Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 52 of 221
Found at i:14936599 original size:27 final size:27
Alignment explanation
Indices: 14936554--14936608 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
14936544 ATTAATTTAT
*
14936554 GTAGGGGGAGGGGGAATATAGGGATAG
1 GTAGGGGGAGAGGGAATATAGGGATAG
*
14936581 GTAGGGGGAGAGGGTATATAGGGATAG
1 GTAGGGGGAGAGGGAATATAGGGATAG
14936608 G
1 G
14936609 AACGTTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.29, C:0.00, G:0.55, T:0.16
Consensus pattern (27 bp):
GTAGGGGGAGAGGGAATATAGGGATAG
Found at i:14938520 original size:24 final size:23
Alignment explanation
Indices: 14938492--14938536 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
14938482 AAATAAAGCC
*
14938492 TTATTATTATTATTAGTAAATATT
1 TTATTATTATTACTA-TAAATATT
14938516 TTATTATTATTACTATAAATA
1 TTATTATTATTACTATAAATA
14938537 AAGCAAGTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (23 bp):
TTATTATTATTACTATAAATATT
Found at i:14939029 original size:21 final size:22
Alignment explanation
Indices: 14938985--14939032 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
14938975 TTTATAATTT
*
14938985 TTTTATAATAATTTAATTTTAA
1 TTTTATAATAATTTAATTTAAA
* *
14939007 TTTTATATTCATTT-ATTTAAA
1 TTTTATAATAATTTAATTTAAA
14939028 TTTTA
1 TTTTA
14939033 AAAAAATCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (22 bp):
TTTTATAATAATTTAATTTAAA
Found at i:14939913 original size:40 final size:40
Alignment explanation
Indices: 14939849--14939925 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
14939839 AAGTCATGGG
* * * * * *
14939849 ACGTGTCAGCAAATCGCGTCCACGTCAGCGCGCTTTGCTT
1 ACGTGGCAACAAATCACGTACACGTAAGCGCGATTTGCTT
14939889 ACGTGGCAACAAATCACGTACACGTAAGCGCGATTTG
1 ACGTGGCAACAAATCACGTACACGTAAGCGCGATTTG
14939926 TGTCCATGTC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
ACGTGGCAACAAATCACGTACACGTAAGCGCGATTTGCTT
Found at i:14940690 original size:15 final size:15
Alignment explanation
Indices: 14940652--14940691 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
14940642 TTTTTTCTCT
14940652 AAAACCCTAAAAACC
1 AAAACCCTAAAAACC
**
14940667 CTAACCCTAAAAACC
1 AAAACCCTAAAAACC
*
14940682 AAAAACCTAA
1 AAAACCCTAA
14940692 CGTGGGAAAA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.57, C:0.33, G:0.00, T:0.10
Consensus pattern (15 bp):
AAAACCCTAAAAACC
Found at i:14960722 original size:25 final size:25
Alignment explanation
Indices: 14960672--14960724 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
14960662 GTTACCGGAG
* * * *
14960672 GTTGTTAGCTATTTTCTTGTTTTTA
1 GTTGTTAGCTACTTCCTTATTCTTA
14960697 GTTGTTAGCTACTTCCTTATTCTTA
1 GTTGTTAGCTACTTCCTTATTCTTA
14960722 GTT
1 GTT
14960725 AAGTAGTTGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.13, C:0.13, G:0.15, T:0.58
Consensus pattern (25 bp):
GTTGTTAGCTACTTCCTTATTCTTA
Found at i:14961408 original size:22 final size:21
Alignment explanation
Indices: 14961383--14961434 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 21
14961373 TTTATTAAAT
14961383 AAAATA-AAATTATAAAAACTAA
1 AAAATATAAA-TA-AAAAACTAA
*
14961405 AAAATATAAATAGAAAACTAA
1 AAAATATAAATAAAAAACTAA
14961426 AAAATATAA
1 AAAATATAA
14961435 CATTTGTTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 17 0.61
22 8 0.29
23 3 0.11
ACGTcount: A:0.73, C:0.04, G:0.02, T:0.21
Consensus pattern (21 bp):
AAAATATAAATAAAAAACTAA
Found at i:14961562 original size:20 final size:19
Alignment explanation
Indices: 14961529--14961567 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
14961519 GAAATTAAAA
14961529 TATTATTTCTTTTAATTTTT
1 TATTATTTCTTTT-ATTTTT
14961549 TATTATTT-TATTTATTTTT
1 TATTATTTCT-TTTATTTTT
14961568 GTTTAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.77
Consensus pattern (19 bp):
TATTATTTCTTTTATTTTT
Found at i:14962750 original size:12 final size:12
Alignment explanation
Indices: 14962718--14962754 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
14962708 CCCTTTTTTT
*
14962718 AAATAATTTTAA
1 AAATATTTTTAA
14962730 AAATATTTTTAA
1 AAATATTTTTAA
*
14962742 AAATTTTTTTAA
1 AAATATTTTTAA
14962754 A
1 A
14962755 TCGTAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (12 bp):
AAATATTTTTAA
Found at i:14963868 original size:7 final size:7
Alignment explanation
Indices: 14963856--14963880 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14963846 AGTCGATTGA
14963856 TATTTAG
1 TATTTAG
14963863 TATTTAG
1 TATTTAG
14963870 TATTTAG
1 TATTTAG
14963877 TATT
1 TATT
14963881 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:14965034 original size:25 final size:25
Alignment explanation
Indices: 14964999--14965046 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
14964989 CATTTTGATA
14964999 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
* *
14965024 TTATTTTATGTAATGAAATAGAA
1 TTATTTGATGTAATAAAATAGAA
14965047 ATTTTTGATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.42
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:14965107 original size:23 final size:22
Alignment explanation
Indices: 14965085--14966175 Score: 651
Period size: 23 Copynumber: 49.1 Consensus size: 22
14965075 AACCATTAAT
14965085 ACCCTTAACTTAAAAACCCTAA
1 ACCCTTAACTTAAAAACCCTAA
* ** *
14965107 TCTAATTTAA-TTAAAAACCTTAA
1 AC--CCTTAACTTAAAAACCCTAA
14965130 ACCCTTAACTTAAAAACCCT-A
1 ACCCTTAACTTAAAAACCCTAA
*
14965151 ACCTAATTAACTTAAAAACCCT-A
1 ACC--CTTAACTTAAAAACCCTAA
* * * *
14965174 ACCTAATTAAATTAAAAATCGT-A
1 ACC--CTTAACTTAAAAACCCTAA
14965197 ACCCTTAACTTAAAAACCCT-A
1 ACCCTTAACTTAAAAACCCTAA
* *
14965218 ACCTAATTAAATTAAAAACCCT-A
1 ACC--CTTAACTTAAAAACCCTAA
* **
14965241 ACCTAATTTAA-TTAAAAACTTTAA
1 ACC---CTTAACTTAAAAACCCTAA
* *
14965265 ACCCTAAACTTAAAAACCATAA
1 ACCCTTAACTTAAAAACCCTAA
* *
14965287 CCCCTTTAACTTTAAAACCCT-A
1 ACCC-TTAACTTAAAAACCCTAA
*
14965309 A-CC-TAATTTAATTAAA----AA
1 ACCCTTAACTTAA--AAACCCTAA
* *
14965327 ACCCTAAACTTAAAAACACTAA
1 ACCCTTAACTTAAAAACCCTAA
*
14965349 CCACCTTAACTTAAAAACCCT-A
1 AC-CCTTAACTTAAAAACCCTAA
* *
14965371 ACCTAATTAACTTAAAAAACCT-A
1 ACC--CTTAACTTAAAAACCCTAA
*
14965394 A---TTAAATTAAAAACCCT-A
1 ACCCTTAACTTAAAAACCCTAA
* *
14965412 ACCTAATTTAA-TTAAAAATCCTAA
1 ACC---CTTAACTTAAAAACCCTAA
*
14965436 ACCCTAAACTTAAAAA-CCT-A
1 ACCCTTAACTTAAAAACCCTAA
*
14965456 ACCTAATTAACTTAAAAACCCT-A
1 ACC--CTTAACTTAAAAACCCTAA
*
14965479 ACCTAATTTAA-TTAAAAACCCTAA
1 ACC---CTTAACTTAAAAACCCTAA
* *
14965503 ACCATAAACTTAAAAACCCT-A
1 ACCCTTAACTTAAAAACCCTAA
* * *
14965524 GCCTAATTAAATTAAAAACCCT-A
1 ACC--CTTAACTTAAAAACCCTAA
*
14965547 ACCGAATTTAA-TTAAAAACCCT-A
1 ACC---CTTAACTTAAAAACCCTAA
* * * *
14965570 ACCTAATTAAATTAAAAATCAT-A
1 ACC--CTTAACTTAAAAACCCTAA
*
14965593 ACTCTTAACTTAAAAACCCT-A
1 ACCCTTAACTTAAAAACCCTAA
*
14965614 ACCTAATTTAA-TTAAAAACCCTAA
1 ACC---CTTAACTTAAAAACCCTAA
14965638 A-CCTTAAACTTAAAAACCCTAA
1 ACCCTT-AACTTAAAAACCCTAA
* *
14965660 CCCCTTAACTTAAAAACTCT-A
1 ACCCTTAACTTAAAAACCCTAA
*
14965681 ACCTAATTAACTTAAAAACCCTAA
1 ACC--CTTAACTTAAAAACCCTAA
*
14965705 CCCCCTTAACTTAAAAACCCT-A
1 -ACCCTTAACTTAAAAACCCTAA
* *
14965727 ACCTAATTAACTTTAAAACCCT-A
1 ACC--CTTAACTTAAAAACCCTAA
* *
14965750 ACCTAATTAAATTAAAAACCCT-A
1 ACC--CTTAACTTAAAAACCCTAA
** *
14965773 ACTTAATTTAA-TTAAAAATCCTAA
1 AC---CCTTAACTTAAAAACCCTAA
*
14965797 ACCCTAAACTTAAAAACCCT-A
1 ACCCTTAACTTAAAAACCCTAA
* *
14965818 ACCTAATTTAA-TTAAAAACTCT-A
1 ACC---CTTAACTTAAAAACCCTAA
* *
14965841 ACCCTAAACTTAAAAAACCTAA
1 ACCCTTAACTTAAAAACCCTAA
* *
14965863 CCCCCTGAACTTAAAAACCCT-A
1 -ACCCTTAACTTAAAAACCCTAA
*
14965885 ACCTAATTAACTTAAAAACCCT-A
1 ACC--CTTAACTTAAAAACCCTAA
*
14965908 ACCTAATTAACTTAAAAACCCTAA
1 ACC--CTTAACTTAAAAACCCTAA
*
14965932 CCCCATTAACTTAAAAACCCT-A
1 ACCC-TTAACTTAAAAACCCTAA
*
14965954 ACCCTTAACTTAAAAACACTAA
1 ACCCTTAACTTAAAAACCCTAA
14965976 ACCCTTAACTTAAAAACCCTAA
1 ACCCTTAACTTAAAAACCCTAA
* *
14965998 CCTCCTTAACTTAAAAACACTAA
1 AC-CCTTAACTTAAAAACCCTAA
14966021 ACCCTTAACTTAAAAACCCT-A
1 ACCCTTAACTTAAAAACCCTAA
*
14966042 ACCCTTAACTTAAAAATCCTAA
1 ACCCTTAACTTAAAAACCCTAA
* *
14966064 CCCCTTTAACTTCAAAACCCT-A
1 ACCC-TTAACTTAAAAACCCTAA
* *
14966086 ACCCTTAACTAAAAAACACTAA
1 ACCCTTAACTTAAAAACCCTAA
14966108 ACCCTTAACTTAAAAACCCT-A
1 ACCCTTAACTTAAAAACCCTAA
14966129 ACCCTTAACTTAAAAACCCT-A
1 ACCCTTAACTTAAAAACCCTAA
*
14966150 ACCTAATTTAA-TTAAAAACCCTAA
1 ACC---CTTAACTTAAAAACCCTAA
14966174 AC
1 AC
14966176 TAAATTAATA
Statistics
Matches: 869, Mismatches: 122, Indels: 154
0.76 0.11 0.13
Matches are distributed among these distances:
18 21 0.02
19 8 0.01
20 15 0.02
21 160 0.18
22 175 0.20
23 426 0.49
24 62 0.07
25 2 0.00
ACGTcount: A:0.47, C:0.26, G:0.00, T:0.26
Consensus pattern (22 bp):
ACCCTTAACTTAAAAACCCTAA
Found at i:14965233 original size:67 final size:67
Alignment explanation
Indices: 14965089--14966183 Score: 1001
Period size: 67 Copynumber: 16.4 Consensus size: 67
14965079 ATTAATACCC
* * *
14965089 TTAACTTAAAAACCCTAATCTAATTTAATTAAAAACCTTAAACCCTTAACTTAAAAACCCTAACC
1 TTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCT-AACCCTTAACTTAAAAACCCTAACC
14965154 TAA
65 TAA
* *
14965157 TTAACTTAAAAACCCTAACCTAATTAAATTAAAAATCGTAACCCTTAACTTAAAAACCCTAACCT
1 TTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCCTTAACTTAAAAACCCTAACCT
14965222 AA
66 AA
* * ** * *
14965224 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACTTTAAACCCTAAACTTAAAAACCATAACC
1 TTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCT-AACCCTTAACTTAAAAACCCTAACC
***
14965289 CCT
65 TAA
* * * *
14965292 TTAACTTTAAAACCCTAACCTAATTTAATT-AAAA----AACCCTAAACTTAAAAACACTAACC-
1 TTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCCTTAACTTAAAAACCCTAACCT
*
14965351 ACC
66 A-A
* * *
14965354 TTAACTTAAAAACCCTAACCTAATTAACTTAAAAAACCTAA---TTAAATTAAAAACCCTAACCT
1 TTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCCTTAACTTAAAAACCCTAACCT
14965416 AA
66 AA
* * *
14965418 TTTAA-TTAAAAATCCTAAACCCT-A--AACTTAAAAA-CCTAACCTAATTAACTTAAAAACCCT
1 -TTAACTTAAAAACCCT-AA-CCTAATTAAATTAAAAACCCTAACC--CTTAACTTAAAAACCCT
14965478 AACCTAA
61 AACCTAA
* * *
14965485 TTTAA-TTAAAAACCCTAAACC--A-TAAACTTAAAAACCCTAGCCTAATTAAATTAAAAACCCT
1 -TTAACTTAAAAACCCT-AACCTAATTAAA-TTAAAAACCCTAACC--CTTAACTTAAAAACCCT
*
14965546 AACCGAA
61 AACCTAA
* * *
14965553 TTTAA-TTAAAAACCCTAACCTAATTAAATTAAAAATCATAACTCTTAACTTAAAAACCCTAACC
1 -TTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCCTTAACTTAAAAACCCTAACC
14965617 TAA
65 TAA
*
14965620 TTTAA-TTAAAAACCCTAAACC---TTAAACTTAAAAACCCTAACCCCTTAACTTAAAAACTCTA
1 -TTAACTTAAAAACCCT-AACCTAATTAAA-TTAAAAACCCTAA-CCCTTAACTTAAAAACCCTA
14965681 ACCTAA
62 ACCTAA
*** * * *
14965687 TTAACTTAAAAACCCTAACCCCCTTAACTTAAAAACCCTAACCTAATTAACTTTAAAACCCTAAC
1 TTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACC--CTTAACTTAAAAACCCTAAC
14965752 CTAA
64 CTAA
* * * * *
14965756 TTAAATTAAAAACCCTAACTTAATTTAATTAAAAATCCTAAACCCTAAACTTAAAAACCCTAACC
1 TTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCT-AACCCTTAACTTAAAAACCCTAACC
14965821 TAA
65 TAA
* * * *
14965824 TTTAA-TTAAAAACTCTAACCCT-A--AACTTAAAAAACCTAACCCCCTGAACTTAAAAACCCTA
1 -TTAACTTAAAAACCCTAA-CCTAATTAAATTAAAAACCCTAA--CCCTTAACTTAAAAACCCTA
14965885 ACCTAA
62 ACCTAA
*
14965891 TTAACTTAAAAACCCTAACCTAATTAACTTAAAAACCCTAACCCCATTAACTTAAAAACCCTAAC
