Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 51 of 221
Found at i:14647779 original size:12 final size:12
Alignment explanation
Indices: 14647762--14647791 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14647752 TATAGTATCA
14647762 AGTTCTAATACG
1 AGTTCTAATACG
*
14647774 AGTTCTAATATG
1 AGTTCTAATACG
14647786 AGTTCT
1 AGTTCT
14647792 GAATCGAGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (12 bp):
AGTTCTAATACG
Found at i:14649194 original size:20 final size:20
Alignment explanation
Indices: 14649143--14649194 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 20
14649133 CTTATGCTAG
* *
14649143 GTAAATGGAATGGAAAGAAA
1 GTAAATAGAATGAAAAGAAA
* * *
14649163 GTAAATAAAATGAAAAGTAT
1 GTAAATAGAATGAAAAGAAA
*
14649183 GTAAATTGAATG
1 GTAAATAGAATG
14649195 GTAAGTAAGA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.54, C:0.00, G:0.23, T:0.23
Consensus pattern (20 bp):
GTAAATAGAATGAAAAGAAA
Found at i:14649816 original size:92 final size:92
Alignment explanation
Indices: 14649659--14649845 Score: 365
Period size: 92 Copynumber: 2.0 Consensus size: 92
14649649 GTTTACGTAA
*
14649659 TCTTGGTAGTTTTGGTGCCTTAGTGATGTGTGTGAATATGGCTAAGTTATGGTGCATGTTTAAGT
1 TCTTGGTAGTTTTGGCGCCTTAGTGATGTGTGTGAATATGGCTAAGTTATGGTGCATGTTTAAGT
14649724 GACTAAATTGTATGTTTGTGTTTAAGT
66 GACTAAATTGTATGTTTGTGTTTAAGT
14649751 TCTTGGTAGTTTTGGCGCCTTAGTGATGTGTGTGAATATGGCTAAGTTATGGTGCATGTTTAAGT
1 TCTTGGTAGTTTTGGCGCCTTAGTGATGTGTGTGAATATGGCTAAGTTATGGTGCATGTTTAAGT
14649816 GACTAAATTGTATGTTTGTGTTTAAGT
66 GACTAAATTGTATGTTTGTGTTTAAGT
14649843 TCT
1 TCT
14649846 AATGGTCATA
Statistics
Matches: 94, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
92 94 1.00
ACGTcount: A:0.20, C:0.07, G:0.28, T:0.44
Consensus pattern (92 bp):
TCTTGGTAGTTTTGGCGCCTTAGTGATGTGTGTGAATATGGCTAAGTTATGGTGCATGTTTAAGT
GACTAAATTGTATGTTTGTGTTTAAGT
Found at i:14656773 original size:39 final size:40
Alignment explanation
Indices: 14656678--14656939 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
14656668 TTGAATGATG
*
14656678 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
14656716 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
14656757 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
14656796 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
14656835 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
14656874 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
14656913 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
14656940 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:14664790 original size:39 final size:40
Alignment explanation
Indices: 14664695--14664956 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
14664685 TTGAATGATG
*
14664695 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
14664733 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
14664774 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
14664813 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
14664852 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
14664891 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
14664930 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
14664957 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:14668825 original size:27 final size:27
Alignment explanation
Indices: 14668787--14668839 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
14668777 GCAGTGCTCG
*
14668787 TAGATATGTTTTGGCAAACTATGTTCC
1 TAGATATGTTTTGGCAAACTAAGTTCC
*
14668814 TAGATGTGTTTTGGCAAACTAAGTTC
1 TAGATATGTTTTGGCAAACTAAGTTC
14668840 TCAAATGTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.40
Consensus pattern (27 bp):
TAGATATGTTTTGGCAAACTAAGTTCC
Found at i:14668847 original size:27 final size:27
Alignment explanation
Indices: 14668793--14668848 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
14668783 CTCGTAGATA
* *
14668793 TGTTTTGGCAAACTATGTTCCTAGATG
1 TGTTTTGGCAAACTAAGTTCCTAAATG
14668820 TGTTTTGGCAAACTAAGTT-CTCAAATG
1 TGTTTTGGCAAACTAAGTTCCT-AAATG
14668847 TG
1 TG
14668849 GTTGTCAAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 2 0.08
27 24 0.92
ACGTcount: A:0.25, C:0.14, G:0.21, T:0.39
Consensus pattern (27 bp):
TGTTTTGGCAAACTAAGTTCCTAAATG
Found at i:14676474 original size:16 final size:18
Alignment explanation
Indices: 14676436--14676476 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
14676426 ATATGAACAG
14676436 TGATTTACGAGCTCCTCA
1 TGATTTACGAGCTCCTCA
*
14676454 TGATTTGCGAGCT-CT-A
1 TGATTTACGAGCTCCTCA
14676470 TGATTTA
1 TGATTTA
14676477 GTAAATATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 2 0.10
18 12 0.57
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.39
Consensus pattern (18 bp):
TGATTTACGAGCTCCTCA
Found at i:14683389 original size:22 final size:20
Alignment explanation
Indices: 14683357--14683406 Score: 64
Period size: 22 Copynumber: 2.4 Consensus size: 20
14683347 TTTCTCTCAA
14683357 TCTCTCTTTCAATATCCTCTATT
1 TCTCT-TTTCAATAT-CTCT-TT
*
14683380 TTTCTTTTCAATATCTCTTT
1 TCTCTTTTCAATATCTCTTT
14683400 TCTCTTT
1 TCTCTTT
14683407 GCTTTATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 8 0.32
21 4 0.16
22 9 0.36
23 4 0.16
ACGTcount: A:0.14, C:0.26, G:0.00, T:0.60
Consensus pattern (20 bp):
TCTCTTTTCAATATCTCTTT
Found at i:14691577 original size:52 final size:52
Alignment explanation
Indices: 14691512--14691614 Score: 197
Period size: 52 Copynumber: 2.0 Consensus size: 52
14691502 TGCTAAAAAG
14691512 AATATCCCATACCTTTATAGGTATTGTGAAACTCCCCGGGTCTTTTAAATTT
1 AATATCCCATACCTTTATAGGTATTGTGAAACTCCCCGGGTCTTTTAAATTT
*
14691564 AATATCCCCTACCTTTATAGGTATTGTGAAACTCCCCGGGTCTTTTAAATT
1 AATATCCCATACCTTTATAGGTATTGTGAAACTCCCCGGGTCTTTTAAATT
14691615 CAGGAGAACA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.38
Consensus pattern (52 bp):
AATATCCCATACCTTTATAGGTATTGTGAAACTCCCCGGGTCTTTTAAATTT
Found at i:14699548 original size:51 final size:51
Alignment explanation
Indices: 14699459--14699581 Score: 176
Period size: 51 Copynumber: 2.4 Consensus size: 51
14699449 CCAAGTAACT
* * * *
14699459 CTTACTCTATGTGGTCTTCTCTTGCCATATGATGCCATAGCAAAT-GTCTAGGC
1 CTTACACTATATGGTC-T-TCTAGCCATATGATACCATAGCAAATAGT-TAGGC
14699512 CTTACACTATATGGTCTTCTAGCCATATGATACCATAGCAAATAGTTAGGC
1 CTTACACTATATGGTCTTCTAGCCATATGATACCATAGCAAATAGTTAGGC
14699563 CTTACACTATATGGTCTTC
1 CTTACACTATATGGTCTTC
14699582 ACTTATCATG
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
51 48 0.74
52 3 0.05
53 14 0.22
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (51 bp):
CTTACACTATATGGTCTTCTAGCCATATGATACCATAGCAAATAGTTAGGC
Found at i:14703756 original size:129 final size:130
Alignment explanation
Indices: 14703541--14703789 Score: 286
Period size: 129 Copynumber: 1.9 Consensus size: 130
14703531 GACTTATTTT
* * * * *
14703541 ATTTACAATCACTACACCAAACAGTTCACCGATTTAATATCCCAATTGATATTATTAAGGCTAGC
1 ATTTACAATCACTACACCAAACACTTCACCGATTTAAGATCACAACTGATATTATTAAAGCTAGC
* *
14703606 TAATTTACTATCACAGCCTAAGCTCATT-TGATACTATCATGAATAATCTTCTCTGCGATAACTG
66 TAATTTACGATCACAGCCTAAGCTCATTATGATACTATCATGAACAATCTTCTCTGCGATAACTG
* * * * * *
14703670 ATTTACTATCACTACTCCAAATACTTCACTGATTTAAGATCACAGCTGGTATTATTAAAGCTCA-
1 ATTTACAATCACTACACCAAACACTTCACCGATTTAAGATCACAACTGATATTATTAAAGCT-AG
* * * * * * **
14703734 TTGATTTACGATCATAGTCTAAGTTGATTATTTTACTATCATGAACAATCTTCTCT
65 CTAATTTACGATCACAGCCTAAGCTCATTATGATACTATCATGAACAATCTTCTCT
14703790 AAGTTAGCAT
Statistics
Matches: 97, Mismatches: 21, Indels: 3
0.80 0.17 0.02
Matches are distributed among these distances:
129 73 0.75
130 24 0.25
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (130 bp):
ATTTACAATCACTACACCAAACACTTCACCGATTTAAGATCACAACTGATATTATTAAAGCTAGC
TAATTTACGATCACAGCCTAAGCTCATTATGATACTATCATGAACAATCTTCTCTGCGATAACTG
Found at i:14703820 original size:130 final size:130
Alignment explanation
Indices: 14703571--14704183 Score: 433
Period size: 130 Copynumber: 4.7 Consensus size: 130
14703561 ACAGTTCACC
* * * * * * * * *
14703571 GATTTAATATCCCAATTGATATTATTAAGGCT-AGCTAATTTACTATCACAGCCTAAGCTCATTT
1 GATTTAATATCACAGTTGGTATTATTAAGGCTCA-TTGATTTACGATCATAGTCTAAGTTCA-TT
* ** * * * *
14703635 GA--TACTATCATGAATAATCTTCTCTGCGATA-ACTGATTTACTATCACTACTCCAAATA-CTT
64 GATTTACTATCATGAACAATCTTCTCTAAGTTAGA-TGACTTACTAACGCTACTCCAAATAGC-T
*
14703696 CACT
127 CGCT
* * * *
14703700 GATTTAAGATCACAGCTGGTATTATTAAAGCTCATTGATTTACGATCATAGTCTAAGTTGATT-A
1 GATTTAATATCACAGTTGGTATTATTAAGGCTCATTGATTTACGATCATAGTCTAAGTTCATTGA
*
14703764 TTTTACTATCATGAACAATCTTCTCTAAGTTAGCAT-ACTTGCTAACGCTACTCCAAATAGCTCG
66 -TTTACTATCATGAACAATCTTCTCTAAGTTAG-ATGACTTACTAACGCTACTCCAAATAGCTCG
*
14703828 TT
129 CT
* * * * * * *
14703830 GATTTAATATCATAATTGGTATTATTAAGGTTCGTTGATTT-CTAATCATAATCTAAGTTTATTG
1 GATTTAATATCACAGTTGGTATTATTAAGGCTCATTGATTTAC-GATCATAGTCTAAGTTCATTG
* * * * * * * *
14703894 ATTTACTGTCATGAAAAATCTTCTTTGAGTTAGTTGATTTACTATCGCTACTCCAAACAGCTCGC
65 ATTTACTATCATGAACAATCTTCTCTAAGTTAGATGACTTACTAACGCTACTCCAAATAGCTCGC
14703959 T
130 T
* * * * * *
14703960 GATTTCATATCACAGTTGATATTATTATGGCTCACTGGTTTACGATCACAGGT-TAAGTTCATTG
1 GATTTAATATCACAGTTGGTATTATTAAGGCTCATTGATTTACGATCATA-GTCTAAGTTCATTG
* * * * * *** * *
14704024 ATTTACTA-CAATGAACAATCTTC-CATGAGTTAGCTGATTTTCTATA-GCTATTTTGAACAACT
65 ATTTACTATC-ATGAACAATCTTCTC-TAAGTTAGATGACTTACTA-ACGCTACTCCAAATAGCT
*
14704086 CGAT
127 CGCT
* * ** * * * *
14704090 GATTTAATATCACAATTGATATTATTAAGGCTTGTTGATTTATGATGATAGCCTAAGTTTATTGA
1 GATTTAATATCACAGTTGGTATTATTAAGGCTCATTGATTTACGATCATAGTCTAAGTTCATTGA
* * * *
14704155 TTTACGAACCTGAATAATCTTCT-TAAGTT
66 TTTACTATCATGAACAATCTTCTCTAAGTT
14704184 GATTTATGAT
Statistics
Matches: 382, Mismatches: 84, Indels: 36
0.76 0.17 0.07
Matches are distributed among these distances:
127 1 0.00
128 2 0.01
129 55 0.14
130 317 0.83
131 6 0.02
132 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (130 bp):
GATTTAATATCACAGTTGGTATTATTAAGGCTCATTGATTTACGATCATAGTCTAAGTTCATTGA
TTTACTATCATGAACAATCTTCTCTAAGTTAGATGACTTACTAACGCTACTCCAAATAGCTCGCT
Found at i:14704178 original size:260 final size:259
Alignment explanation
Indices: 14703571--14704178 Score: 617
Period size: 260 Copynumber: 2.3 Consensus size: 259
14703561 ACAGTTCACC
* * * * * * *
14703571 GATTTAATATCCCAATTGATATTATTAAGGCTAGCTAATTTACTATCACAGCCTAAGCTCATTTG
1 GATTTAATATCACAATTGATATTATTAAGGCTTGTTGATTTA-TATCATAGCCTAAGTTTA-TTG
* * * *
14703636 A--TACTATCATGAATAATCTTCTCTGCGATAACTGATTTACTATCACTACTCCAAATACTTCAC
64 ATTTACGATCATGAATAATCTTCTTTGAGATAACTGATTTACTATCACTACTCCAAACACTTCAC
* * * *
14703699 TGATTTAAGATCACAGCTGGTATTATTAAAGCTCATTGATTTACGATCATAGTCTAAGTTGATTA
129 TGATTTAAGATCACAGCTGATATTATTAAAGCTCACTGATTTACGATCACAGTCTAAGTTCATTA
* * *
14703764 TTTTACTATCATGAACAATCTTCTCTAAGTTAGCATACTTGCTAACGCTACTCCAAATAGCTCGT
194 TTTTACTATCATGAACAATCTTCTCTAAGTTAGCATACTTGCTAACGCTACTCCAAACAACTCGA
14703829 T
259 T
* * * **
14703830 GATTTAATATCATAATTGGTATTATTAAGG-TTCGTTGATTTCTAATCATAATCTAAGTTTATTG
1 GATTTAATATCACAATTGATATTATTAAGGCTT-GTTGATTTAT-ATCATAGCCTAAGTTTATTG
* * ** *
14703894 ATTTACTG-TCATGAAAAATCTTCTTTGAGTTAGTTGATTTACTATCGCTACTCCAAACAGC-TC
64 ATTTAC-GATCATGAATAATCTTCTTTGAGATAACTGATTTACTATCACTACTCCAAACA-CTTC
