Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 46 of 221
Found at i:13082449 original size:22 final size:23
Alignment explanation
Indices: 13082396--13082449 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
13082386 CCCAATTTTA
*
13082396 ATTAAAATTAAAATTATATTTGT
1 ATTAAAATTAAAACTATATTTGT
*
13082419 AATAAAATTAAAACTA-A-TTGTT
1 ATTAAAATTAAAACTATATTTG-T
13082441 ATTAAAATT
1 ATTAAAATT
13082450 GTATCAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.11
22 10 0.37
23 14 0.52
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.43
Consensus pattern (23 bp):
ATTAAAATTAAAACTATATTTGT
Found at i:13082690 original size:52 final size:52
Alignment explanation
Indices: 13082612--13082711 Score: 182
Period size: 52 Copynumber: 1.9 Consensus size: 52
13082602 CATGTTCACC
* *
13082612 ATCCTGTTCACTGGACATTGAATCACTTGGGTCTCTTTCTATTAAACACACT
1 ATCCTATTCACCGGACATTGAATCACTTGGGTCTCTTTCTATTAAACACACT
13082664 ATCCTATTCACCGGACATTGAATCACTTGGGTCTCTTTCTATTAAACA
1 ATCCTATTCACCGGACATTGAATCACTTGGGTCTCTTTCTATTAAACA
13082712 ATTAAAAGGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (52 bp):
ATCCTATTCACCGGACATTGAATCACTTGGGTCTCTTTCTATTAAACACACT
Found at i:13082913 original size:16 final size:16
Alignment explanation
Indices: 13082892--13082925 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
13082882 TTTATAGCAA
13082892 TAAACATACTTAATTT
1 TAAACATACTTAATTT
13082908 TAAACATACTTAATTT
1 TAAACATACTTAATTT
13082924 TA
1 TA
13082926 TTCTGTCACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (16 bp):
TAAACATACTTAATTT
Found at i:13083134 original size:9 final size:9
Alignment explanation
Indices: 13083122--13083159 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
13083112 ATCATCCTCA
*
13083122 TCGTCGTCG
1 TCGTCATCG
13083131 TCGTCATCG
1 TCGTCATCG
13083140 TCGTCATCG
1 TCGTCATCG
*
13083149 TCTTCATCG
1 TCGTCATCG
13083158 TC
1 TC
13083160 CCTTTTGTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.08, C:0.34, G:0.21, T:0.37
Consensus pattern (9 bp):
TCGTCATCG
Found at i:13085442 original size:45 final size:45
Alignment explanation
Indices: 13085378--13085473 Score: 158
Period size: 45 Copynumber: 2.1 Consensus size: 45
13085368 AGCAAGGCAA
13085378 TAATGTGAAATTTCTAGCTAATGTTCCATTATATAAACAATAGGC
1 TAATGTGAAATTTCTAGCTAATGTTCCATTATATAAACAATAGGC
* *
13085423 TAATGTGAAATTT-TGAGCTAATTTTCCATTATATAAACAATCGGC
1 TAATGTGAAATTTCT-AGCTAATGTTCCATTATATAAACAATAGGC
13085468 TAATGT
1 TAATGT
13085474 TCCATTTATA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
44 1 0.02
45 47 0.98
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (45 bp):
TAATGTGAAATTTCTAGCTAATGTTCCATTATATAAACAATAGGC
Found at i:13086925 original size:10 final size:10
Alignment explanation
Indices: 13086912--13086943 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
13086902 TGTCAAAATT
13086912 ATATATAATG
1 ATATATAATG
*
13086922 ATATATAATA
1 ATATATAATG
13086932 ATATATAATG
1 ATATATAATG
13086942 AT
1 AT
13086944 GGCTCATGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (10 bp):
ATATATAATG
Found at i:13091874 original size:12 final size:12
Alignment explanation
Indices: 13091857--13091921 Score: 51
Period size: 12 Copynumber: 5.2 Consensus size: 12
13091847 ATTTATCCAA
13091857 TTTTTATTTTAT
1 TTTTTATTTTAT
13091869 TTTTTATTTT-T
1 TTTTTATTTTAT
* *
13091880 GTCTTTAGTTTAAT
1 -TTTTTA-TTTTAT
* *
13091894 TTTTATATTCTAA
1 TTTT-TATTTTAT
*
13091907 TCTTTATTTTAT
1 TTTTTATTTTAT
13091919 TTT
1 TTT
13091922 CTACTGGCAG
Statistics
Matches: 39, Mismatches: 10, Indels: 8
0.68 0.18 0.14
Matches are distributed among these distances:
11 1 0.03
12 23 0.59
13 12 0.31
14 3 0.08
ACGTcount: A:0.18, C:0.05, G:0.03, T:0.74
Consensus pattern (12 bp):
TTTTTATTTTAT
Found at i:13095818 original size:33 final size:35
Alignment explanation
Indices: 13095781--13095848 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 35
13095771 GTATTTTTGA
* *
13095781 CACTG-TACTGAGATGGGCTAAGGCCCAA-ACTGT
1 CACTGATACTGAAAAGGGCTAAGGCCCAAGACTGT
**
13095814 CACTGATACTGAAAAGGGCTTTGGCCCAAGACTGT
1 CACTGATACTGAAAAGGGCTAAGGCCCAAGACTGT
13095849 TCAACTGTGC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 5 0.17
34 19 0.66
35 5 0.17
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (35 bp):
CACTGATACTGAAAAGGGCTAAGGCCCAAGACTGT
Found at i:13096582 original size:26 final size:26
Alignment explanation
Indices: 13096552--13096613 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
13096542 CCTGTAAGTG
13096552 TTCTGAAACTGATAGATGCTATGATA
1 TTCTGAAACTGATAGATGCTATGATA
* *
13096578 TTCTGAAACTGATATATGTTATGATA
1 TTCTGAAACTGATAGATGCTATGATA
13096604 TTCTGAAACT
1 TTCTGAAACT
13096614 ACTGTAGGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (26 bp):
TTCTGAAACTGATAGATGCTATGATA
Found at i:13105141 original size:42 final size:42
Alignment explanation
Indices: 13105011--13105140 Score: 215
Period size: 42 Copynumber: 3.1 Consensus size: 42
13105001 CCTGGCGACA
*
13105011 TGGCAATGTGACCCACACAGCCTAGACACACGGATGTGTCCT
1 TGGCAATGTGACCCACACAGCCTAGACACACGGGTGTGTCCT
*
13105053 TGGCAATGTGACCCACACAGCCTAGACACACTGGTGTGTCCT
1 TGGCAATGTGACCCACACAGCCTAGACACACGGGTGTGTCCT
* * *
13105095 TGGCCATGTGACCCATACGGCCTAGACACACGGGTGTGTCCT
1 TGGCAATGTGACCCACACAGCCTAGACACACGGGTGTGTCCT
13105137 TGGC
1 TGGC
13105141 CGTGTGAGTT
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 82 1.00
ACGTcount: A:0.22, C:0.31, G:0.26, T:0.21
Consensus pattern (42 bp):
TGGCAATGTGACCCACACAGCCTAGACACACGGGTGTGTCCT
Found at i:13123261 original size:27 final size:31
Alignment explanation
Indices: 13123226--13123296 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 31
13123216 TTTTACACGT
*
13123226 TCCTAATTTGATA-TT-TAAATT-TTTTTTA
1 TCCTAATTTGATACTTGAAAATTCTTTTTTA
*
13123254 -CCTAATTTAATACTTGAAAATTCTTTTTTA
1 TCCTAATTTGATACTTGAAAATTCTTTTTTA
13123284 TCC-AATTTGATAC
1 TCCTAATTTGATAC
13123297 ATAAGCTTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
27 11 0.31
28 2 0.06
29 5 0.14
30 16 0.44
31 2 0.06
ACGTcount: A:0.31, C:0.13, G:0.04, T:0.52
Consensus pattern (31 bp):
TCCTAATTTGATACTTGAAAATTCTTTTTTA
Found at i:13123796 original size:10 final size:10
Alignment explanation
Indices: 13123781--13123811 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
13123771 AAGTTCAAAT
*
13123781 ACCAAATCAA
1 ACCAAAGCAA
13123791 ACCAAAGCAA
1 ACCAAAGCAA
13123801 ACCAAAGCAA
1 ACCAAAGCAA
13123811 A
1 A
13123812 AGATTAGGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.61, C:0.29, G:0.06, T:0.03
Consensus pattern (10 bp):
ACCAAAGCAA
Found at i:13135595 original size:23 final size:23
Alignment explanation
Indices: 13135534--13135934 Score: 373
Period size: 23 Copynumber: 17.3 Consensus size: 23
13135524 TGAGCAGCAT
13135534 ATATATATACAAAATTGGACAGC
1 ATATATATACAAAATTGGACAGC
* * *
13135557 ATTTATACACCAAAATTTGACAGC
1 ATATATATA-CAAAATTGGACAGC
*
13135581 ATATATATACAAAATTGGAGAGC
1 ATATATATACAAAATTGGACAGC
* * *
13135604 ATTTATACT-CTAAAACTGGGCAGC
1 ATATATA-TAC-AAAATTGGACAGC
* * *
13135628 ATATATATACCAATTTGGACAAC
1 ATATATATACAAAATTGGACAGC
* *
13135651 ACT-TATACACAAAATTTGACAGC
1 A-TATATATACAAAATTGGACAGC
*
13135674 ATGTATATACAAAATTGGACAGC
1 ATATATATACAAAATTGGACAGC
* *
13135697 ACT-TATACACAAAATTTGACAGC
1 A-TATATATACAAAATTGGACAGC
*
13135720 ATGTATATACAAAATTGGACAGC
1 ATATATATACAAAATTGGACAGC
* * *
13135743 ATTTATACACTAAAATTGGGCAGC
1 ATATATATAC-AAAATTGGACAGC
* * *
13135767 GTATATATACCAATTTGGACAGC
1 ATATATATACAAAATTGGACAGC
* *
13135790 ACT-TATACACAAAATTTGACAGC
1 A-TATATATACAAAATTGGACAGC
* *
13135813 ATGTATATACAAAATTGGATAGC
1 ATATATATACAAAATTGGACAGC
* *
13135836 ATTTATACACTAAAATTCGG-CAGC
1 ATATATATAC-AAAATT-GGACAGC
* *
13135860 ATATATATACCAATTTGG-CAGC
1 ATATATATACAAAATTGGACAGC
13135882 ATATATATACAAAATTGGACAGC
1 ATATATATACAAAATTGGACAGC
* * *
13135905 ATTTATACACCAAAATTGGGCAGC
1 ATATATATA-CAAAATTGGACAGC
13135929 ATATAT
1 ATATAT
13135935 TCGATTTTTG
Statistics
Matches: 305, Mismatches: 58, Indels: 29
0.78 0.15 0.07
Matches are distributed among these distances:
22 25 0.08
23 183 0.60
24 95 0.31
25 2 0.01
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28
Consensus pattern (23 bp):
ATATATATACAAAATTGGACAGC
Found at i:13135685 original size:93 final size:93
Alignment explanation
Indices: 13135499--13135930 Score: 503
Period size: 93 Copynumber: 4.6 Consensus size: 93
13135489 TCTACCCTGT
*
13135499 TTGGACAGCTCTTATACATCAAAA-TTGAGCAGCATATATATATACAAAATTGGACAGCATTTAT
1 TTGGACAGCACTTATACA-CAAAATTTGA-CAGC--ATATATATACAAAATTGGACAGCATTTAT
*
13135563 ACACCAAAATTTGACAGCATATATATACAAAA
62 ACACTAAAATTTGACAGCATATATATACAAAA
* * * * * * * * * *
13135595 TTGGAGAGCATTTATACTCTAAAACTGGGCAGCATATATATACCAATTTGGACAACACTTATACA
1 TTGGACAGCACTTATACAC-AAAATTTGACAGCATATATATACAAAATTGGACAGCATTTATACA
*
13135660 C-AAAATTTGACAGCATGTATATACAAAA
65 CTAAAATTTGACAGCATATATATACAAAA
*
13135688 TTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATACAC
1 TTGGACAGCACTTATACACAAAATTTGACAGCATATATATACAAAATTGGACAGCATTTATACAC
* * * * *
13135753 TAAAATTGGGCAGCGTATATATACCAAT
66 TAAAATTTGACAGCATATATATACAAAA
* *
13135781 TTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGATAGCATTTATACAC
1 TTGGACAGCACTTATACACAAAATTTGACAGCATATATATACAAAATTGGACAGCATTTATACAC
* * * *
13135846 TAAAATTCGGCAGCATATATATACCAAT
66 TAAAATTTGACAGCATATATATACAAAA
* * * * *
13135874 TTGG-CAGCA-TATATATACAAAATTGGACAGCATTTATACACCAAAATTGGGCAGCAT
1 TTGGACAGCACT-TATACACAAAATTTGACAGCATATATATA-CAAAATTGGACAGCAT
13135931 ATATTCGATT
Statistics
Matches: 294, Mismatches: 37, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
91 1 0.00
92 68 0.23
93 171 0.58
94 29 0.10
95 1 0.00
96 22 0.07
97 2 0.01
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (93 bp):
TTGGACAGCACTTATACACAAAATTTGACAGCATATATATACAAAATTGGACAGCATTTATACAC
TAAAATTTGACAGCATATATATACAAAA
Found at i:13135756 original size:139 final size:139
Alignment explanation
Indices: 13135498--13135917 Score: 594
Period size: 139 Copynumber: 3.0 Consensus size: 139
13135488 ATCTACCCTG
* *
13135498 TTTGGACAGCTCTTATACATCAAAA-TTGAGCAGCATATATATATACAAAATTGGACAGCATTTA
1 TTTGGACAGCACTTATACA-CAAAATTTGA-CAGC--ATGTATATACAAAATTGGACAGCATTTA
* * *
13135562 TACACCAAAATTTGACAGCATATATATACAAAATTGGAGAGCATTTATACTCTAAAACTGGGCAG
62 TACA-CAAAATTTGACAGCATATATATACAAAATTGGACAGCATTTATACACTAAAATTGGGCAG
13135627 CATATATATACCAA
126 CATATATATACCAA
* *
13135641 TTTGGACAACACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACAGCACTTATACA
1 TTTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATACA
* *
13135706 CAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATACACTAAAATTGGGCAGCGTAT
66 CAAAATTTGACAGCATATATATACAAAATTGGACAGCATTTATACACTAAAATTGGGCAGCATAT
13135771 ATATACCAA
131 ATATACCAA
*
13135780 TTTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGATAGCATTTATACA
1 TTTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATACA
* * * * * * * *
13135845 CTAAAATTCGGCAGCATATATATACCAATTTGG-CAGCATATATATAC-AAAATTGGACAGCATT
66 C-AAAATTTGACAGCATATATATACAAAATTGGACAGCATTTATACACTAAAATTGGGCAGCATA
*
13135908 TATACACCAA
130 TATATACCAA
13135918 AATTGGGCAG
Statistics
Matches: 252, Mismatches: 23, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
138 22 0.09
139 144 0.57
140 56 0.22
142 9 0.04
143 21 0.08
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.28
Consensus pattern (139 bp):
TTTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATACA
CAAAATTTGACAGCATATATATACAAAATTGGACAGCATTTATACACTAAAATTGGGCAGCATAT
ATATACCAA
Found at i:13136894 original size:43 final size:43
Alignment explanation
Indices: 13136829--13136940 Score: 149
Period size: 43 Copynumber: 2.6 Consensus size: 43
13136819 CGTACAATGA
* *
13136829 CAACGTCCCAGACGTGGTCTTACATGTAATCACATA-TAGATGC
1 CAACGTCCCAGACGTGGTCTTACACGTAAACACA-AGTAGATGC
*
13136872 C-ACTGTCCCAGACAG-GGTCTTACACGTAAACACAAGTCGATGC
1 CAAC-GTCCCAGAC-GTGGTCTTACACGTAAACACAAGTAGATGC
13136915 CAACGTCCCAGACGTGGTCTTACACG
1 CAACGTCCCAGACGTGGTCTTACACG
13136941 ATAGTACATA
Statistics
Matches: 61, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
42 4 0.07
43 54 0.89
44 3 0.05
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (43 bp):
CAACGTCCCAGACGTGGTCTTACACGTAAACACAAGTAGATGC
Found at i:13143439 original size:23 final size:23
Alignment explanation
Indices: 13143369--13143815 Score: 418
Period size: 23 Copynumber: 19.3 Consensus size: 23
13143359 TATGCAGCAT
*
13143369 ATATATATACAAAATTAGACAGC
1 ATATATATACAAAATTGGACAGC
* ** *
13143392 ATTTATCCACCAAAATTTGACAGC
1 ATATATATA-CAAAATTGGACAGC
*
13143416 ATATATATACAAAATTGGAGAGC