1 TTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAA-CCC-TTAACTTAAAAACCCTAAC
*
14965956 C--C
64 CTAA
* * * *
14965958 TTAACTTAAAAACACTAAACC--CTTAACTTAAAAACCCTAACCTCCTTAACTTAAAAACACTAA
1 TTAACTTAAAAACCCT-AACCTAATTAAATTAAAAACCCTAA-C-CCTTAACTTAAAAACCCT-A
*
14966021 ACC--C
62 ACCTAA
* * * *
14966025 TTAACTTAAAAACCCTAACC--CTTAACTTAAAAATCCTAACCCCTTTAACTTCAAAACCCTAAC
1 TTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAA-CCC-TTAACTTAAAAACCCTAAC
*
14966088 C--C
64 CTAA
* * * *
14966090 TTAACTAAAAAACACTAAACC--CTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCTAACC
1 TTAACTTAAAAACCCT-AACCTAATTAAATTAAAAACCCTAACCCTTAACTTAAAAACCCTAACC
14966153 TAA
65 TAA
*
14966156 TTTAA-TTAAAAACCCTAAACTAAATTAA
1 -TTAACTTAAAAACCCTAACCT-AATTAA
14966184 TAATTTTACT
Statistics
Matches: 889, Mismatches: 86, Indels: 104
0.82 0.08 0.10
Matches are distributed among these distances:
62 55 0.06
63 14 0.02
64 46 0.05
65 43 0.05
66 148 0.17
67 272 0.31
68 195 0.22
69 108 0.12
70 8 0.01
ACGTcount: A:0.47, C:0.26, G:0.00, T:0.26
Consensus pattern (67 bp):
TTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCCTTAACTTAAAAACCCTAACCT
AA
Found at i:14965339 original size:135 final size:134
Alignment explanation
Indices: 14965089--14966184 Score: 952
Period size: 135 Copynumber: 8.2 Consensus size: 134
14965079 ATTAATACCC
* * * *
14965089 TTAACTTAAAAACCCTAATCTAATTTAATTAAAAACCTTAAACCCTTAACTTAAAAACCCTAACC
1 TTAAATTAAAAACCCTAACCTAA-TTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACC
* *
14965154 TAA-TTAACTTAAAAACCCTAACCTAA-TTAAATTAAAAATCGTAACCCTTAACTTAAAAACCCT
65 -AATTTAACTTAAAAACCCTAACCTAACTT-AATTAAAAACCCTAACCCTTAACTTAAAAACCCT
14965217 AACCTAA
128 AACCTAA
** *
14965224 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACTTTAAACCCTAAACTTAAAAACCATAACC
1 TTAAATTAAAAACCCTAACCTAA-TTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACC
** * * * *
14965289 CCTTTAACTTTAAAACCCTAACCTAATTTAATT-AAAA----AACCCTAAACTTAAAAACACTAA
65 AATTTAACTTAAAAACCCTAACCTAACTTAATTAAAAACCCTAACCCTTAACTTAAAAACCCTAA
*
14965349 CC-ACC
130 CCTA-A
* * *
14965354 TTAACTTAAAAACCCTAACCTAATTAACTTAAAAAACCT-AA--TTAAA-TTAAAAACCCTAACC
1 TTAAATTAAAAACCCTAACCTAATTAA-TTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACC
* * *
14965415 TAATTTAA-TTAAAAATCCTAAACCCTAA---ACTTAAAAA-CCTAACCTAATTAACTTAAAAAC
65 -AATTTAACTTAAAAACCCT-AA-CCTAACTTAATTAAAAACCCTAACC--CTTAACTTAAAAAC
14965475 CCTAACCTAA
125 CCTAACCTAA
* * * *
14965485 TTTAATTAAAAACCCTAAACCATAA--ACTTAAAAACCCT--AGCCTAATTAAATTAAAAACCCT
1 TTAAATTAAAAACCCT-AACC-TAATTAATTAAAAACCCTAAACCCT-A--AACTTAAAAACCCT
* * *
14965546 AACCGAATTTAA-TTAAAAACCCTAACCTAA-TTAAATTAAAAATCATAACTCTTAACTTAAAAA
61 AACC-AATTTAACTTAAAAACCCTAACCTAACTT-AATTAAAAACCCTAACCCTTAACTTAAAAA
14965609 CCCTAACCTAA
124 CCCTAACCTAA
* * * * *
14965620 TTTAATTAAAAACCCTAAACCTTAA--ACTTAAAAACCCTAACCCCTTAACTTAAAAACTCTAAC
1 TTAAATTAAAAACCCT-AACC-TAATTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAAC
** * *
14965683 CTAA-TTAACTTAAAAACCCTAACC-CCCTTAACTTAAAAACCCTAACCTAATTAACTTTAAAAC
64 C-AATTTAACTTAAAAACCCTAACCTAACTTAA-TTAAAAACCCTAACC--CTTAACTTAAAAAC
14965746 CCTAACCTAA
125 CCTAACCTAA
* *
14965756 TTAAATTAAAAACCCTAACTTAATTTAATTAAAAATCCTAAACCCTAAACTTAAAAACCCTAACC
1 TTAAATTAAAAACCCTAACCTAA-TTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACC
* *
14965821 TAATTTAA-TTAAAAACTCTAACCCTAAACTT-A--AAAAA-CCTAACCCCCTGAACTTAAAAAC
65 -AATTTAACTTAAAAACCCTAA-CCT-AACTTAATTAAAAACCCTAA--CCCTTAACTTAAAAAC
14965881 CCTAACCTAA
125 CCTAACCTAA
* * *
14965891 TTAACTTAAAAACCCTAACCTAATTAACTTAAAAACCCTAACCCCATTAACTTAAAAACCCTAAC
1 TTAAATTAAAAACCCTAACCTAATTAA-TTAAAAACCCTAAACCC-TAAACTTAAAAACCCTAAC
* *
14965956 C--CTTAACTTAAAAACACTAAACC---CTTAACTTAAAAACCCTAACCTCCTTAACTTAAAAAC
64 CAATTTAACTTAAAAACCCT-AACCTAACTTAA-TTAAAAACCCTAA-C-CCTTAACTTAAAAAC
* *
14966016 ACTAAACC--C
125 CCT-AACCTAA
* * * * * *
14966025 TTAACTTAAAAACCCTAACC--CTTAACTTAAAAATCCTAACCCCTTTAACTTCAAAACCCTAAC
1 TTAAATTAAAAACCCTAACCTAATTAA-TTAAAAACCCTAAACCC-TAAACTTAAAAACCCTAAC
* * *
14966088 C--CTTAACTAAAAAACACTAAACC---CTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCC
64 CAATTTAACTTAAAAACCCT-AACCTAACTTAA-TTAAAAACCCTAACCCTTAACTTAAAAACCC
14966148 TAACCTAA
127 TAACCTAA
* *
14966156 TTTAATTAAAAACCCTAAACTAAATTAAT
1 TTAAATTAAAAACCCTAACCT-AATTAAT
14966185 AATTTTACTT
Statistics
Matches: 818, Mismatches: 85, Indels: 118
0.80 0.08 0.12
Matches are distributed among these distances:
125 3 0.00
126 27 0.03
127 11 0.01
128 5 0.01
129 16 0.02
130 83 0.10
131 53 0.06
132 86 0.11
133 19 0.02
134 105 0.13
135 266 0.33
136 75 0.09
137 59 0.07
138 6 0.01
139 1 0.00
140 3 0.00
ACGTcount: A:0.47, C:0.26, G:0.00, T:0.26
Consensus pattern (134 bp):
TTAAATTAAAAACCCTAACCTAATTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCA
ATTTAACTTAAAAACCCTAACCTAACTTAATTAAAAACCCTAACCCTTAACTTAAAAACCCTAAC
CTAA
Found at i:14965349 original size:39 final size:38
Alignment explanation
Indices: 14965294--14965371 Score: 95
Period size: 39 Copynumber: 2.0 Consensus size: 38
14965284 TAACCCCTTT
* * *
14965294 AACTTTAAAACCCTAACCTAATTTAA-TTAAAAAACCCTA
1 AACTTAAAAACACTAACC-AACTTAACTT-AAAAACCCTA
*
14965333 AACTTAAAAACACTAACCACCTTAACTTAAAAACCCTA
1 AACTTAAAAACACTAACCAACTTAACTTAAAAACCCTA
14965371 A
1 A
14965372 CCTAATTAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
38 16 0.47
39 18 0.53
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (38 bp):
AACTTAAAAACACTAACCAACTTAACTTAAAAACCCTA
Found at i:14965391 original size:18 final size:18
Alignment explanation
Indices: 14965370--14965412 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
14965360 TAAAAACCCT
*
14965370 AACCTAATTAACTTAAAA
1 AACCTAATTAAATTAAAA
14965388 AACCTAATTAAATTAAAA
1 AACCTAATTAAATTAAAA
*
14965406 ACCCTAA
1 AACCTAA
14965413 CCTAATTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.26
Consensus pattern (18 bp):
AACCTAATTAAATTAAAA
Found at i:14966178 original size:23 final size:23
Alignment explanation
Indices: 14966133--14966184 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 23
14966123 ACCCTAACCC
* *
14966133 TTAACTTAAAAACCCTAACCTAAT
1 TTAA-TTAAAAACCCTAAACTAAA
14966157 TTAATTAAAAACCCTAAACTAAA
1 TTAATTAAAAACCCTAAACTAAA
14966180 TTAAT
1 TTAAT
14966185 AATTTTACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 22 0.85
24 4 0.15
ACGTcount: A:0.50, C:0.19, G:0.00, T:0.31
Consensus pattern (23 bp):
TTAATTAAAAACCCTAAACTAAA
Found at i:14966318 original size:116 final size:116
Alignment explanation
Indices: 14966178--14966421 Score: 420
Period size: 116 Copynumber: 2.1 Consensus size: 116
14966168 CCCTAAACTA
* **
14966178 AATTAATAATTTTACTTTCACATAATGTTAGATTTAGAAAAATGTTTTTTCCTGGTACTAACAAT
1 AATTAATAATTTTACATTCACATAATGTTAGATTTAGAAAAATG-TTTTGACTGGTACTAACAAT
14966243 TAATAATTTTATATAATTTGATAATTTTT-CTAA-TCATTAATACAATTTATC
65 TAATAATTTTATATAATTTGATAATTTTTACTAACT-ATTAATACAATTTATC
*
14966294 ATTTAATAATTTTACATTCACATAATGTTAGATTTAGAAAAATGTTTTGACTGGTACTAACAATT
1 AATTAATAATTTTACATTCACATAATGTTAGATTTAGAAAAATGTTTTGACTGGTACTAACAATT
14966359 AATAATTTTATATAATTTGATAATTTTTACTAACTATTAATACAATTTATC
66 AATAATTTTATATAATTTGATAATTTTTACTAACTATTAATACAATTTATC
14966410 AATTAATAATTT
1 AATTAATAATTT
14966422 CACAAACTTA
Statistics
Matches: 121, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
115 47 0.39
116 73 0.60
117 1 0.01
ACGTcount: A:0.39, C:0.09, G:0.06, T:0.46
Consensus pattern (116 bp):
AATTAATAATTTTACATTCACATAATGTTAGATTTAGAAAAATGTTTTGACTGGTACTAACAATT
AATAATTTTATATAATTTGATAATTTTTACTAACTATTAATACAATTTATC
Found at i:14969650 original size:124 final size:125
Alignment explanation
Indices: 14969430--14969806 Score: 562
Period size: 124 Copynumber: 3.0 Consensus size: 125
14969420 CCCAAACATG
* *
14969430 CTACTATAGCAAAAGCGCGTCCACGAGGGCTCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
* * *
14969495 CGAGAAGCGATATTATACTATTTACTCAGAAACGT-TAAAAAAATTATTTCTTCCATGAC
66 CTAGAAGCGATTTTATACTATTTACTCAGAAACGTCAAAAAAAATTATTTCTTCCATGAC
* * *
14969554 CTACTGTAGAAAAAGTGCGTCCACGGGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
*
14969619 CTAGAAGCGATTTTATACTATTTTCTCAGAAACGTCAAAAAAAATTATTTCTTCCATGAC
66 CTAGAAGCGATTTTATACTATTTACTCAGAAACGTCAAAAAAAATTATTTCTTCCATGAC
* * *
14969679 CTATTGTAGCAAAAGCGCGTCCACTAGGGCGCGA-TTTCACAAATTCTTCTCAAATAGCATCCTA
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
* *** *
14969743 CTAGAAGCGATTTTATACTATTTGA-TCAGAAACATCAACTCGAAATTATTTCTTCCAGGAC
66 CTAGAAGCGATTTTATACTATTT-ACTCAGAAACGTCAA-AAAAAATTATTTCTTCCATGAC
14969804 CTA
1 CTA
14969807 AAAAGCCTGG
Statistics
Matches: 229, Mismatches: 21, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
124 156 0.68
125 73 0.32
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.30
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
CTAGAAGCGATTTTATACTATTTACTCAGAAACGTCAAAAAAAATTATTTCTTCCATGAC
Found at i:14972912 original size:49 final size:49
Alignment explanation
Indices: 14972859--14972957 Score: 117
Period size: 49 Copynumber: 2.0 Consensus size: 49
14972849 CGAGTTGAAA
* * *
14972859 TATAACTAGGGCTCCTAGTTGACAGTAGTTATGCGGTCATGGATTCAAG
1 TATAACTAGAGCCCCTAGTTGACAGTAGTTATGCGATCATGGATTCAAG
* ** * * *
14972908 TATAACTCGAGCCCCTAGTTGATGGTGGTTATGTGATCATGGGTTCAAG
1 TATAACTAGAGCCCCTAGTTGACAGTAGTTATGCGATCATGGATTCAAG
14972957 T
1 T
14972958 TAGAAACTGT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.32
Consensus pattern (49 bp):
TATAACTAGAGCCCCTAGTTGACAGTAGTTATGCGATCATGGATTCAAG
Found at i:14974378 original size:49 final size:49
Alignment explanation
Indices: 14974323--14974421 Score: 126
Period size: 49 Copynumber: 2.0 Consensus size: 49
14974313 CGAGTTGAAA
* *
14974323 TATAACTAGGGCTCCTAGTTGACAGTAGTTATGCGATCATGGATTCAAG
1 TATAACTAGAGCCCCTAGTTGACAGTAGTTATGCGATCATGGATTCAAG
* ** * * *
14974372 TATAACTCGAGCCCCTAGTTGATGGTGGTTATGTGATCATGGGTTCAAG
1 TATAACTAGAGCCCCTAGTTGACAGTAGTTATGCGATCATGGATTCAAG
14974421 T
1 T
14974422 TAGAAACTGT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.32
Consensus pattern (49 bp):
TATAACTAGAGCCCCTAGTTGACAGTAGTTATGCGATCATGGATTCAAG
Found at i:14977296 original size:49 final size:49
Alignment explanation
Indices: 14977243--14977341 Score: 117
Period size: 49 Copynumber: 2.0 Consensus size: 49
14977233 CGAGTTGAAA
* * *
14977243 TATAACTAGGGCTCCTAGTTGACAGTAGTTATGCGGTCATGGATTCAAG
1 TATAACTAGAGCCCCTAGTTGACAGTAGTTATGCGATCATGGATTCAAG
* ** * * *
14977292 TATAACTCGAGCCCCTAGTTGATGGTGGTTATGTGATCATGGGTTCAAG
1 TATAACTAGAGCCCCTAGTTGACAGTAGTTATGCGATCATGGATTCAAG
14977341 T
1 T
14977342 TAGAAACTGT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.32
Consensus pattern (49 bp):
TATAACTAGAGCCCCTAGTTGACAGTAGTTATGCGATCATGGATTCAAG
Found at i:14978755 original size:49 final size:49
Alignment explanation
Indices: 14978702--14978800 Score: 126
Period size: 49 Copynumber: 2.0 Consensus size: 49
14978692 CGAGTTGAAA
* * *
14978702 TATAACTAGGGCTCCTAGTTGACAGTAGTTATGCGGTCATGGGTTCAAG
1 TATAACTAGAGCCCCTAGTTGACAGTAGTTATGCGATCATGGGTTCAAG
* ** * *
14978751 TATAACTCGAGCCCCTAGTTGATGGTGGTTATGTGATCATGGGTTCAAG
1 TATAACTAGAGCCCCTAGTTGACAGTAGTTATGCGATCATGGGTTCAAG
14978800 T
1 T
14978801 TAGAAACTGT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.32
Consensus pattern (49 bp):
TATAACTAGAGCCCCTAGTTGACAGTAGTTATGCGATCATGGGTTCAAG
