Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 54 of 221
Found at i:15523466 original size:58 final size:58
Alignment explanation
Indices: 15523399--15523516 Score: 236
Period size: 58 Copynumber: 2.0 Consensus size: 58
15523389 GTTAATTAAT
15523399 GCATTTAGTGACTAAATGGCTTAATTATTAATTGAGAAAGGAGCTATATGGTCATTAG
1 GCATTTAGTGACTAAATGGCTTAATTATTAATTGAGAAAGGAGCTATATGGTCATTAG
15523457 GCATTTAGTGACTAAATGGCTTAATTATTAATTGAGAAAGGAGCTATATGGTCATTAG
1 GCATTTAGTGACTAAATGGCTTAATTATTAATTGAGAAAGGAGCTATATGGTCATTAG
15523515 GC
1 GC
15523517 CTTAATTAAT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 60 1.00
ACGTcount: A:0.34, C:0.09, G:0.23, T:0.34
Consensus pattern (58 bp):
GCATTTAGTGACTAAATGGCTTAATTATTAATTGAGAAAGGAGCTATATGGTCATTAG
Found at i:15524598 original size:35 final size:35
Alignment explanation
Indices: 15524546--15524708 Score: 166
Period size: 35 Copynumber: 4.6 Consensus size: 35
15524536 TACTCTCTAT
**
15524546 TTGGCGTGTTTCAGTTGGACTAGCTCGTATGAGCA
1 TTGGCGTGTTTTGGTTGGACTAGCTCGTATGAGCA
* *
15524581 TTGGCGTGTTTTGGTTGGACTAGTTCTTATGAGCA
1 TTGGCGTGTTTTGGTTGGACTAGCTCGTATGAGCA
* ** *
15524616 TTGGCATGTTCCGGTTGGACTAGCTCTTATGAGCA
1 TTGGCGTGTTTTGGTTGGACTAGCTCGTATGAGCA
* ** *
15524651 TTTGGTGTGTTTTGGAGGGA-TTGACTCGTATGAGCA
1 -TTGGCGTGTTTTGGTTGGACTAG-CTCGTATGAGCA
* *
15524687 TCTGGCGTGTTATGGCTGGACT
1 T-TGGCGTGTTTTGGTTGGACT
15524709 GACGATGTTC
Statistics
Matches: 104, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
35 65 0.62
36 38 0.37
37 1 0.01
ACGTcount: A:0.15, C:0.15, G:0.33, T:0.37
Consensus pattern (35 bp):
TTGGCGTGTTTTGGTTGGACTAGCTCGTATGAGCA
Found at i:15529100 original size:18 final size:18
Alignment explanation
Indices: 15529067--15529106 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
15529057 TTTTTATTTG
*
15529067 TTATTATTTTTCTACCTT
1 TTATTATTTTTCTACCCT
15529085 TTATTA-TTTTCTTACCCT
1 TTATTATTTTTC-TACCCT
15529103 TTAT
1 TTAT
15529107 AAACCCCTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.65
Consensus pattern (18 bp):
TTATTATTTTTCTACCCT
Found at i:15538508 original size:67 final size:66
Alignment explanation
Indices: 15538401--15538527 Score: 200
Period size: 67 Copynumber: 1.9 Consensus size: 66
15538391 CATTTCAGAT
*
15538401 AGCACACTCCTGCGAACCTCATCCTTACAGCAGGATTACCAGTCCAGGCTAAATCCCCTGCAAGA
1 AGCACACTCCCGCGAACCTCATCCTTACAGCAGGATTACCAGTCCAGGCTAAATCCCCTGCAAGA
15538466 G
66 G
* * * *
15538467 AGCACATTCCCGCGAACCTTATTCCTTATAGTAGGATTACCAGTCCAGGCTAAATCCCCTG
1 AGCACACTCCCGCGAACCTCA-TCCTTACAGCAGGATTACCAGTCCAGGCTAAATCCCCTG
15538528 TAATATAAAC
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
66 18 0.33
67 37 0.67
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.22
Consensus pattern (66 bp):
AGCACACTCCCGCGAACCTCATCCTTACAGCAGGATTACCAGTCCAGGCTAAATCCCCTGCAAGA
G
Found at i:15538747 original size:57 final size:56
Alignment explanation
Indices: 15538654--15538761 Score: 171
Period size: 57 Copynumber: 1.9 Consensus size: 56
15538644 AATTCGGATT
*
15538654 ACCCGTCCGGGCTAAATCCATTTCCACATATTCTTCGGGAGGGCTATATCAAGATC
1 ACCCGTCAGGGCTAAATCCATTTCCACATATTCTTCGGGAGGGCTATATCAAGATC
* **
15538710 ACCCGTCAGGGCTAGATCTTTTTCACACATATTCTTCGGGAGGGCTATATCA
1 ACCCGTCAGGGCTAAATCCATTTC-CACATATTCTTCGGGAGGGCTATATCA
15538762 GGATAGGATC
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
56 20 0.43
57 27 0.57
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (56 bp):
ACCCGTCAGGGCTAAATCCATTTCCACATATTCTTCGGGAGGGCTATATCAAGATC
Found at i:15543094 original size:171 final size:171
Alignment explanation
Indices: 15542804--15543134 Score: 518
Period size: 171 Copynumber: 1.9 Consensus size: 171
15542794 GACATGGTCG
* *
15542804 TGTGTCATTTGTGAGTTTCTTAGTGTACAAGTCAGAGAGTTACACAGCCTAGCACATGGCCTGGC
1 TGTGTCATTTGTGAGTTTCTTAGTATACAAGTCAGAGAGTTACACAGCCTAGCACATGGCCCGGC
* * * ** *
15542869 ATACGGGGGTGTAGGGCTACTCAGTGAGTTACACGAGTGTGGACATAAGCTGGGACACGGTCGTA
66 ACACGGGCGTGTAGGGCTACTCAGTAAGTTACACGAGTGACGACACAAGCTGGGACACGGTCGTA
*
15542934 TGTCCCTTGTTTGAAAGTTACACGGCCTGGCGACACAGCCA
131 TGTCCCTTGTTCGAAAGTTACACGGCCTGGCGACACAGCCA
* *
15542975 TGTGTCATTTGTGAGTTTCTTAGTATACAAGTCAGAGAGTTACACAGCTTAGCATATGGCCCGGC
1 TGTGTCATTTGTGAGTTTCTTAGTATACAAGTCAGAGAGTTACACAGCCTAGCACATGGCCCGGC
* * *
15543040 ACACGGGCGTGTGGGGCTACTCAGTAAGTTACACGAGTGACGACACAGGCTGGGACACGGTCGTG
66 ACACGGGCGTGTAGGGCTACTCAGTAAGTTACACGAGTGACGACACAAGCTGGGACACGGTCGTA
* *
15543105 TGTCCCTTGTTCGAAAGTTATATGGCCTGG
131 TGTCCCTTGTTCGAAAGTTACACGGCCTGG
15543135 GGTGATTTCA
Statistics
Matches: 144, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
171 144 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (171 bp):
TGTGTCATTTGTGAGTTTCTTAGTATACAAGTCAGAGAGTTACACAGCCTAGCACATGGCCCGGC
ACACGGGCGTGTAGGGCTACTCAGTAAGTTACACGAGTGACGACACAAGCTGGGACACGGTCGTA
TGTCCCTTGTTCGAAAGTTACACGGCCTGGCGACACAGCCA
Found at i:15549323 original size:21 final size:22
Alignment explanation
Indices: 15549298--15549342 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 22
15549288 AAAATATATT
*
15549298 AAAATATTTATAT-TTTTTTTG
1 AAAATATTTATATATTTGTTTG
15549319 AAAATATTTATATATTTGTTTG
1 AAAATATTTATATATTTGTTTG
15549341 AA
1 AA
15549343 TTTTTTAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.56
Consensus pattern (22 bp):
AAAATATTTATATATTTGTTTG
Found at i:15551199 original size:23 final size:22
Alignment explanation
Indices: 15551160--15551208 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
15551150 TCACTTTGAT
15551160 TTTAATTTTAAAAATTTAGTAAA
1 TTTAATTTTAAAAATTTA-TAAA
*
15551183 TTTAACTTTT-AATATTTATAAA
1 TTTAA-TTTTAAAAATTTATAAA
15551205 TTTA
1 TTTA
15551209 CATTATTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 8 0.33
23 12 0.50
24 4 0.17
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (22 bp):
TTTAATTTTAAAAATTTATAAA
Found at i:15563040 original size:26 final size:26
Alignment explanation
Indices: 15562990--15563042 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15562980 CAATATATGT
*
15562990 TATAATAATAAGAAATAAAATGAAAA
1 TATAATAATAAGAAATAAAAAGAAAA
*
15563016 TATAATTA-AAGAAATAATAAAGAAAA
1 TATAATAATAAGAAATAA-AAAGAAAA
15563042 T
1 T
15563043 GGAAAGAGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.25
Consensus pattern (26 bp):
TATAATAATAAGAAATAAAAAGAAAA
Found at i:15563080 original size:9 final size:9
Alignment explanation
Indices: 15563066--15563102 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
15563056 CATGCAAACT
15563066 AGAAAAGAA
1 AGAAAAGAA
15563075 AGAAAAGAA
1 AGAAAAGAA
15563084 A-AGAAAGAA
1 AGA-AAAGAA
15563093 AGAAAAGAA
1 AGAAAAGAA
15563102 A
1 A
15563103 AAGAGAATGC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 1 0.04
9 24 0.92
10 1 0.04
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (9 bp):
AGAAAAGAA
Found at i:15563081 original size:5 final size:5
Alignment explanation
Indices: 15563066--15563103 Score: 55
Period size: 5 Copynumber: 8.2 Consensus size: 5
15563056 CATGCAAACT
15563066 AGAAA AG-AA AGAAA AGAAA AG-AA AG-AA AGAAA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA A
15563104 AGAGAATGCA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 12 0.39
5 19 0.61
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:15563092 original size:18 final size:18
Alignment explanation
Indices: 15563069--15563103 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
15563059 GCAAACTAGA
15563069 AAAGAAAGAAAAGAAAAG
1 AAAGAAAGAAAAGAAAAG
15563087 AAAGAAAGAAAAGAAAA
1 AAAGAAAGAAAAGAAAA
15563104 AGAGAATGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (18 bp):
AAAGAAAGAAAAGAAAAG
Found at i:15564265 original size:20 final size:19
Alignment explanation
Indices: 15564212--15564257 Score: 67
Period size: 18 Copynumber: 2.4 Consensus size: 19
15564202 GACAAAGTTA
*
15564212 AGAAATGAAA-ATGAGATG
1 AGAAATGAAATATGAAATG
15564230 AGAAATGAAATATGAAATG
1 AGAAATGAAATATGAAATG
15564249 ATGAAATGA
1 A-GAAATGA
15564258 GATGTGAATC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 10 0.40
19 8 0.32
20 7 0.28
ACGTcount: A:0.57, C:0.00, G:0.24, T:0.20
Consensus pattern (19 bp):
AGAAATGAAATATGAAATG
Found at i:15584562 original size:34 final size:34
Alignment explanation
Indices: 15584512--15584690 Score: 184
Period size: 34 Copynumber: 5.3 Consensus size: 34
15584502 CAAATGTATG
* * *
15584512 ATAAGCAAGTTTATTGCTACCGTAATGATCTGTT
1 ATAAGCATGTTAATTGCTACTGTAATGATCTGTT
* *
15584546 ATAAGCATGTTAATTGCTACTGT-ATCAGTTTGTT
1 ATAAGCATGTTAATTGCTACTGTAATGA-TCTGTT
* *
15584580 ATAAGCATGTTTATTGCTACTGTAATGATCTATT
1 ATAAGCATGTTAATTGCTACTGTAATGATCTGTT
* * * *
15584614 ATAAGCATGATAATTGTTATTGTATTGA-CTTGTT
1 ATAAGCATGTTAATTGCTACTGTAATGATC-TGTT
* * *
15584648 ATAAGCATGTT-ATTACTACTGTATTGATTTGTT
1 ATAAGCATGTTAATTGCTACTGTAATGATCTGTT
*
15584681 ATAAGTATGT
1 ATAAGCATGT
15584691 CATGTTGCAT
Statistics
Matches: 120, Mismatches: 21, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
33 30 0.25
34 87 0.73
35 3 0.03
ACGTcount: A:0.29, C:0.10, G:0.17, T:0.44
Consensus pattern (34 bp):
ATAAGCATGTTAATTGCTACTGTAATGATCTGTT
Found at i:15584621 original size:68 final size:68
Alignment explanation
