Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 55 of 221
Found at i:15790699 original size:24 final size:24
Alignment explanation
Indices: 15790625--15790781 Score: 108
Period size: 24 Copynumber: 6.7 Consensus size: 24
15790615 ATGAATGTAT
* *
15790625 ATGCTGTCAAATTTTGATGTACAA
1 ATGCTGTCAAATTTTGATATATAA
* * * * * *
15790649 AAGCAGTCCAATTAT-ATATGTAT
1 ATGCTGTCAAATTTTGATATATAA
*
15790672 ATGCTGTCAAATTTTGATATACAA
1 ATGCTGTCAAATTTTGATATATAA
* ** * * *
15790696 ATGCAGTCCGATTAT-ATATGTAT
1 ATGCTGTCAAATTTTGATATATAA
*
15790719 ATGCTGTCAAATTTTGATGTATAA
1 ATGCTGTCAAATTTTGATATATAA
*
15790743 ATGCAGTCCAAATTTTG-TATAT--
1 ATGCTGT-CAAATTTTGATATATAA
15790765 ATGCTGTCCAAATTTTG
1 ATGCTGT-CAAATTTTG
15790782 GTGTGAAAAT
Statistics
Matches: 98, Mismatches: 32, Indels: 8
0.71 0.23 0.06
Matches are distributed among these distances:
22 16 0.16
23 31 0.32
24 42 0.43
25 9 0.09
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39
Consensus pattern (24 bp):
ATGCTGTCAAATTTTGATATATAA
Found at i:15790722 original size:23 final size:23
Alignment explanation
Indices: 15790651--15790753 Score: 75
Period size: 23 Copynumber: 4.4 Consensus size: 23
15790641 ATGTACAAAA
15790651 GCAGTCCAATTATATATGTATAT
1 GCAGTCCAATTATATATGTATAT
* * * ** *
15790674 GCTGTCAAATTTTGATATACAAAT
1 GCAGTCCAATTAT-ATATGTATAT
*
15790698 GCAGTCCGATTATATATGTATAT
1 GCAGTCCAATTATATATGTATAT
* *
15790721 GCTGTCAAATT-T-TGATGTATAAAT
1 GCAGTCCAATTATAT-ATGTAT--AT
15790745 GCAGTCCAA
1 GCAGTCCAA
15790754 ATTTTGTATA
Statistics
Matches: 58, Mismatches: 18, Indels: 7
0.70 0.22 0.08
Matches are distributed among these distances:
21 1 0.02
22 7 0.12
23 25 0.43
24 25 0.43
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.37
Consensus pattern (23 bp):
GCAGTCCAATTATATATGTATAT
Found at i:15790793 original size:47 final size:47
Alignment explanation
Indices: 15790619--15790781 Score: 240
Period size: 47 Copynumber: 3.5 Consensus size: 47
15790609 GAGTAAATGA
*
15790619 ATGTATATGCTGTCAAATTTTGATGTACAAAAGCAGTCCAATTATAT
1 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAATTATAT
* *
15790666 ATGTATATGCTGTCAAATTTTGATATACAAATGCAGTCCGATTATAT
1 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAATTATAT
*
15790713 ATGTATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAAATT-T-T
1 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCC-AATTATAT
* *
15790759 GTATATATGCTGTCCAAATTTTG
1 ATGTATATGCTGT-CAAATTTTG
15790782 GTGTGAAAAT
Statistics
Matches: 106, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
46 12 0.11
47 91 0.86
48 3 0.03
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.39
Consensus pattern (47 bp):
ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAATTATAT
Found at i:15794480 original size:22 final size:22
Alignment explanation
Indices: 15794454--15794511 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
15794444 ATATCCAAAC
15794454 AATAACAACAAAATAGTAATAA
1 AATAACAACAAAATAGTAATAA
* * * *
15794476 TATAATAACAAATTAGTAGTAA
1 AATAACAACAAAATAGTAATAA
* *
15794498 AACAACAACGAAAT
1 AATAACAACAAAAT
15794512 GACAACAAAA
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.62, C:0.10, G:0.07, T:0.21
Consensus pattern (22 bp):
AATAACAACAAAATAGTAATAA
Found at i:15799657 original size:15 final size:15
Alignment explanation
Indices: 15799633--15799664 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
15799623 TATGCATGCA
*
15799633 AAATATAAAAGATAT
1 AAATACAAAAGATAT
15799648 AAATACAAAAGATAT
1 AAATACAAAAGATAT
15799663 AA
1 AA
15799665 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.03, G:0.06, T:0.22
Consensus pattern (15 bp):
AAATACAAAAGATAT
Found at i:15804900 original size:3 final size:3
Alignment explanation
Indices: 15804894--15804932 Score: 62
Period size: 3 Copynumber: 13.0 Consensus size: 3
15804884 CTACTATTAC
15804894 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -AGA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA
15804933 ACTGAACAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 1 0.03
3 32 0.94
4 1 0.03
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:15805978 original size:19 final size:18
Alignment explanation
Indices: 15805940--15805979 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
15805930 CCCTGGTGGC
*
15805940 GGCGTGGCTCGGCTCGGA
1 GGCGTGGCTCGGCGCGGA
*
15805958 GGCGTGGCTTTGGCGCGGA
1 GGCGTGGC-TCGGCGCGGA
15805977 GGC
1 GGC
15805980 ACTACATGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.05, C:0.25, G:0.53, T:0.17
Consensus pattern (18 bp):
GGCGTGGCTCGGCGCGGA
Found at i:15816388 original size:18 final size:18
Alignment explanation
Indices: 15816362--15816400 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
15816352 AATCAAAATT
15816362 TAAAAATCAAAATTAAAC
1 TAAAAATCAAAATTAAAC
* **
15816380 TAAAGATCAAGTTTAAAC
1 TAAAAATCAAAATTAAAC
15816398 TAA
1 TAA
15816401 TTATAGAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.59, C:0.10, G:0.05, T:0.26
Consensus pattern (18 bp):
TAAAAATCAAAATTAAAC
Found at i:15816476 original size:37 final size:37
Alignment explanation
Indices: 15816435--15816512 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
15816425 AAATAGTTTG
* ** * *
15816435 ATCTTTATCCAACCATTTTTTAATTTTCAACCC-TTCA
1 ATCTTAATCCAACCAACTTTAAATCTTC-ACCCTTTCA
15816472 ATCTTAATCCAACCAACTTTAAATCTTCACCCTTTCA
1 ATCTTAATCCAACCAACTTTAAATCTTCACCCTTTCA
15816509 ATCT
1 ATCT
15816513 AGCCATCTTC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
36 4 0.11
37 31 0.89
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.41
Consensus pattern (37 bp):
ATCTTAATCCAACCAACTTTAAATCTTCACCCTTTCA
Found at i:15818245 original size:21 final size:20
Alignment explanation
Indices: 15818198--15818257 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
15818188 CACAGGCTGC
* **
15818198 TCACACGGGCGTGTGTCCCT
1 TCACATGGGCGTGTGGACCT
* *
15818218 CCACATGGGTGTGTGCGACCT
1 TCACATGGGCGTGTG-GACCT
15818239 TCACATGGGCGTGTGGACC
1 TCACATGGGCGTGTGGACC
15818258 CCCACACAGC
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
20 16 0.50
21 16 0.50
ACGTcount: A:0.13, C:0.30, G:0.33, T:0.23
Consensus pattern (20 bp):
TCACATGGGCGTGTGGACCT
Found at i:15819519 original size:34 final size:34
Alignment explanation
Indices: 15819473--15819542 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
15819463 TCCTAGCCCG
15819473 GGTTTTGAGGCGTTACAAGATATTTAAAGATTTT
1 GGTTTTGAGGCGTTACAAGATATTTAAAGATTTT
*
15819507 GGTTTTGGGGCGTTACAAGATATTTAAAGATTTT
1 GGTTTTGAGGCGTTACAAGATATTTAAAGATTTT
15819541 GG
1 GG
15819543 CATATTCCCT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.27, C:0.06, G:0.27, T:0.40
Consensus pattern (34 bp):
GGTTTTGAGGCGTTACAAGATATTTAAAGATTTT
Found at i:15820977 original size:24 final size:24
Alignment explanation
Indices: 15820929--15820975 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
15820919 ACTGGTCATA
*
15820929 GAGAGAATTGAGGAGGGATATTTG
1 GAGAGAATTGAGGAGGAATATTTG
*
15820953 GAGAGATTTGAGGAGAGAATATT
1 GAGAGAATTGAGGAG-GAATATT
15820976 GGGATTTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.36, C:0.00, G:0.38, T:0.26
Consensus pattern (24 bp):
GAGAGAATTGAGGAGGAATATTTG
Found at i:15821679 original size:27 final size:26
Alignment explanation
Indices: 15821643--15821944 Score: 291
Period size: 27 Copynumber: 11.3 Consensus size: 26
15821633 AGAGGTCAAT
15821643 AAATGACCGAATTACCCCCACAGGGTA
1 AAATGACCGAA-TACCCCCACAGGGTA
15821670 AAATGACCGAATA-CCCCACAGGGTA
1 AAATGACCGAATACCCCCACAGGGTA
* *
15821695 AAATAACCGAATTATCCCCACAGGGTA
1 AAATGACCGAA-TACCCCCACAGGGTA
* *
15821722 AAATGACCAAATTACCCCCACAAGGTA
1 AAATGACCGAA-TACCCCCACAGGGTA
* * **
15821749 AAATGATCGAAATAACCTTACAGGGTA
1 AAATGACCG-AATACCCCCACAGGGTA
** *
15821776 AAATGATCAAAATACCCCTACAGGGTA
1 AAATGA-CCGAATACCCCCACAGGGTA
*
15821803 AAATGACCGGAATACCCCCATAGGGTA
1 AAATGACC-GAATACCCCCACAGGGTA
* * *
15821830 AAATGACCGAAATACCTCCATAAGGTA
1 AAATGACCG-AATACCCCCACAGGGTA
* * * *
15821857 AAATGACTGGAATACCCCTATAAGGTA
1 AAATGAC-CGAATACCCCCACAGGGTA
* * * *
15821884 AAATGATCGGAATACCCTCATAAGGTA
1 AAATGA-CCGAATACCCCCACAGGGTA
*
15821911 AAATGACCGAAATACCCCCATAGGGTA
1 AAATGACCG-AATACCCCCACAGGGTA
15821938 AAATGAC
1 AAATGAC
15821945 TATTATACCC
Statistics
Matches: 236, Mismatches: 30, Indels: 18
0.83 0.11 0.06
Matches are distributed among these distances:
25 22 0.09
26 8 0.03
27 202 0.86
28 4 0.02
ACGTcount: A:0.42, C:0.24, G:0.17, T:0.18
Consensus pattern (26 bp):
AAATGACCGAATACCCCCACAGGGTA
Found at i:15821954 original size:54 final size:53
Alignment explanation
Indices: 15821643--15821944 Score: 322
Period size: 54 Copynumber: 5.6 Consensus size: 53
15821633 AGAGGTCAAT
* * *
15821643 AAATGACCGAATTACCCCCACAGGGTAAAATGACCG-AATACCCCACAGGGTA
1 AAATGACCGAAATACCCCCACAGGGTAAAATGACCGAAATACCCCATAAGGTA
* * * *
15821695 AAATAACCGAATTATCCCCACAGGGTAAAATGACC-AAATTACCCCCACAAGGTA
1 AAATGACCGAAATACCCCCACAGGGTAAAATGACCGAAA-TA-CCCCATAAGGTA
* * ** * *
15821749 AAATGATCGAAATAACCTTACAGGGTAAAATGATCAAAATACCCC-TACAGGGTA
1 AAATGACCGAAATACCCCCACAGGGTAAAATGACCGAAATACCCCATA-A-GGTA
* *
15821803 AAATGACCGGAATACCCCCATAGGGTAAAATGACCGAAATACCTCCATAAGGTA
1 AAATGACCGAAATACCCCCACAGGGTAAAATGACCGAAATACC-CCATAAGGTA
* * * * * * *
15821857 AAATGACTGGAATACCCCTATAAGGTAAAATGATCGGAATACCCTCATAAGGTA
1 AAATGACCGAAATACCCCCACAGGGTAAAATGACCGAAATACCC-CATAAGGTA
*
15821911 AAATGACCGAAATACCCCCATAGGGTAAAATGAC
1 AAATGACCGAAATACCCCCACAGGGTAAAATGAC
15821945 TATTATACCC
Statistics
Matches: 212, Mismatches: 29, Indels: 16
0.82 0.11 0.06
Matches are distributed among these distances:
52 36 0.17
53 8 0.04
54 160 0.75
55 6 0.03
56 2 0.01
ACGTcount: A:0.42, C:0.24, G:0.17, T:0.18
Consensus pattern (53 bp):
AAATGACCGAAATACCCCCACAGGGTAAAATGACCGAAATACCCCATAAGGTA
Found at i:15822137 original size:26 final size:26
Alignment explanation
Indices: 15822107--15822213 Score: 144
Period size: 26 Copynumber: 4.1 Consensus size: 26
15822097 TGGAGGAAGT
*
15822107 ATACTGTTACTGGTAGCTTTGCTGCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
*
15822133 ATACTGTTACTGGCAGTTTTGCTGCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
* * *
15822159 ATACTGTTATTGAG-AGTTTTGTTGCG
1 ATACTGTTACTG-GCAGCTTTGCTGCG
*
15822185 ATACTATTACTGGCAGCTTTGCTGCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
15822211 ATA
1 ATA
15822214 TTGGTGTGTT
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
25 1 0.01
26 69 0.97
27 1 0.01
ACGTcount: A:0.19, C:0.17, G:0.25, T:0.39
Consensus pattern (26 bp):
ATACTGTTACTGGCAGCTTTGCTGCG
Found at i:15825572 original size:64 final size:64
Alignment explanation
Indices: 15825461--15825649 Score: 252
Period size: 64 Copynumber: 3.0 Consensus size: 64
15825451 CATAAAGAGC
* * * *
15825461 CATATATCAAGACGCTCATAAAGAGCTGTGGTATGTCTGCAATACATGTAGGATCAATACCAAT