Found at i:14984622 original size:49 final size:49
Alignment explanation
Indices: 14984569--14984667 Score: 126
Period size: 49 Copynumber: 2.0 Consensus size: 49
14984559 CGAGTTGAAA
* * *
14984569 TATAACTAGGGCTCCTAGTTGACAGTAGTTATGCGGTCATGGGTTCAAG
1 TATAACTAGAGCCCCTAGTTGACAGTAGTTATGCGATCATGGGTTCAAG
* ** * *
14984618 TATAACTCGAGCCCCTAGTTGATGGTGGTTATGTGATCATGGGTTCAAG
1 TATAACTAGAGCCCCTAGTTGACAGTAGTTATGCGATCATGGGTTCAAG
14984667 T
1 T
14984668 TAGAAACTGT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.32
Consensus pattern (49 bp):
TATAACTAGAGCCCCTAGTTGACAGTAGTTATGCGATCATGGGTTCAAG
Found at i:14986688 original size:17 final size:17
Alignment explanation
Indices: 14986666--14986699 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14986656 TTACAAAATC
*
14986666 ATATATGAATATATATT
1 ATATATAAATATATATT
*
14986683 ATATATAAATATTTATT
1 ATATATAAATATATATT
14986700 TAGTGACCTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (17 bp):
ATATATAAATATATATT
Found at i:14986823 original size:5 final size:5
Alignment explanation
Indices: 14986813--14986857 Score: 83
Period size: 5 Copynumber: 9.2 Consensus size: 5
14986803 CCATGCATAT
14986813 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA -TATA T
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA T
14986858 AACACCAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 4 0.10
5 35 0.90
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TTATA
Found at i:14986929 original size:35 final size:34
Alignment explanation
Indices: 14986875--14986950 Score: 89
Period size: 35 Copynumber: 2.2 Consensus size: 34
14986865 AAAACCATGT
* * * * * *
14986875 ATATATATTATATATAATAAAGTCCATGCATATAA
1 ATATATTTTACATACAATAAAGCCCACGCACAT-A
14986910 ATATATTTTACATACAATAAAGCCCACGCACATA
1 ATATATTTTACATACAATAAAGCCCACGCACATA
14986944 ATATATT
1 ATATATT
14986951 ATATATATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
34 8 0.23
35 27 0.77
ACGTcount: A:0.46, C:0.14, G:0.05, T:0.34
Consensus pattern (34 bp):
ATATATTTTACATACAATAAAGCCCACGCACATA
Found at i:14988352 original size:21 final size:20
Alignment explanation
Indices: 14988299--14988353 Score: 67
Period size: 21 Copynumber: 2.8 Consensus size: 20
14988289 ACATCTTTTT
14988299 CAGAAGCCCG-AAGGCTAAA
1 CAGAAGCCCGTAAGGCTAAA
* *
14988318 CAGAAGCACATAAGTGCTAAA
1 CAGAAGCCCGTAAG-GCTAAA
*
14988339 CAGAAACCCGTAAGG
1 CAGAAGCCCGTAAGG
14988354 GTTGTACGGA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 8 0.28
20 4 0.14
21 17 0.59
ACGTcount: A:0.44, C:0.24, G:0.24, T:0.09
Consensus pattern (20 bp):
CAGAAGCCCGTAAGGCTAAA
Found at i:14994290 original size:27 final size:27
Alignment explanation
Indices: 14994259--14994436 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
14994249 TAAATTGTAC
14994259 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
14994286 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14994312 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
14994340 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
14994368 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14994395 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
14994422 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
14994437 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:14994373 original size:82 final size:81
Alignment explanation
Indices: 14994260--14994415 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
14994250 AAATTGTACA
* *
14994260 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
14994324 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
14994341 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
14994406 TGCGAGTTGA
65 TGCGAATTGA
14994416 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:14994427 original size:82 final size:81
Alignment explanation
Indices: 14994256--14994436 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
14994246 GATTAAATTG
* *
14994256 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
14994321 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
14994337 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
14994401 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
14994419 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
14994437 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:15002472 original size:27 final size:27
Alignment explanation
Indices: 15002441--15002618 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
15002431 TAAATTGTAC
15002441 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
15002468 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
15002494 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
15002522 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
15002550 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
15002577 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
15002604 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
15002619 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:15002555 original size:82 final size:81
Alignment explanation
Indices: 15002442--15002597 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
15002432 AAATTGTACA
* *
15002442 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
15002506 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
15002523 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
15002588 TGCGAGTTGA
65 TGCGAATTGA
15002598 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:15002609 original size:82 final size:81
Alignment explanation
Indices: 15002438--15002618 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
15002428 GATTAAATTG
* *
15002438 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
15002503 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
15002519 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
15002583 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
15002601 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
15002619 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:15004104 original size:16 final size:16
Alignment explanation
Indices: 15004080--15004128 Score: 80
Period size: 16 Copynumber: 3.1 Consensus size: 16
15004070 TTCGCTATAT
* *
15004080 TGGATTAGAGGCGTAA
1 TGGAATAGAGGTGTAA
15004096 TGGAATAGAGGTGTAA
1 TGGAATAGAGGTGTAA
15004112 TGGAATAGAGGTGTAA
1 TGGAATAGAGGTGTAA
15004128 T
1 T
15004129 AGCAAATCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.35, C:0.02, G:0.37, T:0.27
Consensus pattern (16 bp):
TGGAATAGAGGTGTAA
Found at i:15004381 original size:18 final size:17
Alignment explanation
Indices: 15004360--15004394 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
15004350 TTATTATTAA
*
15004360 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
15004378 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
15004395 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:15004525 original size:15 final size:16
Alignment explanation
Indices: 15004505--15004534 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
15004495 AATATATGAT
15004505 TAATAAA-ATTCTTAA
1 TAATAAATATTCTTAA
15004520 TAATAAATATTCTTA
1 TAATAAATATTCTTA
15004535 TATGAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (16 bp):
TAATAAATATTCTTAA
Found at i:15004558 original size:119 final size:120
Alignment explanation
Indices: 15004340--15004625 Score: 477
Period size: 119 Copynumber: 2.4 Consensus size: 120
15004330 TTAATCATAT
15004340 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
* * *
15004405 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* *
15004460 TTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGA-TTAATAAAATTCTTAATAA
1 TTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
*
15004523 TAAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAATATAA
65 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* *
15004579 TTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTT
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTT
15004626 CAATTACTTA
Statistics
Matches: 153, Mismatches: 10, Indels: 6
0.91 0.06 0.04
Matches are distributed among these distances:
118 2 0.01
119 108 0.71
120 41 0.27
121 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.44
Consensus pattern (120 bp):
TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:15012420 original size:23 final size:23
Alignment explanation
Indices: 15012388--15012442 Score: 92
Period size: 23 Copynumber: 2.3 Consensus size: 23
15012378 ATTGAGCTAC
*
15012388 AACCGGATATGACTTACTCGAAAG
1 AACC-GATATGACGTACTCGAAAG
15012412 AACCGATATGACGTACTCGAAAG
1 AACCGATATGACGTACTCGAAAG
15012435 AACCGATA
1 AACCGATA
15012443 AGAATTTTGG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 26 0.87
24 4 0.13
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.18
Consensus pattern (23 bp):
AACCGATATGACGTACTCGAAAG
Found at i:15013770 original size:105 final size:101
Alignment explanation
Indices: 15013560--15013777 Score: 226
Period size: 105 Copynumber: 2.1 Consensus size: 101
15013550 AATTGACAGG
* * * * *
15013560 GTAAGACCATGGTTGGACCATGACAATGTTTAAATGTAAGACCATAGCTGGGTTATGGCATTTTA
1 GTAAGACCATGGTTGGACCATGACAATATATAAATGTAAGACCATAGCTGGGATATGACATTTGA
**
15013625 GTGAAAAGACCATAACTGGATTATGACACCTTGAAC
66 GTGAAAAGACCATAACTGGATTATGACACCTCAAAC
* * *
15013661 GTAAGACCATGGTTGGACCATGGCAATATAGATACATGTGTAAGACCATAGTTGGGATATGACAT
1 GTAAGACCATGGTTGGACCATGACAATAT--ATA-A-ATGTAAGACCATAGCTGGGATATGACAT
* * * *
15013726 TCTGA-TGATAAGACCATAAGTAGG-TTATGGCA-CTACAAAT
62 T-TGAGTGAAAAGACCATAACT-GGATTATGACACCT-CAAAC
15013766 GTAAGACCATGG
1 GTAAGACCATGG
15013778 CAATGCATAT
Statistics
Matches: 96, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
101 27 0.28
103 2 0.02
104 3 0.03
105 60 0.62
106 4 0.04
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (101 bp):
GTAAGACCATGGTTGGACCATGACAATATATAAATGTAAGACCATAGCTGGGATATGACATTTGA
GTGAAAAGACCATAACTGGATTATGACACCTCAAAC
Found at i:15013777 original size:22 final size:22
Alignment explanation
Indices: 15013752--15013797 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
15013742 TAAGTAGGTT
*
15013752 ATGGCACTACAAATGTAAGACC
1 ATGGCAATACAAATGTAAGACC
* *
15013774 ATGGCAATGCATATGTAAGACC
1 ATGGCAATACAAATGTAAGACC
15013796 AT
1 AT
15013798 AGTTGGACTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.22
Consensus pattern (22 bp):
ATGGCAATACAAATGTAAGACC
Found at i:15014467 original size:78 final size:78
Alignment explanation
Indices: 15014338--15014497 Score: 284
Period size: 78 Copynumber: 2.1 Consensus size: 78
15014328 ATGTTATGTC
15014338 ATGTTGAGAACATGTTTTAGCTTGTATTGATTACTTGGTTGGGATATATTAGTATATGTGAATGT
1 ATGTTGAGAACATGTTTTAGCTTGTATTGATTACTTGGTTGGGATATATTAGTATATGTGAATGT
*
15014403 TGAGTGCAGGTTA
66 TGAGTGAAGGTTA
* * *
15014416 ATGTTGAGAACATGTTTTGGCTTGTATTGATTACTTGGTTGGGTTATATTAGTGTATGTGAATGT
1 ATGTTGAGAACATGTTTTAGCTTGTATTGATTACTTGGTTGGGATATATTAGTATATGTGAATGT
15014481 TGAGTGAAGGTTA
66 TGAGTGAAGGTTA
15014494 ATGT
1 ATGT
15014498 CAAAATGGGT
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 78 1.00
ACGTcount: A:0.24, C:0.04, G:0.28, T:0.43
Consensus pattern (78 bp):
ATGTTGAGAACATGTTTTAGCTTGTATTGATTACTTGGTTGGGATATATTAGTATATGTGAATGT