* * * * ** *
14703957 GCTGATTTCATATCACAGTTGATATTATTATGGCTCACTGGTTTACGATCACAGGT-TAAGTTCA
127 ACTGATTTAAGATCACAGCTGATATTATTAAAGCTCACTGATTTACGATCACA-GTCTAAGTTCA
* * * * ***
14704021 TTGA-TTTACTA-CAATGAACAATCTTC-CATGAGTTAGC-TGATTTTCTATA-GCTATTTTGAA
191 TT-ATTTTACTATC-ATGAACAATCTTCTC-TAAGTTAGCAT-ACTTGCTA-ACGCTACTCCAAA
14704081 CAACTCGAT
251 CAACTCGAT
*
14704090 GATTTAATATCACAATTGATATTATTAAGGCTTGTTGATTTATGATGATAGCCTAAGTTTATTGA
1 GATTTAATATCACAATTGATATTATTAAGGCTTGTTGATTTAT-ATCATAGCCTAAGTTTATTGA
* *
14704155 TTTACGAACCTGAATAATCTTCTT
65 TTTACGATCATGAATAATCTTCTT
14704179 AAGTTGATTT
Statistics
Matches: 283, Mismatches: 52, Indels: 27
0.78 0.14 0.07
Matches are distributed among these distances:
258 6 0.02
259 49 0.17
260 221 0.78
261 7 0.02
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (259 bp):
GATTTAATATCACAATTGATATTATTAAGGCTTGTTGATTTATATCATAGCCTAAGTTTATTGAT
TTACGATCATGAATAATCTTCTTTGAGATAACTGATTTACTATCACTACTCCAAACACTTCACTG
ATTTAAGATCACAGCTGATATTATTAAAGCTCACTGATTTACGATCACAGTCTAAGTTCATTATT
TTACTATCATGAACAATCTTCTCTAAGTTAGCATACTTGCTAACGCTACTCCAAACAACTCGAT
Found at i:14724442 original size:3 final size:3
Alignment explanation
Indices: 14724434--14724462 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
14724424 ACAAGCTATG
14724434 GTA GTA GTA GTA GTA GTA GTA GTA GTA GT
1 GTA GTA GTA GTA GTA GTA GTA GTA GTA GT
14724463 TTAGAGGAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.34, T:0.34
Consensus pattern (3 bp):
GTA
Found at i:14731599 original size:14 final size:14
Alignment explanation
Indices: 14731582--14731627 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
14731572 GCCATTTTTA
* *
14731582 TTTTTATTTTTATT
1 TTTTTAATTTAATT
14731596 TTTTTAATTTAATT
1 TTTTTAATTTAATT
*
14731610 TTTTAAATTCTAATT
1 TTTTTAATT-TAATT
14731625 TTT
1 TTT
14731628 CTTTTGTTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
14 20 0.71
15 8 0.29
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTTTAATTTAATT
Found at i:14741013 original size:25 final size:26
Alignment explanation
Indices: 14740985--14741039 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
14740975 CTTCTGAGCC
*
14740985 ATATAAAAG-GAAGCTCAATCAAGCT
1 ATATAAAAGAGAAGCTCAATCAAGAT
**
14741010 ATAT-ATCGAGAAGCTCAATCAAGAT
1 ATATAAAAGAGAAGCTCAATCAAGAT
14741035 ATATA
1 ATATA
14741040 TCGGGAAGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
24 2 0.08
25 23 0.92
ACGTcount: A:0.47, C:0.15, G:0.15, T:0.24
Consensus pattern (26 bp):
ATATAAAAGAGAAGCTCAATCAAGAT
Found at i:14741040 original size:25 final size:25
Alignment explanation
Indices: 14740994--14741047 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
14740984 CATATAAAAG
*
14740994 GAAGCTCAATCAAGCTATATATCGA
1 GAAGCTCAATCAAGATATATATCGA
*
14741019 GAAGCTCAATCAAGATATATATCGG
1 GAAGCTCAATCAAGATATATATCGA
14741044 GAAG
1 GAAG
14741048 TTCATGCGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.41, C:0.17, G:0.20, T:0.22
Consensus pattern (25 bp):
GAAGCTCAATCAAGATATATATCGA
Found at i:14749663 original size:45 final size:42
Alignment explanation
Indices: 14749547--14749707 Score: 121
Period size: 45 Copynumber: 3.7 Consensus size: 42
14749537 GATCTTCAGT
* * * *
14749547 CTGCTCTACTGCAACTTCAGGGAGATAAGACTTG-TAACTTCAAC
1 CTGCTCCACTGCAACTTCAGAGAGATAAGA-TTGCTATCATC--C
* * * * * *
14749591 CTGCCCCACTACAACCTCAGGGGGATAAGATTCGCTATCCTCGGC
1 CTGCTCCACTGCAACTTCAGAGAGATAAGATT-GCTATCATC--C
*
14749636 CTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATAAT--
1 CTGCTCCACTGCAACTTCAGAGAGATAAGA-TTGCTATCATCC
* *
14749677 CTACTCTACTGCAACTTCAGAGAGATAAGAT
1 CTGCTCCACTGCAACTTCAGAGAGATAAGAT
14749708 CTGTAATTTA
Statistics
Matches: 96, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
40 1 0.01
41 28 0.29
43 2 0.02
44 26 0.27
45 37 0.39
46 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (42 bp):
CTGCTCCACTGCAACTTCAGAGAGATAAGATTGCTATCATCC
Found at i:14750527 original size:45 final size:45
Alignment explanation
Indices: 14750476--14750565 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
14750466 AGCTTGAAAT
*
14750476 GAATAAATTAATCAAGATAGAAAATTTTGCTAAAATACAAAATGA
1 GAATAAATTAATCAAGATAGAAAATTTTGCCAAAATACAAAATGA
* *
14750521 GAATAAATTAATCAAGATAGCACATTTTGCCAAAATACAAAATGA
1 GAATAAATTAATCAAGATAGAAAATTTTGCCAAAATACAAAATGA
14750566 ATGAAATGGA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.53, C:0.10, G:0.11, T:0.26
Consensus pattern (45 bp):
GAATAAATTAATCAAGATAGAAAATTTTGCCAAAATACAAAATGA
Found at i:14758000 original size:19 final size:20
Alignment explanation
Indices: 14757978--14758022 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
14757968 TTATGAAACT
*
14757978 TAATGCATATG-ATGACATG
1 TAATGCAGATGAATGACATG
*
14757997 TAATGCAGATGAATGAGATG
1 TAATGCAGATGAATGACATG
14758017 -AATGCA
1 TAATGCA
14758023 AAAAAATAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.27
Consensus pattern (20 bp):
TAATGCAGATGAATGACATG
Found at i:14767943 original size:21 final size:22
Alignment explanation
Indices: 14767919--14767962 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
14767909 ACTATATATT
14767919 AATTCAATC-ATAT-AACATTTC
1 AATTCAATCAAT-TCAACATTTC
*
14767940 AATTCACTCAATTCAACATTTC
1 AATTCAATCAATTCAACATTTC
14767962 A
1 A
14767963 TTCTCATTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.41, C:0.23, G:0.00, T:0.36
Consensus pattern (22 bp):
AATTCAATCAATTCAACATTTC
Found at i:14768345 original size:18 final size:19
Alignment explanation
Indices: 14768303--14768349 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
14768293 GTTCCCAACT
14768303 CATTTCACAATTTCATATCC
1 CATTTCAC-ATTTCATATCC
14768323 CATTTCACATTTCACT-T-C
1 CATTTCACATTTCA-TATCC
14768341 CATTTCACA
1 CATTTCACA
14768350 CCATTTGCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 10 0.38
19 7 0.27
20 9 0.35
ACGTcount: A:0.28, C:0.32, G:0.00, T:0.40
Consensus pattern (19 bp):
CATTTCACATTTCATATCC
Found at i:14772076 original size:42 final size:43
Alignment explanation
Indices: 14771975--14772082 Score: 146
Period size: 42 Copynumber: 2.5 Consensus size: 43
14771965 ATGCCAACAT
* * * * *
14771975 CCCAGACGTGGTCTTACATGTAATCAAATAATGATGCCACTGT
1 CCCAGACATGGTCTTACACGTAATCAAATAATGACGCCAATGC
* *
14772018 CCCAGACAGGGTCTTACACGTAATCATAT-ATGACGCCAATGC
1 CCCAGACATGGTCTTACACGTAATCAAATAATGACGCCAATGC
14772060 CCCAGACATGGTCTTACACGTAA
1 CCCAGACATGGTCTTACACGTAA
14772083 ATCTTAAATT
Statistics
Matches: 57, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 32 0.56
43 25 0.44
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (43 bp):
CCCAGACATGGTCTTACACGTAATCAAATAATGACGCCAATGC
Found at i:14776930 original size:16 final size:16
Alignment explanation
Indices: 14776903--14776937 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
14776893 AATTTGAATC
14776903 TAATAATAAATT-ATT
1 TAATAATAAATTAATT
14776918 TAATAAGTAAATTAATT
1 TAATAA-TAAATTAATT
14776935 TAA
1 TAA
14776938 ATATGGTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.33
16 6 0.33
17 6 0.33
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (16 bp):
TAATAATAAATTAATT
Found at i:14778028 original size:19 final size:19
Alignment explanation
Indices: 14777982--14778037 Score: 94
Period size: 21 Copynumber: 2.8 Consensus size: 19
14777972 AATCTTCAAG
14777982 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14778001 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
14778022 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
14778038 AGATATGATT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
19 16 0.46
21 19 0.54
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14778059 original size:23 final size:22
Alignment explanation
Indices: 14777982--14778060 Score: 78
Period size: 19 Copynumber: 3.7 Consensus size: 22
14777972 AATCTTCAAG
*
14777982 GATATGCAATCTTAG-ATATGAT
1 GATATGCAATCTTAGAAGAT-AT
14778004 -ATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
14778022 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
14778044 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
14778061 GATTTAATTT
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
18 2 0.04
19 15 0.31
21 12 0.24
22 8 0.16
23 12 0.24
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:14778789 original size:23 final size:22
Alignment explanation
Indices: 14778760--14778803 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
14778750 ATAATTCACA
*
14778760 TACATATATATTTTTCTTATATG
1 TACATATATATATTT-TTATATG
14778783 TACATATATATATTTTTATAT
1 TACATATATATATTTTTATAT
14778804 TTTATAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.57
Consensus pattern (22 bp):
TACATATATATATTTTTATATG
Found at i:14778986 original size:6 final size:6
Alignment explanation
Indices: 14778977--14779047 Score: 115
Period size: 6 Copynumber: 11.8 Consensus size: 6
14778967 ATCTTTTCAT
* * *
14778977 TATTAT TATTAT TATTAT TATTAG TATTAG TATTAG TATTAG TATTAG
1 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG
14779025 TATTAG TATTAG TATTAG TATTA
1 TATTAG TATTAG TATTAG TATTA
14779048 TTTTTGTTCT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 64 1.00
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.55
Consensus pattern (6 bp):
TATTAG
Found at i:14783203 original size:6 final size:6
Alignment explanation
Indices: 14783202--14783238 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
14783192 CAAAAAAGAA
*
14783202 AAAAAG AAAAAA AAAAAG AAAAA- AAAAAG AAAAAG AA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AA
14783239 CAGAAAAATG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 5 0.18
6 23 0.82
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:14783206 original size:8 final size:8
Alignment explanation
Indices: 14783193--14783235 Score: 63
Period size: 8 Copynumber: 5.5 Consensus size: 8
14783183 TATGAGTTTC
14783193 AAAAAAGA
1 AAAAAAGA
14783201 AAAAAAGA
1 AAAAAAGA
14783209 AAAAAA-A
1 AAAAAAGA
14783216 AAAGAAA-A
1 AAA-AAAGA
14783224 AAAAAAGA
1 AAAAAAGA
14783232 AAAA
1 AAAA
14783236 GAACAGAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
7 7 0.21
8 26 0.79
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (8 bp):
AAAAAAGA
Found at i:14783217 original size:12 final size:12
Alignment explanation
Indices: 14783195--14783235 Score: 66
Period size: 12 Copynumber: 3.4 Consensus size: 12
14783185 TGAGTTTCAA
14783195 AAAAGAAAAAAAG
1 AAAA-AAAAAAAG
14783208 AAAAAAAAAAAG
1 AAAAAAAAAAAG
14783220 -AAAAAAAAAAG
1 AAAAAAAAAAAG
14783231 AAAAA
1 AAAAA
14783236 GAACAGAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.41
12 12 0.44
13 4 0.15
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAG
Found at i:14783218 original size:20 final size:20
Alignment explanation
Indices: 14783193--14783246 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 20
14783183 TATGAGTTTC
14783193 AAAAAAGAAAAAAAGAAA-AA
1 AAAAAAGAAAAAAA-AAAGAA
14783213 AAAAAAGAAAAAAAAAAGAA
1 AAAAAAGAAAAAAAAAAGAA
14783233 AAAGAACAGAAAAA
1 AAA-AA-AGAAAAA
14783247 TGAGAGGCCA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
19 3 0.10
20 19 0.61