1 ATATATATACAAAATTGGACAGC
* ** *
13143439 ATTTATACCCTAAAATTGGGCAGC
1 ATATATATAC-AAAATTGGACAGC
* *
13143463 ATATATATACCAATTTGGACAGC
1 ATATATATACAAAATTGGACAGC
* *
13143486 ACT-TATACACAAAATTTGACAGC
1 A-TATATATACAAAATTGGACAGC
* *
13143509 ATGTATATACAAAATTGAACAGC
1 ATATATATACAAAATTGGACAGC
* *
13143532 ACT-TATACACAAAATTTGACAGC
1 A-TATATATACAAAATTGGACAGC
*
13143555 ATGTATATACAAAATTGGACAGC
1 ATATATATACAAAATTGGACAGC
* * *
13143578 ATTTATACACTAAAATTGGGCAGC
1 ATATATATAC-AAAATTGGACAGC
* * *
13143602 GTATATATACCAATTTGGACAGC
1 ATATATATACAAAATTGGACAGC
* *
13143625 ACT-TATACACAAAATTTGACAGC
1 A-TATATATACAAAATTGGACAGC
*
13143648 ATGTATATACAAAATTGGACAGC
1 ATATATATACAAAATTGGACAGC
* * *
13143671 ATTTATACACAAAATTTGACAGC
1 ATATATATACAAAATTGGACAGC
* *
13143694 ATGTATATACAAAATTGGATAGC
1 ATATATATACAAAATTGGACAGC
* *
13143717 ATTTATACACTAAAATTCGG-CAGC
1 ATATATATAC-AAAATT-GGACAGC
* *
13143741 ATATATATACCAATTTGG-CAGC
1 ATATATATACAAAATTGGACAGC
13143763 ATATATATACAAAATTGGACAGC
1 ATATATATACAAAATTGGACAGC
* * *
13143786 ATTTATACACCAAAATTGGGCAGC
1 ATATATATA-CAAAATTGGACAGC
13143810 ATATAT
1 ATATAT
13143816 TCGATTTTTG
Statistics
Matches: 343, Mismatches: 68, Indels: 25
0.79 0.16 0.06
Matches are distributed among these distances:
22 25 0.07
23 222 0.65
24 94 0.27
25 2 0.01
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28
Consensus pattern (23 bp):
ATATATATACAAAATTGGACAGC
Found at i:13143517 original size:46 final size:46
Alignment explanation
Indices: 13143334--13143811 Score: 557
Period size: 46 Copynumber: 10.2 Consensus size: 46
13143324 TCTACCCTGT
13143334 TTGGACAGC-TCTTATACATCAAAATTATG-CAGCATATATATATACAAAA
1 TTGGACAGCAT-TTATACA-CAAAATT-TGACAGC--ATATATATACAAAA
* *
13143383 TTAGACAGCATTTATCCACCAAAATTTGACAGCATATATATACAAAA
1 TTGGACAGCATTTATACA-CAAAATTTGACAGCATATATATACAAAA
* * * * * *
13143430 TTGGAGAGCATTTATACCCTAAAATTGGGCAGCATATATATACCAAT
1 TTGGACAGCATTTATACAC-AAAATTTGACAGCATATATATACAAAA
* *
13143477 TTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAA
1 TTGGACAGCATTTATACACAAAATTTGACAGCATATATATACAAAA
* * *
13143523 TTGAACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAA
1 TTGGACAGCATTTATACACAAAATTTGACAGCATATATATACAAAA
* * * * *
13143569 TTGGACAGCATTTATACACTAAAATTGGGCAGCGTATATATACCAAT
1 TTGGACAGCATTTATACAC-AAAATTTGACAGCATATATATACAAAA
* *
13143616 TTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAA
1 TTGGACAGCATTTATACACAAAATTTGACAGCATATATATACAAAA
*
13143662 TTGGACAGCATTTATACACAAAATTTGACAGCATGTATATACAAAA
1 TTGGACAGCATTTATACACAAAATTTGACAGCATATATATACAAAA
* * * * *
13143708 TTGGATAGCATTTATACACTAAAATTCGGCAGCATATATATACCAAT
1 TTGGACAGCATTTATACAC-AAAATTTGACAGCATATATATACAAAA
* * * * *
13143755 TTGG-CAGCATATATATACAAAATTGGACAGCATTTATACACCAAAA
1 TTGGACAGCATTTATACACAAAATTTGACAGCATATATATA-CAAAA
*
13143801 TTGGGCAGCAT
1 TTGGACAGCAT
13143812 ATATTCGATT
Statistics
Matches: 371, Mismatches: 51, Indels: 16
0.85 0.12 0.04
Matches are distributed among these distances:
45 18 0.05
46 187 0.50
47 138 0.37
48 2 0.01
49 25 0.07
50 1 0.00
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.28
Consensus pattern (46 bp):
TTGGACAGCATTTATACACAAAATTTGACAGCATATATATACAAAA
Found at i:13143804 original size:139 final size:139
Alignment explanation
Indices: 13143333--13143811 Score: 721
Period size: 139 Copynumber: 3.4 Consensus size: 139
13143323 ATCTACCCTG
* * *
13143333 TTTGGACAGCTCTTATACATCAAAATTATG-CAGCATATATATATACAAAATTAGACAGCATTTA
1 TTTGGACAGCACTTATACA-CAAAATT-TGACAGC--ATGTATATACAAAATTGGACAGCATTTA
* * * *
13143397 TCCACCAAAATTTGACAGCATATATATACAAAATTGGAGAGCATTTATACCCTAAAATTGGGCAG
62 TACA-CAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATACACTAAAATTGGGCAG
13143462 CATATATATACCAA
126 CATATATATACCAA
* *
13143476 TTTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGAACAGCACTTATACA
1 TTTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATACA
*
13143541 CAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATACACTAAAATTGGGCAGCGTAT
66 CAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATACACTAAAATTGGGCAGCATAT
13143606 ATATACCAA
131 ATATACCAA
13143615 TTTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATACA
1 TTTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATACA
* *
13143680 CAAAATTTGACAGCATGTATATACAAAATTGGATAGCATTTATACACTAAAATTCGGCAGCATAT
66 CAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATACACTAAAATTGGGCAGCATAT
13143745 ATATACCAA
131 ATATACCAA
* * * * *
13143754 TTTGG-CAGCA-TATATATACAAAATTGGACAGCATTTATACACCAAAATTGGGCAGCAT
1 TTTGGACAGCACT-TATACACAAAATTTGACAGCATGTATATA-CAAAATTGGACAGCAT
13143812 ATATTCGATT
Statistics
Matches: 313, Mismatches: 20, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
137 1 0.00
138 30 0.10
139 224 0.72
140 27 0.09
141 2 0.01
142 11 0.04
143 18 0.06
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.28
Consensus pattern (139 bp):
TTTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATACA
CAAAATTTGACAGCATGTATATACAAAATTGGACAGCATTTATACACTAAAATTGGGCAGCATAT
ATATACCAA
Found at i:13144776 original size:43 final size:43
Alignment explanation
Indices: 13144711--13144822 Score: 149
Period size: 43 Copynumber: 2.6 Consensus size: 43
13144701 CGTACAATGA
*
13144711 CAACGTCCCAGACGTGGTCTTACATGTAATCACATA-TAGATGC
1 CAACGTCCCAGACGTGGTCTTACATGTAAACACA-AGTAGATGC
* *
13144754 C-ACTGTCCCAGACAG-GGTCTTACACGTAAACACAAGTCGATGC
1 CAAC-GTCCCAGAC-GTGGTCTTACATGTAAACACAAGTAGATGC
13144797 CAACGTCCCAGACGTGGTCTTACATG
1 CAACGTCCCAGACGTGGTCTTACATG
13144823 ATAGTACATA
Statistics
Matches: 60, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
42 4 0.07
43 53 0.88
44 3 0.05
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (43 bp):
CAACGTCCCAGACGTGGTCTTACATGTAAACACAAGTAGATGC
Found at i:13146546 original size:50 final size:50
Alignment explanation
Indices: 13146380--13146572 Score: 190
Period size: 50 Copynumber: 3.7 Consensus size: 50
13146370 GGGAATGAGA
*
13146380 TCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCATTGAGGTTATGAGAGG
1 TCCCATGTAAGACCATATCTGGGACATGGCATTGGCATC---GA---TATGAGAAG
* ** * * *
13146436 TCCCATGTAAGACAATGCCTGGGACATGGCGTTGGCACCGAGATGA-AAGG
1 TCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGAGAA-G
** * * * *
13146486 TCCCCCGTAAGACCATGTTTGGGACATGGCATGGGCATCGATATGAGAAC
1 TCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGAGAAG
*
13146536 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 TCCCATGTAAGACCATATCTGGGACATGGCATTGGCA
13146573 GTAAAGAAAA
Statistics
Matches: 112, Mismatches: 23, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
49 1 0.01
50 73 0.65
51 2 0.02
53 2 0.02
56 34 0.30
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATATCTGGGACATGGCATTGGCATCGATATGAGAAG
Found at i:13146565 original size:100 final size:102
Alignment explanation
Indices: 13146386--13146572 Score: 234
Period size: 100 Copynumber: 1.8 Consensus size: 102
13146376 GAGATCCCAT
* **
13146386 GTAAGACCATATCTGGGACATGGCATTGGCATCATTGAGGTTATGAGAGGTCCCATGTAAGACAA
1 GTAAGACCATATCTGGGACATGGCATGGGCATC--TGA-G-TATGAGAACTCCCATGTAAGACAA
* *
13146451 TGCCTGGGACATGGCGTTGGCACCGAGATGAAAGGTCCCCC
62 TACCTGGGACATGGCATTGGCACCGAGATGAAAGGTCCCCC
* * * *
13146492 GTAAGACCATGTTTGGGACATGGCATGGGCATC-GA-TATGAGAACTCCCATGTAAGACCATATC
1 GTAAGACCATATCTGGGACATGGCATGGGCATCTGAGTATGAGAACTCCCATGTAAGACAATACC
*
13146555 TGGGATATGGCATTGGCA
66 TGGGACATGGCATTGGCA
13146573 GTAAAGAAAA
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
100 39 0.55
103 2 0.03
106 30 0.42
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (102 bp):
GTAAGACCATATCTGGGACATGGCATGGGCATCTGAGTATGAGAACTCCCATGTAAGACAATACC
TGGGACATGGCATTGGCACCGAGATGAAAGGTCCCCC
Found at i:13148678 original size:17 final size:17
Alignment explanation
Indices: 13148658--13148690 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
13148648 ACAAATTTCT
13148658 AAAAAGTTC-ATAATTAA
1 AAAAAG-TCAATAATTAA
13148675 AAAAAGTCAATAATTA
1 AAAAAGTCAATAATTA
13148691 TACTGTCATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.27
Consensus pattern (17 bp):
AAAAAGTCAATAATTAA
Found at i:13152116 original size:13 final size:11
Alignment explanation
Indices: 13152080--13152110 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
13152070 CTGCCCGTAT
13152080 TAATTTTTATA
1 TAATTTTTATA
*
13152091 TTATTTTTATA
1 TAATTTTTATA
13152102 TAATTTTTA
1 TAATTTTTA
13152111 AATATATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TAATTTTTATA
Found at i:13152264 original size:30 final size:30
Alignment explanation
Indices: 13152230--13152292 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
13152220 ACTTAACAAG
13152230 CAAATACCTCTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
* *
13152260 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
13152290 CAA
1 CAA
13152293 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.59, C:0.16, G:0.02, T:0.24
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:13153323 original size:66 final size:65
Alignment explanation
Indices: 13153206--13153346 Score: 178
Period size: 66 Copynumber: 2.2 Consensus size: 65
13153196 TGAGCAAATT
* * * *
13153206 GCTA-AACTTAAAGCGGAGGTAGCATCGAGAGAAGTAGAGGCTCAAGGAAAATATGAAGAACTCC
1 GCTACAACTTAAAGCGGAGGCAGCAGCGAGAGAAGCAGAGGC-CAAGAAAAATATGAAGAACTCC
13153270 A
65 A
* *
13153271 GCTACAACTTAAAGCGGAGGCAGCAGCGAGGGAAGCAGAGG-CAAGCAAAAAATATGATGAACTC
1 GCTACAACTTAAAGCGGAGGCAGCAGCGAGAGAAGCAGAGGCCAAG--AAAAATATGAAGAACTC
13153335 CA
64 CA
*
13153337 ACTACAACTT
1 GCTACAACTT
13153347 CAAAATATGA
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
64 4 0.06
65 4 0.06
66 58 0.88
ACGTcount: A:0.41, C:0.18, G:0.26, T:0.14
Consensus pattern (65 bp):
GCTACAACTTAAAGCGGAGGCAGCAGCGAGAGAAGCAGAGGCCAAGAAAAATATGAAGAACTCCA
Found at i:13153813 original size:43 final size:43
Alignment explanation
Indices: 13153688--13153829 Score: 142
Period size: 43 Copynumber: 3.3 Consensus size: 43
13153678 GAACATGACA
* * **
13153688 TTTAGCGGCGTTTTTAGGGAAAGCACCACTAATTGTCATGTTC
1 TTTAGCGGCGTTTGTAGGGAAAGCGCCACTAAAAGTCATGTTC
** * * *
13153731 TTTAAAGGCGTTTGTGGGGAAAGCGCCATTAAAAATCATGTTC
1 TTTAGCGGCGTTTGTAGGGAAAGCGCCACTAAAAGTCATGTTC
* * *
13153774 TTTAGCGGCGTTTGT-GGGATAAGCGCCGCTAAAGGTCATGCTC
1 TTTAGCGGCGTTTGTAGGGA-AAGCGCCACTAAAAGTCATGTTC
* *
13153817 TATAGCAGCGTTT
1 TTTAGCGGCGTTT
13153830 TTCCACATAA
Statistics
Matches: 80, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
42 4 0.05
43 76 0.95
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.32
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTAGGGAAAGCGCCACTAAAAGTCATGTTC
Found at i:13160185 original size:20 final size:20
Alignment explanation
Indices: 13160162--13160199 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
13160152 TGTTATTGGA
* *
13160162 TTATGAAATGTGATATTAAG
1 TTATGAAAAGTAATATTAAG
13160182 TTATGAAAAGTAATATTA
1 TTATGAAAAGTAATATTA
13160200 TGGACTTGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.16, T:0.39
Consensus pattern (20 bp):
TTATGAAAAGTAATATTAAG
Found at i:13160364 original size:75 final size:75
Alignment explanation
Indices: 13160238--13160515 Score: 269
Period size: 75 Copynumber: 3.7 Consensus size: 75
13160228 TCGATTCATT
*
13160238 CGACTAGC-ACTGGGTGCAACTTCTGTCAGTTTATC-TGACTAGTGCTAGGCACATTATTATAAT
1 CGACTAGCGA-TGGGTGCAACTTCTGTCAGTTTATCTTGACTAGTGCTGGGCACATTATTATAAT
* *
13160301 TGTTGTTATATC
65 CGTAG-TATATC
* * * *
13160313 CGACTGGCGATGGGCGCATCTTCTGCCAGTTTATCTTG-CTAGTGCTGGGCACATTATTATAATC
1 CGACTAGCGATGGGTGCAACTTCTGTCAGTTTATCTTGACTAGTGCTGGGCACATTATTATAATC
*
13160377 ATCAGTATATC
66 GT-AGTATATC
* * * * * *
13160388 CGACTAGTGCTGGGTGCAACTTCTATCAGTTTAT-TTGACTAATGTTGGGCACATAATTATAATC
1 CGACTAGCGATGGGTGCAACTTCTGTCAGTTTATCTTGACTAGTGCTGGGCACATTATTATAATC
*
13160452 GTCGGTATATC
66 GT-AGTATATC
* * ** * * * * *
13160463 CGACTAGTGCTGGGCCCCACCTCTGTTAGTTTGTC-TGACTAGTGCTCGGCACA
1 CGACTAGCGATGGGTGCAACTTCTGTCAGTTTATCTTGACTAGTGCTGGGCACA
13160516 CTCTCTATAT
Statistics
Matches: 168, Mismatches: 30, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
74 3 0.02
75 161 0.96
76 4 0.02
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.34
Consensus pattern (75 bp):
CGACTAGCGATGGGTGCAACTTCTGTCAGTTTATCTTGACTAGTGCTGGGCACATTATTATAATC
GTAGTATATC
Found at i:13160514 original size:150 final size:150
Alignment explanation
Indices: 13160238--13160515 Score: 344
Period size: 150 Copynumber: 1.9 Consensus size: 150
13160228 TCGATTCATT
* * * *
13160238 CGACTAGCACTGGGTGCAACTTCTGTCAGTTTATCTGACTAGTGCTAGGCACATTATTATAATTG
