Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 62 of 221
Found at i:17837139 original size:19 final size:20
Alignment explanation
Indices: 17837107--17837155 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
17837097 GGAAGAGAGT
17837107 AAAAGTTTTGGGGGAAAATA
1 AAAAGTTTTGGGGGAAAATA
17837127 AAAAGTTTTGGGGGAAAATA
1 AAAAGTTTTGGGGGAAAATA
17837147 AAAAGTTTT
1 AAAAGTTTT
17837156 AAGGGTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.27, T:0.29
Consensus pattern (20 bp):
AAAAGTTTTGGGGGAAAATA
Found at i:17837212 original size:96 final size:97
Alignment explanation
Indices: 17837045--17837223 Score: 231
Period size: 96 Copynumber: 1.9 Consensus size: 97
17837035 TATAAGGGAA
** *** * *
17837045 AAAATAAAAAGTTTTGGGGGTTTTTAGGGGAGTAAAATTTTAGTAGGAAAGTGGAAGAGAGTAAA
1 AAAATAAAAAGTTTTAAGGGTTTTTAACAGAGTAAAATTTTAGAAGGAAAGTGAAAGAGAGTAAA
*
17837110 AGTTTTG-GGGGAAAATAAAAAGTTTTGGGGG
66 AGTTTTGAAGGGAAAATAAAAAGTTTTGGGGG
17837141 AAAATAAAAAGTTTTAAGGGTTTTTAACAGAGTAAAATTTT-GAAGGAAAGT-AAATGGGAGAGT
1 AAAATAAAAAGTTTTAAGGGTTTTTAACAGAGTAAAATTTTAGAAGGAAAGTGAAA---GAGAGT
17837204 AAAA-TTTTGAAGGGAAAATA
63 AAAAGTTTTGAAGGGAAAATA
17837224 TTCAAAAAAT
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
94 2 0.03
95 9 0.13
96 41 0.58
97 19 0.27
ACGTcount: A:0.43, C:0.01, G:0.28, T:0.28
Consensus pattern (97 bp):
AAAATAAAAAGTTTTAAGGGTTTTTAACAGAGTAAAATTTTAGAAGGAAAGTGAAAGAGAGTAAA
AGTTTTGAAGGGAAAATAAAAAGTTTTGGGGG
Found at i:17837800 original size:17 final size:17
Alignment explanation
Indices: 17837761--17837820 Score: 52
Period size: 17 Copynumber: 3.4 Consensus size: 17
17837751 TTTACGTTTA
*
17837761 ATAACTAAAATTAAATT
1 ATAATTAAAATTAAATT
*
17837778 ATAATTAAATTTAAA-T
1 ATAATTAAAATTAAATT
17837794 ATCAATTAATAGATATAAATT
1 AT-AATTAA-A-AT-TAAATT
17837815 A-AATTA
1 ATAATTA
17837821 TGATAATACT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
16 3 0.09
17 19 0.54
18 1 0.03
19 6 0.17
20 4 0.11
21 2 0.06
ACGTcount: A:0.57, C:0.03, G:0.02, T:0.38
Consensus pattern (17 bp):
ATAATTAAAATTAAATT
Found at i:17839655 original size:25 final size:24
Alignment explanation
Indices: 17839625--17839684 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 24
17839615 TGTATGCAAA
*
17839625 ATATCATAATC-AATCATAGTCATAC
1 ATATCATAAGCAAATC--AGTCATAC
17839650 ATATCATAGAGCAAATCAGTCATAC
1 ATATCATA-AGCAAATCAGTCATAC
*
17839675 ATAACATAAG
1 ATATCATAAG
17839685 ACCATAACAG
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 2 0.06
25 23 0.74
26 2 0.06
27 4 0.13
ACGTcount: A:0.47, C:0.18, G:0.08, T:0.27
Consensus pattern (24 bp):
ATATCATAAGCAAATCAGTCATAC
Found at i:17847096 original size:27 final size:27
Alignment explanation
Indices: 17847064--17847207 Score: 191
Period size: 27 Copynumber: 5.3 Consensus size: 27
17847054 TGCGATTCTT
* *
17847064 GGGTAAAATGACTAAAATACCCTTGAT
1 GGGTAAAATGACTGAAATACCCTTGAA
*
17847091 GGGTAAAATGA-TGGAAATACCCTTGAT
1 GGGTAAAATGACT-GAAATACCCTTGAA
* *
17847118 GGGTAAAATGATTGAAATACCCTCGAA
1 GGGTAAAATGACTGAAATACCCTTGAA
* **
17847145 GGGTAAAATAACTGAAATACCCTCAAA
1 GGGTAAAATGACTGAAATACCCTTGAA
*
17847172 GGGTAAAATGACTGAAATACCCCTGAA
1 GGGTAAAATGACTGAAATACCCTTGAA
17847199 GGGTAAAAT
1 GGGTAAAAT
17847208 AACTTTTATA
Statistics
Matches: 105, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
26 1 0.01
27 103 0.98
28 1 0.01
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.22
Consensus pattern (27 bp):
GGGTAAAATGACTGAAATACCCTTGAA
Found at i:17847478 original size:26 final size:26
Alignment explanation
Indices: 17847443--17847545 Score: 109
Period size: 26 Copynumber: 4.0 Consensus size: 26
17847433 TTGCCACATA
* *
17847443 TACTGTTACTGGCAGCTTTGCTGTGT
1 TACTGATACTGGCAGCTTTGCTGCGT
* * * * *
17847469 TACTGATACTGGTAGCTCTGGTACAT
1 TACTGATACTGGCAGCTTTGCTGCGT
* *
17847495 TACTGTTACTGGTAGCTTTGCTGCGT
1 TACTGATACTGGCAGCTTTGCTGCGT
17847521 TACT-ATTACTGGCAGCTTTGCTGCG
1 TACTGA-TACTGGCAGCTTTGCTGCG
17847546 ATATTGGTGT
Statistics
Matches: 62, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
26 62 1.00
ACGTcount: A:0.16, C:0.20, G:0.25, T:0.39
Consensus pattern (26 bp):
TACTGATACTGGCAGCTTTGCTGCGT
Found at i:17847505 original size:52 final size:53
Alignment explanation
Indices: 17847438--17847537 Score: 150
Period size: 52 Copynumber: 1.9 Consensus size: 53
17847428 TTGCTTTGCC
* *
17847438 ACATATACTGTTACTGGCAGCTTTGCTGTGTTACTGA-TACTGGTAGCTCTGGT
1 ACATATACTGTTACTGGCAGCTTTGCTGCGTTACT-ATTACTGGCAGCTCTGGT
*
17847491 ACAT-TACTGTTACTGGTAGCTTTGCTGCGTTACTATTACTGGCAGCT
1 ACATATACTGTTACTGGCAGCTTTGCTGCGTTACTATTACTGGCAGCT
17847538 TTGCTGCGAT
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
51 1 0.02
52 38 0.88
53 4 0.09
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.38
Consensus pattern (53 bp):
ACATATACTGTTACTGGCAGCTTTGCTGCGTTACTATTACTGGCAGCTCTGGT
Found at i:17847690 original size:30 final size:30
Alignment explanation
Indices: 17847653--17847768 Score: 126
Period size: 30 Copynumber: 3.9 Consensus size: 30
17847643 TGCATTTGCA
*
17847653 CTGTTACTGTATTAGGCTAAGGCCCACACT
1 CTGTTACTATATTAGGCTAAGGCCCACACT
*
17847683 CTATTACTATATTAGGCTAAGGCCCACACT
1 CTGTTACTATATTAGGCTAAGGCCCACACT
* * * * *
17847713 CTGTTATTATATTGGGCTATGACCCACACA
1 CTGTTACTATATTAGGCTAAGGCCCACACT
* * *
17847743 CTGCTACTGTA-TAGGGCTCAGGCCCA
1 CTGTTACTATATTA-GGCTAAGGCCCA
17847769 GATTGATTCT
Statistics
Matches: 70, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
29 1 0.01
30 69 0.99
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (30 bp):
CTGTTACTATATTAGGCTAAGGCCCACACT
Found at i:17855472 original size:15 final size:15
Alignment explanation
Indices: 17855452--17855483 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
17855442 GTATATAGTT
17855452 TACCGAAATCATTAA
1 TACCGAAATCATTAA
17855467 TACCGAAATCATTAA
1 TACCGAAATCATTAA
17855482 TA
1 TA
17855484 TAAACCGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.19, G:0.06, T:0.28
Consensus pattern (15 bp):
TACCGAAATCATTAA
Found at i:17856661 original size:13 final size:13
Alignment explanation
Indices: 17856643--17856669 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
17856633 CATGGGTAAA
17856643 ATATAGATTTGGT
1 ATATAGATTTGGT
17856656 ATATAGATTTGGT
1 ATATAGATTTGGT
17856669 A
1 A
17856670 ATAAACTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (13 bp):
ATATAGATTTGGT
Found at i:17859457 original size:13 final size:13
Alignment explanation
Indices: 17859439--17859468 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
17859429 GCACATGAAT
17859439 ATAAAAAATAAGA
1 ATAAAAAATAAGA
*
17859452 ATAAAAAATAATA
1 ATAAAAAATAAGA
17859465 ATAA
1 ATAA
17859469 TAATAATGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (13 bp):
ATAAAAAATAAGA
Found at i:17859976 original size:19 final size:19
Alignment explanation
Indices: 17859952--17860005 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
17859942 AATCATATCT
17859952 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
17859971 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
17859990 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
17860006 CTTGAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:17867489 original size:33 final size:33
Alignment explanation
Indices: 17867452--17867518 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
17867442 AGCATTAATC
17867452 TTCCATAGATTTTCAATTAATAGTCAGAGGAAA
1 TTCCATAGATTTTCAATTAATAGTCAGAGGAAA
17867485 TTCCATAGATTTTCAATTAATAGTCAGAGGAAA
1 TTCCATAGATTTTCAATTAATAGTCAGAGGAAA
17867518 T
1 T
17867519 CAAGTGAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (33 bp):
TTCCATAGATTTTCAATTAATAGTCAGAGGAAA
Found at i:17867723 original size:53 final size:54
Alignment explanation
Indices: 17867643--17867749 Score: 162
Period size: 53 Copynumber: 2.0 Consensus size: 54
17867633 AAGGGGTCTT
* *
17867643 TTTTTTTTAACTACGGTTTATAATTTGGGCAAACCAAAAT-ATTAAAATTTGAA
1 TTTTTTTTAACTACCGTTTATAATTTGGGCAAACCAAAATAATCAAAATTTGAA
* * *
17867696 TTTTTTTTAATTACCGTTTATAATTTGGGTAAACTAAAATAATCAAAATTTGAA
1 TTTTTTTTAACTACCGTTTATAATTTGGGCAAACCAAAATAATCAAAATTTGAA
17867750 AAGGAATTCT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
53 36 0.75
54 12 0.25
ACGTcount: A:0.38, C:0.08, G:0.10, T:0.43
Consensus pattern (54 bp):
TTTTTTTTAACTACCGTTTATAATTTGGGCAAACCAAAATAATCAAAATTTGAA
Found at i:17873524 original size:16 final size:16
Alignment explanation
Indices: 17873503--17873550 Score: 87
Period size: 16 Copynumber: 3.0 Consensus size: 16
17873493 TATTGTGTCT
17873503 ATGGAACACTATTTAG
1 ATGGAACACTATTTAG
17873519 ATGGAACACTATTTAG
1 ATGGAACACTATTTAG
*
17873535 ATGGAACACAATTTAG
1 ATGGAACACTATTTAG
17873551 TGTGAAAGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (16 bp):
ATGGAACACTATTTAG
Found at i:17883843 original size:45 final size:45
Alignment explanation
Indices: 17883779--17883873 Score: 140
Period size: 45 Copynumber: 2.1 Consensus size: 45
17883769 TAACAGATAC
*
17883779 TCGGTGGATTCAGCACATAGCAACCACCTTA-TCAATCAATGTTGT
1 TCGGTGGATTCAGCACATAGCAACCACCTTACT-AATCAATGATGT
*
17883824 TCGGTGGAATT-AGCACATAGCAACCACCTTACTAATGAATGATGT
1 TCGGTGG-ATTCAGCACATAGCAACCACCTTACTAATCAATGATGT
17883869 TCGGT
1 TCGGT
17883874 TCCCATAGTA
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
45 42 0.91
46 4 0.09
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.28
Consensus pattern (45 bp):
TCGGTGGATTCAGCACATAGCAACCACCTTACTAATCAATGATGT
Found at i:17889205 original size:22 final size:19
Alignment explanation
Indices: 17889170--17889213 Score: 52
Period size: 21 Copynumber: 2.2 Consensus size: 19
17889160 CTCTTTCAGC
*
17889170 CACCGTAGACGGCGGTGCCGG
1 CACCGGAGACGGC-G-GCCGG
17889191 CACCGGAGATCGGCGGCCGG
1 CACCGGAGA-CGGCGGCCGG
17889211 CAC
1 CAC
17889214 GATGGCCGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 8 0.38
21 9 0.43
22 4 0.19
ACGTcount: A:0.16, C:0.36, G:0.41, T:0.07
Consensus pattern (19 bp):
CACCGGAGACGGCGGCCGG
Found at i:17894808 original size:21 final size:23
Alignment explanation
Indices: 17894784--17894825 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
17894774 CAAAATATAA
17894784 AAAAAAAGAAA-AAAA-AGAGTG
1 AAAAAAAGAAAGAAAATAGAGTG
*
17894805 AAAAGAAGAAAGAAAATAGAG
1 AAAAAAAGAAAGAAAATAGAG
17894826 AGGCCAAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 10 0.56
22 4 0.22
23 4 0.22
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.05
Consensus pattern (23 bp):
AAAAAAAGAAAGAAAATAGAGTG
Found at i:17896166 original size:44 final size:44
Alignment explanation
Indices: 17896033--17896173 Score: 115
Period size: 44 Copynumber: 3.2 Consensus size: 44
17896023 AACAGATCTG
* * *
17896033 GCCTTCTTGCACCGACAGCGAAGCAGATCGAAGATACCAGCCTT
1 GCCTTCCTGCACCGACAGCGAAGCAGATTGAAGATACAAGCCTT
* **** * * * * ** *
17896077 ACCTTCCTGGGTTG-CATC-AGAGCAGGTTAAAAATAGTAGATCTT
1 GCCTTCCTGCACCGACAGCGA-AGCAGATTGAAGATACAAG-CCTT
17896121 GCCTTCCTGCACCGACAGCGAAGCAGATTGAAGATACAAGCCTT