1 CATATATCAAGACGCTCACAAAGAGCTGCGGTATGTCCGCAATACATGCAGGATCAATACCAAT
* * * *
15825525 CATATATCAGGACGCTCACAAAGAGCTGCGGTATGTCCACAACACATGCAGGATCAATACCGAT
1 CATATATCAAGACGCTCACAAAGAGCTGCGGTATGTCCGCAATACATGCAGGATCAATACCAAT
* * * * * *
15825589 CATATAACATGATGCTTACAAAGAGTTGCGGTATGTCCGCAATACATGCATGATCAATACC
1 CATATATCAAGACGCTCACAAAGAGCTGCGGTATGTCCGCAATACATGCAGGATCAATACC
15825650 GATGGGGATG
Statistics
Matches: 109, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
64 109 1.00
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (64 bp):
CATATATCAAGACGCTCACAAAGAGCTGCGGTATGTCCGCAATACATGCAGGATCAATACCAAT
Found at i:15832812 original size:11 final size:11
Alignment explanation
Indices: 15832796--15832820 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
15832786 ATTTTTATTT
15832796 CATTATTAGTC
1 CATTATTAGTC
15832807 CATTATTAGTC
1 CATTATTAGTC
15832818 CAT
1 CAT
15832821 CTTTGTTTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.20, G:0.08, T:0.44
Consensus pattern (11 bp):
CATTATTAGTC
Found at i:15833963 original size:22 final size:20
Alignment explanation
Indices: 15833938--15833985 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 20
15833928 ATACTAAAAT
15833938 AATAAATTTAAATATTTTAAA
1 AATAAATTTAAA-ATTTTAAA
* *
15833959 CAATATGATTTTAAATTTTAAA
1 -AATA-AATTTAAAATTTTAAA
15833981 AATAA
1 AATAA
15833986 CATAATATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
21 4 0.18
22 12 0.55
23 6 0.27
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (20 bp):
AATAAATTTAAAATTTTAAA
Found at i:15833969 original size:23 final size:21
Alignment explanation
Indices: 15833943--15833984 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
15833933 AAAATAATAA
15833943 ATTTAAATATTTTAAACAATATG
1 ATTTAAA-ATTTTAAA-AATATG
*
15833966 ATTTTAAATTTTAAAAATA
1 ATTTAAAATTTTAAAAATA
15833985 ACATAATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 8 0.44
23 6 0.33
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (21 bp):
ATTTAAAATTTTAAAAATATG
Found at i:15837704 original size:9 final size:9
Alignment explanation
Indices: 15837675--15837704 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
15837665 GAATTTTTAC
15837675 AATTCGAAT
1 AATTCGAAT
*
15837684 AACTCGAAT
1 AATTCGAAT
15837693 AATTCGAAT
1 AATTCGAAT
15837702 AAT
1 AAT
15837705 ATATTAGTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.47, C:0.13, G:0.10, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:15837806 original size:21 final size:20
Alignment explanation
Indices: 15837781--15837826 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
15837771 ACAAAAATTA
*
15837781 CAAAACAATCAAAATAATTTT
1 CAAAA-AATAAAAATAATTTT
*
15837802 CAAAAATTAAAAATAATTTT
1 CAAAAAATAAAAATAATTTT
*
15837822 TAAAA
1 CAAAA
15837827 TTCAAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (20 bp):
CAAAAAATAAAAATAATTTT
Found at i:15837845 original size:19 final size:19
Alignment explanation
Indices: 15837789--15837854 Score: 80
Period size: 19 Copynumber: 3.4 Consensus size: 19
15837779 TACAAAACAA
15837789 TCAAAATAATTTTCAAAAAT
1 TCAAAATAATTTT-AAAAAT
* *
15837809 TAAAAATAATTTTTAAAAT
1 TCAAAATAATTTTAAAAAT
15837828 TCAAAAT-ATTTATAAAAAT
1 TCAAAATAATTT-TAAAAAT
15837847 TCTAAAAT
1 TC-AAAAT
15837855 TTGTATTTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
18 4 0.10
19 19 0.47
20 17 0.43
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (19 bp):
TCAAAATAATTTTAAAAAT
Found at i:15838012 original size:3 final size:3
Alignment explanation
Indices: 15838004--15838028 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
15837994 CTAAAATATC
15838004 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
15838029 GCTTTCAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:15838278 original size:21 final size:21
Alignment explanation
Indices: 15838252--15838291 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
15838242 ACTTTATCTA
*
15838252 AAGTTAAAAATCAAAACTATC
1 AAGTTAAAAAGCAAAACTATC
*
15838273 AAGTTAAAAGGCAAAACTA
1 AAGTTAAAAAGCAAAACTA
15838292 CGTTGTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.57, C:0.12, G:0.10, T:0.20
Consensus pattern (21 bp):
AAGTTAAAAAGCAAAACTATC
Found at i:15845263 original size:15 final size:15
Alignment explanation
Indices: 15845238--15845272 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
15845228 GACTCTATTT
*
15845238 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
15845252 TAATTAATATTAAGA
1 TAATTAATATTAAGA
15845267 TAATTA
1 TAATTA
15845273 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:15847125 original size:10 final size:10
Alignment explanation
Indices: 15847079--15847125 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
15847069 TTCCTAAAGC
*
15847079 ATAAAAA-AT
1 ATAAAAATAA
15847088 ATAAATAATAA
1 ATAAA-AATAA
*
15847099 ATAAATATAA
1 ATAAAAATAA
*
15847109 ATCAAAATAA
1 ATAAAAATAA
15847119 ATAAAAA
1 ATAAAAA
15847126 AGAAAAAAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
9 5 0.16
10 20 0.65
11 6 0.19
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.23
Consensus pattern (10 bp):
ATAAAAATAA
Found at i:15847702 original size:15 final size:15
Alignment explanation
Indices: 15847682--15847711 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
15847672 TATTTTAAGT
*
15847682 ATATTAGGATAATTA
1 ATATTAAGATAATTA
15847697 ATATTAAGATAATTA
1 ATATTAAGATAATTA
15847712 TTAAGGATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:15854080 original size:40 final size:40
Alignment explanation
Indices: 15853994--15854102 Score: 146
Period size: 40 Copynumber: 2.7 Consensus size: 40
15853984 CTTTTCTCCT
** * *
15853994 AAATCGCGTCCACGTCAGCGCGATGTCAGGGGACGTGTCAGC
1 AAATCGCGTCCACGTCAGCGCG--GTTTGCGGACGTGGCAGC
*
15854036 AAATCGCGTCCACGTCAGCGCGGTTTGCTGACGTGGCAGC
1 AAATCGCGTCCACGTCAGCGCGGTTTGCGGACGTGGCAGC
*
15854076 AAATCGCGTCCACGTAAGCGCGGTTTG
1 AAATCGCGTCCACGTCAGCGCGGTTTG
15854103 TGTCCACGTC
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
40 39 0.64
42 22 0.36
ACGTcount: A:0.20, C:0.28, G:0.32, T:0.19
Consensus pattern (40 bp):
AAATCGCGTCCACGTCAGCGCGGTTTGCGGACGTGGCAGC
Found at i:15854355 original size:11 final size:12
Alignment explanation
Indices: 15854279--15854356 Score: 96
Period size: 11 Copynumber: 6.9 Consensus size: 12
15854269 CACAAACTAA
15854279 TCCTCTCAAATT
1 TCCTCTCAAATT
15854291 TCCTCTC-AATT
1 TCCTCTCAAATT
15854302 TCCTCTC-AATT
1 TCCTCTCAAATT
15854313 TCCTCTC-AATT
1 TCCTCTCAAATT
*
15854324 TGCTCTCAAA-T
1 TCCTCTCAAATT
15854335 TCCT-TCCAAATT
1 TCCTCT-CAAATT
15854347 T-CTCTCAAAT
1 TCCTCTCAAAT
15854357 CCATATTTAA
Statistics
Matches: 60, Mismatches: 2, Indels: 9
0.85 0.03 0.13
Matches are distributed among these distances:
10 1 0.02
11 47 0.78
12 12 0.20
ACGTcount: A:0.23, C:0.33, G:0.01, T:0.42
Consensus pattern (12 bp):
TCCTCTCAAATT
Found at i:15854374 original size:51 final size:51
Alignment explanation
Indices: 15854316--15854415 Score: 148
Period size: 51 Copynumber: 2.0 Consensus size: 51
15854306 CTCAATTTCC
15854316 TCTCAATTTGCTCTCAAATTCCT-TCCAAATTTCTCTCAAATCCATATTTAA
1 TCTCAATTTGCTCTCAAATTCCTAT-CAAATTTCTCTCAAATCCATATTTAA
* * * *
15854367 TCTCAATTTGCTCTCAAGTTCCTATTAAATTTCTCTTAAATCCCTATTT
1 TCTCAATTTGCTCTCAAATTCCTATCAAATTTCTCTCAAATCCATATTT
15854416 TTAAATAATT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 43 0.98
52 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.03, T:0.44
Consensus pattern (51 bp):
TCTCAATTTGCTCTCAAATTCCTATCAAATTTCTCTCAAATCCATATTTAA
Found at i:15859002 original size:124 final size:125
Alignment explanation
Indices: 15858439--15859006 Score: 757
Period size: 126 Copynumber: 4.5 Consensus size: 125
15858429 CCCAAACATG
* ** * *
15858439 CTACTGTAGCAAAAGCGCGTCCACATGGGTGCGATTTCACAAATTCTTTTCATAAAGCATCTTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTCATAAAGCATCCTGC
* * * *
15858504 TAGAAGCGA-TTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTCCAAGAC
66 TTGAAGCGATTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
* * * *
15858563 CTAATGTAGCAAAAGCGCGTCCGCGAGGGCACGATTTCACAAATTCTTCTCA-AATAGCATCTTG
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTCATAA-AGCATCCTG
* * * * * *
15858627 CTTGCAGCGTTGTTTTATACTATTTGCTCAGAAATGTCAACTCAAAATTATTTTTTCAGGAC
65 CTTGAAGCGAT-TTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
* *
15858689 TTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTCATAAAGCATCCTGC
* * *
15858754 TTGAAACGGTTTTTTAAACTATTTGCTCAGAAACATCAACTCGAAATTATTTCTTCCAGGAC
66 TTGAAGC-GATTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTT-TTCCAGGAC
* * * *
15858816 CAACTGTAGCAAAAGCGCGTCCACGAGGGCACAATTTCACAAATTCTTCTCATAAAGTATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTCATAAAGCATCCTGC
15858881 TTGAAGC-ATTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
66 TTGAAGCGATTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
* * * * * *
15858940 CTACTGTAGCAAAAGCGCGTACACGTGGGCACGACTTT-AAAAATCCTTTTGATAAATCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCACGA-TTTCACAAATTCTTCTCATAAAGCATCCTG
15859004 CTT
65 CTT
15859007 TGATTTTATC
Statistics
Matches: 390, Mismatches: 47, Indels: 14
0.86 0.10 0.03
Matches are distributed among these distances:
123 2 0.01
124 123 0.32
125 44 0.11
126 143 0.37
127 78 0.20
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.31
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTCATAAAGCATCCTGC
TTGAAGCGATTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
Found at i:15860974 original size:15 final size:15
Alignment explanation
Indices: 15860950--15860980 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
15860940 ATATATTATG
15860950 ACTTGCTATTATGCT
1 ACTTGCTATTATGCT
*
15860965 ACTTGTTATTATGCT
1 ACTTGCTATTATGCT
15860980 A
1 A
15860981 ACATGTACTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.16, G:0.13, T:0.48
Consensus pattern (15 bp):
ACTTGCTATTATGCT
Found at i:15869437 original size:32 final size:32
Alignment explanation
Indices: 15869391--15869451 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
15869381 TGTCAATCAT
15869391 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCCAACAAGCTTAAAACATAATAAA
*
15869423 TTCAATATCTAACAAGCTTAAAACATAAT
1 TTCAATATCCAACAAGCTTAAAACATAAT
15869452 CAATATCTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.51, C:0.18, G:0.03, T:0.28
Consensus pattern (32 bp):
TTCAATATCCAACAAGCTTAAAACATAATAAA
Found at i:15869458 original size:27 final size:30
Alignment explanation
Indices: 15869391--15869462 Score: 96
Period size: 32 Copynumber: 2.4 Consensus size: 30
15869381 TGTCAATCAT
*
15869391 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCTAACAAGCTTAAAAC--AATAAA
15869423 TTCAATATCTAACAAGCTTAAAAC-AT-AA