TGAGTGAAGGTTA
Found at i:15015955 original size:144 final size:144
Alignment explanation
Indices: 15015695--15015983 Score: 524
Period size: 144 Copynumber: 2.0 Consensus size: 144
15015685 AGACATTTTT
*
15015695 TATCAACCCAATCTATAGAATTGGTTTTCAACCAGAGCACAAAATTGCACGAGCTTCGATCAAGA
1 TATCAACACAATCTATAGAATTGGTTTTCAACCAGAGCACAAAATTGCACGAGCTTCGATCAAGA
15015760 ATTAGAAGGAAAGTGTCGACTTCAAGCTAGAGAAGATTTTCAAGCTTGAAATATAGATATCTAAT
66 ATTAGAAGGAAAGTGTCGACTTCAAGCTAGAGAAGATTTTCAAGCTTGAAATATAGATATCTAAT
15015825 GTCACTAAACCCTG
131 GTCACTAAACCCTG
* *
15015839 TATCAACACAATCTATAGATTTGGTTTTCAACCAGAGCATAAAATTGCACGAGCTTCGATCAAGA
1 TATCAACACAATCTATAGAATTGGTTTTCAACCAGAGCACAAAATTGCACGAGCTTCGATCAAGA
* * *
15015904 ATTAGAAGGAAAGTGTCGACTTCAAGTTAGAGAAGATTTTCGATCTTGAAATATAGATATCTAAT
66 ATTAGAAGGAAAGTGTCGACTTCAAGCTAGAGAAGATTTTCAAGCTTGAAATATAGATATCTAAT
15015969 GTCACTAAACCCTG
131 GTCACTAAACCCTG
15015983 T
1 T
15015984 TAGATATGAT
Statistics
Matches: 139, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
144 139 1.00
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (144 bp):
TATCAACACAATCTATAGAATTGGTTTTCAACCAGAGCACAAAATTGCACGAGCTTCGATCAAGA
ATTAGAAGGAAAGTGTCGACTTCAAGCTAGAGAAGATTTTCAAGCTTGAAATATAGATATCTAAT
GTCACTAAACCCTG
Found at i:15019022 original size:50 final size:50
Alignment explanation
Indices: 15018952--15019077 Score: 173
Period size: 50 Copynumber: 2.5 Consensus size: 50
15018942 TTTGGAAAGT
* * *
15018952 AAGATTCGCCATTGTTGCTTTAATCTTTTTAACTT-CAATGTCGGGGAAGC
1 AAGATTCGCCGTTGTAGCTTTAATCTTTTTAA-TTGCAATATCGGGGAAGC
* *
15019002 ATGATTCGCTGTTGTAGCTTTAATCTTTTTAATTGCAATATCGGGGAAGC
1 AAGATTCGCCGTTGTAGCTTTAATCTTTTTAATTGCAATATCGGGGAAGC
* *
15019052 AAGATTCACCGTTGTGGCTTTAATCT
1 AAGATTCGCCGTTGTAGCTTTAATCT
15019078 GCTTTACTGC
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
49 2 0.03
50 64 0.97
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.39
Consensus pattern (50 bp):
AAGATTCGCCGTTGTAGCTTTAATCTTTTTAATTGCAATATCGGGGAAGC
Found at i:15019409 original size:142 final size:142
Alignment explanation
Indices: 15019153--15019707 Score: 966
Period size: 142 Copynumber: 3.9 Consensus size: 142
15019143 GAGATAAGAC
* *
15019153 CTGATGTGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTCTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
* *
15019218 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGTTGTAATCTTAGGGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
*
15019283 TTTGGCTTCAAT
131 TCTGGCTTCAAT
* *
15019295 CTGATGTGATCTACTCTACTATAACTTCAGAGCGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
* *
15019360 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTTAGAGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
15019425 TCTGGCTTCAAT
131 TCTGGCTTCAAT
*
15019437 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
* * *
15019502 TAATCCCCGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGTGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
15019567 TCTGGCTTCAAT
131 TCTGGCTTCAAT
* * *
15019579 CTGATGCAATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTA
1 CTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
15019644 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
15019708 CTGTAATTTC
Statistics
Matches: 395, Mismatches: 18, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
142 395 1.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.33
Consensus pattern (142 bp):
CTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
TCTGGCTTCAAT
Found at i:15019418 original size:44 final size:44
Alignment explanation
Indices: 15019346--15019707 Score: 187
Period size: 44 Copynumber: 7.8 Consensus size: 44
15019336 CCTTTATTTT
* * *
15019346 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGAGAGATAAGATTACTAGCTTC
* * * *
15019390 AATCTGCTCCGCTGTAATCTTAGAGAGATAAGATTTCTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGAGAGATAAGATTACTAGCTTC
* * *
15019434 AATCTGATGCGATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTA-TTTT
1 AATC---T--G--CT-C-C-ACTGTAATC-TCAGAGAGATAAGAT--TACTAGCTTC
* * * * *
15019488 AATCCGCTCCACTGTAATCCCCGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGAGAGATAAGATTACTAGCTTC
* * * * *
15019532 AATCTGCTCCGCTGTAATCTCAGGGTGATAAGATTTCTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGAGAGATAAGATTACTAGCTTC
* * *
15019576 AATCTGATGCAATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTA-TTTT
1 AATC---TG----CT-C-C-ACTGTAATC-TCAGAGAGATAAGAT--TACTAGCTTC
* * * *
15019630 AATCCGCTCCACTATAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGAGAGATAAGATTACTAGCTTC
* *
15019674 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
1 AATCTGCTCCACTGTAATCTCAGAGAGATAAGAT
15019708 CTGTAATTTC
Statistics
Matches: 239, Mismatches: 47, Indels: 64
0.68 0.13 0.18
Matches are distributed among these distances:
42 2 0.01
43 4 0.02
44 152 0.64
45 4 0.02
46 2 0.01
47 7 0.03
49 2 0.01
51 5 0.02
52 2 0.01
53 4 0.02
54 51 0.21
55 2 0.01
56 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.31
Consensus pattern (44 bp):
AATCTGCTCCACTGTAATCTCAGAGAGATAAGATTACTAGCTTC
Found at i:15020969 original size:13 final size:13
Alignment explanation
Indices: 15020936--15020976 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
15020926 TTAGCCTCTC
15020936 CATTTTTACTCTTT
1 CATTTTT-CTCTTT
*
15020950 CATTTTTCTTTTT
1 CATTTTTCTCTTT
15020963 CATTTTTCATCTTT
1 CATTTTTC-TCTTT
15020977 TTTTTTGGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.12, C:0.20, G:0.00, T:0.68
Consensus pattern (13 bp):
CATTTTTCTCTTT
Found at i:15021838 original size:28 final size:29
Alignment explanation
Indices: 15021807--15021882 Score: 75
Period size: 30 Copynumber: 2.6 Consensus size: 29
15021797 TCTTTTTTCA
*
15021807 TTTTCATTTTGACTTTGATTGATTTC-TC
1 TTTTTATTTTGACTTTGATTGATTTCTTC
**
15021835 TTTTTTACTTTTGACTTTGATTTTTTTCTTC
1 -TTTTTA-TTTTGACTTTGATTGATTTCTTC
* *
15021866 -TTTTGTTTTGATTTTGA
1 TTTTTATTTTGACTTTGA
15021883 GTTTTTTTTG
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
28 11 0.28
29 9 0.22
30 18 0.45
31 2 0.05
ACGTcount: A:0.12, C:0.11, G:0.11, T:0.67
Consensus pattern (29 bp):
TTTTTATTTTGACTTTGATTGATTTCTTC
Found at i:15021863 original size:30 final size:28
Alignment explanation
Indices: 15021799--15021890 Score: 89
Period size: 28 Copynumber: 3.1 Consensus size: 28
15021789 TTTTTCTCTC
15021799 TTTT-TTCATTTTCATTTTGACTTTGATTGAT
1 TTTTCTTC-TTTTC-TTTTGACTTTGATT--T
*
15021830 TTCTCTT-TTTTACTTTTGACTTTGATTT
1 TTTTCTTCTTTT-CTTTTGACTTTGATTT
* *
15021858 TTTTCTTCTTTTGTTTTGATTTTGAGTTT
1 TTTTCTTCTTTTCTTTTGACTTTGA-TTT
15021887 TTTT
1 TTTT
15021891 TGCTCCCTTT
Statistics
Matches: 53, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
28 18 0.34
29 11 0.21
30 18 0.34
31 4 0.08
32 2 0.04
ACGTcount: A:0.11, C:0.10, G:0.10, T:0.70
Consensus pattern (28 bp):
TTTTCTTCTTTTCTTTTGACTTTGATTT
Found at i:15026302 original size:23 final size:23
Alignment explanation
Indices: 15026272--15026320 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
15026262 GCAAAGGTGA
15026272 TAATTTGAAAATAAAACACACAT
1 TAATTTGAAAATAAAACACACAT
15026295 TAATTTGAAAATAAAACACACAT
1 TAATTTGAAAATAAAACACACAT
15026318 TAA
1 TAA
15026321 CGAATCATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.57, C:0.12, G:0.04, T:0.27
Consensus pattern (23 bp):
TAATTTGAAAATAAAACACACAT
Found at i:15035774 original size:42 final size:42
Alignment explanation
Indices: 15035678--15035832 Score: 141
Period size: 42 Copynumber: 3.7 Consensus size: 42
15035668 GCACATAAGT
* * * * * ** *
15035678 GCTAAACGGAAACTCATAAAGGTTGAACGAAAGCTCCTAGGA
1 GCTAAACTGAAACCCATAAGGGTTAAACTAAAGCTCAAAAGA
* * *
15035720 GCTTAACAGAAACCTATAAGGGTTAAACTAAAGCTCAGAAA-A
1 GCTAAACTGAAACCCATAAGGGTTAAACTAAAGCTCA-AAAGA
* * *
15035762 GCTAAACTGAAACCCATTAGAGTTAAACTGAAGCTCAAAAGA
1 GCTAAACTGAAACCCATAAGGGTTAAACTAAAGCTCAAAAGA
* * *
15035804 GATGAACTGAAACCCAGAAGGGTTAAACT
1 GCTAAACTGAAACCCATAAGGGTTAAACT
15035833 GAAACTAATA
Statistics
Matches: 90, Mismatches: 21, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
41 3 0.03
42 86 0.96
43 1 0.01
ACGTcount: A:0.44, C:0.18, G:0.20, T:0.18
Consensus pattern (42 bp):
GCTAAACTGAAACCCATAAGGGTTAAACTAAAGCTCAAAAGA
Found at i:15035788 original size:21 final size:21
Alignment explanation
Indices: 15035764--15035837 Score: 76
Period size: 21 Copynumber: 3.5 Consensus size: 21
15035754 TCAGAAAAGC
**
15035764 TAAACTGAAACCCATTAGAGT
1 TAAACTGAAACCCAAAAGAGT
* * *
15035785 TAAACTGAAGCTCAAAAGAGA
1 TAAACTGAAACCCAAAAGAGT
* * *
15035806 TGAACTGAAACCCAGAAGGGT
1 TAAACTGAAACCCAAAAGAGT
15035827 TAAACTGAAAC
1 TAAACTGAAAC
15035838 TAATATGAGT
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.46, C:0.18, G:0.19, T:0.18
Consensus pattern (21 bp):
TAAACTGAAACCCAAAAGAGT
Found at i:15046378 original size:21 final size:21
Alignment explanation
Indices: 15046352--15046420 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 21
15046342 CACAGAAGCA
* *
15046352 CATAAGTGCTAAACGGAAACC
1 CATAAGAGCTGAACGGAAACC
* * * *
15046373 CATAAGGGTTGAACGGAAGCT
1 CATAAGAGCTGAACGGAAACC
* *
15046394 CACAAGAGCTGAACAGAAACC
1 CATAAGAGCTGAACGGAAACC
15046415 CATAAG
1 CATAAG
15046421 GGTTAAACTG
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.42, C:0.22, G:0.23, T:0.13
Consensus pattern (21 bp):
CATAAGAGCTGAACGGAAACC
Found at i:15046414 original size:42 final size:42
Alignment explanation
Indices: 15046367--15046478 Score: 138
Period size: 42 Copynumber: 2.7 Consensus size: 42
15046357 GTGCTAAACG
*
15046367 GAAACCCATAAGGGTTGAACGGAAGCTCACAAGAGCTGAACA
1 GAAACCCATAAGGGTTAAACGGAAGCTCACAAGAGCTGAACA
* * * *
15046409 GAAACCCATAAGGGTTAAACTGTAGCTCAGAAGAGCTGAACT
1 GAAACCCATAAGGGTTAAACGGAAGCTCACAAGAGCTGAACA
* *
15046451 GAAA-CC-TGAAGGGTTAAACTGAAACTCA
1 GAAACCCAT-AAGGGTTAAACGGAAGCTCA
15046479 TATGATTTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
40 1 0.02
41 20 0.32
42 41 0.66
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (42 bp):
GAAACCCATAAGGGTTAAACGGAAGCTCACAAGAGCTGAACA
Found at i:15048747 original size:20 final size:18
Alignment explanation
Indices: 15048722--15048761 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 18
15048712 TTATTTGGGG
15048722 ATGAAGGGTGAAAAGTAAAA
1 ATGAAGGG-GAAAA-TAAAA
15048742 ATGAAGGGGAAAATAAAA
1 ATGAAGGGGAAAATAAAA
15048760 AT
1 AT
15048762 TTTTGAGGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 7 0.35
19 5 0.25
20 8 0.40
ACGTcount: A:0.57, C:0.00, G:0.28, T:0.15
Consensus pattern (18 bp):
ATGAAGGGGAAAATAAAA
Found at i:15050875 original size:85 final size:85
Alignment explanation
Indices: 15050725--15050882 Score: 212
Period size: 85 Copynumber: 1.9 Consensus size: 85
15050715 AATATAACAT
* *
15050725 ACTTATGTTGTTGCAGGTATGTCACAGAATCATCTGAAATTGGATTCTAACCTAATATCTAACAT
1 ACTTATGTTGTTGCAGGTATGCCACAGAATCATCTGAAATTGGATTCTAACATAATATCTAACAT
*
15050790 TGTCTTACTTATTTTAAAAA
66 TATCTTACTTATTTTAAAAA
* * * * *
15050810 ACTTGTGTTGTTGCAGGTATGCCACA-AGATCAT-TCGAAATTGGATTCTGACATGATCTCTGAC
1 ACTTATGTTGTTGCAGGTATGCCACAGA-ATCATCT-GAAATTGGATTCTAACATAATATCTAAC
15050873 ATTATCTTAC
64 ATTATCTTAC
15050883 CTATGATGAA
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
84 2 0.03
85 61 0.97
