Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 49 of 221
Found at i:14050204 original size:53 final size:52
Alignment explanation
Indices: 14050120--14050262 Score: 153
Period size: 54 Copynumber: 2.7 Consensus size: 52
14050110 GAACATATCA
* * *
14050120 TGTAAGACCGTAATTAGTGGGTTATGGCATCATAT-AAAAAGAAGACAATGTTG
1 TGTAAGACTGTAACTAATGGGTTATGGCATCATATGAAAAA-AA-ACAATGTTG
* * * *
14050173 TGTAAGGCTGTAACTAATGGGTTATGACATCATATGGGTAAAAAAACCATGTTG
1 TGTAAGACTGTAACTAATGGGTTATGGCATCATAT--GAAAAAAAACAATGTTG
* * *
14050227 TGTAAGACTGTAACTATTAGGTTATGGCATGATATG
1 TGTAAGACTGTAACTAATGGGTTATGGCATCATATG
14050263 GGTAGAACAC
Statistics
Matches: 75, Mismatches: 12, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
52 1 0.01
53 30 0.40
54 38 0.51
55 2 0.03
56 4 0.05
ACGTcount: A:0.35, C:0.10, G:0.24, T:0.31
Consensus pattern (52 bp):
TGTAAGACTGTAACTAATGGGTTATGGCATCATATGAAAAAAAACAATGTTG
Found at i:14050303 original size:53 final size:53
Alignment explanation
Indices: 14050190--14050369 Score: 170
Period size: 53 Copynumber: 3.4 Consensus size: 53
14050180 CTGTAACTAA
* * * * **
14050190 TGGGTTATGACATCATATGGGTAAAAAAACCATGTTGTGTAAGACTGTAACTAT-
1 TGGGTTATGGCATCATATGGGT-AAAACACCATATCGTGTAAGACCATAAC-ATG
* * *
14050244 TAGGTTATGGCATGATATGGGTAGAACACCATATCGTGTAAGACCATAACATG
1 TGGGTTATGGCATCATATGGGTAAAACACCATATCGTGTAAGACCATAACATG
* * *
14050297 TGGGTTATGGCATTATATGGGAAAAAGC-CCATATCATGTAAGA-CAGTAAC-TGG
1 TGGGTTATGGCATCATATGGGTAAAA-CACCATATCGTGTAAGACCA-TAACAT-G
*
14050350 TGGGTTATGGAATCATATGG
1 TGGGTTATGGCATCATATGG
14050370 AAAGATTTAA
Statistics
Matches: 106, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
52 5 0.05
53 81 0.76
54 20 0.19
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (53 bp):
TGGGTTATGGCATCATATGGGTAAAACACCATATCGTGTAAGACCATAACATG
Found at i:14050593 original size:28 final size:28
Alignment explanation
Indices: 14050552--14050730 Score: 105
Period size: 28 Copynumber: 6.4 Consensus size: 28
14050542 AAGGGTAAGA
* *
14050552 CTTTGTGGCAAACCTCTTAAAGGATAGC
1 CTTTGTGGCAAACCTCTTAAAGGAAAAC
** *
14050580 CTTTGTGGTGAACCTGTTAAAGGAAAAC
1 CTTTGTGGCAAACCTCTTAAAGGAAAAC
* * *
14050608 CTTTGTGGCAAAACT-TTGGAAAGGTAAGC
1 CTTTGTGGCAAACCTCTT--AAAGGAAAAC
* * *
14050637 CTTTGTGGCAAACCT-TTTAATGAACAC
1 CTTTGTGGCAAACCTCTTAAAGGAAAAC
* * ** * * * *
14050664 CTTTATGACAAATATGTGAAAGGACAAT
1 CTTTGTGGCAAACCTCTTAAAGGAAAAC
* *
14050692 CTCTGTGGCAAA-CTC-TAGACAGGAAAGC
1 CTTTGTGGCAAACCTCTTA-A-AGGAAAAC
14050720 CTTTGTGGCAA
1 CTTTGTGGCAA
14050731 TCTCCGTAAA
Statistics
Matches: 110, Mismatches: 36, Indels: 10
0.71 0.23 0.06
Matches are distributed among these distances:
26 1 0.01
27 20 0.18
28 65 0.59
29 24 0.22
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (28 bp):
CTTTGTGGCAAACCTCTTAAAGGAAAAC
Found at i:14055578 original size:63 final size:63
Alignment explanation
Indices: 14055461--14055826 Score: 450
Period size: 63 Copynumber: 5.9 Consensus size: 63
14055451 CTTTATAGCC
* * ** *
14055461 AACATACATTCGGATAAC--ATATATATAATTCAAACAATTAAATTCATCTTATAGAACTCAA
1 AACATACATTCGGCTAACATATATATATAATTCATACAATTAGTTTCAACTTATAGAACTCAA
* * *
14055522 AACATACATTCGACTAACATATATATATAATTTATACAATTAGTTTCAACTCATAGAACTCAA
1 AACATACATTCGGCTAACATATATATATAATTCATACAATTAGTTTCAACTTATAGAACTCAA
*
14055585 TACATACATT-GGCTAACATAT-T-TATAATTCATACAATTAGTTTCAACTTATCA-AACTCAA
1 AACATACATTCGGCTAACATATATATATAATTCATACAATTAGTTTCAACTTAT-AGAACTCAA
* * *
14055645 AACATACATTTGGCTAACATATTTATATAATTCAT-CAAATTAAG-TTCAGCTTATAGAACTCAA
1 AACATACATTCGGCTAACATATATATATAATTCATAC-AATT-AGTTTCAACTTATAGAACTCAA
14055708 AACATACATT-GGCTAAC--ATATATATAATTCATACAATTAGTTTCAACTTATCA-AACTCAA
1 AACATACATTCGGCTAACATATATATATAATTCATACAATTAGTTTCAACTTAT-AGAACTCAA
* * * ** *
14055768 AACGTACATTCGGCTAACATATTTATATAATTCATAAAATTAAATTCATCTTATAGAAC
1 AACATACATTCGGCTAACATATATATATAATTCATACAATTAGTTTCAACTTATAGAAC
14055827 ATATATATAT
Statistics
Matches: 267, Mismatches: 22, Indels: 30
0.84 0.07 0.09
Matches are distributed among these distances:
59 2 0.01
60 86 0.32
61 38 0.14
62 21 0.08
63 118 0.44
64 2 0.01
ACGTcount: A:0.43, C:0.17, G:0.06, T:0.34
Consensus pattern (63 bp):
AACATACATTCGGCTAACATATATATATAATTCATACAATTAGTTTCAACTTATAGAACTCAA
Found at i:14055810 original size:123 final size:123
Alignment explanation
Indices: 14055461--14055826 Score: 529
Period size: 123 Copynumber: 3.0 Consensus size: 123
14055451 CTTTATAGCC
* * ** *
14055461 AACATACATTCGGATAACATATATATAATTCAAACAATTAAATTCATCTTAT-AGAACTCAAAAC
1 AACATACATT-GGCTAACATATATATAATTCATACAATTAGTTTCAACTTATCA-AACTCAAAAC
* * * * *
14055525 ATACATTCGACTAACATATATATATAATTTATACAATT-AGTTTCAACTCATAGAACTCAA
64 ATACATTCGGCTAACATATTTATATAATTCATAAAATTAAG-TTCAACTTATAGAACTCAA
* *
14055585 TACATACATTGGCTAACATATTTATAATTCATACAATTAGTTTCAACTTATCAAACTCAAAACAT
1 AACATACATTGGCTAACATATATATAATTCATACAATTAGTTTCAACTTATCAAACTCAAAACAT
* * *
14055650 ACATTTGGCTAACATATTTATATAATTCATCAAATTAAGTTCAGCTTATAGAACTCAA
66 ACATTCGGCTAACATATTTATATAATTCATAAAATTAAGTTCAACTTATAGAACTCAA
*
14055708 AACATACATTGGCTAACATATATATAATTCATACAATTAGTTTCAACTTATCAAACTCAAAACGT
1 AACATACATTGGCTAACATATATATAATTCATACAATTAGTTTCAACTTATCAAACTCAAAACAT
* *
14055773 ACATTCGGCTAACATATTTATATAATTCATAAAATTAAATTCATCTTATAGAAC
66 ACATTCGGCTAACATATTTATATAATTCATAAAATTAAGTTCAACTTATAGAAC
14055827 ATATATATAT
Statistics
Matches: 218, Mismatches: 22, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
123 206 0.94
124 12 0.06
ACGTcount: A:0.43, C:0.17, G:0.06, T:0.34
Consensus pattern (123 bp):
AACATACATTGGCTAACATATATATAATTCATACAATTAGTTTCAACTTATCAAACTCAAAACAT
ACATTCGGCTAACATATTTATATAATTCATAAAATTAAGTTCAACTTATAGAACTCAA
Found at i:14060417 original size:15 final size:14
Alignment explanation
Indices: 14060396--14060431 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
14060386 ATAATCCTTA
*
14060396 ATAATTATCTTAAT
1 ATAATTATCCTAAT
14060410 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
14060425 ATAATTA
1 ATAATTA
14060432 AAATAGAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:14062350 original size:22 final size:23
Alignment explanation
Indices: 14062299--14062363 Score: 64
Period size: 22 Copynumber: 2.9 Consensus size: 23
14062289 AATAAGTAAT
*
14062299 AAATAATAAAATAAAATAAAGTA
1 AAATAATAAATTAAAATAAAGTA
*
14062322 ATA-AATAAATTAAAGA-AAA-TA
1 AAATAATAAATTAAA-ATAAAGTA
*
14062343 AAATAATAAATAAATAATAAA
1 AAATAATAAATTAA-AATAAA
14062364 AAATCTCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
21 4 0.12
22 23 0.68
23 7 0.21
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (23 bp):
AAATAATAAATTAAAATAAAGTA
Found at i:14062366 original size:26 final size:25
Alignment explanation
Indices: 14062295--14062394 Score: 96
Period size: 26 Copynumber: 3.8 Consensus size: 25
14062285 TCCAAATAAG
*
14062295 TAATAAAT-AATAAAATAAAATAAAG
1 TAATAAATAAATAAAA-AAAATAAAA
*
14062320 TAATAAATAAATTAAAGAAAATAAAA
1 TAATAAATAAA-TAAAAAAAATAAAA
14062346 TAATAAATAAATAATAAAAAATCTCAAAA
1 TAATAAATAAATAA-AAAAAA--T-AAAA
*
14062375 AAATAAA-AAATAAAATAAAA
1 TAATAAATAAATAAAA-AAAA
14062395 GTTGGGTTGC
Statistics
Matches: 64, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
25 11 0.17
26 26 0.41
27 6 0.09
28 11 0.17
29 10 0.16
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.22
Consensus pattern (25 bp):
TAATAAATAAATAAAAAAAATAAAA
Found at i:14062394 original size:18 final size:18
Alignment explanation
Indices: 14062299--14062394 Score: 72
Period size: 18 Copynumber: 5.1 Consensus size: 18
14062289 AATAAGTAAT
14062299 AAATAATAAAATAAAATAA
1 AAATAA-AAAATAAAATAA
* *
14062318 AGTAATAAATAAATTAAA-GA
1 A--AATAAA-AAATAAAATAA
14062338 AAATAAAATAAT-AAATAA
1 AAATAAAA-AATAAAATAA
**
14062356 ATAATAAAAAATCTCAA-AA
1 A-AATAAAAAAT-AAAATAA
14062375 AAATAAAAAATAAAATAA
1 AAATAAAAAATAAAATAA
14062393 AA
1 AA
14062395 GTTGGGTTGC
Statistics
Matches: 62, Mismatches: 6, Indels: 19
0.71 0.07 0.22
Matches are distributed among these distances:
17 6 0.10
18 28 0.45
19 11 0.18
20 5 0.08
21 12 0.19
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (18 bp):
AAATAAAAAATAAAATAA
Found at i:14068254 original size:40 final size:40
Alignment explanation
Indices: 14068156--14068458 Score: 405
Period size: 40 Copynumber: 7.6 Consensus size: 40
14068146 TCCTCGTTCA
* * * * *
14068156 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
14068195 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14068235 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14068275 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14068315 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
14068355 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
14068395 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
14068435 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
14068459 CAGCATTCAC
Statistics
Matches: 240, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 37 0.15
40 195 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:14073787 original size:16 final size:16
Alignment explanation
Indices: 14073762--14073792 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14073752 TTGATTTAAG
*
14073762 TCATTTATTTATTTTC
1 TCATTCATTTATTTTC
14073778 TCATTCATTTATTTT
1 TCATTCATTTATTTT
14073793 AGTTATTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.13, G:0.00, T:0.68
Consensus pattern (16 bp):
TCATTCATTTATTTTC
Found at i:14074102 original size:21 final size:22
Alignment explanation
Indices: 14074062--14074102 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
14074052 GTCAGTTTAA
*
14074062 CCTTAAAAACCCTTATTAAACC
1 CCTTAAAAACCCTCATTAAACC
*
14074084 CCTTAAATA-CCTCATTAAA
1 CCTTAAAAACCCTCATTAAA
14074103 GCCTTCTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.41, C:0.29, G:0.00, T:0.29
Consensus pattern (22 bp):
CCTTAAAAACCCTCATTAAACC
Found at i:14075942 original size:85 final size:85
Alignment explanation
Indices: 14075799--14075977 Score: 358
Period size: 85 Copynumber: 2.1 Consensus size: 85
14075789 GGCCGGCCAT
14075799 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
14075864 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
14075884 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
14075949 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
14075969 GAGCATGGG
1 GAGCATGGG
14075978 CAATAAAATA
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 94 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:14077282 original size:79 final size:81
Alignment explanation
Indices: 14077146--14077328 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
14077136 TCGAATGATG
* *
14077146 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
14077210 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
14077225 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
14077287 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
14077305 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
14077329 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:14077337 original size:40 final size:39
Alignment explanation
Indices: 14077147--14077330 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