21 2 0.06
22 7 0.23
ACGTcount: A:0.87, C:0.02, G:0.11, T:0.00
Consensus pattern (20 bp):
AAAAAAGAAAAAAAAAAGAA
Found at i:14783246 original size:1 final size:1
Alignment explanation
Indices: 14783193--14783235 Score: 50
Period size: 1 Copynumber: 43.0 Consensus size: 1
14783183 TATGAGTTTC
* * * *
14783193 AAAAAAGAAAAAAAGAAAAAAAAAAAGAAAAAAAAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14783236 GAACAGAAAA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (1 bp):
A
Found at i:14783246 original size:12 final size:11
Alignment explanation
Indices: 14783200--14783246 Score: 67
Period size: 11 Copynumber: 4.2 Consensus size: 11
14783190 TTCAAAAAAG
14783200 AAAAAAAGAAAA
1 AAAAAAAG-AAA
14783212 AAAAAAAGAAA
1 AAAAAAAGAAA
14783223 AAAAAAAGAAA
1 AAAAAAAGAAA
* *
14783234 AAGAACAGAAA
1 AAAAAAAGAAA
14783245 AA
1 AA
14783247 TGAGAGGCCA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
11 25 0.76
12 8 0.24
ACGTcount: A:0.87, C:0.02, G:0.11, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:14784963 original size:32 final size:32
Alignment explanation
Indices: 14784917--14784987 Score: 97
Period size: 32 Copynumber: 2.2 Consensus size: 32
14784907 TCTAAATTTC
* ** *
14784917 TAATCAATCCTAATTTCTTTGAGGGTTTGTAT
1 TAATCAATACTAATTTCTTCAAGGATTTGTAT
*
14784949 TAATCAATATTAATTTCTTCAAGGATTTGTAT
1 TAATCAATACTAATTTCTTCAAGGATTTGTAT
14784981 TAATCAA
1 TAATCAA
14784988 CCTCTAAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.45
Consensus pattern (32 bp):
TAATCAATACTAATTTCTTCAAGGATTTGTAT
Found at i:14788390 original size:17 final size:17
Alignment explanation
Indices: 14788368--14788403 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
14788358 CCTTTTGCTG
14788368 TAATTTGAAATATGAGT
1 TAATTTGAAATATGAGT
14788385 TAATTTGAAATATGAGT
1 TAATTTGAAATATGAGT
14788402 TA
1 TA
14788404 TATTAAGTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.17, T:0.42
Consensus pattern (17 bp):
TAATTTGAAATATGAGT
Found at i:14789669 original size:91 final size:91
Alignment explanation
Indices: 14789399--14789654 Score: 473
Period size: 91 Copynumber: 2.8 Consensus size: 91
14789389 TTAAATGTAC
14789399 AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAATTCATATAA
1 AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAATTCATATAA
14789464 GAAAATTTATTATCAAGAATTTTATG
66 GAAAATTTATTATCAAGAATTTTATG
14789490 AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAATTCATATAA
1 AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAATTCATATAA
14789555 GAAAATTTATTATCAAGAATTTTATG
66 GAAAATTTATTATCAAGAATTTTATG
* *
14789581 AAA-T-TATAT-ATTATTAAATTATATTTAATAATAATTATTTTAAAATATATAAATTCATATAA
1 AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAATTCATATAA
14789643 GAAAATTTATTA
66 GAAAATTTATTA
14789655 GGTATAATTA
Statistics
Matches: 163, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
88 63 0.39
89 5 0.03
90 1 0.01
91 94 0.58
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.47
Consensus pattern (91 bp):
AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAATTCATATAA
GAAAATTTATTATCAAGAATTTTATG
Found at i:14789721 original size:54 final size:54
Alignment explanation
Indices: 14789659--14789847 Score: 155
Period size: 54 Copynumber: 3.3 Consensus size: 54
14789649 TTATTAGGTA
14789659 TAATTATTTTAAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAT
1 TAATTATTTTAAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAT
* * * * **
14789713 TAATTATTTCAAATTATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATA
1 TAATTATTTTAAATT-T-TATTA-A--ATCATATATT-TTA-ATTA--AAA-T-ATAT-TTAATA
14789778 T
54 T
* * * *
14789779 TAATTA-TTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAA
1 TAATTATTTTA-AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAT
*
14789833 TAATTATGTTAAATT
1 TAATTATTTTAAATT
14789848 ATCTATATTA
Statistics
Matches: 104, Mismatches: 17, Indels: 28
0.70 0.11 0.19
Matches are distributed among these distances:
54 28 0.27
55 7 0.07
56 5 0.05
57 3 0.03
59 13 0.12
60 4 0.04
61 12 0.12
63 4 0.04
64 5 0.05
65 8 0.08
66 15 0.14
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.51
Consensus pattern (54 bp):
TAATTATTTTAAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAT
Found at i:14789734 original size:59 final size:58
Alignment explanation
Indices: 14789671--14789849 Score: 152
Period size: 59 Copynumber: 3.0 Consensus size: 58
14789661 ATTATTTTAA
14789671 ATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTAT
1 ATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTAT
* * * ** *
14789730 ATTTTA-TAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTAATTA-TT-AA-GA
1 ATTTTATTA-AATCATATATT-TTA-ATTA--AAA-T-ATAT-TTAATATTAATTATTTAAATTA
14789791 -
58 T
* * *
14789791 ATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTAT
1 ATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTAT
14789850 CTATATTATG
Statistics
Matches: 91, Mismatches: 15, Indels: 28
0.68 0.11 0.21
Matches are distributed among these distances:
54 10 0.11
55 4 0.04
56 3 0.03
57 4 0.04
58 3 0.03
59 19 0.21
60 4 0.04
61 18 0.20
62 3 0.03
63 5 0.05
64 1 0.01
65 6 0.07
66 11 0.12
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (58 bp):
ATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTAT
Found at i:14789787 original size:37 final size:35
Alignment explanation
Indices: 14789746--14789915 Score: 109
Period size: 38 Copynumber: 4.7 Consensus size: 35
14789736 TAGTATCATA
14789746 TATTATGATTTTAGTAAATTCATATAAGAATATTAAT
1 TATTATGATTTTAGTAAATT-ATATAA-AATATTAAT
* * *
14789783 TATTAAGAATTTTATTAAATTATAT---ATTTTAAT
1 TATTATG-ATTTTAGTAAATTATATAAAATATTAAT
* * * *
14789816 TATAAT-ATATTTAATAATAATTATGTTAAATTATCT-A-
1 TATTATGAT-TTTAGT-A-AATTAT-ATAAAATAT-TAAT
*
14789853 TATTATGATTTGAGTAAATTCATATAAGAATATTAAT
1 TATTATGATTTTAGTAAATT-ATATAA-AATATTAAT
* *
14789890 TATTAATAATTTTATTAAATTATATA
1 TATT-ATGATTTTAGTAAATTATATA
14789916 TTTTAATAAT
Statistics
Matches: 101, Mismatches: 17, Indels: 30
0.68 0.11 0.20
Matches are distributed among these distances:
31 2 0.02
32 5 0.05
33 12 0.12
34 6 0.06
35 9 0.09
36 8 0.08
37 28 0.28
38 30 0.30
39 1 0.01
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (35 bp):
TATTATGATTTTAGTAAATTATATAAAATATTAAT
Found at i:14789825 original size:16 final size:16
Alignment explanation
Indices: 14789804--14789849 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
14789794 TTATTAAATT
14789804 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
14789820 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
14789835 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
14789850 CTATATTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:14789856 original size:107 final size:109
Alignment explanation
Indices: 14789739--14789937 Score: 348
Period size: 107 Copynumber: 1.8 Consensus size: 109
14789729 TATTTTATAG
*
14789739 TATCATATATTATGATTTTAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
*
14789804 ATATATTTTAATTATAA-TATATTTAATAATAATTATGTTAAAT
66 ATATATTTTAATAATAATTATATTTAATAATAATTATGTTAAAT
*
14789847 TATC-TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAATAATTTTATTAAATT
1 TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
*
14789911 ATATATTTTAATAATAATTATGTTTAA
66 ATATATTTTAATAATAATTATATTTAA
14789938 ATATGATTAA
Statistics
Matches: 86, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
107 74 0.86
108 12 0.14
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (109 bp):
TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
ATATATTTTAATAATAATTATATTTAATAATAATTATGTTAAAT
Found at i:14790172 original size:16 final size:16
Alignment explanation
Indices: 14790151--14790188 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
14790141 TTAATTTGTT
14790151 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
14790167 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
14790183 ATTACA
1 ATTACA
14790189 GCGAACCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.29, C:0.34, G:0.00, T:0.37
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:14790337 original size:38 final size:38
Alignment explanation
Indices: 14790295--14790384 Score: 119
Period size: 38 Copynumber: 2.4 Consensus size: 38
14790285 GAAACAGTAG
* *
14790295 ACATGCTTAACATGTAATCAATTCAACAGT-AGCAATAA
1 ACATGCTTAACATGTAATCAATTAAACAATCA-CAATAA
* *
14790333 ACATGCTTAACATGTATTCAATTAAACAATCACAGTAA
1 ACATGCTTAACATGTAATCAATTAAACAATCACAATAA
*
14790371 ACATGCTTCACATG
1 ACATGCTTAACATG
14790385 CTTTCAGTTC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
38 45 0.98
39 1 0.02
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.28
Consensus pattern (38 bp):
ACATGCTTAACATGTAATCAATTAAACAATCACAATAA
Found at i:14796274 original size:18 final size:19
Alignment explanation
Indices: 14796240--14796275 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
14796230 GTCTCATGCC
*
14796240 ACAGTTCAAATAAAACATT
1 ACAGTTCAAACAAAACATT
14796259 ACAGTTC-AACAAAACAT
1 ACAGTTCAAACAAAACAT
14796276 AAATTATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.53, C:0.19, G:0.06, T:0.22
Consensus pattern (19 bp):
ACAGTTCAAACAAAACATT
Found at i:14796933 original size:38 final size:38
Alignment explanation
Indices: 14796882--14797048 Score: 149
Period size: 38 Copynumber: 4.4 Consensus size: 38
14796872 AAAAACAATG
*
14796882 GACATGCTTAACATGTAATCAGTTCAAC-GATAGCATTA
1 GACATGCTTAACATGTAATCAGTTCAACAG-TAGCAGTA
* * *
14796920 GACATGCTTAACATGTATTTAGTTCAACAGTTGCAGTA
1 GACATGCTTAACATGTAATCAGTTCAACAGTAGCAGTA
** * * *
14796958 GACATGCTTAACATGTTTTCAGGTCAACAGTCGTAGTA
1 GACATGCTTAACATGTAATCAGTTCAACAGTAGCAGTA
* * * * * *
14796996 GGCATGTTTCACATGCT-TTCAGGTCAACAGTCGCAGTA
1 GACATGCTTAACATG-TAATCAGTTCAACAGTAGCAGTA
* *
14797034 GGCATGCTTCACATG
1 GACATGCTTAACATG
14797049 CTTTCAAGTC
Statistics
Matches: 113, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
38 111 0.98
39 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (38 bp):
GACATGCTTAACATGTAATCAGTTCAACAGTAGCAGTA
Found at i:14797049 original size:38 final size:38
Alignment explanation
Indices: 14796943--14797062 Score: 177
Period size: 38 Copynumber: 3.2 Consensus size: 38
14796933 TGTATTTAGT
* * * *
14796943 TCAACAGTTGCAGTAGACATGCTTAACATGTTTTCAGG
1 TCAACAGTCGCAGTAGGCATGCTTCACATGCTTTCAGG
* *
14796981 TCAACAGTCGTAGTAGGCATGTTTCACATGCTTTCAGG
1 TCAACAGTCGCAGTAGGCATGCTTCACATGCTTTCAGG
*
14797019 TCAACAGTCGCAGTAGGCATGCTTCACATGCTTTCAAG
1 TCAACAGTCGCAGTAGGCATGCTTCACATGCTTTCAGG
14797057 TCAACA
1 TCAACA
14797063 ATCGTAGTGT
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 73 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (38 bp):
TCAACAGTCGCAGTAGGCATGCTTCACATGCTTTCAGG
Found at i:14810116 original size:44 final size:44
Alignment explanation
Indices: 14810017--14810118 Score: 132
Period size: 44 Copynumber: 2.3 Consensus size: 44
14810007 AGAACCTACT
14810017 TTTGGCTATGGATTACACAACAACTAACCACAGATGGAATCTATC
1 TTTGGCTATGGA-TACACAACAACTAACCACAGATGGAATCTATC
* ** * * * *
14810062 TCTGATTATGGATACACAACAAGTACCCGCAGATGGAATCTGTC
1 TTTGGCTATGGATACACAACAACTAACCACAGATGGAATCTATC