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (85 bp):
ACTTATGTTGTTGCAGGTATGCCACAGAATCATCTGAAATTGGATTCTAACATAATATCTAACAT
TATCTTACTTATTTTAAAAA
Found at i:15052529 original size:77 final size:73
Alignment explanation
Indices: 15052438--15052697 Score: 227
Period size: 75 Copynumber: 3.6 Consensus size: 73
15052428 TCATTGTTTG
*
15052438 GTAAATTGTAAATAAGTATATATTGTTGATGTAAAATGCAACAAAATACAATATAAACATTTTTT
1 GTAAATTGTAAATAAGTATATATTGTTGATGTAAAATGCAATAAAATACAATAT-AA-A--TTTT
*
15052503 TTCATTTTTTTC
62 TTAATTTTTTTC
* * * * *
15052515 TTAGATTGTAAATAAGTATATTATTG-AGAATGCATACAATAG-AATAAACTACAA-ATAAATTT
1 GTAAATTGTAAATAAGTATA-TATTGTTG-ATG--TAAAAT-GCAATAAAATACAATATAAATTT
15052577 TTTAATTTTTTTC
61 TTTAATTTTTTTC
* * * *
15052590 GTAAATTGTAAATAAGTATATATTATTGATATAAAATACAATAGAATACAAT-T---TTTTTT-A
1 GTAAATTGTAAATAAGTATATATTGTTGATGTAAAATGCAATAAAATACAATATAAATTTTTTAA
15052650 TTTTTTT-
66 TTTTTTTC
* * * *
15052657 GTAGACTGTAAATAA--ATATATTATTGATGTAAAATACAATA
1 GTAAATTGTAAATAAGTATATATTGTTGATGTAAAATGCAATA
15052698 GAACTTTTTT
Statistics
Matches: 156, Mismatches: 19, Indels: 28
0.77 0.09 0.14
Matches are distributed among these distances:
65 25 0.16
67 13 0.08
68 8 0.05
69 6 0.04
72 16 0.10
74 6 0.04
75 34 0.22
77 20 0.13
78 10 0.06
79 2 0.01
80 15 0.10
81 1 0.01
ACGTcount: A:0.43, C:0.06, G:0.09, T:0.42
Consensus pattern (73 bp):
GTAAATTGTAAATAAGTATATATTGTTGATGTAAAATGCAATAAAATACAATATAAATTTTTTAA
TTTTTTTC
Found at i:15052700 original size:65 final size:67
Alignment explanation
Indices: 15052574--15052700 Score: 195
Period size: 65 Copynumber: 1.9 Consensus size: 67
15052564 TACAAATAAA
*
15052574 TTTTTTAATTTTTTTCGTAAATTGTAAATAAGTATATATTATTGATATAAAATACAATAGAATAC
1 TTTTTTAATTTTTTTCGTAAACTGTAAATAAG-ATATATTATTGATATAAAATACAATAGAATAC
15052639 AAT
65 AAT
* * *
15052642 TTTTTTTATTTTTTT-GTAGACTGTAAATAA-ATATATTATTGATGTAAAATACAATAGAA
1 TTTTTTAATTTTTTTCGTAAACTGTAAATAAGATATATTATTGATATAAAATACAATAGAA
15052701 CTTTTTTAAG
Statistics
Matches: 55, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
65 28 0.51
67 13 0.24
68 14 0.25
ACGTcount: A:0.41, C:0.04, G:0.09, T:0.46
Consensus pattern (67 bp):
TTTTTTAATTTTTTTCGTAAACTGTAAATAAGATATATTATTGATATAAAATACAATAGAATACA
AT
Found at i:15052918 original size:6 final size:6
Alignment explanation
Indices: 15052907--15052963 Score: 60
Period size: 6 Copynumber: 9.5 Consensus size: 6
15052897 CTCCTTATCT
* * * * *
15052907 TCTTCA TCTTCA TCTTCA TCTTCA CCTTCA CCTTTA TTTTGA TCTTCA
1 TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA
*
15052955 TATTCA TCT
1 TCTTCA TCT
15052964 CGTTCCTTCG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.18, C:0.30, G:0.02, T:0.51
Consensus pattern (6 bp):
TCTTCA
Found at i:15058476 original size:8 final size:7
Alignment explanation
Indices: 15058430--15058497 Score: 91
Period size: 7 Copynumber: 9.4 Consensus size: 7
15058420 AAGCTCAAAC
15058430 TAGGGTT
1 TAGGGTT
15058437 TAGGGTT
1 TAGGGTT
15058444 TAGGGTT
1 TAGGGTT
**
15058451 TATAGTT
1 TAGGGTT
*
15058458 TAGTGTT
1 TAGGGTT
15058465 TAGGGTTT
1 TAGGG-TT
15058473 TAGGGTTT
1 TAGGG-TT
15058481 TAGGGTT
1 TAGGGTT
15058488 TAGGGTT
1 TAGGGTT
15058495 TAG
1 TAG
15058498 TACTAATATA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
7 40 0.73
8 15 0.27
ACGTcount: A:0.16, C:0.00, G:0.37, T:0.47
Consensus pattern (7 bp):
TAGGGTT
Found at i:15067648 original size:15 final size:16
Alignment explanation
Indices: 15067624--15067659 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
15067614 TATATATTTG
*
15067624 AAAAAATTTTCAAAGC
1 AAAAATTTTTCAAAGC
*
15067640 AAAACTTTTTCAAAGC
1 AAAAATTTTTCAAAGC
15067656 AAAA
1 AAAA
15067660 TAATAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.56, C:0.14, G:0.06, T:0.25
Consensus pattern (16 bp):
AAAAATTTTTCAAAGC
Found at i:15067773 original size:11 final size:10
Alignment explanation
Indices: 15067743--15067803 Score: 54
Period size: 11 Copynumber: 6.1 Consensus size: 10
15067733 TTCTAGAAAA
15067743 TTTT-TAATT
1 TTTTATAATT
*
15067752 TTTTA-ACTT
1 TTTTATAATT
15067761 TTTTATATATT
1 TTTTATA-ATT
* *
15067772 TTTTAGATTT
1 TTTTATAATT
*
15067782 TTTTTTGAATT
1 TTTTAT-AATT
15067793 TTTTATAATT
1 TTTTATAATT
15067803 T
1 T
15067804 AAAAAAAATT
Statistics
Matches: 40, Mismatches: 8, Indels: 7
0.73 0.15 0.13
Matches are distributed among these distances:
9 12 0.30
10 12 0.30
11 16 0.40
ACGTcount: A:0.23, C:0.02, G:0.03, T:0.72
Consensus pattern (10 bp):
TTTTATAATT
Found at i:15074602 original size:18 final size:18
Alignment explanation
Indices: 15074571--15074609 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
15074561 GGCGTGTAGG
* *
15074571 CCACATGGGTATGTGGAC
1 CCACACGGGCATGTGGAC
*
15074589 CCACACGGGCATGTGGGC
1 CCACACGGGCATGTGGAC
15074607 CCA
1 CCA
15074610 AAAATTTTGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.31, G:0.33, T:0.15
Consensus pattern (18 bp):
CCACACGGGCATGTGGAC
Found at i:15084482 original size:19 final size:19
Alignment explanation
Indices: 15084445--15084482 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
15084435 AGAAAAATGG
*
15084445 TGGAAGCAATGAAAGAATA
1 TGGAAGCAATGAAACAATA
15084464 TGGAA-CAATGAATACAATA
1 TGGAAGCAATGAA-ACAATA
15084483 ATTTAGAGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.53, C:0.08, G:0.21, T:0.18
Consensus pattern (19 bp):
TGGAAGCAATGAAACAATA
Found at i:15088620 original size:27 final size:27
Alignment explanation
Indices: 15088582--15088636 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
15088572 TTAAGAGTCC
**
15088582 ATTCGTAATATTTTCTAGTACTTTGCA
1 ATTCGTAATATTTGATAGTACTTTGCA
15088609 ATTCGTAATATTTGATAGTACTTTGCA
1 ATTCGTAATATTTGATAGTACTTTGCA
15088636 A
1 A
15088637 AGGTATTTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.45
Consensus pattern (27 bp):
ATTCGTAATATTTGATAGTACTTTGCA
Found at i:15090439 original size:15 final size:15
Alignment explanation
Indices: 15090419--15090461 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
15090409 TCTTATATAC
* *
15090419 TGAAACTTTAGATTG
1 TGAAACTATAGATTA
*
15090434 TGAAACTATAGACTA
1 TGAAACTATAGATTA
15090449 TGAAACTATAGAT
1 TGAAACTATAGAT
15090462 AGGAAACTGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.42, C:0.09, G:0.16, T:0.33
Consensus pattern (15 bp):
TGAAACTATAGATTA
Found at i:15090469 original size:14 final size:14
Alignment explanation
Indices: 15090420--15090469 Score: 55
Period size: 15 Copynumber: 3.4 Consensus size: 14
15090410 CTTATATACT
* *
15090420 GAAACTTTAGATTG
1 GAAACTATAGATAG
*
15090434 TGAAACTATAGACTAT
1 -GAAACTATAGA-TAG
15090450 GAAACTATAGATAG
1 GAAACTATAGATAG
15090464 GAAACT
1 GAAACT
15090470 GTGACTAAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
14 8 0.27
15 21 0.70
16 1 0.03
ACGTcount: A:0.44, C:0.10, G:0.18, T:0.28
Consensus pattern (14 bp):
GAAACTATAGATAG
Found at i:15092664 original size:23 final size:23
Alignment explanation
Indices: 15092633--15092846 Score: 214
Period size: 23 Copynumber: 9.3 Consensus size: 23
15092623 AGTGTTATTG
* *
15092633 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTACAGCTACAT
* * *
15092656 TTCAATGGTAGCTACAGCTACGT
1 ATCAGTGGTAGCTACAGCTACAT
*
15092679 ATCAGTGGTAGCTACAGCTACGT
1 ATCAGTGGTAGCTACAGCTACAT
*
15092702 ATCAGTGGTAGCTACAGCTACGT
1 ATCAGTGGTAGCTACAGCTACAT
* *
15092725 ATCAGTGGCAGCTTC-GACTACAT
1 ATCAGTGGTAGCTACAG-CTACAT
* * *
15092748 TTCAATGGTAGCTACAGTTACAT
1 ATCAGTGGTAGCTACAGCTACAT
* * *
15092771 GTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTACAGCTACAT
* * * * *
15092794 TTTAGTGGTAGCTACGGCTGCGT
1 ATCAGTGGTAGCTACAGCTACAT
* *
15092817 ATCAGTGGTAGCTTCTGCTACAT
1 ATCAGTGGTAGCTACAGCTACAT
15092840 ATCAGTG
1 ATCAGTG
15092847 TGGCACTTAT
Statistics
Matches: 158, Mismatches: 31, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
22 1 0.01
23 156 0.99
24 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.30
Consensus pattern (23 bp):
ATCAGTGGTAGCTACAGCTACAT
Found at i:15092686 original size:46 final size:46
Alignment explanation
Indices: 15092633--15092839 Score: 279
Period size: 46 Copynumber: 4.5 Consensus size: 46
15092623 AGTGTTATTG
15092633 ATCAGTGGTAGCTTCGGCTACATTTCAATGGTAGCTACAGCTACGT
1 ATCAGTGGTAGCTTCGGCTACATTTCAATGGTAGCTACAGCTACGT
* * * * *
15092679 ATCAGTGGTAGCTACAGCTACGTATCAGTGGTAGCTACAGCTACGT
1 ATCAGTGGTAGCTTCGGCTACATTTCAATGGTAGCTACAGCTACGT
* * * *
15092725 ATCAGTGGCAGCTTCGACTACATTTCAATGGTAGCTACAGTTACAT
1 ATCAGTGGTAGCTTCGGCTACATTTCAATGGTAGCTACAGCTACGT
* * * * *
15092771 GTCAGTGGTAGCTTCGGCTACATTTTAGTGGTAGCTACGGCTGCGT
1 ATCAGTGGTAGCTTCGGCTACATTTCAATGGTAGCTACAGCTACGT
*
15092817 ATCAGTGGTAGCTTCTGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
15092840 ATCAGTGTGG
Statistics
Matches: 136, Mismatches: 25, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 136 1.00
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.30
Consensus pattern (46 bp):
ATCAGTGGTAGCTTCGGCTACATTTCAATGGTAGCTACAGCTACGT
Found at i:15101186 original size:19 final size:19
Alignment explanation
Indices: 15101159--15101196 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
15101149 CCATTAATTG
*
15101159 TTTATACTTTTCTATTCTA
1 TTTAAACTTTTCTATTCTA
15101178 TTTAAACTTTTCTATTCTA
1 TTTAAACTTTTCTATTCTA
15101197 ATAAAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.24, C:0.16, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTAAACTTTTCTATTCTA
Found at i:15104926 original size:14 final size:14
Alignment explanation
Indices: 15104899--15104939 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
15104889 AATTCACTAT
15104899 ATCA-AAATACTTAA
1 ATCATAAATA-TTAA
15104913 ATCATAAATATTAA
1 ATCATAAATATTAA
*
15104927 ATAAT-AATATTAA
1 ATCATAAATATTAA
15104940 TGTATTCACT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 8 0.32
14 12 0.48
15 5 0.20
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
ATCATAAATATTAA
Found at i:15105242 original size:19 final size:20
Alignment explanation
Indices: 15105218--15105261 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
15105208 CAACTTATTT
15105218 TAAAAA-ATATTTTTTAAAA
1 TAAAAACATATTTTTTAAAA
*
15105237 TAAAAATCATTTTTTTTAAAA
1 TAAAAA-CATATTTTTTAAAA
15105258 -AAAA
1 TAAAA
15105262 TGCAAAGCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 6 0.27
20 4 0.18
21 12 0.55
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (20 bp):
TAAAAACATATTTTTTAAAA
Found at i:15105262 original size:19 final size:17
Alignment explanation
Indices: 15105219--15105262 Score: 52
Period size: 20 Copynumber: 2.4 Consensus size: 17
15105209 AACTTATTTT
15105219 AAAAAATATTTTTTAAA
1 AAAAAATATTTTTTAAA
*
15105236 ATAAAAATCATTTTTTTTAA
1 A-AAAAAT-A-TTTTTTAAA
15105256 AAAAAAT
1 AAAAAAT
15105263 GCAAAGCTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 1 0.04
18 6 0.26
19 7 0.30
20 9 0.39
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (17 bp):
AAAAAATATTTTTTAAA
Found at i:15113517 original size:17 final size:17
Alignment explanation
Indices: 15113495--15113533 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
15113485 AATTTAGATG
*
15113495 TAAAATATACTA-AAATA
1 TAAAATAAACTAGAAA-A
15113512 TAAAATAAACTAGAAAA
1 TAAAATAAACTAGAAAA
15113529 TAAAA
1 TAAAA
15113534 ATGGAGTCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.69, C:0.05, G:0.03, T:0.23