14077137 CGAATGATGT
* * * *
14077147 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
14077187 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
14077227 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
14077265 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
14077306 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
14077331 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:14077361 original size:79 final size:79
Alignment explanation
Indices: 14077198--14077363 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
14077188 CGGACTAAGA
* **
14077198 TCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTA
1 TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTA
*
14077263 AATCCGGGTTAAGT
66 AATCCGGGTTAAAT
* * *
14077277 CCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAG
1 TCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-
** *
14077340 CTTTAT-CTGGTTAAAT
63 CTAAATCCGGGTTAAAT
14077356 TCCGAAGG
1 TCCGAAGG
14077364 TACGTGATTC
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 50 0.68
80 21 0.29
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTA
AATCCGGGTTAAAT
Found at i:14086576 original size:56 final size:51
Alignment explanation
Indices: 14086352--14086595 Score: 285
Period size: 50 Copynumber: 4.7 Consensus size: 51
14086342 GATCAAAACA
* ** * * *
14086352 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTTATCATCTCGG
* * * ** *
14086403 TGCCCATGTCATGTCCCAGACATGGTCTTACGGGGGACCTT-TCATCCCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTTATCATCTCGG
*
14086453 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGA-CTTATCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTTATCATCTCGG
*
14086503 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATGATCTCAAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCT-T-ATCATCTC--GG
* *
14086558 ATGTCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA
14086596 TCTCTTTACC
Statistics
Matches: 165, Mismatches: 21, Indels: 9
0.85 0.11 0.05
Matches are distributed among these distances:
49 3 0.02
50 81 0.49
51 36 0.22
52 1 0.01
53 7 0.04
55 2 0.01
56 35 0.21
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.26
Consensus pattern (51 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTTATCATCTCGG
Found at i:14088586 original size:29 final size:29
Alignment explanation
Indices: 14088544--14088625 Score: 128
Period size: 29 Copynumber: 2.8 Consensus size: 29
14088534 ACCTCACTTT
* *
14088544 TATACCTAAAGATTTAGATCACTTGTCTC
1 TATACCTAAAGATTTAGATCACTCGTCTA
*
14088573 TATACCTAAAGATTTAGATCACTCGTGTA
1 TATACCTAAAGATTTAGATCACTCGTCTA
*
14088602 TATACCTTAAGATTTAGATCACTC
1 TATACCTAAAGATTTAGATCACTC
14088626 ATCTCTAAGT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 49 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.37
Consensus pattern (29 bp):
TATACCTAAAGATTTAGATCACTCGTCTA
Found at i:14090393 original size:96 final size:95
Alignment explanation
Indices: 14090197--14090492 Score: 340
Period size: 89 Copynumber: 3.2 Consensus size: 95
14090187 TAAATAAGGG
* * * * * *
14090197 ATTAGGGTTTAGGGTTTCTTAATTAAATTAATTATAAATTTTT-CAAAATTGGTTTA-GGTTTCG
1 ATTAGGGTTTAGGG-TTCTTGAGTAAATTAATTATAAATTTTTAAAAAATTAGATTAGGGTTTAG
* * * *
14090260 TGTTTATGGTTTGTAAAGAAAAATCAATTAA
65 TGTTTAAGGTTTTTAAGGAAAAATCAAATAA
14090291 ATTAGGGTTTAGGGTTACTTGAGTAAATTAATTA-AAATTTTTTAAAAAATTAGATTAGGGTTTA
1 ATTAGGGTTTAGGGTT-CTTGAGTAAATTAATTATAAA-TTTTTAAAAAATTAGATTAGGGTTTA
* *
14090355 GTGTTAAAGGTTTTTAAGGAAAAATGAAATAA
64 GTGTTTAAGGTTTTTAAGGAAAAATCAAATAA
* * *
14090387 ATTAGGGTTTA--G-TGTTGAGTAAATTAATTATAAA---TTAAAAAAATAGATTAGAGTTTAGT
1 ATTAGGGTTTAGGGTTCTTGAGTAAATTAATTATAAATTTTTAAAAAATTAGATTAGGGTTTAGT
*
14090446 GTTTAGGGTTTTTAAGGAAAAACTCAAATAA
66 GTTTAAGGTTTTTAAGGAAAAA-TCAAATAA
*
14090477 ATTAGGGTTTGGGGTT
1 ATTAGGGTTTAGGGTT
14090493 TAGGGTTACT
Statistics
Matches: 174, Mismatches: 19, Indels: 19
0.82 0.09 0.09
Matches are distributed among these distances:
89 43 0.25
90 17 0.10
92 17 0.10
93 10 0.06
94 35 0.20
95 10 0.06
96 42 0.24
ACGTcount: A:0.38, C:0.02, G:0.20, T:0.40
Consensus pattern (95 bp):
ATTAGGGTTTAGGGTTCTTGAGTAAATTAATTATAAATTTTTAAAAAATTAGATTAGGGTTTAGT
GTTTAAGGTTTTTAAGGAAAAATCAAATAA
Found at i:14090757 original size:126 final size:126
Alignment explanation
Indices: 14090529--14090820 Score: 435
Period size: 126 Copynumber: 2.3 Consensus size: 126
14090519 TAATTTAAAA
*
14090529 AAGCTCCCACGTGGACGCT-CTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCAAAAAGACGTT
1 AAGCTCCCACGTGGACG-TGCTTTTGCTACAATAGCTCCTGAAAAAATAATTTCAAAAAGACGTT
*
14090593 TCTGAGCAAATAGTGTCAAAAACGCTTTAAGTACGATGCTTTGTCTA-CAAAAGTACTGAAAG
65 TCTGAGCAAATAGTGTCAAAAACGCTTTAAGCACGATGCTTTGTC-AGCAAAAGTACTGAAAG
* ** **
14090655 AAGCTCCCACGTGGACGTGCTTTTGCTATAATAGCTCCTGAAAAAATAATTTTGAGTAGACGTTT
1 AAGCTCCCACGTGGACGTGCTTTTGCTACAATAGCTCCTGAAAAAATAATTTCAAAAAGACGTTT
* * *
14090720 TTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAAATGTACTGAAAG
66 CTGAGCAAATAGTGTCAAAAACGCTTTAAGCACGATGCTTTGTCAGCAAAAGTACTGAAAG
* **
14090781 AAGCTCCCACGTGGACGCGCTTTTGCTACTGTAGCTCCTG
1 AAGCTCCCACGTGGACGTGCTTTTGCTACAATAGCTCCTG
14090821 TTTGGCCTGA
Statistics
Matches: 150, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
125 2 0.01
126 148 0.99
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (126 bp):
AAGCTCCCACGTGGACGTGCTTTTGCTACAATAGCTCCTGAAAAAATAATTTCAAAAAGACGTTT
CTGAGCAAATAGTGTCAAAAACGCTTTAAGCACGATGCTTTGTCAGCAAAAGTACTGAAAG
Found at i:14093434 original size:43 final size:43
Alignment explanation
Indices: 14093316--14093463 Score: 124
Period size: 43 Copynumber: 3.5 Consensus size: 43
14093306 CCGTTACTCG
* * * *
14093316 GTGGAATCAGCACTTAGCATCCAC-CTTATATTC-AGTGATAC
1 GTGGAATCAGCACTTAGCAACCACTTTTACAATCAAGTGATAC
* * * **
14093357 GGGGAATCAGCACATAGCAACCCCTTCCACAATCAAG-GATAC
1 GTGGAATCAGCACTTAGCAACCACTTTTACAATCAAGTGATAC
* * **
14093399 AGTGGAATCAGCACTTAGCAACCACTTTTAGAATCAA-TAATTT
1 -GTGGAATCAGCACTTAGCAACCACTTTTACAATCAAGTGATAC
* *
14093442 GGGGAATCAGTACTTAGCAACC
1 GTGGAATCAGCACTTAGCAACC
14093464 CCTCGAGGAA
Statistics
Matches: 83, Mismatches: 20, Indels: 7
0.75 0.18 0.06
Matches are distributed among these distances:
41 20 0.24
42 29 0.35
43 34 0.41
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (43 bp):
GTGGAATCAGCACTTAGCAACCACTTTTACAATCAAGTGATAC
Found at i:14093530 original size:67 final size:68
Alignment explanation
Indices: 14093402--14093533 Score: 185
Period size: 67 Copynumber: 2.0 Consensus size: 68
14093392 AGGATACAGT
** *
14093402 GGAATCAGCACTTAGCAACCACTTTTAGAATCAATAATTTGGGGAATCAGTACTTAGCAACCCCT
1 GGAATCAGCACTTAGCAACCACTTTTAGAATCAATAATTCAGGGAATCAGCACTTAGCAACCCCT
14093467 CGA
66 CGA
* * * * *
14093470 GGAATCTGCACTTAGCAACCCCTTTTTG-ATCAATGATTCAGGGAATCTGCACTTAGCAACCCCT
1 GGAATCAGCACTTAGCAACCACTTTTAGAATCAATAATTCAGGGAATCAGCACTTAGCAACCCCT
14093534 TACATTCAAT
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
67 31 0.55
68 25 0.45
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (68 bp):
GGAATCAGCACTTAGCAACCACTTTTAGAATCAATAATTCAGGGAATCAGCACTTAGCAACCCCT
CGA
Found at i:14096972 original size:20 final size:22
Alignment explanation
Indices: 14096926--14096988 Score: 62
Period size: 20 Copynumber: 3.0 Consensus size: 22
14096916 CTTTGTCCAA
* *
14096926 CTTCCGGCGGGGGTTGTGGTTG
1 CTTCCGGCGGGGATTCTGGTTG
14096948 C-TCCGGC-GGGATTCTGGTT-
1 CTTCCGGCGGGGATTCTGGTTG
*
14096967 CTTCCGGTAGGGGA-TCTGGTTG
1 CTTCCGG-CGGGGATTCTGGTTG
14096989 TTGGTGTTGG
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
19 1 0.03
20 15 0.44
21 13 0.38
22 5 0.15
ACGTcount: A:0.05, C:0.21, G:0.43, T:0.32
Consensus pattern (22 bp):
CTTCCGGCGGGGATTCTGGTTG
Found at i:14097903 original size:7 final size:7
Alignment explanation
Indices: 14097893--14097918 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
14097883 CATAATACAT
14097893 AATACTA
1 AATACTA
14097900 AATACTA
1 AATACTA
14097907 AATACTA
1 AATACTA
14097914 AATAC
1 AATAC
14097919 CAATCGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:14099098 original size:11 final size:11
Alignment explanation
Indices: 14099082--14099107 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
14099072 GCTTTTTTTA
14099082 AGAGGAATTTG
1 AGAGGAATTTG
14099093 AGAGGAATTTG
1 AGAGGAATTTG
14099104 AGAG
1 AGAG
14099108 AATATTGGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.38, T:0.23
Consensus pattern (11 bp):
AGAGGAATTTG
Found at i:14100175 original size:111 final size:111
Alignment explanation
Indices: 14099929--14100172 Score: 384
Period size: 112 Copynumber: 2.2 Consensus size: 111
14099919 GGCACCAGAG
* *
14099929 TACGAAAAAAAGTAAAAAAAAATTTTTTTTGAGTGCTAGCTTGTCAATGGTCGGCACCCAGTACA
1 TACG-AAAAAAGTAAAAAAAAATTTTTTTTGAGTGCTAGCCTGTCAATGGCCGGCACCCAGTACA
*
14099994 GTAAAATTTTTTTTTTAGTTTTTTTCGTGTCATTATCAGGTATCAGTA
65 GTAAAATTTTTTTTTTACTTTTTTTCGTGTCA-TATCAGGTATCAGTA
* * * *
14100042 TACGAAAAAGGTAAAAAAAAATTTTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTATAG
1 TACGAAAAAAGTAAAAAAAAATTTTTTTTGAGTGCTAGCCTGTCAATGGCCGGCACCCAGTACAG
14100107 T-AAATTTTTTTTTTACTTTTTTTCGTGTCA-ATGCAGGTATCAGTA
66 TAAAATTTTTTTTTTACTTTTTTTCGTGTCATAT-CAGGTATCAGTA
14100152 TACGAAAAAAGTAAAAAAAAA
1 TACGAAAAAAGTAAAAAAAAA
14100173 ATTACTGTAT
Statistics
Matches: 122, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
109 2 0.02
110 32 0.26
111 28 0.23
112 56 0.46
113 4 0.03
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.36
Consensus pattern (111 bp):
TACGAAAAAAGTAAAAAAAAATTTTTTTTGAGTGCTAGCCTGTCAATGGCCGGCACCCAGTACAG
TAAAATTTTTTTTTTACTTTTTTTCGTGTCATATCAGGTATCAGTA
Found at i:14100222 original size:110 final size:109
Alignment explanation
Indices: 14099929--14100242 Score: 300
Period size: 112 Copynumber: 2.8 Consensus size: 109
14099919 GGCACCAGAG
* * * * * * * *
14099929 TACGAAAAAAAGTAAAAAAAAATTTTTTTTGAGTGCTAGCTTGTCAATGGTCGGCACCCAG-TAC
1 TACG-AAAAAAGTAAAAAAAAATTTGTATTGGGTGCTAGCCTGACAATGGCCAGAACCCAGATA-
*
14099993 AGTAAAATTTTTTTTTTAGTTTTTTTCGTGTCATTATCAGGTATCAGTA
64 A--AAAATTTTTTTTTTACTTTTTTTCGTGTCA-TATCAGGTATCAGTA
* * * * * * * *
14100042 TACGAAAAAGGTAAAAAAAAATTTTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTATAG
1 TACGAAAAAAGTAAAAAAAAATTTGTATTGGGTGCTAGCCTGACAATGGCCAGAACCCAG-ATAA
*
14100107 TAAATTTTTTTTTTACTTTTTTTCGTGTCA-ATGCAGGTATCAGTA
65 AAAATTTTTTTTTTACTTTTTTTCGTGTCATAT-CAGGTATCAGTA
14100152 TACGAAAAAAGTAAAAAAAAAATTACTGTATTGGGTG-TCAGCCATTGAC-A-GGCCAGAACCCA
1 TACGAAAAAAGT-AAAAAAAAATT--TGTATTGGGTGCT-AGCC--TGACAATGGCCAGAACCCA
14100214 -A-AAAAAATTTTTTTTTTACTTTTTTTCGT
60 GATAAAAAATTTTTTTTTTACTTTTTTTCGT
14100243 ACTCTGGTGC
Statistics
Matches: 175, Mismatches: 17, Indels: 21
0.82 0.08 0.10
Matches are distributed among these distances:
109 2 0.01
110 49 0.28
111 40 0.23
112 52 0.30
113 26 0.15
114 3 0.02
115 3 0.02
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (109 bp):
TACGAAAAAAGTAAAAAAAAATTTGTATTGGGTGCTAGCCTGACAATGGCCAGAACCCAGATAAA
AAATTTTTTTTTTACTTTTTTTCGTGTCATATCAGGTATCAGTA
Found at i:14100288 original size:110 final size:107