Indices: 15584512--15584690 Score: 227
Period size: 68 Copynumber: 2.6 Consensus size: 68
15584502 CAAATGTATG
* * *
15584512 ATAAGCAAGTTTATTGCTACCGTAATGATCTGTTATAAGCATGTTAATTGCTACTGTATCAG-TT
1 ATAAGCATGTTTATTGCTACTGTAATGATCTGTTATAAGCATGTTAATTGCTACTGTAT-AGACT
15584576 TGTT
65 TGTT
* * * * *
15584580 ATAAGCATGTTTATTGCTACTGTAATGATCTATTATAAGCATGATAATTGTTATTGTATTGACTT
1 ATAAGCATGTTTATTGCTACTGTAATGATCTGTTATAAGCATGTTAATTGCTACTGTATAGACTT
15584645 GTT
66 GTT
* * * *
15584648 ATAAGCATG-TTATTACTACTGTATTGATTTGTTATAAGTATGT
1 ATAAGCATGTTTATTGCTACTGTAATGATCTGTTATAAGCATGT
15584691 CATGTTGCAT
Statistics
Matches: 96, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
67 29 0.30
68 67 0.70
ACGTcount: A:0.29, C:0.10, G:0.17, T:0.44
Consensus pattern (68 bp):
ATAAGCATGTTTATTGCTACTGTAATGATCTGTTATAAGCATGTTAATTGCTACTGTATAGACTT
GTT
Found at i:15584784 original size:24 final size:24
Alignment explanation
Indices: 15584757--15584825 Score: 93
Period size: 24 Copynumber: 2.9 Consensus size: 24
15584747 CTACAATGAC
*
15584757 CAGTGGTTCATCCACAACGTTTTT
1 CAGTGGTTCATCCACAACGTATTT
* *
15584781 CAGTGGTTCATCCACAATGCATTT
1 CAGTGGTTCATCCACAACGTATTT
* *
15584805 CAATGGTTTATCCACAACGTA
1 CAGTGGTTCATCCACAACGTA
15584826 CTAGTAACTT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.33
Consensus pattern (24 bp):
CAGTGGTTCATCCACAACGTATTT
Found at i:15586234 original size:41 final size:41
Alignment explanation
Indices: 15586153--15586236 Score: 100
Period size: 41 Copynumber: 2.0 Consensus size: 41
15586143 GATATTTTGG
15586153 TAATTTTAAATTATTTTATATATTTTAATTTTTAAATAATTA
1 TAATTTTAAATTATTTTATATATTTTAATTTTT-AATAATTA
* * *
15586195 TAATTTT-AGTTATTTTATAATAATTTTTATTTTT-GTAATTA
1 TAATTTTAAATTATTTTAT-AT-ATTTTAATTTTTAATAATTA
15586236 T
1 T
15586237 GTTTTTGAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
41 17 0.46
42 9 0.24
43 11 0.30
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (41 bp):
TAATTTTAAATTATTTTATATATTTTAATTTTTAATAATTA
Found at i:15586327 original size:60 final size:61
Alignment explanation
Indices: 15586247--15586363 Score: 155
Period size: 60 Copynumber: 1.9 Consensus size: 61
15586237 GTTTTTGAAT
* * * *
15586247 TTTTAAAATTAAGACCAAATTGATAGAATTTGT-AAATATTGAAGATTAAATTTATTTAAA
1 TTTTAAAATTAAGACCAAATTGACAGAATGTGTAAAATATTAAAGACTAAATTTATTTAAA
* * * *
15586307 TTTTAAATTTATGACTAAATTGACAGAATGTGTAAAATATTAAATACTAAATTTATT
1 TTTTAAAATTAAGACCAAATTGACAGAATGTGTAAAATATTAAAGACTAAATTTATT
15586364 ATGCTAATAA
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
60 28 0.58
61 20 0.42
ACGTcount: A:0.45, C:0.04, G:0.09, T:0.41
Consensus pattern (61 bp):
TTTTAAAATTAAGACCAAATTGACAGAATGTGTAAAATATTAAAGACTAAATTTATTTAAA
Found at i:15586594 original size:21 final size:21
Alignment explanation
Indices: 15586568--15586610 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
15586558 GGTTCGCTGT
* *
15586568 ATTGGATTAGCGGTGTATTGG
1 ATTGGATTAGAGGTGTAATGG
15586589 ATTGGATTAGAGGTGTAATGG
1 ATTGGATTAGAGGTGTAATGG
15586610 A
1 A
15586611 ATAGAGGTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.02, G:0.37, T:0.35
Consensus pattern (21 bp):
ATTGGATTAGAGGTGTAATGG
Found at i:15586610 original size:16 final size:16
Alignment explanation
Indices: 15586591--15586623 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
15586581 TGTATTGGAT
*
15586591 TGGATTAGAGGTGTAA
1 TGGAATAGAGGTGTAA
15586607 TGGAATAGAGGTGTAA
1 TGGAATAGAGGTGTAA
15586623 T
1 T
15586624 AGCAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.30
Consensus pattern (16 bp):
TGGAATAGAGGTGTAA
Found at i:15586698 original size:44 final size:45
Alignment explanation
Indices: 15586602--15586699 Score: 144
Period size: 45 Copynumber: 2.2 Consensus size: 45
15586592 GGATTAGAGG
* *
15586602 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACAACTGTTTGGTTGAA
* **
15586647 TGTAATGGAATAGAGGCGTAATAGTAAAAC-TGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACAACTGTTTGGTTGAA
15586691 TGTAATGGA
1 TGTAATGGA
15586700 GGTGTAATAG
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
44 21 0.44
45 27 0.56
ACGTcount: A:0.35, C:0.05, G:0.29, T:0.32
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACAACTGTTTGGTTGAA
Found at i:15586878 original size:18 final size:17
Alignment explanation
Indices: 15586857--15586891 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
15586847 TTATTATTTA
*
15586857 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
15586875 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
15586892 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:15586885 original size:28 final size:27
Alignment explanation
Indices: 15586814--15586887 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
15586804 TATTTATTAT
*
15586814 CAAAATAAATAATTTAATCATATTTAAA
1 CAAAATATATAATTTAAT-ATATTTAAA
* * *
15586842 CATAAT-TATTATTTAATATATTTTAAT
1 CAAAATATATAATTTAATATA-TTTAAA
*
15586869 TAAAATATATAATTTAATA
1 CAAAATATATAATTTAATA
15586888 AAATTCTTAA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
26 3 0.08
27 18 0.49
28 16 0.43
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (27 bp):
CAAAATATATAATTTAATATATTTAAA
Found at i:15587019 original size:16 final size:17
Alignment explanation
Indices: 15586993--15587034 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
15586983 AAACATAATT
15586993 ATTATAAATATAT-TTTA
1 ATTA-AAATATATATTTA
15587010 ATTAAAATATATAATTTA
1 ATTAAAATATAT-ATTTA
15587028 A-TAAAAT
1 ATTAAAAT
15587035 TCTTAATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 8 0.35
17 10 0.43
18 5 0.22
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
ATTAAAATATATATTTA
Found at i:15587027 original size:18 final size:17
Alignment explanation
Indices: 15587000--15587034 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
15586990 ATTATTATAA
*
15587000 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
15587018 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
15587035 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:15587045 original size:143 final size:146
Alignment explanation
Indices: 15586777--15587046 Score: 476
Period size: 143 Copynumber: 1.9 Consensus size: 146
15586767 ATGATTATTG
15586777 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAATAAATAATTTAATCATATTTAAA
1 TTATTGTTATTTAAATTTTAATAAGATTA--TATTATCAAAATAAATAATTTAATCATATTTAAA
*
15586842 CATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCA
64 CATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCA
15586907 GAAATTTGTTTTGGTAAA
129 GAAATTTGTTTTGGTAAA
15586925 TTATT-TTATTTAAATTTTAATAAGATTA-A-TATCAATAATAAATAATTTAATCATATTTAAAC
1 TTATTGTTATTTAAATTTTAATAAGATTATATTATCAA-AATAAATAATTTAATCATATTTAAAC
15586987 ATAATTATTA-TAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
65 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
15587047 ATATTCTTAT
Statistics
Matches: 120, Mismatches: 1, Indels: 7
0.94 0.01 0.05
Matches are distributed among these distances:
143 55 0.46
144 37 0.31
147 23 0.19
148 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (146 bp):
TTATTGTTATTTAAATTTTAATAAGATTATATTATCAAAATAAATAATTTAATCATATTTAAACA
TAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAGA
AATTTGTTTTGGTAAA
Found at i:15587222 original size:17 final size:16
Alignment explanation
Indices: 15587200--15587246 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
15587190 ACTCAAATTA
15587200 TAATATATGATTATAAC
1 TAATATATGATT-TAAC
*
15587217 T-A-ATATGATTTAAT
1 TAATATATGATTTAAC
15587231 TAAATATATGATTTAA
1 T-AATATATGATTTAA
15587247 TAAAATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 4 0.15
15 8 0.31
16 2 0.08
17 12 0.46
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (16 bp):
TAATATATGATTTAAC
Found at i:15587247 original size:17 final size:17
Alignment explanation
Indices: 15587219--15587252 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
15587209 ATTATAACTA
*
15587219 ATATGATTTAATTAAAT
1 ATATGATTTAATAAAAT
15587236 ATATGATTTAATAAAAT
1 ATATGATTTAATAAAAT
15587253 TTAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
ATATGATTTAATAAAAT
Found at i:15587395 original size:93 final size:91
Alignment explanation
Indices: 15587285--15587478 Score: 275
Period size: 92 Copynumber: 2.1 Consensus size: 91
15587275 GATTATAGTT
* * *
15587285 TATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATT-TAATAATAATATATAATTTC
1 TATGAATTTATACAATTTAAAATAATTAA-TATTA-ATATAATTAT-ATAATAATATATAATTCC
* *
15587348 ATAAAATTCTTGATAATAAAAATTTTCTTA
63 ATAAAATTCTTAATAAT-AAAATGTTCTTA
* *
15587378 TATGAATTTATACAATTTAAAATAATTAATATTAATATAATTATATAGTGATATATAATTCCATA
1 TATGAATTTATACAATTTAAAATAATTAATATTAATATAATTATATAATAATATATAATTCCATA
15587443 AAATTCTTAATAATAAAATGTTCTTA
66 AAATTCTTAATAATAAAATGTTCTTA
15587469 TATGAATTTA
1 TATGAATTTA
15587479 CTAAAATCAA
Statistics
Matches: 92, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
91 21 0.23
92 39 0.42
93 29 0.32
94 3 0.03
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.44
Consensus pattern (91 bp):
TATGAATTTATACAATTTAAAATAATTAATATTAATATAATTATATAATAATATATAATTCCATA
