * * * *
9162662 AAGAGATTATGGGTTTTTAGGTTAAGGGTTTAGGATTTTAAAGTTA
1 -AGGGTTTA-GGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTT
* *
9162708 AGAGTTTA-GG-ATTT-AG----GGGTTAGGGTTTTTAA-TTT
1 AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
* ** * * * *
9162743 AAGAGTTTAAGATTTTTTAGGTTAATGGTTTAGGGTTTTAAAGTTA
1 -AGGGTTT-AGGGTTTTTAAGTTAA-GGGTTAGGGTTTTTAAGTTT
* * **** * *
9162789 AGAGTTTAAGGTTTAGGGGTTAAAGGTTAGGG-TTTTAAATTT
1 AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
* * *
9162831 AAGGGTTTAAGGTGTTTAATTTAAGGGTTAGGGTTTTTAA-TTT
1 -AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
* * * * *
9162874 AAGAGG-TTAGAGGTTTTTAGGTTTAGGGTTTATGGTTTTAAAG-TA
1 -AG-GGTTTAG-GGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTT
* * * * * *
9162919 AAGTTTTATGG-TTTTAGGTTAGGGGTTA-AG-TTTTAA-TTT
1 AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
*
9162958 AAGGGTTTAGGG-TTTTAATTTAAGGGTTAGGGTTTTTAA-TTT
1 -AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
* * * * *
9163000 AAGAGATTAGGGTTTTTTATGTTAAGGGTTTAAGGTTTTAAAGTTT
1 -AGGGTTTAGGG-TTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTT
** *
9163046 AAAGTTTAGGG--TTT-AG----GGGTTAAGGTTTTTAA-TTT
1 AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
* * *
9163081 AAGGGTTTAGGGTTTTTTATTTAAGGGTTAGTGTTTTTAA-TTT
1 -AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
* * * * *
9163124 AAGAGTTTAGGGTTTTTAGGTTAAGGGTTTAGGATTTTAAAGTTA
1 -AGGGTTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTT
*
9163169 AGGG-TTAGGGTTTTTAGGTTAAGGG
1 AGGGTTTAGGGTTTTTAAGTTAAGGG
9163194 GTTTTAAGTT
Statistics
Matches: 892, Mismatches: 170, Indels: 146
0.74 0.14 0.12
Matches are distributed among these distances:
35 5 0.01
36 59 0.07
37 13 0.01
38 6 0.01
39 12 0.01
40 24 0.03
41 7 0.01
42 141 0.16
43 294 0.33
44 172 0.19
45 110 0.12
46 10 0.01
48 3 0.00
49 3 0.00
50 30 0.03
51 3 0.00
ACGTcount: A:0.25, C:0.01, G:0.29, T:0.45
Consensus pattern (43 bp):
AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
Found at i:9162676 original size:80 final size:80
Alignment explanation
Indices: 9162529--9162677 Score: 201
Period size: 80 Copynumber: 1.9 Consensus size: 80
9162519 AGGTTTAGGG
* * * *
9162529 TTTTTAATTTAAGAGTTTAGGGTTTTTAGGTTAAGGGTTTAGGATTTTTAAGATAGGAGTTTAGG
1 TTTTTAATTTAAGAGTTTAAGGTTTTTAAGTTAAGGGTTTAGGATTTTTAAGATAAGAGATTAGG
9162594 GTTTATGGGTTAGTA
66 GTTTATGGGTTAGTA
* * * **
9162609 TTTTTAATTTAAGGGTTTAAGGTTTTTAATTTAAGGG-TTAGGGTTTTTAATTTAAGAGATTATG
1 TTTTTAATTTAAGAGTTTAAGGTTTTTAAGTTAAGGGTTTAGGATTTTTAAGATAAGAGATTA-G
9162673 GGTTT
65 GGTTT
9162678 TTAGGTTAAG
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
79 20 0.34
80 39 0.66
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.48
Consensus pattern (80 bp):
TTTTTAATTTAAGAGTTTAAGGTTTTTAAGTTAAGGGTTTAGGATTTTTAAGATAAGAGATTAGG
GTTTATGGGTTAGTA
Found at i:9162679 original size:124 final size:124
Alignment explanation
Indices: 9162128--9162802 Score: 467
Period size: 128 Copynumber: 5.3 Consensus size: 124
9162118 AGGTTAAGGG
* * * * * * * *
9162128 TTAAGGGTTAAGGTTTTTAAGTTAAGGGTTTAAGGTTTTTTAGGTTAAGGGTCTAGGGTTTTAAA
1 TTAAGGTTTAGGGTTTTTAATTTAAGAGATT-AGGGTTTTTAGGTTAAGGGTTTAGGATTTTAAA
* * * **
9162193 GTTAAG-GTTTAGGGTTTTCAAGTTAGGGGTTAGGGTTTTTAGGTTAAGGGTTTAA-AGTTTTTA
65 GATAAGAGTTTA-GG------ATTTAGGGGTTAGGATTTTTAATTTAAGGGTTTAAGAGTTTTTA
9162256 AT
123 AT
* * * * * * * * *
9162258 TTAAGGGTTAAGGTTTTTCAGTTAATGA-TTTAGGG-TTTTAAGTCAAGGGTCTA-AAGTTTTAA
1 TTAAGGTTTAGGGTTTTTAATTTAA-GAGATTAGGGTTTTTAGGTTAAGGGTTTAGGA-TTTTAA
* * * ** *
9162320 AGTTAAG-GTTTAGGGTTTTTAGGTTAAGGGTTAGGGTTTTTAGGTTAAGGG-TT-AGTGTTTTT
64 AGATAAGAGTTTA-GG-ATTTA-G----GGGTTAGGATTTTTAATTTAAGGGTTTAAGAGTTTTT
9162382 AAT
122 AAT
* * * * * * * *
9162385 TTAAGGGTTAGGGTTTTAAAGTTAAGGGTTTAGGGTTTTAAAGTTAAGGGTCTATGG-TTTTAAA
1 TTAAGGTTTAGGGTTTTTAATTTAAGAGATTAGGGTTTTTAGGTTAAGGGTTTA-GGATTTTAAA
* ** * *
9162449 GTTAAG-GTTTAAGTTTTTCAAGTTAAGGGTTAGGGTTTTTAGGGTTT-AGGGTTT-AGAGTTTT
65 GATAAGAGTTT-AGGATTT--AG----GGGTTAGGATTTTTA--ATTTAAGGGTTTAAGAGTTTT
9162511 TAAT
121 TAAT
* *
9162515 TTAAAGGTTTAGGGTTTTTAATTTAAGAGTTTAGGGTTTTTAGGTTAAGGGTTTAGGATTTTTAA
1 TT-AAGGTTTAGGGTTTTTAATTTAAGAGATTAGGGTTTTTAGGTTAAGGGTTTAGGATTTTAAA
* * * *
9162580 GATAGGAGTTTAGGGTTTATGGGTTAGTATTTTTAATTTAAGGGTTTAAG-GTTTTTAAT
65 GATAAGAGTTTAGGATTTAGGGGTTAGGATTTTTAATTTAAGGGTTTAAGAGTTTTTAAT
*
9162639 TTAAGGGTTAGGGTTTTTAATTTAAGAGATTATGGGTTTTTAGGTTAAGGGTTTAGGATTTTAAA
1 TTAAGGTTTAGGGTTTTTAATTTAAGAGATTA-GGGTTTTTAGGTTAAGGGTTTAGGATTTTAAA
* * * * **
9162704 GTTAAGAGTTTAGGATTTAGGGGTTAGGGTTTTTAATTTAAGAGTTTAAGATTTTTTAGG
65 GATAAGAGTTTAGGATTTAGGGGTTAGGATTTTTAATTTAAGGGTTTAAGAGTTTTTAAT
* * * *
9162764 TTAATGGTTTAGGGTTTTAAAGTTAAGAGTTTAAGGTTT
1 TTAA-GGTTTAGGGTTTTTAATTTAAGAGATTAGGGTTT
9162803 AGGGGTTAAA
Statistics
Matches: 464, Mismatches: 55, Indels: 57
0.81 0.10 0.10
Matches are distributed among these distances:
123 34 0.07
124 93 0.20
125 30 0.06
126 26 0.06
127 44 0.09
128 115 0.25
129 10 0.02
130 47 0.10
131 61 0.13
132 4 0.01
ACGTcount: A:0.26, C:0.01, G:0.28, T:0.45
Consensus pattern (124 bp):
TTAAGGTTTAGGGTTTTTAATTTAAGAGATTAGGGTTTTTAGGTTAAGGGTTTAGGATTTTAAAG
ATAAGAGTTTAGGATTTAGGGGTTAGGATTTTTAATTTAAGGGTTTAAGAGTTTTTAAT
Found at i:9162734 original size:81 final size:79
Alignment explanation
Indices: 9162637--9163134 Score: 339
Period size: 81 Copynumber: 6.0 Consensus size: 79
9162627 AAGGTTTTTA
* *
9162637 ATTTAAGGGTTAGGGTTTTTAATTTAAGAGATTATGGGTTTTTAGGTTAAGGGTTTAGGATTTTA
1 ATTTAGGGGTTAGGGTTTTTAATTTAAGAGTTTA-GGGTTTTTAGGTTAAGGGTTTAGG-TTTTA
9162702 AAGTTAAGAGTTTAGG
64 AAGTTAAGAGTTTAGG
** *
9162718 ATTTAGGGGTTAGGGTTTTTAATTTAAGAGTTTAAGATTTTTTAGGTTAATGGTTTAGGGTTTTA
1 ATTTAGGGGTTAGGGTTTTTAATTTAAGAGTTT-AGGGTTTTTAGGTTAAGGGTTTA-GGTTTTA
9162783 AAGTTAAGAGTTTAAGG
64 AAGTTAAGAGTTT-AGG
* * * * **
9162800 -TTTAGGGGTTAAAGGTTAGGGTTTTAAATTTAAGGGTTTAAGGTGTTTAATTTAAGGG-TTAGG
1 ATTTA--GG-----GGTTAGGGTTTTTAATTTAAGAGTTTAGGGTTTTTAGGTTAAGGGTTTA-G
* * *
9162863 GTTTTTAATTTAAGAGGTTAGAGG
58 GTTTTAAAGTTAAGA-GTT-TAGG
* * *** * * *
9162887 TTTTTA-GGTTTAGGGTTTATGGTTTTAAAGTAAAGTTTTATGG-TTTTAGGTT-AGGGGTTAAG
1 -ATTTAGGGGTTAGGGTTT-TTAATTT-AAG---AG-TTTAGGGTTTTTAGGTTAAGGGTTTAGG
* *
9162949 TTTT-AATTTAAGGGTTTAGGG
59 TTTTAAAGTTAAGAGTTTA-GG
* * *
9162970 TTTTAATTTAAGGGTTAGGGTTTTTAATTTAAGAGATTAGGGTTTTTTATGTTAAGGGTTTAAGG
1 -----ATTTAGGGGTTAGGGTTTTTAATTTAAGAGTTTAGGG-TTTTTAGGTTAAGGGTTT-AGG
9163035 TTTTAAAGTTTAA-AGTTTAGG
59 TTTTAAAG-TTAAGAGTTTAGG
* * * * *
9163056 GTTTAGGGGTTAAGGTTTTTAATTTAAGGGTTTAGGGTTTTTTA-TTTAAGGG-TTAGTGTTTTT
1 ATTTAGGGGTTAGGGTTTTTAATTTAAGAGTTTAGGG-TTTTTAGGTTAAGGGTTTAG-GTTTTA
*
9163119 AATTTAAGAGTTTAGG
64 AAGTTAAGAGTTTAGG
9163135 GTTTTTAGGT
Statistics
Matches: 332, Mismatches: 50, Indels: 72
0.73 0.11 0.16
Matches are distributed among these distances:
78 6 0.02
79 17 0.05
80 7 0.02
81 121 0.36
82 16 0.05
83 12 0.04
84 16 0.05
85 15 0.05
86 40 0.12
87 39 0.12
88 39 0.12
89 4 0.01
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.46
Consensus pattern (79 bp):
ATTTAGGGGTTAGGGTTTTTAATTTAAGAGTTTAGGGTTTTTAGGTTAAGGGTTTAGGTTTTAAA
GTTAAGAGTTTAGG
Found at i:9162745 original size:36 final size:36
Alignment explanation
Indices: 9162677--9162810 Score: 101
Period size: 36 Copynumber: 3.5 Consensus size: 36
9162667 ATTATGGGTT
* *
9162677 TTTAGG-TTAAGGGTTTAGGATTTTAAAGTTAAGAG
1 TTTAGGATTTAGGGGTTAGGATTTTAAAGTTAAGAG
* * *
9162712 TTTAGGATTTAGGGGTTAGGGTTTTTAATTTAAGAG
1 TTTAGGATTTAGGGGTTAGGATTTTAAAGTTAAGAG
* *
9162748 TTTAAGATTTTTTAGGTTAATGGTTTAGGGTTTTAAAGTTAAGAG
1 TTTAGGA---TTTAGG-----GG-TTAGGATTTTAAAGTTAAGAG
9162793 TTTAAGG-TTTAGGGGTTA
1 TTT-AGGATTTAGGGGTTA
9162811 AAGGTTAGGG
Statistics
Matches: 79, Mismatches: 9, Indels: 21
0.72 0.08 0.19
Matches are distributed among these distances:
35 6 0.08
36 33 0.42
37 2 0.03
39 6 0.08
42 6 0.08
44 2 0.03
45 22 0.28
46 2 0.03
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.44
Consensus pattern (36 bp):
TTTAGGATTTAGGGGTTAGGATTTTAAAGTTAAGAG
Found at i:9162832 original size:212 final size:202
Alignment explanation
Indices: 9162523--9162924 Score: 565
Period size: 212 Copynumber: 1.9 Consensus size: 202
9162513 ATTTAAAGGT
* * *
9162523 TTAGGGTTTTTAATTTAAGAGTTTAGGGTTTTTAGGTTAAGGGTTTAGGATTTTTAAGATAGGAG
1 TTAGGGTTTTTAATTTAAGAGTTTAGAGTTTTTAGGTTAAGGGTTTAGGATTTTAAAGATAAGAG
* * * *
9162588 TTTAGGGTTTATGGGTTAGTATTTTTAATTTAAGGGTTTAAGGTTTTTAATTTAAGGGTTAGGGT
66 TTTAAGGTTTAGGGGTTAGTATTTTAAATTTAAGGGTTTAAGGTGTTTAATTTAAGGGTTAGGGT
9162653 TTTTAATTTAAGAGATTATG-GGTTTTTAGGTTAAGGGTTTA-GGATTTTAAAGTTAAGAGTTTA
131 TTTTAATTTAAGAGATTA-GAGGTTTTTAGGTTAAGGGTTTATGG-TTTTAAAG-TAA-AGTTTA
9162716 GGATTTAGGGG
192 GGATTTAGGGG
* * * *
9162727 TTAGGGTTTTTAATTTAAGAGTTTAAGATTTTTTAGGTTAATGGTTTAGGGTTTTAAAGTTAAGA
1 TTAGGGTTTTTAATTTAAGAGTTT-AGAGTTTTTAGGTTAAGGGTTTAGGATTTTAAAGATAAGA
9162792 GTTTAAGGTTTAGGGGTTAAAGGTTAGGGTTTTAAATTTAAGGGTTTAAGGTGTTTAATTTAAGG
65 GTTTAAGGTTTAGGGGTT--A-G-TA---TTTTAAATTTAAGGGTTTAAGGTGTTTAATTTAAGG
* *
9162857 GTTAGGGTTTTTAATTTAAGAGGTTAGAGGTTTTTAGGTTTAGGGTTTATGGTTTTAAAGTAAAG
123 GTTAGGGTTTTTAATTTAAGAGATTAGAGGTTTTTAGGTTAAGGGTTTATGGTTTTAAAGTAAAG
9162922 TTT
188 TTT
9162925 TATGGTTTTA
Statistics
Matches: 175, Mismatches: 13, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
204 24 0.14
205 49 0.28
207 1 0.01
208 1 0.01
209 2 0.01
210 5 0.03
211 4 0.02
212 87 0.50
213 2 0.01
ACGTcount: A:0.27, C:0.00, G:0.28, T:0.46
Consensus pattern (202 bp):
TTAGGGTTTTTAATTTAAGAGTTTAGAGTTTTTAGGTTAAGGGTTTAGGATTTTAAAGATAAGAG
TTTAAGGTTTAGGGGTTAGTATTTTAAATTTAAGGGTTTAAGGTGTTTAATTTAAGGGTTAGGGT
TTTTAATTTAAGAGATTAGAGGTTTTTAGGTTAAGGGTTTATGGTTTTAAAGTAAAGTTTAGGAT
TTAGGGG
Found at i:9163069 original size:36 final size:36
Alignment explanation
Indices: 9163024--9163095 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
9163014 TTTTATGTTA
*
9163024 AGGGTTTAAGGTTTTAAAGTTTAA-AGTTTAGGGTTT
1 AGGGGTTAAGGTTTTAAA-TTTAAGAGTTTAGGGTTT
* *
9163060 AGGGGTTAAGGTTTTTAATTTAAGGGTTTAGGGTTT
1 AGGGGTTAAGGTTTTAAATTTAAGAGTTTAGGGTTT
9163096 TTTATTTAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
35 5 0.16
36 27 0.84
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (36 bp):
AGGGGTTAAGGTTTTAAATTTAAGAGTTTAGGGTTT
Found at i:9163085 original size:29 final size:29
Alignment explanation
Indices: 9163010--9163092 Score: 80
Period size: 29 Copynumber: 2.8 Consensus size: 29
9163000 AAGAGATTAG
* **
9163010 GGTTTTTTATGTTAAGGGTTTAAGGTTTTAA
1 GGTTTTTAAT-TTAAGGGTTT-AGGGGTTAA
* *
9163041 AG-TTTAAAGTTT-AGGGTTTAGGGGTTAA
1 GGTTTTTAA-TTTAAGGGTTTAGGGGTTAA
9163069 GGTTTTTAATTTAAGGGTTTAGGG
1 GGTTTTTAATTTAAGGGTTTAGGG
9163093 TTTTTTATTT
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
28 11 0.26
29 23 0.55
30 6 0.14
31 2 0.05
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (29 bp):
GGTTTTTAATTTAAGGGTTTAGGGGTTAA
Found at i:9163197 original size:16 final size:15
Alignment explanation
Indices: 9163175--9163208 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
9163165 GTTAAGGGTT
* *
9163175 AGGGTTTTTAGGTTA
1 AGGGGTTTTAAGTTA
9163190 AGGGGTTTTAAGTTA
1 AGGGGTTTTAAGTTA
9163205 AGGG
1 AGGG
9163209 TTAGGGTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.38, T:0.38
Consensus pattern (15 bp):
AGGGGTTTTAAGTTA
Found at i:9163198 original size:15 final size:14
Alignment explanation
Indices: 9163171--9163244 Score: 64
Period size: 14 Copynumber: 5.3 Consensus size: 14
9163161 TAAAGTTAAG
9163171 GGTT-AGGGTTTTTA
1 GGTTAAGGG-TTTTA
9163185 GGTTAAGGGGTTTTA
1 GGTTAA-GGGTTTTA
*
9163200 AGTTAAGGG--TTA
1 GGTTAAGGGTTTTA
* *
9163212 GGGTTATGGTTTTTA
1 -GGTTAAGGGTTTTA
*
9163227 GGTTAAGGGTTTAA
1 GGTTAAGGGTTTTA
9163241 GGTT
1 GGTT
9163245 TATGTATTTA
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
12 3 0.06
13 6 0.12
14 22 0.46
15 14 0.29
16 3 0.06
ACGTcount: A:0.20, C:0.00, G:0.36, T:0.43
Consensus pattern (14 bp):
GGTTAAGGGTTTTA
Found at i:9163210 original size:36 final size:39
Alignment explanation
Indices: 9163072--9163216 Score: 127
Period size: 43 Copynumber: 3.6 Consensus size: 39
9163062 GGGTTAAGGT
* * *
9163072 TTTTAATTTAAGGGTTTAGGGTTTTTTA-TTTAAGGGTTAGTGT
1 TTTTAAGTTAAGGG-TTAGGG-TTTTTAGGTTAAGGG-T-G-GA
* *
9163115 TTTTAATTTAAGAGTTTAGGGTTTTTAGGTTAAGGGTTTAGGA
1 TTTTAAGTTAAG-GGTTAGGGTTTTTAGGTTAAGGG--T-GGA
9163158 TTTTAAAGTTAAGGGTTAGGGTTTTTAGGTTAA-GG-GG-
1 TTTT-AAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTGGA
9163195 TTTTAAGTTAAGGGTTAGGGTT
1 TTTTAAGTTAAGGGTTAGGGTT
9163217 ATGGTTTTTA
Statistics
Matches: 93, Mismatches: 5, Indels: 15
0.82 0.04 0.13
Matches are distributed among these distances:
36 18 0.19
37 4 0.04
38 2 0.02
42 8 0.09
43 49 0.53
44 12 0.13
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (39 bp):
TTTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTGGA
Found at i:9163212 original size:27 final size:27
Alignment explanation