1 CGACTAGCACTGGGTGCAACTTCTATCAGTTTATCTGACTAATGCTAGGCACATAATTATAATCG
* * * * * *
13160303 TTGTTATATCCGACTGGCGATGGGCGCATCTTCTGCCAGTTTATCTTGCTAGTGCTGGGCACATT
66 TCGGTATATCCGACTAGCGATGGGCCCATCCTCTGCCAGTTTATCTTGCTAGTGCTCGGCACATT
13160368 ATTATAATCATCAGTATATC
131 ATTATAATCATCAGTATATC
** * * *
13160388 CGACTAGTGCTGGGTGCAACTTCTATCAGTTTATTTGACTAATGTTGGGCACATAATTATAATCG
1 CGACTAGCACTGGGTGCAACTTCTATCAGTTTATCTGACTAATGCTAGGCACATAATTATAATCG
* * ** *
13160453 TCGGTATATCCGACTAGTGCTGGGCCCCA-CCTCTGTTAGTTTGTC-TGACTAGTGCTCGGCACA
66 TCGGTATATCCGACTAGCGATGGG-CCCATCCTCTGCCAGTTTATCTTG-CTAGTGCTCGGCACA
13160516 CTCTCTATAT
Statistics
Matches: 106, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
149 2 0.02
150 101 0.95
151 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.34
Consensus pattern (150 bp):
CGACTAGCACTGGGTGCAACTTCTATCAGTTTATCTGACTAATGCTAGGCACATAATTATAATCG
TCGGTATATCCGACTAGCGATGGGCCCATCCTCTGCCAGTTTATCTTGCTAGTGCTCGGCACATT
ATTATAATCATCAGTATATC
Found at i:13163281 original size:20 final size:20
Alignment explanation
Indices: 13163256--13163294 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
13163246 CTAACCATCA
13163256 ACCACGCATG-CCTCCGTACC
1 ACCACG-ATGACCTCCGTACC
*
13163276 ACCACGTTGACCTCCGTAC
1 ACCACGATGACCTCCGTAC
13163295 GGCCTCCGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.21, C:0.46, G:0.15, T:0.18
Consensus pattern (20 bp):
ACCACGATGACCTCCGTACC
Found at i:13164314 original size:17 final size:16
Alignment explanation
Indices: 13164284--13164327 Score: 61
Period size: 17 Copynumber: 2.7 Consensus size: 16
13164274 TTTGTTATCT
* *
13164284 TTTTACTTTATTTATA
1 TTTTATTTTTTTTATA
13164300 TTTTATGTTTTTTTATA
1 TTTTAT-TTTTTTTATA
13164317 TTTTATTTTTT
1 TTTTATTTTTT
13164328 GGATAAAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 10 0.40
17 15 0.60
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.77
Consensus pattern (16 bp):
TTTTATTTTTTTTATA
Found at i:13165905 original size:53 final size:54
Alignment explanation
Indices: 13165839--13165952 Score: 194
Period size: 53 Copynumber: 2.1 Consensus size: 54
13165829 GGTGTCATTA
* *
13165839 GGTATGTTGATTCTGATTTTCCTGGAGACCTTAATAAAATAAGATCTTTCACAT
1 GGTATGTTGATTCTGATTTTCCTGAAGACCTTAATAAAAGAAGATCTTTCACAT
*
13165893 GG-ATGTTGATTCTGATTTTGCTGAAGACCTTAATAAAAGAAGATCTTTCACAT
1 GGTATGTTGATTCTGATTTTCCTGAAGACCTTAATAAAAGAAGATCTTTCACAT
13165946 GGTATGT
1 GGTATGT
13165953 CTTTACTATT
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
53 50 0.89
54 6 0.11
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.38
Consensus pattern (54 bp):
GGTATGTTGATTCTGATTTTCCTGAAGACCTTAATAAAAGAAGATCTTTCACAT
Found at i:13166422 original size:29 final size:29
Alignment explanation
Indices: 13166380--13166436 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
13166370 GTGGAAGAGA
* *
13166380 TGAAGAATTTGTTCATTGAGAGTTCGTGG
1 TGAAGAACTTGTTCATTGAGAATTCGTGG
*
13166409 TGAAGAACTTGTTCGTTGAGAATTCGTG
1 TGAAGAACTTGTTCATTGAGAATTCGTG
13166437 TCAAGGTGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.25, C:0.09, G:0.30, T:0.37
Consensus pattern (29 bp):
TGAAGAACTTGTTCATTGAGAATTCGTGG
Found at i:13167676 original size:16 final size:16
Alignment explanation
Indices: 13167655--13167712 Score: 62
Period size: 16 Copynumber: 3.5 Consensus size: 16
13167645 CCCTTCAAGA
13167655 ATTTTATTAATAAATG
1 ATTTTATTAATAAATG
* ***
13167671 ATTTTATTTTATTTTTTG
1 ATTTTA--TTAATAAATG
13167689 ATTTTATTAATAAATG
1 ATTTTATTAATAAATG
13167705 ATTTTATT
1 ATTTTATT
13167713 TGTATGACAT
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
16 20 0.62
18 12 0.38
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (16 bp):
ATTTTATTAATAAATG
Found at i:13168082 original size:24 final size:23
Alignment explanation
Indices: 13168047--13168093 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
13168037 AAGATCGTTA
* * *
13168047 AAAAAATTTTATATATTTTATTT
1 AAAAAATATTATAAATTTAATTT
13168070 AAAAAATCATTATAAATTTAATTT
1 AAAAAAT-ATTATAAATTTAATTT
13168094 TAATAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (23 bp):
AAAAAATATTATAAATTTAATTT
Found at i:13177266 original size:14 final size:14
Alignment explanation
Indices: 13177247--13177278 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
13177237 ATAGTTTGCA
13177247 TATAAAGCAAACGG
1 TATAAAGCAAACGG
*
13177261 TATAAAGCAAATGG
1 TATAAAGCAAACGG
13177275 TATA
1 TATA
13177279 GGCAAACATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.50, C:0.09, G:0.19, T:0.22
Consensus pattern (14 bp):
TATAAAGCAAACGG
Found at i:13190161 original size:28 final size:28
Alignment explanation
Indices: 13190114--13190240 Score: 164
Period size: 28 Copynumber: 4.5 Consensus size: 28
13190104 TTGACTTTCG
*
13190114 ACACTAAGTGTGCGAATTTAATTGTAAA
1 ACACTAAGTGTGCGAGTTTAATTGTAAA
*
13190142 ACACTAAGTGTACGAGTTTAATTGTAAA
1 ACACTAAGTGTGCGAGTTTAATTGTAAA
* * *
13190170 TCACTAAGTGTGCGAGTTTAATGGCAAA
1 ACACTAAGTGTGCGAGTTTAATTGTAAA
* * * **
13190198 GCACTAAGTGTGCGAGTTTGATTATTGA
1 ACACTAAGTGTGCGAGTTTAATTGTAAA
13190226 ACACTAAGTGTGCGA
1 ACACTAAGTGTGCGA
13190241 ACTTATGAAA
Statistics
Matches: 85, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 85 1.00
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.31
Consensus pattern (28 bp):
ACACTAAGTGTGCGAGTTTAATTGTAAA
Found at i:13190962 original size:23 final size:23
Alignment explanation
Indices: 13190936--13191608 Score: 557
Period size: 23 Copynumber: 29.0 Consensus size: 23
13190926 TCTAAAATTG
* *
13190936 GTATATATATGCTGCCCAATTTT
1 GTATATACATGCTGTCCAATTTT
*
13190959 GTATATACATGCTGTCAAATTTT
1 GTATATACATGCTGTCCAATTTT
*
13190982 GTATATACATGCTGTCAAATTTT
1 GTATATACATGCTGTCCAATTTT
* * *
13191005 GTGTATA-AGTGCTGTACAA-ATT
1 GTATATACA-TGCTGTCCAATTTT
* * *
13191027 GCTACATATATGCTGCCCAATTTT
1 G-TATATACATGCTGTCCAATTTT
*
13191051 GGTGA-ATAAATGCTGTCCAATTTT
1 -GT-ATATACATGCTGTCCAATTTT
*
13191075 GTATATACATGTTGTCCAATTTGT
1 GTATATACATGCTGTCCAATTT-T
* * *
13191099 GTATA-A-GTGCTGTCCAAATTG
1 GTATATACATGCTGTCCAATTTT
* *
13191120 GTATATATATGCTGCCCAATTTT
1 GTATATACATGCTGTCCAATTTT
*
13191143 GGTGA-ATAAATGCTGTCCAATTTT
1 -GT-ATATACATGCTGTCCAATTTT
* *
13191167 GTATATACATGATGTCAAATTTT
1 GTATATACATGCTGTCCAATTTT
* * *
13191190 GTGTATA-AGTGCTGTCCAAATTG
1 GTATATACA-TGCTGTCCAATTTT
*
13191213 GTATATATATGCTGTCCAATTTT
1 GTATATACATGCTGTCCAATTTT
*
13191236 GGTGA-ATAAATGCTGTCCAATTTT
1 -GT-ATATACATGCTGTCCAATTTT
* *
13191260 ATATATACATGCTGTCAAATTTT
1 GTATATACATGCTGTCCAATTTT
* * *
13191283 GTGTATA-AGTGCTGTCCAAATTG
1 GTATATACA-TGCTGTCCAATTTT
* *
13191306 GTATATATATGCTGCCCAATTTT
1 GTATATACATGCTGTCCAATTTT
*
13191329 GGTGA-ATAAATGCTGTCCAATTTT
1 -GT-ATATACATGCTGTCCAATTTT
* *
13191353 GTATATACATGATGTCAAATTTT
1 GTATATACATGCTGTCCAATTTT
* * *
13191376 GTGTATA-AGTGCTGTCCAAATTG
1 GTATATACA-TGCTGTCCAATTTT
*
13191399 GTATATATATGCTGTCCAATTTT
1 GTATATACATGCTGTCCAATTTT
* *
13191422 GGTGA-ATAAATGCTATCCAATTTT
1 -GT-ATATACATGCTGTCCAATTTT
*
13191446 GTATATACATGCTGTCAAATTTT
1 GTATATACATGCTGTCCAATTTT
* * *
13191469 GTGTATA-AGTGCTGTCCAAATTG
1 GTATATACA-TGCTGTCCAATTTT
* *
13191492 GTATATATATGCTGCCCAATTTT
1 GTATATACATGCTGTCCAATTTT
* * *
13191515 GGTGAATAAAAATCCTGTCCAATTTT
1 -GT--ATATACATGCTGTCCAATTTT
*
13191541 GTATATACATGCTGTCAAATTTT
1 GTATATACATGCTGTCCAATTTT
* * *
13191564 GTGTATA-AGTGCTGTCCAAATTG
1 GTATATACA-TGCTGTCCAATTTT
13191587 GTATATACATGCTG-CTCAATTT
1 GTATATACATGCTGTC-CAATTT
13191609 CTGATGTATA
Statistics
Matches: 524, Mismatches: 90, Indels: 72
0.76 0.13 0.10
Matches are distributed among these distances:
21 5 0.01
22 27 0.05
23 356 0.68
24 111 0.21
25 8 0.02
26 17 0.03
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (23 bp):
GTATATACATGCTGTCCAATTTT
Found at i:13191096 original size:93 final size:93
Alignment explanation
Indices: 13190930--13191608 Score: 1166
Period size: 93 Copynumber: 7.3 Consensus size: 93
13190920 TAATGGTCTA
* *
13190930 AAATTGGTATATATATGCTGCCCAATTTT-GT-ATATACATGCTGTCAAATTTTGTATATACATG
1 AAATTGGTATATATATGCTGCCCAATTTTGGTGA-ATAAATGCTGTCCAATTTTGTATATACATG
*
13190993 CTGTCAAATTTTGTGTATAAGTGCTGTAC
65 CTGTCAAATTTTGTGTATAAGTGCTGTCC
* * *
13191022 AAATTGCTACATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGT
1 AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGC
*
13191087 TGTCCAA-TTTGTGTATAAGTGCTGTCC
66 TGTCAAATTTTGTGTATAAGTGCTGTCC
*
13191114 AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGA
1 AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGC
13191179 TGTCAAATTTTGTGTATAAGTGCTGTCC
66 TGTCAAATTTTGTGTATAAGTGCTGTCC
* *
13191207 AAATTGGTATATATATGCTGTCCAATTTTGGTGAATAAATGCTGTCCAATTTTATATATACATGC
1 AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGC
13191272 TGTCAAATTTTGTGTATAAGTGCTGTCC
66 TGTCAAATTTTGTGTATAAGTGCTGTCC
*
13191300 AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGA
1 AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGC
13191365 TGTCAAATTTTGTGTATAAGTGCTGTCC
66 TGTCAAATTTTGTGTATAAGTGCTGTCC
* *
13191393 AAATTGGTATATATATGCTGTCCAATTTTGGTGAATAAATGCTATCCAATTTTGTATATACATGC
1 AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGC
13191458 TGTCAAATTTTGTGTATAAGTGCTGTCC
66 TGTCAAATTTTGTGTATAAGTGCTGTCC
*
13191486 AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAAAATCCTGTCCAATTTTGTATATACAT
1 AAATTGGTATATATATGCTGCCCAATTTTGGTGAAT--AAATGCTGTCCAATTTTGTATATACAT
13191551 GCTGTCAAATTTTGTGTATAAGTGCTGTCC
64 GCTGTCAAATTTTGTGTATAAGTGCTGTCC
* *
13191581 AAATTGGTATATACATGCTGCTCAATTT
1 AAATTGGTATATATATGCTGCCCAATTT
13191609 CTGATGTATA
Statistics
Matches: 557, Mismatches: 25, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
92 114 0.20
93 361 0.65
94 1 0.00
95 81 0.15
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (93 bp):
AAATTGGTATATATATGCTGCCCAATTTTGGTGAATAAATGCTGTCCAATTTTGTATATACATGC
TGTCAAATTTTGTGTATAAGTGCTGTCC
Found at i:13196777 original size:16 final size:15
Alignment explanation
Indices: 13196745--13196778 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
13196735 TACCAAGTAA
13196745 TATATTAATATACTT
1 TATATTAATATACTT
*
13196760 TATATTATATATATTT
1 TATATTA-ATATACTT
13196776 TAT
1 TAT
13196779 CACTACTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (15 bp):
TATATTAATATACTT
Found at i:13201465 original size:9 final size:9
Alignment explanation
Indices: 13201448--13201484 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
13201438 TGAGTTTTTG
13201448 AATTCGAAT
1 AATTCGAAT
*
13201457 AACTCGAAT
1 AATTCGAAT
*
13201466 AATTTGAAT
1 AATTCGAAT
13201475 AATTCGAAT
1 AATTCGAAT
13201484 A
1 A
13201485 TCAAAATATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:13202981 original size:24 final size:24
Alignment explanation
Indices: 13202954--13203000 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
13202944 CTTTTTTAAA
*
13202954 AAAAATAAAATAATAATGCATAAC
1 AAAAATAAAATAATAATACATAAC
* * *
13202978 AAAATTGAAATGATAATACATAA
1 AAAAATAAAATAATAATACATAA
13203001 TGAATTTGAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.64, C:0.06, G:0.06, T:0.23
Consensus pattern (24 bp):
AAAAATAAAATAATAATACATAAC
Found at i:13205031 original size:44 final size:42
Alignment explanation
Indices: 13204721--13205234 Score: 189
Period size: 44 Copynumber: 11.8 Consensus size: 42
13204711 ACTTGATGCG
** * * * *
13204721 ATCTGCTATACTGCAACTTGAGAGAGATAAGATCTATTACTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-T-TCACTTCA
*** * *
13204765 A-CTCGCTCCACTATTACTTTAGGGAGATAGGATTATCGACTTCA
1 ATCT-GCTCCACTGCAACTTCAGGGAGATAAGATT-TC-ACTTCA
* * *
13204809 ATCTACTCCACTGCAAGC-TCAGGGAGATAAGATTTGCTTCTTCG
1 ATCTGCTCCACTGCAA-CTTCAGGGAGATAAGATTT-C-ACTTCA
* * * ** * **
13204853 GTCTGCCCCATTGTGACTTCAGGGGGATAAGACTTGT-TTTCTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TT-TCACT-TCA
* * ** * * *
13204897 GTCTACTCCACTGCAACTTCAGGGAGATAAGACCTGA-TGCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTCACTTCA
** ** * * *
13204938 ATCCACTGTACTGCAACTTCAGAGAGATAACATCTATTACTAT-A
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-T-TCACT-TCA
* * *
13204982 TTCTGCTCCGCTGCAACTTCAGGGAGATAGGATTATCGACTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-TC-ACTTCA
* *
13205026 ATCTGCTCCACTGCAACCTT-AGGGGGATAAGATTTGCCATCTTCG
1 ATCTGCTCCACTGCAA-CTTCAGGGAGATAAGATTT--CA-CTTCA
* * *
13205071 ATCTGCCCCACTGCCACTTCAGGGGGATAAGACTTGCTCAC-TCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TT--TCACTTCA
* * ** * * *
13205115 GTCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGA-TGCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTCACTTCA
** ** * * * *
13205156 ATCCACTGTACTGCAACTTTAGAGAGATAAGATCTATTACTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-T-TCACTTCA
* * *
13205200 ATCCGCTCCACTACAACTTCAGGGAGATAGGATTT
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT
13205235 GTGGCTTAAA
Statistics
Matches: 343, Mismatches: 99, Indels: 58
0.69 0.20 0.12
Matches are distributed among these distances:
41 54 0.16
42 3 0.01
43 19 0.06
44 221 0.64
45 40 0.12
46 5 0.01
48 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.29
Consensus pattern (42 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTCACTTCA
Found at i:13205082 original size:45 final size:44
Alignment explanation
Indices: 13205020--13205147 Score: 145
Period size: 45 Copynumber: 2.9 Consensus size: 44
13205010 AGGATTATCG
*
13205020 ACTTCAATCTGCTCCACTGCAACCTTAGGGGGATAAGATTTGC-C
1 ACTTC-ATCTGCTCCACTGCAACCTTAGGGGGATAAGACTTGCTC
* *
13205064 ATCTTCGATCTGCCCCACTGCCA-CTTCAGGGGGATAAGACTTGCTC
1 A-CTTC-ATCTGCTCCACTGCAACCTT-AGGGGGATAAGACTTGCTC
* *
13205110 AC-TCAGTCTGCTCCACTGCAACCTCAGGGAGATAAGAC
1 ACTTCA-TCTGCTCCACTGCAACCTTAGGGGGATAAGAC
13205148 CTGATGCGAT
Statistics
Matches: 71, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
43 1 0.01
44 31 0.44
45 37 0.52
46 2 0.03
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.24
Consensus pattern (44 bp):
ACTTCATCTGCTCCACTGCAACCTTAGGGGGATAAGACTTGCTC
Found at i:13205250 original size:218 final size:217
Alignment explanation
Indices: 13204708--13205233 Score: 766
Period size: 218 Copynumber: 2.4 Consensus size: 217
13204698 TCTAGTCGGC
* ** * *
13204708 AAGACTTGATGCGATCTGCTATACTGCAACTTGAGAGAGATAAGATCTATTACTTTAA-CTCGCT
1 AAGACCTGATGCGATCCACTGTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATC-CGCT
** * * *
13204772 CCACTATTACTTTAGGGAGATAGGATTATCGACTTCAATCTACTCCACTGCAAGCTCAGGGAGAT
65 CCACTACAACTTCAGGGAGATAGGATTATCGACTTCAATCTGCTCCACTGCAACCTCAGGGAGAT
* * * ** * **
13204837 AAGATTTGCTTCTTCGGTCTGCCCCATTGTGACTTCAGGGGGATAAGACTTGTTTTCTCAGTCTA
130 AAGATTTGCATCTTCGATCTGCCCCACTGCCACTTCAGGGGGATAAGACTTGCTCACTCAGTCTA
*
13204902 CTCCACTGCAACTTCAGGGAGAT
195 CTCCACTGCAACCTCAGGGAGAT
* * * *
13204925 AAGACCTGATGCGATCCACTGTACTGCAACTTCAGAGAGATAACATCTATTACTATATTCTGCTC
1 AAGACCTGATGCGATCCACTGTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTC
* * * *
13204990 CGCTGCAACTTCAGGGAGATAGGATTATCGACTTCAATCTGCTCCACTGCAACCTTAGGGGGATA
66 CACTACAACTTCAGGGAGATAGGATTATCGACTTCAATCTGCTCCACTGCAACCTCAGGGAGATA
*
13205055 AGATTTGCCATCTTCGATCTGCCCCACTGCCACTTCAGGGGGATAAGACTTGCTCACTCAGTCTG
131 AGATTTG-CATCTTCGATCTGCCCCACTGCCACTTCAGGGGGATAAGACTTGCTCACTCAGTCTA
13205120 CTCCACTGCAACCTCAGGGAGAT
195 CTCCACTGCAACCTCAGGGAGAT
*
13205143 AAGACCTGATGCGATCCACTGTACTGCAACTTTAGAGAGATAAGATCTATTACTTTAATCCGCTC
1 AAGACCTGATGCGATCCACTGTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTC
13205208 CACTACAACTTCAGGGAGATAGGATT
66 CACTACAACTTCAGGGAGATAGGATT
13205234 TGTGGCTTAA
Statistics
Matches: 272, Mismatches: 35, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
217 117 0.43
218 155 0.57
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.28
Consensus pattern (217 bp):
AAGACCTGATGCGATCCACTGTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTC
CACTACAACTTCAGGGAGATAGGATTATCGACTTCAATCTGCTCCACTGCAACCTCAGGGAGATA
AGATTTGCATCTTCGATCTGCCCCACTGCCACTTCAGGGGGATAAGACTTGCTCACTCAGTCTAC
TCCACTGCAACCTCAGGGAGAT
Found at i:13205373 original size:129 final size:129
Alignment explanation
Indices: 13205219--13206099 Score: 1404
Period size: 129 Copynumber: 6.8 Consensus size: 129
13205209 ACTACAACTT
* * * *
13205219 CAGGGAGATAGGATTTGTGGCTTAAATCTGCTTCCTTACACATGAAGATAAGATTCGCTGTCTTC
1 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
* * * *
13205284 GATCTGCTCCACTACTACTTATGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGTTGAC
66 GATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGAC
* *
13205348 CAGGGATATAGGACTTATGGCTTAAATCTGTTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
1 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
* * *
13205413 GATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTATAATTTCCCAACCTATTCTACTGCTGAC
66 GATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGAC
* * *
13205477 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCATTACTCTTGAAGATAAGATTCACCGTCTTC
1 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
* *
13205542 GATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAA-TTCCCTAACCCATTCCACTGCTGAT
66 GATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCC-AACCTATTCCACTGCTGAC
13205606 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
1 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
* *
13205671 GATCTGTTCCGCTACTACTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGAC
66 GATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGAC
* *
13205735 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGATTCGCCGTCTTT
1 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
*
13205800 GATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCTAACCTATTCCACTGCTGAC
66 GATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGAC
** *
13205864 CAGGGATATAGGACTTGTGGCTTAAATCTATTTCCTTACACTTGAAGATAAGATTCGCCGTCTTT
1 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
* *
13205929 GATCTGCTCTGCTACTGCTACTGCTTAGGGAGACAAGATCTGCAATTTCCTAACCTATTCCACTG
66 GATCTG--CT-C--C-GCTACTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTG
13205994 CTGAC
125 CTGAC
* * *
13205999 CAGGGATATAGGACTTGTGGCTTAAATATGCTTCCTTACACTTGAAGATAAGATTCACCATCTTC
1 CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
*
13206064 GATCTACTCCGCTACTGCTTAGGGAGACAAGATCTG
66 GATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTG
13206100 CTATATTTAC
Statistics
Matches: 698, Mismatches: 46, Indels: 16
0.92 0.06 0.02
Matches are distributed among these distances:
128 5 0.01
129 563 0.81
130 6 0.01
131 2 0.00
132 2 0.00
133 2 0.00
134 1 0.00
135 117 0.17
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (129 bp):
CAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTC
GATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGAC
Found at i:13207368 original size:7 final size:7
Alignment explanation
Indices: 13207349--13207412 Score: 89
Period size: 7 Copynumber: 9.3 Consensus size: 7
13207339 TTAGCCTCTC
13207349 CATTTTT
1 CATTTTT
13207356 -ACTTTTT
1 CA-TTTTT
13207363 CATTTTT
1 CATTTTT
13207370 CATTCTTT
1 CATT-TTT
13207378 -A-TTTT
1 CATTTTT
13207383 CATTTTT
1 CATTTTT
13207390 CATTTTT
1 CATTTTT
13207397 CATTTTT
1 CATTTTT
13207404 CATTTTT
1 CATTTTT
13207411 CA
1 CA
13207413 CATTTTTTCG
Statistics
Matches: 52, Mismatches: 0, Indels: 10
0.84 0.00 0.16
Matches are distributed among these distances:
5 3 0.06
6 3 0.06
7 42 0.81
8 4 0.08
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.69
Consensus pattern (7 bp):
CATTTTT
Found at i:13207382 original size:27 final size:27
Alignment explanation
Indices: 13207349--13207409 Score: 88
Period size: 27 Copynumber: 2.2 Consensus size: 27
13207339 TTAGCCTCTC
*
13207349 CATTTTTACTTTTTCATTTTTCATTCTTT
1 CATTTTCA-TTTTTCATTTTTCATT-TTT
13207378 -ATTTTCATTTTTCATTTTTCATTTTT
1 CATTTTCATTTTTCATTTTTCATTTTT
13207404 CATTTT
1 CATTTT
13207410 TCACATTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 3 0.10
27 21 0.70
28 6 0.20
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (27 bp):
CATTTTCATTTTTCATTTTTCATTTTT
Found at i:13208254 original size:21 final size:20
Alignment explanation
Indices: 13208216--13208268 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 20
13208206 CGGCCTCTCC
* *
13208216 TTTTCGTTTTTTCTCTTTTCA
1 TTTTCATTTTTTCAC-TTTCA
* *
13208237 TTTTCATTTTTTGACTTTGA
1 TTTTCATTTTTTCACTTTCA
*
13208257 TTTTGATTTTTT
1 TTTTCATTTTTT
13208269 TTTTCTTTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 15 0.56
21 12 0.44
ACGTcount: A:0.09, C:0.11, G:0.08, T:0.72
Consensus pattern (20 bp):
TTTTCATTTTTTCACTTTCA
Found at i:13208277 original size:7 final size:7
Alignment explanation
Indices: 13208263--13208291 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
13208253 TTGATTTTGA
13208263 TTTT-TT
1 TTTTCTT
13208269 TTTTCTT
1 TTTTCTT
13208276 TTTTCTT
1 TTTTCTT
13208283 TTTTCTT
1 TTTTCTT
13208290 TT
1 TT
13208292 GATTTTGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.18
7 18 0.82
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (7 bp):
TTTTCTT
Found at i:13208294 original size:37 final size:35
Alignment explanation
Indices: 13208252--13208320 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 35
13208242 ATTTTTTGAC
* *
13208252 TTTGATTTTGATTTTTTTTTTCTTTTTTCTTTTTTCT
1 TTTGATTTTGA-TTTTTCTTCCTTTTTT-TTTTTTCT
13208289 TTTGATTTTGATTTTTCTTCCTTTTTTTTTTT
1 TTTGATTTTGATTTTTCTTCCTTTTTTTTTTT
13208321 GAATTGGATC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
35 5 0.17
36 14 0.47
37 11 0.37
ACGTcount: A:0.06, C:0.09, G:0.06, T:0.80
Consensus pattern (35 bp):
TTTGATTTTGATTTTTCTTCCTTTTTTTTTTTTCT
Found at i:13208314 original size:43 final size:44
Alignment explanation
Indices: 13208222--13208320 Score: 105
Period size: 43 Copynumber: 2.3 Consensus size: 44
13208212 CTCCTTTTCG
* **
13208222 TTTTTTCTCTTTTCATTTTCATTTTTTGACTTTGATTTTGATTTT
1 TTTTTTCTTTTTTCATTTT-ATTTTTTGACTTTGATTTTGATTCC
* **
13208267 TTTTTTCTTTTTTC-TTTT-TTCTTTTGATTTTGATTTTTCTTCC
1 TTTTTTCTTTTTTCATTTTATT-TTTTGACTTTGATTTTGATTCC
13208310 TTTTTT-TTTTT
1 TTTTTTCTTTTT
13208321 GAATTGGATC
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
42 7 0.15
43 23 0.49
44 4 0.09
45 13 0.28
ACGTcount: A:0.07, C:0.11, G:0.05, T:0.77
Consensus pattern (44 bp):
TTTTTTCTTTTTTCATTTTATTTTTTGACTTTGATTTTGATTCC
Found at i:13213018 original size:114 final size:114
Alignment explanation
Indices: 13212601--13213094 Score: 785
Period size: 114 Copynumber: 4.3 Consensus size: 114
13212591 GATTTTCAGA
* * * * * *
13212601 AAAGCGCCGC-AAAAAACCTAAGCCCAACGACGTCGTTTTATGCGCTCTCGGGGATTTAGCGACG
1 AAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGAGGATTTAGCGGCG
* * *
13212665 TTTTTAAGAAAGCGCTGCTAATGCTCAGGTCTTTAGCGACGTTTTTTGGG
66 TTTTTAAGAAAGCGCCGCTAATGCTCAGGTCTTTAGCGGC-ATTTTTGGG
* * *
13212715 AAAGCACCGCAAAAAAACCTAAGCCCAACGACGTCGTTTTTTGAGCTTTCGAGGATTTAGCGGCG
1 AAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGAGGATTTAGCGGCG
*
13212780 TTTTTAAGAAAGCGCCGCTAATGCTCAGGTTTTTAGCGGCATTTTTGGG
66 TTTTTAAGAAAGCGCCGCTAATGCTCAGGTCTTTAGCGGCATTTTTGGG
* * *
13212829 AAAGCGCCGC-AAAAAACCTAAGCCTAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAACGGCG
1 AAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGAGGATTTAGCGGCG
13212893 TTTTTAAGAAAGCGCCGCTAATGCTCAGGTCTTTAGCGGCATTTTTGGG
66 TTTTTAAGAAAGCGCCGCTAATGCTCAGGTCTTTAGCGGCATTTTTGGG
*
13212942 GAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGAGGATTTAGCGGCG
1 AAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGAGGATTTAGCGGCG
*
13213007 TTTTTAAGAAAGCGCCGCTAATGCTCAGGTCTTTAGCGGCGTTTTTGGG
66 TTTTTAAGAAAGCGCCGCTAATGCTCAGGTCTTTAGCGGCATTTTTGGG
* *
13213056 GAAGCGTCGCAAAAAAACCTAAGCCCAACGACGCCGTTT
1 AAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTT
13213095 AAGGGTACTT
Statistics
Matches: 355, Mismatches: 23, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
113 106 0.30
114 163 0.46
115 86 0.24
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (114 bp):
AAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGAGGATTTAGCGGCG
TTTTTAAGAAAGCGCCGCTAATGCTCAGGTCTTTAGCGGCATTTTTGGG
Found at i:13213073 original size:228 final size:228
Alignment explanation
Indices: 13212601--13213094 Score: 810
Period size: 227 Copynumber: 2.2 Consensus size: 228
13212591 GATTTTCAGA
* * *
13212601 AAAGCGCCGCAAAAAACCTAAGCCCAACGACGTCGTTTTATGCGCTCTCGGGGATTTAGCGACGT
1 AAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTATGAGCTCTCGGGGATTTAACGACGT
* *
13212666 TTTTAAGAAAGCGCTGCTAATGCTCAGGTCTTTAGCGACGTTTTTTGGGAAAGCACCGCAAAAAA
66 TTTTAAGAAAGCGCCGCTAATGCTCAGGTCTTTAGCGACGATTTTTGGGAAAGCACCGCAAAAAA
* *
13212731 ACCTAAGCCCAACGACGTCGTTTTTTGAGCTTTCGAGGATTTAGCGGCGTTTTTAAGAAAGCGCC
131 ACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGAGGATTTAGCGGCGTTTTTAAGAAAGCGCC
*
13212796 GCTAATGCTCAGGTTTTTAGCGGCATTTTTGGG
196 GCTAATGCTCAGGTCTTTAGCGGCATTTTTGGG
* * * *
13212829 AAAGCGCCGCAAAAAACCTAAGCCTAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAACGGCGT
1 AAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTATGAGCTCTCGGGGATTTAACGACGT
* * *
13212894 TTTTAAGAAAGCGCCGCTAATGCTCAGGTCTTTAGCGGC-ATTTTTGGGGAAGCGCCGCAAAAAA
66 TTTTAAGAAAGCGCCGCTAATGCTCAGGTCTTTAGCGACGATTTTTGGGAAAGCACCGCAAAAAA