1 TTCAATATCTAACAAGCTTAAAACAATAAA
15869451 -TCAATATCTAAC
1 TTCAATATCTAAC
15869463 GAATTCAAGA
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
27 12 0.31
28 2 0.05
29 2 0.05
32 23 0.59
ACGTcount: A:0.50, C:0.19, G:0.03, T:0.28
Consensus pattern (30 bp):
TTCAATATCTAACAAGCTTAAAACAATAAA
Found at i:15897172 original size:28 final size:27
Alignment explanation
Indices: 15897119--15897175 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
15897109 CAATTTTTTA
** **
15897119 AATATTTTTTATCAAATAAATTAATTT
1 AATATTTTTTAAAAAATAAAAAAATTT
15897146 AATATTTTTTAAAAAATGAAAAAAATTT
1 AATATTTTTTAAAAAAT-AAAAAAATTT
15897174 AA
1 AA
15897176 CTGTAAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 15 0.60
28 10 0.40
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (27 bp):
AATATTTTTTAAAAAATAAAAAAATTT
Found at i:15898337 original size:16 final size:16
Alignment explanation
Indices: 15898318--15898364 Score: 76
Period size: 16 Copynumber: 2.9 Consensus size: 16
15898308 CGCTGTATTA
15898318 GAATAGAGGTGTAATG
1 GAATAGAGGTGTAATG
*
15898334 GAATAGAGGCGTAATG
1 GAATAGAGGTGTAATG
*
15898350 GATTAGAGGTGTAAT
1 GAATAGAGGTGTAAT
15898365 AGCAAATCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.36, C:0.02, G:0.36, T:0.26
Consensus pattern (16 bp):
GAATAGAGGTGTAATG
Found at i:15898395 original size:45 final size:44
Alignment explanation
Indices: 15898344--15898437 Score: 118
Period size: 44 Copynumber: 2.1 Consensus size: 44
15898334 GAATAGAGGC
* *
15898344 GTAATGGATTAGAGGTGTAATAGCAAATCAAT-TGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAG-AAATC-ATGTGTTTGGTTGAAT
* * *
15898389 GTAATGGAATAGAGGCGTAATAGTATTCTTGTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAGAAATCATGTGTTTGGTTGAAT
15898433 GTAAT
1 GTAAT
15898438 AGAGGTGTAA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
43 1 0.02
44 21 0.49
45 21 0.49
ACGTcount: A:0.31, C:0.04, G:0.28, T:0.37
Consensus pattern (44 bp):
GTAATGGAATAGAGGCGTAATAGAAATCATGTGTTTGGTTGAAT
Found at i:15898615 original size:16 final size:16
Alignment explanation
Indices: 15898578--15898619 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
15898568 TTAATCATAT
*
15898578 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
15898594 TT-AAATATATTATAA
1 TTAAAATATATTATAA
15898609 TTAAAATATAT
1 TTAAAATATAT
15898620 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:15898626 original size:14 final size:15
Alignment explanation
Indices: 15898587--15898628 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
15898577 TTTAAACATA
*
15898587 ATTATTATTAAATAT
1 ATTATAATTAAATAT
15898602 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
15898616 A-TATAATTTAATA
1 ATTATAATTAAATA
15898629 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:15898719 original size:120 final size:120
Alignment explanation
Indices: 15898581--15898923 Score: 652
Period size: 120 Copynumber: 2.9 Consensus size: 120
15898571 ATCATATTTA
15898581 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
15898646 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
* *
15898701 AACATAATAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
15898766 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAATTT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
15898821 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
15898886 TATTCTTATATGAATTTACTCAAATCATAATATA-GATA
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATA
15898924 ATTTAACATA
Statistics
Matches: 218, Mismatches: 5, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
119 4 0.02
120 214 0.98
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:15898857 original size:16 final size:16
Alignment explanation
Indices: 15898813--15898859 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
15898803 TACTATAAAA
*
15898813 TATAATTTAACATA-AT
1 TATAA-TTAAAATATAT
*
15898829 TATTATT-AAATATAT
1 TATAATTAAAATATAT
15898844 TATAATTAAAATATAT
1 TATAATTAAAATATAT
15898860 AATTTAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 4 0.15
15 10 0.38
16 12 0.46
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
TATAATTAAAATATAT
Found at i:15904631 original size:17 final size:18
Alignment explanation
Indices: 15904606--15904649 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
15904596 TTAAACCAAG
*
15904606 AGATACAATTGT-TCAAA
1 AGATGCAATTGTATCAAA
*
15904623 AGATGCAATTGTATGAAA
1 AGATGCAATTGTATCAAA
*
15904641 AAATGCAAT
1 AGATGCAAT
15904650 ATTAAACCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 11 0.48
18 12 0.52
ACGTcount: A:0.48, C:0.09, G:0.16, T:0.27
Consensus pattern (18 bp):
AGATGCAATTGTATCAAA
Found at i:15904728 original size:42 final size:42
Alignment explanation
Indices: 15904669--15904758 Score: 171
Period size: 42 Copynumber: 2.1 Consensus size: 42
15904659 AGAGATACAG
15904669 TTATTTAATTTGAGCATCAATTTATCATTCATCACTCAACAA
1 TTATTTAATTTGAGCATCAATTTATCATTCATCACTCAACAA
*
15904711 TTATTTAATTTGAGCATCAATTTATCATTCATCATTCAACAA
1 TTATTTAATTTGAGCATCAATTTATCATTCATCACTCAACAA
15904753 TTATTT
1 TTATTT
15904759 TCCCACAATC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.34, C:0.17, G:0.04, T:0.44
Consensus pattern (42 bp):
TTATTTAATTTGAGCATCAATTTATCATTCATCACTCAACAA
Found at i:15910549 original size:14 final size:14
Alignment explanation
Indices: 15910530--15910559 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
15910520 TAGAAGCATA
15910530 AACCAATCTTAAAT
1 AACCAATCTTAAAT
15910544 AACCAATCTTAAAT
1 AACCAATCTTAAAT
15910558 AA
1 AA
15910560 GTTACGATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.53, C:0.20, G:0.00, T:0.27
Consensus pattern (14 bp):
AACCAATCTTAAAT
Found at i:15922429 original size:3 final size:3
Alignment explanation
Indices: 15922421--15922445 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
15922411 CTTTTCCTTT
15922421 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
15922446 CCAGATTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:15931316 original size:30 final size:30
Alignment explanation
Indices: 15931255--15931475 Score: 141
Period size: 30 Copynumber: 7.4 Consensus size: 30
15931245 TCATCAACAA
* *
15931255 ATGAAAAGGGATAGCT-TCGGCTATC-AATT
1 ATGAAAAGGGATGGCTAT-GACTATCAAATT
*
15931284 ATGAAAAGGGATGG-TGATGACCATCAAATT
1 ATGAAAAGGGATGGCT-ATGACTATCAAATT
* * ** *
15931314 ATGAAAAGGGATGGCT-TCAGGTATCGTACT
1 ATGAAAAGGGATGGCTATGA-CTATCAAATT
* * * *
15931344 ATGAAAAGAGATGGCTTTGGCTATC-GATCT
1 ATGAAAAGGGATGGCTATGACTATCAAAT-T
* *
15931374 ATGAAAAGGGATGGCTTTGGCTATCAAATT
1 ATGAAAAGGGATGGCTATGACTATCAAATT
* * * **
15931404 ATGAAAAGGGATGG-TGACGACCATCGAACA
1 ATGAAAAGGGATGGCT-ATGACTATCAAATT
*
15931434 ATGAAAAGGGATGG-TGATGTCTATCAAATT
1 ATGAAAAGGGATGGCT-ATGACTATCAAATT
* *
15931464 GTGAAAAAGGAT
1 ATGAAAAGGGAT
15931476 AGCACCGACT
Statistics
Matches: 151, Mismatches: 32, Indels: 17
0.75 0.16 0.09
Matches are distributed among these distances:
28 1 0.01
29 22 0.15
30 124 0.82
31 4 0.03
ACGTcount: A:0.36, C:0.11, G:0.28, T:0.25
Consensus pattern (30 bp):
ATGAAAAGGGATGGCTATGACTATCAAATT
Found at i:15931387 original size:90 final size:89
Alignment explanation
Indices: 15931255--15931417 Score: 238
Period size: 90 Copynumber: 1.8 Consensus size: 89
15931245 TCATCAACAA
*
15931255 ATGAAAAGGGATAGCTTCGGCTATCAATTATGAAAAGGGATGG-TGATGACCATCAAATTATGAA
1 ATGAAAAGAGATAGCTTCGGCTATCAATTATGAAAAGGGATGGCT-ATGACCATCAAATTATGAA
15931319 AAGGGATGGCTTCAGGTATCGTACT
65 AAGGGATGGCTTCAGGTATCGTACT
* * * * * *
15931344 ATGAAAAGAGATGGCTTTGGCTATCGATCTATGAAAAGGGATGGCTTTGGCTATCAAATTATGAA
1 ATGAAAAGAGATAGCTTCGGCTATCAAT-TATGAAAAGGGATGGCTATGACCATCAAATTATGAA
15931409 AAGGGATGG
65 AAGGGATGG
15931418 TGACGACCAT
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
89 24 0.37
90 40 0.62
91 1 0.02
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.26
Consensus pattern (89 bp):
ATGAAAAGAGATAGCTTCGGCTATCAATTATGAAAAGGGATGGCTATGACCATCAAATTATGAAA
AGGGATGGCTTCAGGTATCGTACT
Found at i:15931407 original size:60 final size:59
Alignment explanation
Indices: 15931255--15931447 Score: 194
Period size: 60 Copynumber: 3.2 Consensus size: 59
15931245 TCATCAACAA
* *
15931255 ATGAAAAGGGATAGCTTCGGCTATCAATTATGAAAAGGGATGGTGATGACCATCAAATT
1 ATGAAAAGGGATGGCTTAGGCTATCAATTATGAAAAGGGATGGTGATGACCATCAAATT
* * * * * * *
15931314 ATGAAAAGGGATGGCTTCAGG-TATCGTACTATGAAAAGAGATGGCT-TTGGCTATC-GATCT
1 ATGAAAAGGGATGGCTT-AGGCTATC-AATTATGAAAAGGGATGG-TGATGACCATCAAAT-T
* * * **
15931374 ATGAAAAGGGATGGCTTTGGCTATCAAATTATGAAAAGGGATGGTGACGACCATCGAACA
1 ATGAAAAGGGATGGCTTAGGCTATC-AATTATGAAAAGGGATGGTGATGACCATCAAATT
15931434 ATGAAAAGGGATGG
1 ATGAAAAGGGATGG
15931448 TGATGTCTAT
Statistics
Matches: 106, Mismatches: 21, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
59 25 0.24
60 79 0.75
61 2 0.02
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.24
Consensus pattern (59 bp):
ATGAAAAGGGATGGCTTAGGCTATCAATTATGAAAAGGGATGGTGATGACCATCAAATT
Found at i:15931438 original size:90 final size:89
Alignment explanation
Indices: 15931246--15931447 Score: 223
Period size: 90 Copynumber: 2.3 Consensus size: 89
15931236 TAACAATGAT
*
15931246 CATC-AACAAATGAAAAGGGATAGCTTCGGCTATCAATTATGAAAAGGGATGGTGATGACCATCA
1 CATCGAAC-AATGAAAAGGGATGGCTTCGGCTATCAATTATGAAAAGGGATGGTGATGACCATCA
* *
15931310 AATTATGAAAAGGGATGGCTTCAGG
65 AATTATGAAAAGGGATGGCTACAGC
* * * * * * * * *
15931335 TATCGTACTATGAAAAGAGATGGCTTTGGCTATCGATCTATGAAAAGGGATGGCT-TTGGCTATC
1 CATCGAACAATGAAAAGGGATGGCTTCGGCTATCAAT-TATGAAAAGGGATGG-TGATGACCATC
15931399 AAATTATGAAAAGGGATGG-TGAC-GAC
64 AAATTATGAAAAGGGATGGCT-ACAG-C
15931425 CATCGAACAATGAAAAGGGATGG
1 CATCGAACAATGAAAAGGGATGG
15931448 TGATGTCTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 9
0.79 0.14 0.08
Matches are distributed among these distances:
89 29 0.32
90 62 0.67
91 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.27, T:0.24
Consensus pattern (89 bp):
CATCGAACAATGAAAAGGGATGGCTTCGGCTATCAATTATGAAAAGGGATGGTGATGACCATCAA
ATTATGAAAAGGGATGGCTACAGC
Found at i:15931490 original size:60 final size:60
Alignment explanation
Indices: 15931364--15931505 Score: 162
Period size: 60 Copynumber: 2.4 Consensus size: 60
15931354 ATGGCTTTGG
* * * * *
15931364 CTATCGATCTATGAAAAGGGATGGCTTTGGCTATCAAATTATGAAAAGGGATGGTGACGA
1 CTATCGAACTATGAAAAGGGATGGCTATGGCTATCAAATTATGAAAAAGGATAGTCACGA
* * * *
15931424 CCATCGAACAATGAAAAGGGATGG-TGATGTCTATCAAATTGTGAAAAAGGATAG-CACCGA
1 CTATCGAACTATGAAAAGGGATGGCT-ATGGCTATCAAATTATGAAAAAGGATAGTCA-CGA
*
15931484 CTATCGAGCTATGAAAAGGGAT
1 CTATCGAACTATGAAAAGGGAT
15931506 AACTTTAGTT
Statistics
Matches: 68, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
59 2 0.03
60 66 0.97
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.23
Consensus pattern (60 bp):