Alignment explanation
Indices: 14100174--14100377 Score: 309
Period size: 110 Copynumber: 1.9 Consensus size: 107
14100164 AAAAAAAAAA
* *
14100174 TTACTGTATTGGGTGTCAGCCATTGACAGGCCAGAACCCAAAAAAAATTTTTTTTTTACTTTTTT
1 TTACTGTACTGGGTGCCAGCCATTGACAGGCCAGAACCC--AAAAAATTTTTTTTTTACTTTTTT
*
14100239 TCGTACTCTGGTGCCGGCCATTAACAGACCAAAACTCGAATTTTT
64 TCGTACT-GGGTGCCGGCCATTAACAGACCAAAACTCGAATTTTT
* * * *
14100284 TTACTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATATTTTTTTTTTCCTTTTTTTC
1 TTACTGTACTGGGTGCCAGCCATTGACAGGCCAGAACCCAAAAAATTTTTTTTTTACTTTTTTTC
*
14100349 GTACTGGGTGCCGGCCATTGACAGACCAA
66 GTACTGGGTGCCGGCCATTAACAGACCAA
14100378 CACCCAAAAA
Statistics
Matches: 86, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
107 22 0.26
108 29 0.34
110 35 0.41
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (107 bp):
TTACTGTACTGGGTGCCAGCCATTGACAGGCCAGAACCCAAAAAATTTTTTTTTTACTTTTTTTC
GTACTGGGTGCCGGCCATTAACAGACCAAAACTCGAATTTTT
Found at i:14100405 original size:60 final size:61
Alignment explanation
Indices: 14100279--14100405 Score: 159
Period size: 60 Copynumber: 2.1 Consensus size: 61
14100269 AAAACTCGAA
* * * *** **
14100279 TTTTTTTACTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAATATTTTTTTTTTCC
1 TTTTTTTACTGTACTGGGTGCCGGCCATTGACAGACCAACACCCAAAAAAAAATTTCCTT-C
14100341 TTTTTTT-C-GTACTGGGTGCCGGCCATTGACAGACCAACACCCAAAAAAAAATTTCCTTC
1 TTTTTTTACTGTACTGGGTGCCGGCCATTGACAGACCAACACCCAAAAAAAAATTTCCTTC
14100400 TTTTTT
1 TTTTTT
14100406 GTATATCAGT
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
59 7 0.12
60 42 0.74
61 1 0.02
62 7 0.12
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (61 bp):
TTTTTTTACTGTACTGGGTGCCGGCCATTGACAGACCAACACCCAAAAAAAAATTTCCTTC
Found at i:14100963 original size:26 final size:26
Alignment explanation
Indices: 14100912--14100965 Score: 83
Period size: 25 Copynumber: 2.1 Consensus size: 26
14100902 TTAAAAATAA
14100912 TTAAATAGTATTTAAAAATTTTAATT
1 TTAAATAGTATTTAAAAATTTTAATT
* *
14100938 TTAAATAG-ATTTAAAATTTTTAAAT
1 TTAAATAGTATTTAAAAATTTTAATT
14100963 TTA
1 TTA
14100966 GAAATAATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 18 0.69
26 8 0.31
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (26 bp):
TTAAATAGTATTTAAAAATTTTAATT
Found at i:14103228 original size:30 final size:31
Alignment explanation
Indices: 14103197--14103257 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
14103187 GTAAATGTAA
*
14103197 TTCAAAAGTATA-GGGACTAAAATTGATTAAT
1 TTCAAAAGTACATGGG-CTAAAATTGATTAAT
* *
14103228 TTGAAGAGTACATGGGCTAAAATTGATTAA
1 TTCAAAAGTACATGGGCTAAAATTGATTAA
14103258 ATTATAGTAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 23 0.88
32 3 0.12
ACGTcount: A:0.43, C:0.07, G:0.20, T:0.31
Consensus pattern (31 bp):
TTCAAAAGTACATGGGCTAAAATTGATTAAT
Found at i:14103276 original size:29 final size:30
Alignment explanation
Indices: 14103210--14103277 Score: 93
Period size: 31 Copynumber: 2.3 Consensus size: 30
14103200 AAAAGTATAG
*
14103210 GGACTAAAATTGATTAATTTGAAGAGTACAT
1 GGACTAAAATTGATTAAATT-AAGAGTACAT
* *
14103241 GGGCTAAAATTGATTAAATT-ATAGTACAT
1 GGACTAAAATTGATTAAATTAAGAGTACAT
14103270 GGACTAAA
1 GGACTAAA
14103278 TCTACAACTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 15 0.45
31 18 0.55
ACGTcount: A:0.43, C:0.07, G:0.19, T:0.31
Consensus pattern (30 bp):
GGACTAAAATTGATTAAATTAAGAGTACAT
Found at i:14125798 original size:27 final size:27
Alignment explanation
Indices: 14125768--14125972 Score: 216
Period size: 27 Copynumber: 7.6 Consensus size: 27
14125758 ATATTGAGCC
* * * *
14125768 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAATT
* * *
14125795 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAATT
*
14125822 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AATT
** *
14125850 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAATT
* *
14125877 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAATT
* *
14125904 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAATT
* *
14125931 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAATT
14125958 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
14125973 GTACAATTTA
Statistics
Matches: 156, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
27 132 0.85
28 24 0.15
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAATT
Found at i:14134068 original size:23 final size:23
Alignment explanation
Indices: 14134041--14134086 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
14134031 TCAATGATTC
14134041 AACATCAAGGTTCAACAGTCTTA
1 AACATCAAGGTTCAACAGTCTTA
14134064 AACATCAAGGTTCAACAGTCTTA
1 AACATCAAGGTTCAACAGTCTTA
14134087 CTCAATTAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.22, G:0.13, T:0.26
Consensus pattern (23 bp):
AACATCAAGGTTCAACAGTCTTA
Found at i:14134869 original size:226 final size:226
Alignment explanation
Indices: 14134436--14135092 Score: 933
Period size: 226 Copynumber: 2.9 Consensus size: 226
14134426 ATTAGTGGTG
* ** * *
14134436 TTTTGGAGAAAGCGCCGCAAAAAACCTAAGCCCAACGAGGTTGTTTCCCGAGCTTTCGGGGATTT
1 TTTTGG-GAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTT
* * * *
14134501 AGCGGCGTTTCTGAGAAAGCGCCGCCAATGCTCAGGGCTTTAGCGTCATTTTTG-GAAAAGCGCC
65 AGCGGCGTTTCTAAGAAAGCGCCG-TAATGCTCAGGGCTTTAGCGGCGTTTTTGAG-AAAGCGCC
* * * * * *
14134565 GCAAAAAAAACTAAGCCTAACGACGCCGTTTTCTAAGCTTTCGGGGATTTAGCAGCATTTTT-AA
128 GCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGTTTTTGGA
* * *
14134629 GAAAGCGTCGCTAATGCTCAGGGCTTTAGCGGCGT
193 -AAAGCGCCGCTAATGCCCAAGGCTTTAGCGGCGT
*
14134664 TTTTGGGAAAGCACCGC-AAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTA
1 TTTTGGGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTA
*
14134728 GCGGCGTTTCTAAGAAAGCGCCGTGAACGCTCAGGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGC
66 GCGGCGTTTCTAAGAAAGCGCCGT-AATGCTCAGGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGC
*
14134793 AAAAAAACCTAAGCCCAACGACGTCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGTTTTTGGAAA
130 AAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGTTTTTGGAAA
14134858 AGCGCCGCTAATGCCCAAGGCTTTAGCGGCGT
195 AGCGCCGCTAATGCCCAAGGCTTTAGCGGCGT
* *
14134890 TTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTTTCGGGGATTT
1 TTTTGGGAAAGCGCCGC-AAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTT
* * * * * * * *
14134955 TGTGGCGTTTTTAAGAAAGCGCCGCTAATGTTTAGGGCTTTAGCAGCGTTTTTGAGGAAGCGCCA
65 AGCGGCGTTTCTAAGAAAGCGCCG-TAATGCTCAGGGCTTTAGCGGCGTTTTTGAGAAAGCGCCG
* *
14135020 CAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCTTTCGGGGATTTAGCGACGTTTTTGGAA
129 CAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGTTTTTGGAA
14135085 AAGCGCCG
194 AAGCGCCG
14135093 TTAAAAATAT
Statistics
Matches: 387, Mismatches: 36, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
226 199 0.51
227 12 0.03
228 175 0.45
229 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (226 bp):
TTTTGGGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTA
GCGGCGTTTCTAAGAAAGCGCCGTAATGCTCAGGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCA
AAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGTTTTTGGAAAA
GCGCCGCTAATGCCCAAGGCTTTAGCGGCGT
Found at i:14135092 original size:114 final size:114
Alignment explanation
Indices: 14134435--14135080 Score: 908
Period size: 114 Copynumber: 5.7 Consensus size: 114
14134425 CATTAGTGGT
* * ** * *
14134435 GTTTTGGAGAAAGCGCCGC-AAAAAACCTAAGCCCAACGAGGTTGTTTCCCGAGCTTTCGGGGAT
1 GTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGAT
* * * *
14134499 TTAGCGGCGTTTCTGAGAAAGCGCCGCCAATGCTCAGGGCTTTAGCGTC
66 TTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGC
* * * *
14134548 ATTTTTG-GAAAAGCGCCGCAAAAAAAACTAAGCCTAACGACGCCGTTTTCTAAGCTTTCGGGGA
1 GTTTTTGAG-AAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGA
* * *
14134612 TTTAGCAGCATTTTTAAGAAAGCGTCGCTAATGCTCAGGGCTTTAGCGGC
65 TTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGC
* *
14134662 GTTTTTGGGAAAGCACCGC--AAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGAT
1 GTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGAT
* *
14134725 TTAGCGGCGTTTCTAAGAAAGCGCCG-TGAACGCTCAGGGCTTTAGCGGC
66 TTAGCGGCGTTTTTAAGAAAGCGCCGCT-AATGCTCAGGGCTTTAGCGGC
*
14134774 GTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGTCGTTTTCTGAGCTTTCGGGGAT
1 GTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGAT
* * *
14134839 TTAGCGGCGTTTTT-GGAAAAGCGCCGCTAATGCCCAAGGCTTTAGCGGC
66 TTAGCGGCGTTTTTAAG-AAAGCGCCGCTAATGCTCAGGGCTTTAGCGGC
*
14134888 GTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTTTCGGGGAT
1 GTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGAT
* * * * *
14134953 TTTGTGGCGTTTTTAAGAAAGCGCCGCTAATGTTTAGGGCTTTAGCAGC
66 TTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGC
* * *
14135002 GTTTTTGAGGAAGCGCCACAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGAGCTTTCGGGGAT
1 GTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGAT
*
14135067 TTAGCGACGTTTTT
66 TTAGCGGCGTTTTT
14135081 GGAAAAGCGC
Statistics
Matches: 472, Mismatches: 52, Indels: 17
0.87 0.10 0.03
Matches are distributed among these distances:
111 1 0.00
112 101 0.21
113 16 0.03
114 351 0.74
115 3 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (114 bp):
GTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGAT
TTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGC
Found at i:14135352 original size:15 final size:15
Alignment explanation
Indices: 14135334--14135372 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
14135324 TCATATTTTA
14135334 AGGTTTAGGGAGTAT
1 AGGTTTAGGGAGTAT
*
14135349 AGGTTTAGGGATTAT
1 AGGTTTAGGGAGTAT
*
14135364 -GGATTAGGG
1 AGGTTTAGGG
14135373 GTTTGGATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 8 0.36
15 14 0.64
ACGTcount: A:0.26, C:0.00, G:0.41, T:0.33
Consensus pattern (15 bp):
AGGTTTAGGGAGTAT
Found at i:14135672 original size:21 final size:22
Alignment explanation
Indices: 14135635--14135687 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
14135625 AGATTATGAA
*
14135635 TTAGGGA-TTATGGTTTAAGGG
1 TTAGGGATTTAAGGTTTAAGGG
*
14135656 TT-GGGATTTAAGGTTTAGGGG
1 TTAGGGATTTAAGGTTTAAGGG
*
14135677 TTAGGGGTTTA
1 TTAGGGATTTA
14135688 GGGATTAGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 4 0.15
21 16 0.59
22 7 0.26
ACGTcount: A:0.21, C:0.00, G:0.40, T:0.40
Consensus pattern (22 bp):
TTAGGGATTTAAGGTTTAAGGG
Found at i:14135704 original size:14 final size:14
Alignment explanation
Indices: 14135685--14135736 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 14
14135675 GGTTAGGGGT
14135685 TTAGGGATT-AGATG
1 TTAGGGATTAAGA-G
*
14135699 TTAGGGGTTAAGAG
1 TTAGGGATTAAGAG
14135713 TTAGGGATTTAAG-G
1 TTAGGGA-TTAAGAG
14135727 TTTAGGGATT
1 -TTAGGGATT
14135737 CAGGGGTCGA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
14 18 0.55
15 15 0.45
ACGTcount: A:0.27, C:0.00, G:0.37, T:0.37
Consensus pattern (14 bp):
TTAGGGATTAAGAG
Found at i:14135734 original size:15 final size:15
Alignment explanation
Indices: 14135648--14135736 Score: 64
Period size: 15 Copynumber: 6.1 Consensus size: 15