Indices: 9163185--9163237 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
9163175 AGGGTTTTTA
9163185 GGTTAAGGGGTTTTAAGTTAAGGGTTAG
1 GGTT-AGGGGTTTTAAGTTAAGGGTTAG
* * *
9163213 GGTTATGGTTTTTAGGTTAAGGGTT
1 GGTTAGGGGTTTTAAGTTAAGGGTT
9163238 TAAGGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 18 0.82
28 4 0.18
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.42
Consensus pattern (27 bp):
GGTTAGGGGTTTTAAGTTAAGGGTTAG
Found at i:9165479 original size:51 final size:51
Alignment explanation
Indices: 9165424--9165521 Score: 144
Period size: 51 Copynumber: 1.9 Consensus size: 51
9165414 AATTATTTAA
9165424 AAATAGGGATTTAAGAGAAATTTA-AGAGGAACTTGAGAGCAAATTGAAAAT
1 AAATAGGGATTTAAGAGAAATTTAGA-AGGAACTTGAGAGCAAATTGAAAAT
* * * *
9165475 AAATATGGATTTGAGAGAAATTTTGAAGGAATTTGAGAGCAAATTGA
1 AAATAGGGATTTAAGAGAAATTTAGAAGGAACTTGAGAGCAAATTGA
9165522 GAGGAAATTT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 41 0.98
52 1 0.02
ACGTcount: A:0.46, C:0.03, G:0.24, T:0.27
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAATTTAGAAGGAACTTGAGAGCAAATTGAAAAT
Found at i:9165497 original size:11 final size:11
Alignment explanation
Indices: 9165483--9165559 Score: 72
Period size: 11 Copynumber: 6.9 Consensus size: 11
9165473 ATAAATATGG
9165483 ATTTGAGAGAA
1 ATTTGAGAGAA
*
9165494 ATTTTGA-AGGA
1 A-TTTGAGAGAA
9165505 ATTTGAGAGCAA
1 ATTTGAGAG-AA
9165517 A-TTGAGAGGAA
1 ATTTGAGA-GAA
9165528 ATTT-AGAAGAA
1 ATTTGAG-AGAA
9165539 A-TTGAGAGAAA
1 ATTTGAGAG-AA
9165550 ATTTGAGAGA
1 ATTTGAGAGA
9165560 GGATTAGTTT
Statistics
Matches: 55, Mismatches: 2, Indels: 18
0.73 0.03 0.24
Matches are distributed among these distances:
10 9 0.16
11 28 0.51
12 18 0.33
ACGTcount: A:0.45, C:0.01, G:0.27, T:0.26
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:9165522 original size:33 final size:33
Alignment explanation
Indices: 9165483--9165559 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 33
9165473 ATAAATATGG
* * *
9165483 ATTTGAGAGAAATTTTGAAGGAATTTGAGAGCAA
1 ATTTGAGAGAAATTTAGAA-GAAATTGAGAGAAA
9165517 A-TTGAGAGGAAATTTAGAAGAAATTGAGAGAAA
1 ATTTGAGA-GAAATTTAGAAGAAATTGAGAGAAA
9165550 ATTTGAGAGA
1 ATTTGAGAGA
9165560 GGATTAGTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
33 21 0.55
34 17 0.45
ACGTcount: A:0.45, C:0.01, G:0.27, T:0.26
Consensus pattern (33 bp):
ATTTGAGAGAAATTTAGAAGAAATTGAGAGAAA
Found at i:9166994 original size:25 final size:24
Alignment explanation
Indices: 9166966--9167018 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
9166956 GTTAAGTTGT
9166966 ATAATATTTAAATAATTTAATATAA
1 ATAATATTT-AATAATTTAATATAA
* *
9166991 ATAATCTTTAATTATTTAATATAA
1 ATAATATTTAATAATTTAATATAA
9167015 ATAA
1 ATAA
9167019 AAACATTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 18 0.69
25 8 0.31
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (24 bp):
ATAATATTTAATAATTTAATATAA
Found at i:9168760 original size:38 final size:35
Alignment explanation
Indices: 9168682--9168761 Score: 90
Period size: 39 Copynumber: 2.2 Consensus size: 35
9168672 TTCTTTTATG
* *
9168682 TTCTCTTAGCTTTCCTTTTTTTTCTTCATTTTCCA
1 TTCTCTTAGCTTTCCTTTTTTTTCTCCATTCTCCA
*
9168717 TTCTCTTATGCTTTTCCCTCTTTTTTTCTCCCTTCTCCA
1 TTCTCTTA-GC-TTT-CCT-TTTTTTTCTCCATTCTCCA
9168756 -TCTCTT
1 TTCTCTT
9168762 TTAACATGGT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
35 8 0.21
36 2 0.05
37 3 0.08
38 9 0.24
39 16 0.42
ACGTcount: A:0.06, C:0.31, G:0.03, T:0.60
Consensus pattern (35 bp):
TTCTCTTAGCTTTCCTTTTTTTTCTCCATTCTCCA
Found at i:9171038 original size:43 final size:44
Alignment explanation
Indices: 9170933--9171045 Score: 126
Period size: 44 Copynumber: 2.6 Consensus size: 44
9170923 TGTGTTGTCG
** **
9170933 TGTAAGACCACATCTGGGACGTTGGCATCGACTTGTGATTTATG
1 TGTAAGACCATGTCTGGGACGTTGGCATCGACTTGTGATTTACA
9170977 TGTAAGATCC-TGTCTGGGACAG-TGGCATCGA-TATGTGA-TTACA
1 TGTAAGA-CCATGTCTGGGAC-GTTGGCATCGACT-TGTGATTTACA
*
9171020 TGTAAGACCATGTCTGGGACGATGGC
1 TGTAAGACCATGTCTGGGACGTTGGC
9171046 GTTGTACGAA
Statistics
Matches: 60, Mismatches: 4, Indels: 11
0.80 0.05 0.15
Matches are distributed among these distances:
42 3 0.05
43 25 0.42
44 29 0.48
45 3 0.05
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCGACTTGTGATTTACA
Found at i:9171701 original size:19 final size:19
Alignment explanation
Indices: 9171677--9171766 Score: 162
Period size: 19 Copynumber: 4.7 Consensus size: 19
9171667 AATCTTCAAG
9171677 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
9171696 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
9171715 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
9171734 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
9171753 GATATGCAATCTTA
1 GATATGCAATCTTA
9171767 AAAGATATGA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 67 1.00
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:9171721 original size:38 final size:38
Alignment explanation
Indices: 9171677--9171766 Score: 180
Period size: 38 Copynumber: 2.4 Consensus size: 38
9171667 AATCTTCAAG
9171677 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
9171715 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
9171753 GATATGCAATCTTA
1 GATATGCAATCTTA
9171767 AAAGATATGA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 52 1.00
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.39
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
Found at i:9172251 original size:6 final size:6
Alignment explanation
Indices: 9172240--9172295 Score: 58
Period size: 6 Copynumber: 9.3 Consensus size: 6
9172230 ATTAATCTTG
* * * * *
9172240 TATCAT TATCAT TATCAT CATCAT CATCAT TATTAT TATTAT TATTAT
1 TATCAT TATCAT TATCAT TATCAT TATCAT TATCAT TATCAT TATCAT
*
9172288 TATTAT TA
1 TATCAT TA
9172296 ATTTTATATT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 47 1.00
ACGTcount: A:0.34, C:0.12, G:0.00, T:0.54
Consensus pattern (6 bp):
TATCAT
Found at i:9172274 original size:3 final size:3
Alignment explanation
Indices: 9172268--9172295 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
9172258 CATCATCATC
9172268 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
9172296 ATTTTATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:9173965 original size:23 final size:23
Alignment explanation
Indices: 9173935--9174258 Score: 342
Period size: 23 Copynumber: 13.8 Consensus size: 23
9173925 TTCGATTCAA
9173935 GTCCAATTTGGTGTATAAATGCT
1 GTCCAATTTGGTGTATAAATGCT
*
9173958 GTCCAATTTGGTGTATATATGCT
1 GTCCAATTTGGTGTATAAATGCT
* * *
9173981 GTCCAATTTTAGTGTAAAAATCCT
1 GTCCAA-TTTGGTGTATAAATGCT
* * *
9174005 ATCCAATTTGGTATATATATGCT
1 GTCCAATTTGGTGTATAAATGCT
* *
9174028 GCCCAATTTGGTGTATATATGCT
1 GTCCAATTTGGTGTATAAATGCT
*
9174051 GTCCAATTTTGGTGTAAAAATGCT
1 GTCCAA-TTTGGTGTATAAATGCT
* * * *
9174075 GCCCAATTTGGTGTCTATATGCA
1 GTCCAATTTGGTGTATAAATGCT
* *
9174098 CTCCAATTTTGGTGTAAAAATGCT
1 GTCCAA-TTTGGTGTATAAATGCT
* *
9174122 GTCCAATTTGATATATATATATGCT
1 GTCCAATTTGGTGTATA-A-ATGCT
* *
9174147 GCCCAATTTGGTGTATATATGCT
1 GTCCAATTTGGTGTATAAATGCT
*
9174170 GTCCAATTTTGGTGTACAAATGCT
1 GTCCAA-TTTGGTGTATAAATGCT
* *
9174194 GTCCAATTTGGTGTTTATATGCT
1 GTCCAATTTGGTGTATAAATGCT
** *
9174217 GTCCAAATGGGGTGTATAAATGTT
1 GTCC-AATTTGGTGTATAAATGCT
*
9174241 GTCCAATTTGATGTATAA
1 GTCCAATTTGGTGTATAA
9174259 GAGCTGTTCA
Statistics
Matches: 244, Mismatches: 50, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
23 129 0.53
24 96 0.39
25 19 0.08
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.40
Consensus pattern (23 bp):
GTCCAATTTGGTGTATAAATGCT
Found at i:9174010 original size:47 final size:46
Alignment explanation
Indices: 9173935--9174257 Score: 358
Period size: 47 Copynumber: 6.9 Consensus size: 46
9173925 TTCGATTCAA
9173935 GTCCAATTTGGTGTATAAATGCTGTCCAATTTGGTGTATATATGCT
1 GTCCAATTTGGTGTATAAATGCTGTCCAATTTGGTGTATATATGCT
* * * * *
9173981 GTCCAATTTTAGTGTAAAAATCCTATCCAATTTGGTATATATATGCT
1 GTCCAA-TTTGGTGTATAAATGCTGTCCAATTTGGTGTATATATGCT
* * * *
9174028 GCCCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTAAAAATGCT
1 GTCCAATTTGGTGTATAAATGCTGTCCAA-TTTGGTGTATATATGCT
* * * ** * *
9174075 GCCCAATTTGGTGTCTATATGCACTCCAATTTTGGTGTAAAAATGCT
1 GTCCAATTTGGTGTATAAATGCTGTCCAA-TTTGGTGTATATATGCT
* * *
9174122 GTCCAATTTGATATATATATATGCTGCCCAATTTGGTGTATATATGCT
1 GTCCAATTTGGTGTATA-A-ATGCTGTCCAATTTGGTGTATATATGCT
* *
9174170 GTCCAATTTTGGTGTACAAATGCTGTCCAATTTGGTGTTTATATGCT
1 GTCCAA-TTTGGTGTATAAATGCTGTCCAATTTGGTGTATATATGCT
** * *
9174217 GTCCAAATGGGGTGTATAAATGTTGTCCAATTTGATGTATA
1 GTCC-AATTTGGTGTATAAATGCTGTCCAATTTGGTGTATA
9174258 AGAGCTGTTC
Statistics
Matches: 233, Mismatches: 38, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
46 24 0.10
47 169 0.73
48 24 0.10
49 16 0.07
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.40
Consensus pattern (46 bp):
GTCCAATTTGGTGTATAAATGCTGTCCAATTTGGTGTATATATGCT
Found at i:9174027 original size:70 final size:71
Alignment explanation
Indices: 9173937--9174202 Score: 340
Period size: 70 Copynumber: 3.8 Consensus size: 71
9173927 CGATTCAAGT
* *
9173937 CCAATTTGGTGTATAAATGCTGTCCAA-TTTGGTGTATATATGCTGTCCAATTTTAGTGTAAAAA
1 CCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTATAAATGCTGTCCAATTTTAGTGTAAAAA
* **
9174001 TCCTAT
66 TGCTGC
* * * *
9174007 CCAATTTGGTATATATATGCTGCCCAA-TTTGGTGTATATATGCTGTCCAATTTTGGTGTAAAAA
1 CCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTATAAATGCTGTCCAATTTTAGTGTAAAAA
9174071 TGCTGC
66 TGCTGC
* ** * * *
9174077 CCAATTTGGTGTCTATATGCACTCCAATTTTGGTGTAAAAATGCTGTCCAATTTGATA-TATATA
1 CCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTATAAATGCTGTCCAATTT--TAGTGTAAA
*
9174141 TATGCTGC
64 AATGCTGC
*
9174149 CCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTACAAATGCTGTCCAATTT
1 CCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTATAAATGCTGTCCAATTT
9174203 GGTGTTTATA
Statistics
Matches: 171, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
70 85 0.50
71 24 0.14
72 61 0.36
73 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (71 bp):
CCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTATAAATGCTGTCCAATTTTAGTGTAAAAA
TGCTGC
Found at i:9174182 original size:119 final size:119
Alignment explanation
Indices: 9173935--9174257 Score: 481
Period size: 119 Copynumber: 2.7 Consensus size: 119
9173925 TTCGATTCAA
* *
9173935 GTCCAA-TTTGGTGTATAAATGCTGTCCAATTTGGTGTATATATGCTGTCCAATTTTAGTGTAAA
1 GTCCAATTTTGGTGTAAAAATGCTGTCCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTAAA
* *
9173999 AATCCTATCCAATTTG--GTATATATATGCTGCCCAATTTGGTGTATATATGCT
66 AATGCTGTCCAATTTGATGTATATATATGCTGCCCAATTTGGTGTATATATGCT
* * **
9174051 GTCCAATTTTGGTGTAAAAATGCTGCCCAATTTGGTGTCTATATGCACTCCAATTTTGGTGTAAA
1 GTCCAATTTTGGTGTAAAAATGCTGTCCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTAAA
*
9174116 AATGCTGTCCAATTTGATATATATATATGCTGCCCAATTTGGTGTATATATGCT
66 AATGCTGTCCAATTTGATGTATATATATGCTGCCCAATTTGGTGTATATATGCT
* * * ** *
9174170 GTCCAATTTTGGTGTACAAATGCTGTCCAATTTGGTGTTTATATGCTGTCCAAATGGGGTGTATA
1 GTCCAATTTTGGTGTAAAAATGCTGTCCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTAAA
*
9174235 AATGTTGTCCAATTTGATGTATA
66 AATGCTGTCCAATTTGATGTATA
9174258 AGAGCTGTTC
Statistics
Matches: 184, Mismatches: 20, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
116 6 0.03
117 66 0.36
119 112 0.61
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.40
Consensus pattern (119 bp):
GTCCAATTTTGGTGTAAAAATGCTGTCCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTAAA
AATGCTGTCCAATTTGATGTATATATATGCTGCCCAATTTGGTGTATATATGCT
Found at i:9175091 original size:42 final size:42
Alignment explanation
Indices: 9174981--9175290 Score: 284
Period size: 42 Copynumber: 7.2 Consensus size: 42
9174971 GTTTACAAAC
* * *
9174981 AAAAACGCCGCTAAAGACCATGTTCTTTCGCGGCGTTTGTAAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTGT-AA
* *
9175024 AAAAACGCCGCTAAATACCATGTTCTTTAGCGGCGCTTGTAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTGTAA
* * *
9175066 AAAAACGCCGCTAAAGACCACGTTCTTTAGAGGCGCTTAG-AA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTT-GTAA
9175108 AAAAACGCCGCTAAAGAACATGTTCTTTAGCTAGCGGCGC-T-TAA
1 AAAAACGCCGCTAAAGAACATGTTC-TT---TAGCGGCGCTTGTAA
* * * **
9175152 GGAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTT
1 --AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTGTAA
* * * * * **
9175196 ACAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTT
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTGTAA
* * * * *
9175238 ACAAACGCCGCGAAAGAACATATTCTTTAGTGGCGCTTTTATA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTGTA-A
9175281 CAAAAACGCC
1 -AAAAACGCC
9175291 ACTATTTTGG
Statistics
Matches: 229, Mismatches: 26, Indels: 23
0.82 0.09 0.08
Matches are distributed among these distances:
42 142 0.62
43 41 0.18
44 11 0.05
45 3 0.01
46 32 0.14
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.26