1 GCCTTCCTGCACCGACAGCGAAGCAGATTGAAGATACAAGCCTT
17896165 GCCTTCCTG
1 GCCTTCCTG
17896174 GGTTACAGCG
Statistics
Matches: 67, Mismatches: 26, Indels: 8
0.66 0.26 0.08
Matches are distributed among these distances:
42 1 0.01
43 16 0.24
44 32 0.48
45 17 0.25
46 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (44 bp):
GCCTTCCTGCACCGACAGCGAAGCAGATTGAAGATACAAGCCTT
Found at i:17896175 original size:88 final size:88
Alignment explanation
Indices: 17896025--17896684 Score: 795
Period size: 88 Copynumber: 7.5 Consensus size: 88
17896015 GTGAAGATAA
* * * * * *
17896025 CAGATCTGGCCTTCTTGCACCGACAGCGAAGCAGATCGAAGATACCAGCCTTACCTTCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTGGGTT
*
17896090 GCA-TCAGAGCAGGTTAAAAATAG
66 GCAGT-GGAGCAGGTTAAAAATAG
* * * *
17896113 TAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATTGAAGATACAAGCCTTGCCTTCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTGGGTT
* * *
17896178 ACAGCGGAGTAGGTTAAAAATAG
66 GCAGTGGAGCAGGTTAAAAATAG
* * * * * *
17896201 CAGATCTTGCCTTCCTACACCAAAAACGAAGCAGATCGAAGACACTAA-ACTTGCCTCCCTGCGT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACAC-AAGCCTTGCCTCCCTGGGT
17896265 TGCAGTGGAGCAGGTTAAAAATAG
65 TGCAGTGGAGCAGGTTAAAAATAG
* * * *
17896289 CAGATCTTGCCTTCCTGCACCGCCAGTGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTAGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTGGGTT
* *
17896354 GCAGTGGAGCAAGTTAAAAATTG
66 GCAGTGGAGCAGGTTAAAAATAG
*
17896377 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACTAGCCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTGGGTT
*
17896442 GCAGCGGAGCAGGTTAAAAATAG
66 GCAGTGGAGCAGGTTAAAAATAG
* *
17896465 CAGATCTTGCCTTTCTGCACCGACAGTGAAGCAGATCGAAGACACCAA-CCTTGCCTCCCTGGGT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACA-CAAGCCTTGCCTCCCTGGGT
* *
17896529 TACAGTGGAGCACGTTAAAAATAG
65 TGCAGTGGAGCAGGTTAAAAATAG
* * * * * ** * **
17896553 CAGATCTTGCCTTCCTGCACCGACAGCGAAGTAGATCGATGACCCCAGCCCTATCTCCCTGAGCA
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTGGGTT
** * * * *
17896618 ATAATGGAGTATGTTGAAAATAG
66 GCAGTGGAGCAGGTTAAAAATAG
* * * * *
17896641 CAAATCTTGCCTTCCTGTACTGGCAGTGAAGCAGATCGAAGACA
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACA
17896685 TTAGTCTTAT
Statistics
Matches: 494, Mismatches: 73, Indels: 10
0.86 0.13 0.02
Matches are distributed among these distances:
87 3 0.01
88 487 0.99
89 4 0.01
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (88 bp):
CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTGGGTT
GCAGTGGAGCAGGTTAAAAATAG
Found at i:17896210 original size:44 final size:44
Alignment explanation
Indices: 17896078--17896216 Score: 120
Period size: 44 Copynumber: 3.2 Consensus size: 44
17896068 ACCAGCCTTA
* * * *
17896078 CCTTCCTGGGTTGCATCAGAGCAGGTTAAAAATAGTAGATCTTG
1 CCTTCCTGGGTTACAGCGGAGCAGGTTAAAAATAGCAGATCTTG
**** * * * * *
17896122 CCTTCCTGCACCGACAGCGAAGCAGATTGAAGATA-CA-AGCCTTG
1 CCTTCCTG-GGTTACAGCGGAGCAGGTTAAAAATAGCAGA-TCTTG
*
17896166 CCTTCCTGGGTTACAGCGGAGTAGGTTAAAAATAGCAGATCTTG
1 CCTTCCTGGGTTACAGCGGAGCAGGTTAAAAATAGCAGATCTTG
17896210 CCTTCCT
1 CCTTCCT
17896217 ACACCAAAAA
Statistics
Matches: 68, Mismatches: 23, Indels: 8
0.69 0.23 0.08
Matches are distributed among these distances:
43 18 0.26
44 34 0.50
45 16 0.24
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (44 bp):
CCTTCCTGGGTTACAGCGGAGCAGGTTAAAAATAGCAGATCTTG
Found at i:17896298 original size:44 final size:44
Alignment explanation
Indices: 17896250--17896570 Score: 157
Period size: 44 Copynumber: 7.3 Consensus size: 44
17896240 AGACACTAAA
17896250 CTTGCCTCCCTGCGTTGCAGTGGAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTCCCTGCGTTGCAGTGGAGCAGGTTAAAAATAGCAGAT
* *** * * ** * * * *
17896294 CTTGCCTTCCTGCACCGCCAGTGAAGCAGATCGAAGACACCAG-C
1 CTTGCCTCCCTGCGTTG-CAGTGGAGCAGGTTAAAAATAGCAGAT
* *
17896338 CTTGCCTCCCTAG-GTTGCAGTGGAGCAAGTTAAAAATTGCAGAT
1 CTTGCCTCCCT-GCGTTGCAGTGGAGCAGGTTAAAAATAGCAGAT
* *** * * * ** * * *
17896382 CTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACA-CTAG-C
1 CTTGCCTCCCTGCGTTG-CAGTGGAGCAGGTTAAAAATAGC-AGAT
* *
17896426 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTCCCTGCGTTGCAGTGGAGCAGGTTAAAAATAGCAGAT
** *** * * ** * * * *
17896470 CTTGCCTTTCTGCACCGACAGTGAAGCAGATCGAAGACACCA-AC
1 CTTGCCTCCCTGCGTTG-CAGTGGAGCAGGTTAAAAATAGCAGAT
* * *
17896514 CTTGCCTCCCTGGGTTACAGTGGAGCACGTTAAAAATAGCAGAT
1 CTTGCCTCCCTGCGTTGCAGTGGAGCAGGTTAAAAATAGCAGAT
*
17896558 CTTGCCTTCCTGC
1 CTTGCCTCCCTGC
17896571 ACCGACAGCG
Statistics
Matches: 182, Mismatches: 85, Indels: 20
0.63 0.30 0.07
Matches are distributed among these distances:
43 50 0.27
44 83 0.46
45 49 0.27
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (44 bp):
CTTGCCTCCCTGCGTTGCAGTGGAGCAGGTTAAAAATAGCAGAT
Found at i:17897067 original size:44 final size:44
Alignment explanation
Indices: 17896999--17897280 Score: 162
Period size: 44 Copynumber: 6.5 Consensus size: 44
17896989 GAAGATGGCG
*
17896999 AATCTTATCTCCCTGAAGCTGCAGTGGAGCAGATTAAAGCTGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTGAT
* * *
17897043 AATCCTATCTCCCTGAAGTTGCAGTGGAG-TGCATTAAAACCT--T
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAG-ATT-AAAGCTGAT
* * * *
17897086 GGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T--CGC--AT
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTGAT
* * *
17897125 CAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAA-CAAGCA-
1 -AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC-TG-AT
* * * * * *
17897171 AGTCTTATC-CTCCTAAAGTTGCAGT-GAGGTAGACTGAAA-ATGGAA
1 AATCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAAAGCT-GAT
* *
17897216 AATCTTATCTCCCTGTAGTTGCAGTGGAGTAGATTAAAG-TCGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCT-GAT
* *
17897260 AATCCTATCTCTCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTG
17897281 TAGTAAAGCG
Statistics
Matches: 182, Mismatches: 34, Indels: 44
0.70 0.13 0.17
Matches are distributed among these distances:
39 3 0.02
40 20 0.11
41 7 0.04
42 2 0.01
43 10 0.05
44 101 0.55
45 35 0.19
46 3 0.02
47 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTGAT
Found at i:17897364 original size:217 final size:217
Alignment explanation
Indices: 17896984--17897413 Score: 632
Period size: 217 Copynumber: 2.0 Consensus size: 217
17896974 GCAATTTAAA
* **
17896984 AGACTGAAGATGGCGAATCTTATCTCCCTGAAGCTGCAGTGGAGCAGATTAAAGCTGATAATCCT
1 AGACTGAAAATGGAAAATCTTATCTCCCTGAAGCTGCAGTGGAGCAGATTAAAGCTGATAATCCT
** *
17897049 ATCTCCCTGAAGTTGCAGTGGAGTGCATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGA
66 ATCTCCCTGAAGTTGCAGTAAAGCGCATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGA
* * * *
17897114 GCAGATCGCATCAAGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTAAACAAGCAAGTCTTAT
131 GCAGATCGCATCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAACAAACAAATCCTA-
17897179 CCT-CCTAAAGTTGCAGTGAGGT
195 CCTCCCTAAAGTTGCAGTGAGGT
* * *
17897201 AGACTGAAAATGGAAAATCTTATCTCCCTGTAGTTGCAGTGGAGTAGATTAAAG-TCGATAATCC
1 AGACTGAAAATGGAAAATCTTATCTCCCTGAAGCTGCAGTGGAGCAGATTAAAGCT-GATAATCC
* * * *
17897265 TATCTCTCTGAAGTTGTAGTAAAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGTAGAG
65 TATCTCCCTGAAGTTGCAGTAAAGCGCATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAG
* *
17897330 AGCAGATCGCATCTAGTCTTATCT-CCTCGAAGTTGCAGTGGAGCAGACTAAATAAACAAATCCT
130 AGCAGATCGCATCAAGTCTTATCTCCCT-GAAGTTGCAGTGGAGCAGACTAAACAAACAAATCCT
*
17897394 ACCTCCCTAAAGTTGTAGTG
194 ACCTCCCTAAAGTTGCAGTG
17897414 GAGTGGATTA
Statistics
Matches: 190, Mismatches: 20, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
216 7 0.04
217 183 0.96
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (217 bp):
AGACTGAAAATGGAAAATCTTATCTCCCTGAAGCTGCAGTGGAGCAGATTAAAGCTGATAATCCT
ATCTCCCTGAAGTTGCAGTAAAGCGCATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGA
GCAGATCGCATCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAACAAACAAATCCTAC
CTCCCTAAAGTTGCAGTGAGGT
Found at i:17901347 original size:45 final size:45
Alignment explanation
Indices: 17901283--17901377 Score: 154
Period size: 45 Copynumber: 2.1 Consensus size: 45
17901273 TAATAGATAC
* * *
17901283 TCGGTGGATTCAACACATAGCATCCACCTTATTAATCAATGATGT
1 TCGGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGT
*
17901328 TCGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
1 TCGGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGT
17901373 TCGGT
1 TCGGT
17901378 TCACATAGTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (45 bp):
TCGGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGT
Found at i:17901441 original size:51 final size:52
Alignment explanation
Indices: 17901383--17901518 Score: 188
Period size: 50 Copynumber: 2.7 Consensus size: 52
17901373 TCGGTTCACA
*
17901383 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCA-TCCGATATACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATTCCGATACACG
* * * *
17901434 TAGTAGCCTGCACATAGTACTACACTTGCGA-C-TTATCATTCCGGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATTCCGATACACG
* *
17901484 TAGTAGCCTGCATATAGTACTACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACATGTGACCAT
17901519 CACTTTCACT
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
49 5 0.07
50 37 0.51
51 30 0.41
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.26
Consensus pattern (52 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATTCCGATACACG
Found at i:17906398 original size:26 final size:26
Alignment explanation
Indices: 17906336--17906391 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 26
17906326 AAATGAACAA
* *
17906336 ATTCAATTCAATTCAATAATTATTAT
1 ATTCTATTCAATTCAATAATAATTAT
17906362 ATTCTATTCAATTCAATCAA-AATTCAT
1 ATTCTATTCAATTCAAT-AATAATT-AT
17906389 ATT
1 ATT
17906392 TTATCAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.41, C:0.14, G:0.00, T:0.45
Consensus pattern (26 bp):
ATTCTATTCAATTCAATAATAATTAT
Found at i:17908906 original size:40 final size:39
Alignment explanation
Indices: 17908738--17908944 Score: 303
Period size: 39 Copynumber: 5.3 Consensus size: 39
17908728 ACTAAGATCT
*
17908738 GAAGGCATTTGTGCGAGATACTAATTACGGGCTAAG-CC
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCC
17908776 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCC
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCC
17908815 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCC
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCC
* * *
17908854 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCC
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCC
* *
17908894 GAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCC
1 GAAGGCATTTGTGCGAGA-TACTAAT-TCCGGGCTAAG-CCC
17908934 GAAGGCATTTG
1 GAAGGCATTTG
17908945 AACGAGGAGC
Statistics
Matches: 156, Mismatches: 9, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
38 35 0.22