CTATCGAACTATGAAAAGGGATGGCTATGGCTATCAAATTATGAAAAAGGATAGTCACGA
Found at i:15937866 original size:16 final size:16
Alignment explanation
Indices: 15937845--15937875 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15937835 GTTTGCATTA
*
15937845 TTTTAATATTAAATAC
1 TTTTAAAATTAAATAC
15937861 TTTTAAAATTAAATA
1 TTTTAAAATTAAATA
15937876 ATATTCATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (16 bp):
TTTTAAAATTAAATAC
Found at i:15937984 original size:23 final size:23
Alignment explanation
Indices: 15937936--15937985 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
15937926 TAATTACATT
* * *
15937936 AATTTTTTAATAATTTTTAAATA
1 AATTTATTAATAAATTTTAAAAA
15937959 AATTTATTAA-AAATTTTAAACAA
1 AATTTATTAATAAATTTTAAA-AA
15937982 AATT
1 AATT
15937986 AATGTTTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (23 bp):
AATTTATTAATAAATTTTAAAAA
Found at i:15941019 original size:18 final size:18
Alignment explanation
Indices: 15940998--15941045 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
15940988 TATAAACTAT
15940998 TTAAAAAAT-TTAAAAATG
1 TTAAAAAATATTAAAAA-G
*
15941016 TT-AAAATTATTAAAAAG
1 TTAAAAAATATTAAAAAG
15941033 TCTAAAAAATATT
1 T-TAAAAAATATT
15941046 TTTTAATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 7 0.28
18 10 0.40
19 8 0.32
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.35
Consensus pattern (18 bp):
TTAAAAAATATTAAAAAG
Found at i:15943238 original size:14 final size:14
Alignment explanation
Indices: 15943219--15943245 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15943209 ATTTAAGATG
15943219 GAAATTAAACTAAT
1 GAAATTAAACTAAT
15943233 GAAATTAAACTAA
1 GAAATTAAACTAA
15943246 ACCTAAACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.26
Consensus pattern (14 bp):
GAAATTAAACTAAT
Found at i:15947338 original size:23 final size:23
Alignment explanation
Indices: 15947312--15947462 Score: 122
Period size: 23 Copynumber: 6.6 Consensus size: 23
15947302 CCCCAAAGAG
* *
15947312 ATTACAGCATACGCCATAAAGGC
1 ATTACAGAATACGCCACAAAGGC
* * *
15947335 ATTACAGAATATGCCACATAGAC
1 ATTACAGAATACGCCACAAAGGC
**
15947358 ATTACCTAATACGCCACAAAGGC
1 ATTACAGAATACGCCACAAAGGC
* * * *
15947381 ATTAAAAAATATGCCACAAAGCC
1 ATTACAGAATACGCCACAAAGGC
* * *
15947404 ATTATAGTATACGCCACATAGGC
1 ATTACAGAATACGCCACAAAGGC
* * * * *
15947427 ATTTCATAATATGCCATAAGGGC
1 ATTACAGAATACGCCACAAAGGC
*
15947450 ATTGCAGAATACG
1 ATTACAGAATACG
15947463 TAACATAGGT
Statistics
Matches: 96, Mismatches: 32, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
23 96 1.00
ACGTcount: A:0.40, C:0.23, G:0.15, T:0.22
Consensus pattern (23 bp):
ATTACAGAATACGCCACAAAGGC
Found at i:15947437 original size:69 final size:69
Alignment explanation
Indices: 15947324--15947452 Score: 159
Period size: 69 Copynumber: 1.9 Consensus size: 69
15947314 TACAGCATAC
* * * *
15947324 GCCATAAAGGCATTACAGAATATGCCACATAGACATTACCTAATACGCCACAAAGGCATTAAAAA
1 GCCACAAAGCCATTACAGAATACGCCACATAGACATTACATAATACGCCACAAAGGCATTAAAAA
15947389 ATAT
66 ATAT
* * * * * * *
15947393 GCCACAAAGCCATTATAGTATACGCCACATAGGCATTTCATAATATGCCATAAGGGCATT
1 GCCACAAAGCCATTACAGAATACGCCACATAGACATTACATAATACGCCACAAAGGCATT
15947453 GCAGAATACG
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
69 49 1.00
ACGTcount: A:0.40, C:0.22, G:0.15, T:0.22
Consensus pattern (69 bp):
GCCACAAAGCCATTACAGAATACGCCACATAGACATTACATAATACGCCACAAAGGCATTAAAAA
ATAT
Found at i:15947462 original size:46 final size:46
Alignment explanation
Indices: 15947312--15947484 Score: 148
Period size: 46 Copynumber: 3.8 Consensus size: 46
15947302 CCCCAAAGAG
* * * * * * *
15947312 ATTACAGCATACGCCATAAAGGCATTACAGAATATGCCACATAGAC
1 ATTACAGAATACGCCACATAGGCATTTCAAAATATGCCACAAAGCC
** * **
15947358 ATTACCTAATACGCCACAAAGGCATTAAAAAATATGCCACAAAGCC
1 ATTACAGAATACGCCACATAGGCATTTCAAAATATGCCACAAAGCC
* * * * * *
15947404 ATTATAGTATACGCCACATAGGCATTTCATAATATGCCATAAGGGC
1 ATTACAGAATACGCCACATAGGCATTTCAAAATATGCCACAAAGCC
* ** *
15947450 ATTGCAGAATACGTAACATAGGTATTTCAAAATAT
1 ATTACAGAATACGCCACATAGGCATTTCAAAATAT
15947485 CTTGCATAAA
Statistics
Matches: 101, Mismatches: 26, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
46 101 1.00
ACGTcount: A:0.41, C:0.21, G:0.14, T:0.24
Consensus pattern (46 bp):
ATTACAGAATACGCCACATAGGCATTTCAAAATATGCCACAAAGCC
Found at i:15972808 original size:30 final size:30
Alignment explanation
Indices: 15972742--15972809 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
15972732 AAATAAATAA
* * *
15972742 ATAACTTTAAATGGTTTAGTGACTTAAATG
1 ATAACTTTAAATGGCTTAGTAACTCAAATG
* *
15972772 AAAACTTTCAAATGGCTTAGTAAC-CAAATT
1 ATAACTTT-AAATGGCTTAGTAACTCAAATG
15972802 ATAACTTT
1 ATAACTTT
15972810 TTTAGTTAAG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
30 18 0.58
31 13 0.42
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (30 bp):
ATAACTTTAAATGGCTTAGTAACTCAAATG
Found at i:15977134 original size:3 final size:3
Alignment explanation
Indices: 15977126--15977150 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
15977116 TAGGATAAAC
15977126 ACA ACA ACA ACA ACA ACA ACA ACA A
1 ACA ACA ACA ACA ACA ACA ACA ACA A
15977151 AGAGTTAGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:15977827 original size:30 final size:30
Alignment explanation
Indices: 15977776--15977832 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
15977766 GAGAAGGAAG
*
15977776 AAATAATAATGTGTTTCTTTTTCTTTTGGT
1 AAATAATAATGTGTTTCTTTTTATTTTGGT
15977806 AAAT-ATAATGTGTTTCTTTTTTATTTT
1 AAATAATAATGTGTTTC-TTTTTATTTT
15977833 TACTTATATG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 12 0.48
30 13 0.52
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.60
Consensus pattern (30 bp):
AAATAATAATGTGTTTCTTTTTATTTTGGT
Found at i:15986168 original size:22 final size:22
Alignment explanation
Indices: 15986143--15986185 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
15986133 CAATTTCAAG
15986143 TTTAAATT-TGTACTAACTATTC
1 TTTAAATTATGT-CTAACTATTC
**
15986165 TTTATTTTATGTCTAACTATT
1 TTTAAATTATGTCTAACTATT
15986186 GTAATACATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.28, C:0.12, G:0.05, T:0.56
Consensus pattern (22 bp):
TTTAAATTATGTCTAACTATTC
Found at i:15990378 original size:68 final size:68
Alignment explanation
Indices: 15990270--15990403 Score: 171
Period size: 68 Copynumber: 2.0 Consensus size: 68
15990260 TGATTAAACT
* ** * ** *
15990270 TAATCATTTTAATATAAATTAATATGATACTTATCCAGATAAATATTTTATTTAATTTAATTTTA
1 TAATCACTTTAATATAAATTAATAAAATACTTATCAAGATAAATATTAAATTTAATTTAATATTA
15990335 AGA
66 AGA
* *
15990338 TAATCACTTTAATTTTAAATTAATAAAATA-TTATTAAGATAAATATTAAATTTAATTTAATATT
1 TAATCACTTTAA-TATAAATTAATAAAATACTTATCAAGATAAATATTAAATTTAATTTAATATT
15990402 AA
65 AA
15990404 TATTATTAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
68 42 0.75
69 14 0.25
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.46
Consensus pattern (68 bp):
TAATCACTTTAATATAAATTAATAAAATACTTATCAAGATAAATATTAAATTTAATTTAATATTA
AGA
Found at i:15990398 original size:37 final size:37
Alignment explanation
Indices: 15990346--15990422 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
15990336 GATAATCACT
* *
15990346 TTAATTTTAAATTAATA-AAATATTATTAAGATAAATA
1 TTAAATTTAAATTAATATAAATATTATTAAAAT-AATA
* *
15990383 TTAAATTTAATTTAATATTAATATTATTAAAATAATA
1 TTAAATTTAAATTAATATAAATATTATTAAAATAATA
15990420 TTA
1 TTA
15990423 TTTTTGGAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
37 22 0.63
38 13 0.37
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (37 bp):
TTAAATTTAAATTAATATAAATATTATTAAAATAATA
Found at i:15990657 original size:19 final size:19
Alignment explanation
Indices: 15990633--15990670 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
15990623 AGTTTTAGGT
15990633 TCTCAGGCCCAATTTTCAA
1 TCTCAGGCCCAATTTTCAA
* *
15990652 TCTCAGGTCTAATTTTCAA
1 TCTCAGGCCCAATTTTCAA
15990671 GTTTAATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTCAGGCCCAATTTTCAA
Found at i:15992424 original size:26 final size:26
Alignment explanation
Indices: 15992388--15992438 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
15992378 AGTACCCATC
15992388 CAACCCTACACACCAATTAGTGTCGA
1 CAACCCTACACACCAATTAGTGTCGA
15992414 CAACCCTACACACCAATTAGTGTCG
1 CAACCCTACACACCAATTAGTGTCG
15992439 GTATGACACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.35, G:0.12, T:0.20
Consensus pattern (26 bp):
CAACCCTACACACCAATTAGTGTCGA
Found at i:15993065 original size:62 final size:63
Alignment explanation
Indices: 15992927--15993090 Score: 190
Period size: 62 Copynumber: 2.6 Consensus size: 63
15992917 ATAACCCCTC
* * * *
15992927 ACACGGCCTGGACACACGCCTGTGTCCCT-GACCCATGTGACCCTAAATACCAAATAGTAAGTT
1 ACACGGCTTGGACACACGCCCGTGTCCCTAG-CCCATGTGACCCTAAATACCAAACAATAAGTT
** * * *
15992990 ACACACCTTGGACATAAGCCCGTGTCCCTAGCCCATGTGA-CCTAAAGTA-CAAACAATGAGTT
1 ACACGGCTTGGACACACGCCCGTGTCCCTAGCCCATGTGACCCTAAA-TACCAAACAATAAGTT
* *
15993052 ACACGGCTTGGACACACGCTCGTGTCCCTAGTCCATGTG
1 ACACGGCTTGGACACACGCCCGTGTCCCTAGCCCATGTG
15993091 CCTCTAATTC
Statistics
Matches: 84, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
62 49 0.58
63 34 0.40
64 1 0.01
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.21
Consensus pattern (63 bp):
ACACGGCTTGGACACACGCCCGTGTCCCTAGCCCATGTGACCCTAAATACCAAACAATAAGTT
Found at i:16003983 original size:16 final size:17
Alignment explanation
Indices: 16003964--16003998 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
16003954 TTGTTATTCA
*
16003964 AAATTT-AAATTATTTT
1 AAATTTCAAACTATTTT
16003980 AAATTTCAAACTATTTT
1 AAATTTCAAACTATTTT
16003997 AA
1 AA
16003999 TTGAGTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.49
Consensus pattern (17 bp):
AAATTTCAAACTATTTT
Found at i:16006738 original size:15 final size:13
Alignment explanation
Indices: 16006713--16006752 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 13
16006703 CATAATTCTG
*
16006713 TTATTATTTTATT
1 TTATTTTTTTATT
16006726 TTATATTTGTTTATT
1 TTAT-TTT-TTTATT
16006741 TTATTTTTTTAT
1 TTATTTTTTTAT
16006753 CAACTAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 9 0.38
14 5 0.21
15 10 0.42
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.78
Consensus pattern (13 bp):
TTATTTTTTTATT
Found at i:16007509 original size:19 final size:19
Alignment explanation
Indices: 16007482--16007518 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
16007472 TAAAAATAAA
16007482 TTAACTTATATAAATATGG
1 TTAACTTATATAAATATGG
* *
16007501 TTAATTTATGTAAATATG
1 TTAACTTATATAAATATG
16007519 TTGCAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.11, T:0.46
Consensus pattern (19 bp):
TTAACTTATATAAATATGG
Found at i:16013366 original size:102 final size:101
Alignment explanation
Indices: 16013186--16013529 Score: 476