14135638 GGGATTATGG
*
14135648 TTTAAGGGTT-GGGA
1 TTTAAGGTTTAGGGA
14135662 TTTAAGGTTTAGGG-
1 TTTAAGGTTTAGGGA
* *
14135676 GTTAGGGGTTTAGGGA
1 TTTA-AGGTTTAGGGA
*
14135692 -TT-AGATGTTAGGG-
1 TTTAAGGT-TTAGGGA
*
14135705 GTTAAGAG-TTAGGGA
1 TTTAAG-GTTTAGGGA
14135720 TTTAAGGTTTAGGGA
1 TTTAAGGTTTAGGGA
14135735 TT
1 TT
14135737 CAGGGGTCGA
Statistics
Matches: 59, Mismatches: 7, Indels: 17
0.71 0.08 0.20
Matches are distributed among these distances:
13 2 0.03
14 27 0.46
15 30 0.51
ACGTcount: A:0.24, C:0.00, G:0.39, T:0.37
Consensus pattern (15 bp):
TTTAAGGTTTAGGGA
Found at i:14136728 original size:137 final size:138
Alignment explanation
Indices: 14136366--14136754 Score: 516
Period size: 137 Copynumber: 2.8 Consensus size: 138
14136356 TTCAAAATGA
*
14136366 AATAGCGGCGTTTTTTAAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAACAAAATACAAA
1 AATAGCGGC-TTTTTTAAAAAACGCCGCAAAAAATAAATCAATTTAT-AAAAAACAAAATAAAAA
*
14136431 ATTTTTAGAATAGGAAAACGGCGTTGTTTTGTTCAAAATGAAAAAATTTTTGCGGCATAAAAACG
64 ATTTTTAGAATAGCAAAACGGCGTTGTTTTGTTCAAAATGAAAAAATTTTTGCGG-----AAACG
14136496 CCGCTAAAGGTAAGC
124 CCGCTAAAGGTAAGC
14136511 AATAGCGG-TGTTTTTAAAAACACGCCGCAAAAAATAAATCAATTTATAAAAAACAAAATAAAAA
1 AATAGCGGCT-TTTTTAAAAA-ACGCCGCAAAAAATAAATCAATTTATAAAAAACAAAATAAAAA
* * *
14136575 AATTTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAA-TTTTGC-G-AATGCCGCT
64 ATTTTTAGAATAGCAAAACGGCGTTGTTTTGTTCAAAATGAAAAAATTTTTGCGGAAACGCCGCT
14136637 AAAGGTAAGC
129 AAAGGTAAGC
* * * * *
14136647 AATTGCGGCATTTTTTATAGAAACGCTGCAAAAAGTAAATCAATTTATAAAAAATAAAATAAAAA
1 AATAGCGGC-TTTTTTA-AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAACAAAATAAAAA
* ** * *
14136712 ATTTTTAGCATAGCAAAATAGTGTTATTTTGTTCAAAATGAAA
64 ATTTTTAGAATAGCAAAACGGCGTTGTTTTGTTCAAAATGAAA
14136755 TAGCGGCGTT
Statistics
Matches: 222, Mismatches: 17, Indels: 18
0.86 0.07 0.07
Matches are distributed among these distances:
136 25 0.11
137 82 0.37
138 4 0.02
142 1 0.00
143 7 0.03
144 69 0.31
145 34 0.15
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.27
Consensus pattern (138 bp):
AATAGCGGCTTTTTTAAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAACAAAATAAAAAAT
TTTTAGAATAGCAAAACGGCGTTGTTTTGTTCAAAATGAAAAAATTTTTGCGGAAACGCCGCTAA
AGGTAAGC
Found at i:14139301 original size:15 final size:17
Alignment explanation
Indices: 14139267--14139304 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
14139257 TAATTTATTT
14139267 ATTTTTATTATTTTAGA
1 ATTTTTATTATTTTAGA
*
14139284 ATTTTTA-TA-TTTATA
1 ATTTTTATTATTTTAGA
14139299 ATTTTT
1 ATTTTT
14139305 TTCCTTATCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 11 0.55
16 2 0.10
17 7 0.35
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (17 bp):
ATTTTTATTATTTTAGA
Found at i:14142261 original size:43 final size:43
Alignment explanation
Indices: 14142134--14142360 Score: 280
Period size: 43 Copynumber: 5.3 Consensus size: 43
14142124 ATAATATGTT
* * * * *
14142134 TTTAGCGGCGTTTTTGCGAGAAGCGTCGCTAAAGGT--TGTTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGGTC
* * *
14142175 TATAGCGGCGTTTGTGATAAAAAGCGCCACTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGA-GAAAAGCGCCGCTAAAGGTCATGGTC
*
14142219 TTTAGCGGCGTTTGTGAGAAAATCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGGTC
* * *
14142262 TATAGTGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGGTC
* *
14142305 TTTAGCGGTGTTTATG-GAAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGAG-AAAAGCGCCGCTAAAGGTCATGGTC
*
14142348 GTTAGCGGCGTTT
1 TTTAGCGGCGTTT
14142361 ATTTTCAAAA
Statistics
Matches: 159, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
41 14 0.09
42 15 0.09
43 110 0.69
44 20 0.13
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGGTC
Found at i:14142307 original size:86 final size:86
Alignment explanation
Indices: 14142134--14142360 Score: 309
Period size: 86 Copynumber: 2.6 Consensus size: 86
14142124 ATAATATGTT
* * * *
14142134 TTTAGCGGCGTTTTTGCGAGAAGCGTCGCTAAAGGT--TGTTCTATAGCGGCGTTTGTGATAAAA
1 TTTAGCGGCGTTTATG-GAAAAGCGCCGCTAAAGGTCATGGTCTATAGCGGCGTTTGTGATAAAA
14142197 AGCGCCACTAAAGGTCATGGTC
65 AGCGCCACTAAAGGTCATGGTC
* * *
14142219 TTTAGCGGCGTTTGTGAGAAAATCGCCGCTAAAGGTCATGGTCTATAGTGGCGTTTGTGA-AAAA
1 TTTAGCGGCGTTTATG-GAAAAGCGCCGCTAAAGGTCATGGTCTATAGCGGCGTTTGTGATAAAA
*
14142283 AGCGCCGCTAAAGGTCATGGTC
65 AGCGCCACTAAAGGTCATGGTC
*
14142305 TTTAGCGGTGTTTATGGAAAAAGCGCCGCTAAAGGTCATGGTCGT-TAGCGGCGTTT
1 TTTAGCGGCGTTTATGG-AAAAGCGCCGCTAAAGGTCATGGTC-TATAGCGGCGTTT
14142361 ATTTTCAAAA
Statistics
Matches: 126, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
85 32 0.25
86 73 0.58
87 21 0.17
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (86 bp):
TTTAGCGGCGTTTATGGAAAAGCGCCGCTAAAGGTCATGGTCTATAGCGGCGTTTGTGATAAAAA
GCGCCACTAAAGGTCATGGTC
Found at i:14149181 original size:33 final size:33
Alignment explanation
Indices: 14149139--14149215 Score: 91
Period size: 33 Copynumber: 2.3 Consensus size: 33
14149129 TACACTTTGT
** *
14149139 TTGGTGTGTTGGTTAGATTAGCTCTTATGAGCA
1 TTGGTGTGTTGGAGAGATTAGCTCGTATGAGCA
* *
14149172 TTGGTGTGTTGGAGGGATTAGCTCGTGTGAGCA
1 TTGGTGTGTTGGAGAGATTAGCTCGTATGAGCA
*
14149205 TCTTGTGTGTT
1 T-TGGTGTGTT
14149216 TGATTGGACT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
33 29 0.78
34 8 0.22
ACGTcount: A:0.14, C:0.09, G:0.35, T:0.42
Consensus pattern (33 bp):
TTGGTGTGTTGGAGAGATTAGCTCGTATGAGCA
Found at i:14154357 original size:20 final size:20
Alignment explanation
Indices: 14154332--14154371 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
14154322 TGTAAAATGA
14154332 TTTCTGGAAAATGCTTTACT
1 TTTCTGGAAAATGCTTTACT
* *
14154352 TTTCTGTAAAATGTTTTACT
1 TTTCTGGAAAATGCTTTACT
14154372 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGCTTTACT
Found at i:14155397 original size:28 final size:28
Alignment explanation
Indices: 14155355--14155411 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
14155345 TCTCTAGCAT
*
14155355 CAAATACTAAAAGATCATTAAGTGCTAA
1 CAAATACTAAAAGATCAGTAAGTGCTAA
*
14155383 CAAATACTAACAGATCAGTAAGTGCTAA
1 CAAATACTAAAAGATCAGTAAGTGCTAA
14155411 C
1 C
14155412 CAGAGAAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.47, C:0.18, G:0.12, T:0.23
Consensus pattern (28 bp):
CAAATACTAAAAGATCAGTAAGTGCTAA
Found at i:14159066 original size:21 final size:21
Alignment explanation
Indices: 14159024--14159067 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
14159014 ATTAAAAGTT
*
14159024 AAATTAAAAATAAAATTACTA
1 AAATTAAAAATAAAATGACTA
*
14159045 AAATT-AAAATAAAAATGCCTA
1 AAATTAAAAAT-AAAATGACTA
14159066 AA
1 AA
14159068 TTAGTAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.66, C:0.07, G:0.02, T:0.25
Consensus pattern (21 bp):
AAATTAAAAATAAAATGACTA
Found at i:14163105 original size:20 final size:20
Alignment explanation
Indices: 14163080--14163119 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
14163070 AAAACTTAAA
*
14163080 CTTGTTGATAAAACTCGTTT
1 CTTGTTGATAAAACTAGTTT
14163100 CTTGTTGATAAAACTAGTTT
1 CTTGTTGATAAAACTAGTTT
14163120 TTTAAGTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (20 bp):
CTTGTTGATAAAACTAGTTT
Found at i:14163824 original size:26 final size:26
Alignment explanation
Indices: 14163776--14163844 Score: 75
Period size: 26 Copynumber: 2.7 Consensus size: 26
14163766 ATCGTAGCAG
* * *
14163776 AGCTGCCACTAATAATGACGCAACAA
1 AGCTGCCAGTAATAGTAACGCAACAA
* *
14163802 AGCTGCCAGTAATAGTAATGCAACAG
1 AGCTGCCAGTAATAGTAACGCAACAA
* *
14163828 GGCTGCCAGTAACAGTA
1 AGCTGCCAGTAATAGTA
14163845 TATGTGGCAA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17
Consensus pattern (26 bp):
AGCTGCCAGTAATAGTAACGCAACAA
Found at i:14164052 original size:27 final size:27
Alignment explanation
Indices: 14164022--14164299 Score: 298
Period size: 27 Copynumber: 10.3 Consensus size: 27
14164012 TATAAAAGTT
*
14164022 ATTTTACCCTTCAAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
14164049 ATTTTACCCTTC-AGGGGTATTTTGGTA
1 ATTTTACCCTTCGA-GGGTATTTCGATA
*
14164076 ATTTTACCCTTCGAGGGTATATCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
14164103 ATTTTACCCTTCGAGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* * * *
14164130 ATTTTTCCATTCGGGGGAATTTC-AGTA
1 ATTTTACCCTTCGAGGGTATTTCGA-TA
* *
14164157 ATTTTACCCTTTGAGGGTATTT-TAGTA
1 ATTTTACCCTTCGAGGGTATTTCGA-TA
* * * *
14164184 ATTATACCCTTCGAAGGTATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
14164211 ATTTTACCCTTCGAGGTTATTTCTG-TA
1 ATTTTACCCTTCGAGGGTATTTC-GATA
14164238 ATTTTACCCTTCGAGGGTATTTC-AGTA
1 ATTTTACCCTTCGAGGGTATTTCGA-TA
* *
14164265 ATTTTACCTTTCGAGGGTATTT-TAGTA
1 ATTTTACCCTTCGAGGGTATTTCGA-TA
14164292 ATTTTACC
1 ATTTTACC
14164300 ATGATTCGCT
Statistics
Matches: 214, Mismatches: 28, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
26 1 0.00
27 211 0.99
28 2 0.01
ACGTcount: A:0.22, C:0.16, G:0.18, T:0.43
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGATA
Found at i:14164093 original size:54 final size:54
Alignment explanation
Indices: 14164022--14164299 Score: 348
Period size: 54 Copynumber: 5.1 Consensus size: 54
14164012 TATAAAAGTT
* *
14164022 ATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTC-AGGGGTATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCTTCGA-GGGTATTTTAGTA
* **
14164076 ATTTTACCCTTCGAGGGTATATCGATAATTTTACCCTTCGAGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTTAGTA
* * * * *
14164130 ATTTTTCCATTCGGGGGAATTTC-AGTAATTTTACCCTTTGAGGGTATTTTAGTA
1 ATTTTACCCTTCGAGGGTATTTCGA-TAATTTTACCCTTCGAGGGTATTTTAGTA
* * * * *
14164184 ATTATACCCTTCGAAGGTATTTTGGTAATTTTACCCTTCGAGGTTATTTCT-GTA
1 ATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTT-TAGTA
*
14164238 ATTTTACCCTTCGAGGGTATTTC-AGTAATTTTACCTTTCGAGGGTATTTTAGTA
1 ATTTTACCCTTCGAGGGTATTTCGA-TAATTTTACCCTTCGAGGGTATTTTAGTA
14164292 ATTTTACC
1 ATTTTACC
14164300 ATGATTCGCT
Statistics
Matches: 191, Mismatches: 27, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
53 2 0.01
54 187 0.98
55 2 0.01
ACGTcount: A:0.22, C:0.16, G:0.18, T:0.43
Consensus pattern (54 bp):
ATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTTAGTA
Found at i:14164158 original size:81 final size:80
Alignment explanation
Indices: 14164022--14164301 Score: 337
Period size: 81 Copynumber: 3.5 Consensus size: 80
14164012 TATAAAAGTT
* * * * **
14164022 ATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTCAGGGGTATTTTGGTAATTTTACCCTT
1 ATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCATTCGGGGGTATTTCAGTAATTTTACCCTT
14164087 CGAGGGTATATC-GATA
66 CGAGGGTAT-TCAG-TA
* *
14164103 ATTTTACCCTTCGAGGGTATTTCGGTAATTTTTCCATTCGGGGGAATTTCAGTAATTTTACCCTT
1 ATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCATTCGGGGGTATTTCAGTAATTTTACCCTT
* *
14164168 TGAGGGTATTTTAGTA
66 CGAGGGTA-TTCAGTA
* * * * * * *
14164184 ATTATACCCTTCGAAGGTATTTTGGTAATTTTACCCTTCGAGGTTATTTCTGTAATTTTACCCTT
1 ATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCATTCGGGGGTATTTCAGTAATTTTACCCTT
14164249 CGAGGGTATTTCAGTA
66 CGAGGGTA-TTCAGTA
* **
14164265 ATTTTACCTTTCGAGGGTATTTTAGTAATTTTACCAT
1 ATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCAT
14164302 GATTCGCTAG
Statistics
Matches: 171, Mismatches: 26, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
81 169 0.99
82 2 0.01
ACGTcount: A:0.23, C:0.16, G:0.18, T:0.43
Consensus pattern (80 bp):
ATTTTACCCTTCGAGGGTATTTCGGTAATTTTACCATTCGGGGGTATTTCAGTAATTTTACCCTT
CGAGGGTATTCAGTA
Found at i:14165248 original size:17 final size:19
Alignment explanation
Indices: 14165212--14165251 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
14165202 AATCAGTAAC
*
14165212 AAGAGAAGAAGAAATCGAA
1 AAGAGAAGAAGAAATAGAA
14165231 AAGA-AAGAAGAAA-AGAA
1 AAGAGAAGAAGAAATAGAA
14165248 AAGA
1 AAGA
14165252 TGAGGGAGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 7 0.35
18 9 0.45
19 4 0.20
ACGTcount: A:0.70, C:0.03, G:0.25, T:0.03
Consensus pattern (19 bp):
AAGAGAAGAAGAAATAGAA
Found at i:14170982 original size:20 final size:20
Alignment explanation
Indices: 14170953--14170991 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14170943 CTTAGACTTT
14170953 TTGATAAAACTCATTTCTTG
1 TTGATAAAACTCATTTCTTG
* *
14170973 TTGATCAAACTCGTTTCTT
1 TTGATAAAACTCATTTCTT
14170992 AAGTTTGGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.18, G:0.10, T:0.46
Consensus pattern (20 bp):
TTGATAAAACTCATTTCTTG
Found at i:14171837 original size:27 final size:27
Alignment explanation
Indices: 14171807--14171976 Score: 191
Period size: 27 Copynumber: 6.3 Consensus size: 27
14171797 TATAAAAGTT
*
14171807 ATTTTACCCTTCAAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
14171834 ATTTTACCTTTC-AGGTGTATTTC-AGTA
1 ATTTTACCCTTCGAGG-GTATTTCGA-TA
* * *
14171861 ATTTTACCCTTTGAGGTTATTTCAATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
14171888 ATTTTACCCTTTGAGGATATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* * *
14171915 ATTTTACCCTTCGGGGGTATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* * *
14171942 ATTTTACCTTTCGAAGGTATTTCAATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
14171969 ATTTTACC
1 ATTTTACC
14171977 ATGATTCGCA
Statistics
Matches: 122, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
26 4 0.03
27 114 0.93
28 4 0.03
ACGTcount: A:0.24, C:0.16, G:0.15, T:0.45
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGATA
Found at i:14171943 original size:81 final size:81
Alignment explanation
Indices: 14171807--14171976 Score: 236
Period size: 81 Copynumber: 2.1 Consensus size: 81
14171797 TATAAAAGTT
* * *
14171807 ATTTTACCCTTCAAGGGTATTTCGATAATTTTACCTTTCAGGTGTATTTCAGTAATTTTACCCTT
1 ATTTTACCCTTCAAGGATATTTCGATAATTTTACCCTTCAGGGGTATTTCAGTAATTTTA-CCTT
14171872 T-G-AGGTTATTTCAATA
65 TCGAAGG-TATTTCAATA
** * **
14171888 ATTTTACCCTTTGAGGATATTTCGATAATTTTACCCTTCGGGGGTATTTTGGTAATTTTACCTTT
1 ATTTTACCCTTCAAGGATATTTCGATAATTTTACCCTTCAGGGGTATTTCAGTAATTTTACCTTT
14171953 CGAAGGTATTTCAATA
66 CGAAGGTATTTCAATA
14171969 ATTTTACC
1 ATTTTACC
14171977 ATGATTCGCA
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
80 5 0.06
81 71 0.90
82 3 0.04
ACGTcount: A:0.24, C:0.16, G:0.15, T:0.45
Consensus pattern (81 bp):
ATTTTACCCTTCAAGGATATTTCGATAATTTTACCCTTCAGGGGTATTTCAGTAATTTTACCTTT
CGAAGGTATTTCAATA
Found at i:14172780 original size:26 final size:26
Alignment explanation
Indices: 14172751--14172800 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
14172741 ATATGTCTCG
*
14172751 ATCAAAAAGAATAAAAGAAGGTTTAA
1 ATCAAAAACAATAAAAGAAGGTTTAA
* *
14172777 ATCACAAACAGTAAAAGAAGGTTT
1 ATCAAAAACAATAAAAGAAGGTTT
14172801 TCCAGTCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.56, C:0.08, G:0.16, T:0.20
Consensus pattern (26 bp):
ATCAAAAACAATAAAAGAAGGTTTAA
Found at i:14173694 original size:31 final size:29
Alignment explanation
Indices: 14173656--14173721 Score: 96
Period size: 31 Copynumber: 2.2 Consensus size: 29
14173646 ACAAACACAT
* *
14173656 ACACACACAAACTTTAATGCACAATTCATTC
1 ACACACACAAAATTAAATGCACAATTCA--C
14173687 ACACACACAAAATTAAATGCACAATTCAC
1 ACACACACAAAATTAAATGCACAATTCAC
14173716 ACACAC
1 ACACAC
14173722 TTATCACGTC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 7 0.21
31 26 0.79
ACGTcount: A:0.47, C:0.30, G:0.03, T:0.20
Consensus pattern (29 bp):
ACACACACAAAATTAAATGCACAATTCAC
Found at i:14180302 original size:24 final size:24
Alignment explanation
Indices: 14180272--14180330 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
14180262 GCTATCCGGT
*
14180272 GCTACCCGTTAATTGCTCTTCAGA
1 GCTACCCGTTAATTACTCTTCAGA
* *
14180296 GCTACCCGTTCATTACTCTTCGGA
1 GCTACCCGTTAATTACTCTTCAGA
14180320 GCTACCCGTTA
1 GCTACCCGTTA
14180331 TAGGCTCTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.19, C:0.32, G:0.17, T:0.32
Consensus pattern (24 bp):
GCTACCCGTTAATTACTCTTCAGA
Found at i:14180338 original size:24 final size:25
Alignment explanation
Indices: 14180251--14180339 Score: 87
Period size: 24 Copynumber: 3.7 Consensus size: 25
14180241 ACTTGAATTT
* * *
14180251 CCCGTTATATGGCTATCCGGTGCTA
1 CCCGTTATATGGCTCTTCGGAGCTA
* *
14180276 CCCGTTA-ATTGCTCTTCAGAGCTA
1 CCCGTTATATGGCTCTTCGGAGCTA
*
14180300 CCCGTTCAT-T-ACTCTTCGGAGCTA
1 CCCGTT-ATATGGCTCTTCGGAGCTA
14180324 CCCGTTATA-GGCTCTT
1 CCCGTTATATGGCTCTT
14180340 TGTGAGCTTT
Statistics
Matches: 52, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
23 2 0.04
24 41 0.79
25 9 0.17
ACGTcount: A:0.17, C:0.30, G:0.19, T:0.34
Consensus pattern (25 bp):
CCCGTTATATGGCTCTTCGGAGCTA
Found at i:14200349 original size:9 final size:9
Alignment explanation
Indices: 14200335--14200442 Score: 60
Period size: 9 Copynumber: 11.9 Consensus size: 9
14200325 TATATTCTTT
14200335 AAATTTTTA
1 AAATTTTTA
14200344 AAATTTTTA
1 AAATTTTTA
*
14200353 AAATTTTAA
1 AAATTTTTA
** *
14200362 AAAAATGTA
1 AAATTTTTA
14200371 TAAA-TTTTA
1 -AAATTTTTA
*
14200380 GAATTTTTA
1 AAATTTTTA
*
14200389 AGA-TTTTA
1 AAATTTTTA
** *
14200397 AAAAATGTA
1 AAATTTTTA
14200406 TAAA-TTTTA
1 -AAATTTTTA
* *
14200415 GAATTTTAA
1 AAATTTTTA
14200424 AAATTATATTA
1 AAATT-T-TTA
14200435 AAATTTTT
1 AAATTTTT
14200443 TTGTAATTTT
Statistics
Matches: 73, Mismatches: 19, Indels: 14
0.69 0.18 0.13
Matches are distributed among these distances:
8 11 0.15
9 47 0.64
10 8 0.11
11 7 0.10
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.47
Consensus pattern (9 bp):
AAATTTTTA
Found at i:14200407 original size:35 final size:36
Alignment explanation
Indices: 14200334--14200428 Score: 147
Period size: 35 Copynumber: 2.6 Consensus size: 36
14200324 ATATATTCTT
*
14200334 TAAATTTTTAAAATTTTTAAAATTTTAAAAAAATGTA
1 TAAA-TTTTAGAATTTTTAAAATTTTAAAAAAATGTA
*
14200371 TAAATTTTAGAATTTTTAAGATTTT-AAAAAATGTA
1 TAAATTTTAGAATTTTTAAAATTTTAAAAAAATGTA
*
14200406 TAAATTTTAGAATTTTAAAAATT
1 TAAATTTTAGAATTTTTAAAATT
14200429 ATATTAAAAT
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
35 31 0.57
36 19 0.35
37 4 0.07
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.46
Consensus pattern (36 bp):
TAAATTTTAGAATTTTTAAAATTTTAAAAAAATGTA
Found at i:14203231 original size:27 final size:26
Alignment explanation
Indices: 14203197--14203247 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
14203187 TTCTTTAGAA
14203197 TTTTTAAATAATATAAATTTTGAATT
1 TTTTTAAATAATATAAATTTTGAATT
* * *
14203223 TTTTATAAATATTTTGAATTTTGAA
1 TTTT-TAAATAATATAAATTTTGAA
14203248 AATTATTTGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 4 0.19
27 17 0.81
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (26 bp):
TTTTTAAATAATATAAATTTTGAATT
Found at i:14203250 original size:18 final size:19
Alignment explanation
Indices: 14203213--14203260 Score: 55
Period size: 18 Copynumber: 2.5 Consensus size: 19
14203203 AATAATATAA
*
14203213 ATTTTGAATTTTTTATAAAT
1 ATTTTGAA-TTTTGATAAAT
14203233 ATTTTGAATTTTGA-AAAT
1 ATTTTGAATTTTGATAAAT
14203251 -TATTTGAATT
1 AT-TTTGAATT
14203261 CTTCTTTTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 1 0.04
18 12 0.46
19 5 0.19
20 8 0.31
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.56
Consensus pattern (19 bp):
ATTTTGAATTTTGATAAAT
Found at i:14216575 original size:24 final size:24
Alignment explanation
Indices: 14216530--14216578 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
14216520 TATGCTACCA
*
14216530 AGGAGCCTACTCAAACTGCTGTTG
1 AGGAGCCTACTCAAACTACTGTTG
* **
14216554 AGGAGCCTCCTCAATTTACTGTTG
1 AGGAGCCTACTCAAACTACTGTTG
14216578 A
1 A
14216579 AGATCCCGAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (24 bp):
AGGAGCCTACTCAAACTACTGTTG
Found at i:14217062 original size:14 final size:14
Alignment explanation
Indices: 14217045--14217073 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
14217035 GTATGTATCA
14217045 TCATTTTAGTATAG
1 TCATTTTAGTATAG
14217059 TCATTTTAGTATAG
1 TCATTTTAGTATAG
14217073 T
1 T
14217074 TAAATCTACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.07, G:0.14, T:0.52
Consensus pattern (14 bp):
TCATTTTAGTATAG
Found at i:14228590 original size:25 final size:25
Alignment explanation
Indices: 14228556--14228688 Score: 91
Period size: 25 Copynumber: 5.6 Consensus size: 25
14228546 CTTATCAAAG
14228556 TACGCCACAAAGGCAACATATAAAA
1 TACGCCACAAAGGCAACATATAAAA
* *
14228581 TACGCCACAAAGG---C-TATCAGAG
1 TACGCCACAAAGGCAACATAT-AAAA
* *
14228603 TACGCCACAAAGGCAACATACAACA
1 TACGCCACAAAGGCAACATATAAAA
** * * *
14228628 TATACCACAAAGGC--TAT-TAGAG
1 TACGCCACAAAGGCAACATATAAAA
* *
14228650 TACGCCACAAAGGCAACAAACAAAA
1 TACGCCACAAAGGCAACATATAAAA
* *
14228675 TATGCCATAAAGGC
1 TACGCCACAAAGGC
14228689 CAAATAAAAT
Statistics
Matches: 78, Mismatches: 22, Indels: 16
0.67 0.19 0.14
Matches are distributed among these distances:
21 3 0.04
22 29 0.37
23 2 0.03
24 1 0.01
25 41 0.53
26 2 0.03
ACGTcount: A:0.46, C:0.26, G:0.16, T:0.13
Consensus pattern (25 bp):
TACGCCACAAAGGCAACATATAAAA
Found at i:14228605 original size:47 final size:47
Alignment explanation
Indices: 14228548--14228688 Score: 210
Period size: 47 Copynumber: 3.0 Consensus size: 47
14228538 AACATAGACT
* * *
14228548 TATCAAAGTACGCCACAAAGGCAACATATAAAATACGCCACAAAGGC
1 TATCAGAGTACGCCACAAAGGCAACATACAAAATATGCCACAAAGGC
* *
14228595 TATCAGAGTACGCCACAAAGGCAACATACAACATATACCACAAAGGC
1 TATCAGAGTACGCCACAAAGGCAACATACAAAATATGCCACAAAGGC
* * *
14228642 TATTAGAGTACGCCACAAAGGCAACAAACAAAATATGCCATAAAGGC
1 TATCAGAGTACGCCACAAAGGCAACATACAAAATATGCCACAAAGGC
14228689 CAAATAAAAT
Statistics
Matches: 84, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 84 1.00
ACGTcount: A:0.46, C:0.25, G:0.16, T:0.13
Consensus pattern (47 bp):
TATCAGAGTACGCCACAAAGGCAACATACAAAATATGCCACAAAGGC
Found at i:14228609 original size:22 final size:22
Alignment explanation
Indices: 14228581--14228663 Score: 78
Period size: 22 Copynumber: 3.6 Consensus size: 22
14228571 ACATATAAAA
14228581 TACGCCACAAAGGCTATCAGAG
1 TACGCCACAAAGGCTATCAGAG
* *
14228603 TACGCCACAAAGGCAACATACA-ACA
1 TACGCCACAAAGGC--TAT-CAGA-G
** *
14228628 TATACCACAAAGGCTATTAGAG
1 TACGCCACAAAGGCTATCAGAG
14228650 TACGCCACAAAGGC
1 TACGCCACAAAGGC
14228664 AACAAACAAA
Statistics
Matches: 47, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
22 27 0.57
23 3 0.06
24 3 0.06
25 14 0.30
ACGTcount: A:0.41, C:0.28, G:0.18, T:0.13
Consensus pattern (22 bp):
TACGCCACAAAGGCTATCAGAG