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTGTAA
Found at i:9175179 original size:88 final size:87
Alignment explanation
Indices: 9174981--9175226 Score: 279
Period size: 88 Copynumber: 2.8 Consensus size: 87
9174971 GTTTACAAAC
* * *
9174981 AAAAACGCCGCTAAAGACCATGTTCTTTCGCGGCGTTTGTAAAAAAAACGCCGCTAAATACCATG
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGTTTG--AAAAAAACGCCGCTAAAGAACATG
9175046 TTC-TT---TAGCGGCGCTTGTAA
64 TTCTTTAGCTAGCGGCGCTTGTAA
* * *
9175066 AAAAACGCCGCTAAAGACCACGTTCTTTAGAGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCG-TTTGAAAAAAACGCCGCTAAAGAACATGT
9175131 TCTTTAGCTAGCGGCGC-T-TAA
65 TCTTTAGCTAGCGGCGCTTGTAA
* *** * *
9175152 GGAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTTACAAGCGCCGCTAAAGAACAT
1 --AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCG-TTTGAAAAAAACGCCGCTAAAGAACAT
*
9175217 GGTCTTTAGC
63 GTTCTTTAGC
9175227 GGCGTTTTTT
Statistics
Matches: 137, Mismatches: 17, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
84 25 0.18
85 34 0.25
86 6 0.04
87 1 0.01
88 71 0.52
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (87 bp):
AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGTTTGAAAAAAACGCCGCTAAAGAACATGTT
CTTTAGCTAGCGGCGCTTGTAA
Found at i:9175211 original size:130 final size:129
Alignment explanation
Indices: 9174981--9175267 Score: 312
Period size: 130 Copynumber: 2.2 Consensus size: 129
9174971 GTTTACAAAC
* * *
9174981 AAAAACGCCGCTAAAGACCATGTTCTTT--CGCGGCGTTTGTAAAAAAAACGCCGCTAAATACCA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGCGGCGTCTGTAAAAAAAACGCCGCTAAAGACCA
* *
9175044 TGTTCTTTAGCGGCGCTTGTAAAAAAACGCCGCTAAAGACCACGTTCTTTAGAGGCGCTTAGAA
66 TGTTCTTTAGCGGCGCTTGTAAAAAAACGCCGCTAAAGAACACGGTCTTTAGAGGCGCTTAGAA
*
9175108 AAAAACGCCGCTAAAGAACATGTTCTTTAGCTAGCGGCG-CT-TAAGGAAAAACGCCGCTAAAGA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGC--GCGGCGTCTGTAA-AAAAAACGCCGCTAAAGA
* * * ** * * * * * **
9175171 TCATGTTCTTTAGCGGCGTTTTTTTACAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTT
63 CCATGTTCTTTAGCGGCGCTTGTAAAAAAACGCCGCTAAAGAACACGGTCTTTAGAGGCGCTTAG
**
9175236 TT
128 AA
* * *
9175238 ACAAACGCCGCGAAAGAACATATTCTTTAG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAG
9175268 TGGCGCTTTT
Statistics
Matches: 132, Mismatches: 23, Indels: 7
0.81 0.14 0.04
Matches are distributed among these distances:
127 27 0.20
129 4 0.03
130 95 0.72
131 6 0.05
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (129 bp):
AAAAACGCCGCTAAAGAACATGTTCTTTAGCGCGGCGTCTGTAAAAAAAACGCCGCTAAAGACCA
TGTTCTTTAGCGGCGCTTGTAAAAAAACGCCGCTAAAGAACACGGTCTTTAGAGGCGCTTAGAA
Found at i:9175668 original size:21 final size:21
Alignment explanation
Indices: 9175600--9175670 Score: 97
Period size: 21 Copynumber: 3.4 Consensus size: 21
9175590 TTTTGCTCTG
*
9175600 CTCTGCTTCTCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
*
9175621 CTCCGCTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* * *
9175642 CGCTGCTTCCCTCGCTTCCGC
1 CTCTGCTTCCCTCGCTGCAGC
9175663 CTCTGCTT
1 CTCTGCTT
9175671 TAAGTTGTAG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.03, C:0.48, G:0.18, T:0.31
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:9183230 original size:18 final size:18
Alignment explanation
Indices: 9183209--9183711 Score: 164
Period size: 18 Copynumber: 27.6 Consensus size: 18
9183199 GTTATGTAAG
* *
9183209 TTATGTAACTCAAATGTA
1 TTATGTAAGTTAAATGTA
*
9183227 TTATGTAAGTTACCATGTA
1 TTATGTAAGTTA-AATGTA
*
9183246 TTATGTAAGTTAGATGTA
1 TTATGTAAGTTAAATGTA
*
9183264 TTATGTAAG-TATTATGTAA
1 TTATGTAAGTTA-AATGT-A
* *
9183283 GT-TGTAAGTTATTATGTA
1 TTATGTAAGTTA-AATGTA
9183301 TTAAGGAAGTTGTAAGTTAAATGTA
1 TT-----A--TGTAAGTTAAATGTA
* *
9183326 TTGTGTAAGTTGTAA-GTTA
1 TTATGTAAGTT-AAATG-TA
9183345 TTATGT-A-TT--ATGTAA
1 TTATGTAAGTTAAATGT-A
*
9183360 GT-TGTAAGTTAAATGTATTA
1 TTATGTAAGTTAAATG---TA
9183380 TGTAAGTTGTAAGTTAAATGTA
1 T-T-A--TGTAAGTTAAATGTA
*
9183402 TTATGTAAGTTGTAA-GTTA
1 TTATGTAAGTT-AAATG-TA
9183421 TTATGT-A-TT--ATGTAA
1 TTATGTAAGTTAAATGT-A
*
9183436 GT-TGTAAGTTAAATGTA
1 TTATGTAAGTTAAATGTA
*
9183453 TTATGTAAGTTGTAA-GTTA
1 TTATGTAAGTT-AAATG-TA
9183472 TTATGT-A-TT--ATGTAA
1 TTATGTAAGTTAAATGT-A
*
9183487 GT-TG-AAGTTAAATGTA
1 TTATGTAAGTTAAATGTA
* *
9183503 TTGTGTAAGTTGTAA-GTTA
1 TTATGTAAGTT-AAATG-TA
9183522 TTATGT-A-TT--ATGTAA
1 TTATGTAAGTTAAATGT-A
*
9183537 GT-TGTAAGTTAAATGTA
1 TTATGTAAGTTAAATGTA
9183554 TTATGTAAGTTAAATGTA
1 TTATGTAAGTTAAATGTA
*
9183572 TTATGTAAGTTGTAA-GTTA
1 TTATGTAAGTT-AAATG-TA
9183591 TTATGT-A-TT--ATGTAA
1 TTATGTAAGTTAAATGT-A
*
9183606 GT-TGTAAGTTAAATGTA
1 TTATGTAAGTTAAATGTA
9183623 TTGTGTAAGTTGTAAGTTAAATGTA
1 ---T-T-A--TGTAAGTTAAATGTA
*
9183648 TTATGTAAGTTGTAA-GTTA
1 TTATGTAAGTT-AAATG-TA
9183667 TTATGT-A-TT--ATGTAA
1 TTATGTAAGTTAAATGT-A
9183682 GTTATGTAAGTTAAATGTA
1 -TTATGTAAGTTAAATGTA
9183701 TTATGTAAGTT
1 TTATGTAAGTT
9183712 GTAAGTTATT
Statistics
Matches: 377, Mismatches: 27, Indels: 162
0.67 0.05 0.29
Matches are distributed among these distances:
14 27 0.07
15 23 0.06
16 16 0.04
17 26 0.07
18 139 0.37
19 86 0.23
20 7 0.02
21 5 0.01
22 4 0.01
25 35 0.09
26 9 0.02
ACGTcount: A:0.34, C:0.01, G:0.20, T:0.46
Consensus pattern (18 bp):
TTATGTAAGTTAAATGTA
Found at i:9183246 original size:19 final size:18
Alignment explanation
Indices: 9183222--9183273 Score: 86
Period size: 19 Copynumber: 2.8 Consensus size: 18
9183212 TGTAACTCAA
9183222 ATGTATTATGTAAGTTACC
1 ATGTATTATGTAAGTTA-C
*
9183241 ATGTATTATGTAAGTTAG
1 ATGTATTATGTAAGTTAC
9183259 ATGTATTATGTAAGT
1 ATGTATTATGTAAGT
9183274 ATTATGTAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
18 15 0.47
19 17 0.53
ACGTcount: A:0.33, C:0.04, G:0.19, T:0.44
Consensus pattern (18 bp):
ATGTATTATGTAAGTTAC
Found at i:9183348 original size:51 final size:51
Alignment explanation
Indices: 9183230--9183730 Score: 695
Period size: 51 Copynumber: 9.9 Consensus size: 51
9183220 AAATGTATTA
* * *
9183230 TGTAAGTTACCATGTATTATGTAAGTTAG-ATGTATTATGTAAGTATTATGTAAGT
1 TGTAAGTTA-AATGTATTATGTAAGTT-GTAAG--TTAT-TATGTATTATGTAAGT
* * * * *
9183285 TGTAAGTTATTATGTATTAAGGAAGTTGTAAGTTA-AATGTATTGTGTAAGT
1 TGTAAGTTA-AATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGT
* *
9183336 TGTAAGTTATTATGTATTATGTAAGTTGTAAGTTA-AATGTATTATGTAAGT
1 TGTAAGTTA-AATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGT
9183387 TGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGT
1 TGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGT
9183438 TGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGT
1 TGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGT
*
9183489 TG-AAGTTAAATGTATTGTGTAAGTTGTAAGTTATTATGTATTATGTAAGT
1 TGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGT
9183539 TGTAAGTTAAATGTATTATGTAAG-T-T-A---A--ATGTATTATGTAAGT
1 TGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGT
* * *
9183582 TGTAAGTTATTATGTATTATGTAAGTTGTAAGTTA-AATGTATTGTGTAAGT
1 TGTAAGTTA-AATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGT
9183633 TGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTT
1 TGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAG-T
9183685 ATGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATTAT
1 -TGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATTAT
9183731 TTAATAAAAT
Statistics
Matches: 412, Mismatches: 20, Indels: 30
0.89 0.04 0.06
Matches are distributed among these distances:
43 24 0.06
44 14 0.03
45 2 0.00
46 1 0.00
47 1 0.00
48 1 0.00
49 1 0.00
50 99 0.24
51 194 0.47
52 1 0.00
53 48 0.12
54 1 0.00
55 25 0.06
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.46
Consensus pattern (51 bp):
TGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGT
Found at i:9183396 original size:76 final size:76
Alignment explanation
Indices: 9183272--9183730 Score: 695
Period size: 76 Copynumber: 6.1 Consensus size: 76
9183262 TATTATGTAA
* * *
9183272 GTATTATGTAAGTTGTAAGTTATTATGTATTAAGGAAGTTGTAAGTTAAATGTATTGTGTAAGTT
1 GTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATTATGTAAGTT
*
9183337 GTAAGTTATTAT
66 GTAAGTTA-AAT
*
9183349 GTATTATGTAAGTTGTAAGTTA-AATGTATTATGTAAGTTGTAAGTTAAATGTATTATGTAAGTT
1 GTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATTATGTAAGTT
*
9183413 GTAAGTTATTAT
66 GTAAGTTA-AAT
* *
9183425 GTATTATGTAAGTTGTAAGTTA-AATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGT
1 GTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTA-AATGTATTATGTAAGT
9183489 TG-AAGTTAAAT
65 TGTAAGTTAAAT
*
9183500 GTATTGTGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATG---TAT-T-A--T
1 GTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATTATGTAAGTT
9183558 GTAAGTTAAAT
66 GTAAGTTAAAT
*
9183569 GTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATTGTGTAAGTT
1 GTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATTATGTAAGTT
9183634 GTAAGTTAAAT
66 GTAAGTTAAAT
9183645 GTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTATGTAAGTTAAATGTATTATGTAAG
1 GTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAG-T-TGTAAGTTAAATGTATTATGTAAG
*
9183710 TTGTAAGTTATTAT
64 TTGTAAGTTA-AAT
9183724 GTATTAT
1 GTATTAT
9183731 TTAATAAAAT
Statistics
Matches: 356, Mismatches: 13, Indels: 24
0.91 0.03 0.06
Matches are distributed among these distances:
68 2 0.01
69 60 0.17
70 1 0.00
71 1 0.00
72 5 0.01
73 1 0.00
74 1 0.00
75 26 0.07
76 177 0.50
77 40 0.11
78 33 0.09
79 9 0.03
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.46
Consensus pattern (76 bp):
GTATTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATTATGTAAGTT
GTAAGTTAAAT
Found at i:9183822 original size:34 final size:34
Alignment explanation
Indices: 9183783--9183895 Score: 106
Period size: 34 Copynumber: 3.2 Consensus size: 34
9183773 ATTAATAATA
9183783 TTTAATAAAATAACATTTTATTTTAATAGTCAAT
1 TTTAATAAAATAACATTTTATTTTAATAGTCAAT
* * * *
9183817 TTTAAT--ATTCCACATATTT-TTTATAATTATTAATAAT
1 TTTAATAAAAT-AACAT-TTTATTT-TAA-TAGT--CAAT
9183854 ATTTAATAAAATAACATTTTATTTTAATAGTCAAT
1 -TTTAATAAAATAACATTTTATTTTAATAGTCAAT
9183889 TTTAATA
1 TTTAATA
9183896 TTCCACATAT
Statistics
Matches: 61, Mismatches: 8, Indels: 20
0.69 0.09 0.22
Matches are distributed among these distances:
32 2 0.03
33 7 0.11
34 19 0.31
35 6 0.10
37 6 0.10
38 12 0.20
39 7 0.11
40 2 0.03
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (34 bp):
TTTAATAAAATAACATTTTATTTTAATAGTCAAT
Found at i:9183848 original size:72 final size:72
Alignment explanation
Indices: 9183766--9183910 Score: 290
Period size: 72 Copynumber: 2.0 Consensus size: 72
9183756 ACATTACTAA
9183766 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
9183831 TATTTTT
66 TATTTTT
9183838 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
9183903 TATTTTT
66 TATTTTT
9183910 T
1 T
9183911 TATATTTTAT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 73 1.00
ACGTcount: A:0.41, C:0.07, G:0.01, T:0.50
Consensus pattern (72 bp):
TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
TATTTTT
Found at i:9183913 original size:38 final size:38
Alignment explanation
Indices: 9183798--9183913 Score: 111
Period size: 38 Copynumber: 3.2 Consensus size: 38
9183788 TAAAATAACA
9183798 TTTTATTTTAATAGTCAATTTTAATATTCCACATATTT
1 TTTTATTTTAATAGTCAATTTTAATATTCCACATATTT
* * ***
9183836 TTTATAATTATTAATAAT--A-TTTAATA----AAATAACA
1 TTT-T-ATT-TTAATAGTCAATTTTAATATTCCACATATTT
9183870 TTTTATTTTAATAGTCAATTTTAATATTCCACATATTT
1 TTTTATTTTAATAGTCAATTTTAATATTCCACATATTT
9183908 TTTTAT
1 TTTTAT
9183914 ATTTTATTTT
Statistics
Matches: 58, Mismatches: 10, Indels: 20
0.66 0.11 0.23
Matches are distributed among these distances:
31 7 0.12
32 3 0.05
33 2 0.03
34 14 0.24
38 20 0.34
39 2 0.03
40 3 0.05
41 7 0.12
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.53
Consensus pattern (38 bp):
TTTTATTTTAATAGTCAATTTTAATATTCCACATATTT
Found at i:9184079 original size:13 final size:13
Alignment explanation
Indices: 9184061--9184105 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
9184051 ATTTATAATT
9184061 ATTTAAGTAATAA
1 ATTTAAGTAATAA
**
9184074 ATTTAAGTAATGT
1 ATTTAAGTAATAA
*
9184087 ATTTTAGTAATAA
1 ATTTAAGTAATAA
9184100 ATTTAA
1 ATTTAA
9184106 ACAAATTTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (13 bp):
ATTTAAGTAATAA
Found at i:9184090 original size:26 final size:25
Alignment explanation
Indices: 9184056--9184105 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
9184046 ATCTTATTTA
9184056 TAATTATTTAAGTAATAAATTTAAG
1 TAATTATTTAAGTAATAAATTTAAG
*
9184081 TAATGTATTTTAGTAATAAATTTAA
1 TAAT-TATTTAAGTAATAAATTTAA
9184106 ACAAATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (25 bp):
TAATTATTTAAGTAATAAATTTAAG
Found at i:9184127 original size:40 final size:40
Alignment explanation
Indices: 9184077--9184878 Score: 788
Period size: 40 Copynumber: 20.5 Consensus size: 40
9184067 GTAATAAATT