14810106 TTTGGCTATGGAT
1 TTTGGCTATGGAT
14810119 GTACAGCAAA
Statistics
Matches: 47, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
44 38 0.81
45 9 0.19
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (44 bp):
TTTGGCTATGGATACACAACAACTAACCACAGATGGAATCTATC
Found at i:14812608 original size:16 final size:16
Alignment explanation
Indices: 14812574--14812618 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
14812564 AATATTATTT
14812574 ATTAATTAA--TTCTA
1 ATTAATTAATTTTCTA
14812588 ATTAATTAATTTTCTA
1 ATTAATTAATTTTCTA
* *
14812604 CTTAAATAATTTTCT
1 ATTAATTAATTTTCT
14812619 CAACCAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
14 9 0.33
16 18 0.67
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (16 bp):
ATTAATTAATTTTCTA
Found at i:14813710 original size:63 final size:63
Alignment explanation
Indices: 14813611--14813730 Score: 240
Period size: 63 Copynumber: 1.9 Consensus size: 63
14813601 TGCTCAAGAC
14813611 AAATCATCTACCAATTGGACTTGATAAATGACATAGTAGACTTTCAATTAGTTTGCTTGAGCA
1 AAATCATCTACCAATTGGACTTGATAAATGACATAGTAGACTTTCAATTAGTTTGCTTGAGCA
14813674 AAATCATCTACCAATTGGACTTGATAAATGACATAGTAGACTTTCAATTAGTTTGCT
1 AAATCATCTACCAATTGGACTTGATAAATGACATAGTAGACTTTCAATTAGTTTGCT
14813731 AATTTCTGAT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 57 1.00
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (63 bp):
AAATCATCTACCAATTGGACTTGATAAATGACATAGTAGACTTTCAATTAGTTTGCTTGAGCA
Found at i:14814964 original size:64 final size:64
Alignment explanation
Indices: 14814863--14814995 Score: 187
Period size: 64 Copynumber: 2.1 Consensus size: 64
14814853 TAAAAGCCCT
* * *
14814863 CAAATATGCATTTAAAAAATCCAATAGTTTTAGTCAAAATATGCCAAT-CAAATAAGATAAAATA
1 CAAATATGCATTTAAAAAATCCAACAGTTTCAGTCAAAATATGCC-ATCCAAATAAGATAAAACA
* * * *
14814927 CAAATATGTATTTAAAAACTCTAACAGTTTCAGTCAAAATATGCCATCCAAATAATATAAAACA
1 CAAATATGCATTTAAAAAATCCAACAGTTTCAGTCAAAATATGCCATCCAAATAAGATAAAACA
14814991 CAAAT
1 CAAAT
14814996 GGCTTGCAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 2 0.03
64 59 0.97
ACGTcount: A:0.50, C:0.15, G:0.07, T:0.28
Consensus pattern (64 bp):
CAAATATGCATTTAAAAAATCCAACAGTTTCAGTCAAAATATGCCATCCAAATAAGATAAAACA
Found at i:14825204 original size:16 final size:16
Alignment explanation
Indices: 14825183--14825250 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
14825173 TTTGGTTCGC
14825183 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
14825199 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
14825215 TGTAATGGATTAGAGG
1 TGTATTGGATTAGAGG
*
14825231 TGTATTGGAATAGAGG
1 TGTATTGGATTAGAGG
14825247 TGTA
1 TGTA
14825251 ATAGCAAATC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:14825290 original size:45 final size:41
Alignment explanation
Indices: 14825231--14825340 Score: 116
Period size: 45 Copynumber: 2.6 Consensus size: 41
14825221 GGATTAGAGG
*
14825231 TGTATTGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGG-T
* * ***
14825273 GAATGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGT
1 ---TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
14825316 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
14825341 TAATGGAAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
39 20 0.36
40 2 0.04
43 1 0.02
44 11 0.20
45 22 0.39
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (41 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
Found at i:14825503 original size:16 final size:16
Alignment explanation
Indices: 14825466--14825507 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
14825456 TTAATCATAT
*
14825466 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
14825482 TT-AAATATATTATAA
1 TTAAAATATATTATAA
14825497 TTAAAATATAT
1 TTAAAATATAT
14825508 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:14825514 original size:14 final size:15
Alignment explanation
Indices: 14825475--14825516 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
14825465 TTTAAACATA
*
14825475 ATTATTATTAAATAT
1 ATTATAATTAAATAT
14825490 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
14825504 A-TATAATTTAATA
1 ATTATAATTAAATA
14825517 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:14825566 original size:61 final size:61
Alignment explanation
Indices: 14825501--14825688 Score: 208
Period size: 61 Copynumber: 3.1 Consensus size: 61
14825491 TTATAATTAA
14825501 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
* * * * * * * * * *
14825562 AATATATGATACT-ATAAAA-TATAAATTAA-C-ATAATTATTAT-TAAATATA-TTATAATTAA
1 AATATATAAT-TTAATAAAATTCTTAA-TAATCAAT-ATTCTTATATGAATTTACTCA-AATCAT
14825621 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
14825682 AATATAT
1 AATATAT
14825689 GATACTATAA
Statistics
Matches: 97, Mismatches: 20, Indels: 20
0.71 0.15 0.15
Matches are distributed among these distances:
58 3 0.03
59 30 0.31
60 24 0.25
61 37 0.38
62 3 0.03
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
Found at i:14825614 original size:120 final size:120
Alignment explanation
Indices: 14825469--14825698 Score: 460
Period size: 120 Copynumber: 1.9 Consensus size: 120
14825459 ATCATATTTA
14825469 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
14825534 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
14825589 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
14825654 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAA
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAA
14825699 TTTACTCAAA
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 110 1.00
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:14825634 original size:14 final size:15
Alignment explanation
Indices: 14825585--14825636 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
14825575 ATAAAATATA
14825585 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
14825600 TATTAAATATATTAT
1 AATTAAATATATTAT
14825615 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
14825628 AATTTAATA
1 AATTAAATA
14825637 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:14825687 original size:59 final size:59
Alignment explanation
Indices: 14825504--14825687 Score: 175
Period size: 59 Copynumber: 3.1 Consensus size: 59
14825494 TAATTAAAAT
14825504 ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
1 ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
* * * * * * *
14825563 ATAT-ATGATACTATAAAA-TATAAATTAA-CATAATTATTATTAAAT-ATATTATAATTAAA--
1 ATATAAT-TTA--ATAAAATTCTTAA-TAATC--AA-TATTCTTATATGA-ATT-TACTCAAATC
14825622 AT-
57 ATA
14825624 ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
1 ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
14825683 ATATA
1 ATATA
14825688 TGATACTATA
Statistics
Matches: 95, Mismatches: 14, Indels: 32
0.67 0.10 0.23
Matches are distributed among these distances:
56 6 0.06
57 12 0.13
58 7 0.07
59 20 0.21
60 10 0.11
61 15 0.16
62 7 0.07
63 12 0.13
64 6 0.06
ACGTcount: A:0.49, C:0.08, G:0.02, T:0.42
Consensus pattern (59 bp):
ATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATA
Found at i:14827439 original size:20 final size:20
Alignment explanation
Indices: 14827416--14827454 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
14827406 CATTGAGATT
14827416 TCGAAACATCTTGCATCAGG
1 TCGAAACATCTTGCATCAGG
14827436 TCGAAACATCTTGCATCAG
1 TCGAAACATCTTGCATCAG
14827455 AACCAAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (20 bp):
TCGAAACATCTTGCATCAGG
Found at i:14836785 original size:34 final size:38
Alignment explanation
Indices: 14836718--14836788 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 38
14836708 ATTTAGTCCT
14836718 TTTCATATTTTTAATTAATTTCAATAATGTAATTATTG
1 TTTCATATTTTTAATTAATTTCAATAATGTAATTATTG
14836756 TTTC-TATTTTT-A-TAATTT-ACAT-ATGTAATTATT
1 TTTCATATTTTTAATTAATTTCA-ATAATGTAATTATT
14836789 TTTTTATAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
34 12 0.38
35 8 0.25
36 1 0.03
37 7 0.22
38 4 0.12
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (38 bp):
TTTCATATTTTTAATTAATTTCAATAATGTAATTATTG
Found at i:14836826 original size:35 final size:34
Alignment explanation
Indices: 14836776--14836861 Score: 86
Period size: 34 Copynumber: 2.5 Consensus size: 34
14836766 TATAATTTAC
14836776 ATATGTAATTATTTTTTTATA-ATCTATATATATATGT
1 ATATGT-A-TATTTTTTTATATATCTATATATATA--T
* * *
14836813 ATATGTCTA-TTTTTTATATATGTATATGTATAT
1 ATATGTATATTTTTTTATATATCTATATATATAT
*
14836846 ATATTTATATTTTTTT
1 ATATGTATATTTTTTT
14836862 TCTAACGAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
33 8 0.19
34 15 0.36
35 13 0.31
37 6 0.14
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.60
Consensus pattern (34 bp):
ATATGTATATTTTTTTATATATCTATATATATAT
Found at i:14836831 original size:23 final size:24
Alignment explanation
Indices: 14836804--14836855 Score: 79
Period size: 23 Copynumber: 2.2 Consensus size: 24
14836794 ATAATCTATA
* *
14836804 TATATATGTATATGTCTAT-TTTT
1 TATATATGTATATGTATATATATT
14836827 TATATATGTATATGTATATATATT
1 TATATATGTATATGTATATATATT
14836851 TATAT
1 TATAT
14836856 TTTTTTTCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 18 0.69
24 8 0.31
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.58
Consensus pattern (24 bp):
TATATATGTATATGTATATATATT
Found at i:14836839 original size:33 final size:34
Alignment explanation
Indices: 14836788--14836860 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 34
14836778 ATGTAATTAT
* * *
14836788 TTTTTTATAATCTATATATATATGTATATGTCTA
1 TTTTTTATAATATATATATATATATATATGTATA
* * *
14836822 TTTTTTAT-ATATGTATATGTATATATATTTATA
1 TTTTTTATAATATATATATATATATATATGTATA
14836855 TTTTTT
1 TTTTTT
14836861 TTCTAACGAA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
33 25 0.76
34 8 0.24
ACGTcount: A:0.30, C:0.03, G:0.05, T:0.62
Consensus pattern (34 bp):
TTTTTTATAATATATATATATATATATATGTATA
Found at i:14836904 original size:12 final size:12
Alignment explanation
Indices: 14836879--14836913 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
14836869 AATATTTTTC
* *
14836879 TATATTTATATA
1 TATATCTATGTA
14836891 TATATCTATGTA
1 TATATCTATGTA
14836903 TATATCTATGT
1 TATATCTATGT
14836914 TTTTTTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.54
Consensus pattern (12 bp):
TATATCTATGTA
Found at i:14840950 original size:12 final size:12
Alignment explanation
Indices: 14840933--14840958 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14840923 AAGATTCAAT
14840933 AAAAAATGATGG
1 AAAAAATGATGG
14840945 AAAAAATGATGG
1 AAAAAATGATGG
14840957 AA
1 AA
14840959 TCTCAGGGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.23, T:0.15
Consensus pattern (12 bp):
AAAAAATGATGG
Found at i:14843597 original size:7 final size:7
Alignment explanation
Indices: 14843582--14843629 Score: 64
Period size: 7 Copynumber: 7.0 Consensus size: 7
14843572 CGTGATGTGA
14843582 AAAAATG
1 AAAAATG
*
14843589 AAGAATG
1 AAAAATG
14843596 -AAAATG
1 AAAAATG
14843602 AAAAATG
1 AAAAATG
14843609 AAAAATG
1 AAAAATG
14843616 AAAAA-G
1 AAAAATG
14843622 TAAAAATG
1 -AAAAATG
14843630 GAAAGGCTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
6 6 0.17
7 29 0.81
8 1 0.03