Period size: 102 Copynumber: 3.4 Consensus size: 101
16013176 TATCGATGAA
*
16013186 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
* * *
16013251 TAAGTGAATGCTACAATGTGTATCGAGAAGCTTTGGT
66 TAAGTGAAGGCTACTATGTGTACCGA-AAGCTTTGGT
*
16013288 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
*
16013353 TAAGTGAAGGCTACTATGTGTACCAAAAAGCTTTGGT
66 TAAGTGAAGGCTACTATGTGTACC-GAAAGCTTTGGT
* *** * *
16013390 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGATCACGTGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
* * * * *
16013454 TATGTGAAGGCTACTACGTGAACCGTAAAAC-TTGAT
66 TAAGTGAAGGCTACTATGTGTACCG-AAAGCTTTGGT
* *
16013490 CACATGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGA
16013530 ATGATAAAAG
Statistics
Matches: 219, Mismatches: 20, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
100 40 0.18
101 45 0.21
102 133 0.61
103 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (101 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACTATGTGTACCGAAAGCTTTGGT
Found at i:16013456 original size:50 final size:50
Alignment explanation
Indices: 16013186--16013523 Score: 374
Period size: 51 Copynumber: 6.7 Consensus size: 50
16013176 TATCGATGAA
* * ***
16013186 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGGT
* * * * * * * *
16013237 CACATGTGTAGTACTAAGTGAATGCTACAATGTGTATCG-AGAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTA-AAAC-TTGGT
* * ***
16013288 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGGT
* * * * *
16013339 CACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACC-AAAAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAA-C-TTGGT
*
16013390 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGGT
*
16013440 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGGT
*
16013490 CACATGTGTAGTACTATGTGAAGGCTACTACGTG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
16013524 TATCGAATGA
Statistics
Matches: 243, Mismatches: 37, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
49 4 0.02
50 89 0.37
51 143 0.59
52 6 0.02
53 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGGT
Found at i:16013790 original size:37 final size:38
Alignment explanation
Indices: 16013721--16013793 Score: 103
Period size: 37 Copynumber: 1.9 Consensus size: 38
16013711 ATGTGTGGAA
* **
16013721 TTGAATTGAATATTGACTTGAAAATGGCAAAGTGAATT
1 TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAATT
*
16013759 TTGAATTGAATAGTGA-TTGAAAGTGAAAAAGTGAA
1 TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAA
16013794 ATTATGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 16 0.52
38 15 0.48
ACGTcount: A:0.42, C:0.03, G:0.23, T:0.32
Consensus pattern (38 bp):
TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAATT
Found at i:16021758 original size:63 final size:63
Alignment explanation
Indices: 16021624--16021760 Score: 150
Period size: 63 Copynumber: 2.2 Consensus size: 63
16021614 TGCAAAAATG
* * * * *
16021624 AATGATTTTGCATGCTGCGGTGCTTATGTAAAATAAAGTGGTGATGACTGTGTTGGTGCAGGG
1 AATGATTGTGCATGCTGCGGTGCTTATGTAAAATAAAGTGGTGATGACTATGTCGGTGCAAGA
* * * * * * *
16021687 AATAATTGTGCGTGTTGTGGTGCTTGTGTAAAATAAATTGGTGATGAAC-ATGTCGGTGCAATA
1 AATGATTGTGCATGCTGCGGTGCTTATGTAAAATAAAGTGGTGATG-ACTATGTCGGTGCAAGA
16021750 AATGATTGTGC
1 AATGATTGTGC
16021761 TTGTGGAAAA
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
63 58 0.97
64 2 0.03
ACGTcount: A:0.26, C:0.09, G:0.31, T:0.34
Consensus pattern (63 bp):
AATGATTGTGCATGCTGCGGTGCTTATGTAAAATAAAGTGGTGATGACTATGTCGGTGCAAGA
Found at i:16021900 original size:62 final size:63
Alignment explanation
Indices: 16021757--16021937 Score: 175
Period size: 63 Copynumber: 2.9 Consensus size: 63
16021747 ATAAATGATT
* * * * * *
16021757 GTGCTTGTGGAAAATAAATTGGTGTTGTATGTGTTGATGTAGGGAATGATTGTGCGTGCTGAT
1 GTGCATGTGGAAAATAAACTGGTGTTGTATGTATTGATGCAGGGAATGATTGTGCGTGCTAAG
* * * *
16021820 GTACATGTGGAAAATAAACTGTTTTTGTATGTATTGATGCAGGGAA-GATTGTGTGTGCTAAG
1 GTGCATGTGGAAAATAAACTGGTGTTGTATGTATTGATGCAGGGAATGATTGTGCGTGCTAAG
* * ** * * * * * *
16021882 GTGCGTGTGAAAAATAAACCAGAGTTGAAGGTGTAGATACAGGGAATGATTGTGCG
1 GTGCATGTGGAAAATAAACTGGTGTTGTATGTATTGATGCAGGGAATGATTGTGCG
16021938 CACTGTGATG
Statistics
Matches: 93, Mismatches: 24, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
62 46 0.49
63 47 0.51
ACGTcount: A:0.28, C:0.07, G:0.33, T:0.33
Consensus pattern (63 bp):
GTGCATGTGGAAAATAAACTGGTGTTGTATGTATTGATGCAGGGAATGATTGTGCGTGCTAAG
Found at i:16023373 original size:9 final size:9
Alignment explanation
Indices: 16023359--16023401 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
16023349 GTTTTCGAAT
16023359 TCGAATAAC
1 TCGAATAAC
16023368 TCGAATAAC
1 TCGAATAAC
*
16023377 TCGAATAAT
1 TCGAATAAC
*
16023386 TCGAATAAT
1 TCGAATAAC
16023395 TCGAATA
1 TCGAATA
16023402 TCAAACTATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (9 bp):
TCGAATAAC
Found at i:16024952 original size:14 final size:14
Alignment explanation
Indices: 16024930--16025023 Score: 71
Period size: 14 Copynumber: 6.7 Consensus size: 14
16024920 AAAAATTGGG
*
16024930 AATTTAGAATAAAA
1 AATTGAGAATAAAA
** *
16024944 AATTGAGAATTGAC
1 AATTGAGAATAAAA
*
16024958 GATTGAGAATAAAA
1 AATTGAGAATAAAA
* * **
16024972 AATCGAGAACAAGC
1 AATTGAGAATAAAA
16024986 AATTGAGAATAAAA
1 AATTGAGAATAAAA
* ** *
16025000 AATCGAGAGCAAGA
1 AATTGAGAATAAAA
16025014 AATTGAGAAT
1 AATTGAGAAT
16025024 CAAATTGTGA
Statistics
Matches: 56, Mismatches: 24, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
14 56 1.00
ACGTcount: A:0.54, C:0.06, G:0.19, T:0.20
Consensus pattern (14 bp):
AATTGAGAATAAAA
Found at i:16024954 original size:28 final size:28
Alignment explanation
Indices: 16024923--16025007 Score: 91
Period size: 28 Copynumber: 3.0 Consensus size: 28
16024913 AATTTTAAAA
* *
16024923 AATTGGGAATTTAGAATAAAAAATTGAG
1 AATTGGGAATTGAGAATAAAAAATCGAG
*
16024951 AATTGACG-ATTGAGAATAAAAAATCGAG
1 AATTG-GGAATTGAGAATAAAAAATCGAG
*** *
16024979 AACAAGCAATTGAGAATAAAAAATCGAG
1 AATTGGGAATTGAGAATAAAAAATCGAG
16025007 A
1 A
16025008 GCAAGAAATT
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
28 46 0.98
29 1 0.02
ACGTcount: A:0.53, C:0.06, G:0.20, T:0.21
Consensus pattern (28 bp):
AATTGGGAATTGAGAATAAAAAATCGAG
Found at i:16025012 original size:28 final size:28
Alignment explanation
Indices: 16024959--16025023 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
16024949 AGAATTGACG
*
16024959 ATTGAGAATAAAAAATCGAGAACAAGCA
1 ATTGAGAATAAAAAATCGAGAACAAGAA
*
16024987 ATTGAGAATAAAAAATCGAGAGCAAGAA
1 ATTGAGAATAAAAAATCGAGAACAAGAA
16025015 ATTGAGAAT
1 ATTGAGAAT
16025024 CAAATTGTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.55, C:0.08, G:0.20, T:0.17
Consensus pattern (28 bp):
ATTGAGAATAAAAAATCGAGAACAAGAA
Found at i:16028439 original size:3 final size:3
Alignment explanation
Indices: 16028415--16028478 Score: 103
Period size: 3 Copynumber: 21.3 Consensus size: 3
16028405 ATATGTAGGT
*
16028415 ATA ATA ATG ATA TATA AT- ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
16028460 ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA A
16028479 AATTGATAAA
Statistics
Matches: 57, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
2 2 0.04
3 52 0.91
4 3 0.05
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:16028947 original size:21 final size:19
Alignment explanation
Indices: 16028910--16028984 Score: 114
Period size: 19 Copynumber: 3.8 Consensus size: 19
16028900 AATCATATCT
16028910 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
16028929 TCCAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
16028950 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
16028969 TCTAAGATTGTATATC
1 TCTAAGATTGCATATC
16028985 CTCGAAGATT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 33 0.65
21 18 0.35
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:16029472 original size:44 final size:44
Alignment explanation
Indices: 16029415--16029583 Score: 248
Period size: 44 Copynumber: 3.8 Consensus size: 44
16029405 ATCAGATGCG
* * * * *
16029415 ATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCA
1 ATCTTTAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACA
* * *
16029459 ATCTTAAACCTATTCTATTGCTGACCAGGGAGATAGGATTCACA
1 ATCTTTAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACA
* *
16029503 ATCTTTAACCTATTCCACTGCTGTCGAGGGAGATAGGATTCACA
1 ATCTTTAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACA
16029547 ATCTTTAACCTATTCCACTGCTGACCAGGGAGATAGG
1 ATCTTTAACCTATTCCACTGCTGACCAGGGAGATAGG
16029584 GCTGGGGTAA
Statistics
Matches: 111, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 111 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (44 bp):
ATCTTTAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACA
Found at i:16029716 original size:44 final size:43
Alignment explanation
Indices: 16029666--16029892 Score: 100
Period size: 44 Copynumber: 5.2 Consensus size: 43
16029656 CAACCCAGAG
16029666 AGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCAGTGCAGGA
1 AGGCAAGGCTGGTGT-TTCGATCTGCTTCACTGTCAGTGCAGGA
** * * ** * * *** *
16029710 AGGCAAGATTTGCTATTTTTAGCCTGCTCCACTGT-AACCCAATG-
1 AGGCAAG-GCTGGTGTTTCGA-TCTGCTTCACTGTCAGTGC-AGGA
* * *
16029754 AGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAAGA
1 AGGCAAGGCTGGTGT-TTCGATCTGCTTCACTGTCAGTGCAGGA
* * * ** * * * * *** *
16029798 AGGCAAGATCTGCTATTTTTAGCCTGCTCCGCT-ACAACCCAGGG
1 AGGCAAG-GCTGGTGTTTCGA-TCTGCTTCACTGTCAGTGCAGGA
*
16029842 AGGCAAGGCTGGTGTATTCGATCTGCTTCACTGTCGGTGCAGGA
1 AGGCAAGGCTGGTGT-TTCGATCTGCTTCACTGTCAGTGCAGGA
16029886 AGGCAAG
1 AGGCAAG
16029893 ATCTGCTATT
Statistics
Matches: 119, Mismatches: 54, Indels: 20
0.62 0.28 0.10
Matches are distributed among these distances:
43 29 0.24
44 59 0.50
45 31 0.26
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.27
Consensus pattern (43 bp):
AGGCAAGGCTGGTGTTTCGATCTGCTTCACTGTCAGTGCAGGA
Found at i:16029766 original size:88 final size:88
Alignment explanation
Indices: 16029594--16030260 Score: 915
Period size: 88 Copynumber: 7.5 Consensus size: 88
16029584 GCTGGGGTAA
** * * * * *
16029594 TCGATCTATTTCGCTGTTGGTGCAGGAAGGCAAGATCTACTATTTTTTAACCTGCTCCACTACAA
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTA-TTTTTAGCCTGCTCCGCTGCAA
16029659 CCC-AGAGAGGCAAGGCTGGTGTCT
65 CCCAAG-GAGGCAAGGCTGGTGTCT
* * * * *
16029683 TCGATCTGCTTCACTGTCAGTGCAGGAAGGCAAGATTTGCTATTTTTAGCCTGCTCCACTGTAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAAC
*
16029748 CCAATGAGGCAAGGCTGGTGTCT
66 CCAAGGAGGCAAGGCTGGTGTCT
* *
16029771 TCGATCTGCTTCGCTGTCGGTGCAAGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTACAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAAC
* *
16029836 CCAGGGAGGCAAGGCTGGTGTAT
66 CCAAGGAGGCAAGGCTGGTGTCT
* *