9184077 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
9184117 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
9184157 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
9184197 TAAGTAATGTATTTTAGTAAGT-AATTTAAACAAATTTTAG
1 TAAGTAATGTATTTTAGTAA-TAAATTTAAACAAATTTTAG
9184237 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
* *
9184277 TAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTTATAAA-TTTA-
1 TAAGTAATGTATTTTAGTAA-TAA---A-TTTA--AACAAATTTTAG
* * *
9184322 -AA-CAA---ATTTTAGTAAGTAATGTATTTTAGTTATAAA-TTTA-
1 TAAGTAATGTATTTTAGTAA-TAA---A-TTTA--AACAAATTTTAG
* *
9184362 -AA-CAA---ATTTTAGTAAGT-AATGT------ATTTTAG
1 TAAGTAATGTATTTTAGTAA-TAAATTTAAACAAATTTTAG
9184391 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
9184431 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
*
9184471 TAAGTAATGTATTTTAGTTATAAATTTAAACAAATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
9184511 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
* *
9184551 TAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTTATAAA-TTTA-
1 TAAGTAATGTATTTTAGTAA-TAA---A-TTTA--AACAAATTTTAG
* *
9184596 -AA-CAA---ATTTTAGTAAGT-AATGT------ATTTTAG
1 TAAGTAATGTATTTTAGTAA-TAAATTTAAACAAATTTTAG
9184625 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
*
9184665 TAAGTAATGTATTTTAGTTATAAATTTAAACAAATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
* *
9184705 TAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTTATAAA-TTTA-
1 TAAGTAATGTATTTTAGTAA-TAA---A-TTTA--AACAAATTTTAG
*
9184750 -AA-CAA---ATTTTAGTAAGT-AATTT------ATTTTAG
1 TAAGTAATGTATTTTAGTAA-TAAATTTAAACAAATTTTAG
9184779 TAAGTAATGTATTTTAGTAATAAATTTAAACAAA-TTTATG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTA-G
*
9184819 TAAGTAATGTATTTTAGTTATAAATTTAAACAAATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
*
9184859 TAAGTAATTTATTTTAGTAA
1 TAAGTAATGTATTTTAGTAA
9184879 GTAATGTATT
Statistics
Matches: 672, Mismatches: 23, Indels: 134
0.81 0.03 0.16
Matches are distributed among these distances:
27 3 0.00
28 12 0.02
30 6 0.01
31 6 0.01
33 3 0.00
34 43 0.06
35 7 0.01
36 3 0.00
39 8 0.01
40 516 0.77
41 14 0.02
43 6 0.01
44 9 0.01
45 12 0.02
46 12 0.02
47 12 0.02
ACGTcount: A:0.43, C:0.02, G:0.11, T:0.44
Consensus pattern (40 bp):
TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
Found at i:9184211 original size:57 final size:57
Alignment explanation
Indices: 9184150--9184682 Score: 498
Period size: 57 Copynumber: 9.1 Consensus size: 57
9184140 ATTTAAACAA
9184150 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
* * *
9184207 ATTTTAGTAAGTAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAATAAA-TTTA--AA-C
1 ATTTTAGTAAGTAATGT------ATTTTAGTAA-TAA---A-TTTA--AACAAATTTTAGTAAGT
9184268 AA---
53 AATGT
* * *
9184270 ATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTTATAAA-TTTA--AA-CAA---
1 ATTTTAGTAAGTAATGTATTTTAGTAA-TAA---A-TTTA--AACAAATTTTAGTAAGTAATGT
*
9184327 ATTTTAGTAAGTAATGTATTTTAGTTATAAATTTAAACAAATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
9184384 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
* * * *
9184441 ATTTTAGTAA-TAA---A-TTTA--AACAAATTTTAGTAAGTAATGTATTTTAGTTA-TAAATTT
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAA-TTTA--AA-CAA---ATTTTAGTAAGT-AATGT
9184498 AAACAAATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
1 ------ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
*
9184561 ATTTTAGTAAGTAATGTATTTTAGTTATAAATTTAAACAAATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
9184618 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
9184675 ATTTTAGT
1 ATTTTAGT
9184683 TATAAATTTA
Statistics
Matches: 414, Mismatches: 20, Indels: 84
0.80 0.04 0.16
Matches are distributed among these distances:
50 9 0.02
51 8 0.02
52 8 0.02
53 6 0.01
54 4 0.01
56 7 0.02
57 280 0.68
63 49 0.12
64 7 0.02
66 4 0.01
67 6 0.01
68 8 0.02
69 8 0.02
70 10 0.02
ACGTcount: A:0.42, C:0.02, G:0.11, T:0.44
Consensus pattern (57 bp):
ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
Found at i:9184251 original size:97 final size:98
Alignment explanation
Indices: 9184150--9184530 Score: 343
Period size: 97 Copynumber: 4.1 Consensus size: 98
9184140 ATTTAAACAA
9184150 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGT
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGT
*
9184215 AAGTAATTTAAACAAATTTTAGTAAGT-AATGT
66 AAGTAATGTAAACAAATTTTAGTAAGTAAATGT
*
9184247 ATTTTAGTAA-TAA---A-TTTA--AACAAATTT-------T---AGTAAGTAATGTATTTTAGT
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGT
**** * * * ***
9184295 AAGTAATGTATTTTAGTTATA--AATTTAAACAA
66 AAGTAATGTAAACAAATTTTAGTAA-GTAAATGT
*
9184327 ATTTTAGTAAGTAATGTATTTTAGTTATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGT
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGT
*
9184392 AAGTAATGT------ATTTTAGTAA-TAAATTT
66 AAGTAATGTAAACAAATTTTAGTAAGTAAATGT
9184418 AAACAAATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTAT
1 ------ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTAT
* *
9184483 TTTAGTTA-TAAATTTAAACAAATTTTAGTAAGT-AATGT
60 TTTAGTAAGT-AATGTAAACAAATTTTAGTAAGTAAATGT
9184521 ATTTTAGTAA
1 ATTTTAGTAA
9184531 TAAATTTAAA
Statistics
Matches: 226, Mismatches: 23, Indels: 70
0.71 0.07 0.22
Matches are distributed among these distances:
78 2 0.01
79 1 0.00
80 46 0.20
81 3 0.01
83 1 0.00
84 1 0.00
85 4 0.02
87 7 0.03
90 8 0.04
91 8 0.04
92 4 0.02
93 3 0.01
94 1 0.00
96 4 0.02
97 118 0.52
103 14 0.06
104 1 0.00
ACGTcount: A:0.43, C:0.02, G:0.11, T:0.44
Consensus pattern (98 bp):
ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGT
AAGTAATGTAAACAAATTTTAGTAAGTAAATGT
Found at i:9184291 original size:137 final size:137
Alignment explanation
Indices: 9184150--9184904 Score: 882
Period size: 137 Copynumber: 5.3 Consensus size: 137
9184140 ATTTAAACAA
9184150 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGT
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGT
9184215 AAGT-AATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTA
66 AA-TAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTA
9184279 AGTAATGT
130 AGTAATGT
*
9184287 ATTTTAGTAAGTAATGTATTTTAGTTATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGT
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGT
* *
9184352 TATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAA-T
66 AATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAA-TAA---A-TTTA--AACAAATT
*
9184416 TTA--AA-CAA---
124 TTAGTAAGTAATGT
9184424 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGT
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGT
*
9184489 TATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAA
66 AATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAA
9184554 GTAATGT
131 GTAATGT
*
9184561 ATTTTAGTAAGTAATGTATTTTAGTTATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGT
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGT
* * * * * * *
9184626 AAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAA-GTAATGTATT-TTAGTTATAAA
66 AA-TAA---A-TTTA--AACAAATTT-----TA-GTAAGTAATGT-AT-T-TTAGTA-ATA-AAT
9184689 TTTAAACAAATTTTAGTAAGTAATGT
113 TT-AAACAAATTTTAGTAAGTAATGT
* *
9184715 ATTTTAGTAAGTAATGTATTTTAGTTATAAATTTAAACAAATTTTAGTAAGTAATTTATTTTAGT
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGT
* *
9184780 AAGTAATGTATTTTAGTAATAAATTTAAACAAATTTATGTAAGTAATGTATTTTAGTTATAAATT
66 AA-TAA---A-TTTA--AACAAA--T-------TTTA-GTAAGTAATGTATTTTAGTAATAAATT
*
9184845 TAAACAAATTTTAGTAAGTAATTT
114 TAAACAAATTTTAGTAAGTAATGT
9184869 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAA
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAA
9184905 CATTCAATCG
Statistics
Matches: 547, Mismatches: 26, Indels: 73
0.85 0.04 0.11
Matches are distributed among these distances:
130 5 0.01
131 4 0.01
132 4 0.01
133 3 0.01
134 2 0.00
136 4 0.01
137 274 0.50
138 6 0.01
140 2 0.00
141 4 0.01
142 8 0.01
143 4 0.01
144 13 0.02
149 3 0.01
150 8 0.01
151 3 0.01
152 4 0.01
153 4 0.01
154 167 0.31
155 4 0.01
156 5 0.01
157 2 0.00
158 10 0.02
159 2 0.00
163 2 0.00
ACGTcount: A:0.42, C:0.02, G:0.11, T:0.45
Consensus pattern (137 bp):
ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGT
AATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAA
GTAATGT
Found at i:9184334 original size:23 final size:23
Alignment explanation
Indices: 9184304--9184374 Score: 66
Period size: 23 Copynumber: 3.3 Consensus size: 23
9184294 TAAGTAATGT
9184304 ATTTTAGTTATAAATTTAAACAA
1 ATTTTAGTTATAAATTTAAACAA
* *
9184327 ATTTTAGTAAGT-AATGT------
1 ATTTTAGTTA-TAAATTTAAACAA
9184344 ATTTTAGTTATAAATTTAAACAA
1 ATTTTAGTTATAAATTTAAACAA
9184367 ATTTTAGT
1 ATTTTAGT
9184375 AAGTAATGTA
Statistics
Matches: 36, Mismatches: 4, Indels: 16
0.64 0.07 0.29
Matches are distributed among these distances:
16 1 0.03
17 13 0.36
23 21 0.58
24 1 0.03
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.46
Consensus pattern (23 bp):
ATTTTAGTTATAAATTTAAACAA
Found at i:9184431 original size:23 final size:23
Alignment explanation
Indices: 9184401--9184553 Score: 96
Period size: 23 Copynumber: 7.4 Consensus size: 23
9184391 TAAGTAATGT
9184401 ATTTTAGTAATAAATTTAAACAA
1 ATTTTAGTAATAAATTTAAACAA
*
9184424 ATTTTAGTAAGT-AATGT------
1 ATTTTAGTAA-TAAATTTAAACAA
9184441 ATTTTAGTAATAAATTTAAACAA
1 ATTTTAGTAATAAATTTAAACAA
*
9184464 ATTTTAGTAAGT-AATGT------
1 ATTTTAGTAA-TAAATTTAAACAA
*
9184481 ATTTTAGTTATAAATTTAAACAA
1 ATTTTAGTAATAAATTTAAACAA
*
9184504 ATTTTAGTAAGT-AATGT------
1 ATTTTAGTAA-TAAATTTAAACAA
9184521 ATTTTAGTAATAAATTTAAACAA
1 ATTTTAGTAATAAATTTAAACAA
9184544 ATTTTAGTAA
1 ATTTTAGTAA
9184554 GTAATGTATT
Statistics
Matches: 98, Mismatches: 8, Indels: 48
0.64 0.05 0.31
Matches are distributed among these distances:
16 3 0.03
17 41 0.42
23 51 0.52
24 3 0.03
ACGTcount: A:0.45, C:0.03, G:0.09, T:0.43
Consensus pattern (23 bp):
ATTTTAGTAATAAATTTAAACAA
Found at i:9184565 original size:97 final size:94
Alignment explanation
Indices: 9184499--9184724 Score: 232
Period size: 97 Copynumber: 2.3 Consensus size: 94
9184489 TATAAATTTA
9184499 AACAAATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATT
1 AACAAATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATT
* *
9184564 TTAGTAAGTAATGTATTTTAGTTATAAATTTA
66 TTAGTAAGTAA--TATTTTAG-AACAAATTTA
* *
9184596 AACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAA-TTTA--AA-CA
1 AACAAATTTTAGTAAGTAATGTATTTTAGTAA-TAA---A-TTTA--AACAAATTTTAGTAAGTA
* *
9184657 A---ATTTTAGTAAGTAATGTATTTTAGTTATAAATTTA
59 ATGTATTTTAGTAAGTAA--TATTTTAG-AACAAATTTA
9184693 AACAAATTTTAGTAAGTAATGTATTTTAGTAA
1 AACAAATTTTAGTAAGTAATGTATTTTAGTAA
9184725 GTAATGTATT
Statistics
Matches: 120, Mismatches: 2, Indels: 14
0.88 0.01 0.10
Matches are distributed among these distances:
97 99 0.82
98 3 0.03
100 2 0.02
101 3 0.03
102 4 0.03
103 4 0.03
104 5 0.04
ACGTcount: A:0.42, C:0.02, G:0.12, T:0.44
Consensus pattern (94 bp):
AACAAATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATT
TTAGTAAGTAATATTTTAGAACAAATTTA
Found at i:9184665 original size:23 final size:23
Alignment explanation
Indices: 9184635--9184707 Score: 70
Period size: 23 Copynumber: 3.4 Consensus size: 23
9184625 TAAGTAATGT
9184635 ATTTTAGTAATAAATTTAAACAA
1 ATTTTAGTAATAAATTTAAACAA
*
9184658 ATTTTAGTAAGT-AATGT------
1 ATTTTAGTAA-TAAATTTAAACAA
*
9184675 ATTTTAGTTATAAATTTAAACAA
1 ATTTTAGTAATAAATTTAAACAA
9184698 ATTTTAGTAA
1 ATTTTAGTAA
9184708 GTAATGTATT
Statistics
Matches: 38, Mismatches: 4, Indels: 16
0.66 0.07 0.28
Matches are distributed among these distances:
16 1 0.03
17 13 0.34
23 23 0.61
24 1 0.03
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.44
Consensus pattern (23 bp):
ATTTTAGTAATAAATTTAAACAA
Found at i:9184719 original size:57 final size:57
Alignment explanation
Indices: 9184658--9184836 Score: 324
Period size: 57 Copynumber: 3.1 Consensus size: 57
9184648 ATTTAAACAA
9184658 ATTTTAGTAAGTAATGTATTTTAGTTATAAATTTAAACAAATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGTATTTTAGTTATAAATTTAAACAAATTTTAGTAAGTAATGT
*
9184715 ATTTTAGTAAGTAATGTATTTTAGTTATAAATTTAAACAAATTTTAGTAAGTAATTT
1 ATTTTAGTAAGTAATGTATTTTAGTTATAAATTTAAACAAATTTTAGTAAGTAATGT
*
9184772 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAA-TTTATGTAAGTAATGT
1 ATTTTAGTAAGTAATGTATTTTAGTTATAAATTTAAACAAATTTTA-GTAAGTAATGT
9184829 ATTTTAGT
1 ATTTTAGT
9184837 TATAAATTTA
Statistics
Matches: 118, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
56 4 0.03
57 114 0.97
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.46
Consensus pattern (57 bp):
ATTTTAGTAAGTAATGTATTTTAGTTATAAATTTAAACAAATTTTAGTAAGTAATGT
Found at i:9184725 original size:97 final size:94
Alignment explanation
Indices: 9184715--9184904 Score: 256
Period size: 97 Copynumber: 2.0 Consensus size: 94
9184705 TAAGTAATGT
* *
9184715 ATTTTAGTAAGTAATGTATTTTAGTTATAAATTTAAACAAATTTTAGTAAGTAATTTATTTTAGT