AAATTCTTAATAATAAAATGTTCTTA
Found at i:15595966 original size:22 final size:22
Alignment explanation
Indices: 15595938--15595999 Score: 81
Period size: 22 Copynumber: 2.9 Consensus size: 22
15595928 ACGGGTTTAG
15595938 CACTTTTATGCTCTCTGTTCAA
1 CACTTTTATGCTCTCTGTTCAA
* *
15595960 CACTTTTGTGCTCTCTGTTTAA
1 CACTTTTATGCTCTCTGTTCAA
**
15595982 C-CTTCAATGCTCTCTGTT
1 CACTTTTATGCTCTCTGTT
15596000 TAGCACTACG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
21 14 0.40
22 21 0.60
ACGTcount: A:0.15, C:0.27, G:0.11, T:0.47
Consensus pattern (22 bp):
CACTTTTATGCTCTCTGTTCAA
Found at i:15595994 original size:21 final size:22
Alignment explanation
Indices: 15595945--15596006 Score: 72
Period size: 21 Copynumber: 2.9 Consensus size: 22
15595935 TAGCACTTTT
* **
15595945 ATGCTCTCTGTTCAACACTTTT
1 ATGCTCTCTGTTTAACACTTCA
*
15595967 GTGCTCTCTGTTTAAC-CTTCA
1 ATGCTCTCTGTTTAACACTTCA
*
15595988 ATGCTCTCTGTTTAGCACT
1 ATGCTCTCTGTTTAACACT
15596007 ACGGTGCTCT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 17 0.52
22 16 0.48
ACGTcount: A:0.16, C:0.27, G:0.13, T:0.44
Consensus pattern (22 bp):
ATGCTCTCTGTTTAACACTTCA
Found at i:15596017 original size:22 final size:21
Alignment explanation
Indices: 15595967--15596018 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
15595957 CAACACTTTT
*
15595967 GTGCTCTCTGTTTAACCTTCA
1 GTGCTCTCTGTTTAACCTACA
* * *
15595988 ATGCTCTCTGTTTAGCACTACG
1 GTGCTCTCTGTTTAAC-CTACA
15596010 GTGCTCTCT
1 GTGCTCTCT
15596019 AGTGTGGTGT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 14 0.56
22 11 0.44
ACGTcount: A:0.13, C:0.29, G:0.17, T:0.40
Consensus pattern (21 bp):
GTGCTCTCTGTTTAACCTACA
Found at i:15596997 original size:20 final size:20
Alignment explanation
Indices: 15596974--15597024 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
15596964 CTTGTAAAGG
15596974 AGTATTGATACCATAATTCA
1 AGTATTGATACCATAATTCA
15596994 AGTATTGATACCATAATTCA
1 AGTATTGATACCATAATTCA
*
15597014 AGTATCGATAC
1 AGTATTGATAC
15597025 TTGGAGATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (20 bp):
AGTATTGATACCATAATTCA
Found at i:15599967 original size:27 final size:27
Alignment explanation
Indices: 15599925--15600019 Score: 138
Period size: 27 Copynumber: 3.6 Consensus size: 27
15599915 ATAACATAAA
* *
15599925 GCAT-ACAGTCATTTTATAACATAGCG
1 GCATAACAGTCATTTTACAACATAGGG
*
15599951 GCATAACAATCATTTTACAACATAGGG
1 GCATAACAGTCATTTTACAACATAGGG
* *
15599978 GCATAACAGTCATTTTACCACGTAGGG
1 GCATAACAGTCATTTTACAACATAGGG
15600005 GCATAACAGTCATTT
1 GCATAACAGTCATTT
15600020 CATATCAGTT
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
26 4 0.06
27 58 0.94
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (27 bp):
GCATAACAGTCATTTTACAACATAGGG
Found at i:15600530 original size:9 final size:9
Alignment explanation
Indices: 15600513--15600549 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
15600503 TGAGTTTTCG
15600513 AATTCGAAT
1 AATTCGAAT
*
15600522 AACTCGAAT
1 AATTCGAAT
15600531 AATTCGAAT
1 AATTCGAAT
15600540 AATTCGAAT
1 AATTCGAAT
15600549 A
1 A
15600550 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:15601103 original size:17 final size:17
Alignment explanation
Indices: 15601083--15601129 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
15601073 CACATTTTAT
15601083 ATTATTTATATTATTGA
1 ATTATTTATATTATTGA
15601100 ATTATTTAGTCA-TATTGA
1 ATTATTTA-T-ATTATTGA
15601118 A-TATTTATATTA
1 ATTATTTATATTA
15601130 AAATTGAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
15 1 0.04
16 3 0.11
17 14 0.52
18 8 0.30
19 1 0.04
ACGTcount: A:0.36, C:0.02, G:0.06, T:0.55
Consensus pattern (17 bp):
ATTATTTATATTATTGA
Found at i:15603685 original size:23 final size:22
Alignment explanation
Indices: 15603635--15603685 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
15603625 TTATAAATTC
15603635 ATAAT-ATTTTTATTTTATTTT
1 ATAATGATTTTTATTTTATTTT
*
15603656 ATTATGATTTTATATTTTAGTTTT
1 ATAATGATTTT-TATTTTA-TTTT
15603680 -TAATGA
1 ATAATGA
15603686 AAGGTTTACA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 4 0.16
22 5 0.20
23 12 0.48
24 4 0.16
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (22 bp):
ATAATGATTTTTATTTTATTTT
Found at i:15616229 original size:25 final size:26
Alignment explanation
Indices: 15616201--15616263 Score: 60
Period size: 26 Copynumber: 2.4 Consensus size: 26
15616191 CATTTCAATT
15616201 ATGTGTTAATTTC-AAGACTTATGTA
1 ATGTGTTAATTTCAAAGACTTATGTA
*
15616226 A--TGTTAGTGATTCAAAGACTTATGTA
1 ATGTGTTAAT--TTCAAAGACTTATGTA
*
15616252 ATGCTTTTAATT
1 ATG-TGTTAATT
15616264 ATGTAGTGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 10
0.69 0.07 0.24
Matches are distributed among these distances:
23 6 0.21
25 4 0.14
26 13 0.45
27 1 0.03
29 5 0.17
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (26 bp):
ATGTGTTAATTTCAAAGACTTATGTA
Found at i:15616290 original size:9 final size:9
Alignment explanation
Indices: 15616276--15616331 Score: 60
Period size: 9 Copynumber: 6.2 Consensus size: 9
15616266 GTAGTGATTC
15616276 AATTCGGTT
1 AATTCGGTT
*
15616285 AATTCGGGT
1 AATTCGGTT
15616294 AATTCGGTT
1 AATTCGGTT
15616303 AATTCAGG-T
1 AATTC-GGTT
* *
15616312 GATTCGGGT
1 AATTCGGTT
*
15616321 AATTCGATT
1 AATTCGGTT
15616330 AA
1 AA
15616332 CTAACCGAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
8 2 0.05
9 35 0.90
10 2 0.05
ACGTcount: A:0.27, C:0.11, G:0.25, T:0.38
Consensus pattern (9 bp):
AATTCGGTT
Found at i:15616299 original size:18 final size:18
Alignment explanation
Indices: 15616276--15616326 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
15616266 GTAGTGATTC
15616276 AATTCGGTTAATTCGGGT
1 AATTCGGTTAATTCGGGT
*
15616294 AATTCGGTTAATTCAGGT
1 AATTCGGTTAATTCGGGT
* *
15616312 GATTCGGGTAATTCG
1 AATTCGGTTAATTCG
15616327 ATTAACTAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.24, C:0.12, G:0.27, T:0.37
Consensus pattern (18 bp):
AATTCGGTTAATTCGGGT
Found at i:15618640 original size:42 final size:42
Alignment explanation
Indices: 15618593--15618680 Score: 115
Period size: 42 Copynumber: 2.1 Consensus size: 42
15618583 TTTCATTTTT
* **
15618593 CACACGAGCGTGTACCTTAGTCGTACGG-CTGTATTTCTCAAC
1 CACACGAGCGTGTACCTCAGTCACACGGTC-GTATTTCTCAAC
* *
15618635 CACACGGGCGTGTACCTCAGTCACACGGTCGTGTTTCTCAAC
1 CACACGAGCGTGTACCTCAGTCACACGGTCGTATTTCTCAAC
15618677 CACA
1 CACA
15618681 AGGGTGTGTG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 39 0.98
43 1 0.03
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.25
Consensus pattern (42 bp):
CACACGAGCGTGTACCTCAGTCACACGGTCGTATTTCTCAAC
Found at i:15618653 original size:21 final size:21
Alignment explanation
Indices: 15618629--15618689 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 21
15618619 GGCTGTATTT
15618629 CTCAACCACACGGGCGTGTAC
1 CTCAACCACACGGGCGTGTAC
** * **
15618650 CTCAGTCACACGGTCGTGTTT
1 CTCAACCACACGGGCGTGTAC
* *
15618671 CTCAACCACAAGGGTGTGT
1 CTCAACCACACGGGCGTGT
15618690 GGCTTAGTCA
Statistics
Matches: 30, Mismatches: 10, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (21 bp):
CTCAACCACACGGGCGTGTAC
Found at i:15618699 original size:42 final size:42
Alignment explanation
Indices: 15618626--15618709 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
15618616 TACGGCTGTA
* *
15618626 TTTCTCAACCACACGGGCGTGTACCTCAGTCACACGGTCGTG
1 TTTCTCAACCACAAGGGCGTGTACCTCAGTCACACGATCGTG
* ** *
15618668 TTTCTCAACCACAAGGGTGTGTGGCTTAGTCACACGATCGTG
1 TTTCTCAACCACAAGGGCGTGTACCTCAGTCACACGATCGTG
15618710 ACTTTCCTAC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.20, C:0.29, G:0.25, T:0.26
Consensus pattern (42 bp):
TTTCTCAACCACAAGGGCGTGTACCTCAGTCACACGATCGTG
Found at i:15634735 original size:21 final size:19
Alignment explanation
Indices: 15634710--15634774 Score: 58
Period size: 21 Copynumber: 3.2 Consensus size: 19
15634700 AAAAAGATTT
15634710 ATTTTAAAAAATATATATAAA
1 ATTTTAAAAAAT-TAT-TAAA
* *
15634731 GTTTTAAAACATTATTAAA
1 ATTTTAAAAAATTATTAAA
*
15634750 ATTTATAAAAATATTTAATAAA
1 ATTT-TAAAAA-A-TTATTAAA
15634772 ATT
1 ATT
15634775 CAAAACAATT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
19 7 0.19
20 8 0.22
21 11 0.31
22 10 0.28
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (19 bp):
ATTTTAAAAAATTATTAAA
Found at i:15635171 original size:31 final size:30
Alignment explanation
Indices: 15635136--15635209 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 30
15635126 AAATTTATTA
*
15635136 TTTTAGTCACTCTAGTTAGTTGAATTTCATG
1 TTTTAGTCACTCTA-TTAGTTAAATTTCATG
* *
15635167 TTTTAGTCACTTCTATTTGTTAAATTTCTTG
1 TTTTAGTCAC-TCTATTAGTTAAATTTCATG
*
15635198 TTTTAGCCACTC
1 TTTTAGTCACTC
15635210 CTCATTAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
30 2 0.05
31 32 0.84
32 4 0.11
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.51
Consensus pattern (30 bp):
TTTTAGTCACTCTATTAGTTAAATTTCATG
Found at i:15639661 original size:13 final size:13
Alignment explanation
Indices: 15639643--15639671 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
15639633 GAATTTTTTC
15639643 TTATATTATTACA
1 TTATATTATTACA
15639656 TTATATTATTACA