39 75 0.48
40 46 0.29
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCC
Found at i:17908958 original size:40 final size:39
Alignment explanation
Indices: 17908685--17908944 Score: 236
Period size: 39 Copynumber: 6.6 Consensus size: 39
17908675 TGAATGATGT
* * *
17908685 CCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTATAA
* * *
17908724 CCGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAATTA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACT-ATAA
*
17908765 -CGGGCTAAG--CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA-A
*
17908802 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATA-A
17908841 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAA
* *
17908879 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTATAA
*
17908920 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
17908945 AACGAGGAGC
Statistics
Matches: 193, Mismatches: 16, Indels: 23
0.83 0.07 0.10
Matches are distributed among these distances:
37 1 0.01
38 32 0.17
39 89 0.46
40 59 0.31
41 12 0.06
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAA
Found at i:17908966 original size:79 final size:79
Alignment explanation
Indices: 17908738--17908977 Score: 262
Period size: 79 Copynumber: 3.1 Consensus size: 79
17908728 ACTAAGATCT
**
17908738 GAAGGCATTTGTGCGAGATACTAATTA-CGGGCTAAG-CCGAAGGCATTTGTGCGAGAT-ACTAA
1 GAAGGCATTTGTGCGAGATACTAA-TACCGGGCTAAGCCCGAAGGCATTTGAACGAG-TGACTAA
* *
17908800 TTCCGGGCTAAG-CCC
64 ATCCGGGTTAAGTCCC
* ** *
17908815 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAAT
17908880 CCGGGTTAAGTCCC
66 CCGGGTTAAGTCCC
*
17908894 GAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCT
1 GAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CT
* * *
17908956 ATATCC-GGTTAAATTCC
62 AAATCCGGGTTAAGTCCC
17908973 GAAGG
1 GAAGG
17908978 TACGTGATTT
Statistics
Matches: 144, Mismatches: 11, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
76 1 0.01
77 34 0.24
78 37 0.26
79 47 0.33
80 25 0.17
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAAT
CCGGGTTAAGTCCC
Found at i:17925708 original size:27 final size:26
Alignment explanation
Indices: 17925664--17925718 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
17925654 TTTTTTTATA
17925664 TTTTATAATTTTAATTTTTTAAAGAAT
1 TTTTATAATTTTAATTTTTTAAA-AAT
* ** *
17925691 TTTTGTAATTTTTTTTTTTTTAAAAT
1 TTTTATAATTTTAATTTTTTAAAAAT
17925717 TT
1 TT
17925719 AAAATTAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (26 bp):
TTTTATAATTTTAATTTTTTAAAAAT
Found at i:17932231 original size:20 final size:21
Alignment explanation
Indices: 17932200--17932238 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
17932190 TTAATGTATG
*
17932200 ATCATATTAAATTATTTAAAT
1 ATCATATTAAATTAATTAAAT
17932221 ATCAT-TTAAATTAATTAA
1 ATCATATTAAATTAATTAA
17932239 TTAATTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (21 bp):
ATCATATTAAATTAATTAAAT
Found at i:17933692 original size:20 final size:21
Alignment explanation
Indices: 17933664--17933702 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
17933654 AAAAAATTAA
*
17933664 TTAATTAATTTAA-ATGATAT
1 TTAAATAATTTAATATGATAT
17933684 TTAAATAATTTAATATGAT
1 TTAAATAATTTAATATGAT
17933703 CATACATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (21 bp):
TTAAATAATTTAATATGATAT
Found at i:17944139 original size:30 final size:30
Alignment explanation
Indices: 17944103--17944168 Score: 100
Period size: 28 Copynumber: 2.3 Consensus size: 30
17944093 AATAGTAAAG
*
17944103 TAAGAGTTTTGATATATTTGTTGGCGAATA
1 TAAGAGTTTTGATATATTTATTGGCGAATA
*
17944133 TAAGAG--TTGATATATTTATTGGCTAATA
1 TAAGAGTTTTGATATATTTATTGGCGAATA
17944161 TAAGAGTT
1 TAAGAGTT
17944169 CCTTTCAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
28 26 0.81
30 6 0.19
ACGTcount: A:0.33, C:0.03, G:0.21, T:0.42
Consensus pattern (30 bp):
TAAGAGTTTTGATATATTTATTGGCGAATA
Found at i:17947089 original size:54 final size:53
Alignment explanation
Indices: 17947024--17947406 Score: 457
Period size: 54 Copynumber: 7.1 Consensus size: 53
17947014 ATTTGTGGGC
* *
17947024 AAATGACTGAAATACCCTCGAAGGATAAAATGATCGAAATACCCCTAAAGGGTA
1 AAATGACTGAAATACCCTC-AAGGGTAAAATGACCGAAATACCCCTAAAGGGTA
* *
17947078 AAATGATTGAAATACCCTCAAGGGGTAAAATGATCGAAATACCCCTAAAGGGTA
1 AAATGACTGAAATACCCTCAA-GGGTAAAATGACCGAAATACCCCTAAAGGGTA
* *
17947132 AAATGACTGAAATACCCTCGATGGGTAAAATGACCGAAATA-CCCTGAAGGGTA
1 AAATGACTGAAATACCCTC-AAGGGTAAAATGACCGAAATACCCCTAAAGGGTA
* * ** *
17947185 AAATGATTGAAATA-CCTCAAAGGGTAAAATGATCGAAATACCCCCGAGGGGTA
1 AAATGACTGAAATACCCTC-AAGGGTAAAATGACCGAAATACCCCTAAAGGGTA
* * ** **
17947238 AAATGACCGAAATACCCCCATAGGGTAAAATGACTAAAATACCTTTAAAGGGTA
1 AAATGACTGAAATACCCTCA-AGGGTAAAATGACCGAAATACCCCTAAAGGGTA
* * * *
17947292 AAATGACCGAAATACCCCTTAGGGGTAAAATGACCGAAATACCCCTAAAAGGTA
1 AAATGACTGAAATA-CCCTCAAGGGTAAAATGACCGAAATACCCCTAAAGGGTA
* * *
17947346 AAATGA-TCGAAATACCCTCAAGGGGTAACATGACCGAAATACCCCTGAAGGATA
1 AAATGACT-GAAATACCCTCAA-GGGTAAAATGACCGAAATACCCCTAAAGGGTA
17947400 AAATGAC
1 AAATGAC
17947407 CCCGTAGGGT
Statistics
Matches: 282, Mismatches: 38, Indels: 17
0.84 0.11 0.05
Matches are distributed among these distances:
52 23 0.08
53 54 0.19
54 200 0.71
55 5 0.02
ACGTcount: A:0.43, C:0.19, G:0.20, T:0.19
Consensus pattern (53 bp):
AAATGACTGAAATACCCTCAAGGGTAAAATGACCGAAATACCCCTAAAGGGTA
Found at i:17947405 original size:27 final size:27
Alignment explanation
Indices: 17947024--17947407 Score: 393
Period size: 27 Copynumber: 14.3 Consensus size: 27
17947014 ATTTGTGGGC
* * *
17947024 AAATGACTGAAATA-CCCTCGAAGGATA
1 AAATGACCGAAATACCCCT-AAAGGGTA
*
17947051 AAATGATCGAAATACCCCTAAAGGGTA
1 AAATGACCGAAATACCCCTAAAGGGTA
** *
17947078 AAATGATTGAAATA-CCCTCAAGGGGTA
1 AAATGACCGAAATACCCCT-AAAGGGTA
*
17947105 AAATGATCGAAATACCCCTAAAGGGTA
1 AAATGACCGAAATACCCCTAAAGGGTA
* * *
17947132 AAATGACTGAAATA-CCCTCGATGGGTA
1 AAATGACCGAAATACCCCT-AAAGGGTA
*
17947159 AAATGACCGAAATA-CCCTGAAGGGTA
1 AAATGACCGAAATACCCCTAAAGGGTA
** *
17947185 AAATGATTGAAATACCTC-AAAGGGTA
1 AAATGACCGAAATACCCCTAAAGGGTA
* ** *
17947211 AAATGATCGAAATACCCCCGAGGGGTA
1 AAATGACCGAAATACCCCTAAAGGGTA
* *
17947238 AAATGACCGAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCTAAAGGGTA
** **
17947265 AAATGACTAAAATACCTTTAAAGGGTA
1 AAATGACCGAAATACCCCTAAAGGGTA
* *
17947292 AAATGACCGAAATACCCCTTAGGGGTA
1 AAATGACCGAAATACCCCTAAAGGGTA
*
17947319 AAATGACCGAAATACCCCTAAAAGGTA
1 AAATGACCGAAATACCCCTAAAGGGTA
* *
17947346 AAATGATCGAAATA-CCCTCAAGGGGTA
1 AAATGACCGAAATACCCCT-AAAGGGTA
* * *
17947373 ACATGACCGAAATACCCCTGAAGGATA
1 AAATGACCGAAATACCCCTAAAGGGTA
17947400 AAATGACC
1 AAATGACC
17947408 CCGTAGGGTA
Statistics
Matches: 299, Mismatches: 50, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
26 54 0.18
27 233 0.78
28 12 0.04
ACGTcount: A:0.42, C:0.19, G:0.20, T:0.18
Consensus pattern (27 bp):
AAATGACCGAAATACCCCTAAAGGGTA
Found at i:17947448 original size:27 final size:26
Alignment explanation
Indices: 17947405--17947456 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
17947395 GGATAAAATG
*
17947405 ACCCCGTAGGGTAAAATGATTGTTAT
1 ACCCCGTAGGGTAAAATGACTGTTAT
17947431 ACCCC-TAGGAGTCAAAATGACTGTTA
1 ACCCCGTAGG-GT-AAAATGACTGTTA
17947457 CGACCTTATG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 4 0.17
26 7 0.30
27 12 0.52
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (26 bp):
ACCCCGTAGGGTAAAATGACTGTTAT
Found at i:17947626 original size:26 final size:26
Alignment explanation
Indices: 17947587--17947666 Score: 101
Period size: 26 Copynumber: 3.1 Consensus size: 26
17947577 TGGAGGAAGT
17947587 ATACTGAT-TCTGGCAGCTTTGCTGCG
1 ATACTGATAT-TGGCAGCTTTGCTGCG
*
17947613 ATACTGATATTGGCAGCTCTGCTGCG
1 ATACTGATATTGGCAGCTTTGCTGCG
* * *
17947639 ATGCTGCTACTGGCA-CTTTGCTGCG
1 ATACTGATATTGGCAGCTTTGCTGCG
17947664 ATA
1 ATA
17947667 TTGGTATGTT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
25 11 0.23
26 35 0.74
27 1 0.02
ACGTcount: A:0.17, C:0.24, G:0.26, T:0.33
Consensus pattern (26 bp):
ATACTGATATTGGCAGCTTTGCTGCG
Found at i:17948495 original size:53 final size:53
Alignment explanation
Indices: 17948415--17948612 Score: 227
Period size: 53 Copynumber: 3.7 Consensus size: 53
17948405 ATGGCCATGG
* * * *
17948415 TAAGAATATCATATAGTGTAAGACCTAGTCTAGGACTAGACATCATATGAAGA
1 TAAGAAGACCATATAATGTAAGACCTAATCTAGGACTAGACATCATATGAAGA
* * * *
17948468 TAAGAAGACCATATAGTGTAAGACCTAGTCGAGGACTAAACATCATATGAAGA
1 TAAGAAGACCATATAATGTAAGACCTAATCTAGGACTAGACATCATATGAAGA
** * **
17948521 TAAGAAGACCATATAATGTAAGACCTAATCTAATACTATGGCATCATATGGGGA
1 TAAGAAGACCATATAATGTAAGACCTAATCTAGGACTA-GACATCATATGAAGA
* * *
17948575 TACA-AAAACCACATAATGTAAGACCTAATTTAGGACTA
1 TA-AGAAGACCATATAATGTAAGACCTAATCTAGGACTA
17948613 TGGTATCATG
Statistics
Matches: 125, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
53 82 0.66
54 42 0.34
55 1 0.01
ACGTcount: A:0.43, C:0.15, G:0.18, T:0.24
Consensus pattern (53 bp):
TAAGAAGACCATATAATGTAAGACCTAATCTAGGACTAGACATCATATGAAGA
Found at i:17948610 original size:107 final size:106
Alignment explanation
Indices: 17948415--17948612 Score: 236
Period size: 107 Copynumber: 1.9 Consensus size: 106
17948405 ATGGCCATGG
* * * * * * *
17948415 TAAGAATATCATATAGTGTAAGACCTAGTCTAGGACTAGACATCATATGAAGATAAGAAGACCAT
1 TAAGAAGACCATATAATGTAAGACCTAATCTAAGACTAGACATCATATGAAGATAAGAAAACCAC
* *
17948480 ATAGTGTAAGACCTAGTCGAGGACTAAACATCATATGAAGA
66 ATAATGTAAGACCTAATCGAGGACTAAACATCATATGAAGA
* * **
17948521 TAAGAAGACCATATAATGTAAGACCTAATCTAATACTATGGCATCATATGGGGATACA-AAAACC
1 TAAGAAGACCATATAATGTAAGACCTAATCTAAGACTA-GACATCATATGAAGATA-AGAAAACC
**
17948585 ACATAATGTAAGACCTAATTTAGGACTA
64 ACATAATGTAAGACCTAATCGAGGACTA
17948613 TGGTATCATG
Statistics
Matches: 75, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
106 32 0.43
107 42 0.56
108 1 0.01
ACGTcount: A:0.43, C:0.15, G:0.18, T:0.24
Consensus pattern (106 bp):
TAAGAAGACCATATAATGTAAGACCTAATCTAAGACTAGACATCATATGAAGATAAGAAAACCAC
ATAATGTAAGACCTAATCGAGGACTAAACATCATATGAAGA
Found at i:17952610 original size:16 final size:16
Alignment explanation
Indices: 17952586--17952621 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
17952576 ATTTAGCCAT
17952586 TTTTATTTTATTATAA
1 TTTTATTTTATTATAA
* *
17952602 TTTTGTTTTATTTTAA
1 TTTTATTTTATTATAA
17952618 TTTT
1 TTTT
17952622 TACATTCTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (16 bp):
TTTTATTTTATTATAA
Found at i:17974269 original size:79 final size:81
Alignment explanation
Indices: 17974133--17974317 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
17974123 TTGAATGATG
* *
17974133 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
17974197 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * * **
17974212 TTCCGGGCCAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
17974274 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
17974292 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