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGT
*
9184780 AAGTAATGTATTTTAGTAATAAATTTAAACAA
66 AAGTAA--TATTTTAG-AACAAATTTAAACAA
* *
9184812 A-TTTATGTAAGTAATGTATTTTAGTTATAAATTTAAACAAATTTTAGTAAGTAATTTATTTTAG
1 ATTTTA-GTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
*
9184876 TAAGTAATGTATTTTAGTAATAAATTTAA
65 TAAGTAA--TATTTTAG-AACAAATTTAA
9184905 CATTCAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
96 4 0.04
97 88 0.96
ACGTcount: A:0.42, C:0.02, G:0.11, T:0.46
Consensus pattern (94 bp):
ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGT
AAGTAATATTTTAGAACAAATTTAAACAA
Found at i:9187289 original size:88 final size:84
Alignment explanation
Indices: 9187071--9187348 Score: 448
Period size: 84 Copynumber: 3.3 Consensus size: 84
9187061 CCACATTTCC
9187071 GGCGTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTCGTGGT
1 GGCGTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTCGTGGT
9187136 CTGGAATTGCATTATTTGT
66 CTGGAATTGCATTATTTGT
* *
9187155 GGCTTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTGTGTGG
1 GGCGTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTT-CGTGG
* *
9187220 TTTGGAATAATTGCATTGTTTGT
65 TCTGG---AATTGCATTATTTGT
** *
9187243 GGCGTTTTTATAAAAACGCCACTAAATATTACAGCTGTCAACAGAAACGACACCGTTTTCGTGGT
1 GGCGTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTCGTGGT
*
9187308 CTGGAATTGCATTATTTGC
66 CTGGAATTGCATTATTTGT
9187327 GGCGTTTTCCTAAAAACGCCAC
1 GGCGTTTTCCTAAAAACGCCAC
9187349 CAAAAGTTTA
Statistics
Matches: 176, Mismatches: 14, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
84 91 0.52
85 8 0.05
87 8 0.05
88 69 0.39
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (84 bp):
GGCGTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTCGTGGT
CTGGAATTGCATTATTTGT
Found at i:9189261 original size:112 final size:112
Alignment explanation
Indices: 9189039--9190059 Score: 1813
Period size: 112 Copynumber: 9.2 Consensus size: 112
9189029 CGGCGCATAA
*
9189039 ACAA-AAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTGA
1 ACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTGC
9189103 GGCGTTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTT
66 GGCG-TTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTT
*
9189151 ACAATAAACGCCACTAATTCCCCCCCAAAGGACACAAAACGGCACCGTCTGGGTGTATTATTTGC
1 ACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTGC
*
9189216 GGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGACGCTTT
66 GGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTT
*
9189263 ACAATAAACGCCACTAATT-CCCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTCC
1 ACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTGC
9189327 GGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTT
66 GGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTT
9189374 ACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTGC
1 ACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTGC
*
9189439 GGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGACGCTTT
66 GGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTT
*
9189486 ACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTCC
1 ACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTGC
9189551 GGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTT
66 GGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTT
9189598 ACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTGC
1 ACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTGC
* *
9189663 GGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGACGTTTT
66 GGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTT
*
9189710 ACAATAAACGCCACTAATT--CCCCCAAAGGCCACAAAACGGCACCGTCTAGGTGTATTATTT-C
1 ACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTGC
9189772 TGGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTT
66 -GGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTT
*
9189820 ACAATAAACGCCACTAATT--CCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTCC
1 ACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTGC
** *
9189883 GGTATTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGACGCTTT
66 GGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTT
* *
9189930 ACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAATGGCACCGTCTGGGTGTATTATTTTC
1 ACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTGC
* *
9189995 GGCGTTTTTTATAAACGCTGCTAATGCTCACTCTTTAGCGGCACTTT
66 GGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTT
*
9190042 GCAATAAACGCCACTAAT
1 ACAATAAACGCCACTAAT
9190060 GCTCACTCTT
Statistics
Matches: 875, Mismatches: 28, Indels: 12
0.96 0.03 0.01
Matches are distributed among these distances:
109 1 0.00
110 209 0.24
111 109 0.12
112 494 0.56
113 62 0.07
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (112 bp):
ACAATAAACGCCACTAATTCCCCCCCAAAGGCCACAAAACGGCACCGTCTGGGTGTATTATTTGC
GGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTT
Found at i:9190117 original size:40 final size:40
Alignment explanation
Indices: 9190006--9190139 Score: 169
Period size: 40 Copynumber: 3.3 Consensus size: 40
9189996 GCGTTTTTTA
* * * * **
9190006 TAAACGCTGCTAATGCTCACTCTTTAGCGGCACTTTGCAA
1 TAAACGCCGCTAATGCTCACTCTTTAGCAGCGCTTTTCCT
*
9190046 TAAACGCCACTAATGCTCACTCTTTAGCAGCGCTTTTCCT
1 TAAACGCCGCTAATGCTCACTCTTTAGCAGCGCTTTTCCT
* *
9190086 TAAACGCCGCTAATGCTCACTCTTTAGCAGCGTTTTTGCT
1 TAAACGCCGCTAATGCTCACTCTTTAGCAGCGCTTTTCCT
*
9190126 CCAAACGCCGCTAA
1 -TAAACGCCGCTAA
9190140 AAGTGCCGCT
Statistics
Matches: 82, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
40 70 0.85
41 12 0.15
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (40 bp):
TAAACGCCGCTAATGCTCACTCTTTAGCAGCGCTTTTCCT
Found at i:9191472 original size:20 final size:20
Alignment explanation
Indices: 9191449--9191505 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
9191439 ATACTAGAAT
*
9191449 AAAAGTATCAATACTTTGAC
1 AAAAGTATCAATACTTTGAA
** *
9191469 AAAAGTATTGATTCTTTGAA
1 AAAAGTATCAATACTTTGAA
9191489 AAAAGTATCAATACTTT
1 AAAAGTATCAATACTTT
9191506 AAGCCAAGTA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.35
Consensus pattern (20 bp):
AAAAGTATCAATACTTTGAA
Found at i:9200851 original size:27 final size:26
Alignment explanation
Indices: 9200810--9201060 Score: 236
Period size: 27 Copynumber: 9.3 Consensus size: 26
9200800 GTAATGGGCC
* * *
9200810 TAAAATGACCAAAATACCCACAAAAGG
1 TAAAATGA-CAAAATACCCTCGAAGGG
* *
9200837 TAAAATGATCGAAATA-CTTCCGAAGGG
1 TAAAATGA-CAAAATACCCT-CGAAGGG
*
9200864 TAAAATAACTAAAATACCC-CTGAAGGG
1 TAAAATGAC-AAAATACCCTC-GAAGGG
* *
9200891 TAAAATGACTGAAATACCCTGGAAGGG
1 TAAAATGAC-AAAATACCCTCGAAGGG
*
9200918 TAAAATGACCGAAATACCCTCGAAGGG
1 TAAAATGA-CAAAATACCCTCGAAGGG
* *
9200945 TAAAATGACTAAAATACCTTTGAAGGG
1 TAAAATGAC-AAAATACCCTCGAAGGG
* * *
9200972 TAAAATAACCGAAATACCCTCAAAGGG
1 TAAAATGA-CAAAATACCCTCGAAGGG
**
9200999 TAAAATGACTAAAATACCCTTAAAGGG
1 TAAAATGAC-AAAATACCCTCGAAGGG
* *
9201026 TAAAATAACAAAATACCCCCGAAGGG
1 TAAAATGACAAAATACCCTCGAAGGG
9201052 TAAAATGAC
1 TAAAATGAC
9201061 TGTTATACCC
Statistics
Matches: 186, Mismatches: 29, Indels: 19
0.79 0.12 0.08
Matches are distributed among these distances:
26 27 0.15
27 156 0.84
28 3 0.02
ACGTcount: A:0.47, C:0.18, G:0.18, T:0.18
Consensus pattern (26 bp):
TAAAATGACAAAATACCCTCGAAGGG
Found at i:9200893 original size:54 final size:53
Alignment explanation
Indices: 9200810--9201061 Score: 287
Period size: 54 Copynumber: 4.7 Consensus size: 53
9200800 GTAATGGGCC
* * * * *
9200810 TAAAATGACCAAAATACCCACAAAAGGTAAAATGA-TCGAAATACTTCC-GAAGGG
1 TAAAATAACCAAAATACCCTCGAAGGGTAAAATGACT-AAAATAC--CCTGAAGGG
* *
9200864 TAAAATAACTAAAATACCC-CTGAAGGGTAAAATGACTGAAATACCCTGGAAGGG
1 TAAAATAACCAAAATACCCTC-GAAGGGTAAAATGACTAAAATACCCT-GAAGGG
* * *
9200918 TAAAATGACCGAAATACCCTCGAAGGGTAAAATGACTAAAATACCTTTGAAGGG
1 TAAAATAACCAAAATACCCTCGAAGGGTAAAATGACTAAAATACC-CTGAAGGG
* * *
9200972 TAAAATAACCGAAATACCCTCAAAGGGTAAAATGACTAAAATACCCTTAAAGGG
1 TAAAATAACCAAAATACCCTCGAAGGGTAAAATGACTAAAATACCC-TGAAGGG
*
9201026 TAAAATAA-CAAAATACCCCCGAAGGGTAAAATGACT
1 TAAAATAACCAAAATACCCTCGAAGGGTAAAATGACT
9201062 GTTATACCCC
Statistics
Matches: 175, Mismatches: 16, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
52 2 0.01
53 26 0.15
54 144 0.82
55 3 0.02
ACGTcount: A:0.46, C:0.18, G:0.17, T:0.18
Consensus pattern (53 bp):
TAAAATAACCAAAATACCCTCGAAGGGTAAAATGACTAAAATACCCTGAAGGG
Found at i:9200945 original size:81 final size:81
Alignment explanation
Indices: 9200810--9201062 Score: 321
Period size: 81 Copynumber: 3.1 Consensus size: 81
9200800 GTAATGGGCC
** * * * *
9200810 TAAAATGACCAAAATACCCACAAAAGGTAAAATGATCGAAATA-CTTCCGAAGGGTAAAATAACT
1 TAAAATGACTGAAATACCCTCAAAGGGTAAAATGACCGAAATACCCT-CGAAGGGTAAAATAACT
9200874 AAAATACCCCTGAAGGG
65 AAAATACCCCTGAAGGG
** *
9200891 TAAAATGACTGAAATACCCTGGAAGGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATGACTA
1 TAAAATGACTGAAATACCCTCAAAGGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATAACTA
**
9200956 AAATACCTTTGAAGGG
66 AAATACCCCTGAAGGG
* * ** **
9200972 TAAAATAACCGAAATACCCTCAAAGGGTAAAATGACTAAAATACCCTTAAAGGGTAAAATAAC-A
1 TAAAATGACTGAAATACCCTCAAAGGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATAACTA
*
9201036 AAATACCCCCGAAGGG
66 AAATACCCCTGAAGGG
9201052 TAAAATGACTG
1 TAAAATGACTG
9201063 TTATACCCCT
Statistics
Matches: 146, Mismatches: 25, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
80 23 0.16
81 121 0.83
82 2 0.01
ACGTcount: A:0.46, C:0.18, G:0.18, T:0.18
Consensus pattern (81 bp):
TAAAATGACTGAAATACCCTCAAAGGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATAACTA
AAATACCCCTGAAGGG
Found at i:9201252 original size:27 final size:26
Alignment explanation
Indices: 9201222--9201296 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
9201212 TGTACTGGTG
* *
9201222 GCTTTGCCACATATACTGTTACTGGCA
1 GCTTTGCTACAT-TACTATTACTGGCA
* * *
9201249 GCTTTGTTGCATTACTATTATTGGCA
1 GCTTTGCTACATTACTATTACTGGCA
* *
9201275 GCTTTGCTACATCATTATTACT
1 GCTTTGCTACATTACTATTACT
9201297 AATAGCTTTG
Statistics
Matches: 38, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
26 29 0.76
27 9 0.24
ACGTcount: A:0.21, C:0.21, G:0.16, T:0.41
Consensus pattern (26 bp):
GCTTTGCTACATTACTATTACTGGCA
Found at i:9201476 original size:33 final size:33
Alignment explanation
Indices: 9201411--9201476 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
9201401 TGCATTACTG
* *
9201411 CATTGTACTGTTACTGTACTGGGCTAATGCCCA
1 CATTGTACTGTTACTGTAATGGGCTAAGGCCCA
*
9201444 CATTGTACTGTTACTG-AATAGGGCTCAGGCCCA
1 CATTGTACTGTTACTGTAAT-GGGCTAAGGCCCA
9201477 GACTGTTACT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 2 0.07
33 27 0.93
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.30
Consensus pattern (33 bp):
CATTGTACTGTTACTGTAATGGGCTAAGGCCCA
Found at i:9201855 original size:16 final size:16
Alignment explanation
Indices: 9201833--9201869 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
9201823 TAATAAAATT
9201833 TCAAAAATATTTAATAA
1 TCAAAAA-ATTTAATAA
9201850 -C-AAAAATTTAATAA
1 TCAAAAAATTTAATAA
9201864 TCAAAA
1 TCAAAA
9201870 TTTTAAACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 5
0.78 0.00 0.22
Matches are distributed among these distances:
14 9 0.50
15 5 0.28
16 4 0.22
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.30
Consensus pattern (16 bp):
TCAAAAAATTTAATAA
Found at i:9201858 original size:14 final size:15
Alignment explanation
Indices: 9201836--9201875 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
9201826 TAAAATTTCA
9201836 AAAATATTTAATAA-C
1 AAAA-ATTTAATAATC
9201851 AAAAATTTAATAATC
1 AAAAATTTAATAATC
*
9201866 AAAATTTTAA
1 AAAAATTTAA
9201876 ACATCTAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.39
15 14 0.61
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (15 bp):
AAAAATTTAATAATC
Found at i:9204270 original size:12 final size:12
Alignment explanation
Indices: 9204255--9204295 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
9204245 TAAAAAACAT
9204255 AATAATAATATA
1 AATAATAATATA
9204267 AATAATAATATA
1 AATAATAATATA
*
9204279 GAT-AT-ATATA
1 AATAATAATATA
9204289 TAATAAT
1 -AATAAT
9204296 GTTAGCAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
10 5 0.20
11 4 0.16
12 16 0.64
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (12 bp):
AATAATAATATA
Found at i:9210727 original size:18 final size:18
Alignment explanation
Indices: 9210706--9210745 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
9210696 ATAATTTCAA
*
9210706 AAAAATA-TATAATACATC
1 AAAAATACTA-AAAACATC
9210724 AAAAATACTAAAAACATC
1 AAAAATACTAAAAACATC
9210742 AAAA
1 AAAA
9210746 TAAATATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAAATACTAAAAACATC
Found at i:9211515 original size:42 final size:43
Alignment explanation
Indices: 9211454--9211579 Score: 134
Period size: 43 Copynumber: 3.0 Consensus size: 43