1 TTATATTATTACA
15639669 TTA
1 TTA
15639672 ATAATCAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (13 bp):
TTATATTATTACA
Found at i:15640563 original size:30 final size:31
Alignment explanation
Indices: 15640502--15640561 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 31
15640492 GGGAGGGGGA
*
15640502 TGAGAGGAGAGTAAAAGGTTTGGAGGAAAAG
1 TGAGAGGAGAGTAAAAGGTTTGAAGGAAAAG
*
15640533 TGAGAGG-GAGTAAAAGTTTTGAATGGAAA
1 TGAGAGGAGAGTAAAAGGTTTGAA-GGAAA
15640562 GTAAAGAGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 14 0.54
31 12 0.46
ACGTcount: A:0.42, C:0.00, G:0.38, T:0.20
Consensus pattern (31 bp):
TGAGAGGAGAGTAAAAGGTTTGAAGGAAAAG
Found at i:15640570 original size:31 final size:31
Alignment explanation
Indices: 15640504--15640570 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 31
15640494 GAGGGGGATG
* *
15640504 AGAGGAGAGTAAAAGGTTTGGAGGAAAAGTG
1 AGAGGAGAGTAAAAGGTTTGAAGGAAAAGTA
*
15640535 AGAGG-GAGTAAAAGTTTTGAATGG-AAAGTAA
1 AGAGGAGAGTAAAAGGTTTGAA-GGAAAAGT-A
15640566 AGAGG
1 AGAGG
15640571 TTTGGGAGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
30 19 0.61
31 12 0.39
ACGTcount: A:0.43, C:0.00, G:0.39, T:0.18
Consensus pattern (31 bp):
AGAGGAGAGTAAAAGGTTTGAAGGAAAAGTA
Found at i:15644802 original size:43 final size:42
Alignment explanation
Indices: 15644742--15644838 Score: 142
Period size: 43 Copynumber: 2.2 Consensus size: 42
15644732 TTCCTAAAAG
15644742 ATAATATCCATTAGGAATCAAATTGCT-AAGAGATAATATCAT
1 ATAATATCCATTAGGAATCAAATTGCTAAAG-GATAATATCAT
15644784 ATAATATTCCATTAGGAATCAAATTGCTAAAGGATAATATACCAT
1 ATAATA-TCCATTAGGAATCAAATTGCTAAAGGATAATAT--CAT
15644829 AATAATATCC
1 -ATAATATCC
15644839 TAACATCCTC
Statistics
Matches: 50, Mismatches: 0, Indels: 7
0.88 0.00 0.12
Matches are distributed among these distances:
42 6 0.12
43 29 0.58
44 3 0.06
45 6 0.12
46 6 0.12
ACGTcount: A:0.45, C:0.13, G:0.10, T:0.31
Consensus pattern (42 bp):
ATAATATCCATTAGGAATCAAATTGCTAAAGGATAATATCAT
Found at i:15647041 original size:14 final size:15
Alignment explanation
Indices: 15647017--15647049 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
15647007 CGAAGATCAT
15647017 CAAACAAGATATAAG
1 CAAACAAGATATAAG
15647032 CAAA-AAGATATAAG
1 CAAACAAGATATAAG
15647046 CAAA
1 CAAA
15647050 TTTCTCTAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.64, C:0.12, G:0.12, T:0.12
Consensus pattern (15 bp):
CAAACAAGATATAAG
Found at i:15649534 original size:40 final size:40
Alignment explanation
Indices: 15649426--15649536 Score: 123
Period size: 40 Copynumber: 2.8 Consensus size: 40
15649416 GCGTTATTGA
* *
15649426 CAGTTTATCTGCATCACTGGTGGCTTGTCCACATTACTGG
1 CAGTTTATCTGCATTATTGGTGGCTTGTCCACATTACTGG
* * * * * * *
15649466 TAGCTTGTCTGTAATATTCGTGGCTTGTCCACATTTCTGG
1 CAGTTTATCTGCATTATTGGTGGCTTGTCCACATTACTGG
* *
15649506 CAGTTTATCTACATTATTGGTGGTTTGTCCA
1 CAGTTTATCTGCATTATTGGTGGCTTGTCCA
15649537 TAAGCTGGTG
Statistics
Matches: 54, Mismatches: 17, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.41
Consensus pattern (40 bp):
CAGTTTATCTGCATTATTGGTGGCTTGTCCACATTACTGG
Found at i:15649639 original size:24 final size:24
Alignment explanation
Indices: 15649607--15649654 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
15649597 GTTGGATAGG
*
15649607 ACCTTTTTCTGAAAACACTGCATT
1 ACCTTTTTCTAAAAACACTGCATT
*
15649631 ACCTTTTTCTAAAAACATTGCATT
1 ACCTTTTTCTAAAAACACTGCATT
15649655 GACATGATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.31, C:0.23, G:0.06, T:0.40
Consensus pattern (24 bp):
ACCTTTTTCTAAAAACACTGCATT
Found at i:15652835 original size:36 final size:36
Alignment explanation
Indices: 15652755--15652835 Score: 92
Period size: 36 Copynumber: 2.2 Consensus size: 36
15652745 AATATAATCT
* * *
15652755 CTGTCACATGGCATGAATAACATACCCACATATTCA
1 CTGTCACATGACATGAACAACACACCCACATATTCA
* *
15652791 CTGCCACATGACATGAACAACACACCCTCAT-TTACA
1 CTGTCACATGACATGAACAACACACCCACATATT-CA
*
15652827 CTTTCACAT
1 CTGTCACAT
15652836 CAGTCATCAT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
35 2 0.05
36 35 0.95
ACGTcount: A:0.35, C:0.32, G:0.09, T:0.25
Consensus pattern (36 bp):
CTGTCACATGACATGAACAACACACCCACATATTCA
Found at i:15653741 original size:62 final size:61
Alignment explanation
Indices: 15653644--15653767 Score: 203
Period size: 62 Copynumber: 2.0 Consensus size: 61
15653634 TGAATGCAAG
* * *
15653644 AAAAACAAGCTTTGATGCAAATCCTAGAAAACTCACTCTTGAAGAAGAATAAGAAATTAAAT
1 AAAAACAAGCTTTGAAGCAAATCCTAGAAAACTCACTCTTAAAGAAG-AGAAGAAATTAAAT
*
15653706 AAAAACGAGCTTTGAAGCAAATCCTAGAAAACTCACTCTTAAAGAAGAGAAGAAATTAAAT
1 AAAAACAAGCTTTGAAGCAAATCCTAGAAAACTCACTCTTAAAGAAGAGAAGAAATTAAAT
15653767 A
1 A
15653768 GATTTTTGGG
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
61 14 0.24
62 44 0.76
ACGTcount: A:0.51, C:0.15, G:0.14, T:0.21
Consensus pattern (61 bp):
AAAAACAAGCTTTGAAGCAAATCCTAGAAAACTCACTCTTAAAGAAGAGAAGAAATTAAAT
Found at i:15654251 original size:15 final size:15
Alignment explanation
Indices: 15654231--15654270 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
15654221 GGTTCAATTT
*
15654231 TGGTGATGGTAATAG
1 TGGTGATGGTAATAA
15654246 TGGTGATGGTAATAA
1 TGGTGATGGTAATAA
*
15654261 TGGTGGTGGT
1 TGGTGATGGT
15654271 GGTGGTGGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.23, C:0.00, G:0.42, T:0.35
Consensus pattern (15 bp):
TGGTGATGGTAATAA
Found at i:15654286 original size:3 final size:3
Alignment explanation
Indices: 15654280--15654309 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
15654270 TGGTGGTGGT
15654280 GGA GGA GGA GGA GGA GGA GGA GGA GGA GGA
1 GGA GGA GGA GGA GGA GGA GGA GGA GGA GGA
15654310 CAAGTCTCGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.67, T:0.00
Consensus pattern (3 bp):
GGA
Found at i:15656051 original size:90 final size:90
Alignment explanation
Indices: 15655898--15656159 Score: 264
Period size: 90 Copynumber: 2.9 Consensus size: 90
15655888 CTACAAAACT
* *
15655898 CTGGTGGTTCATCCACAGATTATCTAGCAGCTTTTATCCACAACTATTTTGTACATTCACAACCA
1 CTGGTGGTTCATCCACCGATTATCTAGCAGCTTTTATCCACAACTATGTTGTACATTCACAACCA
*
15655963 TCTAGCAGTGTATTAACCTGCAACA
66 TCTAGCAGCGTATTAACCTGCAACA
* * * * ** *
15655988 CTGGTGGTTCATCCACCTATTTTCTGGTAGCTTTTATCTGCAACTATGTTGTGCATT-ATCAACC
1 CTGGTGGTTCATCCACCGATTATCTAGCAGCTTTTATCCACAACTATGTTGTACATTCA-CAACC
* *
15656052 ATCTGGGAGCGTATTAACCTGCAACA
65 ATCTAGCAGCGTATTAACCTGCAACA
* * * * **
15656078 CTAGTGGTTCATCCACCCA-TATTCTAGCAG-TTCTCATATGCA-AA-AATGTTGTTTATTCACA
1 CTGGTGGTTCATCCACCGATTA-TCTAGCAGCTT-T--TATCCACAACTATGTTGTACATTCACA
* *
15656139 ACCATCTAGCAACATATTAAC
62 ACCATCTAGCAGCGTATTAAC
15656160 ATGTAACTTT
Statistics
Matches: 139, Mismatches: 27, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
89 4 0.03
90 129 0.93
91 3 0.02
92 3 0.02
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (90 bp):
CTGGTGGTTCATCCACCGATTATCTAGCAGCTTTTATCCACAACTATGTTGTACATTCACAACCA
TCTAGCAGCGTATTAACCTGCAACA
Found at i:15657882 original size:55 final size:55
Alignment explanation
Indices: 15657779--15657907 Score: 129
Period size: 55 Copynumber: 2.3 Consensus size: 55
15657769 ATAAGGAGAG
* * * *
15657779 GAAAAGAAGAGAAGGAGAAGGAGAGGGCGGAAAGGGAAGGGAAGGGAAAAAGAAA
1 GAAAAAAAGAGAAGGAGAAAGAGAGAGCGGAAAGGGAAGAGAAGGGAAAAAGAAA
* *
15657834 GAAAAAAAGAGAAGGAGAATAGAGAGAG-GG-AAGGAGAAAGAGAAGGAAAAAAATAAA
1 GAAAAAAAGAGAAGGAGAA-AGAGAGAGCGGAAAGG-G-AAGAGAAGG-GAAAAAGAAA
* *
15657891 TAAAAAAGGA-AAGGAGA
1 GAAAAAAAGAGAAGGAGA
15657908 GTTTGTCTTG
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
54 4 0.06
55 21 0.34
56 21 0.34
57 16 0.26
ACGTcount: A:0.59, C:0.01, G:0.38, T:0.02
Consensus pattern (55 bp):
GAAAAAAAGAGAAGGAGAAAGAGAGAGCGGAAAGGGAAGAGAAGGGAAAAAGAAA
Found at i:15658456 original size:19 final size:18
Alignment explanation
Indices: 15658411--15658456 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
15658401 GTTTTTAAAA
*
15658411 TTTGTTTTATATTATTTT
1 TTTGTTTTATATAATTTT
*
15658429 TATTATTTTAATATAATTTT
1 T-TTGTTTT-ATATAATTTT
15658449 TTTGTTTT
1 TTTGTTTT
15658457 TTATGTAGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 1 0.04
19 12 0.52
20 10 0.43
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.74
Consensus pattern (18 bp):
TTTGTTTTATATAATTTT
Found at i:15659635 original size:14 final size:14
Alignment explanation
Indices: 15659624--15659650 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15659614 TTTTCTAATG
15659624 ATACTATTCTAACT
1 ATACTATTCTAACT
15659638 ATACTATTCTAAC
1 ATACTATTCTAAC
15659651 ATGTAATTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (14 bp):
ATACTATTCTAACT
Found at i:15660292 original size:12 final size:12
Alignment explanation
Indices: 15660277--15660310 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
15660267 TATAGAGGTC
15660277 GAGCCAGAGCTA
1 GAGCCAGAGCTA
*
15660289 GAGCCAGAGCTC
1 GAGCCAGAGCTA
*
15660301 GAGCCTGAGC
1 GAGCCAGAGC
15660311 CCAAGCCACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.35, T:0.09
Consensus pattern (12 bp):
GAGCCAGAGCTA
Found at i:15660923 original size:14 final size:14
Alignment explanation