16029859 TCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTTTAGCCTACTCCGCTGCA
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTA--TTTTTAGCCTGCTCCGCTGCA
*
16029924 ACCCAAGG-GGCAAGGCAGGTGTCT
64 ACCCAAGGAGGCAAGGCTGGTGTCT
* *
16029948 TCGATCTGCTTCGCTGTCGGTGTAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCAGCTGCAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAAC
*
16030013 CCATGGAGGCAAGGCTGGTGTCT
66 CCAAGGAGGCAAGGCTGGTGTCT
* * * *
16030036 TCAATCTGCTTCGCTGTCGGTGCAGGAAGGAAAGATTTGCTATTTTTAGCCTGCTTCGCTGCAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAAC
*
16030101 CCAGGGAGGCAAGGCTGGTGTCT
66 CCAAGGAGGCAAGGCTGGTGTCT
* * * * * * *
16030124 TTGATCTGCTTCGCTGTCGGTGCAAGAAGGTAAGATTTGTTATTTTTTAGCTTGCTCTGCTGCAA
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTA-TTTTTAGCCTGCTCCGCTGCAA
* * *
16030189 CCCAGGGAGGTAAGGCTGGTGTCC
65 CCCAAGGAGGCAAGGCTGGTGTCT
* *
16030213 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGAAAGATCCGCTATTTTTA
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTA
16030261 CCGATCTGCT
Statistics
Matches: 516, Mismatches: 57, Indels: 11
0.88 0.10 0.02
Matches are distributed among these distances:
87 26 0.05
88 297 0.58
89 167 0.32
90 26 0.05
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.29
Consensus pattern (88 bp):
TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAAC
CCAAGGAGGCAAGGCTGGTGTCT
Found at i:16029947 original size:177 final size:176
Alignment explanation
Indices: 16029594--16030260 Score: 933
Period size: 177 Copynumber: 3.8 Consensus size: 176
16029584 GCTGGGGTAA
** * * * * *
16029594 TCGATCTATTTCGCTGTTGGTGCAGGAAGGCAAGATCTACTATTTTTTAACCTGCTCCACTACAA
1 TCGATCTGCTTCGCTGTCGGTGCAAGAAGGCAAGATCTGCTATTTTTTAGCCTGCTCCGCTACAA
* * * *
16029659 CCCAGAGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCAGTGCAGGAAGGCAAGATTTGCT
66 CCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGAAAGATCTGCT
* * *
16029724 ATTTTTAGCCTGCTCCACTGTAACCCAATGAGGCAAGGCTGGTGTCT
131 ATTTTTAGCCTGCTCCGCTGCAACCCAA-GGGGCAAGGCTGGTGTCT
16029771 TCGATCTGCTTCGCTGTCGGTGCAAGAAGGCAAGATCTGCTA-TTTTTAGCCTGCTCCGCTACAA
1 TCGATCTGCTTCGCTGTCGGTGCAAGAAGGCAAGATCTGCTATTTTTTAGCCTGCTCCGCTACAA
* *
16029835 CCCAGGGAGGCAAGGCTGGTGTATTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCT
66 CCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGAAAGATCTGCT
* *
16029900 ATTTTTTTAGCCTACTCCGCTGCAACCCAAGGGGCAAGGCAGGTGTCT
131 A--TTTTTAGCCTGCTCCGCTGCAACCCAAGGGGCAAGGCTGGTGTCT
* * * *
16029948 TCGATCTGCTTCGCTGTCGGTGTAGGAAGGCAAGATCTGCTA-TTTTTAGCCTGCTCAGCTGCAA
1 TCGATCTGCTTCGCTGTCGGTGCAAGAAGGCAAGATCTGCTATTTTTTAGCCTGCTCCGCTACAA
* * * *
16030012 CCCATGGAGGCAAGGCTGGTGTCTTCAATCTGCTTCGCTGTCGGTGCAGGAAGGAAAGATTTGCT
66 CCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGAAAGATCTGCT
* *
16030077 ATTTTTAGCCTGCTTCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCT
131 ATTTTTAGCCTGCTCCGCTGCAACCCAAGG-GGCAAGGCTGGTGTCT
* * * * * * *
16030124 TTGATCTGCTTCGCTGTCGGTGCAAGAAGGTAAGATTTGTTATTTTTTAGCTTGCTCTGCTGCAA
1 TCGATCTGCTTCGCTGTCGGTGCAAGAAGGCAAGATCTGCTATTTTTTAGCCTGCTCCGCTACAA
* * * *
16030189 CCCAGGGAGGTAAGGCTGGTGTCCTCGATCTGCTTCGCTGTCGGTGCAGGAAGGAAAGATCCGCT
66 CCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGAAAGATCTGCT
16030254 ATTTTTA
131 ATTTTTA
16030261 CCGATCTGCT
Statistics
Matches: 442, Mismatches: 44, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
175 26 0.06
176 133 0.30
177 259 0.59
178 24 0.05
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.29
Consensus pattern (176 bp):
TCGATCTGCTTCGCTGTCGGTGCAAGAAGGCAAGATCTGCTATTTTTTAGCCTGCTCCGCTACAA
CCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGAAAGATCTGCT
ATTTTTAGCCTGCTCCGCTGCAACCCAAGGGGCAAGGCTGGTGTCT
Found at i:16030045 original size:265 final size:264
Alignment explanation
Indices: 16029583--16030260 Score: 964
Period size: 265 Copynumber: 2.6 Consensus size: 264
16029573 AGGGAGATAG
* * ** * * *
16029583 GGCTGGGGTAATCGATCTATTTCGCTGTTGGTGCAGGAAGGCAAGATCTACTATTTTTTAACCTG
1 GGCTGGTGTATTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTTAGCCTG
* * * * *
16029648 CTCCACTACAACCCAGAGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCAGTGCAGGAAGG
66 CTCCGCTGCAACCCA-AGGGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGG
* * *
16029713 CAAGATTTGCTATTTTTAGCCTGCTCCACTGTAACCCAATGAGGCAAGGCTGGTGTCTTCGATCT
130 CAAGATCTGCTATTTTTAGCCTGCTCCACTGCAACCCAATGAGGCAAGGCTGGTGTCTTCAATCT
*
16029778 GCTTCGCTGTCGGTGCAAGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTACAACCCAGGGA
195 GCTTCGCTGTCGGTGCAAGAAGGAAAGATCTGCTATTTTTAGCCTGCTCCGCTACAACCCAGGGA
16029843 GGCAA
260 GGCAA
*
16029848 GGCTGGTGTATTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTTTAGCCT
1 GGCTGGTGTATTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTA-TTTTTTAGCCT
* * *
16029913 ACTCCGCTGCAACCCAAGGGGCAAGGCAGGTGTCTTCGATCTGCTTCGCTGTCGGTGTAGGAAGG
65 GCTCCGCTGCAACCCAAGGGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGG
16029978 CAAGATCTGCTATTTTTAGCCTGCT-CAGCTGCAACCC-ATGGAGGCAAGGCTGGTGTCTTCAAT
130 CAAGATCTGCTATTTTTAGCCTGCTCCA-CTGCAACCCAAT-GAGGCAAGGCTGGTGTCTTCAAT
* * * *
16030041 CTGCTTCGCTGTCGGTGCAGGAAGGAAAGATTTGCTATTTTTAGCCTGCTTCGCTGCAACCCAGG
193 CTGCTTCGCTGTCGGTGCAAGAAGGAAAGATCTGCTATTTTTAGCCTGCTCCGCTACAACCCAGG
16030106 GAGGCAA
258 GAGGCAA
* * * * * * *
16030113 GGCTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAAGAAGGTAAGATTTGTTATTTTTTAGCTTG
1 GGCTGGTGTATTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTTAGCCTG
* * * *
16030178 CTCTGCTGCAACCCAGGGAGGTAAGGCTGGTGTCCTCGATCTGCTTCGCTGTCGGTGCAGGAAGG
66 CTCCGCTGCAACCCAAGG-GGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGG
* *
16030243 AAAGATCCGCTATTTTTA
130 CAAGATCTGCTATTTTTA
16030261 CCGATCTGCT
Statistics
Matches: 368, Mismatches: 41, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
264 30 0.08
265 315 0.86
266 23 0.06
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (264 bp):
GGCTGGTGTATTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTTAGCCTG
CTCCGCTGCAACCCAAGGGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGC
AAGATCTGCTATTTTTAGCCTGCTCCACTGCAACCCAATGAGGCAAGGCTGGTGTCTTCAATCTG
CTTCGCTGTCGGTGCAAGAAGGAAAGATCTGCTATTTTTAGCCTGCTCCGCTACAACCCAGGGAG
GCAA
Found at i:16031697 original size:29 final size:29
Alignment explanation
Indices: 16031655--16031713 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
16031645 GAGATGAAGT
*
16031655 TCTTCTTGTATAGAAAGGCTATTCTTCAA
1 TCTTCTTGTATAGAAAGGATATTCTTCAA
16031684 TCTTCTTGTATAGAAAGGATATTCTTCAA
1 TCTTCTTGTATAGAAAGGATATTCTTCAA
16031713 T
1 T
16031714 ATGAGGTCCC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.29, C:0.15, G:0.14, T:0.42
Consensus pattern (29 bp):
TCTTCTTGTATAGAAAGGATATTCTTCAA
Found at i:16037841 original size:21 final size:19
Alignment explanation
Indices: 16037804--16037878 Score: 114
Period size: 19 Copynumber: 3.8 Consensus size: 19
16037794 AATCATATCT
16037804 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
16037823 TCCAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
*
16037844 TTTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
16037863 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
16037879 CTCGAAGATT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 33 0.66
21 17 0.34
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:16040976 original size:29 final size:29
Alignment explanation
Indices: 16040917--16040976 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
16040907 TATGGTTTAA
*
16040917 TGTGCAATTGTATACATAAACTTTGATTT
1 TGTGCAATTGTATACATAAACTTTGAGTT
* * *
16040946 TGTGTAATTTTATACATGAAA-TTTTAGTT
1 TGTGCAATTGTATACAT-AAACTTTGAGTT
16040975 TG
1 TG
16040977 ATCCAATTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
29 23 0.88
30 3 0.12
ACGTcount: A:0.30, C:0.07, G:0.15, T:0.48
Consensus pattern (29 bp):
TGTGCAATTGTATACATAAACTTTGAGTT
Found at i:16046872 original size:114 final size:113
Alignment explanation
Indices: 16046444--16047123 Score: 871
Period size: 113 Copynumber: 6.0 Consensus size: 113
16046434 AAAATAAGCA
** * *
16046444 TTAGCGGCGTTTTCCAGAAAGCGCCAC-AAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTT-TGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTT
* * * * *
16046508 TCGGGGGTTTCGCGGCGGTTTTAAGAAAGCGCCGCTAATGCTCAAGTAT
65 TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGTCT
* * * *
16046557 TTAGCTGCGTTTTTGGGAAAGCGCCGCAAAAAAAACCTATGCCCAACGACACTATTTTCTGAGCT
1 TTAGCGGCGTTTTT-GGAAAGCGCCGC-AAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCT
* * *
16046622 TTCGGGGATTTAACGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAGGTCC
64 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGTCT
* * *
16046672 TTAGCGGTGTTTTTAGGAAAGCGCCGC-AAAAAACCTAAGCCCAACGACGCCGTTTACTGAGCTT
1 TTAGCGGCGTTTTT-GGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTT
* * * *
16046736 TCGGCGATTTAGTGGCGTTTTTAAGAATA-CGCCGCTAATTCTTAGGTCT
65 TCGGGGATTTAGCGGCGTTTTTAAGAA-AGCGCCGCTAATGCTCAGGTCT
* * * *
16046785 TTAGCGACGTTTTTGGTAAAGCGCCACAAAAAAACCTAAGCCCAATGACGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGG-AAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTT
* * *
16046850 TCAGAGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAAGTCT
65 TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGTCT
* *
16046899 TTAGTGGCGTTTTTGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTAAGCTTT
1 TTAGCGGCGTTTTTGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTTT
* * * **
16046964 CGGGGATTTAGCGACGTCTTGTAAGAAAGCGCCGCTAATTCTCAGGGAT
66 CGGGGATTTAGCGGCGT-TTTTAAGAAAGCGCCGCTAATGCTCAGGTCT
* * * *
16047013 TTAGTGGCGTTGTTGGTAAAGCGCCGCAAAAAAACCTAAACCCAATGACGCCATTTTCTGAGCTT
1 TTAGCGGCGTTTTTGG-AAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTT
* * *
16047078 TCGGGGATTTAGTGGCGTTTTTAAGAATGTGCCGCTAATGCTCAGG
65 TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGG
16047124 GATTTAAAAT
Statistics
Matches: 492, Mismatches: 66, Indels: 17
0.86 0.11 0.03
Matches are distributed among these distances:
112 2 0.00
113 175 0.36
114 156 0.32
115 159 0.32
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (113 bp):
TTAGCGGCGTTTTTGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTTT
CGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGTCT
Found at i:16047089 original size:228 final size:226
Alignment explanation
Indices: 16046444--16047121 Score: 914
Period size: 228 Copynumber: 3.0 Consensus size: 226
16046434 AAAATAAGCA
* *
16046444 TTAGCGGCGTTTTCCA-GAAAGCGCCACAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTT-TAGGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* * * *
16046508 TCGGGGGTTTCGCGGCGGTTTTAAGAAAGCGCCGCTAATGCTCAAGTATTTAGCT-GCGTTTTTG