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.15
Consensus pattern (7 bp):
AAAAATG
Found at i:14843605 original size:20 final size:21
Alignment explanation
Indices: 14843583--14843629 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
14843573 GTGATGTGAA
* *
14843583 AAAATGAAGAATGAAAATG-A
1 AAAATGAAAAATGAAAAAGTA
14843603 AAAATGAAAAATGAAAAAGTA
1 AAAATGAAAAATGAAAAAGTA
14843624 AAAATG
1 AAAATG
14843630 GAAAGGCTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.68, C:0.00, G:0.17, T:0.15
Consensus pattern (21 bp):
AAAATGAAAAATGAAAAAGTA
Found at i:14844938 original size:88 final size:88
Alignment explanation
Indices: 14844838--14845078 Score: 326
Period size: 88 Copynumber: 2.7 Consensus size: 88
14844828 TATCTCTCTG
*
14844838 AGCAGCAATGGAGTAGGTT-AAAACTAGCAGATCTTGTCTTCCTGTATCAGCAGCGAAGTAGATC
1 AGCAGCAGTGGAGTAGGTTGAAAA-TAGCAGATCTTGTCTTCCTGTATCAGCAGCGAAGTAGATC
* *
14844902 GAAGATACCAGCCTTGTCTTCTTC
65 GAAGATACCAGCCTTGTCTCCCTC
** * *
14844926 AGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTGGATCT
1 AGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATCAGCAGCGAAGTAGATCG
*
14844991 AAGATACCAGCCTTGTCTCCCTG
66 AAGATACCAGCCTTGTCTCCCTC
* * * *
14845014 AGCAGCAGTAGAATAGGTTGAAAAT-GACAGATCTTGCCTTCCTGTA-CTAGCAGCAAAGTAGAT
1 AGCAGCAGTGGAGTAGGTTGAAAATAG-CAGATCTTGTCTTCCTGTATC-AGCAGCGAAGTAGAT
14845077 CG
64 CG
14845079 GAGACACCCC
Statistics
Matches: 134, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
87 1 0.01
88 129 0.96
89 4 0.03
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (88 bp):
AGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATCAGCAGCGAAGTAGATCG
AAGATACCAGCCTTGTCTCCCTC
Found at i:14844962 original size:44 final size:44
Alignment explanation
Indices: 14844834--14844971 Score: 131
Period size: 43 Copynumber: 3.1 Consensus size: 44
14844824 GCTTTATCTC
*
14844834 TCTG-AGCAGCAATGGAGTAGGTT-AAAACTAGCAGATCTTGTCT
1 TCTGTAGCAGCAGTGGAGTAGGTTGAAAA-TAGCAGATCTTGTCT
* * * * * * * *
14844877 TCCTGTATCAGCAGCGAAGTAGATCGAAGATACCAG-CCTTGTCT
1 T-CTGTAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCT
14844921 TCT-TCAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCT
1 TCTGT-AGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCT
14844965 TCCTGTA
1 T-CTGTA
14844972 TTGGCAGCGA
Statistics
Matches: 71, Mismatches: 17, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
42 1 0.01
43 26 0.37
44 19 0.27
45 21 0.30
46 4 0.06
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (44 bp):
TCTGTAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCT
Found at i:14845006 original size:44 final size:44
Alignment explanation
Indices: 14844870--14845021 Score: 125
Period size: 44 Copynumber: 3.5 Consensus size: 44
14844860 ACTAGCAGAT
* *
14844870 CTTGTCTTCCTGTATCAGCAGCGAAGTAGATCGAAGATACCAGC
1 CTTGTCTTCCTGTATCAGCAGCGAAGTGGATCTAAGATACCAGC
* * * * * *
14844914 CTTGTCTT-CT-TCAGCAGCAGTGGAGTAGG-T-TGAAAATAGCAGAT
1 CTTGTCTTCCTGT-ATCAGCAGCGAAGT-GGATCT-AAGATACCAG-C
**
14844958 CTTGTCTTCCTGTATTGGCAGCGAAGTGGATCTAAGATACCAGC
1 CTTGTCTTCCTGTATCAGCAGCGAAGTGGATCTAAGATACCAGC
* *
14845002 CTTGTCTCCCTG-AGCAGCAG
1 CTTGTCTTCCTGTATCAGCAG
14845022 TAGAATAGGT
Statistics
Matches: 80, Mismatches: 20, Indels: 17
0.68 0.17 0.15
Matches are distributed among these distances:
42 1 0.01
43 27 0.34
44 30 0.38
45 20 0.25
46 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (44 bp):
CTTGTCTTCCTGTATCAGCAGCGAAGTGGATCTAAGATACCAGC
Found at i:14845338 original size:50 final size:50
Alignment explanation
Indices: 14845276--14845654 Score: 191
Period size: 49 Copynumber: 7.7 Consensus size: 50
14845266 TTGGCATTAC
* *
14845276 AGTGGAATAGATTGAAGCCACAACCGCGAATCTTACTTCCCTGGCGATGT
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGATGT
** * * * ** *
14845326 AGTGGAACAGATTGAAGCTGCTACGGTGAATGTTGTTTCCC-GAC-ATTGT
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGA-TGT
* * * * *
14845375 AAT-TAATAGATTGAAGCCACAACGGCGAATCTTACTTCTCTGGCGCTGT
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGATGT
* * * * * * * *
14845424 AGTGGAACAGATTGAAGCTACGATGGTGAATCTT-GTTTCCTGAC-ATTGC
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGA-TGT
* ** * * * * * * * *
14845473 AATTAAAAAGATTGAGGCCACAGCGGTGAATCTTACTTCCTTGGTGGTGC
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGATGT
* * * * ** *
14845523 AGTGGAACAGATTGAAGCTACGACGACGAATCTTATTTCCC-AAC-ATTGC
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGA-TGT
* ** * * * * * *
14845572 AATTAAAAAGATTGAGGCCACAACGGTGAATATTACTT-CTTGGC-AGTGC
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGA-TGT
* *
14845621 AGTGGAACAGATTGAAGCTACGACGGCGAATCTT
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTT
14845655 GTCTTCCCGA
Statistics
Matches: 229, Mismatches: 91, Indels: 19
0.68 0.27 0.06
Matches are distributed among these distances:
48 29 0.13
49 107 0.47
50 93 0.41
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (50 bp):
AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCGATGT
Found at i:14845540 original size:99 final size:98
Alignment explanation
Indices: 14845284--14845677 Score: 493
Period size: 99 Copynumber: 4.0 Consensus size: 98
14845274 ACAGTGGAAT
* * * * * *
14845284 AGATTGAAGCCACAACCGCGAATCTTACTTCCCTGGCGATGTAGTGGAACAGATTGAAGCTGCTA
1 AGATTGAAGCCACAACGGCGAATCTTACTT-CTTGGCGGTGCAGTGGAACAGATTGAAGCTACGA
* * * *
14845349 CGGTGAATGTTGTTTCCCGACATTGTAATT-AAT
65 CGGCGAATCTTGTTTCCCGACATTGCAATTAAAA
* *
14845382 AGATTGAAGCCACAACGGCGAATCTTACTTCTCTGGCGCTGTAGTGGAACAGATTGAAGCTACGA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCT-TGGCGGTGCAGTGGAACAGATTGAAGCTACGA
* * *
14845447 TGGTGAATCTTGTTTCCTGACATTGCAATTAAAA
65 CGGCGAATCTTGTTTCCCGACATTGCAATTAAAA
* * * *
14845481 AGATTGAGGCCACAGCGGTGAATCTTACTTCCTTGGTGGTGCAGTGGAACAGATTGAAGCTACGA
1 AGATTGAAGCCACAACGGCGAATCTTACTT-CTTGGCGGTGCAGTGGAACAGATTGAAGCTACGA
* * *
14845546 CGACGAATCTTATTTCCCAACATTGCAATTAAAA
65 CGGCGAATCTTGTTTCCCGACATTGCAATTAAAA
* * * *
14845580 AGATTGAGGCCACAACGGTGAATATTACTTCTTGGCAGTGCAGTGGAACAGATTGAAGCTACGAC
1 AGATTGAAGCCACAACGGCGAATCTTACTTCTTGGCGGTGCAGTGGAACAGATTGAAGCTACGAC
* *
14845645 GGCGAATCTTGTCTTCCCGACATTACAGTTAAA
66 GGCGAATCTTGT-TTCCCGACATTGCAATTAAA
14845678 TAGAAGAACC
Statistics
Matches: 261, Mismatches: 31, Indels: 7
0.87 0.10 0.02
Matches are distributed among these distances:
97 1 0.00
98 127 0.49
99 131 0.50
100 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (98 bp):
AGATTGAAGCCACAACGGCGAATCTTACTTCTTGGCGGTGCAGTGGAACAGATTGAAGCTACGAC
GGCGAATCTTGTTTCCCGACATTGCAATTAAAA
Found at i:14845627 original size:197 final size:198
Alignment explanation
Indices: 14845284--14845677 Score: 515
Period size: 197 Copynumber: 2.0 Consensus size: 198
14845274 ACAGTGGAAT
* * *
14845284 AGATTGAAGCCACAACCGCGAATCTTACTTCCCTGGCGATGTAGTGGAACAGATTGAAGCTGCTA
1 AGATTGAAGCCACAACCGCGAATCTTACTTCCCTGGCGATGCAGTGGAACAGATTGAAGCTACGA
** * * * * * *
14845349 CGGTGAATGTTGTTTCCCGACATTGTAATTAATAGATTGAAGCCACAACGGCGAATCTTACTTCT
66 CGACGAATCTTATTTCCCAACATTGCAATTAAAAGATTGAAGCCACAACGGCGAATATTACTTCT
* * * * *
14845414 CTGGCGCTGTAGTGGAACAGATTGAAGCTACGATGGTGAATCTTGT-TTCCTGACATTGCAATTA
131 CTGGCGCTGCAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTCTTCCCGACATTACAATTA
14845478 AAA
196 AAA
* * * * * * *
14845481 AGATTGAGGCCACAGCGGTGAATCTTACTTCCTTGGTGGTGCAGTGGAACAGATTGAAGCTACGA
1 AGATTGAAGCCACAACCGCGAATCTTACTTCCCTGGCGATGCAGTGGAACAGATTGAAGCTACGA
* *
14845546 CGACGAATCTTATTTCCCAACATTGCAATTAAAAAGATTGAGGCCACAACGGTGAATATTACTTC
66 CGACGAATCTTATTTCCCAACATTGCAATT-AAAAGATTGAAGCCACAACGGCGAATATTACTTC
*
14845611 T-TGGCAG-TGCAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTCTTCCCGACATTACAGT
130 TCTGGC-GCTGCAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTCTTCCCGACATTACAAT
14845674 TAAA
194 TAAA
14845678 TAGAAGAACC
Statistics
Matches: 168, Mismatches: 26, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
197 119 0.71
198 49 0.29
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (198 bp):
AGATTGAAGCCACAACCGCGAATCTTACTTCCCTGGCGATGCAGTGGAACAGATTGAAGCTACGA
CGACGAATCTTATTTCCCAACATTGCAATTAAAAGATTGAAGCCACAACGGCGAATATTACTTCT
CTGGCGCTGCAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTCTTCCCGACATTACAATTA
AAA
Found at i:14845748 original size:44 final size:43
Alignment explanation
Indices: 14845693--14845938 Score: 157
Period size: 44 Copynumber: 5.7 Consensus size: 43
14845683 GAACCAATCC
*
14845693 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAACTGATGGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAC-GATGGATCT
* *** * **
14845737 TATCTCTCTGAAGTTGCAAAAGAGC--A-T-ATCGCATCCAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAACG-ATGGA-TCT
* * *
14845778 TATC-CTCCTGAAGTTGCAGTGGGGCAGAAT-GACGATGGCAAATCT
1 TATCTC-CCTGAAGTTGCAGTGGAGCAGATTAAACGATGG---ATCT
* * * * *
14845823 TATCTCCCTGAAGTTGTAGTGGATCAGATTAAAGCCAAT-AATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA--CGATGGATCT
* * *
14845867 TATCTCCCTGAAGTTGAAGTGGAGCAGATTAAAGTGATAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA-CGATGGATCT
* *
14845911 TATCTCTCTGAAGTTGCAG-AGAGCAGAT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGAT
14845939 CGCATCTAGT
Statistics
Matches: 154, Mismatches: 34, Indels: 29
0.71 0.16 0.13
Matches are distributed among these distances:
39 1 0.01
40 6 0.04
41 22 0.14
42 1 0.01
43 13 0.08
44 78 0.51
45 27 0.18
46 3 0.02
48 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (43 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAACGATGGATCT
Found at i:14845912 original size:174 final size:173
Alignment explanation
Indices: 14845688--14846023 Score: 467
Period size: 173 Copynumber: 1.9 Consensus size: 173
14845678 TAGAAGAACC
* * *
14845688 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAACTGATGGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGAAGTGGAGCAGATTAAACTGATAGATCTTATCTCTCTGAAGTTG
* * * * **
14845753 CAAAAGAGCATATCGCATCCAGTCTTATCCTC-CTGAAGTTGCAGTGGGGCAGAATGACGATGGC
66 C-AAAGAGCAGATCGCATCCAGTCTTATCC-CACTGAAGTTGCAATGGGGCAGAATCAAGAAAGC
* * *
14845817 AAATCTTATCTCCCTGAAGTTGTAGTGGATCAGATTAAAGCCAAT
129 AAATCTTATCTCCCTCAAGTTGCAGTGGAGCAGATTAAAGCCAAT
*
14845862 AATCCTATCTCCCTGAAGTTGAAGTGGAGCAGATTAAAGTGATAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGAAGTGGAGCAGATTAAACTGATAGATCTTATCTCTCTGAAGTTG
* * ** *
14845927 CAGAGAGCAGATCGCATCTAGTCTTATCCCACTGGGGTTGCAATGGGGCAGACTCAAGAAAGCAA
66 CAAAGAGCAGATCGCATCCAGTCTTATCCCACTGAAGTTGCAATGGGGCAGAATCAAGAAAGCAA
* *
14845992 GTCTTATCTCCTTCAAGTTGCAGTGGAGCAGA
131 ATCTTATCTCCCTCAAGTTGCAGTGGAGCAGA
14846024 CTGAGTAAGT
Statistics
Matches: 141, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
172 1 0.01
173 78 0.55
174 62 0.44
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (173 bp):
AATCCTATCTCCCTGAAGTTGAAGTGGAGCAGATTAAACTGATAGATCTTATCTCTCTGAAGTTG
CAAAGAGCAGATCGCATCCAGTCTTATCCCACTGAAGTTGCAATGGGGCAGAATCAAGAAAGCAA
ATCTTATCTCCCTCAAGTTGCAGTGGAGCAGATTAAAGCCAAT
Found at i:14846054 original size:44 final size:42
Alignment explanation
Indices: 14845773--14846161 Score: 225
Period size: 45 Copynumber: 8.9 Consensus size: 42