Indices: 15660904--15660934 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
15660894 AACTTGTAAC
15660904 AAATTTTGTAATAT
1 AAATTTTGTAATAT
*
15660918 AAATTTTGTTATAT
1 AAATTTTGTAATAT
15660932 AAA
1 AAA
15660935 GTAAATACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (14 bp):
AAATTTTGTAATAT
Found at i:15663972 original size:18 final size:18
Alignment explanation
Indices: 15663935--15663973 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
15663925 ATACATTTTA
* **
15663935 TTTCTTCTCTTTTCTTTC
1 TTTCTTCTCTTCTCCCTC
15663953 TTTCTTCTCTTCTCCCTC
1 TTTCTTCTCTTCTCCCTC
15663971 TTT
1 TTT
15663974 TGTTCTGCTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTCTTCTCTTCTCCCTC
Found at i:15664092 original size:27 final size:27
Alignment explanation
Indices: 15664051--15664128 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 27
15664041 ATACTAGGTA
*
15664051 TGCCGCCTTTCAGATAGACACCACCAG
1 TGCCGCCTATCAGATAGACACCACCAG
* **** **
15664078 TGTCGCCTATCAGATAGGGGTCACTGG
1 TGCCGCCTATCAGATAGACACCACCAG
15664105 TGCCGCCTATCAGATAGACACCAC
1 TGCCGCCTATCAGATAGACACCAC
15664129 ACCCCTATAC
Statistics
Matches: 38, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.24, C:0.32, G:0.23, T:0.21
Consensus pattern (27 bp):
TGCCGCCTATCAGATAGACACCACCAG
Found at i:15666355 original size:11 final size:11
Alignment explanation
Indices: 15666341--15666382 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
15666331 CTGATTTTAT
15666341 AAATTTTTTTG
1 AAATTTTTTTG
*
15666352 AAATTTTTCT-
1 AAATTTTTTTG
*
15666362 AATTTTTTTTG
1 AAATTTTTTTG
15666373 ACAATTTTTT
1 A-AATTTTTT
15666383 ATTTTCTCTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
10 8 0.32
11 10 0.40
12 7 0.28
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.64
Consensus pattern (11 bp):
AAATTTTTTTG
Found at i:15666359 original size:21 final size:22
Alignment explanation
Indices: 15666335--15666381 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
15666325 TTTTGTCTGA
15666335 TTTTATAAATTTTTTTGA-AAT
1 TTTTATAAATTTTTTTGACAAT
* *
15666356 TTTTCTAATTTTTTTTGACAAT
1 TTTTATAAATTTTTTTGACAAT
15666378 TTTT
1 TTTT
15666382 TATTTTCTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.66
Consensus pattern (22 bp):
TTTTATAAATTTTTTTGACAAT
Found at i:15666608 original size:27 final size:26
Alignment explanation
Indices: 15666568--15666621 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
15666558 TAATTCTATA
*
15666568 TATTTTTATTTTATAATTTTTTGCTTT
1 TATTTTTATTTTAT-ATTTTTTCCTTT
*
15666595 TATTTTT-TTCTTATTTTTTTTCCTTT
1 TATTTTTATT-TTATATTTTTTCCTTT
15666621 T
1 T
15666622 TTTAATTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.13, C:0.07, G:0.02, T:0.78
Consensus pattern (26 bp):
TATTTTTATTTTATATTTTTTCCTTT
Found at i:15679127 original size:41 final size:41
Alignment explanation
Indices: 15679079--15679269 Score: 201
Period size: 41 Copynumber: 4.7 Consensus size: 41
15679069 ATGGGGTGTT
* * *
15679079 ATTCAGGCTTTGTGCATAGTAGGCTTAGTGTCGGTGTATTA
1 ATTCAGGCTTCGTGCCTAGCAGGCTTAGTGTCGGTGTATTA
* * *
15679120 ATTCAGGCTTCATGCCTAGCAAGCTTAGTGTCGGTGTATTG
1 ATTCAGGCTTCGTGCCTAGCAGGCTTAGTGTCGGTGTATTA
* * *
15679161 ATTCAAGCTTCGTGCTTAGCAAGCTTAGTGTCGGTGTA-TA
1 ATTCAGGCTTCGTGCCTAGCAGGCTTAGTGTCGGTGTATTA
** * * *
15679201 GATTCAAACTTTGTGTCTAGCAGGCTTAGTGCCGGTG--TT-
1 -ATTCAGGCTTCGTGCCTAGCAGGCTTAGTGTCGGTGTATTA
**
15679240 ATTCAGGCTTAATGCCTAGCAGGCTTAGTG
1 ATTCAGGCTTCGTGCCTAGCAGGCTTAGTG
15679270 CCAATGTTAC
Statistics
Matches: 127, Mismatches: 21, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
38 25 0.20
40 2 0.02
41 100 0.79
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.35
Consensus pattern (41 bp):
ATTCAGGCTTCGTGCCTAGCAGGCTTAGTGTCGGTGTATTA
Found at i:15679259 original size:38 final size:39
Alignment explanation
Indices: 15679073--15679296 Score: 166
Period size: 41 Copynumber: 5.7 Consensus size: 39
15679063 ATTAAAATGG
** * *
15679073 GGTGTT-ATTCAGGCTTTGTGCATAGTAGGCTTAGTGTC
1 GGTGTTAATTCAGGCTTAATGCCTAGCAGGCTTAGTGTC
* *
15679111 GGTGTATTAATTCAGGCTTCATGCCTAGCAAGCTTAGTGTC
1 GGTG--TTAATTCAGGCTTAATGCCTAGCAGGCTTAGTGTC
* * ** * *
15679152 GGTGTATTGATTCAAGCTTCGTGCTTAGCAAGCTTAGTGTC
1 GGTG--TTAATTCAGGCTTAATGCCTAGCAGGCTTAGTGTC
** ** * *
15679193 GGTGTATAGATTCAAACTTTGTGTCTAGCAGGCTTAGTGCC
1 GGTGT-TA-ATTCAGGCTTAATGCCTAGCAGGCTTAGTGTC
*
15679234 GGTGTT-ATTCAGGCTTAATGCCTAGCAGGCTTAGTGCC
1 GGTGTTAATTCAGGCTTAATGCCTAGCAGGCTTAGTGTC
** * *
15679272 AATGTT-ACTCAGGCTTAAAGCCTAG
1 GGTGTTAATTCAGGCTTAATGCCTAG
15679297 TAAGCTTGAT
Statistics
Matches: 156, Mismatches: 25, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
38 52 0.33
39 1 0.01
40 4 0.03
41 99 0.63
ACGTcount: A:0.21, C:0.18, G:0.27, T:0.34
Consensus pattern (39 bp):
GGTGTTAATTCAGGCTTAATGCCTAGCAGGCTTAGTGTC
Found at i:15682032 original size:18 final size:19
Alignment explanation
Indices: 15681990--15682033 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
15681980 TACGAGCATG
15681990 AATATGTGAAATATGTGAA
1 AATATGTGAAATATGTGAA
15682009 AA-ATGTGAAA-A-GTGAA
1 AATATGTGAAATATGTGAA
15682025 ACATATGTG
1 A-ATATGTG
15682034 TTAAAACGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 6 0.26
17 2 0.09
18 13 0.57
19 2 0.09
ACGTcount: A:0.48, C:0.02, G:0.23, T:0.27
Consensus pattern (19 bp):
AATATGTGAAATATGTGAA
Found at i:15683076 original size:10 final size:10
Alignment explanation
Indices: 15683061--15683091 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
15683051 TGGGGCAACA
15683061 TTAACTACAT
1 TTAACTACAT
15683071 TTAACTACA-
1 TTAACTACAT
15683080 TTAACTACAT
1 TTAACTACAT
15683090 TT
1 TT
15683092 CTTAGGGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.42
Consensus pattern (10 bp):
TTAACTACAT
Found at i:15683083 original size:9 final size:9
Alignment explanation
Indices: 15683058--15683090 Score: 57
Period size: 9 Copynumber: 3.6 Consensus size: 9
15683048 GAATGGGGCA
15683058 ACATTAACT
1 ACATTAACT
15683067 ACATTTAACT
1 ACA-TTAACT
15683077 ACATTAACT
1 ACATTAACT
15683086 ACATT
1 ACATT
15683091 TCTTAGGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 14 0.61
10 9 0.39
ACGTcount: A:0.42, C:0.21, G:0.00, T:0.36
Consensus pattern (9 bp):
ACATTAACT
Found at i:15685161 original size:22 final size:22
Alignment explanation
Indices: 15685136--15685178 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
15685126 AACTTAATTC
*
15685136 ACATTTATTGATTGAATGTAAT
1 ACATTTATTAATTGAATGTAAT
15685158 ACATTTATTAATTGAATGTAA
1 ACATTTATTAATTGAATGTAA
15685179 AGGAGCTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.44
Consensus pattern (22 bp):
ACATTTATTAATTGAATGTAAT
Found at i:15687341 original size:17 final size:16
Alignment explanation
Indices: 15687316--15687349 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
15687306 ATTACAATGG
15687316 CATAGAAATAATGTAAA
1 CATAGAAATAATG-AAA
*
15687333 CATATAAATAATGAAA
1 CATAGAAATAATGAAA
15687349 C
1 C
15687350 TAACATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.59, C:0.09, G:0.09, T:0.24
Consensus pattern (16 bp):
CATAGAAATAATGAAA
Found at i:15687760 original size:25 final size:23
Alignment explanation
Indices: 15687723--15687794 Score: 80
Period size: 21 Copynumber: 3.1 Consensus size: 23
15687713 ATACAAGAAT
15687723 AAATATATATACATATATAGATTATAA
1 AAATA-AT-TACATATATA-ATTA-AA
15687750 AAATAATTACATATATAA--AAA
1 AAATAATTACATATATAATTAAA
15687771 AAATAATTACAT-TAT-ATTAAA
1 AAATAATTACATATATAATTAAA
15687792 AAA
1 AAA
15687795 ATAAATATGC
Statistics
Matches: 43, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
19 1 0.02
20 3 0.07
21 20 0.47
22 1 0.02
24 1 0.02
25 10 0.23
26 2 0.05
27 5 0.12
ACGTcount: A:0.61, C:0.04, G:0.01, T:0.33
Consensus pattern (23 bp):
AAATAATTACATATATAATTAAA
Found at i:15687774 original size:21 final size:22
Alignment explanation
Indices: 15687748--15687798 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
15687738 TATAGATTAT
15687748 AAAAATAATTACA-TATATAAA
1 AAAAATAATTACATTATATAAA
*
15687769 AAAAATAATTACATTATATTAA
1 AAAAATAATTACATTATATAAA
15687791 AAAAATAA
1 AAAAATAA
15687799 ATATGCGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 13 0.46
22 15 0.54
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (22 bp):
AAAAATAATTACATTATATAAA
Found at i:15687902 original size:23 final size:23
Alignment explanation
Indices: 15687857--15687902 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
15687847 TACATAGATT
**
15687857 TAAAAAATAATTAAATATGAAAA
1 TAAAAAATAATTAAATAAAAAAA
15687880 TAAAAAATTAATT-AATAAAAAAA
1 TAAAAAA-TAATTAAATAAAAAAA
15687903 AGGAAAACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (23 bp):
TAAAAAATAATTAAATAAAAAAA
Found at i:15691723 original size:18 final size:18
Alignment explanation
Indices: 15691695--15691738 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
15691685 AGTAAAATTT
15691695 ATATGAAAATCCCT-GAAGG
1 ATAT-AAAAT-CCTAGAAGG
*
15691714 ATTTAAAATCCTAGAAGG
1 ATATAAAATCCTAGAAGG
15691732 ATATAAA
1 ATATAAA
15691739 GTTTCTCGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 3 0.14
18 16 0.73
19 3 0.14
ACGTcount: A:0.48, C:0.11, G:0.16, T:0.25