17974318 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.63
80 32 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:17974324 original size:40 final size:40
Alignment explanation
Indices: 17974133--17974317 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
17974123 TTGAATGATG
* * * *
17974133 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
17974173 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
17974213 TCCGGGCCAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
17974252 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
17974293 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
17974318 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 34 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:17974339 original size:79 final size:79
Alignment explanation
Indices: 17974186--17974350 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
17974176 GGACTAAGAT
* * **
17974186 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCCAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCCAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
17974251 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
17974265 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCCAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
17974328 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
17974344 CCGAAGG
1 CCGAAGG
17974351 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCCAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:17979193 original size:46 final size:44
Alignment explanation
Indices: 17979126--17979214 Score: 135
Period size: 46 Copynumber: 2.0 Consensus size: 44
17979116 TAAAAGGTGG
17979126 GACCAAGGTGAAACCCTACAAAGGG-GCTCTTTGAGTCAAAAAAAAA
1 GACCAAGGTGAAACCCTACAAAGGGAGC-C-TTGAGT-AAAAAAAAA
*
17979172 GACCAGGGTGAAACCCTACAAAGGGAGCCTTGAGTAAAAAAAA
1 GACCAAGGTGAAACCCTACAAAGGGAGCCTTGAGTAAAAAAAA
17979215 GGAGAGGCTA
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
44 8 0.20
45 6 0.15
46 25 0.61
47 2 0.05
ACGTcount: A:0.44, C:0.19, G:0.24, T:0.13
Consensus pattern (44 bp):
GACCAAGGTGAAACCCTACAAAGGGAGCCTTGAGTAAAAAAAAA
Found at i:17980569 original size:44 final size:45
Alignment explanation
Indices: 17980475--17980577 Score: 109
Period size: 44 Copynumber: 2.3 Consensus size: 45
17980465 GAAAAGATAC
* * *
17980475 CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAA
1 CAGATCTTGTCTTCACATACTGGTCGCGAAGTAGATCAAAGAAAA
* ** * * *
17980520 TAGATCTTGTCTTCATGTACTGG-CGCGAAGTAGATCAAATATAG
1 CAGATCTTGTCTTCACATACTGGTCGCGAAGTAGATCAAAGAAAA
*
17980564 CAGATCTTGCCTTC
1 CAGATCTTGTCTTC
17980578 CTACATAAAC
Statistics
Matches: 47, Mismatches: 11, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
44 28 0.60
45 19 0.40
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.29
Consensus pattern (45 bp):
CAGATCTTGTCTTCACATACTGGTCGCGAAGTAGATCAAAGAAAA
Found at i:17980803 original size:89 final size:89
Alignment explanation
Indices: 17980693--17981094 Score: 599
Period size: 89 Copynumber: 4.5 Consensus size: 89
17980683 TAGATTGTAG
* * *
17980693 AAACAGATCTTGTCTTCATGTACTGGCGTAAAGTAGATCAAAGATACCAGATCTTGTCTTCCCAT
1 AAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGCCTTCCCAT
*
17980758 ACTGGTGGCGAAGTAGATCGAAGA
66 ACTGGTGGCGAAGCAGATCGAAGA
* *
17980782 AAATAGATCTTTTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGCCTTCCCAT
1 AAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGCCTTCCCAT
17980847 ACTGGTGGCGAAGCAGATCGAAGA
66 ACTGGTGGCGAAGCAGATCGAAGA
* *
17980871 AAACAGATCTTGTCTTCATGTACTAGTGTGAAGTAGATCAAAGATAGCAGATCTTGCCTTCCCAT
1 AAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGCCTTCCCAT
*
17980936 ACTGGTGGCGAAGCAGATCAAAGA
66 ACTGGTGGCGAAGCAGATCGAAGA
** * ** * * *
17980960 AAGTAGATCTTGTTTTCATGTACTGGCGTGAAGTAGATCAAAGA-AATAGATATTGTCTCCCCAT
1 AAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGCCTTCCCAT
* * * *
17981024 ACTGGTGGTGGAGTAGGTCGAAGA
66 ACTGGTGGCGAAGCAGATCGAAGA
*
17981048 AAACAGATCGTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAG
1 AAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAG
17981095 TAGGTCCTGT
Statistics
Matches: 281, Mismatches: 31, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
88 74 0.26
89 207 0.74
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (89 bp):
AAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGCCTTCCCAT
ACTGGTGGCGAAGCAGATCGAAGA
Found at i:17981108 original size:44 final size:44
Alignment explanation
Indices: 17980693--17981091 Score: 341
Period size: 44 Copynumber: 9.0 Consensus size: 44
17980683 TAGATTGTAG
*
17980693 AAACAGATCTTGTCTTCATGTACTGGCGTAAAGTAGATCAAAGA
1 AAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGA
* * *** * * *
17980737 TACCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
1 AAACAGATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCAAAGA
* *
17980782 AAATAGATCTTTTCTTCATGTACTGGCGTGAAGTAGATCAAAGA
1 AAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGA
* * * *** * * * *
17980826 TAGCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGA
1 AAACAGATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCAAAGA
* *
17980871 AAACAGATCTTGTCTTCATGTACTAGTGTGAAGTAGATCAAAGA
1 AAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGA
* * * *** * * *
17980915 TAGCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGA
1 AAACAGATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCAAAGA
** *
17980960 AAGTAGATCTTGTTTTCATGTACTGGCGTGAAGTAGATCAAAG-
1 AAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGA
* * * *** * * * *
17981003 AAATAGATATTGTCTCCCCATACTGGTGGTGGAGTAGGTCGAAGA
1 AAACAGATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCAAAGA
*
17981048 AAACAGATCGTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGA
1 AAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGA
17981092 TAGTAGGTCC
Statistics
Matches: 266, Mismatches: 84, Indels: 10
0.74 0.23 0.03
Matches are distributed among these distances:
43 19 0.07
44 128 0.48
45 119 0.45
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (44 bp):
AAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGA
Found at i:17982935 original size:3 final size:3
Alignment explanation
Indices: 17982927--17983009 Score: 105
Period size: 3 Copynumber: 27.7 Consensus size: 3
17982917 GTTATTTTTG
* ** *
17982927 TAT TAT TAT TAT TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TGG TAG
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
17982975 TAT TAT TAT TAT TAT TA- TAT TAT ATAG TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TA
17983010 CTATACTTAT
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
2 2 0.03
3 66 0.94
4 2 0.03
ACGTcount: A:0.34, C:0.01, G:0.05, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:17985024 original size:22 final size:22
Alignment explanation
Indices: 17984993--17985035 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
17984983 ATTTTAGTTA
*
17984993 AATAATTATTATTTTAAATAAT
1 AATAACTATTATTTTAAATAAT
*
17985015 AATAACTATTATTTTTAATAA
1 AATAACTATTATTTTAAATAA
17985036 ATTGATTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (22 bp):
AATAACTATTATTTTAAATAAT
Found at i:17985139 original size:103 final size:101
Alignment explanation
Indices: 17985001--17985211 Score: 386
Period size: 103 Copynumber: 2.1 Consensus size: 101
17984991 TAAATAATTA
17985001 TTATTTTAAATAATAATAACTATTATTTTTAATAAATTGATTTATAGAATTATTTGTAGATCGAT
1 TTATTTTAAATAATAATAACTATTATTTTTAATAAATTGATTTATAGAATTATTTGTAGATCGAT
17985066 TTAGTATTTGTATCCTATTATTTTAAAAATAAAAAG
66 TTAGTATTTGTATCCTATTATTTTAAAAATAAAAAG
*
17985102 TTATTTTAAATAATAATAACTTTATTATTTTTAATAAATTGATTTATAGAATTATTTGTAGATTG
1 TTATTTTAAATAATAATAAC--TATTATTTTTAATAAATTGATTTATAGAATTATTTGTAGATCG
17985167 ATTTAGTATTTGTATCCTATTATTTTAAAAATAAAAAG
64 ATTTAGTATTTGTATCCTATTATTTTAAAAATAAAAAG
*
17985205 TAATTTT
1 TTATTTT
17985212 TGTTATAAAA
Statistics
Matches: 106, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
101 20 0.19
103 86 0.81
ACGTcount: A:0.40, C:0.03, G:0.08, T:0.49
Consensus pattern (101 bp):
TTATTTTAAATAATAATAACTATTATTTTTAATAAATTGATTTATAGAATTATTTGTAGATCGAT
TTAGTATTTGTATCCTATTATTTTAAAAATAAAAAG
Found at i:17985254 original size:103 final size:101
Alignment explanation
Indices: 17985044--17985256 Score: 241
Period size: 103 Copynumber: 2.1 Consensus size: 101
17985034 AAATTGATTT
*
17985044 ATAGAATTATTTGTAGATCGATTTAGTATTTGTATCCTATTATTTTAAAAATAAAAAGTTATTTT
1 ATAGAATTATTTGTAGATCGATTTAGTATTTGTATCCTATTATTTTAAAAATAAAAAGTAATTTT
* * *** *** *
17985109 AAATAATAATAACTTTATTATTTTTAATAAATTGATTT
66 AAATAATAATAA--TTAATAATGCAAATAAACAAATTA
*
17985147 ATAGAATTATTTGTAGATTGATTTAGTATTTGTATCCTATTATTTTAAAAATAAAAAGTAATTTT
1 ATAGAATTATTTGTAGATCGATTTAGTATTTGTATCCTATTATTTTAAAAATAAAAAGTAA-TTT
**
17985212 TGTTATAA-AATAA-TAATAATGCAAATAACACAAATATA
65 T-AAATAATAATAATTAATAATGCAAATAA-ACAAAT-TA
17985250 ATAGAAT
1 ATAGAAT
17985257 AGAATAAAGA
Statistics
Matches: 93, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
101 10 0.11
102 3 0.03
103 67 0.72
104 9 0.10
105 4 0.04
ACGTcount: A:0.43, C:0.04, G:0.08, T:0.44
Consensus pattern (101 bp):
ATAGAATTATTTGTAGATCGATTTAGTATTTGTATCCTATTATTTTAAAAATAAAAAGTAATTTT
AAATAATAATAATTAATAATGCAAATAAACAAATTA
Found at i:17987894 original size:64 final size:64
Alignment explanation
Indices: 17987824--17987943 Score: 204
Period size: 64 Copynumber: 1.9 Consensus size: 64
17987814 TAACTGATTC
*
17987824 CAACTAAATAGTCACCTGCAAACATTTATTAACAAACACATTTAAACACACTAAACTTAATAAG
1 CAACTAAATAGTCACCTGCAAACATTTATTAACAAACACATTAAAACACACTAAACTTAATAAG
* * *
17987888 CAACTAAATAGTCACTTGCAAGCATTTATTAACAAACACATTAAAACACATTAAAC
1 CAACTAAATAGTCACCTGCAAACATTTATTAACAAACACATTAAAACACACTAAAC
17987944 ACATTTAAAC
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 52 1.00
ACGTcount: A:0.48, C:0.22, G:0.05, T:0.25
Consensus pattern (64 bp):
CAACTAAATAGTCACCTGCAAACATTTATTAACAAACACATTAAAACACACTAAACTTAATAAG
Found at i:17987945 original size:9 final size:9
Alignment explanation
Indices: 17987921--17987957 Score: 56
Period size: 10 Copynumber: 3.9 Consensus size: 9
17987911 ATTTATTAAC
17987921 AAACACATT
1 AAACACATT
17987930 AAAACACATT
1 -AAACACATT
17987940 AAACACATTT
1 AAACACA-TT
17987950 AAACACAT
1 AAACACAT
17987958 ATTAGACTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 8 0.31
10 18 0.69
ACGTcount: A:0.57, C:0.22, G:0.00, T:0.22
Consensus pattern (9 bp):
AAACACATT
Found at i:17987945 original size:19 final size:19
Alignment explanation
Indices: 17987921--17987957 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
17987911 ATTTATTAAC
17987921 AAACACATTAAAACACATT
1 AAACACATTAAAACACATT
*
17987940 AAACACATTTAAACACAT
1 AAACACATTAAAACACAT
17987958 ATTAGACTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.57, C:0.22, G:0.00, T:0.22
Consensus pattern (19 bp):
AAACACATTAAAACACATT
Found at i:17988087 original size:19 final size:19