Consensus pattern (17 bp):
TAAAATAAACTAGAAAA
Found at i:15114775 original size:9 final size:9
Alignment explanation
Indices: 15114746--15114782 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
15114736 TGAGTTTTCG
15114746 AATTCGAAT
1 AATTCGAAT
*
15114755 AACTCGAAT
1 AATTCGAAT
15114764 AATTCGAAT
1 AATTCGAAT
*
15114773 AATTCAAAT
1 AATTCGAAT
15114782 A
1 A
15114783 TCAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:15119116 original size:22 final size:22
Alignment explanation
Indices: 15119091--15119213 Score: 65
Period size: 22 Copynumber: 6.1 Consensus size: 22
15119081 ACAGAGCCCA
15119091 AATATCATCGGCACAAAGCCTG
1 AATATCATCGGCACAAAGCCTG
*
15119113 AATACCA-CTGGCACAAAG-CT-
1 AATATCATC-GGCACAAAGCCTG
* * *
15119133 --T-GC-TAGGCACAAAGCCCG
1 AATATCATCGGCACAAAGCCTG
*
15119151 AATATCACCGGCACAAAG-CT-
1 AATATCATCGGCACAAAGCCTG
* * *
15119171 --T-GC-TAGGCACAAAGCCCG
1 AATATCATCGGCACAAAGCCTG
*
15119189 AATATCACCGGCACAAAGCCTG
1 AATATCATCGGCACAAAGCCTG
15119211 AAT
1 AAT
15119214 TAACGTTACG
Statistics
Matches: 71, Mismatches: 16, Indels: 28
0.62 0.14 0.24
Matches are distributed among these distances:
16 18 0.25
17 4 0.06
18 2 0.03
20 2 0.03
21 6 0.08
22 39 0.55
ACGTcount: A:0.36, C:0.30, G:0.20, T:0.15
Consensus pattern (22 bp):
AATATCATCGGCACAAAGCCTG
Found at i:15119154 original size:38 final size:38
Alignment explanation
Indices: 15119100--15119207 Score: 189
Period size: 38 Copynumber: 2.8 Consensus size: 38
15119090 AAATATCATC
* * *
15119100 GGCACAAAGCCTGAATACCACTGGCACAAAGCTTGCTA
1 GGCACAAAGCCCGAATATCACCGGCACAAAGCTTGCTA
15119138 GGCACAAAGCCCGAATATCACCGGCACAAAGCTTGCTA
1 GGCACAAAGCCCGAATATCACCGGCACAAAGCTTGCTA
15119176 GGCACAAAGCCCGAATATCACCGGCACAAAGC
1 GGCACAAAGCCCGAATATCACCGGCACAAAGC
15119208 CTGAATTAAC
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 67 1.00
ACGTcount: A:0.35, C:0.31, G:0.21, T:0.12
Consensus pattern (38 bp):
GGCACAAAGCCCGAATATCACCGGCACAAAGCTTGCTA
Found at i:15128842 original size:38 final size:38
Alignment explanation
Indices: 15128798--15128934 Score: 123
Period size: 38 Copynumber: 3.4 Consensus size: 38
15128788 ACACTAGCAT
* * * *
15128798 AAAGCCTACTCGGCATAGAGGCCAAATATCACCGGCAC
1 AAAGCCTACTAGGCACAAAGCCCAAATATCACCGGCAC
* * *
15128836 AAAGCCTGCTAGGCACAAATCCCGAATATCACCGGCAC
1 AAAGCCTACTAGGCACAAAGCCCAAATATCACCGGCAC
*
15128874 AAAGCCTAAATATCACTA-GCACAAAGCCCAAATATCACCGACAC
1 AAAGCC------T-ACTAGGCACAAAGCCCAAATATCACCGGCAC
*
15128918 AAAGCCTGCTAGGCACA
1 AAAGCCTACTAGGCACA
15128935 GAGTCTGCAT
Statistics
Matches: 79, Mismatches: 12, Indels: 16
0.74 0.11 0.15
Matches are distributed among these distances:
37 3 0.04
38 43 0.54
44 30 0.38
45 3 0.04
ACGTcount: A:0.38, C:0.32, G:0.17, T:0.13
Consensus pattern (38 bp):
AAAGCCTACTAGGCACAAAGCCCAAATATCACCGGCAC
Found at i:15128875 original size:22 final size:22
Alignment explanation
Indices: 15128847--15128923 Score: 100
Period size: 22 Copynumber: 3.5 Consensus size: 22
15128837 AAGCCTGCTA
* *
15128847 GGCACAAATCCCGAATATCACC
1 GGCACAAAGCCCAAATATCACC
* *
15128869 GGCACAAAGCCTAAATATCACT
1 GGCACAAAGCCCAAATATCACC
*
15128891 AGCACAAAGCCCAAATATCACC
1 GGCACAAAGCCCAAATATCACC
*
15128913 GACACAAAGCC
1 GGCACAAAGCC
15128924 TGCTAGGCAC
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 46 1.00
ACGTcount: A:0.42, C:0.34, G:0.13, T:0.12
Consensus pattern (22 bp):
GGCACAAAGCCCAAATATCACC
Found at i:15129828 original size:23 final size:22
Alignment explanation
Indices: 15129779--15129832 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 22
15129769 TCAAATCATG
*
15129779 AAATTTACCTTTTTAAAATTAC
1 AAATTTACCCTTTTAAAATTAC
*
15129801 GAATTTACCCTTTTAAAATCCTA-
1 AAATTTACCCTTTTAAAAT--TAC
15129824 AAATTTACC
1 AAATTTACC
15129833 ATGCAACCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 17 0.63
23 8 0.30
24 2 0.07
ACGTcount: A:0.39, C:0.19, G:0.02, T:0.41
Consensus pattern (22 bp):
AAATTTACCCTTTTAAAATTAC
Found at i:15130462 original size:12 final size:13
Alignment explanation
Indices: 15130445--15130473 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
15130435 AAGATTTCTT
15130445 TTGAAGCT-AGAA
1 TTGAAGCTGAGAA
15130457 TTGAAGCTGAGAA
1 TTGAAGCTGAGAA
15130470 TTGA
1 TTGA
15130474 GTATGAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.38, C:0.07, G:0.28, T:0.28
Consensus pattern (13 bp):
TTGAAGCTGAGAA
Found at i:15134154 original size:40 final size:40
Alignment explanation
Indices: 15134086--15134162 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
15134076 AATCGAACCG
* * *
15134086 AAATATTTCGGTTAATTCAGCTGATTAACCGAATTAATCA
1 AAATATTTCGATTAATTCAGCAGATTAACCAAATTAATCA
*
15134126 AAATATTTCGATTAATTCGATCAG-TTAACCAAATTAA
1 AAATATTTCGATTAATTC-AGCAGATTAACCAAATTAA
15134163 CCGAGATTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 29 0.91
41 3 0.09
ACGTcount: A:0.40, C:0.14, G:0.10, T:0.35
Consensus pattern (40 bp):
AAATATTTCGATTAATTCAGCAGATTAACCAAATTAATCA
Found at i:15144451 original size:39 final size:40
Alignment explanation
Indices: 15144408--15144493 Score: 122
Period size: 39 Copynumber: 2.2 Consensus size: 40
15144398 AAAAAATATA
*
15144408 TTTAATACAACAAAATATTTATTATATT-T-ATTTATGTTT
1 TTTAATACAACAAAATATTTATTATATTATGATAT-TGTTT
* *
15144447 TTTAATATAATAAAATATTTATTATATTATGATATTGTTT
1 TTTAATACAACAAAATATTTATTATATTATGATATTGTTT
15144487 TTTAATA
1 TTTAATA
15144494 TAAATACTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
39 26 0.62
40 13 0.31
41 3 0.07
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (40 bp):
TTTAATACAACAAAATATTTATTATATTATGATATTGTTT
Found at i:15146156 original size:23 final size:24
Alignment explanation
Indices: 15146111--15146165 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
15146101 AATTTATTCT
* *
15146111 AAAACAAAATAGAATTAGTTTTAA
1 AAAATAAAATAGAATTAGATTTAA
*
15146135 AAAATAAAATATAATT-GATTTAA
1 AAAATAAAATAGAATTAGATTTAA
*
15146158 AAATTAAA
1 AAAATAAA
15146166 TTAATTCTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
23 13 0.48
24 14 0.52
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (24 bp):
AAAATAAAATAGAATTAGATTTAA
Found at i:15146167 original size:17 final size:17
Alignment explanation
Indices: 15146140--15146183 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
15146130 TTTAAAAAAT
*
15146140 AAAATATAATTGATT-TA
1 AAAATA-AATTAATTCTA
15146157 AAAATTAAATTAATTCTA
1 AAAA-TAAATTAATTCTA
15146175 AAAATAAAT
1 AAAATAAAT
15146184 GAATAGGTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 16 0.67
18 8 0.33
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (17 bp):
AAAATAAATTAATTCTA
Found at i:15151706 original size:6 final size:6
Alignment explanation
Indices: 15151695--15151725 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
15151685 AAATGCCAAT
*
15151695 TGGGGC TGGGGC TGGGGC TGGGGC AGGGGC T
1 TGGGGC TGGGGC TGGGGC TGGGGC TGGGGC T
15151726 AAGGTAGGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.03, C:0.16, G:0.65, T:0.16
Consensus pattern (6 bp):
TGGGGC
Found at i:15151846 original size:7 final size:6
Alignment explanation
Indices: 15151792--15151868 Score: 56
Period size: 7 Copynumber: 12.5 Consensus size: 6
15151782 ATTATGATAA
15151792 TTTAA- TTTAA- TTTAA- -TTAAT TTTAAT TTTAAT TTTATATT TTTCGAAT
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTA-A-T TTT--AAT
15151840 TTTGAAT TTTAAAT TTTGAAT TTT-AT TTT
1 TTT-AAT TTT-AAT TTT-AAT TTTAAT TTT
15151869 TTATTAAATT
Statistics
Matches: 64, Mismatches: 2, Indels: 12
0.82 0.03 0.15
Matches are distributed among these distances:
4 4 0.06
5 15 0.23
6 15 0.23
7 20 0.31
8 8 0.12
9 1 0.02
10 1 0.02
ACGTcount: A:0.31, C:0.01, G:0.04, T:0.64
Consensus pattern (6 bp):
TTTAAT
Found at i:15154532 original size:15 final size:13
Alignment explanation
Indices: 15154512--15154549 Score: 51
Period size: 12 Copynumber: 2.8 Consensus size: 13
15154502 TATATGTAGG
15154512 TATAATAATATATAA
1 TATAATAATA-A-AA
15154527 TATAATAATAAAA
1 TATAATAATAAAA
15154540 -ATAATAATAA
1 TATAATAATAA
15154550 CAAAATTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 10 0.43
13 2 0.09
14 1 0.04
15 10 0.43
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (13 bp):
TATAATAATAAAA
Found at i:15154554 original size:15 final size:15
Alignment explanation
Indices: 15154528--15154561 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
15154518 AATATATAAT
*
15154528 ATAATAATAAAAATA
1 ATAATAACAAAAATA
*
15154543 ATAATAACAAAATTA
1 ATAATAACAAAAATA
15154558 ATAA
1 ATAA
15154562 AATAGACTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (15 bp):
ATAATAACAAAAATA
Found at i:15154809 original size:19 final size:21
Alignment explanation
Indices: 15154771--15154809 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
15154761 CCTTTTTTAA
*
15154771 AATCGTAAATAAGTAAAAAAT
1 AATCGTAAATAAGAAAAAAAT
15154792 AATCG-AAA-AAGAAAAAAA
1 AATCGTAAATAAGAAAAAAA
15154810 AAGAAAATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.69, C:0.05, G:0.10, T:0.15
Consensus pattern (21 bp):
AATCGTAAATAAGAAAAAAAT
Found at i:15155016 original size:23 final size:22
Alignment explanation
Indices: 15154984--15155028 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
15154974 AAATTAAATC
*
15154984 TCTAATATTACAAAATCATATCT
1 TCTAAGATTA-AAAATCATATCT
*
15155007 TCTAAGATTAAATATCATATCT
1 TCTAAGATTAAAAATCATATCT
15155029 AAGATTGCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.42, C:0.16, G:0.02, T:0.40
Consensus pattern (22 bp):
TCTAAGATTAAAAATCATATCT
Found at i:15155044 original size:21 final size:21
Alignment explanation
Indices: 15155018--15155080 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
15155008 CTAAGATTAA
15155018 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
*
15155039 ATATCATATCTAGGATTGC--
1 ATATCATATCTAAGATTGCAT
15155058 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
15155079 AT
1 AT
15155081 CCTCGAAGAT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
19 18 0.47
21 20 0.53
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (21 bp):
ATATCATATCTAAGATTGCAT
Found at i:15155075 original size:19 final size:19
Alignment explanation
Indices: 15155007--15155081 Score: 105
Period size: 19 Copynumber: 3.8 Consensus size: 19
15154997 AATCATATCT
**
15155007 TCTAAGATTAAATATCATA
1 TCTAAGATTGCATATCATA
15155026 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
*
15155047 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
15155066 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
15155082 CTCGAAGATT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 32 0.64
21 18 0.36
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:15155570 original size:44 final size:44
Alignment explanation
Indices: 15155463--15155616 Score: 120
Period size: 44 Copynumber: 3.6 Consensus size: 44
15155453 TATTTAGTCT
* * ** *
15155463 GCTCCACTGCAACTTCAGGGAGATAAGAT--TA-GATGTGTTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATCATAGGCTTTAATCC
* * * *
15155504 GCT-CTCTGCAACTTTAGAGAGATAAGATCCA-AGGTTTTAATCC
1 GCTCCACTGCAACTTCAGGGAGATAAGAT-CATAGGCTTTAATCC
* * * * * **
15155547 GTTTCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATTT
1 GCTCCACTGCAACTTCAGGGAGATAAGATCATAGGCTTTAATCC