Found at i:14231037 original size:14 final size:14
Alignment explanation
Indices: 14231018--14231045 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
14231008 GGTTTCACCC
14231018 TTATTATTATTTTT
1 TTATTATTATTTTT
14231032 TTATTATTATTTTT
1 TTATTATTATTTTT
14231046 GTATATCATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (14 bp):
TTATTATTATTTTT
Found at i:14234521 original size:28 final size:28
Alignment explanation
Indices: 14234482--14234564 Score: 82
Period size: 28 Copynumber: 3.0 Consensus size: 28
14234472 TATAGTTTAA
* *
14234482 ATTTATTTATATAATAATATATTTTTTTT
1 ATTT-TTTATATAATAATATATTATTATT
14234511 ATTTTTTATATATAGTAATATA-TATTATT
1 ATTTTTTATATA-A-TAATATATTATTATT
* *
14234540 A-TTTATATATAATAGTATA-TATTAT
1 ATTTTTTATATAATAATATATTATTAT
14234565 ATGAAAGAGA
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
26 12 0.25
27 1 0.02
28 17 0.35
29 11 0.23
30 7 0.15
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (28 bp):
ATTTTTTATATAATAATATATTATTATT
Found at i:14234530 original size:30 final size:29
Alignment explanation
Indices: 14234482--14234564 Score: 89
Period size: 30 Copynumber: 2.9 Consensus size: 29
14234472 TATAGTTTAA
* * * *
14234482 ATTTATTTATATAATAATATATTTTTTTT
1 ATTTATATATATAGTAATATATTATTATT
*
14234511 ATTTTTTATATATAGTAATATA-TATTATT
1 A-TTTATATATATAGTAATATATTATTATT
14234540 ATTTATATATAATAGT-ATATATTAT
1 ATTTATATAT-ATAGTAATATATTAT
14234565 ATGAAAGAGA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
28 13 0.29
29 15 0.33
30 17 0.38
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (29 bp):
ATTTATATATATAGTAATATATTATTATT
Found at i:14234534 original size:32 final size:33
Alignment explanation
Indices: 14234483--14234545 Score: 85
Period size: 32 Copynumber: 1.9 Consensus size: 33
14234473 ATAGTTTAAA
* *
14234483 TTTATTTATATAATAATATATT-TTTTTTATTT
1 TTTATATATATAATAATATATTATTATTTATTT
14234515 TTTATATATAGTAAT-ATATATTATTATTTAT
1 TTTATATATA-TAATAATATATTATTATTTAT
14234546 ATATAATAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 16 0.59
33 11 0.41
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (33 bp):
TTTATATATATAATAATATATTATTATTTATTT
Found at i:14234538 original size:26 final size:26
Alignment explanation
Indices: 14234484--14234564 Score: 90
Period size: 26 Copynumber: 3.0 Consensus size: 26
14234474 TAGTTTAAAT
* * *
14234484 TTATTTATATAATAATATATTTTTTTTA
1 TTATTTATAT-ATAATA-ATATATATTA
* *
14234512 TTTTTTATATATAGTAATATATATTA
1 TTATTTATATATAATAATATATATTA
*
14234538 TTATTTATATATAATAGTATATATTA
1 TTATTTATATATAATAATATATATTA
14234564 T
1 T
14234565 ATGAAAGAGA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
26 31 0.69
27 5 0.11
28 9 0.20
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.59
Consensus pattern (26 bp):
TTATTTATATATAATAATATATATTA
Found at i:14234690 original size:26 final size:25
Alignment explanation
Indices: 14234660--14234726 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 25
14234650 AGTTTAAGGT
* *
14234660 TTTTTAACCTTATTTCTTATTTTATA
1 TTTTTAATCTTATTT-TTACTTTATA
* *
14234686 TTTTT-TTGTTATTTTTACTTTATA
1 TTTTTAATCTTATTTTTACTTTATA
14234710 TCTTTTAATCTTATTTT
1 T-TTTTAATCTTATTTT
14234727 ACATCATTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
24 10 0.30
25 10 0.30
26 13 0.39
ACGTcount: A:0.19, C:0.09, G:0.01, T:0.70
Consensus pattern (25 bp):
TTTTTAATCTTATTTTTACTTTATA
Found at i:14234715 original size:24 final size:25
Alignment explanation
Indices: 14234669--14234715 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
14234659 TTTTTTAACC
* *
14234669 TTATTTCTTATTTTATATTTTTTTG
1 TTATTTCTTACTTTATATCTTTTTG
14234694 TTATTT-TTACTTTATATCTTTT
1 TTATTTCTTACTTTATATCTTTT
14234716 AATCTTATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.74
Consensus pattern (25 bp):
TTATTTCTTACTTTATATCTTTTTG
Found at i:14239904 original size:23 final size:24
Alignment explanation
Indices: 14239873--14239939 Score: 84
Period size: 23 Copynumber: 2.9 Consensus size: 24
14239863 ACTATACCGT
*
14239873 AGTGTCAGAATGAATTGCACCA-A
1 AGTGCCAGAATGAATTGCACCATA
* *
14239896 AGTGCCAGAATGAATCGCATCATA
1 AGTGCCAGAATGAATTGCACCATA
*
14239920 A-TGCCAGAATGAATTCCACC
1 AGTGCCAGAATGAATTGCACC
14239940 TTAGTCACAA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
23 35 0.95
24 2 0.05
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.21
Consensus pattern (24 bp):
AGTGCCAGAATGAATTGCACCATA
Found at i:14245317 original size:28 final size:28
Alignment explanation
Indices: 14245285--14245343 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
14245275 TTAGTGTAGG
14245285 TTATTTTAATATTATTTGACCTACAAAT
1 TTATTTTAATATTATTTGACCTACAAAT
14245313 TTATTTTAATATTATTTGACCTACAAAT
1 TTATTTTAATATTATTTGACCTACAAAT
14245341 TTA
1 TTA
14245344 GTCTATAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.36, C:0.10, G:0.03, T:0.51
Consensus pattern (28 bp):
TTATTTTAATATTATTTGACCTACAAAT
Found at i:14261381 original size:41 final size:41
Alignment explanation
Indices: 14261311--14261392 Score: 128
Period size: 41 Copynumber: 2.0 Consensus size: 41
14261301 ATTAAACTCT
* *
14261311 ATTTTTTAGTTTCCCACTTAAAATTTGATTAGGGTAGGTTA
1 ATTTATTAGTTTCCCACTTAAAATCTGATTAGGGTAGGTTA
* *
14261352 ATTTATTATTTTCCCACTTAAAATCTGATTAGTGTAGGTTA
1 ATTTATTAGTTTCCCACTTAAAATCTGATTAGGGTAGGTTA
14261393 TTGTAATATT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.28, C:0.11, G:0.15, T:0.46
Consensus pattern (41 bp):
ATTTATTAGTTTCCCACTTAAAATCTGATTAGGGTAGGTTA
Found at i:14261472 original size:20 final size:20
Alignment explanation
Indices: 14261447--14261492 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 20
14261437 TTTTTCCACC
14261447 TAAAAAAAATTTAACCTTAT
1 TAAAAAAAATTTAACCTTAT
14261467 T---AAAAATTTAACCTTAT
1 TAAAAAAAATTTAACCTTAT
14261484 TGAAAAAAA
1 T-AAAAAAA
14261493 GTTTTCCCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 7
0.76 0.00 0.24
Matches are distributed among these distances:
17 17 0.77
20 1 0.05
21 4 0.18
ACGTcount: A:0.57, C:0.09, G:0.02, T:0.33
Consensus pattern (20 bp):
TAAAAAAAATTTAACCTTAT
Found at i:14261473 original size:17 final size:18
Alignment explanation
Indices: 14261451--14261490 Score: 73
Period size: 17 Copynumber: 2.3 Consensus size: 18
14261441 TCCACCTAAA
14261451 AAAAATTTAACCTTATT-
1 AAAAATTTAACCTTATTG
14261468 AAAAATTTAACCTTATTG
1 AAAAATTTAACCTTATTG
14261486 AAAAA
1 AAAAA
14261491 AAGTTTTCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 17 0.77
18 5 0.23
ACGTcount: A:0.53, C:0.10, G:0.03, T:0.35
Consensus pattern (18 bp):
AAAAATTTAACCTTATTG
Found at i:14274072 original size:18 final size:18
Alignment explanation
Indices: 14274049--14274085 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
14274039 TAAGATCATA
* *
14274049 ATATATTATATTATTTAT
1 ATATATCATATAATTTAT
14274067 ATATATCATATAATTTAT
1 ATATATCATATAATTTAT
14274085 A
1 A
14274086 ACATATAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (18 bp):
ATATATCATATAATTTAT
Found at i:14281308 original size:40 final size:39
Alignment explanation
Indices: 14281232--14281409 Score: 277
Period size: 39 Copynumber: 4.5 Consensus size: 39
14281222 AAATATATTT
* *
14281232 ATTTTTTAAATTTTAAAATATTTTTTACATACTTTTTTA
1 ATTTTTTAAATTTTAAAATATTTTTAAAATACTTTTTTA
14281271 ATTTTTTAAATTTTAAAATATTTTTAAAATACTTTTTTA
1 ATTTTTTAAATTTTAAAATATTTTTAAAATACTTTTTTA
*
14281310 ATTTTTT-AATTTTAAAATATTTTTAAAATACTTTTTTTT
1 ATTTTTTAAATTTTAAAATATTTTTAAAATAC-TTTTTTA
*
14281349 ATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTAA
1 ATTTTTTAAATTTTAAAATATTTTTAAAATACTTTTTT-A
*
14281389 ATTTTTAAAAATTTTAAAATA
1 ATTTTT-TAAATTTTAAAATA
14281410 AAAATGGGCC
Statistics
Matches: 129, Mismatches: 6, Indels: 6
0.91 0.04 0.04
Matches are distributed among these distances:
38 24 0.19
39 63 0.49
40 30 0.23
41 12 0.09
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (39 bp):
ATTTTTTAAATTTTAAAATATTTTTAAAATACTTTTTTA
Found at i:14281371 original size:10 final size:10
Alignment explanation
Indices: 14281358--14281409 Score: 54
Period size: 9 Copynumber: 5.1 Consensus size: 10
14281348 TATTTTTTTA
14281358 ATTTTAAAAT
1 ATTTTAAAAT
14281368 ATTTTTAAAAT
1 A-TTTTAAAAT
*
14281379 ACTTTTTTAAAT
1 A--TTTTAAAAT
14281391 -TTTTAAAA-
1 ATTTTAAAAT
14281399 ATTTTAAAAT
1 ATTTTAAAAT
14281409 A
1 A
14281410 AAAATGGGCC
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
9 15 0.42
10 2 0.06
11 10 0.28
12 9 0.25
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (10 bp):
ATTTTAAAAT
Found at i:14281390 original size:12 final size:11
Alignment explanation
Indices: 14281281--14281409 Score: 65
Period size: 11 Copynumber: 12.9 Consensus size: 11
14281271 ATTTTTTAAA
14281281 TTTTAAAATAT
1 TTTTAAAATAT
14281292 TTTTAAAATACT
1 TTTTAAAATA-T
*
14281304 TTTT-TAAT-T
1 TTTTAAAATAT
14281313 TTTT---A-A-
1 TTTTAAAATAT
14281319 TTTTAAAATAT
1 TTTTAAAATAT
14281330 TTTTAAAATACT
1 TTTTAAAATA-T
**
14281342 TTTT--TTTAT
1 TTTTAAAATAT
* *
14281351 TTTT---TTAA
1 TTTTAAAATAT
14281359 TTTTAAAATAT
1 TTTTAAAATAT
14281370 TTTTAAAATACT
1 TTTTAAAATA-T
*
14281382 TTTT-TAA-AT
1 TTTTAAAATAT
14281391 TTTTAAAA-A-
1 TTTTAAAATAT
14281400 TTTTAAAATA
1 TTTTAAAATA
14281410 AAAATGGGCC
Statistics
Matches: 96, Mismatches: 8, Indels: 29
0.72 0.06 0.22
Matches are distributed among these distances:
6 4 0.04
7 1 0.01
8 7 0.07
9 24 0.25
10 8 0.08
11 37 0.39
12 15 0.16
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:14289989 original size:22 final size:22
Alignment explanation
Indices: 14289961--14290016 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
14289951 TATATTTAAG
14289961 GAGAAAATACAAT-GATTAAAGA
1 GAGAAAATACAATAG-TTAAAGA
* *
14289983 GAGAAAATAAAATAGTTAAGGA
1 GAGAAAATACAATAGTTAAAGA
*
14290005 AAGAAAATACAA
1 GAGAAAATACAA
14290017 GACTATAAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 28 0.97
23 1 0.03
ACGTcount: A:0.62, C:0.04, G:0.18, T:0.16
Consensus pattern (22 bp):
GAGAAAATACAATAGTTAAAGA
Found at i:14290028 original size:22 final size:22
Alignment explanation
Indices: 14289962--14290028 Score: 57
Period size: 22 Copynumber: 3.0 Consensus size: 22
14289952 ATATTTAAGG
* *
14289962 AGAAAATACAATGATTA-AAGAG
1 AGAAAATACAA-GACTATAAGAA
* * *
14289984 AGAAAATAAAATAGT-TAAGGAA
1 AGAAAATACAAGACTATAA-GAA
14290006 AGAAAATACAAGACTATAAGAA
1 AGAAAATACAAGACTATAAGAA
14290028 A
1 A
14290029 TCAAAATCAT
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
21 4 0.11
22 28 0.80
23 3 0.09
ACGTcount: A:0.63, C:0.04, G:0.16, T:0.16
Consensus pattern (22 bp):
AGAAAATACAAGACTATAAGAA
Found at i:14295881 original size:21 final size:20
Alignment explanation
Indices: 14295857--14296023 Score: 64
Period size: 21 Copynumber: 7.7 Consensus size: 20
14295847 AACAAAAAAA
14295857 AATCAATTCAAAGAAGCAAAG
1 AATCAATTCAAA-AAGCAAAG
*
14295878 AATCGATTCAAAACAGCAATCATG
1 AATCAATTCAAAA-AGCAA--A-G
* *
14295902 AATCGATTCAAAGAAGCAAAT
1 AATCAATTCAAA-AAGCAAAG
** * *
14295923 AATTGATTTAAAACAACAATAATG
1 AATCAATTCAAAA-AGC-A-AA-G
* *
14295947 AATCAATTTAAAAAAGCAAAT
1 AATCAA-TTCAAAAAGCAAAG
* * *
14295968 AATCAATTTAAAACAACAAAC
1 AATCAATTCAAAA-AGCAAAG
* * *