13212958 ACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGAGGATTTAGCGGCGTTTTTAAGAAAGCGCC
131 ACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGAGGATTTAGCGGCGTTTTTAAGAAAGCGCC
*
13213023 GCTAATGCTCAGGTCTTTAGCGGCGTTTTTGGG
196 GCTAATGCTCAGGTCTTTAGCGGCATTTTTGGG
* *
13213056 GAAGCGTCGCAAAAAAACCTAAGCCCAACGACGCCGTTT
1 AAAGCGCCGC-AAAAAACCTAAGCCCAACGACGCCGTTT
13213095 AAGGGTACTT
Statistics
Matches: 246, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
227 124 0.50
228 122 0.50
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (228 bp):
AAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTATGAGCTCTCGGGGATTTAACGACGT
TTTTAAGAAAGCGCCGCTAATGCTCAGGTCTTTAGCGACGATTTTTGGGAAAGCACCGCAAAAAA
ACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGAGGATTTAGCGGCGTTTTTAAGAAAGCGCC
GCTAATGCTCAGGTCTTTAGCGGCATTTTTGGG
Found at i:13213359 original size:21 final size:22
Alignment explanation
Indices: 13213322--13213380 Score: 68
Period size: 21 Copynumber: 2.7 Consensus size: 22
13213312 GAGTGTGGAT
*
13213322 TTAGGGA-TTATGGTTTAAGGG
1 TTAGGGATTTAAGGTTTAAGGG
*
13213343 TT-GGGATTTAAGGTTTAGGGG
1 TTAGGGATTTAAGGTTTAAGGG
*
13213364 TTAGGGGTTTAGAGGTT
1 TTAGGGATTTA-AGGTT
13213381 AGACATTAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
20 4 0.12
21 16 0.50
22 7 0.22
23 5 0.16
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (22 bp):
TTAGGGATTTAAGGTTTAAGGG
Found at i:13213382 original size:22 final size:22
Alignment explanation
Indices: 13213340--13213405 Score: 57
Period size: 22 Copynumber: 3.1 Consensus size: 22
13213330 TATGGTTTAA
*
13213340 GGGTT-GGGATTTA-AGGTTTAG
1 GGGTTAGGGGTTTAGAGG-TTAG
13213361 GGGTTAGGGGTTTAGAGGTTAG
1 GGGTTAGGGGTTTAGAGGTTAG
*** *
13213383 ACATTAGGGGTTAAGA-GTTAG
1 GGGTTAGGGGTTTAGAGGTTAG
13213404 GG
1 GG
13213406 ATTTAAGGTT
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
21 10 0.28
22 23 0.64
23 3 0.08
ACGTcount: A:0.23, C:0.02, G:0.44, T:0.32
Consensus pattern (22 bp):
GGGTTAGGGGTTTAGAGGTTAG
Found at i:13213882 original size:44 final size:44
Alignment explanation
Indices: 13213822--13213913 Score: 157
Period size: 44 Copynumber: 2.1 Consensus size: 44
13213812 AAATAAAATT
*
13213822 TTTTAGCATAGCAAAACGGTGTCATTTTATTCAAAATGAAATAA
1 TTTTAGCACAGCAAAACGGTGTCATTTTATTCAAAATGAAATAA
* *
13213866 TTTTAGCACAGTAAAACGGTGTCATTTTGTTCAAAATGAAATAA
1 TTTTAGCACAGCAAAACGGTGTCATTTTATTCAAAATGAAATAA
13213910 TTTT
1 TTTT
13213914 TTGCGGCGTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (44 bp):
TTTTAGCACAGCAAAACGGTGTCATTTTATTCAAAATGAAATAA
Found at i:13214086 original size:101 final size:101
Alignment explanation
Indices: 13213968--13214189 Score: 410
Period size: 101 Copynumber: 2.2 Consensus size: 101
13213958 GACGTTTTTT
13213968 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAAA-TTAGCATAGTAAAACGACGTCATTTT
1 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAAATTTAGCATAGTAAAACGACGTCATTTT
13214032 GTTCAAATTGAAATAATTTTTTTGCGGCGTTTCTATG
66 GTTCAAATTGAAATAA-TTTTTTGCGGCGTTTCTATG
*
13214069 AAAAACGCCGAAAAAAATAAATCAATTTATAAAAAAAATTTAGCATAGTAAAACGACGTCATTTT
1 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAAATTTAGCATAGTAAAACGACGTCATTTT
13214134 GTTCAAATTGAAATAATTTTTTGCGGCGTTTCTATG
66 GTTCAAATTGAAATAATTTTTTGCGGCGTTTCTATG
*
13214170 AAAAACGCCGCAAAAGATAA
1 AAAAACGCCGCAAAAAATAA
13214190 GCAATAGCGG
Statistics
Matches: 117, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
101 75 0.64
102 42 0.36
ACGTcount: A:0.45, C:0.13, G:0.13, T:0.29
Consensus pattern (101 bp):
AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAAATTTAGCATAGTAAAACGACGTCATTTT
GTTCAAATTGAAATAATTTTTTGCGGCGTTTCTATG
Found at i:13214367 original size:141 final size:141
Alignment explanation
Indices: 13214055--13214458 Score: 620
Period size: 132 Copynumber: 3.0 Consensus size: 141
13214045 TAATTTTTTT
* * * *
13214055 GCGGCGTTTCTATGAAAAACGCCGAAAAAAATAAATCAATTTATAAAAAAAATTTAGCATAGTAA
1 GCGGCGTTTTTTTTAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAAATTTAGCATAGTAA
13214120 AACGACGTCATTTTGTTCAAATTGAAATAATTTTTTGCGGCGTTTCTATGAAAAACGCCGCAAAA
66 AACGACGTCATTTTGTTCAAATTGAAATAATTTTTTGCGGCGTTTCTATGAAAAACGCCGCAAAA
13214185 GATAAGCAATA
131 GATAAGCAATA
*
13214196 GCGGCG---TTTTT--AAA----GCAAAAAATAAATCAATTTATGAAAAAAATTTAGCATAGTAA
1 GCGGCGTTTTTTTTAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAAATTTAGCATAGTAA
13214252 AACGACGTCATTTTGTTCAAATTGAAATAATTTTTTGCGGCGTTTCTATGAAAAACGCCGCAAAA
66 AACGACGTCATTTTGTTCAAATTGAAATAATTTTTTGCGGCGTTTCTATGAAAAACGCCGCAAAA
13214317 GATAAGCAATA
131 GATAAGCAATA
13214328 GCGGCGTTTTTTTTAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAAATTTAGCATAGTAA
1 GCGGCGTTTTTTTTAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAAATTTAGCATAGTAA
* * *
13214393 AACGACGTCATTTTGTTCAAATTG----AATTTTTTGCAGCGTTTTTTAT-AAAAACGTCGCAAA
66 AACGACGTCATTTTGTTCAAATTGAAATAATTTTTTGCGGCG-TTTCTATGAAAAACGCCGCAAA
*
13214453 AAATAA
130 AGATAA
13214459 ATCAATTTAT
Statistics
Matches: 243, Mismatches: 10, Indels: 24
0.88 0.04 0.09
Matches are distributed among these distances:
132 122 0.50
135 5 0.02
136 3 0.01
137 34 0.14
138 8 0.03
141 71 0.29
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.30
Consensus pattern (141 bp):
GCGGCGTTTTTTTTAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAAATTTAGCATAGTAA
AACGACGTCATTTTGTTCAAATTGAAATAATTTTTTGCGGCGTTTCTATGAAAAACGCCGCAAAA
GATAAGCAATA
Found at i:13216623 original size:15 final size:16
Alignment explanation
Indices: 13216603--13216633 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
13216593 TAAAGTTCTA
13216603 TTAAA-TGTTTTATAT
1 TTAAATTGTTTTATAT
13216618 TTAAATTGTTTTATAT
1 TTAAATTGTTTTATAT
13216634 ATCCATTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.61
Consensus pattern (16 bp):
TTAAATTGTTTTATAT
Found at i:13218671 original size:43 final size:43
Alignment explanation
Indices: 13218616--13218717 Score: 132
Period size: 43 Copynumber: 2.4 Consensus size: 43
13218606 GTTTGTGATA
* * *
13218616 AAAAGCGTCGCTAAAGGTTATGCTCTTTAGTAGCGATTGTTAG
1 AAAAGCGTCGCTAAAGGTCATGCTCTTTAGCAGCGATTGTTAC
* * * *
13218659 AAAAGCGTCGCTAAAGGTCATGTTCTTTAGCGGCGTTTGTTTC
1 AAAAGCGTCGCTAAAGGTCATGCTCTTTAGCAGCGATTGTTAC
*
13218702 AAAAGCGCCGCTAAAG
1 AAAAGCGTCGCTAAAG
13218718 AACATGACTT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (43 bp):
AAAAGCGTCGCTAAAGGTCATGCTCTTTAGCAGCGATTGTTAC
Found at i:13218731 original size:43 final size:43
Alignment explanation
Indices: 13218683--13218779 Score: 122
Period size: 43 Copynumber: 2.3 Consensus size: 43
13218673 AGGTCATGTT
** *
13218683 CTTTAGCGGCGTTTGTTTCAAAAGCGCCGCTAAAGAACATGAC
1 CTTTAGCGGCGTTTGTAACAAAAGCACCGCTAAAGAACATGAC
* * * * *
13218726 TTTTAGCGGCGTTTGTAAGAGAAGCATCGCTAAAGAACATGGC
1 CTTTAGCGGCGTTTGTAACAAAAGCACCGCTAAAGAACATGAC
13218769 CTTTAGCGGCG
1 CTTTAGCGGCG
13218780 CTTTTTAGCG
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGTAACAAAAGCACCGCTAAAGAACATGAC
Found at i:13219127 original size:24 final size:24
Alignment explanation
Indices: 13219100--13219193 Score: 70
Period size: 24 Copynumber: 4.0 Consensus size: 24
13219090 TTAAAAAATA
*
13219100 AAATAATAATGCATAACAAATTTG
1 AAATAATAATACATAACAAATTTG
* **
13219124 AAATGATAATACATAATGAATTTG
1 AAATAATAATACATAACAAATTTG
* *
13219148 AAA-ACA-AATACATAATAAATCT-
1 AAATA-ATAATACATAACAAATTTG
*
13219170 AAGCTAATAATACATGAA-AAATTT
1 AA-ATAATAATACAT-AACAAATTT
13219194 ATGATGCTAA
Statistics
Matches: 56, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
22 2 0.04
23 15 0.27
24 37 0.66
25 2 0.04
ACGTcount: A:0.55, C:0.09, G:0.07, T:0.29
Consensus pattern (24 bp):
AAATAATAATACATAACAAATTTG
Found at i:13223258 original size:40 final size:40
Alignment explanation
Indices: 13223174--13223398 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
13223164 TTGAATGATG
* * * *
13223174 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
13223214 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
13223254 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
13223293 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
13223333 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
13223374 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
13223399 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 34 0.21
40 119 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:13223420 original size:119 final size:119
Alignment explanation
Indices: 13223174--13223431 Score: 283
Period size: 119 Copynumber: 2.2 Consensus size: 119
13223164 TTGAATGATG
* *
13223174 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
13223239 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
13223293 TCCGGGTTAAGTCCCGAAGGCATTTGTG-TGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
13223356 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
13223413 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
13223432 TACGTGATTT
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.72
120 30 0.26
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:13224903 original size:63 final size:64
Alignment explanation
Indices: 13224812--13224992 Score: 197
Period size: 63 Copynumber: 2.9 Consensus size: 64
13224802 TATCCCTAAA
** * * * *
13224812 GAAGGTGTTGATGCAGGGAATTA-TTGTGTGTGTTATGGTGCTTGTGTAAAATAAACTGGTGTT
1 GAAGGTGTTGATGCAAAGAATGAGTTGTGTGTGTTGTGGTGCTTGTGTAAAATAAACTGGAGCT
** * * *
13224875 GAATTTGTTGATGTAAAGAATG-GTTGTGTGTGCTGTGGTACTTGTGTAAAATAAACTGGAGCT
1 GAAGGTGTTGATGCAAAGAATGAGTTGTGTGTGTTGTGGTGCTTGTGTAAAATAAACTGGAGCT
* * * * *
13224938 GAAGGTGTTGATGCGAGGAATGAG-TGTGCGTGTTGTGATGCTTGTGTCAAATAAA
1 GAAGGTGTTGATGCAAAGAATGAGTTGTGTGTGTTGTGGTGCTTGTGTAAAATAAA
13224993 TTGGGTTAGA
Statistics
Matches: 95, Mismatches: 21, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
63 94 0.99
64 1 0.01
ACGTcount: A:0.25, C:0.06, G:0.33, T:0.35
Consensus pattern (64 bp):
GAAGGTGTTGATGCAAAGAATGAGTTGTGTGTGTTGTGGTGCTTGTGTAAAATAAACTGGAGCT
Found at i:13226887 original size:40 final size:40
Alignment explanation
Indices: 13226834--13226989 Score: 140
Period size: 40 Copynumber: 4.0 Consensus size: 40
13226824 GTTAATACTT
* * *
13226834 TGAAATGGCTATATGAATTGGTTATATAGAAATAGATATA
1 TGAAGTGGTTATATGAATTGGTTATATGGAAATAGATATA
* ** * * *
13226874 TGGAGTGGTTATATGAATCAGTTATACGGAAACAGATAAA
1 TGAAGTGGTTATATGAATTGGTTATATGGAAATAGATATA
* * **
13226914 CGAAATAATTATATGAATTGGTTATATGGAAATA-ATTATA
1 TGAAGTGGTTATATGAATTGGTTATATGGAAATAGA-TATA
* *
13226954 TGAAGTGGTT-TATGAAATGTTTATATGG--ATAGATAT
1 TGAAGTGGTTATATGAATTGGTTATATGGAAATAGATAT
13226990 GTAAGAAGGG
Statistics
Matches: 89, Mismatches: 25, Indels: 7
0.74 0.21 0.06
Matches are distributed among these distances:
37 6 0.07
38 1 0.01
39 17 0.19
40 65 0.73
ACGTcount: A:0.40, C:0.03, G:0.21, T:0.35
Consensus pattern (40 bp):
TGAAGTGGTTATATGAATTGGTTATATGGAAATAGATATA
Found at i:13226977 original size:25 final size:27
Alignment explanation
Indices: 13226915--13226980 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
13226905 ACAGATAAAC
*
13226915 GAAATAATTATATGAATTGGTTATATG
1 GAAATAATTATATGAAGTGGTTATATG
13226942 GAAATAATTATATGAAGTGGTT-TAT-
1 GAAATAATTATATGAAGTGGTTATATG
**
13226967 GAAATGTTTATATG
1 GAAATAATTATATG
13226981 GATAGATATG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
25 12 0.33
26 3 0.08
27 21 0.58
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (27 bp):
GAAATAATTATATGAAGTGGTTATATG
Found at i:13228317 original size:7 final size:7
Alignment explanation
Indices: 13228307--13228386 Score: 160
Period size: 7 Copynumber: 11.4 Consensus size: 7
13228297 ATAATTGAGG
13228307 ATTGAAA
1 ATTGAAA
13228314 ATTGAAA
1 ATTGAAA
13228321 ATTGAAA
1 ATTGAAA
13228328 ATTGAAA
1 ATTGAAA
13228335 ATTGAAA
1 ATTGAAA
13228342 ATTGAAA
1 ATTGAAA
13228349 ATTGAAA
1 ATTGAAA
13228356 ATTGAAA
1 ATTGAAA
13228363 ATTGAAA
1 ATTGAAA
13228370 ATTGAAA
1 ATTGAAA
13228377 ATTGAAA
1 ATTGAAA
13228384 ATT
1 ATT
13228387 TAGGATAGAT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 73 1.00
ACGTcount: A:0.56, C:0.00, G:0.14, T:0.30
Consensus pattern (7 bp):
ATTGAAA
Found at i:13229408 original size:103 final size:105
Alignment explanation
Indices: 13229224--13229430 Score: 328
Period size: 103 Copynumber: 2.0 Consensus size: 105
13229214 TTCCACTCAT
13229224 ATTTATATTTTTTATTTCATGTTGTTTTAAGCTGCTTCTTTTTTTAATGAATGTTTTTAACATAT
1 ATTTATATTTTTTATTTCATGTTGTTTTAAGCTGCTTCTTTTTTTAATGAATGTTTTTAACATAT
* *
13229289 CACCTTCCTTAGTTAAATGATTAAATAATAATTATTTTAC
66 CACCTTCCTTAATTAAATGATTAAATAATAATAATTTTAC
* * *