Consensus pattern (18 bp):
ATATAAAATCCTAGAAGG
Found at i:15700137 original size:29 final size:27
Alignment explanation
Indices: 15700100--15700172 Score: 76
Period size: 29 Copynumber: 2.6 Consensus size: 27
15700090 TTAATTAATT
*
15700100 TTTTAAAATTTTAAAAT-ATAAAAAATA
1 TTTTAAAA-TTAAAAATCATAAAAAATA
*
15700127 TATTTAGAAATTAAAAATCATAAAAATTA
1 T-TTTA-AAATTAAAAATCATAAAAAATA
15700156 TTTTAAAAGTATAAAAA
1 TTTTAAAA-T-TAAAAA
15700173 ATTAATTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
27 4 0.10
28 16 0.41
29 19 0.49
ACGTcount: A:0.59, C:0.01, G:0.03, T:0.37
Consensus pattern (27 bp):
TTTTAAAATTAAAAATCATAAAAAATA
Found at i:15700171 original size:28 final size:27
Alignment explanation
Indices: 15700096--15700171 Score: 84
Period size: 28 Copynumber: 2.8 Consensus size: 27
15700086 ATATTTAATT
*
15700096 AATT-TTTTAAAATTTTAAAATATAAA
1 AATTATTTTAAAATTATAAAATATAAA
*
15700122 AAATATATTTAGAAATTA-AAAATCATAAA
1 AATTAT-TTTA-AAATTATAAAAT-ATAAA
*
15700151 AATTATTTTAAAAGTATAAAA
1 AATTATTTTAAAATTATAAAA
15700172 AATTAATTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
26 3 0.07
27 6 0.15
28 17 0.41
29 15 0.37
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (27 bp):
AATTATTTTAAAATTATAAAATATAAA
Found at i:15700181 original size:20 final size:20
Alignment explanation
Indices: 15700135--15700182 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
15700125 TATATTTAGA
15700135 AATTAAAAATCATAAAAATT
1 AATTAAAAATCATAAAAATT
* *
15700155 ATTTTAAAAGT-ATAAAAAATT
1 A-ATTAAAAATCAT-AAAAATT
15700176 AATTAAA
1 AATTAAA
15700183 CCATATATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (20 bp):
AATTAAAAATCATAAAAATT
Found at i:15718927 original size:4 final size:4
Alignment explanation
Indices: 15718918--15718942 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
15718908 TTCCAAACCA
15718918 TCAT TCAT TCAT TCAT TCAT TCAT T
1 TCAT TCAT TCAT TCAT TCAT TCAT T
15718943 ATCATATTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (4 bp):
TCAT
Found at i:15719685 original size:34 final size:34
Alignment explanation
Indices: 15719620--15719686 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 34
15719610 GTTCAGATTC
* *
15719620 AAAAAAAAAGAGAGAAAAATCAAAATAAAAAACG
1 AAAAAAAAAGAGAAAAAAATCAAAAGAAAAAACG
15719654 AAAAAAGAAA-AGAAAAAAATCAAAAGCAAAAAA
1 AAAAAA-AAAGAGAAAAAAATCAAAAG-AAAAAA
15719687 GAGAAATCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 20 0.69
35 9 0.31
ACGTcount: A:0.79, C:0.06, G:0.10, T:0.04
Consensus pattern (34 bp):
AAAAAAAAAGAGAAAAAAATCAAAAGAAAAAACG
Found at i:15720119 original size:15 final size:15
Alignment explanation
Indices: 15720101--15720145 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
15720091 AATGAAAAAG
15720101 AAAAAGAGAAAATGA
1 AAAAAGAGAAAATGA
*
15720116 AAAATGAG--AATGA
1 AAAAAGAGAAAATGA
15720129 AAAAATGA-AAAATGA
1 AAAAA-GAGAAAATGA
15720144 AA
1 AA
15720146 GAGTAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
13 9 0.36
14 2 0.08
15 14 0.56
ACGTcount: A:0.71, C:0.00, G:0.18, T:0.11
Consensus pattern (15 bp):
AAAAAGAGAAAATGA
Found at i:15720119 original size:21 final size:21
Alignment explanation
Indices: 15720087--15720155 Score: 86
Period size: 21 Copynumber: 3.3 Consensus size: 21
15720077 TGGATTTCAA
15720087 AAAAAATGAAAAA-GAAAAAG
1 AAAAAATGAAAAATGAAAAAG
* * *
15720107 AGAAAATGAAAAATGAGAATG
1 AAAAAATGAAAAATGAAAAAG
*
15720128 AAAAAATGAAAAATGAAAGAG
1 AAAAAATGAAAAATGAAAAAG
*
15720149 TAAAAAT
1 AAAAAAT
15720156 AGAGAGGCTA
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
20 12 0.30
21 28 0.70
ACGTcount: A:0.71, C:0.00, G:0.17, T:0.12
Consensus pattern (21 bp):
AAAAAATGAAAAATGAAAAAG
Found at i:15720139 original size:7 final size:7
Alignment explanation
Indices: 15720088--15720145 Score: 68
Period size: 7 Copynumber: 8.4 Consensus size: 7
15720078 GGATTTCAAA
15720088 AAAAATG
1 AAAAATG
15720095 AAAAA-G
1 AAAAATG
15720101 AAAAA-G
1 AAAAATG
15720107 AGAAAATG
1 A-AAAATG
15720115 AAAAATG
1 AAAAATG
*
15720122 -AGAATG
1 AAAAATG
15720128 AAAAAATG
1 -AAAAATG
15720136 AAAAATG
1 AAAAATG
15720143 AAA
1 AAA
15720146 GAGTAAAAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
6 13 0.29
7 25 0.56
8 7 0.16
ACGTcount: A:0.72, C:0.00, G:0.17, T:0.10
Consensus pattern (7 bp):
AAAAATG
Found at i:15721489 original size:43 final size:43
Alignment explanation
Indices: 15721441--15721575 Score: 107
Period size: 43 Copynumber: 3.1 Consensus size: 43
15721431 AAGCAGATCT
*
15721441 TTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCC
1 TTGCCTTCCTGCATTAACAGTGAAGCAGATCGAAAACAAAGCC
* * * * * ** * *
15721484 TTGCC-TCCAT-CGGTT-GCAGTGGAGCTGGTTAAAGAAGCAGA-TC
1 TTGCCTTCC-TGC-ATTAACAGTGAAGCAGATCGAA-AA-CAAAGCC
*
15721527 TTGCCTTCCTGCTTTAACAGTGAAGCAGATCGAAAACAAAGCC
1 TTGCCTTCCTGCATTAACAGTGAAGCAGATCGAAAACAAAGCC
15721570 TTGCCT
1 TTGCCT
15721576 CCATCGGTTG
Statistics
Matches: 65, Mismatches: 19, Indels: 16
0.65 0.19 0.16
Matches are distributed among these distances:
42 18 0.28
43 28 0.43
44 19 0.29
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (43 bp):
TTGCCTTCCTGCATTAACAGTGAAGCAGATCGAAAACAAAGCC
Found at i:15721574 original size:86 final size:86
Alignment explanation
Indices: 15721380--15721795 Score: 681
Period size: 86 Copynumber: 4.8 Consensus size: 86
15721370 AGACCCGTGA
*
15721380 AGATCGAAAACAAAGACTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATC-TTGC
15721445 CTTCCTGCATTAACAGCGAAGC
65 CTTCCTGCATTAACAGCGAAGC
15721467 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTGCC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTGCC
* *
15721532 TTCCTGCTTTAACAGTGAAGC
66 TTCCTGCATTAACAGCGAAGC
* *
15721553 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTAGTTAAAGAAGCAGATCTTGTC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTGCC
*
15721618 TTTCTGCATTAACAGCGAAGC
66 TTCCTGCATTAACAGCGAAGC
* *
15721639 AGATCGAAAACAAAACCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGA-AGCAGATCTTGC
* * *
15721704 CTTCCTGCATTGATAGCGAAAC
65 CTTCCTGCATTAACAGCGAAGC
* *
15721726 AGATCG-AAACAAAGCCTTGCCTCTATCGGTTACAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGA-AGCAGATCTTGC
15721790 CTTCCT
65 CTTCCT
15721796 AAGCACTAGC
Statistics
Matches: 308, Mismatches: 20, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
86 214 0.69
87 94 0.31
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.25
Consensus pattern (86 bp):
AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAAGCAGATCTTGCC
TTCCTGCATTAACAGCGAAGC
Found at i:15722178 original size:88 final size:86
Alignment explanation
Indices: 15721915--15722207 Score: 237
Period size: 88 Copynumber: 3.4 Consensus size: 86
15721905 AAATTACAAG
15721915 TCTTATCTCCCT-AAGT-AGTAGTGGAGCAGA-CAGAAGAAATC-AATCCTATCTCCCTGAAGTT
1 TCTTATCTCCCTGAAGTCAGTAGTGGAGCAGATC----G-AATCGAATCCTATCTCCCTGAAGTT
* * *
15721976 GCAGTGGAGTGGATTAAAATAATAGA
61 GCAGTGGAGCGAATTAAAGTAATAGA
* ** * *
15722002 TCTTATCTCCCT-AAG-CAGTAGTGGAGCAGATCGCATCGGGTCTTATCTCCCTGAAGTTGCAGC
1 TCTTATCTCCCTGAAGTCAGTAGTGGAGCAGATCGAATCGAATCCTATCTCCCTGAAGTTGCAGT
* * * **
15722065 GGAGC-AGACT-GAGAAAGCGA
66 GGAGCGA-ATTAAAGTAATAGA
* * *
15722085 GTCTTATCCCCCTGAAGTCA-TAGTGGAGCAGATTGAATTCGATAATCCTATCTCCCTGAGGTTG
1 -TCTTATCTCCCTGAAGTCAGTAGTGGAGCAGATCGAA-TCG--AATCCTATCTCCCTGAAGTTG
*
15722149 TAGTGGAGCGAATTAAAGTAATAGA
62 CAGTGGAGCGAATTAAAGTAATAGA
* * * *
15722174 TCTTATCTCTCTGAAGT-TGCAGTAGAGCAGATCG
1 TCTTATCTCCCTGAAGTCAGTAGTGGAGCAGATCG
15722208 CATCAAGTCT
Statistics
Matches: 160, Mismatches: 33, Indels: 25
0.73 0.15 0.11
Matches are distributed among these distances:
83 8 0.05
84 39 0.24
85 18 0.11
86 5 0.03
87 29 0.18
88 54 0.34
89 7 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (86 bp):
TCTTATCTCCCTGAAGTCAGTAGTGGAGCAGATCGAATCGAATCCTATCTCCCTGAAGTTGCAGT
GGAGCGAATTAAAGTAATAGA
Found at i:15723129 original size:23 final size:25
Alignment explanation
Indices: 15723086--15723131 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
15723076 AAAAAGGTTT
15723086 TTCTTTTTTCCTTTTCTCGATTGGG
1 TTCTTTTTTCCTTTTCTCGATTGGG
15723111 TTCTTTTTT-CTTTTC-CGATTG
1 TTCTTTTTTCCTTTTCTCGATTG
15723132 CTTTTATCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 6 0.29
24 6 0.29
25 9 0.43
ACGTcount: A:0.04, C:0.20, G:0.13, T:0.63
Consensus pattern (25 bp):
TTCTTTTTTCCTTTTCTCGATTGGG
Found at i:15734769 original size:50 final size:50
Alignment explanation
Indices: 15734667--15734773 Score: 126
Period size: 50 Copynumber: 2.1 Consensus size: 50
15734657 GTGTGTGTCT
*
15734667 AGGCCGTGTAACTCACGGTTTTGGATTTAGGATCACACGGGCGTACGTCC
1 AGGCCGTGTAACTCACGGTTTTGGATTTAGGATCACACGGGCGTACGCCC
* * * * * **
15734717 AGGCTGTGTAACTTACTGTTTTGGGTTTATGG-TCACATGGGCGTGTGCCC
1 AGGCCGTGTAACTCACGGTTTTGGATTTA-GGATCACACGGGCGTACGCCC
15734767 AGGCCGT
1 AGGCCGT
15734774 ATGAGGGGTT
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
50 45 0.96
51 2 0.04
ACGTcount: A:0.17, C:0.21, G:0.32, T:0.30
Consensus pattern (50 bp):
AGGCCGTGTAACTCACGGTTTTGGATTTAGGATCACACGGGCGTACGCCC
Found at i:15735717 original size:27 final size:28