14295989 AATCGATTCAAAGAAGAAGAAA
1 AATCAATTCAAA-AAGCA-AAG
*
14296011 AATCAATTTAAAA
1 AATCAATTCAAAA
14296024 TAACAAATTT
Statistics
Matches: 112, Mismatches: 21, Indels: 26
0.70 0.13 0.16
Matches are distributed among these distances:
20 8 0.07
21 52 0.46
22 17 0.15
23 4 0.04
24 24 0.21
25 7 0.06
ACGTcount: A:0.56, C:0.13, G:0.10, T:0.21
Consensus pattern (20 bp):
AATCAATTCAAAAAGCAAAG
Found at i:14295909 original size:24 final size:23
Alignment explanation
Indices: 14295857--14296000 Score: 83
Period size: 21 Copynumber: 6.5 Consensus size: 23
14295847 AACAAAAAAA
*
14295857 AATCAATTCAAAGA-AGCAA-A-G
1 AATCGATTCAAA-ACAGCAATATG
14295878 AATCGATTCAAAACAGCAATCATG
1 AATCGATTCAAAACAGCAAT-ATG
14295902 AATCGATTCAAAGA-AGCAA-AT-
1 AATCGATTCAAA-ACAGCAATATG
* * *
14295923 AATTGATTTAAAACAACAATAATG
1 AATCGATTCAAAACAGCAAT-ATG
* * *
14295947 AATCAATTTAAAAAAGCAA-AT-
1 AATCGATTCAAAACAGCAATATG
* * * *
14295968 AATCAATTTAAAACAACAA-A-C
1 AATCGATTCAAAACAGCAATATG
14295989 AATCGATTCAAA
1 AATCGATTCAAA
14296001 GAAGAAGAAA
Statistics
Matches: 101, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
20 2 0.02
21 58 0.57
22 4 0.04
23 3 0.03
24 33 0.33
25 1 0.01
ACGTcount: A:0.55, C:0.15, G:0.09, T:0.22
Consensus pattern (23 bp):
AATCGATTCAAAACAGCAATATG
Found at i:14295912 original size:45 final size:44
Alignment explanation
Indices: 14295841--14296029 Score: 179
Period size: 45 Copynumber: 4.3 Consensus size: 44
14295831 TAATGAATAA
** *
14295841 ATTTAAAACAA-AA-AAAAATCAATTCAAAGAAGCAAAGAATCG
1 ATTTAAAACAACAATATGAATCAATTCAAAGAAGCAAATAATCG
* * * *
14295883 ATTCAAAACAGCAATCATGAATCGATTCAAAGAAGCAAATAATTG
1 ATTTAAAACAACAAT-ATGAATCAATTCAAAGAAGCAAATAATCG
* * *
14295928 ATTTAAAACAACAATAATGAATCAATTTAAAAAAGCAAATAATCA
1 ATTTAAAACAACAAT-ATGAATCAATTCAAAGAAGCAAATAATCG
* * * * *
14295973 ATTTAAAACAACAA-A-CAATCGATTCAAAGAAGAAGAAAAATCA
1 ATTTAAAACAACAATATGAATCAATTCAAAGAAGCA-AATAATCG
*
14296016 ATTTAAAATAACAA
1 ATTTAAAACAACAA
14296030 ATTTAGTAAC
Statistics
Matches: 121, Mismatches: 22, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
42 23 0.19
43 23 0.19
45 75 0.62
ACGTcount: A:0.58, C:0.13, G:0.08, T:0.21
Consensus pattern (44 bp):
ATTTAAAACAACAATATGAATCAATTCAAAGAAGCAAATAATCG
Found at i:14296006 original size:90 final size:85
Alignment explanation
Indices: 14295816--14296030 Score: 193
Period size: 90 Copynumber: 2.5 Consensus size: 85
14295806 AATAATAAAG
* * * * *
14295816 AATCGATTCAAACAATAATGAATAAATTTAAAACAA-AAAAAAATCAATTCAAAGAAGCAAAGAA
1 AATCGATTCAAAGAAGAA-AAATCAATTTAAAACAACAAAAAAATCAATTCAAAAAAGCAAAGAA
* * *
14295880 TCGATTCAAAACAGCAATCATG
65 TCAATTCAAAACAACAA-CATC
** * *
14295902 AATCGATTCAAAGAAGCAAATAATTGATTTAAAACAACAATAATGAATCAATTTAAAAAAGCAAA
1 AATCGATTCAAAGAAG-AAA-AATCAATTTAAAACAACAA-AA-AAATCAATTCAAAAAAGCAAA
* *
14295967 TAATCAATTTAAAACAACAA-A-C
62 GAATCAATTCAAAACAACAACATC
*
14295989 AATCGATTCAAAGAAGAAGAAAAATCAATTTAAAATAACAAA
1 AATCGATTC--A-AAGAAGAAAAATCAATTTAAAACAACAAA
14296031 TTTAGTAACA
Statistics
Matches: 105, Mismatches: 16, Indels: 15
0.77 0.12 0.11
Matches are distributed among these distances:
86 14 0.13
87 26 0.25
88 19 0.18
89 6 0.06
90 40 0.38
ACGTcount: A:0.58, C:0.13, G:0.08, T:0.21
Consensus pattern (85 bp):
AATCGATTCAAAGAAGAAAAATCAATTTAAAACAACAAAAAAATCAATTCAAAAAAGCAAAGAAT
CAATTCAAAACAACAACATC
Found at i:14299699 original size:18 final size:19
Alignment explanation
Indices: 14299678--14299715 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
14299668 TTTTTTGCTC
14299678 TTTCTTT-TTTTTTGTTTT
1 TTTCTTTATTTTTTGTTTT
14299696 TTTCTTTATTTTTTGTTTT
1 TTTCTTTATTTTTTGTTTT
14299715 T
1 T
14299716 GTGTGTGTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.03, C:0.05, G:0.05, T:0.87
Consensus pattern (19 bp):
TTTCTTTATTTTTTGTTTT
Found at i:14299714 original size:17 final size:17
Alignment explanation
Indices: 14299661--14299715 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 17
14299651 TATTTTTATC
* *
14299661 TTCTTCTTTTTTTGCTCT
1 TTCTT-TTTTTTTGTTTT
14299679 TTCTTTTTTTTTGTTTTT
1 TTCTTTTTTTTTG-TTTT
14299697 TTCTTTATTTTTTGTTTT
1 TTCTTT-TTTTTTGTTTT
14299715 T
1 T
14299716 GTGTGTGTGA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
17 8 0.24
18 18 0.55
19 7 0.21
ACGTcount: A:0.02, C:0.11, G:0.05, T:0.82
Consensus pattern (17 bp):
TTCTTTTTTTTTGTTTT
Found at i:14299781 original size:2 final size:2
Alignment explanation
Indices: 14299774--14299800 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
14299764 TTATTCATTA
14299774 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
14299801 TTTTCTCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:14304076 original size:23 final size:23
Alignment explanation
Indices: 14304046--14304090 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
14304036 GTATAACTAT
14304046 AGGAGGCTCTCGTTGCACTTCAC
1 AGGAGGCTCTCGTTGCACTTCAC
14304069 AGGAGGCTCTCGTTGCACTTCA
1 AGGAGGCTCTCGTTGCACTTCA
14304091 GCTTCTTCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.18, C:0.29, G:0.27, T:0.27
Consensus pattern (23 bp):
AGGAGGCTCTCGTTGCACTTCAC
Found at i:14316150 original size:61 final size:61
Alignment explanation
Indices: 14316079--14316231 Score: 297
Period size: 61 Copynumber: 2.5 Consensus size: 61
14316069 AAGTATTTTT
*
14316079 TTAATTTTAGCTACTTGAATCATTATAATTTGGGTAAGTGTTAAAACAATTGCTATTATTG
1 TTAATTTTAGCTACTTGAATCATTACAATTTGGGTAAGTGTTAAAACAATTGCTATTATTG
14316140 TTAATTTTAGCTACTTGAATCATTACAATTTGGGTAAGTGTTAAAACAATTGCTATTATTG
1 TTAATTTTAGCTACTTGAATCATTACAATTTGGGTAAGTGTTAAAACAATTGCTATTATTG
14316201 TTAATTTTAGCTACTTGAATCATTACAATTT
1 TTAATTTTAGCTACTTGAATCATTACAATTT
14316232 CTATTGGAAG
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
61 91 1.00
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.44
Consensus pattern (61 bp):
TTAATTTTAGCTACTTGAATCATTACAATTTGGGTAAGTGTTAAAACAATTGCTATTATTG
Found at i:14316837 original size:16 final size:16
Alignment explanation
Indices: 14316816--14316846 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14316806 GTTATTATGA
14316816 TTGATTAAAAAACAAC
1 TTGATTAAAAAACAAC
*
14316832 TTGATTAAACAACAA
1 TTGATTAAAAAACAA
14316847 GTATTTGGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.13, G:0.06, T:0.26
Consensus pattern (16 bp):
TTGATTAAAAAACAAC
Found at i:14320060 original size:47 final size:47
Alignment explanation
Indices: 14320003--14320235 Score: 193
Period size: 47 Copynumber: 5.1 Consensus size: 47
14319993 ATAAGAACAT
*
14320003 TTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TTTATTATTAAGAATTTTATGAAATTATATATAATTATTAAATTATA
* ** * *
14320050 TTTAGTATTAATTA-TTT-T-AAATTGTATA-AATTCATATAAGA--AAA
1 TTTATTATTAAGAATTTTATGAAATTATATATAATT-AT-TAA-ATTATA
* *
14320094 TTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TTTATTATTAAGAATTTTATGAAATTATATATAATTATTAAATTATA
* ** *
14320141 TTTAATATTAATTA-TTT-T-AAATTATATA-AATTCATATAAGA--AAA
1 TTTATTATTAAGAATTTTATGAAATTATATATAATT-AT-TAA-ATTATA
* * *
14320185 TTTATTATCAAAAATTTTATGAAATTATATATTATTATTAAATTATA
1 TTTATTATTAAGAATTTTATGAAATTATATATAATTATTAAATTATA
14320232 TTTA
1 TTTA
14320236 ATAATAATTA
Statistics
Matches: 143, Mismatches: 25, Indels: 36
0.70 0.12 0.18
Matches are distributed among these distances:
43 6 0.04
44 47 0.33
45 16 0.11
46 16 0.11
47 52 0.36
48 6 0.04
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.49
Consensus pattern (47 bp):
TTTATTATTAAGAATTTTATGAAATTATATATAATTATTAAATTATA
Found at i:14320111 original size:44 final size:43
Alignment explanation
Indices: 14320063--14320282 Score: 128
Period size: 44 Copynumber: 4.9 Consensus size: 43
14320053 AGTATTAATT
*
14320063 ATTTTAAATTGTATAAATTCATATAAGAAAATTTATTATCAAGA
1 ATTTTAAATT-TATAAATTCATATAAGAAAATTTATTATCAAAA
* * * * * **
14320107 ATTTTATGAAATTATATA-TCATTATTAA-ATTATATTTAATATTAATT
1 ATTTTA--AATTTATAAATTCA-TA-TAAGA--AAATTTATTATCAAAA
14320154 ATTTTAAATTATATAAATTCATATAAGAAAATTTATTATCAAAA
1 ATTTTAAATT-TATAAATTCATATAAGAAAATTTATTATCAAAA
* * **
14320198 ATTTTATGAAATTATATATT-AT-T-ATTAAATTATATTTAAT-AATAA
1 ATTTTA--AATTTATAAATTCATATAAGAAAATT-TA-TT-ATCAA-AA
*
14320243 TTATTTTAAATTATACAAATTCATATAAGAAAATTTATTA
1 --ATTTTAAATT-TATAAATTCATATAAGAAAATTTATTA
14320283 GTTATAATTA
Statistics
Matches: 132, Mismatches: 23, Indels: 40
0.68 0.12 0.21
Matches are distributed among these distances:
42 6 0.05
43 3 0.02
44 32 0.24
45 28 0.21
46 24 0.18
47 30 0.23
48 3 0.02
49 6 0.05
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (43 bp):
ATTTTAAATTTATAAATTCATATAAGAAAATTTATTATCAAAA
Found at i:14320301 original size:91 final size:91
Alignment explanation
Indices: 14319984--14320282 Score: 517
Period size: 91 Copynumber: 3.3 Consensus size: 91
14319974 ACGATTTTAG
* *
14319984 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* *
14320049 ATTTAGTATTAATTATTTTAAATTGTA
65 ATTTAATATTAATTATTTTAAATTATA
14320076 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
14320141 TTTAATATTAATTATTTTAAATTATA
66 TTTAATATTAATTATTTTAAATTATA
* *
14320167 TAAATTCATATAAGAAAATTTATTATCAAAAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
*
14320232 TTTAATAATAATTATTTTAAATTATA
66 TTTAATATTAATTATTTTAAATTATA
*
14320258 CAAATTCATATAAGAAAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
14320283 GTTATAATTA
Statistics
Matches: 199, Mismatches: 8, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
91 183 0.92
92 16 0.08
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TTTAATATTAATTATTTTAAATTATA
Found at i:14320327 original size:18 final size:17
Alignment explanation
Indices: 14320299--14320333 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14320289 ATTATTTTAA
*
14320299 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
14320316 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
14320334 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:14320430 original size:120 final size:120
Alignment explanation
Indices: 14320298--14320715 Score: 782
Period size: 120 Copynumber: 3.5 Consensus size: 120
14320288 AATTATTTTA
14320298 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
14320363 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
*
14320418 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
*
14320483 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
* *
14320538 AATTTTATTAAATTATATATTTTAATTATAATATATTGAATAATAATTATGTTAAATTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
14320603 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
*
14320658 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
14320716 ATGATTAAAT
Statistics
Matches: 290, Mismatches: 7, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
120 284 0.98
121 6 0.02
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
Found at i:14320447 original size:18 final size:17
Alignment explanation
Indices: 14320419--14320453 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14320409 ATTATTAAGA
*
14320419 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
14320436 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