9211444 ATAAATGTCG
* *
9211454 CTAAAGGTCATGACCTTTAGC-AGCGC-TTTCAC-ACAAACGCCA
1 CTAAAGGTCATGACTTTTAGCGA-CACTTTTC-CTACAAACGCCA
*
9211496 CTAAAGGTCATGACTTTTAGCGACACTTTTCCTACAAACGCCG
1 CTAAAGGTCATGACTTTTAGCGACACTTTTCCTACAAACGCCA
* ** * *
9211539 CTATAGACCATGACTTTTAGCGGCACTTTT-TTACAAACGCC
1 CTAAAGGTCATGACTTTTAGCGACACTTTTCCTACAAACGCC
9211580 GCTATTGAAC
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
42 33 0.45
43 40 0.55
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (43 bp):
CTAAAGGTCATGACTTTTAGCGACACTTTTCCTACAAACGCCA
Found at i:9211551 original size:43 final size:43
Alignment explanation
Indices: 9211486--9211711 Score: 162
Period size: 43 Copynumber: 5.3 Consensus size: 43
9211476 GCGCTTTCAC
* * **
9211486 ACAAACGCCACTAAAGGTCATGACTTTTAGCGACACTTTTCCT
1 ACAAACGCCGCTATAGAACATGACTTTTAGCGACACTTTTCCT
* * *
9211529 ACAAACGCCGCTATAGACCATGACTTTTAGCGGCACTTTT-TT
1 ACAAACGCCGCTATAGAACATGACTTTTAGCGACACTTTTCCT
* * *
9211571 ACAAACGCCGCTATTGAACA-GA-TCTTTAGCGACGCTTTTTCGT
1 ACAAACGCCGCTATAGAACATGACT-TTTAGCGACAC-TTTTCCT
* * * * **
9211614 ACATACGCCGCTATTGAACA--AATCTTTAGCGACGCTTTTTAGT
1 ACAAACGCCGCTATAGAACATGACT-TTTAGCGACAC-TTTTCCT
* * * *
9211657 ACATACGCCGCTATAGAACA--AATCTTTAACGGCACTTTTCGC-
1 ACAAACGCCGCTATAGAACATGACT-TTTAGCGACACTTTTC-CT
9211699 ACAAACGCCGCTA
1 ACAAACGCCGCTA
9211712 AAAGCATATC
Statistics
Matches: 158, Mismatches: 20, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
40 1 0.01
41 11 0.07
42 40 0.25
43 106 0.67
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (43 bp):
ACAAACGCCGCTATAGAACATGACTTTTAGCGACACTTTTCCT
Found at i:9211611 original size:85 final size:84
Alignment explanation
Indices: 9211511--9211711 Score: 219
Period size: 85 Copynumber: 2.4 Consensus size: 84
9211501 GGTCATGACT
* * *
9211511 TTTAGCGACACTTTTCCTACAAACGCCGCTATAGACCATGA-CTTTTAGCGGCACTTTTT-TACA
1 TTTAGCGACACTTTTCCTACAAACGCCGCTATAGAACA-AATC-TTTAGCGACACTTTTTATACA
* *
9211574 AACGCCGCTATTGAACAGATC
64 AACGCCGCTATAGAACAAATC
* * * * *
9211595 TTTAGCGACGCTTTTTCGTACATACGCCGCTATTGAACAAATCTTTAGCGACGCTTTTTAGTACA
1 TTTAGCGACAC-TTTTCCTACAAACGCCGCTATAGAACAAATCTTTAGCGACACTTTTTA-TACA
*
9211660 TACGCCGCTATAGAACAAATC
64 AACGCCGCTATAGAACAAATC
* *
9211681 TTTAACGGCACTTTTCGC-ACAAACGCCGCTA
1 TTTAGCGACACTTTTC-CTACAAACGCCGCTA
9211712 AAAGCATATC
Statistics
Matches: 96, Mismatches: 16, Indels: 9
0.79 0.13 0.07
Matches are distributed among these distances:
84 25 0.26
85 41 0.43
86 30 0.31
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (84 bp):
TTTAGCGACACTTTTCCTACAAACGCCGCTATAGAACAAATCTTTAGCGACACTTTTTATACAAA
CGCCGCTATAGAACAAATC
Found at i:9212015 original size:43 final size:43
Alignment explanation
Indices: 9211968--9212058 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 43
9211958 ACATATGCAA
* * *
9211968 GGTAATAAAACATACAATGCATTTTCTTAATAAAGTAAATCTT
1 GGTAATAAAACATACAATACATTTACTTAATAAAGGAAATCTT
* * *
9212011 GGTAATAAAAGATATAATACATTTACTTAATCAAGGAAATCTT
1 GGTAATAAAACATACAATACATTTACTTAATAAAGGAAATCTT
9212054 -GTAAT
1 GGTAAT
9212059 GAACTCAAAG
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 5 0.12
43 37 0.88
ACGTcount: A:0.45, C:0.10, G:0.11, T:0.34
Consensus pattern (43 bp):
GGTAATAAAACATACAATACATTTACTTAATAAAGGAAATCTT
Found at i:9216093 original size:8 final size:7
Alignment explanation
Indices: 9216075--9216180 Score: 54
Period size: 7 Copynumber: 14.9 Consensus size: 7
9216065 ACCAATTAAT
9216075 CTAAACC
1 CTAAACC
9216082 CTAAACCC
1 CTAAA-CC
9216090 CT-AACC
1 CTAAACC
* *
9216096 CTTATCTC
1 CTAAAC-C
*
9216104 TTAAACC
1 CTAAACC
*
9216111 CTAAATC
1 CTAAACC
* *
9216118 ATAAATC
1 CTAAACC
*
9216125 ATAAACC
1 CTAAACC
*
9216132 CTAACCC
1 CTAAACC
9216139 CTAAACC
1 CTAAACC
* *
9216146 CATGACCC
1 C-TAAACC
9216154 CT-AACC
1 CTAAACC
*
9216160 TCTAACCC
1 -CTAAACC
9216168 CTAAACC
1 CTAAACC
*
9216175 TTAAAC
1 CTAAAC
9216181 TCCAACCCTT
Statistics
Matches: 76, Mismatches: 17, Indels: 12
0.72 0.16 0.11
Matches are distributed among these distances:
6 7 0.09
7 53 0.70
8 16 0.21
ACGTcount: A:0.38, C:0.40, G:0.01, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:9216143 original size:14 final size:14
Alignment explanation
Indices: 9216126--9216174 Score: 64
Period size: 14 Copynumber: 3.4 Consensus size: 14
9216116 TCATAAATCA
9216126 TAAACCCTAACCCC
1 TAAACCCTAACCCC
*
9216140 TAAACCCATGACCCC
1 TAAACCC-TAACCCC
9216155 T-AACCTCTAACCCC
1 TAAACC-CTAACCCC
9216169 TAAACC
1 TAAACC
9216175 TTAAACTCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
14 18 0.60
15 12 0.40
ACGTcount: A:0.35, C:0.47, G:0.02, T:0.16
Consensus pattern (14 bp):
TAAACCCTAACCCC
Found at i:9216227 original size:22 final size:22
Alignment explanation
Indices: 9216202--9216244 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
9216192 AACTATAAAT
9216202 CATAATCCAAAATCCCTAAAAC
1 CATAATCCAAAATCCCTAAAAC
**
9216224 CATAATCCCTAATCCCTAAAA
1 CATAATCCAAAATCCCTAAAA
9216245 TAGTAACTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.21
Consensus pattern (22 bp):
CATAATCCAAAATCCCTAAAAC
Found at i:9217009 original size:41 final size:39
Alignment explanation
Indices: 9216949--9217312 Score: 296
Period size: 41 Copynumber: 8.9 Consensus size: 39
9216939 TAAAATATTT
*
9216949 TTAGCGGTGCTTTTTCAAAAACGCCGCTAAAGCCCTCAGCA
1 TTAGCGGCGC-TTTTCAAAAACGCCGCTAAAGCCC-CAGCA
* * *
9216990 TTAGCAGCACTTTTCCAAAAATGCCGCTAAAGCCCCCAGCA
1 TTAGCGGCGCTTTT-CAAAAACGCCGCTAAAG-CCCCAGCA
* * * *
9217031 TTAGCGGCGCTTTTAAAAAACGCCACTAAAACACCGAGCA
1 TTAGCGGCGCTTTTCAAAAACGCCGCTAAAGC-CCCAGCA
** * *
9217071 TTAGCAACGTTTTTTCAAAAACGCTGCTAAAGCCGCCAGCA
1 TTAGCGGCG-CTTTTCAAAAACGCCGCTAAAGCC-CCAGCA
* * * *
9217112 TTAGCGGCGCCTTTTCAAACACGCCTCTAAAACCTCGAGCA
1 TTAGCGGCG-CTTTTCAAAAACGCCGCTAAAGCC-CCAGCA
* * * ** *
9217153 TTAGCGGCACGTTTTTAAAAATCGCCGCTAAAACATCGGACA
1 TTAGCGGCGC-TTTTCAAAAA-CGCCGCTAAAGCCCCAG-CA
* * *
9217195 TTAGCGGCGCTTTTCCAAAAACGCTGCTAAAACACCGAGCA
1 TTAGCGGCGCTTTT-CAAAAACGCCGCTAAAGC-CCCAGCA
* **
9217236 TTAGCGGTGCATTTTCAAAAATACCGCTAAAGCCCCAAGCA
1 TTAGCGGCGC-TTTTCAAAAACGCCGCTAAAGCCCC-AGCA
* * *
9217277 TTAGCGGCGCTTTTTTAGAAACACCGCTAAAGCCCC
1 TTAGCGGCGC-TTTTCAAAAACGCCGCTAAAGCCCC
9217313 GAAAGGTAAG
Statistics
Matches: 256, Mismatches: 55, Indels: 24
0.76 0.16 0.07
Matches are distributed among these distances:
39 1 0.00
40 34 0.13
41 186 0.73
42 35 0.14
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (39 bp):
TTAGCGGCGCTTTTCAAAAACGCCGCTAAAGCCCCAGCA
Found at i:9217221 original size:124 final size:121
Alignment explanation
Indices: 9216949--9217307 Score: 382
Period size: 124 Copynumber: 2.9 Consensus size: 121
9216939 TAAAATATTT
* * * *
9216949 TTAGCGGTGCTTTTTCAAAAACGCCGCTAAAGCCCTCAGCATTAGCAGC-ACTTTTCCAAAAATG
1 TTAGCGGCGCTTTTTCAAAAACGCTGCTAAAGCCC-CAGCATTAGCGGCGCCTTTT-CAAAAATG
* * *
9217013 CCGCTAAAGCCCCCAGCATTAGCGG-CGCTTTTAAAAAACGCCACTAAAACACCGAGCA
64 CCGCTAAAGCCCCAAGCATTAGCGGCCG-TTTTTAAAAACGCCGCTAAAACACCGAGCA
** * * *
9217071 TTAGCAACGTTTTTTCAAAAACGCTGCTAAAGCCGCCAGCATTAGCGGCGCCTTTTCAAACACGC
1 TTAGCGGCGCTTTTTCAAAAACGCTGCTAAAGCC-CCAGCATTAGCGGCGCCTTTTCAAAAATGC
* * * * *
9217136 CTCTAAAACCTCGAGCATTAGCGGCACGTTTTTAAAAATCGCCGCTAAAACATCG-GACA
65 CGCTAAAGCCCCAAGCATTAGCGGC-CGTTTTTAAAAA-CGCCGCTAAAACACCGAG-CA
* * * * * *
9217195 TTAGCGGCGCTTTTCCAAAAACGCTGCTAAAACACCGAGCATTAGCGGTGCATTTTCAAAAATAC
1 TTAGCGGCGCTTTTTCAAAAACGCTGCTAAAGC-CCCAGCATTAGCGGCGCCTTTTCAAAAATGC
* * *
9217260 CGCTAAAGCCCCAAGCATTAGCGGCGCTTTTTTAGAAACACCGCTAAA
65 CGCTAAAGCCCCAAGCATTAGCGGC-CGTTTTTAAAAACGCCGCTAAA
9217308 GCCCCGAAAG
Statistics
Matches: 195, Mismatches: 35, Indels: 13
0.80 0.14 0.05
Matches are distributed among these distances:
122 68 0.35
123 25 0.13
124 101 0.52
125 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.22
Consensus pattern (121 bp):
TTAGCGGCGCTTTTTCAAAAACGCTGCTAAAGCCCCAGCATTAGCGGCGCCTTTTCAAAAATGCC
GCTAAAGCCCCAAGCATTAGCGGCCGTTTTTAAAAACGCCGCTAAAACACCGAGCA
Found at i:9217306 original size:82 final size:80
Alignment explanation
Indices: 9216949--9217307 Score: 344
Period size: 82 Copynumber: 4.4 Consensus size: 80
9216939 TAAAATATTT
* * * * *
9216949 TTAGCGGTGCTTTTTCAAAAACGCCGCTAAAGCCCTCAGCATTAGCAGCAC-TTTTCCAAAAATG
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCC-GAGCATTAGCGGCGCATTTT-CAAAAATG
9217013 CCGCTAAAGCCCCCAGCA
64 CCGCTAAAG-CCCCAGCA
* * ** ** *
9217031 TTAGCGGCGC-TTTTAAAAAACGCCACTAAAACACCGAGCATTAGCAACGTTTTTTCAAAAACGC
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAAC-CCGAGCATTAGCGGCGCATTTTCAAAAATGC
*
9217095 TGCTAAAGCCGCCAGCA
65 CGCTAAAGCC-CCAGCA
* * * * * *
9217112 TTAGCGGCGCCTTTTCAAACACGCCTCTAAAACCTCGAGCATTAGCGGCACGTTTTTAAAAATCG
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACC-CGAGCATTAGCGGCGCATTTTCAAAAAT-G
* ** *
9217177 CCGCTAAAACATCGGACA
64 CCGCTAAAGCCCCAG-CA
* * * *
9217195 TTAGCGGCGCTTTTCCAAAAACGCTGCTAAAACACCGAGCATTAGCGGTGCATTTTCAAAAATAC
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAAC-CCGAGCATTAGCGGCGCATTTTCAAAAATGC
9217260 CGCTAAAGCCCCAAGCA
65 CGCTAAAGCCCC-AGCA
* * *
9217277 TTAGCGGCGCTTTTTTAGAAACACCGCTAAA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAA
9217308 GCCCCGAAAG
Statistics
Matches: 224, Mismatches: 44, Indels: 18
0.78 0.15 0.06
Matches are distributed among these distances:
80 2 0.01
81 62 0.28
82 95 0.42
83 64 0.29
84 1 0.00
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.22
Consensus pattern (80 bp):
TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCGAGCATTAGCGGCGCATTTTCAAAAATGCC
GCTAAAGCCCCAGCA
Found at i:9217432 original size:41 final size:41
Alignment explanation
Indices: 9217355--9217471 Score: 123
Period size: 40 Copynumber: 2.9 Consensus size: 41
9217345 GTTTTTTGCG
**
9217355 GTTTTTTTCGAAAAACGGCGCTAATGCTC-ATTTTTAGCGGC
1 GTTTTTTT-GAAAAACACCGCTAATGCTCGATTTTTAGCGGC
* *
9217396 GTTTTTTTGAAAAACACCGCTAATGCTCGATCTTTAGTGGC
1 GTTTTTTTGAAAAACACCGCTAATGCTCGATTTTTAGCGGC
* ** *
9217437 G--ATTTCCATAAAGCACCGCTAATGCTCGATTTTTA
1 GTTTTTTTGA-AAAACACCGCTAATGCTCGATTTTTA
9217472 CCAGTGTTTT
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
39 4 0.06
40 42 0.65
41 19 0.29
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (41 bp):
GTTTTTTTGAAAAACACCGCTAATGCTCGATTTTTAGCGGC
Found at i:9222735 original size:21 final size:20
Alignment explanation
Indices: 9222710--9222775 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 20
9222700 ATTTTTTTGA
9222710 TTTATGTAATTTTAAATAATT
1 TTTAT-TAATTTTAAATAATT
*
9222731 TTTATT--TTATTAGA-AATT
1 TTTATTAATT-TTAAATAATT
9222749 TCTTA-TAATTTTTAAATAATT
1 T-TTATTAA-TTTTAAATAATT
9222770 TTTATT
1 TTTATT
9222776 TTATTATTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
18 8 0.22
19 7 0.19
20 8 0.22
21 13 0.36
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.61
Consensus pattern (20 bp):
TTTATTAATTTTAAATAATT
Found at i:9226725 original size:126 final size:126
Alignment explanation
Indices: 9226434--9226725 Score: 451
Period size: 126 Copynumber: 2.3 Consensus size: 126
9226424 TCAGGCCAAA
* *
9226434 CAGGAGCTACTGTAGCAAAAGCGCG-CCTACGTGGGATCTTCTTTCAGTACTTTTGCTGACAAAG
1 CAGGAGCTACTGTAGCAAAAGAGCGTCC-ACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAAG
*
9226498 CATCCTGCTTAAAGCGTTTTTTACACTATTTGCTCAGAAACGTCTACTCAAAATTATTTTTT
65 CATCCTGCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCAAAATTATTTTTT
* * * * *
9226560 CAGGAGCTACTGTAGCAAAAGTGCGTCCACGTAGAAGCTTCTTTTAGTACTTTTGCTGATAAAGC
1 CAGGAGCTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGC
* ** *
9226625 ATCCTTCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTTTTCGAAATTATTTTTT
66 ATCCTGCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCAAAATTATTTTTT
*
9226686 CAGGAGCTATTGTAGCAAAAGAGCGTCCACGTGGGAGCTT
1 CAGGAGCTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTT
9226726 TTTAAATAAA
Statistics
Matches: 150, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
126 148 0.99
127 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.34
Consensus pattern (126 bp):
CAGGAGCTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGC
ATCCTGCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCAAAATTATTTTTT
Found at i:9226989 original size:14 final size:15
Alignment explanation
Indices: 9226923--9226990 Score: 56
Period size: 14 Copynumber: 4.7 Consensus size: 15
9226913 ATTTTTTCTT
*
9226923 TAAAACCATAAA-CC
1 TAAAACCCTAAACCC
9226937 TAAATACCCTAAAACCC
1 TAAA-ACCCT-AAACCC
*
9226954 T--AACCTTAAACCC
1 TAAAACCCTAAACCC
*
9226967 T-AAATCCTAAA-CC
1 TAAAACCCTAAACCC
9226980 TAAAACCCTAA
1 TAAAACCCTAA
9226991 CCAGCATGAG
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
13 10 0.23
14 23 0.52
15 5 0.11
16 3 0.07
17 3 0.07
ACGTcount: A:0.49, C:0.32, G:0.00, T:0.19
Consensus pattern (15 bp):
TAAAACCCTAAACCC
Found at i:9239753 original size:28 final size:26
Alignment explanation
Indices: 9239704--9239761 Score: 64