Alignment explanation
Indices: 17988060--17988152 Score: 79
Period size: 19 Copynumber: 5.1 Consensus size: 19
17988050 TTATTCCAGC
*
17988060 AACTAAATTAACTAAGATG
1 AACTTAATTAACTAAGATG
*
17988079 AACTTAATTAACTAATATG
1 AACTTAATTAACTAAGATG
* * *
17988098 -A-GTAATTTATTCT-AG--C
1 AACTTAA-TTA-ACTAAGATG
17988114 AACTTAATTAACTAAGATG
1 AACTTAATTAACTAAGATG
*
17988133 AACTCAATTAACTAAGATG
1 AACTTAATTAACTAAGATG
17988152 A
1 A
17988153 GTAATTTATT
Statistics
Matches: 57, Mismatches: 10, Indels: 14
0.70 0.12 0.17
Matches are distributed among these distances:
16 2 0.04
17 9 0.16
18 8 0.14
19 38 0.67
ACGTcount: A:0.46, C:0.12, G:0.10, T:0.32
Consensus pattern (19 bp):
AACTTAATTAACTAAGATG
Found at i:17988115 original size:54 final size:54
Alignment explanation
Indices: 17988050--17988175 Score: 216
Period size: 54 Copynumber: 2.3 Consensus size: 54
17988040 CAATAATAAA
* *
17988050 TTATTCCAGCAACTAAATTAACTAAGATGAACTTAATTAACTAATATGAGTAAT
1 TTATTCCAGCAACTAAATTAACTAAGATGAACTCAATTAACTAAGATGAGTAAT
* *
17988104 TTATTCTAGCAACTTAATTAACTAAGATGAACTCAATTAACTAAGATGAGTAAT
1 TTATTCCAGCAACTAAATTAACTAAGATGAACTCAATTAACTAAGATGAGTAAT
17988158 TTATTCCAGCAACTAAAT
1 TTATTCCAGCAACTAAAT
17988176 ACTTATTCCA
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 66 1.00
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (54 bp):
TTATTCCAGCAACTAAATTAACTAAGATGAACTCAATTAACTAAGATGAGTAAT
Found at i:17999913 original size:28 final size:28
Alignment explanation
Indices: 17999882--17999936 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
17999872 TTAAATGTCT
17999882 ATTTAATTATAA-ATAATTATATAATAAA
1 ATTTAATT-TAAGATAATTATATAATAAA
* *
17999910 ATTTAATTTAAGATATTTTTATAATAA
1 ATTTAATTTAAGATAATTATATAATAA
17999937 TTAATTTCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.12
28 21 0.88
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (28 bp):
ATTTAATTTAAGATAATTATATAATAAA
Found at i:18000655 original size:9 final size:9
Alignment explanation
Indices: 18000641--18000666 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
18000631 TTTATTTTTA
18000641 AAAATATTT
1 AAAATATTT
18000650 AAAATATTT
1 AAAATATTT
18000659 AAAATATT
1 AAAATATT
18000667 AATATAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
AAAATATTT
Found at i:18002432 original size:8 final size:8
Alignment explanation
Indices: 18002408--18002448 Score: 61
Period size: 8 Copynumber: 5.5 Consensus size: 8
18002398 AAAATTAAAA
18002408 TTTA-ATT
1 TTTATATT
18002415 TTTATA--
1 TTTATATT
18002421 TTTATATT
1 TTTATATT
18002429 TTTATATT
1 TTTATATT
18002437 TTTATATT
1 TTTATATT
18002445 TTTA
1 TTTA
18002449 CTTTTAGAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.19
7 4 0.13
8 21 0.68
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (8 bp):
TTTATATT
Found at i:18010747 original size:18 final size:18
Alignment explanation
Indices: 18010724--18010762 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
18010714 CAACATCAAT
18010724 ATTATCATCAGTTTTT-AC
1 ATTATCATCA-TTTTTCAC
*
18010742 ATTATCTTCATTTTTCAC
1 ATTATCATCATTTTTCAC
18010760 ATT
1 ATT
18010763 TGGTGGTGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.26, C:0.18, G:0.03, T:0.54
Consensus pattern (18 bp):
ATTATCATCATTTTTCAC
Found at i:18012329 original size:22 final size:22
Alignment explanation
Indices: 18012269--18012326 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 22
18012259 AATCTTCAAG
18012269 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
18012288 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
18012310 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
18012327 GATTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.39
22 8 0.24
23 12 0.36
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:18012336 original size:22 final size:22
Alignment explanation
Indices: 18012295--18012340 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
18012285 TATGATATGC
*
18012295 AATCTTAGAAGATATGATTTTGT
1 AATCTTAGAAGATAT-AATTTGT
*
18012318 AATCTTAG-AGATTTAATTTGT
1 AATCTTAGAAGATATAATTTGT
18012339 AA
1 AA
18012341 ATACCCTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 8 0.38
22 5 0.24
23 8 0.38
ACGTcount: A:0.37, C:0.04, G:0.15, T:0.43
Consensus pattern (22 bp):
AATCTTAGAAGATATAATTTGT
Found at i:18012339 original size:21 final size:23
Alignment explanation
Indices: 18012282--18012340 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 23
18012272 ATGCAATCTT
* *
18012282 AGATATG-ATATGCAATCTTAGA
1 AGATATGAATTTGTAATCTTAGA
*
18012304 AGATATGATTTTGTAATCTTAG-
1 AGATATGAATTTGTAATCTTAGA
*
18012326 AGAT-TTAATTTGTAA
1 AGATATGAATTTGTAA
18012341 ATACCCTTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 9 0.29
22 11 0.35
23 11 0.35
ACGTcount: A:0.37, C:0.05, G:0.17, T:0.41
Consensus pattern (23 bp):
AGATATGAATTTGTAATCTTAGA
Found at i:18019304 original size:24 final size:24
Alignment explanation
Indices: 18019272--18019352 Score: 119
Period size: 24 Copynumber: 3.4 Consensus size: 24
18019262 GTCCCAAAAG
*
18019272 TACATTGGATTGAACCTTGAAGAT
1 TACAGTGGATTGAACCTTGAAGAT
* *
18019296 TACATTGGACTGAA-CTTAGAAGAT
1 TACAGTGGATTGAACCTT-GAAGAT
18019320 TACAGTGGATTGAACCTTGAAGAT
1 TACAGTGGATTGAACCTTGAAGAT
18019344 TACAGTGGA
1 TACAGTGGA
18019353 GGCAATCCGA
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
23 3 0.06
24 46 0.88
25 3 0.06
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.30
Consensus pattern (24 bp):
TACAGTGGATTGAACCTTGAAGAT
Found at i:18019739 original size:45 final size:44
Alignment explanation
Indices: 18019636--18020385 Score: 494
Period size: 45 Copynumber: 16.6 Consensus size: 44
18019626 GCACAAATCC
* * * * **
18019636 TATCTCCATGAGGTTGCAGTAGAGCGGATTAAAGTTACAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAAACAAGTCT
* *
18019680 TATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGAAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAAA-CAAGTCT
* * * * * * *
18019725 TAT-TCCCCTAAAGTTGTAGTGGGGCAGACTGAAGATGACAAATCT
1 TATCT-CCCTGAAGTTGCAGTGGAGCAGATTAAAGA-AACAAGTCT
* * * **
18019770 TATCTCCTTGAAGTTGCTGTGGAGCGGATTAAAGTTACAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAAACAAGTCT
* * *
18019814 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATTC-
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-AAACAAGTCT
** * * **
18019858 TATCTCCCCAAAAGTTGCAGTAGAGCGGATTAAAGTTACAAGTCT
1 TATCT-CCCTGAAGTTGCAGTGGAGCAGATTAAAGAAACAAGTCT
* *
18019903 TATCT-CCTAGAAGTTGCAGTGGAGCAGACTGAAGAAAGCAAGTCT
1 TATCTCCCT-GAAGTTGCAGTGGAGCAGATTAAAGAAA-CAAGTCT
* * * * **
18019948 TATCCCCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCGAA-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGA-AAC-AAGTCT
* * * * * *
18019993 TATCTCCTTGAAGTTGCAGTGAAGCAGATCAAAGCCAATAA-TCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-AAACAAGTCT
* * **
18020037 TATCTCCCTGAAGTTGCAGTGAAGCGGATTAAAGTTACAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAAACAAGTCT
* * *
18020081 TATCTCCCTGAAGTTGCAGTGGAACAGACTGAAGAAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAAA-CAAGTCT
* * * ** *
18020126 TATCCCCCTGAAGTTGTAGT-GAGGCAGACTAAAGATGGCAAATCT
1 TATCTCCCTGAAGTTGCAGTGGA-GCAGATTAAAGA-AACAAGTCT
* * * * *
18020171 TATCTTCCTGAATTTGCAGTGGAGCAGATTAAAGCTAATAA-TCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-AAACAAGTCT
* * * *
18020215 TATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAGATAGCGAA-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGA-AAC-AAGTCT
* * *
18020260 TATTTCCCT-AGCGTTGCAATGGAGCAGATTAAAGCTACAA-ATTATGGCGTATCT
1 TATCTCCCTGA-AGTTGCAGTGGAGCAGATTAAAG--A-AACA--A----G--TCT
* * ** * *
18020314 TATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAAACAAGTCT
* *
18020358 TATCTCCTTGAAGTTGCAGCGGAGCAGA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA
18020386 CTGAAGACAG
Statistics
Matches: 546, Mismatches: 125, Indels: 70
0.74 0.17 0.09
Matches are distributed among these distances:
43 5 0.01
44 228 0.42
45 267 0.49
46 10 0.02
47 3 0.01
50 1 0.00
51 1 0.00
54 30 0.05
55 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGAAACAAGTCT
Found at i:18019935 original size:178 final size:176
Alignment explanation
Indices: 18019631--18020235 Score: 693
Period size: 178 Copynumber: 3.4 Consensus size: 176
18019621 TGAAAGCACA
* * * * * ** * *
18019631 AATCCTATCTCCATGAGGTTGCAGTAGAGCGGATTAAAGTTACA-AGTCTTATCTCCCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA-ATAATCCTATCTCCCTGAAGTT
* * * ** * * *
18019695 GCAGTGGAACAGATTGAAGAAAGCAAGTCTTATTCCCCTA-AAGTTGTAGTGGGGCAGACTGAAG
65 GCAGT-GAGCGGATTAAAGTTA-CAAGTCTTA-TCTCCTAGAAGTTGCAGTGGAGCAGACTGAAG
* * * * * * **
18019759 -ATGACAAATCTTATCTCCTTGAAGTTGCTGTGGAGCGGATTAAAG-TTAC
127 AAAG-CAAGTCTTATCCCCCTGAAGTTGCTGTGGAGCAGACTAAAGATGGC
* **
18019808 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATTCTATCTCCCCAAAAGT
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCT-CCCTGAAGT
18019873 TGCAGTAGAGCGGATTAAAGTTACAAGTCTTATCTCCTAGAAGTTGCAGTGGAGCAGACTGAAGA
64 TGCAGT-GAGCGGATTAAAGTTACAAGTCTTATCTCCTAGAAGTTGCAGTGGAGCAGACTGAAGA
* * *
18019938 AAGCAAGTCTTATCCCCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGC
128 AAGCAAGTCTTATCCCCCTGAAGTTGCTGTGGAGCAGACTAAAGATGGC
* * *
18019987 GAATCTTATCTCCTTGAAGTTGCAGTGAAGCAGATCAAAGCCAATAATCCTATCTCCCTGAAGTT
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAAGTT
*
18020052 GCAGTGAAGCGGATTAAAGTTACAAGTCTTATCTCCCT-GAAGTTGCAGTGGAACAGACTGAAGA
65 GCAGTG-AGCGGATTAAAGTTACAAGTCTTATCT-CCTAGAAGTTGCAGTGGAGCAGACTGAAGA
18020116 AAGCAAGTCTTATCCCCCTGAAGTTG-TAGT-GAGGCAGACTAAAGATGGC
128 AAGCAAGTCTTATCCCCCTGAAGTTGCT-GTGGA-GCAGACTAAAGATGGC
* * *
18020165 AAATCTTATCTTCCTGAATTTGCAGTGGAGCAGATTAAAGCTAATAATCCTATCTCCCTGAAGTT
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAAGTT
18020230 GCAGTG
65 GCAGTG
18020236 GAGCAAACTG
Statistics
Matches: 368, Mismatches: 49, Indels: 21
0.84 0.11 0.05
Matches are distributed among these distances:
177 11 0.03
178 276 0.75
179 79 0.21
180 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (176 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAAGTTG
CAGTGAGCGGATTAAAGTTACAAGTCTTATCTCCTAGAAGTTGCAGTGGAGCAGACTGAAGAAAG
CAAGTCTTATCCCCCTGAAGTTGCTGTGGAGCAGACTAAAGATGGC
Found at i:18020043 original size:223 final size:223
Alignment explanation
Indices: 18019648--18020070 Score: 661
Period size: 223 Copynumber: 1.9 Consensus size: 223
18019638 TCTCCATGAG
*
18019648 GTTGCAGTAGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAA
1 GTTGCAGTAGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACTGAA
* *
18019713 GAAAGCAAGTCTTATTCCCCTAAAGTTGTAGTGGGGCAGACTGAAGATGACAAATCTTATCTCCT
66 GAAAGCAAGTCTTATCCCCCTAAAGTTGCAGTGGGGCAGACTGAAGATGACAAATCTTATCTCCT
* * * * ** * * *
18019778 TGAAGTTGCTGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
131 TGAAGTTGCAGTGAAGCAGATCAAAGCCACAAATCCTATCTCCCTGAAGTTGCAGTGAAGCAGAT