Alignment explanation
Indices: 15735687--15735748 Score: 72
Period size: 32 Copynumber: 2.1 Consensus size: 28
15735677 AGAAGTTGGA
15735687 TTTTATGTTGATTTAAA-TAATTATAAGT
1 TTTTATGTTGATTTAAATTAATTA-AAGT
15735715 TTTTCGATGGTTGAATTTAAATTAATTAAAGT
1 TTTT--AT-GTTG-ATTTAAATTAATTAAAGT
15735747 TT
1 TT
15735749 AGGTTGTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
28 4 0.14
30 2 0.07
31 4 0.14
32 13 0.45
33 6 0.21
ACGTcount: A:0.34, C:0.02, G:0.13, T:0.52
Consensus pattern (28 bp):
TTTTATGTTGATTTAAATTAATTAAAGT
Found at i:15741023 original size:27 final size:28
Alignment explanation
Indices: 15740986--15741039 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
15740976 AATACTATTT
15740986 CAAAATAG-AAAAACTATTTTGTCTTTC
1 CAAAATAGAAAAAACTATTTTGTCTTTC
*
15741013 CAAAATGGAAAAAACTATTTTGTCTTT
1 CAAAATAGAAAAAACTATTTTGTCTTT
15741040 TCATGTCCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 7 0.28
28 18 0.72
ACGTcount: A:0.41, C:0.13, G:0.09, T:0.37
Consensus pattern (28 bp):
CAAAATAGAAAAAACTATTTTGTCTTTC
Found at i:15746688 original size:21 final size:20
Alignment explanation
Indices: 15746664--15746702 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
15746654 CCTGATATGG
15746664 TAAAATAAGGAAATAAAGTGA
1 TAAAA-AAGGAAATAAAGTGA
* *
15746685 TAAAAAGGGAAATTAAGT
1 TAAAAAAGGAAATAAAGT
15746703 TATGTCAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.59, C:0.00, G:0.21, T:0.21
Consensus pattern (20 bp):
TAAAAAAGGAAATAAAGTGA
Found at i:15747583 original size:24 final size:24
Alignment explanation
Indices: 15747543--15747589 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
15747533 AGGGGGAAAT
*
15747543 AAGAGAAAGTGATGGAAAATGTTG
1 AAGAGAAAGTGAAGGAAAATGTTG
*
15747567 AAGAGAAAG-GAAAGGAAAGTGTT
1 AAGAGAAAGTG-AAGGAAAATGTT
15747590 ATAAATTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.49, C:0.00, G:0.34, T:0.17
Consensus pattern (24 bp):
AAGAGAAAGTGAAGGAAAATGTTG
Found at i:15750495 original size:6 final size:6
Alignment explanation
Indices: 15750486--15750557 Score: 63
Period size: 6 Copynumber: 11.5 Consensus size: 6
15750476 TTAGTTTTTG
* * * *
15750486 TTTATT TTTATT TTTATT TTTATT TTTATT TGTACT ATTATT TTCATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
* *
15750534 GTTAGTT GTTTTTAT TTTATT TTT
1 TTTA-TT -TTTAT-T TTTATT TTT
15750558 GAGACTTATA
Statistics
Matches: 51, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
6 41 0.80
7 7 0.14
8 3 0.06
ACGTcount: A:0.17, C:0.03, G:0.06, T:0.75
Consensus pattern (6 bp):
TTTATT
Found at i:15754194 original size:18 final size:18
Alignment explanation
Indices: 15754171--15754212 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
15754161 CTTAATTTCA
15754171 ATGATTGCTTTGCAAAAG
1 ATGATTGCTTTGCAAAAG
15754189 ATGATTGCTTTGCAAAAG
1 ATGATTGCTTTGCAAAAG
*
15754207 TTGATT
1 ATGATT
15754213 CCCCAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (18 bp):
ATGATTGCTTTGCAAAAG
Found at i:15755041 original size:13 final size:14
Alignment explanation
Indices: 15755011--15755049 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
15755001 CCATTTCCAA
15755011 TAAAAAAACACAAGT
1 TAAAAAAA-ACAAGT
15755026 TAAAAAAAACAA-T
1 TAAAAAAAACAAGT
*
15755039 TAAGAAAAACA
1 TAAAAAAAACA
15755050 TTTTCTTGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 11 0.48
14 4 0.17
15 8 0.35
ACGTcount: A:0.72, C:0.10, G:0.05, T:0.13
Consensus pattern (14 bp):
TAAAAAAAACAAGT
Found at i:15755369 original size:85 final size:85
Alignment explanation
Indices: 15755220--15755474 Score: 305
Period size: 85 Copynumber: 3.0 Consensus size: 85
15755210 ACCACTGATA
* * * * **
15755220 ATTTGCAGTTATTGCCACTTGTTGTAGGTGCATACCATATTTGTAGAACAAACGAACTACCACTT
1 ATTTGCAGTTATTGCCACTTGTTGTGGGTGCACAACATATTTGAAGATTAAACGAACTACCACTT
15755285 GGTTCGTGATCGAAC-AGCAT
66 GGTTCGTGATCGAACTA-CAT
* * * * * **
15755305 ATTTGCAGTTATTGTCACTTATTGTGGGTGCACAACATATTTAAAGATTATATGAACTGTCACTT
1 ATTTGCAGTTATTGCCACTTGTTGTGGGTGCACAACATATTTGAAGATTAAACGAACTACCACTT
* *
15755370 GGTTCATGATTGAACTACAT
66 GGTTCGTGATCGAACTACAT
* * * *
15755390 ATTTGCAATTACTGCCACTTGTTGTGGGTGCACAACATATTTGCATATTAAACGAACTACCACTT
1 ATTTGCAGTTATTGCCACTTGTTGTGGGTGCACAACATATTTGAAGATTAAACGAACTACCACTT
* *
15755455 GGTTCGTGATCAAACCACAT
66 GGTTCGTGATCGAACTACAT
15755475 TGTTTGCATA
Statistics
Matches: 139, Mismatches: 30, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
85 138 0.99
86 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (85 bp):
ATTTGCAGTTATTGCCACTTGTTGTGGGTGCACAACATATTTGAAGATTAAACGAACTACCACTT
GGTTCGTGATCGAACTACAT
Found at i:15756941 original size:50 final size:50
Alignment explanation
Indices: 15756861--15757103 Score: 333
Period size: 50 Copynumber: 4.8 Consensus size: 50
15756851 ATTTGGGTAA
* * * *
15756861 AGAGGTCTCACGTAAGACCATGTCTAGGACATGGCGTTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
*
15756911 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
*
15756961 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACTGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * * * * *
15757011 AGAGGTCCCCCGTAAGACCATATCTAGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** *
15757061 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
15757104 TGTTATTATC
Statistics
Matches: 169, Mismatches: 23, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
50 137 0.81
51 32 0.19
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:15761913 original size:25 final size:25
Alignment explanation
Indices: 15761843--15761929 Score: 104
Period size: 25 Copynumber: 3.5 Consensus size: 25
15761833 ACTTTAGCAC
* *
15761843 GCTCTCTGATTATTAACACGTTGGT
1 GCTCTCTGATTATTAGCACGTTGAT
*
15761868 GTTCTCTGATTATTAGCACGTTGAT
1 GCTCTCTGATTATTAGCACGTTGAT
* * *
15761893 GCTCTCTGATTACTAGTACG-TCAGT
1 GCTCTCTGATTATTAGCACGTTGA-T
15761918 GCTCTCTGATTA
1 GCTCTCTGATTA
15761930 GCACATTTGT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
24 2 0.04
25 52 0.96
ACGTcount: A:0.20, C:0.21, G:0.20, T:0.40
Consensus pattern (25 bp):
GCTCTCTGATTATTAGCACGTTGAT
Found at i:15761944 original size:22 final size:22
Alignment explanation
Indices: 15761913--15761970 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 22
15761903 TACTAGTACG
15761913 TCAGTGCTCTCTG-ATTAGCACAT
1 TCAGTGCTCTCTGTA-TAGCAC-T
*
15761936 T-TGTGCTCTCTGTATAGCACT
1 TCAGTGCTCTCTGTATAGCACT
15761957 TCAGTGCTCTCTGT
1 TCAGTGCTCTCTGT
15761971 TCATTAGTGC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
21 2 0.06
22 27 0.87
23 2 0.06
ACGTcount: A:0.16, C:0.26, G:0.19, T:0.40
Consensus pattern (22 bp):
TCAGTGCTCTCTGTATAGCACT
Found at i:15761977 original size:47 final size:48
Alignment explanation
Indices: 15761843--15761977 Score: 118
Period size: 50 Copynumber: 2.8 Consensus size: 48
15761833 ACTTTAGCAC
* * ** *
15761843 GCTCTCTGATTATTAACACGTTGGTGTTCTCTGATTATTAGCACGTTGAT
1 GCTCTCTGA-TACTAGCACGTCAGTGCTCTCTG-TTATTAGCACGTTGAT
* *
15761893 GCTCTCTGATTACTAGTACGTCAGTGCTCTCTG--ATTAGCACATTTG-T
1 GCTCTCTGA-TACTAGCACGTCAGTGCTCTCTGTTATTAGCAC-GTTGAT
*
15761940 GCTCTCTG-TA-TAGCACTTCAGTGCTCTCTGTTCATTAG
1 GCTCTCTGATACTAGCACGTCAGTGCTCTCTGTT-ATTAG
15761978 TGCATAATAA
Statistics
Matches: 72, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
44 18 0.25
45 2 0.03
47 22 0.31
48 3 0.04
50 27 0.38
ACGTcount: A:0.19, C:0.22, G:0.19, T:0.40
Consensus pattern (48 bp):
GCTCTCTGATACTAGCACGTCAGTGCTCTCTGTTATTAGCACGTTGAT
Found at i:15762826 original size:54 final size:54
Alignment explanation
Indices: 15762711--15762847 Score: 132
Period size: 54 Copynumber: 2.5 Consensus size: 54
15762701 GCACACTCTA
* * * * ***
15762711 AAAGAATTGCCTCTGTGGTAAGCTCTGAATGAACAACCTTTGTGGTGCACTCGG
1 AAAGAACTGCCTCTGTGGCAAACTCTGAATGAACAACCTCTGTGGAAAACTCGG
* ** *
15762765 AAAGAACTGCCTTTGTGGCAAACTCTGAATGAACTGCCTCTGTGGAAAACTCTG
1 AAAGAACTGCCTCTGTGGCAAACTCTGAATGAACAACCTCTGTGGAAAACTCGG
* * *
15762819 AATGAACTACCTCGGTGGCATAA-TCTGAA
1 AAAGAACTGCCTCTGTGGCA-AACTCTGAA
15762848 AGGATTTCCT
Statistics
Matches: 67, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
54 65 0.97
55 2 0.03
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26
Consensus pattern (54 bp):
AAAGAACTGCCTCTGTGGCAAACTCTGAATGAACAACCTCTGTGGAAAACTCGG
Found at i:15762831 original size:27 final size:27
Alignment explanation
Indices: 15762720--15762836 Score: 117
Period size: 27 Copynumber: 4.3 Consensus size: 27
15762710 AAAAGAATTG
* *
15762720 CCTCTGTGGTAAGCTCTGAATGAACAA
1 CCTCTGTGGTAAACTCTGAATGAACTA
* ** * * *
15762747 CCTTTGTGGTGCACTCGGAAAGAACTG
1 CCTCTGTGGTAAACTCTGAATGAACTA
* * *
15762774 CCTTTGTGGCAAACTCTGAATGAACTG
1 CCTCTGTGGTAAACTCTGAATGAACTA
*
15762801 CCTCTGTGGAAAACTCTGAATGAACTA
1 CCTCTGTGGTAAACTCTGAATGAACTA
*
15762828 CCTCGGTGG
1 CCTCTGTGG
15762837 CATAATCTGA
Statistics
Matches: 73, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (27 bp):
CCTCTGTGGTAAACTCTGAATGAACTA
Found at i:15762845 original size:27 final size:27
Alignment explanation
Indices: 15762779--15762847 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
15762769 AACTGCCTTT
* *