Period size: 29 Copynumber: 2.1 Consensus size: 26
9239694 CAATTTCCTA
9239704 TTTAAAAAAGCTTTAATTTTTTAATTATT
1 TTTAAAAAAGCTTTAA-TTTTT-ATT-TT
*
9239733 TTTAAAAAAGTTTTCAA-TTTTATTTT
1 TTTAAAAAAGCTTT-AATTTTTATTTT
9239759 TTT
1 TTT
9239762 GAAATTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 5 0.19
27 3 0.11
28 4 0.15
29 13 0.48
30 2 0.07
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.59
Consensus pattern (26 bp):
TTTAAAAAAGCTTTAATTTTTATTTT
Found at i:9240870 original size:7 final size:7
Alignment explanation
Indices: 9240858--9240883 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
9240848 TGGTCGATTG
9240858 GTATTTA
1 GTATTTA
9240865 GTATTTA
1 GTATTTA
9240872 GTATTTA
1 GTATTTA
9240879 GTATT
1 GTATT
9240884 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:9241588 original size:96 final size:96
Alignment explanation
Indices: 9241458--9241756 Score: 322
Period size: 97 Copynumber: 3.1 Consensus size: 96
9241448 CCTAAACTCC
*
9241458 AAACCCTAATTTATTTAAGTTTTTACTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTAA
1 AAACCCTAATTTATTTGA-TTTTTACTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTAA
9241523 AAAAATTATAATTAATTTACTCAAGTAACCCT
65 AAAAATTATAATTAATTTACTCAAGTAACCCT
* * * *
9241555 GAACCCTAATTTATTTGATTTTTCCTTAAAAACCCTTAACTCTAAACCCTAATCTAATTTTTTTT
1 AAACCCTAATTTATTTGATTTTTACTTAAAAACCCTAAACACTAAACCCTAATCTAA---TTTTT
*
9241620 AAAAAAA-T-TAATTAAATTACTCAAGTAACCCT
63 AAAAAAATTATAATTAATTTACTCAAGTAACCCT
* * * *** *
9241652 AAACCTTAATTTAATTGATTTTTTCTTAAAAAATAATAAACACGAAA-CCTAAT-TCAA-TTTT-
1 AAACCCTAATTTATTTGATTTTTACTT-AAAAACCCTAAACACTAAACCCTAATCT-AATTTTTA
* * ** **
9241713 GAAAAATTCATAATTAATTTAATTTACAAACCCT
64 AAAAAATT-ATAATTAATTTACTCAAGTAACCCT
9241747 AAACCCTAAT
1 AAACCCTAAT
9241757 CCCTTATTTA
Statistics
Matches: 170, Mismatches: 24, Indels: 18
0.80 0.11 0.08
Matches are distributed among these distances:
92 5 0.03
93 5 0.03
95 27 0.16
96 37 0.22
97 70 0.41
98 14 0.08
99 12 0.07
ACGTcount: A:0.42, C:0.18, G:0.03, T:0.37
Consensus pattern (96 bp):
AAACCCTAATTTATTTGATTTTTACTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTAAA
AAAATTATAATTAATTTACTCAAGTAACCCT
Found at i:9241965 original size:69 final size:69
Alignment explanation
Indices: 9241854--9241992 Score: 251
Period size: 69 Copynumber: 2.0 Consensus size: 69
9241844 CCTAACCGTA
*
9241854 GGACACACGGGTAAAACACATCCTTGAGGAAGCGTTTTGCCTACTTGGACATAAAGTGCCCCCTT
1 GGACACACGGGCAAAACACATCCTTGAGGAAGCGTTTTGCCTACTTGGACATAAAGTGCCCCCTT
9241919 AAGG
66 AAGG
* *
9241923 GGACACACGGGCAAAACGCATCCTTGAGGAAGCGTTTTGCCTACTTGGACATAAAGTGCGCCCTT
1 GGACACACGGGCAAAACACATCCTTGAGGAAGCGTTTTGCCTACTTGGACATAAAGTGCCCCCTT
9241988 AAGG
66 AAGG
9241992 G
1 G
9241993 AGTGATTTTT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 67 1.00
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (69 bp):
GGACACACGGGCAAAACACATCCTTGAGGAAGCGTTTTGCCTACTTGGACATAAAGTGCCCCCTT
AAGG
Found at i:9243012 original size:23 final size:23
Alignment explanation
Indices: 9242986--9243061 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
9242976 GCACTACCTA
9242986 ATTAATATTAAAAATTTTAAAAC
1 ATTAATATTAAAAATTTTAAAAC
* * ** * *
9243009 ATTATTA-TAGACTTTTTCACTACC
1 ATTAATATTAAAAATTTT-A-AAAC
9243033 TTATTAATATTAAAAATTTTAAAAC
1 --ATTAATATTAAAAATTTTAAAAC
9243058 ATTA
1 ATTA
9243062 TTATAGACTT
Statistics
Matches: 36, Mismatches: 12, Indels: 10
0.62 0.21 0.17
Matches are distributed among these distances:
22 7 0.19
23 11 0.31
24 2 0.06
25 2 0.06
26 7 0.19
27 7 0.19
ACGTcount: A:0.46, C:0.09, G:0.01, T:0.43
Consensus pattern (23 bp):
ATTAATATTAAAAATTTTAAAAC
Found at i:9243039 original size:49 final size:49
Alignment explanation
Indices: 9242977--9243074 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
9242967 AATTATTCAG
9242977 CACTACCTAATTAATATTAAAAATTTTAAAACATTATTATAGACTTTTT
1 CACTACCTAATTAATATTAAAAATTTTAAAACATTATTATAGACTTTTT
*
9243026 CACTACCTTATTAATATTAAAAATTTTAAAACATTATTATAGACTTTTT
1 CACTACCTAATTAATATTAAAAATTTTAAAACATTATTATAGACTTTTT
9243075 TTTTTGCACA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.42, C:0.12, G:0.02, T:0.44
Consensus pattern (49 bp):
CACTACCTAATTAATATTAAAAATTTTAAAACATTATTATAGACTTTTT
Found at i:9244460 original size:21 final size:21
Alignment explanation
Indices: 9244435--9244481 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
9244425 AAAACATAGA
*
9244435 CGTGTGTCTAACACACACGCC
1 CGTGTGGCTAACACACACGCC
**
9244456 CGTGTGGCTAATTCACACGCC
1 CGTGTGGCTAACACACACGCC
*
9244477 TGTGT
1 CGTGT
9244482 TCCCAAACGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.19, C:0.32, G:0.23, T:0.26
Consensus pattern (21 bp):
CGTGTGGCTAACACACACGCC
Found at i:9247768 original size:15 final size:15
Alignment explanation
Indices: 9247748--9247779 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
9247738 GGCCGTATGA
9247748 TAGTTGGGCTAGGTG
1 TAGTTGGGCTAGGTG
9247763 TAGTTGGGCTAGGTG
1 TAGTTGGGCTAGGTG
9247778 TA
1 TA
9247780 ATTTTGAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.16, C:0.06, G:0.44, T:0.34
Consensus pattern (15 bp):
TAGTTGGGCTAGGTG
Found at i:9248429 original size:41 final size:41
Alignment explanation
Indices: 9248360--9248551 Score: 294
Period size: 41 Copynumber: 4.7 Consensus size: 41
9248350 TAGGCTCGAG
* * * * * *
9248360 GCCTAATACAATTACACCGGTACAAAGCCTGCTAGGCACAAA
1 GCCTAATATAAAT-CACCGGCACGAAGCCTACTAGGCACAGA
* *
9248402 GCCTGATATAAATCACCGGCATGAAGCCTACTAGGCACAGA
1 GCCTAATATAAATCACCGGCACGAAGCCTACTAGGCACAGA
9248443 GCCTAATATAAATCACCGGCACGAAGCCTACTAGGCACAGA
1 GCCTAATATAAATCACCGGCACGAAGCCTACTAGGCACAGA
*
9248484 GCCTAATATAAGTCACCGGCACGAAGCCTACTAGGCACAGA
1 GCCTAATATAAATCACCGGCACGAAGCCTACTAGGCACAGA
9248525 GCCTAATATAAATCACCGGCACGAAGC
1 GCCTAATATAAATCACCGGCACGAAGC
9248552 TTGCTAAACT
Statistics
Matches: 138, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
41 128 0.93
42 10 0.07
ACGTcount: A:0.36, C:0.29, G:0.20, T:0.16
Consensus pattern (41 bp):
GCCTAATATAAATCACCGGCACGAAGCCTACTAGGCACAGA
Found at i:9248575 original size:82 final size:82
Alignment explanation
Indices: 9248360--9248575 Score: 263
Period size: 82 Copynumber: 2.6 Consensus size: 82
9248350 TAGGCTCGAG
* * * * * ** *
9248360 GCCTAATACAATTACACCGGTACAAAGCCTGCTAGGCACAAAGCCTGATATAAATCACCGGCATG
1 GCCTAATATAAAT-CACCGGCACGAAGCCTACTAAACACAAAGCCTGATATAAATCACCGGCACG
9248425 AAGCCTACTAGGCACAGA
65 AAGCCTACTAGGCACAGA
** * * *
9248443 GCCTAATATAAATCACCGGCACGAAGCCTACTAGGCACAGAGCCTAATATAAGTCACCGGCACGA
1 GCCTAATATAAATCACCGGCACGAAGCCTACTAAACACAAAGCCTGATATAAATCACCGGCACGA
9248508 AGCCTACTAGGCACAGA
66 AGCCTACTAGGCACAGA
* * *
9248525 GCCTAATATAAATCACCGGCACGAAGCTTGCTAAACTCAAAGTCC-GATATA
1 GCCTAATATAAATCACCGGCACGAAGCCTACTAAACACAAAG-CCTGATATA
9248576 TTATCTCTAA
Statistics
Matches: 116, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
82 103 0.89
83 13 0.11
ACGTcount: A:0.36, C:0.28, G:0.19, T:0.17
Consensus pattern (82 bp):
GCCTAATATAAATCACCGGCACGAAGCCTACTAAACACAAAGCCTGATATAAATCACCGGCACGA
AGCCTACTAGGCACAGA
Found at i:9253789 original size:3 final size:3
Alignment explanation
Indices: 9253783--9253827 Score: 54
Period size: 3 Copynumber: 15.0 Consensus size: 3
9253773 TAAAAAAAAG
* * * *
9253783 TAA TAA TAA TAA TGA TAA TAA TAT TAA TAA TAA CAA TGA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
9253828 AAAAAATCTG
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:9255502 original size:50 final size:50
Alignment explanation
Indices: 9255395--9255491 Score: 131
Period size: 50 Copynumber: 1.9 Consensus size: 50
9255385 TCTGGGAAAC
* * * **
9255395 AAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTACACTGCCCGAGAAGT
1 AAGATTTGCTGTTGTAGCTTCAATCTATTCCACTACAATGCCAAAGAAGT
**
9255445 AAGATTTGCTGTTGTAGCTTCAATCTATTCCACTGTAATGCCAAAGA
1 AAGATTTGCTGTTGTAGCTTCAATCTATTCCACTACAATGCCAAAGA
9255492 GATAGGATTT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 40 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (50 bp):
AAGATTTGCTGTTGTAGCTTCAATCTATTCCACTACAATGCCAAAGAAGT
Found at i:9255885 original size:132 final size:132
Alignment explanation
Indices: 9255747--9256121 Score: 495
Period size: 132 Copynumber: 2.8 Consensus size: 132
9255737 TGCTGCTCAG
* * *
9255747 GGAGACATGATTTACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAGGACTGGTGGCTTA
1 GGAGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTA
* * * * *
9255812 AATCTGCTTCTCTACTACCTTGAGAAGATAAGATTTGCCGTTTTCGATCTA-CTCCACT-ACTGT
66 AATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATC-AGCTCCACTGACAG-
9255875 TTAC-
129 -TACA
* * * *
9255879 GGAGACAGGATCTACAATCTTCAACCTACTCCACTGTTGCTCAGGGAGATAAGATTGGTGGCTTA
1 GGAGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTA
* * * * * *
9255944 AATCTGCTTCCCTACTTCTTTGGGAAGATAAGATTCGCAGCCTTCGATCAGCTCCGCTGTCAGTA
66 AATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCAGCTCCACTGACAGTA
9256009 CA
131 CA
* * * *
9256011 GGAAGGCAAGATCTGCTATCTTCAACCTACTCCACTGCTGCTTAGGGAGATAGGACTGGTGGCTT
1 GG-AGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTT
9256076 AAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTC
65 AAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTC
9256122 TCCAATCCAC
Statistics
Matches: 210, Mismatches: 29, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
131 4 0.02
132 108 0.51
133 98 0.47
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (132 bp):
GGAGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTA
AATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCAGCTCCACTGACAGTA
CA
Found at i:9260852 original size:11 final size:11
Alignment explanation
Indices: 9260836--9260868 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
9260826 CGATGGGTAC
9260836 CAAAGAATATA
1 CAAAGAATATA
9260847 CAAAGAATATA
1 CAAAGAATATA
9260858 CAAAGAATATA
1 CAAAGAATATA
9260869 TGAATTTATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.64, C:0.09, G:0.09, T:0.18
Consensus pattern (11 bp):
CAAAGAATATA
Found at i:9263202 original size:145 final size:145
Alignment explanation
Indices: 9262939--9263233 Score: 563
Period size: 145 Copynumber: 2.0 Consensus size: 145
9262929 CTTGTTTATT
*
9262939 CCATTAATAGCATGATTGGGTAGCGGATTCTCTGTACTGGACCCAAATTGATAAACCTTTCAACC
1 CCATTAATAGCATGATTGGGTAGCAGATTCTCTGTACTGGACCCAAATTGATAAACCTTTCAACC
*
9263004 AGTTTCTTAAAAGCAGTGCAATTTTCTATAGAATGCCCTGTAATTCCCACATGATAATCGCACTG
66 AGTTTCTTAAAAGCAGTGCAATTTTCTATAGAATGCCCCGTAATTCCCACATGATAATCGCACTG
9263069 TGCGTTTGTATCATA
131 TGCGTTTGTATCATA
9263084 CCATTAATAGCATGATTGGGTAGCAGATTCTCTGTACTGGACCCAAATTGATAAACCTTTCAACC
1 CCATTAATAGCATGATTGGGTAGCAGATTCTCTGTACTGGACCCAAATTGATAAACCTTTCAACC
*
9263149 AGTTTCTTAAAAGTAGTGCAATTTTCTATAGAATGCCCCGTAATTCCCACATGATAATCGCACTG
66 AGTTTCTTAAAAGCAGTGCAATTTTCTATAGAATGCCCCGTAATTCCCACATGATAATCGCACTG
9263214 TGCGTTTGTATCATA
131 TGCGTTTGTATCATA
9263229 CCATT
1 CCATT
9263234 TAGGGTACGG
Statistics
Matches: 147, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
145 147 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.33
Consensus pattern (145 bp):
CCATTAATAGCATGATTGGGTAGCAGATTCTCTGTACTGGACCCAAATTGATAAACCTTTCAACC
AGTTTCTTAAAAGCAGTGCAATTTTCTATAGAATGCCCCGTAATTCCCACATGATAATCGCACTG
TGCGTTTGTATCATA
Found at i:9268758 original size:3 final size:3
Alignment explanation
Indices: 9268697--9268741 Score: 54
Period size: 3 Copynumber: 15.0 Consensus size: 3
9268687 TTCAAAAAAG
* * * *
9268697 TAA TAA TAA TAA TGA TAA TAA TAT TAA TAA TAA CAA TGA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
9268742 AAAAATCTGA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:9268861 original size:16 final size:16
Alignment explanation
Indices: 9268840--9268908 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
9268830 TTTGGTTCGC
9268840 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
9268856 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
9268872 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
9268889 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
9268905 TGTA
1 TGTA
9268909 ATAGCTAATC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:9268886 original size:33 final size:32
Alignment explanation
Indices: 9268840--9268908 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
9268830 TTTGGTTCGC
9268840 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
9268872 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGGATTAGAGG
9268905 TGTA
1 TGTA
9268909 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.17
33 30 0.83
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:9268973 original size:44 final size:45
Alignment explanation
Indices: 9268889--9268979 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
9268879 GGATTAGAGG
* * *
9268889 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
9268934 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
9268978 TG
1 TG