14845763 TATCGCATCC
* * *
14845773 AGTCTTATCCTCCTGAAGTTGCAGTGGGGCAGAATGACGATGGCA
1 AGTCTTAT-CTCCTGAAGTTGCAGTGGAGCAGACTGA-GA-AGCA
* * * *
14845818 AATCTTATCTCCCTGAAGTTGTAGTGGATCAGA-TTA-AAGCCAA
1 AGTCTTATCT-CCTGAAGTTGCAGTGGAGCAGACTGAGAAG-C-A
* * * * *
14845861 TAATCCTATCTCCCTGAAGTTGAAGTGGAGCAGA-TTA-AAGTGA
1 -AGTCTTATCT-CCTGAAGTTGCAGTGGAGCAGACTGAGAAG-CA
* * * * *
14845904 TAGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCATCT
1 -AG-TCTTATCTC-CTGAAGTTGCAGTGGAGCAGACTGAGAAGCA
* ** * * *
14845946 AGTCTTATCCCACTGGGGTTGCAATGGGGCAGACTCAAGAAAGCA
1 AGTCTTATCTC-CTGAAGTTGCAGTGGAGCAGACT-GAG-AAGCA
* *
14845991 AGTCTTATCTCCTTCAAGTTGCAGTGGAGCAGACTGAGTAAGTA
1 AGTCTTATCTCC-TGAAGTTGCAGTGGAGCAGACTGAG-AAGCA
* *
14846035 AGTCTTATCCTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCA
1 AGTCTTAT-CTCCTGAAGTTGCAGTGGAGCAGACTG-AGA-AGCA
* *
14846080 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTCAAGAAAGCA
1 AGTCTTATCT-CCTGAAGTTGCAGTGGAGCAGACT-GAG-AAGCA
* * *
14846125 AGTCTTATCCCCTTGAAATTGCAGTGGGGCAGACTGA
1 AGTCTTATCTCC-TGAAGTTGCAGTGGAGCAGACTGA
14846162 ATAAACAAAT
Statistics
Matches: 271, Mismatches: 53, Indels: 41
0.74 0.15 0.11
Matches are distributed among these distances:
40 17 0.06
41 9 0.03
42 3 0.01
43 14 0.05
44 101 0.37
45 126 0.46
46 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (42 bp):
AGTCTTATCTCCTGAAGTTGCAGTGGAGCAGACTGAGAAGCA
Found at i:14846055 original size:173 final size:173
Alignment explanation
Indices: 14845688--14846103 Score: 466
Period size: 173 Copynumber: 2.4 Consensus size: 173
14845678 TAGAAGAACC
* * *
14845688 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAACTGATGGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTGATAGATCTTATCTCTCTGAAGTTG
* * * * * **
14845753 CAAAAGAGCATATCGCATCCAGTCTTATCCTCCTGAAGTTGCAGTGGGGCAGAATGACGATGGCA
66 C-AGAGAGCAGATCGCATCCAGTCTTATCCTCCTGAAGTTGCAATGGGGCAGAATCAAGAAAGCA
* * * *
14845818 AATCTTATCTCCCTGAAGTTGTAGTGGATCAGATTAAAGCCAAT
130 AATCTTATCTCCCTCAAGTTGCAGTGGAGCAGACTAAAGCCAAT
*
14845862 AATCCTATCTCCCTGAAGTTGAAGTGGAGCAGATTAAAGTGATAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTGATAGATCTTATCTCTCTGAAGTTG
* ** *
14845927 CAGAGAGCAGATCGCATCTAGTCTTATCC-CACTGGGGTTGCAATGGGGCAGACTCAAGAAAGCA
66 CAGAGAGCAGATCGCATCCAGTCTTATCCTC-CTGAAGTTGCAATGGGGCAGAATCAAGAAAGCA
* * * *
14845991 AGTCTTATCTCCTTCAAGTTGCAGTGGAGCAGACT-GAG-TAAGT
130 AATCTTATCTCCCTCAAGTTGCAGTGGAGCAGACTAAAGCCAA-T
* * * * *
14846034 AAGTCTTATC-CTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCA-AG-TCTTATCTCCCTGA
1 AA-TCCTATCTC-CCTGAAGTTGCAGTGGAGCAGATTAAAG-T-G-ATAGATCTTATCTCTCTGA
14846096 AGTTGCAG
61 AGTTGCAG
14846104 TGGAGCAAAC
Statistics
Matches: 206, Mismatches: 29, Indels: 14
0.83 0.12 0.06
Matches are distributed among these distances:
171 2 0.01
172 7 0.03
173 109 0.53
174 84 0.41
175 3 0.01
176 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (173 bp):
AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTGATAGATCTTATCTCTCTGAAGTTG
CAGAGAGCAGATCGCATCCAGTCTTATCCTCCTGAAGTTGCAATGGGGCAGAATCAAGAAAGCAA
ATCTTATCTCCCTCAAGTTGCAGTGGAGCAGACTAAAGCCAAT
Found at i:14846063 original size:89 final size:89
Alignment explanation
Indices: 14845946--14846159 Score: 277
Period size: 89 Copynumber: 2.4 Consensus size: 89
14845936 GATCGCATCT
** * *
14845946 AGTCTTATCCCACTGGGGTTGCAATGGGGCAGACTCAAGAAAGCAAGTCTTATCTCCTTCAAGTT
1 AGTCTTATCCC-CTGAAGTTGCAGTGGGGCAGACTCAAGAAAGCAAGTCTTATCTCCCTCAAGTT
* * * *
14846011 GCAGTGGAGCAGACT-GAGTAAGTA
65 GCAGTGGAGCAAACTCAAGAAAGCA
* ** *
14846035 AGTCTTATCCTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTT
1 AGTCTTATCC-CCTGAAGTTGCAGTGGGGCAGACTCAAGAAAGCAAGTCTTATCTCCCTCAAGTT
14846100 GCAGTGGAGCAAACTCAAGAAAGCA
65 GCAGTGGAGCAAACTCAAGAAAGCA
*
14846125 AGTCTTATCCCCTTGAAATTGCAGTGGGGCAGACT
1 AGTCTTATCCCC-TGAAGTTGCAGTGGGGCAGACT
14846160 GAATAAACAA
Statistics
Matches: 109, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
89 71 0.65
90 38 0.35
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.25
Consensus pattern (89 bp):
AGTCTTATCCCCTGAAGTTGCAGTGGGGCAGACTCAAGAAAGCAAGTCTTATCTCCCTCAAGTTG
CAGTGGAGCAAACTCAAGAAAGCA
Found at i:14846188 original size:134 final size:134
Alignment explanation
Indices: 14845946--14846195 Score: 315
Period size: 134 Copynumber: 1.9 Consensus size: 134
14845936 GATCGCATCT
** * * * *
14845946 AGTCTTATCCCACTGGGGTTGCAATGGGGCAGACTCAAGAAAGCAAGTCTTATCTCCTTCAAGTT
1 AGTCTTATCCCACTGAAGTTGCAATGGAGCAAACTCAAGAAAGCAAGTCTTATCCCCTTCAAATT
* ** * ** *
14846011 GCAGTGGAGCAGACTGAGTAAGTAAGTCTTATCCTCCTGAAGTTGCAGTGGGGCAGACTGAAGAT
66 GCAGTGGAGCAGACTGAATAAACAAATCCAATCCTCCTAAAGTTGCAGTGGGGCAGACTGAAGAT
14846076 GGCA
131 GGCA
* *
14846080 AGTCTTATCTCC-CTGAAGTTGCAGTGGAGCAAACTCAAGAAAGCAAGTCTTATCCCCTTGAAAT
1 AGTCTTATC-CCACTGAAGTTGCAATGGAGCAAACTCAAGAAAGCAAGTCTTATCCCCTTCAAAT
* *
14846144 TGCAGTGGGGCAGACTGAATAAACAAATCCAAT-CTACCTAAAGTTGTAGTGG
65 TGCAGTGGAGCAGACTGAATAAACAAATCCAATCCT-CCTAAAGTTGCAGTGG
14846196 AGTGGATTAG
Statistics
Matches: 97, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
133 2 0.02
134 93 0.96
135 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (134 bp):
AGTCTTATCCCACTGAAGTTGCAATGGAGCAAACTCAAGAAAGCAAGTCTTATCCCCTTCAAATT
GCAGTGGAGCAGACTGAATAAACAAATCCAATCCTCCTAAAGTTGCAGTGGGGCAGACTGAAGAT
GGCA
Found at i:14846575 original size:33 final size:32
Alignment explanation
Indices: 14846538--14846600 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 32
14846528 AACAGTCCTT
* *
14846538 TTACAATAAAATGGGCCTAAAACCCAAACCCAA
1 TTACAACAAAATAGGCC-AAAACCCAAACCCAA
* *
14846571 TTACAACAAAATAGGCCCAAACCCAGACCC
1 TTACAACAAAATAGGCCAAAACCCAAACCC
14846601 GATTTTTGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
32 11 0.42
33 15 0.58
ACGTcount: A:0.46, C:0.32, G:0.10, T:0.13
Consensus pattern (32 bp):
TTACAACAAAATAGGCCAAAACCCAAACCCAA
Found at i:14847821 original size:31 final size:35
Alignment explanation
Indices: 14847786--14847858 Score: 91
Period size: 35 Copynumber: 2.2 Consensus size: 35
14847776 TTTTATAATT
14847786 TATATATGTA-AT-TAT-TTTTTTATA-ATCTATA
1 TATATATGTATATATATATTTTTTATATATCTATA
* *
14847817 TATATATGTATATATCTATTTTTTATATATGTATA
1 TATATATGTATATATATATTTTTTATATATCTATA
*
14847852 TGTATAT
1 TATATAT
14847859 TTTTTTTCTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 10 0.29
32 2 0.06
33 2 0.06
34 9 0.26
35 12 0.34
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (35 bp):
TATATATGTATATATATATTTTTTATATATCTATA
Found at i:14847865 original size:25 final size:23
Alignment explanation
Indices: 14847817--14847863 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
14847807 ATAATCTATA
*
14847817 TATATATGTATATATCTATTTTT
1 TATATATGTATATATATATTTTT
*
14847840 TATATATGTATATGTATATTTTT
1 TATATATGTATATATATATTTTT
14847863 T
1 T
14847864 TTCTAACGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.30, C:0.02, G:0.06, T:0.62
Consensus pattern (23 bp):
TATATATGTATATATATATTTTT
Found at i:14847865 original size:27 final size:27
Alignment explanation
Indices: 14847784--14847865 Score: 71
Period size: 29 Copynumber: 3.0 Consensus size: 27
14847774 ATTTTTATAA
14847784 TTTATATATGTA-AT-TAT-TTTTTTAT
1 TTTATATATGTATATGTATATTTTTT-T
** * * *
14847809 AATCTATATATATATGTATATATCTATTT
1 TTTATATATGTATATGTATAT-T-TTTTT
14847838 TTTATATATGTATATGTATATTTTTTT
1 TTTATATATGTATATGTATATTTTTTT
14847865 T
1 T
14847866 CTAACGAATA
Statistics
Matches: 42, Mismatches: 10, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
25 8 0.19
26 2 0.05
27 8 0.19
28 2 0.05
29 19 0.45
30 3 0.07
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.62
Consensus pattern (27 bp):
TTTATATATGTATATGTATATTTTTTT
Found at i:14849115 original size:12 final size:11
Alignment explanation
Indices: 14849089--14849113 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14849079 AGCCGAAAGC
14849089 TTTCTAGGGTT
1 TTTCTAGGGTT
14849100 TTTCTAGGGTT
1 TTTCTAGGGTT
14849111 TTT
1 TTT
14849114 TCGTTGATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.08, G:0.24, T:0.60
Consensus pattern (11 bp):
TTTCTAGGGTT
Found at i:14850228 original size:19 final size:19
Alignment explanation
Indices: 14850201--14850237 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
14850191 GTTATTGTTT
14850201 ATTTTTTTATTTA-TATTA
1 ATTTTTTTATTTACTATTA
14850219 ATTTTGTTTATTTACTATT
1 ATTTT-TTTATTTACTATT
14850238 TATACTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.70
Consensus pattern (19 bp):
ATTTTTTTATTTACTATTA
Found at i:14858536 original size:50 final size:50
Alignment explanation
Indices: 14858477--14858890 Score: 143
Period size: 50 Copynumber: 8.3 Consensus size: 50
14858467 GGCATTACAG
* *
14858477 TGGAGCAGATTGAAGCTGCAACGGTGAATCTTACTCCCCTGGCGGTGTAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTCCCCTGGCGGTGTAA
* ** ** ** *
14858527 TGGAACAGATTGAAGCTACGACGGTGAATCTTGTTTCCCC-AACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTT-ACTCCCCTGGCGGTGTAA
* * ** ** ** * *
14858577 T-TAAAAGATTGAAGCCGCAACGCCGAATCTTACTTTCCTGGTGGTGTAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTCCCCTGGCGGTGTAA
** ** ** ** *
14858626 TGGAGTAGATTGAAGCTACAACGGTGAATCTTGTTTCCCC-AACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTT-ACTCCCCTGGCGGTGTAA
** * ** * * * ** *
14858676 TTAAAAAGATTGAAGCCGCAAAGGCGAATCTTACTTCATTGGCGGTGTAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTCCCCTGGCGGTGTAA
* * * ** ** ** *
14858726 TGGAGCAGATTGAAGCTACGACGGCGAATCTTGTTTCCCC-AACATTGCAA
1 TGGAACAGATTGAAGCTACAACGGTGAATCTT-ACTCCCCTGGCGGTGTAA
** * * * * * * *
14858776 TTAAAAAGATTGAATCCACAACGGTGAATCTTACTTCCTTGGCGGTTTAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTCCCCTGGCGGTGTAA
* * * *** * * * *
14858826 TGAAACAGATCGAAGCTACGACGACAAATCTTACTTCCTTGGCGGTTTAG
1 TGGAACAGATTGAAGCTACAACGGTGAATCTTACTCCCCTGGCGGTGTAA
*
14858876 TGAAACAGATTGAAG
1 TGGAACAGATTGAAG
14858891 ATATCAGGTC
Statistics
Matches: 244, Mismatches: 113, Indels: 14
0.66 0.30 0.04
Matches are distributed among these distances:
48 3 0.01
49 32 0.13
50 199 0.82
51 10 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (50 bp):
TGGAACAGATTGAAGCTACAACGGTGAATCTTACTCCCCTGGCGGTGTAA
Found at i:14858738 original size:100 final size:100
Alignment explanation
Indices: 14858483--14858848 Score: 527
Period size: 100 Copynumber: 3.7 Consensus size: 100
14858473 ACAGTGGAGC
* * * *
14858483 AGATTGAAGCTGCAACGGTGAATCTTACTCCCCTGGCGGTGTAATGGAACAGATTGAAGCTACGA
1 AGATTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
14858548 CGGTGAATCTTGTTTCCCCAACATTGCAATT-AAA
66 CGGTGAATCTTGTTTCCCCAACATTGCAATTAAAA
* * * ** *
14858582 AGATTGAAGCCGCAACGCCGAATCTTACTTTCCTGGTGGTGTAGTGGAGTAGATTGAAGCTACAA
1 AGATTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
14858647 CGGTGAATCTTGTTTCCCCAACATTGCAATTAAAA
66 CGGTGAATCTTGTTTCCCCAACATTGCAATTAAAA
* ** *
14858682 AGATTGAAGCCGCAAAGGCGAATCTTACTTCATTGGCGGTGTAGTGGAGCAGATTGAAGCTACGA
1 AGATTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
*
14858747 CGGCGAATCTTGTTTCCCCAACATTGCAATTAAAA
66 CGGTGAATCTTGTTTCCCCAACATTGCAATTAAAA
* * * * * * *