13229329 ATTTATATTTTTTATTTCATGTTGTTTTAAGTTTCTT-TTTTTTT-ATGAATGTTTTTAGCATAT
1 ATTTATATTTTTTATTTCATGTTGTTTTAAGCTGCTTCTTTTTTTAATGAATGTTTTTAACATAT
* * *
13229392 TAGCTTCCTTAATTAAATTATTAAATAATAATAATTTTA
66 CACCTTCCTTAATTAAATGATTAAATAATAATAATTTTA
13229431 TCACAATTTC
Statistics
Matches: 94, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
103 52 0.55
104 7 0.07
105 35 0.37
ACGTcount: A:0.29, C:0.08, G:0.07, T:0.56
Consensus pattern (105 bp):
ATTTATATTTTTTATTTCATGTTGTTTTAAGCTGCTTCTTTTTTTAATGAATGTTTTTAACATAT
CACCTTCCTTAATTAAATGATTAAATAATAATAATTTTAC
Found at i:13229814 original size:18 final size:18
Alignment explanation
Indices: 13229783--13229817 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
13229773 TAAAATTATA
13229783 AAATAAAATAATTATTTC
1 AAATAAAATAATTATTTC
* *
13229801 AAATATAATTATTATTT
1 AAATAAAATAATTATTT
13229818 TTATATGTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (18 bp):
AAATAAAATAATTATTTC
Found at i:13236417 original size:30 final size:31
Alignment explanation
Indices: 13236363--13236443 Score: 101
Period size: 30 Copynumber: 2.6 Consensus size: 31
13236353 ATTTCTTTAA
* * *
13236363 ATGTGTATAATTAAATCAAAATCAAAGTTTT
1 ATGTGTATGATTGAATCAAAATCAAAGTTTC
*
13236394 ATGTGTATGATTGCATC-AAATCAAAGTTTC
1 ATGTGTATGATTGAATCAAAATCAAAGTTTC
* *
13236424 ATGTATATGATTGAACCAAA
1 ATGTGTATGATTGAATCAAA
13236444 TTACAGTTCA
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
30 26 0.62
31 16 0.38
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.36
Consensus pattern (31 bp):
ATGTGTATGATTGAATCAAAATCAAAGTTTC
Found at i:13238097 original size:15 final size:15
Alignment explanation
Indices: 13238077--13238107 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
13238067 AATGTCACAA
13238077 ATACAACAATGGCAT
1 ATACAACAATGGCAT
*
13238092 ATACAATAATGGCAT
1 ATACAACAATGGCAT
13238107 A
1 A
13238108 GAAATAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.13, T:0.23
Consensus pattern (15 bp):
ATACAACAATGGCAT
Found at i:13240322 original size:24 final size:24
Alignment explanation
Indices: 13240285--13240335 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
13240275 AGGAGATAAG
13240285 ACTAGATGCAATCTGCTCTCTGCA
1 ACTAGATGCAATCTGCTCTCTGCA
**
13240309 ACTAGATGTGATCTGCTCTCTGCA
1 ACTAGATGCAATCTGCTCTCTGCA
13240333 ACT
1 ACT
13240336 TCAGAGAGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (24 bp):
ACTAGATGCAATCTGCTCTCTGCA
Found at i:13240406 original size:44 final size:43
Alignment explanation
Indices: 13240319--13240657 Score: 246
Period size: 44 Copynumber: 7.8 Consensus size: 43
13240309 ACTAGATGTG
* * * *
13240319 ATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TATGGCTTTA
* *
13240362 ATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAT-GGCTTTA
*
13240406 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-TGCCTTCTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATGGC-T-TT-A
* **
13240451 GTCTGC-CTCACTGCAACTTCA-GGAGGATAAGACTTACTTAC-TTA
1 ATCTGCTC-CACTGCAACTTCAGGGA-GATAAGA-TTA-TGGCTTTA
* * * * ***
13240495 GTCTGCTCCACTGCAACTTTAGGGAGATAAGACTA--GATGCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATGGCTTTA
* ** * *
13240536 ATCTGCT-CTCTGCAACTTCAAAGAGATAATATCTAAT-GTTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-T-ATGGCTTTA
* * * * *
13240579 ATCCGCTCAACTGCAACTTCAGGGAGATAGGATTATCAGTTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAT-GGCTTTA
* *
13240623 ATCTGCTCCACTGTAACTTCAGAGAGATAAGATTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTA
13240658 GATGAGATCT
Statistics
Matches: 235, Mismatches: 42, Indels: 37
0.75 0.13 0.12
Matches are distributed among these distances:
40 19 0.08
41 7 0.03
42 5 0.02
43 21 0.09
44 147 0.63
45 32 0.14
46 2 0.01
48 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (43 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATGGCTTTA
Found at i:13240690 original size:24 final size:24
Alignment explanation
Indices: 13240656--13240704 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
13240646 GAGATAAGAT
13240656 TAGATGAGATCTGCTCTCTGCAAC
1 TAGATGAGATCTGCTCTCTGCAAC
* *
13240680 TAGATGCGATCTGCTCTCTGTAAC
1 TAGATGAGATCTGCTCTCTGCAAC
13240704 T
1 T
13240705 TCAGAGAGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.33
Consensus pattern (24 bp):
TAGATGAGATCTGCTCTCTGCAAC
Found at i:13240925 original size:44 final size:43
Alignment explanation
Indices: 13240873--13240981 Score: 121
Period size: 44 Copynumber: 2.5 Consensus size: 43
13240863 CTGCTCTCTG
* * *
13240873 TAACTTCAGAGAGATAAGATCTA-AGGTTTTAATCCGCTCCACTA
1 TAACTTCAGGGAGATAAGAT-TACA-GCTTTAATACGCTCCACTA
* * *
13240917 TAACTTCAGGGAGATAGGATTATCAGCTTTAATATGCTCCACTG
1 TAACTTCAGGGAGATAAGATTA-CAGCTTTAATACGCTCCACTA
*
13240961 CAACTTCAGGGAGATAAGATT
1 TAACTTCAGGGAGATAAGATT
13240982 TGCCATCTTC
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
43 2 0.04
44 52 0.95
45 1 0.02
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.29
Consensus pattern (43 bp):
TAACTTCAGGGAGATAAGATTACAGCTTTAATACGCTCCACTA
Found at i:13240963 original size:369 final size:368
Alignment explanation
Indices: 13240259--13241373 Score: 948
Period size: 369 Copynumber: 3.1 Consensus size: 368
13240249 CTTGGGTCTA
* *
13240259 CTCCACTGTGACTTCAAGGAGATAAGACTAGATGCAATCTGCTCTCTGCAACTAGATGTGATCTG
1 CTCCACTGTAACTTCAAGGAGATAAGACTAGATGCAATCTGCTCTCTGCAACTAGATGCGATCTG
*
13240324 CTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGA
66 CTCTCTGCAACTTCAGAGAGATAAGATCTAAAGTTTTAATCCGCTCCACTGCAACTTCAGGGAGA
* * * *
13240389 TAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCTTCTTCAGTC
131 TAAGATTATCGCCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAAACTTGCCTTCTTCAGTC
* * * *
13240454 TGCCTCACTGCAACTTCAGGAGGATAAGACTTACTTACTTAGTCTGCTCCACTGCAACTTTAGGG
196 TGCCTCACTGCAACTTCAGGAGGATAAGACTTACATACTGAGTCTGCTCCACTGCAACTTCAGAG
* * * * * *
13240519 AGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAAAGAGATAATATCTAATGTTTTAATCCG
261 AGATAAGACTAGATGCAATCCGCTCACTACAACTTCAAAGAGATAATATC-AATGCTTTAATACG
*
13240584 CTCAACTGCAACTTCAGGGAGATAGGATTATCAGTTTTAATCTG
325 CTCAACTGCAACTTCAGGGAGATAAGATTATCAGTTTTAATCTG
*
13240628 CTCCACTGTAACTTC-AGAGAGATAAGATTAGATG-AGATCTGCTCTCTGCAACTAGATGCGATC
1 CTCCACTGTAACTTCAAG-GAGATAAGACTAGATGCA-ATCTGCTCTCTGCAACTAGATGCGATC
* *
13240691 TGCTCTCTGTAACTTCAGAGAGATAAGATCTAAAGTTTTAATCCGCTCCACTGCAACTTCAGGGC
64 TGCTCTCTGCAACTTCAGAGAGATAAGATCTAAAGTTTTAATCCGCTCCACTGCAACTTCAGGGA
** *
13240756 GATAAGATT-T-GCCATGTTCTGTCTGC-CTCACTGTAACTTCA-GGAGGATAAAACTTG-CTTA
129 GATAAGATTATCGCC-T-TT-AATCTGCTC-CACTGCAACTTCAGGGA-GATAAAACTTGCCTT-
* * * * *
13240816 CTT-AGTCTG-CTCCACTGCAACTTTAGG-GAGATAAGAC-TAGATGC-GA-TCTGCT-CTCTGT
188 CTTCAGTCTGCCT-CACTGCAACTTCAGGAG-GATAAGACTTACATACTGAGTCTGCTCCACTGC
* ** * **
13240874 AACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTATAACTTCAGGGAGATAGGATTA
251 AACTTCAGAGAGATAAGA-CT-A-GATGCAATCCGCT-CACTACAACTTCAAAGAGATA--A-TA
* * * *
13240939 TC-A-GCTTTAATATGCTCCACTGCAACTTCAGGGAGATAAGATT-TGCCA-TCTTCAGTCTG
309 TCAATGCTTTAATACGCTCAACTGCAACTTCAGGGAGATAAGATTAT--CAGT-TTTAATCTG
* *
13240998 C-CTCACTATAACTTCTGAA-G-GATAAGAC-----G-----TG--CT-T---ACT---T-AG-T
1 CTC-CACTGTAACTTC--AAGGAGATAAGACTAGATGCAATCTGCTCTCTGCAACTAGATGCGAT
* * * * * * * * *
13241039 CTGCTCCACTACAGCTTTAGGGAGATAAGACCTAAGGTTTTAATCCGCTCCATTGCAACTTCAGA
63 CTGCT-CTCTGCAACTTCAGAGAGATAAGATCTAAAGTTTTAATCCGCTCCACTGCAACTTCAGG
* * * * * * *
13241104 GAGATAGGATTATCGGCTTTAATCTGCTCTACTACAACTTTAGGGAGATAAAATTTGCCATCTTC
127 GAGATAAGATTATCGCCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAAACTTGCCTTCTTC
* * * * *
13241169 AGTCTGCCTCACTACAACTTCAGGAGGATAAAACTTTCTTACTTAGTCTGCTCCACTGCAACTTC
192 AGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTACATACTGAGTCTGCTCCACTGCAACTTC
* * * * * * * * * * *
13241234 AGGGAGATAAGAATAGATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAA
257 AGAGAGATAAGACTAGATGCAATCCGCTCACTACAACTTCAAAGAGATAATAT-CAATGCTTTAA
* * * * *
13241299 T-CTGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTA
321 TAC-GCTCAACTGCAACTTCAGGGAGATAAGATTATCAGTTTTAATCTG
* * * *
13241347 TTCCACTGCAACTTTAGGGAGATAAGA
1 CTCCACTGTAACTTCAAGGAGATAAGA
13241374 TTTGCCATCT
Statistics
Matches: 602, Mismatches: 98, Indels: 112
0.74 0.12 0.14
Matches are distributed among these distances:
347 3 0.00
348 3 0.00
349 57 0.09
350 147 0.24
351 18 0.03
352 4 0.01
353 7 0.01
354 24 0.04
357 1 0.00
358 2 0.00
360 2 0.00
365 21 0.03
366 8 0.01
367 4 0.01
368 21 0.03
369 215 0.36
370 58 0.10
371 2 0.00
372 4 0.01
373 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.30
Consensus pattern (368 bp):
CTCCACTGTAACTTCAAGGAGATAAGACTAGATGCAATCTGCTCTCTGCAACTAGATGCGATCTG
CTCTCTGCAACTTCAGAGAGATAAGATCTAAAGTTTTAATCCGCTCCACTGCAACTTCAGGGAGA
TAAGATTATCGCCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAAACTTGCCTTCTTCAGTC
TGCCTCACTGCAACTTCAGGAGGATAAGACTTACATACTGAGTCTGCTCCACTGCAACTTCAGAG
AGATAAGACTAGATGCAATCCGCTCACTACAACTTCAAAGAGATAATATCAATGCTTTAATACGC
TCAACTGCAACTTCAGGGAGATAAGATTATCAGTTTTAATCTG
Found at i:13241088 original size:177 final size:177
Alignment explanation
Indices: 13240874--13241245 Score: 555
Period size: 177 Copynumber: 2.1 Consensus size: 177
13240864 TGCTCTCTGT
* * * *
13240874 AACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTATAACTTCAGGGAGATAGGATTA
1 AACTTCAGGGAGATAAGACCTAAGGTTTTAATCCGCTCCACTACAACTTCAGAGAGATAGGATTA
* *
13240939 TCAGCTTTAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCAC
66 TCAGCTTTAATATGCTCCACTACAACTTCAGGGAGATAAAATTTGCCATCTTCAGTCTGCCTCAC
* * *
13241004 TATAACTTCTGAAGGATAAGACGTGCTTACTTAGTCTGCTCCACTAC
131 TACAACTTCAGAAGGATAAAACGTGCTTACTTAGTCTGCTCCACTAC
* * * *
13241051 AGCTTTAGGGAGATAAGACCTAAGGTTTTAATCCGCTCCATTGCAACTTCAGAGAGATAGGATTA
1 AACTTCAGGGAGATAAGACCTAAGGTTTTAATCCGCTCCACTACAACTTCAGAGAGATAGGATTA
* * * *
13241116 TCGGCTTTAATCTGCTCTACTACAACTTTAGGGAGATAAAATTTGCCATCTTCAGTCTGCCTCAC
66 TCAGCTTTAATATGCTCCACTACAACTTCAGGGAGATAAAATTTGCCATCTTCAGTCTGCCTCAC
* * * *
13241181 TACAACTTCAGGAGGATAAAACTTTCTTACTTAGTCTGCTCCACTGC
131 TACAACTTCAGAAGGATAAAACGTGCTTACTTAGTCTGCTCCACTAC
13241228 AACTTCAGGGAGATAAGA
1 AACTTCAGGGAGATAAGA
13241246 ATAGATACGA
Statistics
Matches: 172, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
177 172 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (177 bp):
AACTTCAGGGAGATAAGACCTAAGGTTTTAATCCGCTCCACTACAACTTCAGAGAGATAGGATTA
TCAGCTTTAATATGCTCCACTACAACTTCAGGGAGATAAAATTTGCCATCTTCAGTCTGCCTCAC
TACAACTTCAGAAGGATAAAACGTGCTTACTTAGTCTGCTCCACTAC
Found at i:13241089 original size:44 final size:44
Alignment explanation
Indices: 13241041--13241154 Score: 113
Period size: 44 Copynumber: 2.6 Consensus size: 44
13241031 TACTTAGTCT
* *
13241041 GCTCCACTACAGCTTTAGGGAGATAAGACCTA-AGGTTTTAATCC
1 GCTCCACTACAACTTTAGGGAGATAAGA-CTATAGGCTTTAATCC
* * * * * * * *
13241085 GCTCCATTGCAACTTCAGAGAGATAGGATTATCGGCTTTAATCT
1 GCTCCACTACAACTTTAGGGAGATAAGACTATAGGCTTTAATCC
*
13241129 GCTCTACTACAACTTTAGGGAGATAA
1 GCTCCACTACAACTTTAGGGAGATAA
13241155 AATTTGCCAT
Statistics
Matches: 53, Mismatches: 16, Indels: 2
0.75 0.23 0.03
Matches are distributed among these distances:
43 2 0.04
44 51 0.96
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (44 bp):
GCTCCACTACAACTTTAGGGAGATAAGACTATAGGCTTTAATCC
Found at i:13241243 original size:44 final size:42
Alignment explanation
Indices: 13241078--13241460 Score: 170
Period size: 44 Copynumber: 8.8 Consensus size: 42
13241068 ACCTAAGGTT
* * * ** **
13241078 TTAATCCGCTCCATTGCAACTTCAGAGAGATAGGATTATCGGC
1 TTAATCTGCTCCACTGCAACTTCAGGGAGATAAAATT-TCTAC
* * * *
13241121 TTTAATCTGCTCTACTACAACTTTAGGGAGATAAAATTTGCCATC
1 -TTAATCTGCTCCACTGCAACTTCAGGGAGATAAAATTT-CTA-C
* *
13241166 TTCAGTCTGC-CTCACTACAACTTCA-GGAGGATAAAACTTTCTTAC
1 TT-AATCTGCTC-CACTGCAACTTCAGGGA-GATAAAA-TTTC-TAC
* ***
13241211 TTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGAATAGATAC
1 TTAATCTGCTCCACTGCAACTTCAGGGAGATAA-AATTTCTAC
* * * * * * *
13241254 --GATCTGCT-CTCTGCAACTTCAGAGAGATAAGA-TCCAAGGTT
1 TTAATCTGCTCCACTGCAACTTCAGGGAGATAAAATTTCTA---C
** **
13241295 TTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGC
1 TTAATCTGCTCCACTGCAACTTCAGGGAGATAAAATT-TCTAC
** * * *
13241338 TTTAATCTATTCCACTGCAACTTTAGGGAGATAAGATTTGCCATC
1 -TTAATCTGCTCCACTGCAACTTCAGGGAGATAAAATTT-CTA-C
* *
13241383 TTCAATCTGC-CTCATTGCAACTTCA-GGAGGATAAAACTTGCTTAC
1 TT-AATCTGCTC-CACTGCAACTTCAGGGA-GATAAAA-TTTC-TAC
* * *
13241428 TTAGTCTGTTCCATTGCAACTTCAGGGAGATAA
1 TTAATCTGCTCCACTGCAACTTCAGGGAGATAA
13241461 GACTAGATCC
Statistics