9268980 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:9269165 original size:18 final size:19
Alignment explanation
Indices: 9269144--9269180 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
9269134 TTATTATTAA
9269144 ATAT-ATTT-TAATTAAAAT
1 ATATAATTTATAA-TAAAAT
9269162 ATATAATTTATAATAAAAT
1 ATATAATTTATAATAAAAT
9269181 TCTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.24
19 10 0.59
20 3 0.18
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATATAATTTATAATAAAAT
Found at i:9269334 original size:59 final size:59
Alignment explanation
Indices: 9269149--9269335 Score: 141
Period size: 59 Copynumber: 3.1 Consensus size: 59
9269139 ATTAAATATA
* * *
9269149 TTTTAATTAAAATATATAATTTATAATAAAATTCTTAATAATCAATATTCTTATATGAATT
1 TTTTAATTAAAATATATGA-TT-TAATAAAATTCTTAATATTAAATATTCTTATATGAATT
** * * * * * * * *
9269210 TACTCAAATCATAATATATGATACT-ATAAAA-T-ATAAT-TAGAAATAAT-TAATATTAAATAT
1 T--TTTAATTAAAATATATGAT-TTAATAAAATTCTTAATAT-TAAATATTCTTATA-TGAAT-T
9269270 ATTTTAATTAAAATATATGATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATT
1 -TTTTAATTAAAATATATGATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATT
9269330 TTTTAA
1 TTTTAA
9269336 AATCATAATA
Statistics
Matches: 91, Mismatches: 23, Indels: 26
0.65 0.16 0.19
Matches are distributed among these distances:
58 5 0.05
59 40 0.44
60 4 0.04
61 22 0.24
62 7 0.08
63 13 0.14
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.45
Consensus pattern (59 bp):
TTTTAATTAAAATATATGATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATT
Found at i:9269345 original size:120 final size:120
Alignment explanation
Indices: 9269124--9269413 Score: 429
Period size: 120 Copynumber: 2.4 Consensus size: 120
9269114 TTAATCATAT
*
9269124 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTATAATAAAATTCTTAATA
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAA-TT-TAATAAAATTCTTAATA
* * *
9269189 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
64 ATAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * *
9269246 -TTAGAAATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAT
1 TTTA-AAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
**
9269310 TAAATATTCTTATATGAATTTTTTAAAATCATAATATATAATACTATAAAATATAA
65 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* ** *
9269366 TTTAACATAATTATTATTAAATATAAGTTAATAAAAATATATAATTTA
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTA
9269414 TCATCATACT
Statistics
Matches: 151, Mismatches: 15, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
120 106 0.70
121 8 0.05
122 37 0.25
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (120 bp):
TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:9281225 original size:15 final size:15
Alignment explanation
Indices: 9281205--9281251 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
9281195 ACAAAATCTC
*
9281205 ATAAAAACATAGTTT
1 ATAAAAACATACTTT
*
9281220 ATAAAACCATACTTT
1 ATAAAAACATACTTT
9281235 A-AAAATACATATCTTT
1 ATAAAA-ACATA-CTTT
9281251 A
1 A
9281252 AAATATAAGC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 4 0.15
15 18 0.67
16 5 0.19
ACGTcount: A:0.51, C:0.13, G:0.02, T:0.34
Consensus pattern (15 bp):
ATAAAAACATACTTT
Found at i:9281298 original size:13 final size:13
Alignment explanation
Indices: 9281280--9281311 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
9281270 GAGCACGTAT
9281280 AAAACATAACTTG
1 AAAACATAACTTG
*
9281293 AAAACATGACTTG
1 AAAACATAACTTG
9281306 AAAACA
1 AAAACA
9281312 GAGTTTATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.16, G:0.09, T:0.19
Consensus pattern (13 bp):
AAAACATAACTTG
Found at i:9283761 original size:84 final size:83
Alignment explanation
Indices: 9283615--9283825 Score: 260
Period size: 84 Copynumber: 2.5 Consensus size: 83
9283605 CCTCGGCCTC
* * * * * * *
9283615 TCCAGCTCCGGAAACTTCTCCCTCGCCAGCCGAAACCCCGGAATTGGCTCTAGAAACTTCGCCTT
1 TCCAGCTCCCGAAACTTCTCCCT-GCCAACAGAAACCCCGGAAATAGCTCCAGAAACCTCGCCTT
*
9283680 CTTTCCCACCATCCGTGTA
65 CTCTCCCACCATCCGTGTA
** *
9283699 TCCAGCTCCCGAAACTTCTCCCATGCCAATGGAAACCCCGGAAATAGTTCCAGAAACCTCGCCTT
1 TCCAGCTCCCGAAACTTCTCCC-TGCCAACAGAAACCCCGGAAATAGCTCCAGAAACCTCGCCTT
9283764 CTCTCCCACCATCCGTGTA
65 CTCTCCCACCATCCGTGTA
** * *
9283783 TCTGGCCCCCGAAACTTCTCCCTTGCCAACAGAAAACCCGGAA
1 TCCAGCTCCCGAAACTTCTCCC-TGCCAACAGAAACCCCGGAA
9283826 GCAGCTCCTG
Statistics
Matches: 109, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
84 108 0.99
85 1 0.01
ACGTcount: A:0.24, C:0.39, G:0.16, T:0.21
Consensus pattern (83 bp):
TCCAGCTCCCGAAACTTCTCCCTGCCAACAGAAACCCCGGAAATAGCTCCAGAAACCTCGCCTTC
TCTCCCACCATCCGTGTA
Found at i:9284575 original size:20 final size:21
Alignment explanation
Indices: 9284552--9284591 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
9284542 AAAAGCATAG
*
9284552 CAATT-AATTAAAAACTTTAT
1 CAATTCAATCAAAAACTTTAT
*
9284572 CAATTCAATCAAAAATTTTA
1 CAATTCAATCAAAAACTTTA
9284592 AAAATATAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (21 bp):
CAATTCAATCAAAAACTTTAT
Found at i:9290352 original size:31 final size:31
Alignment explanation
Indices: 9290313--9290382 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
9290303 AAATGAGTAC
9290313 ATTTTTATTATATA-TA-TAACTAGTAAAAAG
1 ATTTTTATTATATATTATTAACTAGT-AAAAG
* *
9290343 ATATTTTATTATTTATTATTAATTAGTAAAAG
1 AT-TTTTATTATATATTATTAACTAGTAAAAG
9290375 ATTTTTAT
1 ATTTTTAT
9290383 ATGATAAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
30 2 0.06
31 17 0.49
32 9 0.26
33 7 0.20
ACGTcount: A:0.41, C:0.01, G:0.06, T:0.51
Consensus pattern (31 bp):
ATTTTTATTATATATTATTAACTAGTAAAAG
Found at i:9290492 original size:18 final size:19
Alignment explanation
Indices: 9290469--9290514 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
9290459 TGTAATATTT
*
9290469 ATATTTGTTATTA-AATAG
1 ATATTTATTATTATAATAG
9290487 ATATTTATTATTATAATA-
1 ATATTTATTATTATAATAG
*
9290505 ATAATTATTA
1 ATATTTATTA
9290515 ATTGTTGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 21 0.84
19 4 0.16
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.52
Consensus pattern (19 bp):
ATATTTATTATTATAATAG
Found at i:9290678 original size:20 final size:20
Alignment explanation
Indices: 9290655--9290692 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
9290645 TACTTAATAT
9290655 TTAAG-AAATAATAATAATTA
1 TTAAGTAAAT-ATAATAATTA
*
9290675 TTAAGTTAATATAATAAT
1 TTAAGTAAATATAATAAT
9290693 ATAATAAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.39
Consensus pattern (20 bp):
TTAAGTAAATATAATAATTA
Found at i:9290981 original size:29 final size:29
Alignment explanation
Indices: 9290940--9290997 Score: 66
Period size: 29 Copynumber: 2.0 Consensus size: 29
9290930 TTTTTTAGTA
9290940 GGGTTCATGTTGAATA-AATGATTGAATTAG
1 GGGTTCATGTTG-ATAGAATGATTG-ATTAG
* *
9290970 GGGTTTAT-TTGATAGAATTATTGATTAG
1 GGGTTCATGTTGATAGAATGATTGATTAG
9290998 ATTTATTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
28 8 0.32
29 10 0.40
30 7 0.28
ACGTcount: A:0.31, C:0.02, G:0.26, T:0.41
Consensus pattern (29 bp):
GGGTTCATGTTGATAGAATGATTGATTAG
Found at i:9297610 original size:43 final size:43
Alignment explanation
Indices: 9297529--9297611 Score: 105
Period size: 42 Copynumber: 1.9 Consensus size: 43
9297519 TTTATTGACT
* *
9297529 TATGAAATAAAAATACCCTCATAAAAATATAATTTAATTTCTC
1 TATGAAATAAAAACACCCTCATAAAAATATAATATAATTTCTC
* * *
9297572 TATGATAT-AAAACACCTTCATAAAAATCTAAATATAATTT
1 TATGAAATAAAAACACCCTCATAAAAATAT-AATATAATTT
9297612 TTTATAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 18 0.53
43 16 0.47
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.35
Consensus pattern (43 bp):
TATGAAATAAAAACACCCTCATAAAAATATAATATAATTTCTC
Found at i:9300080 original size:18 final size:19
Alignment explanation
Indices: 9300048--9300087 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
9300038 TTAAAAGATT
*
9300048 TTTAATATTTAAAATAGAA
1 TTTAAAATTTAAAATAGAA
9300067 TTTAAAATTT-AAATAGAA
1 TTTAAAATTTAAAATAGAA
9300085 TTT
1 TTT
9300088 TTTAAAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (19 bp):
TTTAAAATTTAAAATAGAA
Found at i:9317585 original size:19 final size:20
Alignment explanation
Indices: 9317558--9317605 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
9317548 GTTGGTAAAT
*
9317558 ACATGTGTA-ATAATAATAA
1 ACATATGTATATAATAATAA
*
9317577 ACATATGTATTTAATAATAA
1 ACATATGTATATAATAATAA
9317597 A-ATATGTAT
1 ACATATGTAT
9317606 TGCTTATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.50, C:0.04, G:0.08, T:0.38
Consensus pattern (20 bp):
ACATATGTATATAATAATAA
Found at i:9317606 original size:19 final size:20
Alignment explanation
Indices: 9317568--9317606 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
9317558 ACATGTGTAA
9317568 TAATAATAAACATATGTATT
1 TAATAATAAACATATGTATT
9317588 TAATAATAAA-ATATGTATT
1 TAATAATAAACATATGTATT
9317607 GCTTATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (20 bp):
TAATAATAAACATATGTATT
Found at i:9317640 original size:8 final size:8
Alignment explanation
Indices: 9317627--9317662 Score: 72
Period size: 8 Copynumber: 4.5 Consensus size: 8
9317617 TAAGTAAATA
9317627 TATATTAT
1 TATATTAT
9317635 TATATTAT
1 TATATTAT
9317643 TATATTAT
1 TATATTAT
9317651 TATATTAT
1 TATATTAT
9317659 TATA
1 TATA
9317663 ATTAAAACTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
TATATTAT
Found at i:9320878 original size:67 final size:67
Alignment explanation
Indices: 9320770--9320898 Score: 222
Period size: 67 Copynumber: 1.9 Consensus size: 67
9320760 TTTCCAATTC
* *
9320770 AGAGAGCACACTACTGCAAACCTCATTTCTTATAGCGGGATTACCAGTCCAGTCTAAATCCCTTG
1 AGAGAGCACACTACCGCAAACCTCATTTCTTATAGCGGGATTACCAGTCCAGGCTAAATCCCTTG
9320835 CA
66 CA
* *
9320837 AGAGAGCACACTCCCGCGAACCTCATTTCTTATAGCGGGATTACCAGTCCAGGCTAAATCCC
1 AGAGAGCACACTACCGCAAACCTCATTTCTTATAGCGGGATTACCAGTCCAGGCTAAATCCC
9320899 CTGTAATATA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 58 1.00
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (67 bp):
AGAGAGCACACTACCGCAAACCTCATTTCTTATAGCGGGATTACCAGTCCAGGCTAAATCCCTTG
CA
Found at i:9324983 original size:57 final size:57
Alignment explanation
Indices: 9324914--9325030 Score: 225
Period size: 57 Copynumber: 2.1 Consensus size: 57
9324904 CATAGAATAC
9324914 ATGAGTTAAATACTCATGAACTGAATATGGAATGGATAGTGCCATTGTTTAAATGAT
1 ATGAGTTAAATACTCATGAACTGAATATGGAATGGATAGTGCCATTGTTTAAATGAT
*
9324971 ATGAGTTAAATACTCATGAATTGAATATGGAATGGATAGTGCCATTGTTTAAATGAT
1 ATGAGTTAAATACTCATGAACTGAATATGGAATGGATAGTGCCATTGTTTAAATGAT
9325028 ATG
1 ATG
9325031 TGAACCAATT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.34
Consensus pattern (57 bp):
ATGAGTTAAATACTCATGAACTGAATATGGAATGGATAGTGCCATTGTTTAAATGAT
Found at i:9328206 original size:18 final size:18
Alignment explanation
Indices: 9328185--9328226 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
9328175 TTAAAATAAA
*
9328185 ATTTTATGCTAAAATTTT
1 ATTTAATGCTAAAATTTT
9328203 ATTTAATGCTAAAATTTT
1 ATTTAATGCTAAAATTTT
9328221 ATTTAA
1 ATTTAA
9328227 ATAGGTGGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (18 bp):
ATTTAATGCTAAAATTTT
Found at i:9331891 original size:171 final size:170
Alignment explanation
Indices: 9331601--9331931 Score: 563
Period size: 171 Copynumber: 1.9 Consensus size: 170
9331591 AAAGAGTTCC
* * * *
9331601 AGAATGGGAAAAAGGCAATGTTAGAAGAAATTTCAACACTCAACAAGAATGACATGTGAGAGCTT
1 AGAAAGGGAAAAAGGCAATGGTAGAAGAAATTTCAACACTCAACAAGAATGACACGTGAAAGCTT
*
9331666 GTACCAAAATCATTGGATGCTGATTTTGTTGCCTGTAAATGGGTTTACAAATTAAAAAAAATGAG
66 GTACCAAAATCATTGGATGCTGATTTTGTTACCTGTAAATGGGTTTACAAATT-AAAAAAATGAG
*
9331731 TTGATGGTACAATCGAGAGGTCCAAATCTCGATTTTGTACT
130 TTGATGGTACAATCGAGAGGTACAAATCTCGATTTTGTACT
*
9331772 AGAAAGGGAAAAATGCAATGGTAGAAGAAATTTCAACACTCAACAAGAATGACACGTGAAAGCTT
1 AGAAAGGGAAAAAGGCAATGGTAGAAGAAATTTCAACACTCAACAAGAATGACACGTGAAAGCTT
* *
9331837 GTACCAAAATCATTGGATGTTGATTTTGTTACTTGTAAATGGGTTTACAAATTAAAAAAATGAGT
66 GTACCAAAATCATTGGATGCTGATTTTGTTACCTGTAAATGGGTTTACAAATTAAAAAAATGAGT
*
9331902 TGATGGTACAATCGAGAGGTATAAATCTCG
131 TGATGGTACAATCGAGAGGTACAAATCTCG
9331932 CCTTGTTGCT
Statistics
Matches: 150, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
170 40 0.27
171 110 0.73
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.27
Consensus pattern (170 bp):
AGAAAGGGAAAAAGGCAATGGTAGAAGAAATTTCAACACTCAACAAGAATGACACGTGAAAGCTT
GTACCAAAATCATTGGATGCTGATTTTGTTACCTGTAAATGGGTTTACAAATTAAAAAAATGAGT
TGATGGTACAATCGAGAGGTACAAATCTCGATTTTGTACT
Found at i:9336384 original size:11 final size:13
Alignment explanation
Indices: 9336368--9336396 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
9336358 GAATTTTTTT
9336368 AAAAAAA-AGTAA
1 AAAAAAACAGTAA
9336380 AAAAAAACAGTAA
1 AAAAAAACAGTAA
9336393 AAAA
1 AAAA
9336397 TAGTTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.83, C:0.03, G:0.07, T:0.07
Consensus pattern (13 bp):
AAAAAAACAGTAA
Done.