14858782 AGATTGAATCCACAACGGTGAATCTTACTTCCTTGGCGGTTTAGTGAAACAGATCGAAGCTACGA
1 AGATTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
14858847 CG
66 CG
14858849 ACAAATCTTA
Statistics
Matches: 238, Mismatches: 28, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
99 86 0.36
100 152 0.64
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (100 bp):
AGATTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
CGGTGAATCTTGTTTCCCCAACATTGCAATTAAAA
Found at i:14859005 original size:45 final size:44
Alignment explanation
Indices: 14858899--14859230 Score: 144
Period size: 44 Copynumber: 7.6 Consensus size: 44
14858889 AGATATCAGG
* ** * *
14858899 TCTTATCTCCCTAAGGTTGCAGCAGAGCAGACTGAATAAACAAG
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGAAACAAA
* * * **
14858943 TCTTATC-CCCTTGAAGTTGTAGTGGGGCAGACTGAAGATGGCAAA
1 TCTTATCTCCC-TAAAGTTGCAGTGGAGCAGACTGAAGA-AACAAA
* * * * *
14858988 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTTAGGCCAA-TAA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAG-AAACAAA
* ** * * ** * *
14859032 TCCTATCTCCCTAAAGTTGCAGTGGAGTGGATTAAAGTGATAGA
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGAAACAAA
* * * * * * *
14859076 TCTTATCTCTCTAAAGTTGCAG-AGAGCAGA-T--CGCATCTAG
1 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGAAACAAA
* * * * *
14859116 T-TCTATCTCCCTAAAGTGGTAGTGGAGCAGACTG-GGTAAGAAA
1 TCT-TATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGAAACAAA
* * * *
14859159 GTCTTATC-CTCCTAAAATTGCAGTGGGGCA-ACTGAATAAAAAAAA
1 -TCTTATCTC-CCTAAAGTTGCAGTGGAGCAGACTGAA-GAAACAAA
* * *
14859204 TCCTATCTCCCTAAAATTGTAGTGGAG
1 TCTTATCTCCCTAAAGTTGCAGTGGAG
14859231 TAGATTAGAA
Statistics
Matches: 210, Mismatches: 63, Indels: 30
0.69 0.21 0.10
Matches are distributed among these distances:
39 1 0.00
40 18 0.09
41 7 0.03
42 2 0.01
43 17 0.08
44 125 0.60
45 37 0.18
46 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (44 bp):
TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGAAACAAA
Found at i:14860099 original size:12 final size:11
Alignment explanation
Indices: 14860073--14860097 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14860063 AGCCGAAAGG
14860073 TTTCTAGGGTT
1 TTTCTAGGGTT
14860084 TTTCTAGGGTT
1 TTTCTAGGGTT
14860095 TTT
1 TTT
14860098 TCGTTGATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.08, G:0.24, T:0.60
Consensus pattern (11 bp):
TTTCTAGGGTT
Found at i:14860743 original size:31 final size:31
Alignment explanation
Indices: 14860708--14860767 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
14860698 TGATGTAATT
* **
14860708 ATTATTTTTAATTTT-ATAATTTATATATATA
1 ATTATTATT-ATTTTCATAATCCATATATATA
14860739 ATTATTATTATTTTCATAATCCATATATA
1 ATTATTATTATTTTCATAATCCATATATA
14860768 CACGTGCACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 5 0.20
31 20 0.80
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (31 bp):
ATTATTATTATTTTCATAATCCATATATATA
Found at i:14861189 original size:19 final size:19
Alignment explanation
Indices: 14861160--14861196 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
14861150 GTCATTGTTT
14861160 ATTTTTTTATTTA-TATTA
1 ATTTTTTTATTTACTATTA
14861178 ATTTTGTTTATTTACTATT
1 ATTTT-TTTATTTACTATT
14861197 TATATTATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.70
Consensus pattern (19 bp):
ATTTTTTTATTTACTATTA
Found at i:14862512 original size:531 final size:524
Alignment explanation
Indices: 14861460--14862520 Score: 1467
Period size: 531 Copynumber: 2.0 Consensus size: 524
14861450 TGTCCTAATG
* * * *
14861460 CATTGGATGTGACGTGTTGATTTCTCGAGACAAATATTTTTTTTAAAAAAATTAATAAAGGAAAT
1 CATTGGATGTGACATATTGATTTCTCGAGACAAAGATTTTTTCT-AAAAAATTAATAAAGGAAAT
*
14861525 GTTCAACGTTTAGGATTTTGAGAAATTGTGCCCTAATGTATTGGGCTGCGATTTCTTCATAAATC
65 ATTCAACGTTTAGGATTTTGAGAAATTGTGCCCTAATGTATTGGGCTGCGATTTCTTCATAAATC
* * * *
14861590 TCAAACAATTGAATATTTTTTTTAAAAATTTTATTACATGAATCTTTTGGACAAACTCATTTTTG
130 TCAAACAATTGAATAGTTCTTTT-AAAATTTTATTACATCAATCTTTTGGACAAACTCATTTTTA
* *
14861655 AAGAAATAAAATATCGTGCCCTAACGCATTGGGTGTGACATTTTTTCTTCGAGAGTCTTAATGAA
194 AAGAAATAAAATATCGTGCACTAACGCATTGGGTGTGACATTTTTTCTTAGAGAGTCTTAATGAA
*
14861720 TAACTTGATTTAATTAAGGATCATATTTTTCAACTCTCGACATCAAGACATTTATTAATCAACTT
259 TAACTTGATTTAATTAAGGATCATATTTTTCAACTCTCGACATCAAGACATTAATTAATCAACTT
*
14861785 GGTACCAATTTTTGGGCGTTACGGGGGTGCTAATCCTTCCTCGTACGTAACTGACTCCCGAACCC
324 GGTACCAATTTTTGGGCGTTACGGGAGTGCTAATCCTTCCTCGTACGTAACTGACTCCCGAACCC
*
14861850 GTTTTTCTAAAACTCGTAGACCAAAGTCGTTTTTAGGTGATCCAATCACACCTTAATAAAAGATT
389 GTTTTTCTAAAACTCGTAGACCAAAGTCGTTTTTAGGTGATCCAATCACACCTCAATAAAAGATT
* ** *
14861915 GGTGGCGACACCAATTTTCATCGACAACTAATTTTTGTTTTTTTTCAAAAAATAAAAATAAAAAT
454 GGTGACGACACCAATTTTCATAAACAACTAATTTTTGTTTTGTTTC----AATAAAAATAAAAAT
14861980 GGTTTCGACA
515 GGTTTCGACA
** *
14861990 CATTGGATGTGACATATTGATTTCTCGAGATGAAGA-TTTTTCT-AAAAATTAATGAAGGAAATA
1 CATTGGATGTGACATATTGATTTCTCGAGACAAAGATTTTTTCTAAAAAATTAATAAAGGAAATA
* * *
14862053 TTCGAA-GTTTGGGATTTTGAGAAATTGTGCCCTAATGTATTGGGCTGCGGTTTCTTCATAAATT
66 TTC-AACGTTTAGGATTTTGAGAAATTGTGCCCTAATGTATTGGGCTGCGATTTCTTCATAAATC
*
14862117 TTAAACAATTGAAT-GTTCTTTT-AAATTTTATTACA-CAAGTCTTTTGGACAAACTCATTTTTA
130 TCAAACAATTGAATAGTTCTTTTAAAATTTTATTACATCAA-TCTTTTGGACAAACTCATTTTTA
* *
14862179 AAGGAATAAAATATCGTGCACTAACGCATTGGGTGTGATATTTTTTCTCCGAAATAAGAGAGTCT
194 AAGAAATAAAATATCGTGCACTAACGCATTGGGTGTGACATTTTTTCT------T-AGAGAGTCT
* * * **
14862244 TAATTAATAACTTGATTTAATTAAGGATCGTATTTTT-AACTTTCGACATTTAGACATTAATTAA
252 TAATGAATAACTTGATTTAATTAAGGATCATATTTTTCAACTCTCGACATCAAGACATTAATTAA
14862308 TCAACTTGGTACCAATTTTTGGGCGTTA-GGGAAGTGCTAATCCTTCCTCGTACGTAACTGACTC
317 TCAACTTGGTACCAATTTTTGGGCGTTACGGG-AGTGCTAATCCTTCCTCGTACGTAACTGACTC
* * *
14862372 CCGAACCTGTTTTTTCTAAGACTCGTAGACCAAAGTCGTTTTTAGGTGATCCAATCAGACCTCAA
381 CCGAACCCG-TTTTTCTAAAACTCGTAGACCAAAGTCGTTTTTAGGTGATCCAATCACACCTCAA
* * * * * * *
14862437 TAAAAGATTGGTGATGACTCCCAATTTTTCGTTTTTAAATAATTAATTTTTGTTTTGTTTC-TTC
445 TAAAAGATTGGTGACGAC-ACCAA-TTTTC----ATAAACAACTAATTTTTGTTTTGTTTCAATA
14862501 AAAA-AAAAATGGTTTCGACA
504 AAAATAAAAATGGTTTCGACA
14862521 AAATTTATTA
Statistics
Matches: 472, Mismatches: 42, Indels: 33
0.86 0.08 0.06
Matches are distributed among these distances:
523 2 0.00
524 80 0.17
526 6 0.01
527 89 0.19
528 2 0.00
529 9 0.02
530 122 0.26
531 127 0.27
532 9 0.02
533 5 0.01
537 21 0.04
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.37
Consensus pattern (524 bp):
CATTGGATGTGACATATTGATTTCTCGAGACAAAGATTTTTTCTAAAAAATTAATAAAGGAAATA
TTCAACGTTTAGGATTTTGAGAAATTGTGCCCTAATGTATTGGGCTGCGATTTCTTCATAAATCT
CAAACAATTGAATAGTTCTTTTAAAATTTTATTACATCAATCTTTTGGACAAACTCATTTTTAAA
GAAATAAAATATCGTGCACTAACGCATTGGGTGTGACATTTTTTCTTAGAGAGTCTTAATGAATA
ACTTGATTTAATTAAGGATCATATTTTTCAACTCTCGACATCAAGACATTAATTAATCAACTTGG
TACCAATTTTTGGGCGTTACGGGAGTGCTAATCCTTCCTCGTACGTAACTGACTCCCGAACCCGT
TTTTCTAAAACTCGTAGACCAAAGTCGTTTTTAGGTGATCCAATCACACCTCAATAAAAGATTGG
TGACGACACCAATTTTCATAAACAACTAATTTTTGTTTTGTTTCAATAAAAATAAAAATGGTTTC
GACA
Found at i:14862951 original size:19 final size:19
Alignment explanation
Indices: 14862912--14862971 Score: 63
Period size: 20 Copynumber: 3.2 Consensus size: 19
14862902 ATATTACTAC
*
14862912 TTTTATAAA--TTTTATAA
1 TTTTATAAATTTTTTATAT
14862929 TTTTA-AATATTTTTTATATT
1 TTTTATAA-ATTTTTTATA-T
*
14862949 TTTTATAAATTTTTAATAT
1 TTTTATAAATTTTTTATAT
14862968 TTTT
1 TTTT
14862972 TTATCTTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
16 2 0.06
17 6 0.17
19 12 0.33
20 14 0.39
21 2 0.06
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTTATAAATTTTTTATAT
Found at i:14863753 original size:3 final size:3
Alignment explanation
Indices: 14863745--14863792 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
14863735 AATAGAAATG
14863745 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14863793 GTGTTTAAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14867932 original size:27 final size:27
Alignment explanation
Indices: 14867884--14867949 Score: 71
Period size: 27 Copynumber: 2.3 Consensus size: 27
14867874 TTTTCAAAAA
14867884 TTTAAAATTTAGTTATTATATTTTTAT
1 TTTAAAATTTAGTTATTATATTTTTAT
* *
14867911 TTTAAGAATTTA-TTTTTTTATTTTTTAAAT
1 TTTAA-AATTTAGTTATTATA-TTTTT--AT
14867941 TTTAAAATT
1 TTTAAAATT
14867950 CATGTTTAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
27 11 0.33
28 11 0.33
29 4 0.12
30 7 0.21
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (27 bp):
TTTAAAATTTAGTTATTATATTTTTAT
Found at i:14870052 original size:14 final size:14
Alignment explanation
Indices: 14870033--14870084 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
14870023 ATTCAATTCA
*
14870033 ATTCTCAACTTATT
1 ATTCTCAATTTATT
*
14870047 ATTCTCGATTTATT
1 ATTCTCAATTTATT
* *
14870061 GTTCTCAATTTTTT
1 ATTCTCAATTTATT
*
14870075 ATTCTAAATT
1 ATTCTCAATT
14870085 CCCAATTCCA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.25, C:0.15, G:0.04, T:0.56
Consensus pattern (14 bp):
ATTCTCAATTTATT
Found at i:14870274 original size:53 final size:52
Alignment explanation
Indices: 14870208--14870313 Score: 133
Period size: 53 Copynumber: 2.0 Consensus size: 52
14870198 TTATAAATTG
* ** * *
14870208 TAAGAAAATATTATTTAATTATTTAATTTTAATCTA-TTAATTATTATGATGT
1 TAAGAAAAAATTATCAAATTATTTAAATTTAA-ATAGTTAATTATTATGATGT
*
14870260 TAAGAAAAAAATTATCAAATTATTTAAATTTAAATAGTTAATTATTATGTTGT
1 TAAG-AAAAAATTATCAAATTATTTAAATTTAAATAGTTAATTATTATGATGT
14870313 T
1 T
14870314 CAAATTAATA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
52 6 0.13
53 40 0.87
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (52 bp):
TAAGAAAAAATTATCAAATTATTTAAATTTAAATAGTTAATTATTATGATGT
Found at i:14871968 original size:63 final size:63
Alignment explanation
Indices: 14871883--14872063 Score: 179
Period size: 63 Copynumber: 2.9 Consensus size: 63
14871873 TTCCCTGTAT
* * * ** *
14871883 CAACACATACAACATCAA-TTTATTTTACATGAGCACCACATCACGTGCAATCATTCCCTATAC
1 CAACACATTCATCA-CAACTTTATTTCACACAAGCACCACATCACGTGCAATCATTCCCTACAC
* * * * *
14871946 CAACACATTTATCACCACTTTATTTCACACAAGCACCACTAT-ATGGGCAATCTTTCCCTACAC
1 CAACACATTCATCACAACTTTATTTCACACAAGCACCAC-ATCACGTGCAATCATTCCCTACAC
* * * *
14872009 CGACACATTCATCACAAGTTTATTACACACAAGCATCC-CAGCACGTGCAATCATT
1 CAACACATTCATCACAACTTTATTTCACACAAGCA-CCACATCACGTGCAATCATT
14872064 TCTTGCCATC
Statistics
Matches: 94, Mismatches: 20, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
62 3 0.03
63 87 0.93
64 4 0.04
ACGTcount: A:0.34, C:0.31, G:0.08, T:0.27
Consensus pattern (63 bp):
CAACACATTCATCACAACTTTATTTCACACAAGCACCACATCACGTGCAATCATTCCCTACAC
Found at i:14877172 original size:16 final size:15
Alignment explanation
Indices: 14877147--14877176 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
14877137 ATTCAATTAA
14877147 TTAACTAAATGCAAG
1 TTAACTAAATGCAAG
14877162 TTAACCTAAATGCAA
1 TTAA-CTAAATGCAA
14877177 ATGAATTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.47, C:0.17, G:0.10, T:0.27
Consensus pattern (15 bp):
TTAACTAAATGCAAG
Found at i:14881467 original size:17 final size:18
Alignment explanation
Indices: 14881447--14881480 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