18019843 TAAAGCCAATAATTCTATCTCCCCAAAA
196 TAAAGCCAATAATTCTATCTCCCCAAAA
*
18019871 GTTGCAGTAGAGCGGATTAAAGTTACAAGTCTTATCT-CCTAGAAGTTGCAGTGGAGCAGACTGA
1 GTTGCAGTAGAGCGGATTAAAGTTACAAGTCTTATCTCCCT-GAAGTTGCAGTGGAACAGACTGA
* * *
18019935 AGAAAGCAAGTCTTATCCCCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCGAATCTTATCTCC
65 AGAAAGCAAGTCTTATCCCCCTAAAGTTGCAGTGGGGCAGACTGAAGATGACAAATCTTATCTCC
*
18020000 TTGAAGTTGCAGTGAAGCAGATCAAAGCCA-ATAATCCTATCTCCCTGAAGTTGCAGTGAAGCGG
130 TTGAAGTTGCAGTGAAGCAGATCAAAGCCACA-AATCCTATCTCCCTGAAGTTGCAGTGAAGCAG
18020064 ATTAAAG
194 ATTAAAG
18020071 TTACAAGTCT
Statistics
Matches: 181, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
222 4 0.02
223 177 0.98
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (223 bp):
GTTGCAGTAGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACTGAA
GAAAGCAAGTCTTATCCCCCTAAAGTTGCAGTGGGGCAGACTGAAGATGACAAATCTTATCTCCT
TGAAGTTGCAGTGAAGCAGATCAAAGCCACAAATCCTATCTCCCTGAAGTTGCAGTGAAGCAGAT
TAAAGCCAATAATTCTATCTCCCCAAAA
Found at i:18020087 original size:223 final size:221
Alignment explanation
Indices: 18019648--18020240 Score: 656
Period size: 223 Copynumber: 2.7 Consensus size: 221
18019638 TCTCCATGAG
* *
18019648 GTTGCAGTAGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAA
1 GTTGCAGTAGAGCGGATTAAAGTTACAAGTCTTATCT-CCTGAAGTTGCAGTGGAGCAGACTGAA
* * *
18019713 GAAAGCAAGTCTTATTCCCCTAAAGTTGTAGTGGGGCAGACTGAAGATGACAAATCTTATCTCCT
65 GAAAGCAAGTCTTATCCCCCTGAAGTTGCAGTGGGGCAGACTGAAGATGACAAATCTTATCTCCT
* * * * ** * * *
18019778 TGAAGTTGCTGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
130 TGAAGTTGCAGTGAAGCAGATCAAAGCCACAAATCCTATCTCCCTGAAGTTGCAGTGAAGCAGAT
* *
18019843 TAAAGCCAATAATTCTATCTCCCCAAAA
195 TAAAGCCAACAAGTCTATCT-CCCAAAA
18019871 GTTGCAGTAGAGCGGATTAAAGTTACAAGTCTTATCTCCTAGAAGTTGCAGTGGAGCAGACTGAA
1 GTTGCAGTAGAGCGGATTAAAGTTACAAGTCTTATCTCCT-GAAGTTGCAGTGGAGCAGACTGAA
* *
18019936 GAAAGCAAGTCTTATCCCCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCGAATCTTATCTCCT
65 GAAAGCAAGTCTTATCCCCCTGAAGTTGCAGTGGGGCAGACTGAAGATGACAAATCTTATCTCCT
*
18020001 TGAAGTTGCAGTGAAGCAGATCAAAGCCA-ATAATCCTATCTCCCTGAAGTTGCAGTGAAGCGGA
130 TGAAGTTGCAGTGAAGCAGATCAAAGCCACA-AATCCTATCTCCCTGAAGTTGCAGTGAAGCAGA
** **
18020065 TTAAAG-TTACAAGTCTTATCTCCCTGAA
194 TTAAAGCCAACAAGTC-TATCTCCCAAAA
* * * * * ** * * *
18020093 GTTGCAGTGGAACAGACTGAAGAAAGCAAGTCTTATCCCCCTGAAGTTGTAGT-GAGGCAGACTA
1 GTTGCAGTAGAGCGGATTAAAGTTA-CAAGTCTTAT-CTCCTGAAGTTGCAGTGGA-GCAGACTG
** * ** * * * * * *
18020157 AAGATGGCAAATCTTATCTTCCTGAATTTGCAGTGGAGCAGATTAAAGCT-A-ATAATCCTATCT
63 AAGAAAGCAAGTCTTATCCCCCTGAAGTTGCAGTGGGGCAGACTGAAGATGACA-AATCTTATCT
* *
18020220 CCCTGAAGTTGCAGTGGAGCA
127 CCTTGAAGTTGCAGTGAAGCA
18020241 AACTGAAGAT
Statistics
Matches: 315, Mismatches: 48, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
222 62 0.20
223 249 0.79
224 4 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (221 bp):
GTTGCAGTAGAGCGGATTAAAGTTACAAGTCTTATCTCCTGAAGTTGCAGTGGAGCAGACTGAAG
AAAGCAAGTCTTATCCCCCTGAAGTTGCAGTGGGGCAGACTGAAGATGACAAATCTTATCTCCTT
GAAGTTGCAGTGAAGCAGATCAAAGCCACAAATCCTATCTCCCTGAAGTTGCAGTGAAGCAGATT
AAAGCCAACAAGTCTATCTCCCAAAA
Found at i:18020246 original size:134 final size:132
Alignment explanation
Indices: 18019628--18020405 Score: 649
Period size: 134 Copynumber: 5.7 Consensus size: 132
18019618 CAGTGAAAGC
* * *
18019628 ACAAATCCTATCTCCATGAGGTTGCAGTAGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAG
1 ACAAATCTTATCTCC-TGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAG
* * * * * *
18019693 TTGCAGTGGAACAGATTGAAGAAAGCAAGTCTTATTCCCCTAAAGTTGTAGTGGGGCAGACTGAA
65 TTGCAGTGGAGCAGACTGAAGAAAGCAA-TCTTATCCCCCTAAAGTTGCAGTGAGGCAGACTAAA
18019758 GATG
129 GATG
*
18019762 ACAAATCTTATCTCCTTGAAGTTGCTGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAG
1 ACAAATCTTATCTCC-TGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAG
* * * * * * *
18019827 TTGCAGTGGAGCAGATTAAAGCCAA-TAAT-TCTATCTCCCCAAAAGTTGCAGT-AGAGCGGATT
65 TTGCAGTGGAGCAGACTGAAG-AAAGCAATCT-TATC-CCCCTAAAGTTGCAGTGAG-GCAGACT
*
18019889 AAAG-TT
126 AAAGATG
* * * * ** *
18019895 ACAAGTCTTATCTCCTAGAAGTTGCAGTGGAGCAGACTGAAGAAAGCAAGTCTTATCCCCCTGAA
1 ACAAATCTTATCTCCT-GAAGTTGCAGTGGAGCGGATTAAAGTTA-CAAGTCTTATCTCCCTGAA
* ** * * * * *
18019960 GTTGCAGTGGGGCAGACTGAAGATGGCGAATCTTATCTCCTTGAAGTTGCAGTGAAGCAGA-TCA
64 GTTGCAGTGGAGCAGACTGAAGAAAGC-AATCTTATCCCCCTAAAGTTGCAGTGAGGCAGACTAA
18020024 A-A-G
128 AGATG
* * *
18020027 CCAATAATCCTATCTCCCTGAAGTTGCAGTGAAGCGGATTAAAGTTACAAGTCTTATCTCCCTGA
1 AC-A-AATCTTATCT-CCTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGA
* * *
18020092 AGTTGCAGTGGAACAGACTGAAGAAAGCAAGTCTTATCCCCCTGAAGTTGTAGTGAGGCAGACTA
63 AGTTGCAGTGGAGCAGACTGAAGAAAGCAA-TCTTATCCCCCTAAAGTTGCAGTGAGGCAGACTA
18020157 AAGATG
127 AAGATG
* * * * * *
18020163 GCAAATCTTATCTTCCTGAATTTGCAGTGGAGCAGATTAAAGCTA-ATAATCCTATCTCCCTGAA
1 ACAAATCTTATC-TCCTGAAGTTGCAGTGGAGCGGATTAAAGTTACA-AGTCTTATCTCCCTGAA
* * ** ** * *
18020227 GTTGCAGTGGAGCAAACTGAAGATAGCGAATCTTATTTCCCTAGCGTTGCAATG-GAGCAGATTA
64 GTTGCAGTGGAGCAGACTGAAGAAAGC-AATCTTATCCCCCTAAAGTTGCAGTGAG-GCAGACTA
*
18020291 AAGCT-
127 AAGATG
* * ** * *
18020296 ACAAATTATGGCGTATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTAT
1 AC--A--A------ATCTTATC-TCCTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTAT
* * *
18020361 CTCCTTGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTAT
55 CTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAGC-AATCTTAT
18020406 TTCCCTAGTG
Statistics
Matches: 520, Mismatches: 91, Indels: 57
0.78 0.14 0.09
Matches are distributed among these distances:
132 5 0.01
133 117 0.22
134 291 0.56
135 19 0.04
136 3 0.01
137 1 0.00
143 84 0.16
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (132 bp):
ACAAATCTTATCTCCTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGAAGT
TGCAGTGGAGCAGACTGAAGAAAGCAATCTTATCCCCCTAAAGTTGCAGTGAGGCAGACTAAAGA
TG
Found at i:18020431 original size:143 final size:143
Alignment explanation
Indices: 18020167--18020438 Score: 402
Period size: 143 Copynumber: 1.9 Consensus size: 143
18020157 AAGATGGCAA
* * *
18020167 ATCTTATCTTCCTGAATTTGCAGTGGAGCAGATTAAAGCTAATAATCCTATCTCCCTGAAGTTGC
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAACAAGCCTATCTCCCTGAAGTTGC
* * *
18020232 AGTGGAGCAAACTGAAGATAGCGAATCTTATTTCCCTAGCGTTGCAATGGAGCAGATTAAAGCTA
66 AGCGGAGCAAACTGAAGACAGCGAATCTTATTTCCCTAGCGTTGCAATGGAACAGATTAAAGCTA
18020297 CAAATTATGGCGT
131 CAAATTATGGCGT
* * * *
18020310 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGC-CACCAGCCTTATCTCCTTGAAGTTG
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAACAAGCC-TATCTCCCTGAAGTTG
* * * *
18020374 CAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTAGTGTTGTAGTGGAACAGATTAAAGCT
65 CAGCGGAGCAAACTGAAGACAGCGAATCTTATTTCCCTAGCGTTGCAATGGAACAGATTAAAGCT
18020439 GAAGACAGCG
Statistics
Matches: 114, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
142 4 0.04
143 110 0.96
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (143 bp):
ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAACAAGCCTATCTCCCTGAAGTTGC
AGCGGAGCAAACTGAAGACAGCGAATCTTATTTCCCTAGCGTTGCAATGGAACAGATTAAAGCTA
CAAATTATGGCGT
Found at i:18020483 original size:51 final size:51
Alignment explanation
Indices: 18020386--18020489 Score: 154
Period size: 51 Copynumber: 2.0 Consensus size: 51
18020376 GCGGAGCAGA
** * *
18020386 CTGAAGACAGCGAATCTTATTTCCCTAGTGTTGTAGTGGAACAGATTAAAG
1 CTGAAGACAGCGAATCTTATTTCCCTAGCATTGCAGTAGAACAGATTAAAG
**
18020437 CTGAAGACAGCGAATCTTATTTCCCTAGCATTGCAGTAGAGTAGATTAAAG
1 CTGAAGACAGCGAATCTTATTTCCCTAGCATTGCAGTAGAACAGATTAAAG
18020488 CT
1 CT
18020490 ACAACTTATG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (51 bp):
CTGAAGACAGCGAATCTTATTTCCCTAGCATTGCAGTAGAACAGATTAAAG
Found at i:18020599 original size:194 final size:195
Alignment explanation
Indices: 18020243--18020604 Score: 541
Period size: 194 Copynumber: 1.9 Consensus size: 195
18020233 GTGGAGCAAA
* * *
18020243 CTGAAGATAGCGAATCTTATTTCCCTAGCGTTGCAATGGAGCAGATTAAAGCTACAAATTATGGC
1 CTGAAGACAGCGAATCTTATTTCCCTAGCATTGCAATAGAGCAGATTAAAGCTACAAATTATGGC
* * * * * *
18020308 GTATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCTTGAAGTT
66 GGATCTTATCTTCCTGAAGTTACAATGGAGCAAATTGAAGCCACCAACCTTATCTCCCTGAAGTT
*
18020373 GCAGCGGAGCAGACTGAAGACAGCGAATCTTAT-TTCCCTAGTGTTGTAGTGGAACAGATTAAAG
131 GCAGCGGAGCAGACTGAAGACAACGAATCTTATCTTCCCTAGTGTTGTAGTGGAACAGATTAAAG
* * *
18020437 CTGAAGACAGCGAATCTTATTTCCCTAGCATTGCAGTAGAGTAGATTAAAGCTACAACTTATGGC
1 CTGAAGACAGCGAATCTTATTTCCCTAGCATTGCAATAGAGCAGATTAAAGCTACAAATTATGGC
*
18020502 GGATCTTATCTTCCTGAAGTTACAATAGG-GCAAATTGAAGCCACCAACCTTATCTCCCTGAATT
66 GGATCTTATCTTCCTGAAGTTACAAT-GGAGCAAATTGAAGCCACCAACCTTATCTCCCTGAAGT
* *
18020566 TGCAGCGGAGCAGACTGATGATAAC-AGATCTTATCTTCC
130 TGCAGCGGAGCAGACTGAAGACAACGA-ATCTTATCTTCC
18020605 TGTATTGGCA
Statistics
Matches: 149, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
193 1 0.01
194 142 0.95
195 6 0.04
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (195 bp):
CTGAAGACAGCGAATCTTATTTCCCTAGCATTGCAATAGAGCAGATTAAAGCTACAAATTATGGC
GGATCTTATCTTCCTGAAGTTACAATGGAGCAAATTGAAGCCACCAACCTTATCTCCCTGAAGTT
GCAGCGGAGCAGACTGAAGACAACGAATCTTATCTTCCCTAGTGTTGTAGTGGAACAGATTAAAG
Found at i:18020654 original size:89 final size:89
Alignment explanation
Indices: 18020538--18021047 Score: 633
Period size: 89 Copynumber: 5.7 Consensus size: 89
18020528 AGGGCAAATT
* * * * *
18020538 GAAGCCACCAACCTTATCTCCCTGAATTTGCAGCGGAGCAGACTGATGATAACAGATCTTATCTT
1 GAAGACACCAACCTTACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAACAGATCTTGTCTT
18020603 CCTGTATTGGCAGCGAAGTAGATC
66 CCTGTATTGGCAGCGAAGTAGATC
* * * * * *
18020627 GAAGACACCAGCCTTATCTCCTTGAATTTGCAGCAGAGCAGACTGATGATAACAGATCTTGTCTT
1 GAAGACACCAACCTTACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAACAGATCTTGTCTT
* *
18020692 CCAGTATTGGCAGCGAAGTAGATT
66 CCTGTATTGGCAGCGAAGTAGATC
* * * * ** *
18020716 GAAGACACTAGCTTTGCCTCCCTGAGTTTGCAATGGAGCAGACTAAAGATAACAGATCTTGTCTT
1 GAAGACACCAACCTTACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAACAGATCTTGTCTT
*
18020781 CCTGTATTGGCAGCGAAGCAGATC
66 CCTGTATTGGCAGCGAAGTAGATC
* *
18020805 GAAGACACCAACCTTACCTCCCTGAGTTTGCAGCAGAGCAGACTGAAGATAATAGATCTTGTCTT
1 GAAGACACCAACCTTACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAACAGATCTTGTCTT
* * *
18020870 TCTGTATTGGCAGCAAAGCAGATC
66 CCTGTATTGGCAGCGAAGTAGATC
* * *
18020894 GAAGACACCAACCTTGCCTCCCTGAGTTTGCAGCGGAGCAGACTAAAGATAGCAGATCTTGTCTT
1 GAAGACACCAACCTTACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAACAGATCTTGTCTT
* *
18020959 CCTGTATTAGCAACGAAGTAGATC
66 CCTGTATTGGCAGCGAAGTAGATC
* ** ** * * * * * **
18020983 AAAGACACCAGTCTTGTCTCTCTGAGTTAGCAGCGGAGTAGACTAAAAATAGTAGATCTTGTCTT
1 GAAGACACCAACCTTACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAACAGATCTTGTCTT
18021048 ATTGTACTGG
Statistics