Matches: 260, Mismatches: 51, Indels: 56
0.71 0.14 0.15
Matches are distributed among these distances:
38 1 0.00
39 1 0.00
40 20 0.08
41 6 0.02
43 12 0.05
44 145 0.56
45 67 0.26
46 8 0.03
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (42 bp):
TTAATCTGCTCCACTGCAACTTCAGGGAGATAAAATTTCTAC
Found at i:13241330 original size:217 final size:217
Alignment explanation
Indices: 13241060--13241549 Score: 759
Period size: 217 Copynumber: 2.3 Consensus size: 217
13241050 CAGCTTTAGG
* *
13241060 GAGATAAGA-CCTAAGGTTTTAATCCGCTCCATTGCAACTTCAGAGAGATAGGATTATCGGCTTT
1 GAGATAAGATCC-AAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTT
* * *
13241124 AATCTGCTCTACTACAACTTTAGGGAGATAAAATTTGCCATCTTCAGTCTGCCTCACTACAACTT
65 AATCTACTCCACTACAACTTTAGGGAGATAAAATTTGCCATCTTCAATCTGCCTCACTACAACTT
*
13241189 CAGGAGGATAAAACTTTCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGAATAGATAC
130 CAGGAGGATAAAACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGAATAGATAC
** *
13241254 GATCTGCTCTCTGCAACTTCAGA
195 GAGATACTCTCTGCAACTTCAGA
*
13241277 GAGATAAGATCCAAGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTA
1 GAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTA
* * * * *
13241342 ATCTATTCCACTGCAACTTTAGGGAGATAAGATTTGCCATCTTCAATCTGCCTCATTGCAACTTC
66 ATCTACTCCACTACAACTTTAGGGAGATAAAATTTGCCATCTTCAATCTGCCTCACTACAACTTC
* * * *
13241407 AGGAGGATAAAACTTGCTTACTTAGTCTGTTCCATTGCAACTTCAGGGAGATAAGACTAGATCCG
131 AGGAGGATAAAACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGAATAGATACG
*
13241472 AGATACTCTCTGCAACTTTAGA
196 AGATACTCTCTGCAACTTCAGA
* *
13241494 GA-ATAAGATCCAAGGTTTTAATCCGCTCCACTGTAATTTCAGGGAGATAGGATTAT
1 GAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAT
13241550 TGGCCAACGA
Statistics
Matches: 249, Mismatches: 23, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
216 51 0.20
217 196 0.79
218 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (217 bp):
GAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTA
ATCTACTCCACTACAACTTTAGGGAGATAAAATTTGCCATCTTCAATCTGCCTCACTACAACTTC
AGGAGGATAAAACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGAATAGATACG
AGATACTCTCTGCAACTTCAGA
Found at i:13241429 original size:394 final size:394
Alignment explanation
Indices: 13240701--13241463 Score: 1141
Period size: 394 Copynumber: 1.9 Consensus size: 394
13240691 TGCTCTCTGT
* * * *
13240701 AACTTCAGAGAGATAAGATCTAAAGTTTTAATCCGCTCCACTGCAACTTCAGGGCGATAAGATTT
1 AACTTCAGAGAGATAAGATCTAAAGCTTTAATCCGCTCCACTACAACTTCAGGGAGATAAAATTT
* * **
13240766 GCCATGTTCTGTCTGCCTCACTGTAACTTCAGGAGGATAAAACTTGCTTACTTAGTCTGCTCCAC
66 GCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAAACTTGCTTACTTAGTCTGCTCCAC
* * * * *
13240831 TGCAACTTTAGGGAGATAAGACTAGATGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGATCTA
131 TGCAACTTCAGGGAGATAAGAATAGATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCA
* *
13240896 AGGTTTTAATCCGCTCCACTATAACTTCAGGGAGATAGGATTATCAGCTTTAATATGCTCCACTG
196 AGGTTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCAGCTTTAATATACTCCACTG
* * * *
13240961 CAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTATAACTTCTGAAGGATAAGAC
261 CAACTTCAGGGAGATAAGATTTGCCATCTTCAATCTGCCTCACTACAACTTCAGAAGGATAAAAC
* *
13241026 GTGCTTACTTAGTCTGCTCCACTACAGCTTTAGGGAGATAAGACCTAAGGTTTTAATCCGCTCCA
326 GTGCTTACTTAGTCTGCTCCACTACAACTTCAGGGAGATAAGACCTAAGGTTTTAATCCGCTCCA
13241091 TTGC
391 TTGC
* ** * * *
13241095 AACTTCAGAGAGATAGGAT-TATCGGCTTTAATCTGCTCTACTACAACTTTAGGGAGATAAAATT
1 AACTTCAGAGAGATAAGATCTA-AAGCTTTAATCCGCTCCACTACAACTTCAGGGAGATAAAATT
*
13241159 TGCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAAACTTTCTTACTTAGTCTGCTCCA
65 TGCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAAACTTGCTTACTTAGTCTGCTCCA
13241224 CTGCAACTTCAGGGAGATAAGAATAGATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCC
130 CTGCAACTTCAGGGAGATAAGAATAGATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCC
* * * * *
13241289 AAGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTATTCCACT
195 AAGGTTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCAGCTTTAATATACTCCACT
* * * *
13241354 GCAACTTTAGGGAGATAAGATTTGCCATCTTCAATCTGCCTCATTGCAACTTCAGGAGGATAAAA
260 GCAACTTCAGGGAGATAAGATTTGCCATCTTCAATCTGCCTCACTACAACTTCAGAAGGATAAAA
* * * *
13241419 CTTGCTTACTTAGTCTGTTCCATTGCAACTTCAGGGAGATAAGAC
325 CGTGCTTACTTAGTCTGCTCCACTACAACTTCAGGGAGATAAGAC
13241464 TAGATCCGAG
Statistics
Matches: 327, Mismatches: 41, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
393 2 0.01
394 325 0.99
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (394 bp):
AACTTCAGAGAGATAAGATCTAAAGCTTTAATCCGCTCCACTACAACTTCAGGGAGATAAAATTT
GCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAAACTTGCTTACTTAGTCTGCTCCAC
TGCAACTTCAGGGAGATAAGAATAGATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCA
AGGTTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCAGCTTTAATATACTCCACTG
CAACTTCAGGGAGATAAGATTTGCCATCTTCAATCTGCCTCACTACAACTTCAGAAGGATAAAAC
GTGCTTACTTAGTCTGCTCCACTACAACTTCAGGGAGATAAGACCTAAGGTTTTAATCCGCTCCA
TTGC
Found at i:13246594 original size:14 final size:13
Alignment explanation
Indices: 13246553--13246595 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
13246543 ACTCGCCCTT
13246553 CTTCTTTCCTAT-
1 CTTCTTTCCTATC
*
13246565 CTTCTTTCCAACTC
1 CTTCTTTCCTA-TC
13246579 CTTCTTTCTCTATC
1 CTTCTTTC-CTATC
13246593 CTT
1 CTT
13246596 TGTCTGGCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
12 10 0.38
13 1 0.04
14 13 0.50
15 2 0.08
ACGTcount: A:0.09, C:0.37, G:0.00, T:0.53
Consensus pattern (13 bp):
CTTCTTTCCTATC
Found at i:13249551 original size:24 final size:24
Alignment explanation
Indices: 13249512--13249561 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
13249502 GAATTTTCTC
* *
13249512 AAGCTGCTCATTCATTTGCTGTTG
1 AAGCTGCTCATGCATTTCCTGTTG
* *
13249536 AAGCTGCTCCTGCATTTCCTTTTG
1 AAGCTGCTCATGCATTTCCTGTTG
13249560 AA
1 AA
13249562 ACTGTTCTAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.40
Consensus pattern (24 bp):
AAGCTGCTCATGCATTTCCTGTTG
Found at i:13252876 original size:22 final size:21
Alignment explanation
Indices: 13252851--13252907 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 21
13252841 GATAATTGAT
13252851 TTTTCCTTGTTAAAAATCTAGG
1 TTTTCCTT-TTAAAAATCTAGG
* *
13252873 TTTTTC-TATAAAAATCTAGG
1 TTTTCCTTTTAAAAATCTAGG
*
13252893 TAATTCCTTATTAAA
1 T-TTTCCTT-TTAAA
13252908 CTCTAATTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
20 13 0.48
21 4 0.15
22 6 0.22
23 4 0.15
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.46
Consensus pattern (21 bp):
TTTTCCTTTTAAAAATCTAGG
Found at i:13252970 original size:21 final size:21
Alignment explanation
Indices: 13252946--13252996 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
13252936 TTAATTTAGA
* *
13252946 AAAAT-AATAAAATTAATTTTT
1 AAAATGAA-AAAATAAATTATT
13252967 AAAATGAAAAAATAAATTATT
1 AAAATGAAAAAATAAATTATT
13252988 AAAATGAAA
1 AAAATGAAA
13252997 GCTTATTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 25 0.93
22 2 0.07
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (21 bp):
AAAATGAAAAAATAAATTATT
Found at i:13252970 original size:22 final size:22
Alignment explanation
Indices: 13252933--13252996 Score: 62
Period size: 21 Copynumber: 3.0 Consensus size: 22
13252923 TAGAAAAATT
**
13252933 AAATTAATTTAGAAAAAT-AATA
1 AAATTAATTTTTAAAAATGAA-A
13252955 AAATTAATTTTT-AAAATGAAA
1 AAATTAATTTTTAAAAATGAAA
* *
13252976 AAATAAATTATT-AAAATGAAA
1 AAATTAATTTTTAAAAATGAAA
13252997 GCTTATTAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
21 25 0.68
22 12 0.32
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (22 bp):
AAATTAATTTTTAAAAATGAAA
Found at i:13254264 original size:13 final size:14
Alignment explanation
Indices: 13254242--13254274 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
13254232 ATATTTAAAT
13254242 ATTTAATATTA-TA
1 ATTTAATATTATTA
*
13254255 ATTTATTATTATTA
1 ATTTAATATTATTA
13254269 ATTTAA
1 ATTTAA
13254275 ATTCAATGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 10 0.59
14 7 0.41
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
ATTTAATATTATTA
Found at i:13254454 original size:20 final size:21
Alignment explanation
Indices: 13254416--13254456 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
13254406 GTTATCAAAT
13254416 TAAAATAAAAAAATTTAAGTAC
1 TAAAATAAAAAAA-TTAAGTAC
*
13254438 TAAAATGAAAAAA-TAAGTA
1 TAAAATAAAAAAATTAAGTA
13254457 TACTTTAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
22 12 0.67
ACGTcount: A:0.66, C:0.02, G:0.07, T:0.24
Consensus pattern (21 bp):
TAAAATAAAAAAATTAAGTAC
Found at i:13256646 original size:29 final size:31
Alignment explanation
Indices: 13256604--13256680 Score: 104
Period size: 29 Copynumber: 2.5 Consensus size: 31
13256594 TTTACCTCAG
*
13256604 GTTACATTTTAGTCACTTATGTT-T-GAAAT
1 GTTACATTTTAGTCACTTACGTTATCGAAAT
* *
13256633 GTTACATTTTAGTCACTTACGTTATCGTATT
1 GTTACATTTTAGTCACTTACGTTATCGAAAT
*
13256664 GTAACATTTTAGTCACT
1 GTTACATTTTAGTCACT
13256681 GAGCTGTTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
29 22 0.52
30 1 0.02
31 19 0.45
ACGTcount: A:0.26, C:0.14, G:0.13, T:0.47
Consensus pattern (31 bp):
GTTACATTTTAGTCACTTACGTTATCGAAAT
Found at i:13256846 original size:20 final size:20
Alignment explanation
Indices: 13256804--13256846 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
13256794 TTTTGAGCAA
* ** *
13256804 TTTAATTTTTTTTTTGTTTT
1 TTTAACTTTTTTTTCCTTAT
13256824 TTTAACTTTTTTTTCCTTAT
1 TTTAACTTTTTTTTCCTTAT
13256844 TTT
1 TTT
13256847 CCACTCTCTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.12, C:0.07, G:0.02, T:0.79
Consensus pattern (20 bp):
TTTAACTTTTTTTTCCTTAT
Found at i:13256884 original size:27 final size:25
Alignment explanation
Indices: 13256829--13256885 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 25
13256819 GTTTTTTTAA
*
13256829 CTTTTTTTTCCTTATTTTCCACTCT
1 CTTTTTTTTCCTTATTTTCCACTCC
*
13256854 CTTTTGTTTCTCCTTATATTTTC-CTCC
1 CTTTT-TTT-TCCTTAT-TTTCCACTCC
13256881 CTTTT
1 CTTTT
13256886 CTATTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 5 0.19
26 3 0.11
27 15 0.56
28 4 0.15
ACGTcount: A:0.07, C:0.28, G:0.02, T:0.63
Consensus pattern (25 bp):
CTTTTTTTTCCTTATTTTCCACTCC
Found at i:13257050 original size:21 final size:21
Alignment explanation
Indices: 13257024--13257064 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
13257014 AAAAAAGATT
13257024 AAAAATCTTTATTCTGGGTTA
1 AAAAATCTTTATTCTGGGTTA
13257045 AAAAATCTTTATTCTGGGTT
1 AAAAATCTTTATTCTGGGTT
13257065 TTCGTTGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.32, C:0.10, G:0.15, T:0.44
Consensus pattern (21 bp):
AAAAATCTTTATTCTGGGTTA
Found at i:13257879 original size:5 final size:5
Alignment explanation
Indices: 13257865--13257923 Score: 57
Period size: 5 Copynumber: 11.8 Consensus size: 5
13257855 AGGGAGAAGT
* * * * *
13257865 AGAAA AGAAA GGAAA ATAAA AGAAA A-AAA AGAAA ATTAAA AGAAC ATAAA
1 AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA A-GAAA AGAAA AGAAA
13257915 AGAAA AGAA
1 AGAAA AGAA
13257924 TTAAATTGAT
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
4 4 0.10
5 34 0.81
6 4 0.10
ACGTcount: A:0.76, C:0.02, G:0.15, T:0.07
Consensus pattern (5 bp):
AGAAA
Found at i:13257889 original size:10 final size:10
Alignment explanation
Indices: 13257865--13257920 Score: 69
Period size: 10 Copynumber: 5.6 Consensus size: 10
13257855 AGGGAGAAGT
*
13257865 AGAAAAGAAA
1 AGAAAATAAA
*
13257875 GGAAAATAAA
1 AGAAAATAAA
13257885 AGAAAA-AAA
1 AGAAAATAAA
13257894 AGAAAATTAAA
1 AGAAAA-TAAA
*
13257905 AGAACATAAA
1 AGAAAATAAA
13257915 AGAAAA
1 AGAAAA
13257921 GAATTAAATT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
9 9 0.23
10 22 0.56
11 8 0.21
ACGTcount: A:0.77, C:0.02, G:0.14, T:0.07
Consensus pattern (10 bp):
AGAAAATAAA
Found at i:13259226 original size:39 final size:40
Alignment explanation
Indices: 13259183--13259273 Score: 112
Period size: 40 Copynumber: 2.3 Consensus size: 40
13259173 TTGAATTTTC
* *
13259183 ATAGGAATTTGAA-TTTTTGGTTACAAAATTAAGTTTCTA
1 ATAGGAATTTGAAGTATTTGGATACAAAATTAAGTTTCTA
* * * *
13259222 ATAGGAGTTTTAAGTATTTGGATATAAAATTAAGTTTTTA
1 ATAGGAATTTGAAGTATTTGGATACAAAATTAAGTTTCTA
*
13259262 ATAGAAATTTGA
1 ATAGGAATTTGA
13259274 GTAAAAGTTA
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
39 11 0.26
40 31 0.74
ACGTcount: A:0.38, C:0.02, G:0.16, T:0.43
Consensus pattern (40 bp):
ATAGGAATTTGAAGTATTTGGATACAAAATTAAGTTTCTA
Found at i:13259712 original size:20 final size:21
Alignment explanation