65 TCGGGGATTTAGCGGC-GTTTTAAGAAAGCGCCGCTAATTCTCAGGTATTTAG-TGGCGTTTTTG
* * * * * *
16046572 GGAAAGCGCCGCAAAAAAAACCTATGCCCAACGACACTATTTTCTGAGCTTTCGGGGATTTAACG
128 GTAAAGCGCCGC-AAAAAAACCTAAGCCCAATGACGCCATTTTCTGAGCTTTCGGGGATTTAGCG
* *
16046637 GCGTTTTTAAGGAAGCGCCGCTAATGCTCAGGTCC
192 GCGTTTTTAAGAAAGCGCCGCTAATGCTCAAGTCC
* *
16046672 TTAGCGGTGTTTTTAGGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTACTGAGCTTT
1 TTAGCGGCGTTTTTAGGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTT
* * * * * *
16046737 CGGCGATTTAGTGGCGTTTTTAAGAATA-CGCCGCTAATTCTTAGGTCTTTAGCGACGTTTTTGG
66 CGGGGATTTAGCGGCG-TTTTAAGAA-AGCGCCGCTAATTCTCAGGTATTTAGTGGCGTTTTTGG
* * * *
16046801 TAAAGCGCCACAAAAAAACCTAAGCCCAATGACGCCGTTTTCTGAGCTTTCAGAGATTTAGCGGC
129 TAAAGCGCCGCAAAAAAACCTAAGCCCAATGACGCCATTTTCTGAGCTTTCGGGGATTTAGCGGC
*
16046866 GTTTTTAAGAAAGCGCCGCTAATGCTCAAGTCT
194 GTTTTTAAGAAAGCGCCGCTAATGCTCAAGTCC
* * *
16046899 TTAGTGGCGTTTTT-GGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTAAGCTT
1 TTAGCGGCGTTTTTAGGAAAGCGCCGC-AAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* * *
16046963 TCGGGGATTTAGCGACGTCTTGTAAGAAAGCGCCGCTAATTCTCAGGGATTTAGTGGCGTTGTTG
65 TCGGGGATTTAGCGGCGT-TT-TAAGAAAGCGCCGCTAATTCTCAGGTATTTAGTGGCGTTTTTG
* *
16047028 GTAAAGCGCCGCAAAAAAACCTAAACCCAATGACGCCATTTTCTGAGCTTTCGGGGATTTAGTGG
128 GTAAAGCGCCGCAAAAAAACCTAAGCCCAATGACGCCATTTTCTGAGCTTTCGGGGATTTAGCGG
* *
16047093 CGTTTTTAAGAATGTGCCGCTAATGCTCA
193 CGTTTTTAAGAAAGCGCCGCTAATGCTCA
16047122 GGGATTTAAA
Statistics
Matches: 393, Mismatches: 49, Indels: 16
0.86 0.11 0.03
Matches are distributed among these distances:
226 13 0.03
227 141 0.36
228 238 0.61
229 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (226 bp):
TTAGCGGCGTTTTTAGGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTT
CGGGGATTTAGCGGCGTTTTAAGAAAGCGCCGCTAATTCTCAGGTATTTAGTGGCGTTTTTGGTA
AAGCGCCGCAAAAAAACCTAAGCCCAATGACGCCATTTTCTGAGCTTTCGGGGATTTAGCGGCGT
TTTTAAGAAAGCGCCGCTAATGCTCAAGTCC
Found at i:16047370 original size:15 final size:15
Alignment explanation
Indices: 16047352--16047400 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
16047342 TACCATTTTA
16047352 AGGTTTATGGATTAT
1 AGGTTTATGGATTAT
* *
16047367 AGGTTTAGGGGTTAT
1 AGGTTTATGGATTAT
* *
16047382 -GGTTTATGGTTTAA
1 AGGTTTATGGATTAT
16047396 AGGTT
1 AGGTT
16047401 GGGGTTTAAG
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
14 11 0.39
15 17 0.61
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.45
Consensus pattern (15 bp):
AGGTTTATGGATTAT
Found at i:16047419 original size:8 final size:7
Alignment explanation
Indices: 16047348--16047487 Score: 54
Period size: 7 Copynumber: 19.6 Consensus size: 7
16047338 GTGTTACCAT
16047348 TTTAAGG
1 TTTAAGG
*
16047355 TTTATGG
1 TTTAAGG
*
16047362 ATTATAGG
1 TTTA-AGG
*
16047370 TTTAGGG
1 TTTAAGG
* *
16047377 GTTATGG
1 TTTAAGG
*
16047384 TTTATGG
1 TTTAAGG
16047391 TTTAAAGG
1 TTT-AAGG
**
16047399 -TTGGGG
1 TTTAAGG
16047405 TTTAAGG
1 TTTAAGG
16047412 TTTAAAGG
1 TTT-AAGG
**
16047420 -TT-ATT
1 TTTAAGG
16047425 TGTTAAGGG
1 T-TTAA-GG
*
16047434 TTTAGGGG
1 TTTA-AGG
*
16047442 TTTAGGG
1 TTTAAGG
*
16047449 TTTTAGGG
1 -TTTAAGG
16047457 TTTAA-G
1 TTTAAGG
*
16047463 TTTATGG
1 TTTAAGG
*
16047470 TTTATGG
1 TTTAAGG
16047477 TTTAAGG
1 TTTAAGG
16047484 TTTA
1 TTTA
16047488 GATTAACTAG
Statistics
Matches: 101, Mismatches: 21, Indels: 22
0.70 0.15 0.15
Matches are distributed among these distances:
5 1 0.01
6 7 0.07
7 63 0.62
8 29 0.29
9 1 0.01
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.46
Consensus pattern (7 bp):
TTTAAGG
Found at i:16047471 original size:21 final size:21
Alignment explanation
Indices: 16047348--16047488 Score: 74
Period size: 21 Copynumber: 6.6 Consensus size: 21
16047338 GTGTTACCAT
*
16047348 TTTAAGGTTTATGGATTATA-GG
1 TTTAAGGTTTA-GGGTT-TAGGG
* * * *
16047370 TTTAGGGGTTATGGTTTATGG
1 TTTAAGGTTTAGGGTTTAGGG
* *
16047391 TTTAAAGG-TTGGGGTTTAAGG
1 TTT-AAGGTTTAGGGTTTAGGG
** *
16047412 TTTAAAGG-TTATTTGTTAAGGG
1 TTT-AAGGTTTA-GGGTTTAGGG
*
16047434 TTTAGGGGTTTAGGGTTTTAGGG
1 TTTA-AGGTTTAGGG-TTTAGGG
* *
16047457 TTTAA-GTTTATGGTTTATGG
1 TTTAAGGTTTAGGGTTTAGGG
16047477 TTTAAGGTTTAG
1 TTTAAGGTTTAG
16047489 ATTAACTAGT
Statistics
Matches: 91, Mismatches: 21, Indels: 15
0.72 0.17 0.12
Matches are distributed among these distances:
20 13 0.14
21 41 0.45
22 24 0.26
23 13 0.14
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.46
Consensus pattern (21 bp):
TTTAAGGTTTAGGGTTTAGGG
Found at i:16047815 original size:14 final size:14
Alignment explanation
Indices: 16047755--16047818 Score: 65
Period size: 14 Copynumber: 4.5 Consensus size: 14
16047745 GGATTTAAGG
*
16047755 TTTAGGGGTTAGTA
1 TTTAGGGGTTAGGA
* *
16047769 GTTAGGGGTTAAGA
1 TTTAGGGGTTAGGA
* * *
16047783 GTTAAGAGTTAGTGA
1 TTTAGGGGTTAG-GA
16047798 TTTAGGGGTTAGGA
1 TTTAGGGGTTAGGA
16047812 TTTAGGG
1 TTTAGGG
16047819 ATTTAAGGGT
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
14 29 0.73
15 11 0.28
ACGTcount: A:0.25, C:0.00, G:0.39, T:0.36
Consensus pattern (14 bp):
TTTAGGGGTTAGGA
Found at i:16048472 original size:20 final size:20
Alignment explanation
Indices: 16048447--16048490 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 20
16048437 GGATATGATC
16048447 AAAATATAAGAAA-AAATAAA
1 AAAATATAA-AAAGAAATAAA
16048467 AAAATATAAAAATGAAATAAA
1 AAAATATAAAAA-GAAATAAA
16048488 AAA
1 AAA
16048491 CTAAAATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.16
Consensus pattern (20 bp):
AAAATATAAAAAGAAATAAA
Found at i:16052346 original size:23 final size:21
Alignment explanation
Indices: 16052307--16052376 Score: 79
Period size: 21 Copynumber: 3.2 Consensus size: 21
16052297 CTACAACTTA
*
16052307 AAGCAGAGGCGGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
16052328 AAGCAGCA-GCTGCGCAGCGAGGG
1 AAGCAG-AGGCT--GCAGCGAGGG
* *
16052351 AAACAGAGGCTGCAGCGAGAG
1 AAGCAGAGGCTGCAGCGAGGG
16052372 AAGCA
1 AAGCA
16052377 AAGCAGAGCA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
21 21 0.51
22 2 0.05
23 18 0.44
ACGTcount: A:0.33, C:0.21, G:0.43, T:0.03
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGGG
Found at i:16054125 original size:20 final size:20
Alignment explanation
Indices: 16054102--16054147 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
16054092 TGTTAATATT
*
16054102 TTGTTATTTATTCAAATAGG
1 TTGTTACTTATTCAAATAGG
*
16054122 TTGTTACTTATTTAAATAGG
1 TTGTTACTTATTCAAATAGG
16054142 TTGTTA
1 TTGTTA
16054148 AGCTTTACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.28, C:0.04, G:0.15, T:0.52
Consensus pattern (20 bp):
TTGTTACTTATTCAAATAGG
Found at i:16058623 original size:20 final size:20
Alignment explanation
Indices: 16058600--16058645 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
16058590 TGTTAATATT
*
16058600 TTGTTATTTATTCAAATAGG
1 TTGTTACTTATTCAAATAGG
*
16058620 TTGTTACTTATTTAAATAGG
1 TTGTTACTTATTCAAATAGG
16058640 TTGTTA
1 TTGTTA
16058646 AGCTTTACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.28, C:0.04, G:0.15, T:0.52
Consensus pattern (20 bp):
TTGTTACTTATTCAAATAGG
Found at i:16059867 original size:9 final size:9
Alignment explanation
Indices: 16059814--16059841 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
16059804 AATAATATCA
16059814 TTTATTAAT
1 TTTATTAAT
16059823 TTTATTAAT
1 TTTATTAAT
16059832 TTTATTAAT
1 TTTATTAAT
16059841 T
1 T
16059842 AATTAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTATTAAT
Found at i:16065204 original size:13 final size:13
Alignment explanation
Indices: 16065186--16065212 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
16065176 CACAAACGAT
16065186 AAAATTTTCACAC
1 AAAATTTTCACAC
16065199 AAAATTTTCACAC
1 AAAATTTTCACAC
16065212 A
1 A
16065213 TATTAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:16072121 original size:4 final size:4
Alignment explanation
Indices: 16072112--16072160 Score: 98
Period size: 4 Copynumber: 12.2 Consensus size: 4
16072102 GCCATTTTTT
16072112 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
16072160 T
1 T
16072161 TTCTGATTTC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 45 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:16077149 original size:3 final size:3
Alignment explanation
Indices: 16077141--16077165 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
16077131 TTTATTCCAA
16077141 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
16077166 TACAAAAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:16080113 original size:21 final size:21
Alignment explanation
Indices: 16080084--16080142 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
16080074 AAAAGCTACA
16080084 GAATTCTATCGGTAGAACTGG
1 GAATTCTATCGGTAGAACTGG
* * * * *
16080105 GAGTTCTATTGATACAACTTG
1 GAATTCTATCGGTAGAACTGG
16080126 GAATTCTATCGGTAGAA
1 GAATTCTATCGGTAGAA
16080143 TGTACTCCAG
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.32
Consensus pattern (21 bp):
GAATTCTATCGGTAGAACTGG
Found at i:16083090 original size:42 final size:42
Alignment explanation
Indices: 16083018--16083210 Score: 201
Period size: 42 Copynumber: 4.6 Consensus size: 42
16083008 TCGAAAGCTG
* * ** * *
16083018 AACAGAAGCTCATGAGAGCT-AAATAGAAACCCATAAGGGTTG
1 AACAGAAGCTCATAAAAGCTGAACGA-AAACCCATAAGAGTTA
* *
16083060 AACAGAAGCTCGTAAAAGCTGAACGAAAACCCATATGAGTTA
1 AACAGAAGCTCATAAAAGCTGAACGAAAACCCATAAGAGTTA
* *
16083102 AACAGAAGCTCATAAAAGCTGAACAAAAACTCATAAGAGTTA
1 AACAGAAGCTCATAAAAGCTGAACGAAAACCCATAAGAGTTA
* * * *
16083144 AACAGAAGCTTA-AAAGAGCTGAATGAAAACTCATATGAGTTA
1 AACAGAAGCTCATAAA-AGCTGAACGAAAACCCATAAGAGTTA
* * *
16083186 AATAGAAGCTCATAAGAGCTAAACG
1 AACAGAAGCTCATAAAAGCTGAACG
16083211 GAAAGTAAAA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
41 3 0.02
42 119 0.94
43 5 0.04
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.18
Consensus pattern (42 bp):
AACAGAAGCTCATAAAAGCTGAACGAAAACCCATAAGAGTTA
Found at i:16083164 original size:84 final size:83
Alignment explanation
Indices: 16083018--16083209 Score: 251
Period size: 84 Copynumber: 2.3 Consensus size: 83
16083008 TCGAAAGCTG
* * * * *
16083018 AACAGAAGCTCATGAGAGCTAAATAGAAACCCATAAGGGTTGAACAGAAGCTCGTAAAAGCTGAA
1 AACAGAAGCTCATAAGAGCTAAACAAAAACCCATAAGAGTTAAACAGAAGCTC-TAAAAGCTGAA
16083083 CGAAAACCCATATGAGTTA
65 CGAAAACCCATATGAGTTA
* * *
16083102 AACAGAAGCTCATAAAAGCTGAACAAAAACTCATAAGAGTTAAACAGAAGCT-TAAAAGAGCTGA
1 AACAGAAGCTCATAAGAGCTAAACAAAAACCCATAAGAGTTAAACAGAAGCTCT-AAA-AGCTGA
* *
16083166 ATGAAAACTCATATGAGTTA
64 ACGAAAACCCATATGAGTTA
*
16083186 AATAGAAGCTCATAAGAGCTAAAC
1 AACAGAAGCTCATAAGAGCTAAAC
16083210 GGAAAGTAAA
Statistics
Matches: 93, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
82 1 0.01
83 3 0.03
84 89 0.96
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.18