15155591 GCTCCACTGCAACTTCAGGGAGATAA
1 GCTCCACTGCAACTTCAGGGAGATAA
15155617 AATTTGCCAT
Statistics
Matches: 86, Mismatches: 21, Indels: 9
0.74 0.18 0.08
Matches are distributed among these distances:
40 22 0.26
41 3 0.03
42 1 0.01
43 8 0.09
44 52 0.60
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (44 bp):
GCTCCACTGCAACTTCAGGGAGATAAGATCATAGGCTTTAATCC
Found at i:15155977 original size:44 final size:44
Alignment explanation
Indices: 15155923--15156298 Score: 384
Period size: 44 Copynumber: 8.7 Consensus size: 44
15155913 GCTATTTTCC
* * *
15155923 ACCTACTCCACTGCTGCTCAGGGAGATAGGGTTCACGATCTTCA
1 ACCTATTCCACTGCTGCTCAGGGAGATAGGATTCACAATCTTCA
* *
15155967 ACCTATTCCACTGCTGAC-CAGGGAGATAGGA-CCTACAATCTTAA
1 ACCTATTCCACTGCTG-CTCAGGGAGATAGGATTC-ACAATCTTCA
* * *
15156011 ATCTATTCCACTGCTGC-CTAGGGAGATAGAATTCTCAATCTTCA
1 ACCTATTCCACTGCTGCTC-AGGGAGATAGGATTCACAATCTTCA
* *
15156055 ACCTATTCCACTACTGACT-AGGGAGATAGGATTCACAATCTTTA
1 ACCTATTCCACTGCTG-CTCAGGGAGATAGGATTCACAATCTTCA
*
15156099 ACGTATTCCACTGCTG-TCCAGGGAGATAGGATT--C--T-TT-A
1 ACCTATTCCACTGCTGCT-CAGGGAGATAGGATTCACAATCTTCA
* * * * *
15156137 ATCTATTCCACTACTGCCCAGGGAGATAGAATTCTCAATCTTCA
1 ACCTATTCCACTGCTGCTCAGGGAGATAGGATTCACAATCTTCA
* * *
15156181 ACCCATTTCACTGCTGAC-CAGGGAGATAGGATTCACAATCTTTA
1 ACCTATTCCACTGCTG-CTCAGGGAGATAGGATTCACAATCTTCA
* * *
15156225 ACCTATTCCACTGTTG-TCCAAGGAGATAGGATTCACAATCTTTA
1 ACCTATTCCACTGCTGCT-CAGGGAGATAGGATTCACAATCTTCA
15156269 ACCTATTCCACTGCTGACT-AGGGAGATAGG
1 ACCTATTCCACTGCTG-CTCAGGGAGATAGG
15156299 GCTGGGGTCA
Statistics
Matches: 277, Mismatches: 35, Indels: 40
0.79 0.10 0.11
Matches are distributed among these distances:
38 28 0.10
39 2 0.01
40 2 0.01
42 3 0.01
43 5 0.02
44 232 0.84
45 4 0.01
46 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (44 bp):
ACCTATTCCACTGCTGCTCAGGGAGATAGGATTCACAATCTTCA
Found at i:15156160 original size:170 final size:170
Alignment explanation
Indices: 15155969--15156298 Score: 457
Period size: 170 Copynumber: 1.9 Consensus size: 170
15155959 GATCTTCAAC
* * * *
15155969 CTATTCCACTGCTGACCAGGGAGATAGGA-CCTACAATCTTAAATCTATTCCACTGCTG-CCTAG
1 CTATTCCACTACTGACCAGGGAGATAGAATCCT-CAATCTTAAACCCATTCCACTGCTGACC-AG
* * *
15156032 GGAGATAGAATTCTCAATCTTCAACCTATTCCACTACTGACTAGGGAGATAGGATTCACAATCTT
64 GGAGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGATAGGATTCACAATCTT
* *
15156097 TAACGTATTCCACTGCTGTCCAGGGAGATAGGATTCTTTAAT
129 TAACCTATTCCACTGCTGACCAGGGAGATAGGATTCTTTAAT
* * * *
15156139 CTATTCCACTACTGCCCAGGGAGATAGAATTCTCAATCTTCAACCCATTTCACTGCTGACCAGGG
1 CTATTCCACTACTGACCAGGGAGATAGAATCCTCAATCTTAAACCCATTCCACTGCTGACCAGGG
* * ** *
15156204 AGATAGGATTCACAATCTTTAACCTATTCCACTGTTGTCCAAGGAGATAGGATTCACAATCTTTA
66 AGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGATAGGATTCACAATCTTTA
*
15156269 ACCTATTCCACTGCTGACTAGGGAGATAGG
131 ACCTATTCCACTGCTGACCAGGGAGATAGG
15156299 GCTGGGGTCA
Statistics
Matches: 139, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
170 135 0.97
171 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (170 bp):
CTATTCCACTACTGACCAGGGAGATAGAATCCTCAATCTTAAACCCATTCCACTGCTGACCAGGG
AGATAGAATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGATAGGATTCACAATCTTTA
ACCTATTCCACTGCTGACCAGGGAGATAGGATTCTTTAAT
Found at i:15156198 original size:126 final size:126
Alignment explanation
Indices: 15155929--15156258 Score: 464
Period size: 126 Copynumber: 2.6 Consensus size: 126
15155919 TTCCACCTAC
* * * *
15155929 TCCACTGCTG-CTCAGGGAGATAGGGTTCACGATCTTCAACCTATTCCACTGCTGACCAGGGAGA
1 TCCACTGCTGACT-AGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAGGGAGA
* *
15155993 TAGGACCTACAATCTTAAATCTATTCCACTGCTGCCTAGGGAGATAGAATTCTCAATCTTCAACC
65 TAGGA--T----TCTTAAATCTATTCCACTACTGCCCAGGGAGATAGAATTCTCAATCTTCAACC
*
15156058 TAT
124 CAT
* *
15156061 TCCACTACTGACTAGGGAGATAGGATTCACAATCTTTAACGTATTCCACTGCTGTCCAGGGAGAT
1 TCCACTGCTGACTAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAGGGAGAT
*
15156126 AGGATTCTTTAATCTATTCCACTACTGCCCAGGGAGATAGAATTCTCAATCTTCAACCCAT
66 AGGATTCTTAAATCTATTCCACTACTGCCCAGGGAGATAGAATTCTCAATCTTCAACCCAT
* * * *
15156187 TTCACTGCTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGTTGTCCAAGGAGAT
1 TCCACTGCTGACTAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAGGGAGAT
15156252 AGGATTC
66 AGGATTC
15156259 ACAATCTTTA
Statistics
Matches: 181, Mismatches: 16, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
126 118 0.65
130 1 0.01
132 60 0.33
133 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (126 bp):
TCCACTGCTGACTAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGTCCAGGGAGAT
AGGATTCTTAAATCTATTCCACTACTGCCCAGGGAGATAGAATTCTCAATCTTCAACCCAT
Found at i:15156358 original size:88 final size:88
Alignment explanation
Indices: 15156288--15156699 Score: 563
Period size: 88 Copynumber: 4.7 Consensus size: 88
15156278 ACTGCTGACT
* * * * * * *
15156288 AGGGAGATAGGGCTGGGGTCATCAATCTGCTTTGCTGTCGGTGCAGGAAGGCAATATCTGCTATT
1 AGGGAGACAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATT
*
15156353 TTTAACCTGCTCCGCTGCAACCT
66 TTTAACCTGCTCCGCTGCAACCC
* * * *
15156376 AGGGAGACAAGGCTGGTGTCTTCGATCTACTTCGCTGTCGGTGTAAGAAAGCAAGATCTGCTATT
1 AGGGAGACAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATT
* * *
15156441 TTCAGCCTGCTCCGCTGTAACCC
66 TTTAACCTGCTCCGCTGCAACCC
* * * *
15156464 AGGGAGGCAAGGCTGGTGTCTTTGATCTGCTTCGCAGTCGGTGCAGGAAGGCAAGATCTGTTATT
1 AGGGAGACAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATT
*
15156529 TTTAGCCTGCTCCGCTGCAACCC
66 TTTAACCTGCTCCGCTGCAACCC
* * *
15156552 AGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGTAGGAAGGTAAGATCTGCTATT
1 AGGGAGACAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATT
*
15156617 TTTAGCCTGCTCCGCTGCAACCC
66 TTTAACCTGCTCCGCTGCAACCC
* * * * *
15156640 AGGGAGGCAAGGCTGGTGACTTCGATCTGCTTCGCTGCCAGTACAGGAAGGCAAGATCTG
1 AGGGAGACAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTG
15156700 TTATCTTCTC
Statistics
Matches: 288, Mismatches: 36, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 288 1.00
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.27
Consensus pattern (88 bp):
AGGGAGACAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATT
TTTAACCTGCTCCGCTGCAACCC
Found at i:15156516 original size:44 final size:44
Alignment explanation
Indices: 15156463--15156602 Score: 113
Period size: 44 Copynumber: 3.2 Consensus size: 44
15156453 CGCTGTAACC
* *
15156463 CAGGGAGGCAAGGCTGGTGTCTTTGATCTGCTTCGCAGTCGGTG
1 CAGGAAGGCAAGGCTGGTGTCTTTGATCTGCTTCGCTGTCGGTG
* * * * * * ****
15156507 CAGGAAGGCAAGATCTGTTAT-TTTTAGCCTGCTCCGCTG-CAACC
1 CAGGAAGGCAAG-GCTGGTGTCTTTGA-TCTGCTTCGCTGTCGGTG
* *
15156551 CAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTG
1 CAGGAAGGCAAGGCTGGTGTCTTTGATCTGCTTCGCTGTCGGTG
*
15156595 TAGGAAGG
1 CAGGAAGG
15156603 TAAGATCTGC
Statistics
Matches: 66, Mismatches: 26, Indels: 8
0.66 0.26 0.08
Matches are distributed among these distances:
43 15 0.23
44 37 0.56
45 14 0.21
ACGTcount: A:0.17, C:0.22, G:0.34, T:0.26
Consensus pattern (44 bp):
CAGGAAGGCAAGGCTGGTGTCTTTGATCTGCTTCGCTGTCGGTG
Found at i:15156541 original size:176 final size:176
Alignment explanation
Indices: 15156312--15156703 Score: 622
Period size: 176 Copynumber: 2.2 Consensus size: 176
15156302 GGGGTCATCA
* * * *
15156312 ATCTGCTTTGCTGTCGGTGCAGGAAGGCAATATCTGCTATTTTTAACCTGCTCCGCTGCAACCTA
1 ATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGTTATTTTTAACCTGCTCCGCTGCAACCCA
15156377 GGGAGACAAGGCTGGTGTCTTCGATCTACTTCGCTGTCGGTGTAAGAAAGCAAGATCTGCTATTT
66 GGGAGACAAGGCTGGTGTCTTCGATCTACTTCGCTGTCGGTGTAAGAAAGCAAGATCTGCTATTT
* * *
15156442 TCAGCCTGCTCCGCTGTAACCCAGGGAGGCAAGGCTGGTGTCTTTG
131 TCAGCCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGACTTCG
* *
15156488 ATCTGCTTCGCAGTCGGTGCAGGAAGGCAAGATCTGTTATTTTTAGCCTGCTCCGCTGCAACCCA
1 ATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGTTATTTTTAACCTGCTCCGCTGCAACCCA
* * * * *
15156553 GGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGTAGGAAGGTAAGATCTGCTATTT
66 GGGAGACAAGGCTGGTGTCTTCGATCTACTTCGCTGTCGGTGTAAGAAAGCAAGATCTGCTATTT
*
15156618 TTAGCCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGACTTCG
131 TCAGCCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGACTTCG
* * *
15156664 ATCTGCTTCGCTGCCAGTACAGGAAGGCAAGATCTGTTAT
1 ATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGTTAT
15156704 CTTCTCTGAT
Statistics
Matches: 197, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
176 197 1.00
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.28
Consensus pattern (176 bp):
ATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGTTATTTTTAACCTGCTCCGCTGCAACCCA
GGGAGACAAGGCTGGTGTCTTCGATCTACTTCGCTGTCGGTGTAAGAAAGCAAGATCTGCTATTT
TCAGCCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGACTTCG
Found at i:15158945 original size:25 final size:25
Alignment explanation
Indices: 15158893--15158945 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
15158883 AAGAAAATTC
*
15158893 AAAAGAATGAAAGAATAATTATTCA
1 AAAAGAATGAAAGAATAATTACTCA
15158918 AAAAGAATGAAA-AAT-ATTAGCTCA
1 AAAAGAATGAAAGAATAATTA-CTCA
15158942 AAAA
1 AAAA
15158946 TAAATGCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 4 0.15
24 10 0.38
25 12 0.46
ACGTcount: A:0.62, C:0.06, G:0.11, T:0.21
Consensus pattern (25 bp):
AAAAGAATGAAAGAATAATTACTCA
Found at i:15158951 original size:25 final size:23
Alignment explanation
Indices: 15158893--15158960 Score: 55
Period size: 25 Copynumber: 2.7 Consensus size: 23
15158883 AAGAAAATTC
* *
15158893 AAAAGAATGAAAGAATAATTATTCA
1 AAAAAAATGAAA-AAT-ATTACTCA
*
15158918 AAAAGAATGAAAAATATTAGCTCA
1 AAAAAAATGAAAAATATTA-CTCA
*
15158942 AAAATAAATGCAAAGATAT
1 AAAA-AAATG-AAAAATAT
15158961 ATTTTATTAG
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
23 4 0.11
24 10 0.27
25 16 0.43
26 7 0.19
ACGTcount: A:0.60, C:0.06, G:0.12, T:0.22
Consensus pattern (23 bp):
AAAAAAATGAAAAATATTACTCA
Found at i:15162945 original size:51 final size:51
Alignment explanation
Indices: 15162848--15162963 Score: 121
Period size: 51 Copynumber: 2.3 Consensus size: 51
15162838 TTATAAAACT
** *
15162848 TATATATATATAAAATACATAATGCATTTATGAAAACAAGGAAAATATA-AA
1 TATATA-ATATAAAATACATAATGCATTTACAAAAAAAAGGAAAATATATAA
* * *
15162899 TATATACATATAAAATATATTCATGCATTTACAAAAAAAATG-AAATATATAA
1 TATATA-ATATAAAATACA-TAATGCATTTACAAAAAAAAGGAAAATATATAA
*
15162951 -GTATAATATAAAA
1 TATATAATATAAAA
15162964 ACGTGGAAAA
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
50 8 0.15
51 28 0.51
52 19 0.35
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (51 bp):
TATATAATATAAAATACATAATGCATTTACAAAAAAAAGGAAAATATATAA
Found at i:15163229 original size:3 final size:3
Alignment explanation
Indices: 15163221--15163260 Score: 55
Period size: 3 Copynumber: 13.3 Consensus size: 3
15163211 ATATGTAGGT
*
15163221 ATA ATA ATA ATA TATA AT- ATA ATA ATA AAA ATA ATA ATA A
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA A
15163261 CAAAATTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 28 0.85
4 3 0.09
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:15163244 original size:15 final size:12
Alignment explanation
Indices: 15163223--15163274 Score: 52
Period size: 12 Copynumber: 4.1 Consensus size: 12