Matches: 370, Mismatches: 51, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
89 370 1.00
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (89 bp):
GAAGACACCAACCTTACCTCCCTGAGTTTGCAGCGGAGCAGACTGAAGATAACAGATCTTGTCTT
CCTGTATTGGCAGCGAAGTAGATC
Found at i:18020660 original size:44 final size:43
Alignment explanation
Indices: 18020537--18020942 Score: 138
Period size: 44 Copynumber: 9.1 Consensus size: 43
18020527 TAGGGCAAAT
* * *
18020537 TGAAGCCACCAACCTTATCTCCCTGAATTTGCAGCGGAGCAGAC
1 TGAAGACACCAGCCTTATCT-CCTGAATTTGCAGCGAAGCAGAC
* * * * * * *
18020581 TGATGATAACAGATCTTATCTTCCTGTATTGGCAGCGAAGTAGA-
1 TGAAGACACCAG-CCTTATC-TCCTGAATTTGCAGCGAAGCAGAC
18020625 TCGAAGACACCAGCCTTATCTCCTTGAATTTGCAGC-AGAGCAGAC
1 T-GAAGACACCAGCCTTATCTCC-TGAATTTGCAGCGA-AGCAGAC
* * * * * * * * * *
18020670 TGATGATAACAGATCTTGTCTTCCAGTATTGGCAGCGAAGTAGAT
1 TGAAGACACCAG-CCTTATC-TCCTGAATTTGCAGCGAAGCAGAC
* * ** * ** *
18020715 TGAAGACACTAGCTTTGCCTCCCTGAGTTTGCAATGGAGCAGAC
1 TGAAGACACCAGCCTTATCT-CCTGAATTTGCAGCGAAGCAGAC
* * * * * * *
18020759 TAAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAGA-
1 TGAAGACACCAG-CCTTATC-TCCTGAATTTGCAGCGAAGCAGAC
* * *
18020803 TCGAAGACACCAACCTTACCTCCCTGAGTTTGCAGC-AGAGCAGAC
1 T-GAAGACACCAGCCTTATCT-CCTGAATTTGCAGCGA-AGCAGAC
* ** * * * * * *
18020848 TGAAGATAATAGATCTTGTCTTTCTGTATTGGCAGCAAAGCAGA-
1 TGAAGACACCAG-CCTTATC-TCCTGAATTTGCAGCGAAGCAGAC
* ** * *
18020892 TCGAAGACACCAACCTTGCCTCCCTGAGTTTGCAGCGGAGCAGAC
1 T-GAAGACACCAGCCTTATCT-CCTGAATTTGCAGCGAAGCAGAC
*
18020937 TAAAGA
1 TGAAGA
18020943 TAGCAGATCT
Statistics
Matches: 250, Mismatches: 90, Indels: 44
0.65 0.23 0.11
Matches are distributed among these distances:
43 8 0.03
44 118 0.47
45 116 0.46
46 8 0.03
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (43 bp):
TGAAGACACCAGCCTTATCTCCTGAATTTGCAGCGAAGCAGAC
Found at i:18020990 original size:267 final size:267
Alignment explanation
Indices: 18020538--18021070 Score: 699
Period size: 267 Copynumber: 2.0 Consensus size: 267
18020528 AGGGCAAATT
* * * *
18020538 GAAGCCACCAACCTTATCTCCCTGAATTTGCAGCGGAGCAGACTGATGATAACAGATCTTATCTT
1 GAAGACACCAACCTTACCTCCCTGAATTTGCAGCAGAGCAGACTGAAGATAACAGATCTTATCTT
* * * * *
18020603 CCTGTATTGGCAGCGAAGTAGATCGAAGACACCAGCCTTATCTCCTTGAATTTGCAGCAGAGCAG
66 CCTGTATTGGCAGCAAAGCAGATCGAAGACACCAACCTTACCTCCCTGAATTTGCAGCAGAGCAG
* * * * ** *
18020668 ACTGATGATAACAGATCTTGTCTTCCAGTATTGGCAGCGAAGTAGATTGAAGACACTAG-CTTTG
131 ACTAAAGATAACAGATCTTGTCTTCCAGTATTAGCAACGAAGTAGATCAAAGACACCAGTC-TTG
* * * * * *
18020732 CCTCCCTGAGTTTGCAATGGAGCAGACTAAAGATAACAGATCTTGTCTTCCTGTATTGGCAGCGA
195 CCTCCCTGAGTTAGCAACGGAGCAGACTAAAAATAACAGATCTTGTCTTACTGTACTGGAAGCGA
18020797 AGCAGATC
260 AGCAGATC
* * *
18020805 GAAGACACCAACCTTACCTCCCTGAGTTTGCAGCAGAGCAGACTGAAGATAATAGATCTTGTCTT
1 GAAGACACCAACCTTACCTCCCTGAATTTGCAGCAGAGCAGACTGAAGATAACAGATCTTATCTT
* * * *
18020870 TCTGTATTGGCAGCAAAGCAGATCGAAGACACCAACCTTGCCTCCCTGAGTTTGCAGCGGAGCAG
66 CCTGTATTGGCAGCAAAGCAGATCGAAGACACCAACCTTACCTCCCTGAATTTGCAGCAGAGCAG
* * *
18020935 ACTAAAGATAGCAGATCTTGTCTTCCTGTATTAGCAACGAAGTAGATCAAAGACACCAGTCTTGT
131 ACTAAAGATAACAGATCTTGTCTTCCAGTATTAGCAACGAAGTAGATCAAAGACACCAGTCTTGC
* * * ** * *
18021000 CTCTCTGAGTTAGCAGCGGAGTAGACTAAAAATAGTAGATCTTGTCTTATTGTACTGGAAGTGAA
196 CTCCCTGAGTTAGCAACGGAGCAGACTAAAAATAACAGATCTTGTCTTACTGTACTGGAAGCGAA
18021065 GCAGAT
261 GCAGAT
18021071 AAAAACCACC
Statistics
Matches: 226, Mismatches: 39, Indels: 2
0.85 0.15 0.01
Matches are distributed among these distances:
267 225 1.00
268 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (267 bp):
GAAGACACCAACCTTACCTCCCTGAATTTGCAGCAGAGCAGACTGAAGATAACAGATCTTATCTT
CCTGTATTGGCAGCAAAGCAGATCGAAGACACCAACCTTACCTCCCTGAATTTGCAGCAGAGCAG
ACTAAAGATAACAGATCTTGTCTTCCAGTATTAGCAACGAAGTAGATCAAAGACACCAGTCTTGC
CTCCCTGAGTTAGCAACGGAGCAGACTAAAAATAACAGATCTTGTCTTACTGTACTGGAAGCGAA
GCAGATC
Found at i:18021010 original size:178 final size:176
Alignment explanation
Indices: 18020537--18021109 Score: 689
Period size: 178 Copynumber: 3.2 Consensus size: 176
18020527 TAGGGCAAAT
* ** * * * *
18020537 TGAAGCCACCAACCTTATCTCCCTGAATTTGCAGCGGAGCAGACTGATGATAACAGATCTTATCT
1 TGAAGACACCAACCTTGCCTCCCTGAGTTTGCAGCGGAGCAGACTAAAGATAACAGATCTTGTCT
*
18020602 TCCTGTATTGGCAGCGAAGTAGATCGAAGACACCAGCCTTATCTCCTTGAATTTGCAGCAGAGCA
66 TCCTGTATTGGCAGCGAAGTAGATCGAAGACACCAGCCTTATCTCC-TGAGTTTGCAGCAGAGCA
* * * * *
18020667 GACTGATGATAACAGATCTTGTCTTCCAGTATTGGCAGCGAAGTAGA
130 GACTGAAGATAATAGATCTTGTCTTTCTGTATTGGCAGCGAAGCAGA
* * * **
18020714 TTGAAGACACTAGCTTTGCCTCCCTGAGTTTGCAATGGAGCAGACTAAAGATAACAGATCTTGTC
1 -TGAAGACACCAACCTTGCCTCCCTGAGTTTGCAGCGGAGCAGACTAAAGATAACAGATCTTGTC
* * *
18020779 TTCCTGTATTGGCAGCGAAGCAGATCGAAGACACCAACCTTACCTCCCTGAGTTTGCAGCAGAGC
65 TTCCTGTATTGGCAGCGAAGTAGATCGAAGACACCAGCCTTATCT-CCTGAGTTTGCAGCAGAGC
*
18020844 AGACTGAAGATAATAGATCTTGTCTTTCTGTATTGGCAGCAAAGCAGA
129 AGACTGAAGATAATAGATCTTGTCTTTCTGTATTGGCAGCGAAGCAGA
*
18020892 TCGAAGACACCAACCTTGCCTCCCTGAGTTTGCAGCGGAGCAGACTAAAGATAGCAGATCTTGTC
1 T-GAAGACACCAACCTTGCCTCCCTGAGTTTGCAGCGGAGCAGACTAAAGATAACAGATCTTGTC
* * * * * * * *
18020957 TTCCTGTATTAGCAACGAAGTAGATCAAAGACACCAGTCTTGTCTCTCTGAGTTAGCAGCGGAGT
65 TTCCTGTATTGGCAGCGAAGTAGATCGAAGACACCAGCCTTATCTC-CTGAGTTTGCAGCAGAGC
* * * * * *
18021022 AGACTAAAAATAGTAGATCTTGTCTTAT-TGTACTGGAAGTGAAGCAGA
129 AGACTGAAGATAATAGATCTTGTCTT-TCTGTATTGGCAGCGAAGCAGA
* * * ** *
18021070 TAAAAACCACCAGCCTTGCCTCTTTGAGTTTGCAGTGGAG
1 TGAAGA-CACCAACCTTGCCTCCCTGAGTTTGCAGCGGAG
18021110 TAGGTTGAAG
Statistics
Matches: 338, Mismatches: 52, Indels: 10
0.85 0.13 0.03
Matches are distributed among these distances:
177 5 0.01
178 330 0.98
179 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (176 bp):
TGAAGACACCAACCTTGCCTCCCTGAGTTTGCAGCGGAGCAGACTAAAGATAACAGATCTTGTCT
TCCTGTATTGGCAGCGAAGTAGATCGAAGACACCAGCCTTATCTCCTGAGTTTGCAGCAGAGCAG
ACTGAAGATAATAGATCTTGTCTTTCTGTATTGGCAGCGAAGCAGA
Found at i:18021112 original size:89 final size:89
Alignment explanation
Indices: 18020543--18021109 Score: 580
Period size: 89 Copynumber: 6.4 Consensus size: 89
18020533 AAATTGAAGC
** * * * *
18020543 CACCAACCTTATCTCCCTGAATTTGCAGCGGAGCAGACTGATGATAACAGATCTTATCTTCCTGT
1 CACCAACCTTGCCTCCCTGAGTTTGCAGCGGAGCAGACTAAAGATAACAGATCTTGTCTTCCTGT
* * *
18020608 ATTGGCAGCGAAGTAGATCGAAGA
66 ATTGGAAGCGAAGCAGATCAAAGA
* ** * * * * * *
18020632 CACCAGCCTTATCTCCTTGAATTTGCAGCAGAGCAGACTGATGATAACAGATCTTGTCTTCCAGT
1 CACCAACCTTGCCTCCCTGAGTTTGCAGCGGAGCAGACTAAAGATAACAGATCTTGTCTTCCTGT
* * **
18020697 ATTGGCAGCGAAGTAGATTGAAGA
66 ATTGGAAGCGAAGCAGATCAAAGA
* * * **
18020721 CACTAGCTTTGCCTCCCTGAGTTTGCAATGGAGCAGACTAAAGATAACAGATCTTGTCTTCCTGT
1 CACCAACCTTGCCTCCCTGAGTTTGCAGCGGAGCAGACTAAAGATAACAGATCTTGTCTTCCTGT
* *
18020786 ATTGGCAGCGAAGCAGATCGAAGA
66 ATTGGAAGCGAAGCAGATCAAAGA
* * * * *
18020810 CACCAACCTTACCTCCCTGAGTTTGCAGCAGAGCAGACTGAAGATAATAGATCTTGTCTTTCTGT
1 CACCAACCTTGCCTCCCTGAGTTTGCAGCGGAGCAGACTAAAGATAACAGATCTTGTCTTCCTGT
* * *
18020875 ATTGGCAGCAAAGCAGATCGAAGA
66 ATTGGAAGCGAAGCAGATCAAAGA
*
18020899 CACCAACCTTGCCTCCCTGAGTTTGCAGCGGAGCAGACTAAAGATAGCAGATCTTGTCTTCCTGT
1 CACCAACCTTGCCTCCCTGAGTTTGCAGCGGAGCAGACTAAAGATAACAGATCTTGTCTTCCTGT
* *
18020964 ATTAGCAA-CGAAGTAGATCAAAGA
66 ATT-GGAAGCGAAGCAGATCAAAGA
** * * * * * ** **
18020988 CACCAGTCTTGTCTCTCTGAGTTAGCAGCGGAGTAGACTAAAAATAGTAGATCTTGTCTTATTGT
1 CACCAACCTTGCCTCCCTGAGTTTGCAGCGGAGCAGACTAAAGATAACAGATCTTGTCTTCCTGT
* * *
18021053 ACTGGAAGTGAAGCAGAT-AAAAA
66 ATTGGAAGCGAAGCAGATCAAAGA
* ** *
18021076 CCACCAGCCTTGCCTCTTTGAGTTTGCAGTGGAG
1 -CACCAACCTTGCCTCCCTGAGTTTGCAGCGGAG
18021110 TAGGTTGAAG
Statistics
Matches: 413, Mismatches: 62, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
88 7 0.02
89 404 0.98
90 2 0.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (89 bp):
CACCAACCTTGCCTCCCTGAGTTTGCAGCGGAGCAGACTAAAGATAACAGATCTTGTCTTCCTGT
ATTGGAAGCGAAGCAGATCAAAGA
Found at i:18021249 original size:131 final size:133
Alignment explanation
Indices: 18021105--18021382 Score: 413
Period size: 131 Copynumber: 2.1 Consensus size: 133
18021095 GAGTTTGCAG
* * *
18021105 TGGAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCG
1 TGGAGTAGGTTGAAGATTGTAGATCCTATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGACGAC-
*
18021170 AA-TCTTATCTTCCCG-AGATAGTA-GGAAGCAGATTTAAGCCACTAGTCC-TATCTCCCTG-AG
65 AAGTCTTATCTT-CCGAAGATAGTAGGGAAGCAGATTTAAGCCACCAG-CCTTATCTCCCTGAAG
18021230 TAGTAA
128 TAGTAA
*
18021236 TGGAGTAGGTTGAAGATTGTATATCCTATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGACGACA
1 TGGAGTAGGTTGAAGATTGTAGATCCTATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGACGACA
* *
18021301 AGTCTTATCTTCCGAAGGTAGTAGGGAAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAAGTTG
66 AGTCTTATCTTCCGAAGATAGTAGGGAAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAAGTAG
*
18021366 TAG
131 TAA
*
18021369 TGGAGCAGGTTGAA
1 TGGAGTAGGTTGAA
18021383 ATTACCAATT
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
130 5 0.04
131 78 0.59
132 31 0.23
133 19 0.14
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (133 bp):
TGGAGTAGGTTGAAGATTGTAGATCCTATCTCCCTAAGCAGTAGTGGAGCAAATCAAAGACGACA
AGTCTTATCTTCCGAAGATAGTAGGGAAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAAGTAG
TAA
Found at i:18021834 original size:22 final size:23
Alignment explanation
Indices: 18021806--18021850 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
18021796 ATGCAATCTT
18021806 AGATATGA-TATGCAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
* *
18021828 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGCAATCTTAGA
18021851 GATTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.38
Consensus pattern (23 bp):
AGATATGATTATGCAATCTTAGA
Found at i:18024677 original size:17 final size:17
Alignment explanation
Indices: 18024630--18024677 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
18024620 ATAAAACAAG
*
18024630 TTAATCAAATTAATTATAA
1 TTAATCAAA--AATTAAAA
*
18024649 TTAATCATAAATTAAAA
1 TTAATCAAAAATTAAAA
*
18024666 TTAATTAAAAAT
1 TTAATCAAAAAT
18024678 ATAATAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
17 17 0.68
19 8 0.32
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (17 bp):
TTAATCAAAAATTAAAA
Found at i:18024693 original size:27 final size:27
Alignment explanation
Indices: 18024636--18024705 Score: 70
Period size: 27 Copynumber: 2.5 Consensus size: 27
18024626 CAAGTTAATC
* * *
18024636 AAATTAATTATAATTAATCATAAATTA
1 AAATTAATTAAAAATAATAATAAATTA
18024663 AAATTAATTAAAAAT-ATAATAAATATGA
1 AAATTAATTAAAAATAATAATAAAT-T-A
*
18024691 AATATTAAGTAAAAA
1 AA-ATTAATTAAAAA
18024706 AACTTCCAAC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 8 0.22
27 14 0.39
28 3 0.08
29 11 0.31
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.34
Consensus pattern (27 bp):
AAATTAATTAAAAATAATAATAAATTA
Found at i:18025015 original size:44 final size:44
Alignment explanation
Indices: 18024951--18025048 Score: 142