Consensus pattern (83 bp):
AACAGAAGCTCATAAGAGCTAAACAAAAACCCATAAGAGTTAAACAGAAGCTCTAAAAGCTGAAC
GAAAACCCATATGAGTTA
Found at i:16083199 original size:21 final size:21
Alignment explanation
Indices: 16082999--16083209 Score: 115
Period size: 21 Copynumber: 10.1 Consensus size: 21
16082989 GTACATCGTT
* *
16082999 AACAGAAGCTC-GAA-AGCTG
1 AACAGAAGCTCATAAGAGCTA
*
16083018 AACAGAAGCTCATGAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
* * * * * *
16083039 AATAGAAACCCATAAGGGTTG
1 AACAGAAGCTCATAAGAGCTA
* * *
16083060 AACAGAAGCTCGTAAAAGCTG
1 AACAGAAGCTCATAAGAGCTA
* * * *
16083081 AAC-GAAAACCCATATGAGTTA
1 AACAG-AAGCTCATAAGAGCTA
* *
16083102 AACAGAAGCTCATAAAAGCTG
1 AACAGAAGCTCATAAGAGCTA
* * *
16083123 AACAAAAACTCATAAGAGTTA
1 AACAGAAGCTCATAAGAGCTA
* * *
16083144 AACAGAAGCTTAAAAGAGCTG
1 AACAGAAGCTCATAAGAGCTA
* * * *
16083165 AA-TGAAAACTCATATGAGTTA
1 AACAG-AAGCTCATAAGAGCTA
*
16083186 AATAGAAGCTCATAAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
16083207 AAC
1 AAC
16083210 GGAAAGTAAA
Statistics
Matches: 133, Mismatches: 53, Indels: 10
0.68 0.27 0.05
Matches are distributed among these distances:
19 11 0.08
20 3 0.02
21 117 0.88
22 2 0.02
ACGTcount: A:0.47, C:0.17, G:0.19, T:0.17
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTA
Found at i:16085050 original size:232 final size:232
Alignment explanation
Indices: 16084644--16085099 Score: 788
Period size: 232 Copynumber: 2.0 Consensus size: 232
16084634 GGTTGTTACA
* *
16084644 CTCTTGGTGTATTTCGATCTTAACAATTGGTATCGGAGCTAGAACTCTAGAGACAATTTTACCAC
1 CTCTTGGTGTATTTCGATCTTAACAATTGGTATCGAAACTAGAACTCTAGAGACAATTTTACCAC
* * * *
16084709 CAAGAGAGAAGATATTCAAGATATCAAGATGGAAGCCATAAGTTAAGAAATTTGCTTCATGGCAT
66 CAAGAGAGAAGATACTCAAGATATCAAAATGGAAGCCATAAGTCAAGAAATTTACTTCATGGCAT
*
16084774 TGGAGCAAAATTCCACCATATTAGGAGAAGGGCATTCCACCATGAGGCCTCATTTATTCAATGGC
131 TGGAGAAAAATTCCACCATATTAGGAGAAGGGCATTCCACCATGAGGCCTCATTTATTCAATGGC
* *
16084839 A-CTAACTACTTATATTGGAGAACAAGAATTTACCCCT
196 ATC-AACTACTCATATTAGAGAACAAGAATTTACCCCT
*
16084876 CTCTTGGTGTATTTCGATCTTAACAATTGGTATCGAAACTAGAACTCTAGAGACGATTTTACCAC
1 CTCTTGGTGTATTTCGATCTTAACAATTGGTATCGAAACTAGAACTCTAGAGACAATTTTACCAC
* *
16084941 CAAGAGAGAAGATCCTCAAGATATCAAAATGGAAGCTATAAGTCAAGAAATTTACTTCATGGCAT
66 CAAGAGAGAAGATACTCAAGATATCAAAATGGAAGCCATAAGTCAAGAAATTTACTTCATGGCAT
16085006 TGGAGAAAAATTCCACCATATTAGGAGAAGGGCATTCCACCATGAGGCCTCATTTATTCAATGGC
131 TGGAGAAAAATTCCACCATATTAGGAGAAGGGCATTCCACCATGAGGCCTCATTTATTCAATGGC
16085071 ATCAACTACTCATATTAGAGAACAAGAAT
196 ATCAACTACTCATATTAGAGAACAAGAAT
16085100 AAAGTTATTC
Statistics
Matches: 211, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
232 210 1.00
233 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.27
Consensus pattern (232 bp):
CTCTTGGTGTATTTCGATCTTAACAATTGGTATCGAAACTAGAACTCTAGAGACAATTTTACCAC
CAAGAGAGAAGATACTCAAGATATCAAAATGGAAGCCATAAGTCAAGAAATTTACTTCATGGCAT
TGGAGAAAAATTCCACCATATTAGGAGAAGGGCATTCCACCATGAGGCCTCATTTATTCAATGGC
ATCAACTACTCATATTAGAGAACAAGAATTTACCCCT
Found at i:16091010 original size:23 final size:21
Alignment explanation
Indices: 16090958--16091022 Score: 71
Period size: 22 Copynumber: 3.1 Consensus size: 21
16090948 TTCAAGGATA
*
16090958 TGCAATCTT--AGATATAATA
1 TGCAATCTTAGAGATATAATT
16090977 TGCAATCTTAGAAGATATAATT
1 TGCAATCTTAG-AGATATAATT
* *
16090999 TCGTAATCTTAGAGATTTAATT
1 T-GCAATCTTAGAGATATAATT
16091021 TG
1 TG
16091023 TAGATACCCT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
19 9 0.23
21 1 0.03
22 20 0.51
23 9 0.23
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.40
Consensus pattern (21 bp):
TGCAATCTTAGAGATATAATT
Found at i:16091259 original size:23 final size:23
Alignment explanation
Indices: 16091215--16091259 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
16091205 TCTTATTTTG
* *
16091215 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
16091238 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
16091260 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:16091617 original size:36 final size:37
Alignment explanation
Indices: 16091542--16091617 Score: 93
Period size: 36 Copynumber: 2.1 Consensus size: 37
16091532 CATACATACG
* *
16091542 TTTTATAATATATACATATACATACACATTTTTTAAT
1 TTTTATAATATATACATATACACACACATTTTATAAT
* *
16091579 TTTTATAA-ATATATATATACACATAC-TTTTATATAT
1 TTTTATAATATATACATATACACACACATTTTATA-AT
16091615 TTT
1 TTT
16091618 CTATGTTTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
35 6 0.18
36 20 0.59
37 8 0.24
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.51
Consensus pattern (37 bp):
TTTTATAATATATACATATACACACACATTTTATAAT
Found at i:16102648 original size:29 final size:30
Alignment explanation
Indices: 16102585--16102652 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
16102575 AATAGACTTG
*
16102585 AATTTTAAAATATAAAAAGTAAAAAGACTA
1 AATTCTAAAATATAAAAAGTAAAAAGACTA
*
16102615 AATTCCTAAAA-ATAAAAA-TACAAAA-ACTT
1 AATT-CTAAAATATAAAAAGTA-AAAAGACTA
16102644 AATTCTAAA
1 AATTCTAAA
16102653 TTTACAAAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
28 5 0.15
29 9 0.26
30 15 0.44
31 5 0.15
ACGTcount: A:0.62, C:0.09, G:0.03, T:0.26
Consensus pattern (30 bp):
AATTCTAAAATATAAAAAGTAAAAAGACTA
Found at i:16103357 original size:21 final size:19
Alignment explanation
Indices: 16103332--16103371 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
16103322 GAAATAGAAG
16103332 AGAATGAAAAAAAAAGTTAAA
1 AGAAT-AAAAAAAAA-TTAAA
*
16103353 AGAATATAAAAAAATTAAA
1 AGAATAAAAAAAAATTAAA
16103372 TTGCTCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 8 0.44
21 5 0.28
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.17
Consensus pattern (19 bp):
AGAATAAAAAAAAATTAAA
Found at i:16114608 original size:19 final size:19
Alignment explanation
Indices: 16114584--16114620 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
16114574 GTTAACGAGT
*
16114584 TCTATTTTATTATTTTAAC
1 TCTATTTGATTATTTTAAC
*
16114603 TCTATTTGATTTTTTTAA
1 TCTATTTGATTATTTTAA
16114621 TTGAATGAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.24, C:0.08, G:0.03, T:0.65
Consensus pattern (19 bp):
TCTATTTGATTATTTTAAC
Found at i:16121303 original size:18 final size:17
Alignment explanation
Indices: 16121282--16121316 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16121272 TTATTATTAA
*
16121282 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
16121300 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
16121317 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:16121408 original size:120 final size:120
Alignment explanation
Indices: 16121262--16121779 Score: 840
Period size: 120 Copynumber: 4.3 Consensus size: 120
16121252 TTAATCATAT
*
16121262 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
* * *
16121327 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* *
16121382 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
* * *
16121447 CAATATTCTTATATGAATTTACTAAAATTATAATATATGATACTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * *
16121502 TTTGAAATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATATT
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
* *
16121567 AAATATTCTTATATGAATTTACTAAAATTATAATATATAATAGTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * * *
16121622 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTATTAATATT
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
16121687 AAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
66 -AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* *
16121743 TCTAAAATAATTATTATTAAATATAATTTAA-TAAAAT
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAAT
16121780 TCTTAATATT
Statistics
Matches: 379, Mismatches: 18, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
120 296 0.78
121 83 0.22
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (120 bp):
TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:16121423 original size:18 final size:17
Alignment explanation
Indices: 16121400--16121436 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
16121390 AATTATTATT
16121400 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
16121416 AAATATATGATTTAATA
1 AAATATATGATTTAATA
16121433 AAAT
1 AAAT
16121437 TCTTAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:16121543 original size:18 final size:17
Alignment explanation
Indices: 16121520--16121556 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
16121510 AATTATTATT
16121520 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
16121536 AAATATATGATTTAATA
1 AAATATATGATTTAATA
16121553 AAAT
1 AAAT
16121557 TCTTAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:16121665 original size:18 final size:18
Alignment explanation
Indices: 16121642--16121688 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
16121632 TTATTATTAA
16121642 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
*
16121660 ATATAATTTAATAAAATT
1 ATATAATTTAATAAAAAT
16121678 AT-TAATATTAA
1 ATATAAT-TTAA
16121689 AATATTCTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 4 0.15
18 23 0.85
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
ATATAATTTAATAAAAAT
Found at i:16121818 original size:102 final size:103
Alignment explanation
Indices: 16121660--16121856 Score: 378
Period size: 102 Copynumber: 1.9 Consensus size: 103
16121650 TAATAAAAAT
16121660 ATATAATTTAATAAAATTATTAATATTAAAATATTCTTATATGAATTTACTAAAATCATAATATA
1 ATATAATTTAATAAAATTATTAATATTAAAATATTCTTATATGAATTTACTAAAATCATAATATA
16121725 TAATACTATAAAATATAATCTAAAATAATTATTATTAA
66 TAATACTATAAAATATAATCTAAAATAATTATTATTAA
*
16121763 ATATAATTTAATAAAATTCTTAATATT-AAATATTCTTATATGAATTTACTAAAATCATAATATA
1 ATATAATTTAATAAAATTATTAATATTAAAATATTCTTATATGAATTTACTAAAATCATAATATA
16121827 TAATACTATAAAATATAATCTAAAATAATT
66 TAATACTATAAAATATAATCTAAAATAATT
16121857 GATTTTGTGG
Statistics
Matches: 93, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
102 67 0.72
103 26 0.28
ACGTcount: A:0.52, C:0.06, G:0.01, T:0.42
Consensus pattern (103 bp):
ATATAATTTAATAAAATTATTAATATTAAAATATTCTTATATGAATTTACTAAAATCATAATATA
TAATACTATAAAATATAATCTAAAATAATTATTATTAA
Found at i:16125388 original size:37 final size:37
Alignment explanation
Indices: 16125302--16125388 Score: 99
Period size: 37 Copynumber: 2.3 Consensus size: 37
16125292 AATGTACTCT
*
16125302 TTCATAATTTCACTTTTTCACTTTCAATCACAATTCAA
1 TTCA-AATTTCACTTTTACACTTTCAATCACAATTCAA
*
16125340 TTCAAAATTCACTTTTACA-TTTCTAAGTCA-ATATTCAA
1 TTCAAATTTCACTTTTACACTTTC-AA-TCACA-ATTCAA
16125378 TTC-AATTTCAC
1 TTCAAATTTCAC
16125389 ACCTCTATTC
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
36 4 0.09
37 23 0.53
38 16 0.37
ACGTcount: A:0.33, C:0.22, G:0.01, T:0.44
Consensus pattern (37 bp):
TTCAAATTTCACTTTTACACTTTCAATCACAATTCAA
Done.