15163213 ATGTAGGTAT
15163223 AATAATAATATATA
1 AATAATAATA-A-A
15163237 ATATAATAATAAA
1 A-ATAATAATAAA
15163250 AATAATAATAACA
1 AATAATAATAA-A
*
15163263 AA-ATTAATAAA
1 AATAATAATAAA
15163274 A
1 A
15163275 TAGACTAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
11 2 0.06
12 17 0.49
13 5 0.14
14 2 0.06
15 9 0.26
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (12 bp):
AATAATAATAAA
Found at i:15163520 original size:19 final size:21
Alignment explanation
Indices: 15163482--15163520 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
15163472 CCTTTTTTAA
*
15163482 AATCGTAAATAAGTAAAAAAT
1 AATCGTAAATAAGAAAAAAAT
15163503 AATCG-AAA-AAGAAAAAAA
1 AATCGTAAATAAGAAAAAAA
15163521 GAAAACAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.69, C:0.05, G:0.10, T:0.15
Consensus pattern (21 bp):
AATCGTAAATAAGAAAAAAAT
Found at i:15164985 original size:20 final size:20
Alignment explanation
Indices: 15164951--15164996 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
15164941 TTTATATTCT
15164951 TTAAAAAATTATAAA-AAAA
1 TTAAAAAATTATAAAGAAAA
* *
15164970 TTAAAGAATATATAAAGAAAG
1 TTAAAAAAT-TATAAAGAAAA
15164991 TTAAAA
1 TTAAAA
15164997 TTTTAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 8 0.36
20 6 0.27
21 8 0.36
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (20 bp):
TTAAAAAATTATAAAGAAAA
Found at i:15166462 original size:24 final size:24
Alignment explanation
Indices: 15166435--15166486 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
15166425 TTAGTAAGTC
*
15166435 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
15166459 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
15166483 AAAT
1 AAAT
15166487 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:15168432 original size:24 final size:24
Alignment explanation
Indices: 15168405--15168456 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
15168395 TTAGTAAGTC
*
15168405 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
15168429 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
15168453 AAAT
1 AAAT
15168457 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:15188800 original size:7 final size:7
Alignment explanation
Indices: 15188790--15189048 Score: 69
Period size: 7 Copynumber: 36.6 Consensus size: 7
15188780 ATAGTTTTGA
15188790 GTTTAGG
1 GTTTAGG
*
15188797 GTTTATG
1 GTTTAGG
**
15188804 GTTTATA
1 GTTTAGG
15188811 GTTT-GTG
1 GTTTAG-G
15188818 GTTT-GTG
1 GTTTAG-G
*
15188825 GTTTAGT
1 GTTTAGG
*
15188832 GTTTAGT
1 GTTTAGG
15188839 GTTTAGG
1 GTTTAGG
15188846 AG-TTAGG
1 -GTTTAGG
*
15188853 AGCTTAGG
1 -GTTTAGG
*
15188861 GTTTAGT
1 GTTTAGG
**
15188868 GTTTACA
1 GTTTAGG
*
15188875 ATTTAGG
1 GTTTAGG
*
15188882 GTGTA-G
1 GTTTAGG
*
15188888 GTTTATG
1 GTTTAGG
**
15188895 GTTTAAA
1 GTTTAGG
* *
15188902 TTTTAAG
1 GTTTAGG
*
15188909 GTTTATG
1 GTTTAGG
* **
15188916 ATTTAAT
1 GTTTAGG
* * *
15188923 ATTAAGA
1 GTTTAGG
*
15188930 GTTTAGT
1 GTTTAGG
*
15188937 GTTTACG
1 GTTTAGG
15188944 GTTTAGG
1 GTTTAGG
*
15188951 GTGTA-G
1 GTTTAGG
*
15188957 GTTTATG
1 GTTTAGG
15188964 GTTTAGTG
1 GTTTAG-G
*
15188972 TTTTAGG
1 GTTTAGG
*
15188979 GTTTAAGA
1 GTTT-AGG
* *
15188987 GCTTAGA
1 GTTTAGG
15188994 GTTTAGGG
1 GTTTA-GG
*
15189002 GTTAAGG
1 GTTTAGG
* *
15189009 GCTTAAG
1 GTTTAGG
*
15189016 GTCTAGGG
1 GTTTA-GG
*
15189024 GTTAAGG
1 GTTTAGG
* *
15189031 GCTTATG
1 GTTTAGG
15189038 GTTTAGG
1 GTTTAGG
15189045 GTTT
1 GTTT
15189049 TAATTTAATA
Statistics
Matches: 185, Mismatches: 57, Indels: 20
0.71 0.22 0.08
Matches are distributed among these distances:
6 10 0.05
7 148 0.80
8 27 0.15
ACGTcount: A:0.20, C:0.03, G:0.32, T:0.45
Consensus pattern (7 bp):
GTTTAGG
Found at i:15188998 original size:22 final size:22
Alignment explanation
Indices: 15188973--15189045 Score: 87
Period size: 22 Copynumber: 3.3 Consensus size: 22
15188963 GGTTTAGTGT
* *
15188973 TTTAGGGTTTAAGAGCTTAGAG
1 TTTAGGGGTTAAGGGCTTAGAG
15188995 TTTAGGGGTTAAGGGCTTA-AGG
1 TTTAGGGGTTAAGGGCTTAGA-G
*
15189017 TCTAGGGGTTAAGGGCTTATG-G
1 TTTAGGGGTTAAGGGCTTA-GAG
15189039 TTTAGGG
1 TTTAGGG
15189046 TTTTAATTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
21 1 0.02
22 43 0.98
ACGTcount: A:0.22, C:0.05, G:0.38, T:0.34
Consensus pattern (22 bp):
TTTAGGGGTTAAGGGCTTAGAG
Found at i:15189371 original size:115 final size:116
Alignment explanation
Indices: 15189229--15189593 Score: 473
Period size: 116 Copynumber: 3.2 Consensus size: 116
15189219 AACGATGCCA
* * * * *
15189229 TTTTATCTGCGTTTTTAGTGGCATTTTTACTAAAACGCTGCAAAAGGATATCTATTAGTGGCGGT
1 TTTTATCTGCGTTTTTAGTGGCATTTTTACTAAAATGCCGCAAAAGGATATGTGTTAGTGGCGTT
* * * * *
15189294 TGTACGAAAAACGCTGTAATTAGGTTTTAAGTGTTTGCTAGACGTTGTCG-
66 TTTACGAAAAACGCCGCAATTATGTTTTAAGTGTTTGCTAAACGTTGTCGT
** * **
15189344 TTTTATCTGCGTTTTTAGTGGTGTTTTTACTAAAATGCCACAAGGGGATATGTGTTAGTGGCGTT
1 TTTTATCTGCGTTTTTAGTGGCATTTTTACTAAAATGCCGCAAAAGGATATGTGTTAGTGGCGTT
* *
15189409 TTTAC-AGAAAATGCCGCAATTATGTTTTAAGTGTTTGCTAAACGTTTTCGT
66 TTTACGA-AAAACGCCGCAATTATGTTTTAAGTGTTTGCTAAACGTTGTCGT
* * * * *
15189460 TTTTATTTGCCTTTCTAGTGGCATTTTGACTAAAATGCCGCAAAAGGATATGTGTTAGTGGTGTT
1 TTTTATCTGCGTTTTTAGTGGCATTTTTACTAAAATGCCGCAAAAGGATATGTGTTAGTGGCGTT
* *
15189525 TTTACGAAAAACTCCGCAATTATGTTTTAAGTGTTTGCTAAACGTTGTTGT
66 TTTACGAAAAACGCCGCAATTATGTTTTAAGTGTTTGCTAAACGTTGTCGT
* *
15189576 TTTTATTTGCGATTTTAG
1 TTTTATCTGCGTTTTTAG
15189594 CTGCGTTAGT
Statistics
Matches: 213, Mismatches: 34, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
114 1 0.00
115 96 0.45
116 115 0.54
117 1 0.00
ACGTcount: A:0.24, C:0.12, G:0.22, T:0.42
Consensus pattern (116 bp):
TTTTATCTGCGTTTTTAGTGGCATTTTTACTAAAATGCCGCAAAAGGATATGTGTTAGTGGCGTT
TTTACGAAAAACGCCGCAATTATGTTTTAAGTGTTTGCTAAACGTTGTCGT
Found at i:15189723 original size:23 final size:23
Alignment explanation
Indices: 15189697--15189818 Score: 124
Period size: 23 Copynumber: 5.3 Consensus size: 23
15189687 CCCCACTCAG
*
15189697 ATTTCCCCAATTTCATTTCCCTA
1 ATTTCCCCAATTTCATTTCCCCA
*
15189720 ATTT-CCC-ATTTCCTATTCCCCCA
1 ATTTCCCCAATTT-C-ATTTCCCCA
* * *
15189743 ATTTCTCCGATTTCATTTCCCAA
1 ATTTCCCCAATTTCATTTCCCCA
* *
15189766 ATTT-CCCAATTCCTTTTCCCCCA
1 ATTTCCCCAATTTCATTT-CCCCA
*
15189789 ATTTCCCCGATTTCATTTCCCCA
1 ATTTCCCCAATTTCATTTCCCCA
15189812 ATTTCCC
1 ATTTCCC
15189819 AAGACCTGTC
Statistics
Matches: 80, Mismatches: 13, Indels: 12
0.76 0.12 0.11
Matches are distributed among these distances:
21 4 0.05
22 13 0.16
23 46 0.57
24 13 0.16
25 4 0.05
ACGTcount: A:0.19, C:0.39, G:0.02, T:0.41
Consensus pattern (23 bp):
ATTTCCCCAATTTCATTTCCCCA
Found at i:15189756 original size:46 final size:46
Alignment explanation
Indices: 15189697--15189820 Score: 194
Period size: 46 Copynumber: 2.7 Consensus size: 46
15189687 CCCCACTCAG
* * *
15189697 ATTTCCCCAATTTCATTTCCCTAATTTCCCATTTCCTATTCCCCCA
1 ATTTCCCCGATTTCATTTCCCAAATTTCCCAATTCCTATTCCCCCA
* *
15189743 ATTTCTCCGATTTCATTTCCCAAATTTCCCAATTCCTTTTCCCCCA
1 ATTTCCCCGATTTCATTTCCCAAATTTCCCAATTCCTATTCCCCCA
*
15189789 ATTTCCCCGATTTCATTTCCCCAATTTCCCAA
1 ATTTCCCCGATTTCATTTCCCAAATTTCCCAA
15189821 GACCTGTCCA
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.20, C:0.38, G:0.02, T:0.40
Consensus pattern (46 bp):
ATTTCCCCGATTTCATTTCCCAAATTTCCCAATTCCTATTCCCCCA
Found at i:15189989 original size:13 final size:12
Alignment explanation
Indices: 15189956--15189989 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
15189946 GGTCAGATTC
*
15189956 TTTTGTTGGCAT
1 TTTTGTTGTCAT
15189968 TTTTGTTGTCAT
1 TTTTGTTGTCAT
15189980 TTTTGCTTGT
1 TTTTG-TTGT
15189990 TCCGTTTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 16 0.80
13 4 0.20
ACGTcount: A:0.06, C:0.09, G:0.21, T:0.65
Consensus pattern (12 bp):
TTTTGTTGTCAT
Found at i:15190957 original size:46 final size:45
Alignment explanation
Indices: 15190888--15190975 Score: 115
Period size: 46 Copynumber: 1.9 Consensus size: 45
15190878 TTACTTTTTT
* *
15190888 AAAAATCTTTAATTTCCATTATTTA-TTAGTCACTTAATTTCTAAA
1 AAAAATCTTTAATTTCCACTATTTACATA-TCACTTAATTTCTAAA
* *
15190933 AAAAATCTTTTAATTTTCACTATTTACATATTACTTAATTTCT
1 AAAAATC-TTTAATTTCCACTATTTACATATCACTTAATTTCT
15190976 TGGAATTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
45 7 0.19
46 28 0.76
47 2 0.05
ACGTcount: A:0.36, C:0.14, G:0.01, T:0.49
Consensus pattern (45 bp):
AAAAATCTTTAATTTCCACTATTTACATATCACTTAATTTCTAAA
Found at i:15191196 original size:20 final size:21
Alignment explanation
Indices: 15191152--15191204 Score: 72
Period size: 20 Copynumber: 2.5 Consensus size: 21
15191142 TTATTTATTT
15191152 TATATTTTTAAATATTAAAACC
1 TATATTTTT-AATATTAAAACC
**
15191174 TATATTTTTAATA-TATCACC
1 TATATTTTTAATATTAAAACC
15191194 TATATTTTTAA
1 TATATTTTTAA
15191205 ATTCATTACT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 16 0.55
21 4 0.14
22 9 0.31
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (21 bp):
TATATTTTTAATATTAAAACC
Found at i:15191305 original size:37 final size:34
Alignment explanation
Indices: 15191221--15191311 Score: 119
Period size: 34 Copynumber: 2.6 Consensus size: 34
15191211 TACTAATAAC
* * *
15191221 TTTTTAAATTTTAAACATAATTATTTATTTTATG
1 TTTTTAAATATTATACATAATTATTTATTTTATA
*
15191255 TTTTTAAATATTATATATAATTATTTATTTTTAAATA
1 TTTTTAAATATTATACATAATTATTTA-TTTT--ATA
15191292 TTTTTAAATATTATACATAA
1 TTTTTAAATATTATACATAA
15191312 AATTTTAAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
34 24 0.49
35 4 0.08
37 21 0.43
ACGTcount: A:0.40, C:0.02, G:0.01, T:0.57
Consensus pattern (34 bp):
TTTTTAAATATTATACATAATTATTTATTTTATA
Found at i:15191432 original size:9 final size:9
Alignment explanation
Indices: 15191418--15191450 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
15191408 ACTAATTTCC
15191418 ACATAACAT
1 ACATAACAT
15191427 ACATAAC-T
1 ACATAACAT
15191435 CACATAACAT
1 -ACATAACAT
15191445 ACATAA
1 ACATAA
15191451 TAACTTATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 1 0.05
9 20 0.91
10 1 0.05
ACGTcount: A:0.55, C:0.24, G:0.00, T:0.21
Consensus pattern (9 bp):
ACATAACAT
Found at i:15191490 original size:9 final size:9
Alignment explanation
Indices: 15191473--15191678 Score: 118
Period size: 9 Copynumber: 22.2 Consensus size: 9
15191463 ATCATAACTC
15191473 AACTTACAT
1 AACTTACAT
*
15191482 AACTCACAT
1 AACTTACAT
15191491 AACTTACAT
1 AACTTACAT
*
15191500 AACTTATAT
1 AACTTACAT
*
15191509 ATACCATA-ACT
1 A-A-CTTACA-T
15191520 CAACTTACAT
1 -AACTTACAT
*
15191530 AACTCACAT
1 AACTTACAT
*
15191539 AACTTATAT
1 AACTTACAT
*
15191548 ATATCATA-ACT
1 A-A-CTTACA-T
15191559 CAACTTACAT
1 -AACTTACAT
15191569 AACTTACAT
1 AACTTACAT
15191578 AA--TACAT
1 AACTTACAT
* *
15191585 AA-ATATAT
1 AACTTACAT
* *
15191593 ATCATATCAT
1 AACTTA-CAT
*
15191603 AGCTTACAT
1 AACTTACAT
*
15191612 AACTCACAT
1 AACTTACAT
15191621 AACTTACAT
1 AACTTACAT
15191630 AACTTA-AT
1 AACTTACAT
*
15191638 AACTTATGTAT
1 AACTTA--CAT
* *
15191649 ATCATATCAT
1 AACTTA-CAT
15191659 AACTTACAT
1 AACTTACAT
*
15191668 AACTTGCAT
1 AACTTACAT
15191677 AA
1 AA
15191679 TACATAAATA
Statistics
Matches: 156, Mismatches: 25, Indels: 32
0.73 0.12 0.15
Matches are distributed among these distances:
7 7 0.04
8 13 0.08
9 92 0.59
10 24 0.15
11 18 0.12
12 2 0.01
ACGTcount: A:0.44, C:0.21, G:0.01, T:0.33
Consensus pattern (9 bp):
AACTTACAT
Done.