14320454 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:14320693 original size:16 final size:16
Alignment explanation
Indices: 14320672--14320713 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
14320662 TTATTAAATT
*
14320672 ATATATTTTAATTATA
1 ATATATTTTAATAATA
14320688 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
14320703 AT-TATGTTTAA
1 ATATAT-TTTAA
14320714 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:14320698 original size:15 final size:15
Alignment explanation
Indices: 14320663--14320704 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
14320653 TTAAGAATTT
*
14320663 TATTAAATTAT-ATA
1 TATTTAATTATAATA
14320677 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
14320691 TATTTAATAATAAT
1 TATTTAATTATAAT
14320705 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:14320948 original size:16 final size:16
Alignment explanation
Indices: 14320927--14320959 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
14320917 TTGATTTGCT
14320927 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
14320943 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
14320959 A
1 A
14320960 ATACAGCGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.36, G:0.06, T:0.36
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:14329566 original size:112 final size:112
Alignment explanation
Indices: 14329345--14329568 Score: 405
Period size: 113 Copynumber: 2.0 Consensus size: 112
14329335 CGTAAATTTC
*
14329345 TCTAAACTCAAACTTGGAAAGTGATAAGGTTTTGTTTCCAAAACAACATTAGGGAAACTAGTTGA
1 TCTAAACTCAAACTTGGAAAGTGATAAGGTTTTGTTTCCAAAACAACATTAGAGAAACTAGTTGA
*
14329410 TAATGTGTCACTATGATTGCATATTTCAAGTTAAAAAAAACCCCAGA
66 TAATGTGTCACAATGATTGCATATTTCAAGTTAAAAAAAACCCCAGA
*
14329457 TCTAAACTCAAAACTTGGAAAGTGATAAGGTTTTGTTTCCAAAACAACATTCGAGAAACTAGTTG
1 TCTAAACTC-AAACTTGGAAAGTGATAAGGTTTTGTTTCCAAAACAACATTAGAGAAACTAGTTG
14329522 ATAATGTGTC-CAATGATTGCATATTTCAAGTTAAAAAAAACCCCAGA
65 ATAATGTGTCACAATGATTGCATATTTCAAGTTAAAAAAAACCCCAGA
14329569 AACAGCAGTG
Statistics
Matches: 108, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
112 45 0.42
113 63 0.58
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.29
Consensus pattern (112 bp):
TCTAAACTCAAACTTGGAAAGTGATAAGGTTTTGTTTCCAAAACAACATTAGAGAAACTAGTTGA
TAATGTGTCACAATGATTGCATATTTCAAGTTAAAAAAAACCCCAGA
Found at i:14330330 original size:81 final size:81
Alignment explanation
Indices: 14330226--14330387 Score: 315
Period size: 81 Copynumber: 2.0 Consensus size: 81
14330216 TGGCAGGGTC
*
14330226 GGATCACATTATCAAGTAGGTTCCTATCCTTGTATATACATACATCATCTAATTATATAGTTTTA
1 GGATCACATTATCAAGTAGGTTCCTATCCTTCTATATACATACATCATCTAATTATATAGTTTTA
14330291 TCCATTTCAGCATGTT
66 TCCATTTCAGCATGTT
14330307 GGATCACATTATCAAGTAGGTTCCTATCCTTCTATATACATACATCATCTAATTATATAGTTTTA
1 GGATCACATTATCAAGTAGGTTCCTATCCTTCTATATACATACATCATCTAATTATATAGTTTTA
14330372 TCCATTTCAGCATGTT
66 TCCATTTCAGCATGTT
14330388 ATTGCATGAG
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.30, C:0.19, G:0.10, T:0.41
Consensus pattern (81 bp):
GGATCACATTATCAAGTAGGTTCCTATCCTTCTATATACATACATCATCTAATTATATAGTTTTA
TCCATTTCAGCATGTT
Found at i:14345594 original size:24 final size:23
Alignment explanation
Indices: 14345540--14345594 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 23
14345530 GTTTTATCCA
14345540 AAAAAT-AATAAAATAAAAACAT
1 AAAAATAAATAAAATAAAAACAT
* *
14345562 AAAATATAAATAAAGTAAAAAGAT
1 AAAA-ATAAATAAAATAAAAACAT
14345586 AACAAATAA
1 AA-AAATAA
14345595 GTAGCTAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 4 0.14
23 2 0.07
24 20 0.71
25 2 0.07
ACGTcount: A:0.75, C:0.04, G:0.04, T:0.18
Consensus pattern (23 bp):
AAAAATAAATAAAATAAAAACAT
Found at i:14347179 original size:67 final size:67
Alignment explanation
Indices: 14347100--14347226 Score: 227
Period size: 67 Copynumber: 1.9 Consensus size: 67
14347090 TTTTCAATCT
* *
14347100 AGAGAGCACACTCCCGCGAACCTCATTTCTTACAGTGGGATTACCAATTCAGGCTAAATCTCCTC
1 AGAGAGCACACTCCCGCGAACCTCATTTCTTACAGCGGGATTACCAATCCAGGCTAAATCTCCTC
14347165 CA
66 CA
*
14347167 AGAGAGCACACTCCCGCGAACCTCATTTCTTACAGCGGGATTACCAGTCCAGGCTAAATC
1 AGAGAGCACACTCCCGCGAACCTCATTTCTTACAGCGGGATTACCAATCCAGGCTAAATC
14347227 CCTTGTAATA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.22
Consensus pattern (67 bp):
AGAGAGCACACTCCCGCGAACCTCATTTCTTACAGCGGGATTACCAATCCAGGCTAAATCTCCTC
CA
Found at i:14347462 original size:57 final size:59
Alignment explanation
Indices: 14347386--14347501 Score: 175
Period size: 57 Copynumber: 2.0 Consensus size: 59
14347376 GCTAAATCTA
*
14347386 TTTTCCACATATTCTTCGGGAGGGCTATATC-A-A-GATCACTCGTCCGGGCTAGATTT
1 TTTTCCACATATTCTTCGGGAGGGCTATATCGATAGGATCACCCGTCCGGGCTAGATTT
14347442 TTTTCACACATATTCTTCGGGAGGGCTATATCAGGATAGGATCACCCGTCCGGGCTAGAT
1 TTTTC-CACATATTCTTCGGGAGGGCTATATC--GATAGGATCACCCGTCCGGGCTAGAT
14347502 CCTTTTTACC
Statistics
Matches: 53, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
56 5 0.09
57 26 0.49
60 1 0.02
61 1 0.02
62 20 0.38
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.31
Consensus pattern (59 bp):
TTTTCCACATATTCTTCGGGAGGGCTATATCGATAGGATCACCCGTCCGGGCTAGATTT
Found at i:14348553 original size:46 final size:46
Alignment explanation
Indices: 14348449--14348701 Score: 435
Period size: 46 Copynumber: 5.6 Consensus size: 46
14348439 TACGTATGAT
*
14348449 CACTTATCAC-TTGTTC-C-TGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTG-TCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
14348492 CACTTATCAGTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
14348538 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
14348583 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
14348629 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
14348675 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
14348702 AGTACTCAAA
Statistics
Matches: 200, Mismatches: 5, Indels: 7
0.94 0.02 0.03
Matches are distributed among these distances:
43 11 0.05
44 4 0.02
45 63 0.31
46 122 0.61
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.33
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:14348573 original size:91 final size:91
Alignment explanation
Indices: 14348449--14348701 Score: 449
Period size: 91 Copynumber: 2.8 Consensus size: 91
14348439 TACGTATGAT
*
14348449 CACTTATCAC-TTGTTC-C-TGATCAGATAAGTGTAGCTAGGCTACCACTTATCAGTTTGTCACT
1 CACTTATCACTTTG-TCACTTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACT
14348511 TGATCAGATAAGTGTAGCTAAAGCTAC
65 TGATCAGATAAGTGTAGCTAAAGCTAC
14348538 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTT
14348603 GATCAGATAAGTGTAGCTAAAGCTAC
66 GATCAGATAAGTGTAGCTAAAGCTAC
*
14348629 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AGGCTACCACTTATCACTTTGTCACT
14348694 TGATCAGA
65 TGATCAGA
14348702 AGTACTCAAA
Statistics
Matches: 158, Mismatches: 2, Indels: 5
0.96 0.01 0.03
Matches are distributed among these distances:
89 12 0.08
90 4 0.03
91 109 0.69
92 33 0.21
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.33
Consensus pattern (91 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTT
GATCAGATAAGTGTAGCTAAAGCTAC
Found at i:14357342 original size:3 final size:3
Alignment explanation
Indices: 14357334--14357386 Score: 63
Period size: 3 Copynumber: 17.7 Consensus size: 3
14357324 ATAATCAAAT
* **
14357334 ATA ATA ATA ACA ATA ATAA ATA GGA A-A ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
14357379 ATA ATA AT
1 ATA ATA AT
14357387 TAAGTAATTA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
2 2 0.05
3 38 0.88
4 3 0.07
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:14357345 original size:39 final size:42
Alignment explanation
Indices: 14357282--14357385 Score: 110
Period size: 39 Copynumber: 2.5 Consensus size: 42
14357272 ACAGTCTAAA
* * * *
14357282 AATAATAGTAAATAATAA-AGTAACACAT-ATATATAGGTAAAT
1 AATAATAAT-AATAATAATAATAACA-ATAATAAATAGGAAAAT
*
14357324 -ATAATCA-AAT-ATAATAATAACAATAATAAATAGGAAAAT
1 AATAATAATAATAATAATAATAACAATAATAAATAGGAAAAT
14357363 AATAATAATAATAATAATAATAA
1 AATAATAATAATAATAATAATAA
14357386 TTAAGTAATT
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
38 6 0.12
39 21 0.41
40 6 0.12
41 8 0.16
42 10 0.20
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.28
Consensus pattern (42 bp):
AATAATAATAATAATAATAATAACAATAATAAATAGGAAAAT
Found at i:14359018 original size:44 final size:45
Alignment explanation
Indices: 14358970--14359159 Score: 232
Period size: 44 Copynumber: 4.3 Consensus size: 45
14358960 ACTACTGCTT
* *
14358970 AGGGAGAC-AGGA-TCTACAATCTTCAACCTATTCCATTGTTGTTT
1 AGGGAGACTAGGACT-TACAATCTTCAACCTATTCCATTGCTGTTC
*
14359014 AGGGAGA-TAGGACATACAATCTTTC-ACCTATTCCATTGCTGTTC
1 AGGGAGACTAGGACTTACAATC-TTCAACCTATTCCATTGCTGTTC
* *
14359058 AGGGAG-CTAGGACTTACAATCTTCCACCTATTCCACTGCTGTTC
1 AGGGAGACTAGGACTTACAATCTTCAACCTATTCCATTGCTGTTC
* * * *
14359102 AGGGA-TCTAGGACTTACAATCTTCAACCTATTCCACTACTGGTC
1 AGGGAGACTAGGACTTACAATCTTCAACCTATTCCATTGCTGTTC
14359146 AGGGAGA-TAGGACT
1 AGGGAGACTAGGACT
14359160 AATGGCTTAA
Statistics
Matches: 130, Mismatches: 9, Indels: 14
0.85 0.06 0.09
Matches are distributed among these distances:
43 3 0.02
44 124 0.95
45 3 0.02
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (45 bp):
AGGGAGACTAGGACTTACAATCTTCAACCTATTCCATTGCTGTTC
Found at i:14359256 original size:44 final size:44
Alignment explanation
Indices: 14359191--14359288 Score: 101
Period size: 44 Copynumber: 2.2 Consensus size: 44
14359181 TACTACCTGG
* * * * *
14359191 GGAAGATAAGATTCGCCATTTT-TGATCTGCTCCACTATTACTTA
1 GGAAGATAAGATTCGCAATTTTCAG-CCTACTCCACTACTACTTA
*
14359235 GGAAGATAAGA-TCTGTAATTTTCAGCCTACTCCACTACTACTTA
1 GGAAGATAAGATTC-GCAATTTTCAGCCTACTCCACTACTACTTA
*
14359279 GGGAGATAAG
1 GGAAGATAAG
14359289 GCTTACAATC
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
43 2 0.04
44 42 0.93
45 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (44 bp):
GGAAGATAAGATTCGCAATTTTCAGCCTACTCCACTACTACTTA
Found at i:14372232 original size:3 final size:3
Alignment explanation
Indices: 14372224--14372292 Score: 70
Period size: 3 Copynumber: 22.7 Consensus size: 3
14372214 ATAATCAAAT
* *
14372224 ATA ATA ATA AAA ATA ATAA ATA GTA A-A ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
14372269 ATA GCA-A ATA ATA ATA AAA ATA AT
1 ATA --ATA ATA ATA ATA ATA ATA AT
14372293 TAAGTGATTA
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
2 3 0.05
3 47 0.85
4 4 0.07
5 1 0.02
ACGTcount: A:0.68, C:0.01, G:0.03, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:14372253 original size:21 final size:21
Alignment explanation
Indices: 14372209--14372292 Score: 73
Period size: 22 Copynumber: 3.9 Consensus size: 21
14372199 TATATATTGG
*
14372209 TAAATATAATCAAATATAATAA
1 TAAAAATAAT-AAATATAATAA
14372231 TAAAAATAATAAATAGTAA-AA
1 TAAAAATAATAAATA-TAATAA
* *
14372252 TAATAATAAT-AATAATAATAG
1 TAAAAATAATAAAT-ATAATAA
* *
14372273 CAAATAATAATAAAAATAAT
1 TAAA-AATAATAAATATAAT
14372293 TAAGTGATTA
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
20 6 0.12
21 20 0.39
22 23 0.45
23 2 0.04
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (21 bp):
TAAAAATAATAAATATAATAA
Done.