Indices: 13259667--13259711 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
13259657 AAAAAAAATT
*
13259667 AAAATTAACAATAATTGTAAA
1 AAAATTAAAAATAATTGTAAA
13259688 AAAATTAAAAATAATTGTAAA
1 AAAATTAAAAATAATTGTAAA
13259709 AAA
1 AAA
13259712 TGTTAATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (21 bp):
AAAATTAAAAATAATTGTAAA
Found at i:13259745 original size:21 final size:21
Alignment explanation
Indices: 13259715--13259765 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
13259705 TAAAAAATGT
* *
13259715 TAATTAAAAATT-ATAAAAAT
1 TAATTTAAAATTCATAAAAAA
*
13259735 TAATTGTAAAATTCTTAAAAAA
1 TAATT-TAAAATTCATAAAAAA
13259757 TAATTTAAA
1 TAATTTAAA
13259766 TTAACAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 5 0.19
21 10 0.38
22 11 0.42
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (21 bp):
TAATTTAAAATTCATAAAAAA
Found at i:13259798 original size:23 final size:23
Alignment explanation
Indices: 13259771--13259816 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
13259761 TTAAATTAAC
13259771 AATTTTTACAA-TTTTTAATGAAT
1 AATTTTTACAACTTTTTAA-GAAT
13259794 AATTTTTACAACTTTTTAAGAAT
1 AATTTTTACAACTTTTTAAGAAT
13259817 TTTCATTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.39, C:0.07, G:0.04, T:0.50
Consensus pattern (23 bp):
AATTTTTACAACTTTTTAAGAAT
Found at i:13260954 original size:99 final size:99
Alignment explanation
Indices: 13260783--13260981 Score: 317
Period size: 99 Copynumber: 2.0 Consensus size: 99
13260773 CAAGCCCTTT
*
13260783 TGCCTTTCCGAGTTACTTCCGCTTTATTTCGGTGCCTTAGAGAATTTCCCTTGAGAATTCTCAAT
1 TGCCTTTCCAAGTTACTTCCGCTTTATTTCGGTGCCTTAGAGAATTTCCCTTGAGAATTCTCAAT
* ** *
13260848 TTCAAGAGATAGGTTGACTTGGGCAGATTTGAAG
66 TTCAAGAGATAAGTTGACTTAAGCAGATTTAAAG
* * *
13260882 TGCCTTTCCAAGTTACTTCCGTTTTATTTCGGTGGCTTAGAGAATTTCCCTTGAGAATTCTCACT
1 TGCCTTTCCAAGTTACTTCCGCTTTATTTCGGTGCCTTAGAGAATTTCCCTTGAGAATTCTCAAT
*
13260947 TTCAAGAGATAAGTTGTCTTAAGCAGATTTAAAG
66 TTCAAGAGATAAGTTGACTTAAGCAGATTTAAAG
13260981 T
1 T
13260982 AAAGATATCT
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
99 91 1.00
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.38
Consensus pattern (99 bp):
TGCCTTTCCAAGTTACTTCCGCTTTATTTCGGTGCCTTAGAGAATTTCCCTTGAGAATTCTCAAT
TTCAAGAGATAAGTTGACTTAAGCAGATTTAAAG
Found at i:13261223 original size:26 final size:25
Alignment explanation
Indices: 13261178--13261227 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
13261168 TAACACTGGC
* *
13261178 TATGTTTTTAATGTAGTGTTTGTTAT
1 TATGATTTTAATGTAATG-TTGTTAT
*
13261204 TATGATTTTAATTTAATGTTGTTA
1 TATGATTTTAATGTAATGTTGTTA
13261228 GTGTTATTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 6 0.29
26 15 0.71
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60
Consensus pattern (25 bp):
TATGATTTTAATGTAATGTTGTTAT
Found at i:13263427 original size:16 final size:16
Alignment explanation
Indices: 13263406--13263450 Score: 58
Period size: 14 Copynumber: 2.9 Consensus size: 16
13263396 TTTTAAAACT
13263406 TATATTTAGATATAAA
1 TATATTTAGATATAAA
*
13263422 TATATTT--ATATGAA
1 TATATTTAGATATAAA
13263436 TATATCTTAGATATA
1 TATAT-TTAGATATA
13263451 TTTGCATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
14 11 0.46
15 2 0.08
16 7 0.29
17 4 0.17
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (16 bp):
TATATTTAGATATAAA
Found at i:13263566 original size:65 final size:65
Alignment explanation
Indices: 13263491--13263618 Score: 204
Period size: 65 Copynumber: 2.0 Consensus size: 65
13263481 AACCAAAATA
* *
13263491 ATATATAATTTATGAAGAAACTAAAAATTAGATTATAAATAT-ATATGTGAAAAATATTTAAATG
1 ATATATAATTTATCAAGAAACTAAAAATTAGAGTATAAATATCATAT-TGAAAAATATTTAAATG
13263555 T
65 T
*
13263556 ATATATAATTTATCAAGAAACTAAAAATTAGAGTATAAATATGCTTATTGAAAAATATTTAAA
1 ATATATAATTTATCAAGAAACTAAAAATTAGAGTATAAATAT-CATATTGAAAAATATTTAAA
13263619 AACAATGATA
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
65 40 0.69
66 15 0.26
67 3 0.05
ACGTcount: A:0.52, C:0.03, G:0.09, T:0.36
Consensus pattern (65 bp):
ATATATAATTTATCAAGAAACTAAAAATTAGAGTATAAATATCATATTGAAAAATATTTAAATGT
Found at i:13267197 original size:16 final size:18
Alignment explanation
Indices: 13267176--13267211 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
13267166 CCAGAAAGAA
13267176 GGAAAAAGAA-AA-AAAG
1 GGAAAAAGAAGAAGAAAG
13267192 GGAAAAAGAAGAAGAAAG
1 GGAAAAAGAAGAAGAAAG
13267210 GG
1 GG
13267212 GCCCAAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 10 0.56
17 2 0.11
18 6 0.33
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (18 bp):
GGAAAAAGAAGAAGAAAG
Found at i:13271352 original size:11 final size:11
Alignment explanation
Indices: 13271331--13271359 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
13271321 TCATCCCATA
13271331 AATTT-AATTC
1 AATTTCAATTC
13271341 AATTTCAATTC
1 AATTTCAATTC
13271352 AATTTCAA
1 AATTTCAA
13271360 GATGGTATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.28
11 13 0.72
ACGTcount: A:0.41, C:0.14, G:0.00, T:0.45
Consensus pattern (11 bp):
AATTTCAATTC
Found at i:13279603 original size:10 final size:10
Alignment explanation
Indices: 13279586--13279630 Score: 65
Period size: 10 Copynumber: 4.5 Consensus size: 10
13279576 AATTTAATTC
13279586 TTTTCTTTTA
1 TTTTCTTTTA
*
13279596 TGTTCTTTTAA
1 TTTTCTTTT-A
13279607 TTTTCTTTT-
1 TTTTCTTTTA
13279616 TTTTCTTTTA
1 TTTTCTTTTA
13279626 TTTTC
1 TTTTC
13279631 CATTCTTTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 9 0.29
10 13 0.42
11 9 0.29
ACGTcount: A:0.09, C:0.11, G:0.02, T:0.78
Consensus pattern (10 bp):
TTTTCTTTTA
Found at i:13279623 original size:20 final size:20
Alignment explanation
Indices: 13279586--13279630 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
13279576 AATTTAATTC
13279586 TTTTCTTTTATGTTCTTTTAA
1 TTTTCTTTTATGTTCTTTT-A
*
13279607 TTTTCTTTT-TTTTCTTTTA
1 TTTTCTTTTATGTTCTTTTA
13279626 TTTTC
1 TTTTC
13279631 CATTCTTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 6 0.26
20 8 0.35
21 9 0.39
ACGTcount: A:0.09, C:0.11, G:0.02, T:0.78
Consensus pattern (20 bp):
TTTTCTTTTATGTTCTTTTA
Found at i:13279639 original size:20 final size:20
Alignment explanation
Indices: 13279598--13279641 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
13279588 TTCTTTTATG
* *
13279598 TTCTTTTAATTTTCTTTTTT
1 TTCTTTTAATTTTCATTCTT
13279618 TTCTTTT-ATTTTCCATTCTT
1 TTCTTTTAATTTT-CATTCTT
13279638 TTCT
1 TTCT
13279642 ACTTCTCCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.09, C:0.16, G:0.00, T:0.75
Consensus pattern (20 bp):
TTCTTTTAATTTTCATTCTT
Found at i:13280464 original size:21 final size:21
Alignment explanation
Indices: 13280440--13280483 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
13280430 CTTCAACGAA
13280440 AACCCAGAATAAAGATTTTTT
1 AACCCAGAATAAAGATTTTTT
13280461 AACCCAGAATAAAGATTTTTT
1 AACCCAGAATAAAGATTTTTT
13280482 AA
1 AA
13280484 TCTTTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (21 bp):
AACCCAGAATAAAGATTTTTT
Found at i:13280889 original size:29 final size:31
Alignment explanation
Indices: 13280818--13280894 Score: 104
Period size: 29 Copynumber: 2.5 Consensus size: 31
13280808 TTAACAGCTC
* *
13280818 AGTGACTAAAATGTTACAATACGATAACGTA
1 AGTGACTAAAATGTAACAATACGATAACATA
* *
13280849 AGTGACTAAAATGTAACATTTC-A-AACATA
1 AGTGACTAAAATGTAACAATACGATAACATA
13280878 AGTGACTAAAATGTAAC
1 AGTGACTAAAATGTAAC
13280895 CTGAGGTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
29 22 0.52
30 1 0.02
31 19 0.45
ACGTcount: A:0.47, C:0.13, G:0.14, T:0.26
Consensus pattern (31 bp):
AGTGACTAAAATGTAACAATACGATAACATA
Found at i:13282271 original size:30 final size:29
Alignment explanation
Indices: 13282218--13282276 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
13282208 CAAAATAGAT
13282218 AAATATAAATAAAAATTGATATATATAATG
1 AAATATAAATAAAAATT-ATATATATAATG
*
13282248 AAATATAAATAGAATAATT-TATATTTAAT
1 AAATATAAATA-AA-AATTATATATATAAT
13282277 TTGCGAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 20 0.77
31 2 0.08
32 4 0.15
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (29 bp):
AAATATAAATAAAAATTATATATATAATG
Found at i:13287312 original size:28 final size:27
Alignment explanation
Indices: 13287255--13287406 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
13287245 TAAATTGTGC
*
13287255 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
13287282 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
13287310 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
13287337 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
13287365 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
13287392 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
13287407 GACTTAATAC
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:13287319 original size:55 final size:55
Alignment explanation
Indices: 13287255--13287406 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
13287245 TAAATTGTGC
*
13287255 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
13287310 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
13287365 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
13287407 GACTTAATAC
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:13289431 original size:40 final size:40
Alignment explanation
Indices: 13289387--13289595 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 40
13289377 GTGCTCATGA
* * *
13289387 TTGTACTTCGGTACCCCTGAATGTAGATACGTGCCCCTTT
1 TTGTACTTCGGTACCCCTGAATGCACATACGTGCCCCTGT
* *
13289427 TTGTACTTCGATACCCCTGAATGCACATACGTGCCCCTGC
1 TTGTACTTCGGTACCCCTGAATGCACATACGTGCCCCTGT
* * * *
13289467 TTGTACTTCAGTA-CCCTAAATGCACATACGTGCCCTTAT
1 TTGTACTTCGGTACCCCTGAATGCACATACGTGCCCCTGT
* * * * *
13289506 TTATACTTTGGTACCCTTGAATGCATATACGTGCCCCTGA
1 TTGTACTTCGGTACCCCTGAATGCACATACGTGCCCCTGT
* * * * *
13289546 TTGTACTTCAGTACCCTTGAATACATATACGTGCCCCTAT
1 TTGTACTTCGGTACCCCTGAATGCACATACGTGCCCCTGT
13289586 TTGTACTTCG
1 TTGTACTTCG
13289596 AAACTCCTTA
Statistics
Matches: 141, Mismatches: 27, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
39 32 0.23
40 109 0.77
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (40 bp):
TTGTACTTCGGTACCCCTGAATGCACATACGTGCCCCTGT
Found at i:13304101 original size:17 final size:17
Alignment explanation
Indices: 13304079--13304115 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
13304069 GATAAGTATA
*
13304079 CATTGTCATTGCATTTT
1 CATTGTCATTACATTTT
13304096 CATTGTCATTACATTTT
1 CATTGTCATTACATTTT
13304113 CAT
1 CAT
13304116 GATTAGTGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.19, G:0.08, T:0.51
Consensus pattern (17 bp):
CATTGTCATTACATTTT
Found at i:13309890 original size:55 final size:55
Alignment explanation
Indices: 13309831--13309936 Score: 176
Period size: 55 Copynumber: 1.9 Consensus size: 55
13309821 GATTTTTTGG
* * *
13309831 TGAAATTGTAGTTGGGGATTAAATTGTTAAAATTATAAATCCATGGGTTTTTTAA
1 TGAAATTGTAGTTAGGGACTAAATTGTTAAAATTATAAATCCATAGGTTTTTTAA
*
13309886 TGAAATTTTAGTTAGGGACTAAATTGTTAAAATTATAAATCCATAGGTTTT
1 TGAAATTGTAGTTAGGGACTAAATTGTTAAAATTATAAATCCATAGGTTTT
13309937 ACTGTGAATT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 47 1.00
ACGTcount: A:0.36, C:0.05, G:0.18, T:0.42
Consensus pattern (55 bp):
TGAAATTGTAGTTAGGGACTAAATTGTTAAAATTATAAATCCATAGGTTTTTTAA
Found at i:13316998 original size:32 final size:32
Alignment explanation
Indices: 13316962--13317024 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
13316952 TGAAAGCTTT
13316962 TGTTGTATGCCATTATGGTTGAGAGCTCTATA
1 TGTTGTATGCCATTATGGTTGAGAGCTCTATA
*
13316994 TGTTGTATGCCATTATGGTTGAGAGGTCTAT
1 TGTTGTATGCCATTATGGTTGAGAGCTCTAT
13317025 CAATGTTGGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.21, C:0.11, G:0.27, T:0.41
Consensus pattern (32 bp):
TGTTGTATGCCATTATGGTTGAGAGCTCTATA
Found at i:13319252 original size:39 final size:39
Alignment explanation
Indices: 13319101--13319270 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 39
13319091 GGACTAAGAT
*
13319101 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCA-TTGTGCGAGATACTAAA-TCCGGGTTAAGTC
*
13319141 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGATACTAAATCCGGGTTAAGTC
* * *
13319181 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
13319221 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGATACTAAATCCGGGTTAAGTC
13319260 CCGAAGGCATT
1 CCGAAGGCATT
13319271 TGAACAAGGA
Statistics
Matches: 117, Mismatches: 10, Indels: 7
0.87 0.07 0.05
Matches are distributed among these distances:
39 38 0.32
40 75 0.64
41 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGATACTAAATCCGGGTTAAGTC
Done.