14881437 GGCGATGAAG
14881447 TTGTGGCGGC-AACAGGA
1 TTGTGGCGGCAAACAGGA
*
14881464 TTGTGGTGGCAAACAGG
1 TTGTGGCGGCAAACAGG
14881481 GTAGGTAGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.24, C:0.15, G:0.41, T:0.21
Consensus pattern (18 bp):
TTGTGGCGGCAAACAGGA
Found at i:14883769 original size:20 final size:20
Alignment explanation
Indices: 14883754--14883793 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
14883744 ATGTGCAATC
14883754 AGAGGCACCAAAGTGCAAAT
1 AGAGGCACCAAAGTGCAAAT
* *
14883774 AGAGGCATCAAAGTGAAAAT
1 AGAGGCACCAAAGTGCAAAT
14883794 CTCATACAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.15, G:0.25, T:0.12
Consensus pattern (20 bp):
AGAGGCACCAAAGTGCAAAT
Found at i:14888156 original size:14 final size:13
Alignment explanation
Indices: 14888137--14888197 Score: 59
Period size: 14 Copynumber: 4.4 Consensus size: 13
14888127 CAAACACCTG
14888137 AAAATAAATCAAAA
1 AAAATAAAT-AAAA
*
14888151 AAAATAAAGAATAA
1 AAAATAAATAA-AA
*
14888165 AAAATTAATTAAATA
1 AAAA-TAAATAAA-A
*
14888180 AAAATAAATAAAC
1 AAAATAAATAAAA
14888193 AAAAT
1 AAAAT
14888198 GCAAGAAATA
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
13 7 0.18
14 22 0.56
15 10 0.26
ACGTcount: A:0.75, C:0.03, G:0.02, T:0.20
Consensus pattern (13 bp):
AAAATAAATAAAA
Found at i:14889895 original size:19 final size:20
Alignment explanation
Indices: 14889853--14889893 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
14889843 GTCCAACTGC
14889853 AACAAATTGAGTAAAAATTA
1 AACAAATTGAGTAAAAATTA
14889873 AACAAATTGAGTAAAAATTA
1 AACAAATTGAGTAAAAATTA
14889893 A
1 A
14889894 CATGTAACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.61, C:0.05, G:0.10, T:0.24
Consensus pattern (20 bp):
AACAAATTGAGTAAAAATTA
Found at i:14894659 original size:51 final size:51
Alignment explanation
Indices: 14894599--14894730 Score: 167
Period size: 51 Copynumber: 2.6 Consensus size: 51
14894589 CCGGTTCACG
* *
14894599 TAGTAGCCTGCACCTAGTATTACACACGTGACCAAAACCT-TCCAGTACACA
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAAAACCTATCCA-TACACA
* ** * * *
14894650 TAGTAGCCTGCACATAGTACTACACATGTGACCATTATCTATCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAAAACCTATCCATACACA
*
14894701 TAGTAGCCTGCACTTAGTACTACACACGTG
1 TAGTAGCCTGCACATAGTACTACACACGTG
14894731 TTTATAGGCA
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
51 67 0.96
52 3 0.04
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCAAAACCTATCCATACACA
Found at i:14900878 original size:26 final size:26
Alignment explanation
Indices: 14900842--14900895 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
14900832 AAGAAAAAAG
14900842 AAAGAGAAGTAAGCATATAGCTTAGT
1 AAAGAGAAGTAAGCATATAGCTTAGT
*
14900868 AAAGAGAAGTAATCATATAGCTTAGT
1 AAAGAGAAGTAAGCATATAGCTTAGT
14900894 AA
1 AA
14900896 GTACGTATGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.48, C:0.07, G:0.20, T:0.24
Consensus pattern (26 bp):
AAAGAGAAGTAAGCATATAGCTTAGT
Found at i:14901805 original size:50 final size:51
Alignment explanation
Indices: 14901744--14901876 Score: 151
Period size: 51 Copynumber: 2.6 Consensus size: 51
14901734 TATCATTCGA
* * *
14901744 TACACGTAGTAGCCTTCACATAGTACTACACACATGATC-AAACTTTCCGG
1 TACACGTAGTAGCCTACACATAGTACTACACACATGACCAAAACCTTCCGG
* * * * *
14901794 TTCACGTAGTAGCCGACACCTAGTATTACACACGTGACCAAAACCTTCCGG
1 TACACGTAGTAGCCTACACATAGTACTACACACATGACCAAAACCTTCCGG
** * *
14901845 TACACACAGTAGCCTGCACTTAGTACTACACA
1 TACACGTAGTAGCCTACACATAGTACTACACA
14901877 TGTGTTTATA
Statistics
Matches: 67, Mismatches: 15, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
50 32 0.48
51 35 0.52
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.23
Consensus pattern (51 bp):
TACACGTAGTAGCCTACACATAGTACTACACACATGACCAAAACCTTCCGG
Found at i:14906576 original size:23 final size:23
Alignment explanation
Indices: 14906546--14906592 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
14906536 AACATATTGG
14906546 GTTTTGAGCCAAATCTTCTTTTA
1 GTTTTGAGCCAAATCTTCTTTTA
14906569 GTTTTGAGCCAAATCTTCTTTTA
1 GTTTTGAGCCAAATCTTCTTTTA
14906592 G
1 G
14906593 GTTTACTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.21, C:0.17, G:0.15, T:0.47
Consensus pattern (23 bp):
GTTTTGAGCCAAATCTTCTTTTA
Found at i:14912852 original size:50 final size:50
Alignment explanation
Indices: 14912728--14912974 Score: 192
Period size: 50 Copynumber: 4.8 Consensus size: 50
14912718 GATAATAACA
* * ** * * *
14912728 TGCCAAAGCCATGTCCCAGACATGGTCCTACATGGGATGTTTCTTGTAC--
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-CGG
** * * * **
14912777 TGCCAATACAATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * ** ** *
14912827 TGCCCATGTTATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
*
14912877 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GG
* * *
14912933 TGCCAATGCCACGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
14912975 TTACCCAAAT
Statistics
Matches: 157, Mismatches: 33, Indels: 9
0.79 0.17 0.05
Matches are distributed among these distances:
48 1 0.01
49 36 0.23
50 78 0.50
53 2 0.01
56 40 0.25
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:14918965 original size:25 final size:25
Alignment explanation
Indices: 14918927--14918991 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
14918917 TATACGAGTA
* *
14918927 TATAATCGAGAAGCTCATTTGAGCTG
1 TATAA-CGGGAAGCTCATGTGAGCTG
14918953 TATAACGGGAAGCTCATGTGAGCTG
1 TATAACGGGAAGCTCATGTGAGCTG
* *
14918978 TATAGCAGGAAGCT
1 TATAACGGGAAGCT
14918992 TATAAGAGTC
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
25 30 0.86
26 5 0.14
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (25 bp):
TATAACGGGAAGCTCATGTGAGCTG
Found at i:14919125 original size:50 final size:49
Alignment explanation
Indices: 14919003--14919125 Score: 124
Period size: 50 Copynumber: 2.5 Consensus size: 49
14918993 ATAAGAGTCG
* * * *
14919003 TAATCGGGAAGCTCATACGAGCCAATATCAAGAAGCTCCAGAGCGCCAT
1 TAATCAGGAAGCTCATACGAGCCAATATCAAGAAGCTCCAAAGAGCAAT
* ** *
14919052 TAATCAGGAAGCTCATGA-AAGCCAATTATCGGGAAGCTCTAAAGAGTCAAT
1 TAATCAGGAAGCTCAT-ACGAGCCAA-TATCAAGAAGCTCCAAAGAG-CAAT
*
14919103 T-ATTAGGAAGCTCATACGAGCCA
1 TAATCAGGAAGCTCATACGAGCCA
14919126 TAAACAAAAA
Statistics
Matches: 60, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
49 22 0.37
50 34 0.57
51 4 0.07
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (49 bp):
TAATCAGGAAGCTCATACGAGCCAATATCAAGAAGCTCCAAAGAGCAAT
Found at i:14919171 original size:25 final size:25
Alignment explanation
Indices: 14919143--14919222 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
14919133 AAAGCTCAAG
14919143 AGAGCCATATAACGGGATGCTCATA
1 AGAGCCATATAACGGGATGCTCATA
* * * * * * *
14919168 AGAGCTAAATAATGCGAAGCTCGTG
1 AGAGCCATATAACGGGATGCTCATA
* *
14919193 AGAGCC-TATTATCAGGATGCTCATA
1 AGAGCCATA-TAACGGGATGCTCATA
14919218 AGAGC
1 AGAGC
14919223 TGTGGTGTGT
Statistics
Matches: 38, Mismatches: 16, Indels: 2
0.68 0.29 0.04
Matches are distributed among these distances:
24 1 0.03
25 37 0.97
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (25 bp):
AGAGCCATATAACGGGATGCTCATA
Found at i:14919187 original size:99 final size:99
Alignment explanation
Indices: 14919009--14919189 Score: 217
Period size: 99 Copynumber: 1.8 Consensus size: 99
14918999 GTCGTAATCG
* * * *
14919009 GGAAGCTCATACGAGCCAATATCAAGAAGCTCCAGAGCGCCATTAATCAGGAAGCTCATGAAAGC
1 GGAAGCTCATACGAGCCAATAACAAAAAGCTCAAGAGAGCCATTAATCAGGAAGCTCATGAAAGC
* * *
14919074 CAATTATCGGGAAGCTCTAAAGAGTCAATTATTA
66 AAATAATCGCGAAGCTCTAAAGAGTCAATTATTA
* *
14919108 GGAAGCTCATACGAGCC-ATAAACAAAAAGCTCAAGAGAGCCATATAA-CGGGATGCTCAT-AAG
1 GGAAGCTCATACGAGCCAAT-AACAAAAAGCTCAAGAGAGCCAT-TAATCAGGAAGCTCATGAA-
14919170 AGCTAAATAAT-GCGAAGCTC
63 AGC-AAATAATCGCGAAGCTC
14919190 GTGAGAGCCT
Statistics
Matches: 69, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
98 4 0.06
99 57 0.83
100 8 0.12
ACGTcount: A:0.39, C:0.21, G:0.22, T:0.18
Consensus pattern (99 bp):
GGAAGCTCATACGAGCCAATAACAAAAAGCTCAAGAGAGCCATTAATCAGGAAGCTCATGAAAGC
AAATAATCGCGAAGCTCTAAAGAGTCAATTATTA
Found at i:14920077 original size:14 final size:14
Alignment explanation
Indices: 14920058--14920095 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
14920048 CTTTCCCCCT
14920058 TTTCTTTTTCTTTC
1 TTTCTTTTTCTTTC
14920072 TTTCTTTTGT-TTTC
1 TTTCTTTT-TCTTTC
*
14920086 TTTCTATTTC
1 TTTCTTTTTC
14920096 GTTTTGCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 1 0.05
14 19 0.90
15 1 0.05
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (14 bp):
TTTCTTTTTCTTTC
Found at i:14920110 original size:21 final size:20
Alignment explanation
Indices: 14920064--14920111 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 20
14920054 CCCTTTTCTT
*
14920064 TTTCTTTC--TTTCTTTTGT
1 TTTCTTTCTATTTCTTTTGC
14920082 TTTCTTTCTATTTCGTTTTGC
1 TTTCTTTCTATTTC-TTTTGC
*
14920103 TTTGTTTCT
1 TTTCTTTCT
14920112 TTTTAATTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 8 0.32
20 4 0.16
21 13 0.52
ACGTcount: A:0.02, C:0.17, G:0.08, T:0.73
Consensus pattern (20 bp):
TTTCTTTCTATTTCTTTTGC
Found at i:14920122 original size:35 final size:33
Alignment explanation
Indices: 14920058--14920128 Score: 81
Period size: 35 Copynumber: 2.1 Consensus size: 33
14920048 CTTTCCCCCT
* *
14920058 TTTCTTTTTCTTTCTTTCTTTTGTTTTCTTTCTA
1 TTTCTTTTGCTTTCTTTCTTTTGTATTCTTT-TA
*
14920092 TTTCGTTTTGCTTTGTTTCTTTT-TAATTCTTTTA
1 TTTC-TTTTGCTTTCTTTCTTTTGT-ATTCTTTTA
14920126 TTT
1 TTT
14920129 TATTATTTCG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
34 10 0.31
35 22 0.69
ACGTcount: A:0.06, C:0.14, G:0.06, T:0.75
Consensus pattern (33 bp):
TTTCTTTTGCTTTCTTTCTTTTGTATTCTTTTA
Found at i:14922067 original size:19 final size:20
Alignment explanation
Indices: 14922045--14922082 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
14922035 CTTAGCTAAC
*
14922045 ACTAACTATTTCC-TAACAG
1 ACTAACTATATCCTTAACAG
14922064 ACTAACTATATCCTTAACA
1 ACTAACTATATCCTTAACA
14922083 TTCATCCATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.39, C:0.26, G:0.03, T:0.32
Consensus pattern (20 bp):
ACTAACTATATCCTTAACAG
Found at i:14931215 original size:21 final size:21
Alignment explanation
Indices: 14931159--14931215 Score: 53
Period size: 21 Copynumber: 2.7 Consensus size: 21
14931149 GTTATTCCAA
* *
14931159 AAATACAAAAAAAAAATTAAT
1 AAATACAAAAATAAAATAAAT
* **
14931180 AACT-CAAATGGTAAAATAAAT
1 AAATACAAA-AATAAAATAAAT
14931201 AAATACAAAAATAAA
1 AAATACAAAAATAAA
14931216 TATTGGTGCC
Statistics
Matches: 26, Mismatches: 8, Indels: 4
0.68 0.21 0.11
Matches are distributed among these distances:
20 4 0.15
21 18 0.69
22 4 0.15
ACGTcount: A:0.70, C:0.07, G:0.04, T:0.19
Consensus pattern (21 bp):
AAATACAAAAATAAAATAAAT
Found at i:14931356 original size:17 final size:17
Alignment explanation
Indices: 14931334--14931368 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
14931324 CCCTTAGTAC
*
14931334 TGTTGCAAACATGATAT
1 TGTTGCAAACATAATAT
14931351 TGTTGCAAACATAATAT
1 TGTTGCAAACATAATAT
14931368 T
1 T
14931369 TTGGTAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (17 bp):
TGTTGCAAACATAATAT
Done.