15762779 GTGGCAAACTCTGAATGAACTGCCTCT
1 GTGGCAAACTCTGAATGAACTACCTCG
*
15762806 GTGGAAAACTCTGAATGAACTACCTCG
1 GTGGCAAACTCTGAATGAACTACCTCG
15762833 GTGGCATAA-TCTGAA
1 GTGGCA-AACTCTGAA
15762848 AGGATTTCCT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 35 0.95
28 2 0.05
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (27 bp):
GTGGCAAACTCTGAATGAACTACCTCG
Found at i:15762849 original size:81 final size:81
Alignment explanation
Indices: 15762692--15762864 Score: 184
Period size: 81 Copynumber: 2.1 Consensus size: 81
15762682 AGAATGAATA
* * * * * ** *
15762692 GCCTTTATGGCACACTCTAAAAGAATTGCCTCTGTGGTAAGCTCTGAATGAACAACCTTTGTGGT
1 GCCTTTGTGGCAAACTCTAAAAGAACTGCCTCTGTGGAAAACTCTGAATGAACAACCTCGGTGGC
* *
15762757 GCACTCGGAAAGAACT
66 ACAATCGGAAAGAACT
* * *
15762773 GCCTTTGTGGCAAACTCTGAATGAACTGCCTCTGTGGAAAACTCTGAATGAACTACCTCGGTGGC
1 GCCTTTGTGGCAAACTCTAAAAGAACTGCCTCTGTGGAAAACTCTGAATGAACAACCTCGGTGGC
* * * *
15762838 ATAATCTGAAAGGATT
66 ACAATCGGAAAGAACT
*
15762854 TCCTTTGTGGC
1 GCCTTTGTGGC
15762865 GTACATTAAT
Statistics
Matches: 74, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
81 74 1.00
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (81 bp):
GCCTTTGTGGCAAACTCTAAAAGAACTGCCTCTGTGGAAAACTCTGAATGAACAACCTCGGTGGC
ACAATCGGAAAGAACT
Found at i:15777132 original size:23 final size:24
Alignment explanation
Indices: 15777102--15777146 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
15777092 AACGTTAACA
15777102 ATTAAAAA-AAAAAGTAATTCATC
1 ATTAAAAAGAAAAAGTAATTCATC
**
15777125 ATTAAAAAGAAACCGTAATTCA
1 ATTAAAAAGAAAAAGTAATTCA
15777147 AACAGAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.58, C:0.11, G:0.07, T:0.24
Consensus pattern (24 bp):
ATTAAAAAGAAAAAGTAATTCATC
Found at i:15779406 original size:28 final size:27
Alignment explanation
Indices: 15779348--15779403 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
15779338 ACAAGTTAAA
15779348 TTGAAAATTAAAAGAATTAATAAAAAT
1 TTGAAAATTAAAAGAATTAATAAAAAT
*
15779375 TTGAAAATATAAAA-AATTAATTAAAAT
1 TTGAAAAT-TAAAAGAATTAATAAAAAT
15779402 TT
1 TT
15779404 TGATTTTTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 22 0.81
28 5 0.19
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (27 bp):
TTGAAAATTAAAAGAATTAATAAAAAT
Found at i:15780284 original size:29 final size:30
Alignment explanation
Indices: 15780252--15780317 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 30
15780242 AAAATTCCAG
*
15780252 ATATAAAATTGGACA-AAATCAAAGTTCAT
1 ATATAAAATTGCACATAAATCAAAGTTCAT
* * *
15780281 ATATGATATTGCCCATTAAATCAAAGTTCAT
1 ATATAAAATTGCACA-TAAATCAAAGTTCAT
15780312 ATATAA
1 ATATAA
15780318 TTTTAATATT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 11 0.37
31 19 0.63
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.32
Consensus pattern (30 bp):
ATATAAAATTGCACATAAATCAAAGTTCAT
Found at i:15780345 original size:18 final size:18
Alignment explanation
Indices: 15780318--15780375 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
15780308 TCATATATAA
15780318 TTTT-AATATTTATCTTT
1 TTTTAAATATTTATCTTT
* *
15780335 TTTTAAATATTCAT-TATC
1 TTTTAAATATTTATCT-TT
*
15780353 TTTTAGATATTTTATCTTT
1 TTTTAAATA-TTTATCTTT
15780372 TTTT
1 TTTT
15780376 TCAAAATAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
17 5 0.16
18 17 0.53
19 9 0.28
20 1 0.03
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTAAATATTTATCTTT
Found at i:15780408 original size:37 final size:36
Alignment explanation
Indices: 15780318--15780415 Score: 103
Period size: 38 Copynumber: 2.7 Consensus size: 36
15780308 TCATATATAA
* *
15780318 TTTTAATATTTATC-TTTTTTTAAATATTCATTATC
1 TTTTAATATTTTTCTTTTTTTTAAATAGTCATTATC
15780353 TTTTAGATATTTTATCTTTTTTTTCAAAATAAGT-ATTAT-
1 TTTTA-ATATTTT-TCTTTTTTTT--AAAT-AGTCATTATC
*
15780392 TTTTAATATTTTTCTTTTTCTTAA
1 TTTTAATATTTTTCTTTTTTTTAA
15780416 TTATTATTAA
Statistics
Matches: 54, Mismatches: 3, Indels: 12
0.78 0.04 0.17
Matches are distributed among these distances:
35 7 0.13
36 6 0.11
37 11 0.20
38 14 0.26
39 5 0.09
40 9 0.17
41 2 0.04
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.63
Consensus pattern (36 bp):
TTTTAATATTTTTCTTTTTTTTAAATAGTCATTATC
Found at i:15780910 original size:18 final size:19
Alignment explanation
Indices: 15780873--15780910 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
15780863 TTAAAAATGT
*
15780873 AAATAAAAATATTTTTAAA
1 AAATAAAAATATTGTTAAA
*
15780892 AAATTAAAA-ATTGTTAAA
1 AAATAAAAATATTGTTAAA
15780910 A
1 A
15780911 GAGTATAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (19 bp):
AAATAAAAATATTGTTAAA
Found at i:15782835 original size:11 final size:11
Alignment explanation
Indices: 15782822--15782900 Score: 89
Period size: 11 Copynumber: 7.6 Consensus size: 11
15782812 AAAACAAAAA
15782822 TTTAAAAAGTAT
1 TTTAAAAA-TAT
15782834 TTTAAAAATAT
1 TTTAAAAATAT
15782845 TTT--AAA-A-
1 TTTAAAAATAT
15782852 -TTAAAAA-AT
1 TTTAAAAATAT
**
15782861 TAAAAAAATAT
1 TTTAAAAATAT
15782872 TTTAAAAATAT
1 TTTAAAAATAT
15782883 TTTAAAAATAT
1 TTTAAAAATAT
15782894 TTTAAAA
1 TTTAAAA
15782901 TTAAAAAAAT
Statistics
Matches: 58, Mismatches: 4, Indels: 11
0.79 0.05 0.15
Matches are distributed among these distances:
6 2 0.03
8 5 0.09
9 3 0.05
10 5 0.09
11 35 0.60
12 8 0.14
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (11 bp):
TTTAAAAATAT
Found at i:15782867 original size:38 final size:38
Alignment explanation
Indices: 15782817--15782889 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
15782807 AAATTAAAAC
* *
15782817 AAAAATTTAAAAAGTATTTTAAAAATATTTTAAAATTA
1 AAAAATTAAAAAAATATTTTAAAAATATTTTAAAATTA
15782855 AAAAATTAAAAAAATATTTTAAAAATATTTTAAAA
1 AAAAATTAAAAAAATATTTTAAAAATATTTTAAAA
15782890 ATATTTTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (38 bp):
AAAAATTAAAAAAATATTTTAAAAATATTTTAAAATTA
Found at i:15782886 original size:49 final size:50
Alignment explanation
Indices: 15782805--15782966 Score: 206
Period size: 50 Copynumber: 3.2 Consensus size: 50
15782795 AATATATTTT
*
15782805 AAAAATTAAAACAAA-AATTTAAAAAGTATTTTAAAAATATTTTAAAATT-A
1 AAAAATTAAAA-AAATATTTTAAAAA-TATTTTAAAAATATTTTAAAATTAA
15782855 AAAAATTAAAAAAATATTTTAAAAATATTTTAAAAATATTTTAAAATTAA
1 AAAAATTAAAAAAATATTTTAAAAATATTTTAAAAATATTTTAAAATTAA
* ** *
15782905 AAAAATTAAAAAAAAGTATTTTAAAAGTATTTT-AAAAT-TTAAAAAAATAA
1 AAAAATT-AAAAAAA-TATTTTAAAAATATTTTAAAAATATTTTAAAATTAA
*
15782955 AAAAAATAAAAA
1 AAAAATTAAAAA
15782967 TATTTATTAT
Statistics
Matches: 102, Mismatches: 6, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
49 31 0.30
50 43 0.42
51 12 0.12
52 16 0.16
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.33
Consensus pattern (50 bp):
AAAAATTAAAAAAATATTTTAAAAATATTTTAAAAATATTTTAAAATTAA
Found at i:15782925 original size:41 final size:40
Alignment explanation
Indices: 15782856--15782962 Score: 144
Period size: 41 Copynumber: 2.6 Consensus size: 40
15782846 TTAAAATTAA
***
15782856 AAAATTAAAAAAATATTTTAAAAATATTTTAAAAATATTTT
1 AAAATTAAAAAAAT-TAAAAAAAATATTTTAAAAATATTTT
*
15782897 AAAATTAAAAAAATTAAAAAAAAGTATTTTAAAAGTATTTT
1 AAAATTAAAAAAATTAAAAAAAA-TATTTTAAAAATATTTT
15782938 AAAATTTAAAAAAA-TAAAAAAAATA
1 AAAA-TTAAAAAAATTAAAAAAAATA
15782963 AAAATATTTA
Statistics
Matches: 60, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
40 8 0.13
41 43 0.72
42 9 0.15
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (40 bp):
AAAATTAAAAAAATTAAAAAAAATATTTTAAAAATATTTT
Found at i:15782930 original size:11 final size:11
Alignment explanation
Indices: 15782916--15782941 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
15782906 AAAATTAAAA
15782916 AAAAGTATTTT
1 AAAAGTATTTT
15782927 AAAAGTATTTT
1 AAAAGTATTTT
15782938 AAAA
1 AAAA
15782942 TTTAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (11 bp):
AAAAGTATTTT
Found at i:15789627 original size:43 final size:42
Alignment explanation
Indices: 15789564--15789689 Score: 148
Period size: 43 Copynumber: 2.9 Consensus size: 42
15789554 AGGACTCCGA
*
15789564 TATGTGTTTTTGTGTAAGACCACGTCTGGGACGTCGGCATCGAC
1 TATGTGTTTTCGTGTAAGACCACGTCTGGGACGT-GGCATCG-C
*
15789608 T-TGTGTTTTCGTGTAAGACC-CTGTCTGGGACAGTGGCATCGG
1 TATGTGTTTTCGTGTAAGACCAC-GTCTGGGAC-GTGGCATCGC
* * *
15789650 TATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 TATGTGTTTTCGTGTAAGACCACGTCTGGGACG-TGGCAT
15789690 TTTACTAGCT
Statistics
Matches: 72, Mismatches: 5, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
42 3 0.04
43 65 0.90
44 4 0.06
ACGTcount: A:0.19, C:0.19, G:0.30, T:0.32
Consensus pattern (42 bp):
TATGTGTTTTCGTGTAAGACCACGTCTGGGACGTGGCATCGC
Found at i:15790367 original size:15 final size:15
Alignment explanation
Indices: 15790335--15790383 Score: 55
Period size: 15 Copynumber: 3.2 Consensus size: 15
15790325 TACTTTAATC
15790335 ATGGATTAGTATTT-T
1 ATGG-TTAGTATTTAT
15790350 ATGGTTAGTATTTAT
1 ATGGTTAGTATTTAT
* *
15790365 ATGGTAATGTATATAT
1 ATGGTTA-GTATTTAT
15790381 ATG
1 ATG
15790384 TGCATGGTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
14 9 0.30
15 11 0.37
16 10 0.33
ACGTcount: A:0.31, C:0.00, G:0.20, T:0.49
Consensus pattern (15 bp):
ATGGTTAGTATTTAT
Done.