Period size: 44 Copynumber: 2.2 Consensus size: 44
18024941 ATAAATATAG
* * *
18024951 AATATTAGAAGAGGTAAGTTTTAATCCTTTTGCGATAGTCAGATA
1 AATA-TAGAAGACGTAAGTTTTAATCCTTTAGCGAAAGTCAGATA
*
18024996 AATATAGAAGACGTAAGTTTTATTCCTTTAGCGAAAGTCAGATA
1 AATATAGAAGACGTAAGTTTTAATCCTTTAGCGAAAGTCAGATA
*
18025040 GATATAGAA
1 AATATAGAA
18025049 TATTAGAAGA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
44 44 0.92
45 4 0.08
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (44 bp):
AATATAGAAGACGTAAGTTTTAATCCTTTAGCGAAAGTCAGATA
Found at i:18034217 original size:56 final size:50
Alignment explanation
Indices: 18034070--18034246 Score: 183
Period size: 50 Copynumber: 3.4 Consensus size: 50
18034060 TATCCTAGAT
* ** * * *
18034070 ATGGTCTTAGATGGGAGTTCTCATATTGGTGCCCATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATCTTGATGCCAATGCCATGTCCCAGAC
** * *
18034120 ATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAACGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATCTTGATGCCAATGCCATGTCCCAGAC
* *
18034170 TTGGTCTTACATGGGACCTCTCATAATCTCAATGATGCTAATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTC---ATCT---TGATGCCAATGCCATGTCCCAGAC
*
18034226 ATGGTCTTACATGGGATCTCT
1 ATGGTCTTACATGGGACCTCT
18034247 TGACCCAAAT
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
50 61 0.58
53 4 0.04
56 40 0.38
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.29
Consensus pattern (50 bp):
ATGGTCTTACATGGGACCTCTCATCTTGATGCCAATGCCATGTCCCAGAC
Found at i:18038000 original size:25 final size:25
Alignment explanation
Indices: 18037956--18038019 Score: 65
Period size: 25 Copynumber: 2.6 Consensus size: 25
18037946 TGTAAGAATC
* ** *
18037956 AAATAAAAGAAAAATTAAAATGTAA
1 AAATAAAATAAAAACAAAAATATAA
* * *
18037981 CAATTAAATTAAAACAAAAATATAA
1 AAATAAAATAAAAACAAAAATATAA
18038006 AAATAAAATAAAAA
1 AAATAAAATAAAAA
18038020 TAACTAAATT
Statistics
Matches: 29, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.20
Consensus pattern (25 bp):
AAATAAAATAAAAACAAAAATATAA
Found at i:18040014 original size:50 final size:50
Alignment explanation
Indices: 18039887--18040126 Score: 245
Period size: 49 Copynumber: 4.8 Consensus size: 50
18039877 GAATATAACA
* * * ** *
18039887 TGCCAAAGCTATGTCCCAGACATAGTCTTACATGGGATGTTTCCAGTAT---
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT-CA-TATCGG
* * * **
18039936 TGCCAAAGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * * ** *
18039986 TGCCCATGCCATGTCCAAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
18040036 TGCCAACG-CATGTCCCAGACATGATCTTACATGGGACCTCTCATCTCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
*
18040085 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
18040127 TTACCCAAAT
Statistics
Matches: 161, Mismatches: 26, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
47 3 0.02
48 2 0.01
49 79 0.49
50 77 0.48
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:18040072 original size:49 final size:50
Alignment explanation
Indices: 18039936--18040126 Score: 249
Period size: 50 Copynumber: 3.8 Consensus size: 50
18039926 TTTCCAGTAT
* * * ** *
18039936 TGCCAAAGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * **
18039986 TGCCCATGCCATGTCCAAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
18040036 TGCCAACG-CATGTCCCAGACATGATCTTACATGGGACCTCTCATCTCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
18040085 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
18040127 TTACCCAAAT
Statistics
Matches: 121, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
49 44 0.36
50 77 0.64
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:18044104 original size:9 final size:9
Alignment explanation
Indices: 18044090--18044117 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
18044080 TGTAACTGAG
18044090 CTTTCAATT
1 CTTTCAATT
18044099 CTTTCAATT
1 CTTTCAATT
18044108 CTTTCAATT
1 CTTTCAATT
18044117 C
1 C
18044118 CATCGGAGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.25, G:0.00, T:0.54
Consensus pattern (9 bp):
CTTTCAATT
Found at i:18046900 original size:150 final size:149
Alignment explanation
Indices: 18046628--18046907 Score: 339
Period size: 150 Copynumber: 1.9 Consensus size: 149
18046618 GAATATAACA
* ** * * * * *
18046628 TGCCAAAGCTATGTCCCAGACATAGTCTTACATGGGATGTTTCCAGTATTGCCAATGTCATATCC
1 TGCCAAAGCCATGTCCCAGACATAGTCTTACATGGGACCTCTCCACTAGTGCCAACGCCATATCC
* * * ** * * *
18046693 TAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTCCAAGACATGGTCTTAC
66 CAGACATGGTCTTACATAGGACCTCTCATATCGGTACCAACGCCATGTCCAAGACATGGTCTTAC
18046758 GGGAGACCTCTCATCTCGG
131 GGGAGACCTCTCATCTCGG
* * *
18046777 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT-CATCTCAGTGCCAACGCCATGT
1 TGCCAAAGCCATGTCCCAGACATAGTCTTACATGGGACCTCTCCA-CT-AGTGCCAACGCCATAT
*
18046841 CCCAGACATGGTCTTACATAGGACCTCTCATCTCGGTACCAACGCCATGTCCCAA-ACATGGTCT
64 CCCAGACATGGTCTTACATAGGACCTCTCATATCGGTACCAACGCCATGT-CCAAGACATGGTCT
18046905 TAC
128 TAC
18046908 ATGGGATCTC
Statistics
Matches: 108, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
148 2 0.02
149 37 0.34
150 65 0.60
151 4 0.04
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (149 bp):
TGCCAAAGCCATGTCCCAGACATAGTCTTACATGGGACCTCTCCACTAGTGCCAACGCCATATCC
CAGACATGGTCTTACATAGGACCTCTCATATCGGTACCAACGCCATGTCCAAGACATGGTCTTAC
GGGAGACCTCTCATCTCGG
Found at i:18046908 original size:50 final size:50
Alignment explanation
Indices: 18046698--18046918 Score: 302
Period size: 50 Copynumber: 4.4 Consensus size: 50
18046688 TATCCTAGAT
** * * *
18046698 ATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGT-CCAAGAC
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAA-AC
* *
18046748 ATGGTCTTAC-GGGAGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
1 ATGGTCTTACATGG-GACCTCTCATCTCGGTGCCAACGCCATGTCCCAAAC
* *
18046798 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAAC
* *
18046848 ATGGTCTTACATAGGACCTCTCATCTCGGTACCAACGCCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAAC
*
18046898 ATGGTCTTACATGGGATCTCT
1 ATGGTCTTACATGGGACCTCT
18046919 TTACCCAAAT
Statistics
Matches: 153, Mismatches: 15, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
49 2 0.01
50 146 0.95
51 5 0.03
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (50 bp):
ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAAC
Found at i:18055987 original size:30 final size:29
Alignment explanation
Indices: 18055931--18055987 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 29
18055921 GTGTAATTGT
* *
18055931 ATACATGAATTTTGATTTTGTGCAATTTC
1 ATACATGAAATTTGATTTTGTCCAATTTC
18055960 ATACATGAAAATTTGA-TTTGATCCAATT
1 ATACATG-AAATTTGATTTTG-TCCAATT
18055988 CTTGTAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 11 0.46
30 13 0.54
ACGTcount: A:0.33, C:0.11, G:0.12, T:0.44
Consensus pattern (29 bp):
ATACATGAAATTTGATTTTGTCCAATTTC
Found at i:18056839 original size:126 final size:125
Alignment explanation
Indices: 18056658--18056961 Score: 405
Period size: 126 Copynumber: 2.4 Consensus size: 125
18056648 TTTTATTCAT
* * * * * *
18056658 TCAGCCAAAGTATTGAAAAAAACTTCCAGCTAGACGCTCTTTTTCTAGAGTAGTTTCTGAAAAAA
1 TCAGCAAAAGTACTGAAAAAAGCTCCCA-CTTGACGCTCTTTTTCTACAGTAGTTTCTGAAAAAA
* * * *
18056723 TAATTTTGAGAAGA-AGATTCTGAAAAAATAGGGTCA-AAAACGCTTCAAGCAGGATGCACTG
65 TAATTTTGAGAAGATAG-CTCTAAAAAAATAGGGT-AGAAAAAGCTTCAAACAGGATGCACTG
* * * **
18056784 TCAGCAAAAGTACTGAAAAAAGCTCCCACCTTGATGCTCTCTTTCCACAGTAGTTTCTTTAAAAA
1 TCAGCAAAAGTACTGAAAAAAGCTCCCA-CTTGACGCTCTTTTTCTACAGTAGTTTCTGAAAAAA
*
18056849 TAATTTTGAGAAGATTGCTCTAAAAAAATAGGGTAGAAAAAGCTTCAAACAGGATGCACTG
65 TAATTTTGAGAAGATAGCTCTAAAAAAATAGGGTAGAAAAAGCTTCAAACAGGATGCACTG
18056910 TCAGCAAAAGTACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTACAGTA
1 TCAGCAAAAGTACTGAAAAAAGCTCCCACTT-GACGCTCTTTTTCTACAGTA
18056962 CATCCTGCTT
Statistics
Matches: 155, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
125 4 0.03
126 150 0.97
127 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (125 bp):
TCAGCAAAAGTACTGAAAAAAGCTCCCACTTGACGCTCTTTTTCTACAGTAGTTTCTGAAAAAAT
AATTTTGAGAAGATAGCTCTAAAAAAATAGGGTAGAAAAAGCTTCAAACAGGATGCACTG
Found at i:18057058 original size:25 final size:25
Alignment explanation
Indices: 18057029--18057094 Score: 98
Period size: 25 Copynumber: 2.6 Consensus size: 25
18057019 TTACAGCAAG
*
18057029 AGAAATT-AGAGAAGTTTAGAAGAAT
1 AGAAATTGA-AGAAGTTCAGAAGAAT
18057054 AGAAATTGAAGAAGTTCAGAAGAAT
1 AGAAATTGAAGAAGTTCAGAAGAAT
*
18057079 ATAAATTGAAGAAGTT
1 AGAAATTGAAGAAGTT
18057095 GAAAAGGTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
25 37 0.97
26 1 0.03
ACGTcount: A:0.52, C:0.02, G:0.23, T:0.24
Consensus pattern (25 bp):
AGAAATTGAAGAAGTTCAGAAGAAT
Found at i:18070028 original size:29 final size:29
Alignment explanation
Indices: 18069966--18070029 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
18069956 CTATTACCTT
*
18069966 TTTATTTATATATTTTTACTATTATTATTA
1 TTTATTTATATA-TTTTAATATTATTATTA
*
18069996 -TTATTTATCTA-TTTAATATTATTATTCA
1 TTTATTTATATATTTTAATATTATTATT-A
18070024 TTTATT
1 TTTATT
18070030 AATGCATGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
27 14 0.47
28 1 0.03
29 15 0.50
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.66
Consensus pattern (29 bp):
TTTATTTATATATTTTAATATTATTATTA
Found at i:18075052 original size:15 final size:15
Alignment explanation
Indices: 18075010--18075086 Score: 66
Period size: 15 Copynumber: 4.9 Consensus size: 15
18075000 AAGAATGTTC
*
18075010 AAAAAAA-AAAAACA
1 AAAAAAAGAAAAAGA
*
18075024 AACAAACAAAAAAAAGA
1 AA-AAA-AAGAAAAAGA
* *
18075041 AGAAAAGGAAAAAGA
1 AAAAAAAGAAAAAGA
*
18075056 AAAAAAAGAAAAATAA
1 AAAAAAAGAAAAA-GA
18075072 AAGAAAAAGAAAAAG
1 AA-AAAAAGAAAAAG
18075087 GAGAGGCCAA
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
14 2 0.04
15 22 0.44
16 8 0.16
17 18 0.36
ACGTcount: A:0.83, C:0.04, G:0.12, T:0.01
Consensus pattern (15 bp):
AAAAAAAGAAAAAGA
Found at i:18075058 original size:21 final size:20
Alignment explanation
Indices: 18075034--18075082 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 20
18075024 AACAAACAAA
18075034 AAAAAGAAGAAAAGGA-AAAAG
1 AAAAAGAAGAAAA--ATAAAAG
*
18075055 AAAAAAAAGAAAAATAAAAG
1 AAAAAGAAGAAAAATAAAAG
18075075 AAAAAGAA
1 AAAAAGAA
18075083 AAAGGAGAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 1 0.04
20 12 0.48
21 12 0.48
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (20 bp):
AAAAAGAAGAAAAATAAAAG
Found at i:18075060 original size:26 final size:26
Alignment explanation
Indices: 18075031--18075085 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
18075021 ACAAACAAAC
*
18075031 AAAAAA-AAGAAGAAAAGGAAAAAGAA
1 AAAAAAGAAAAAGAAAA-GAAAAAGAA
*
18075057 AAAAAAGAAAAATAAAAGAAAAAGAA
1 AAAAAAGAAAAAGAAAAGAAAAAGAA
18075083 AAA
1 AAA
18075086 GGAGAGGCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 18 0.69
27 8 0.31
ACGTcount: A:0.84, C:0.00, G:0.15, T:0.02
Consensus pattern (26 bp):
AAAAAAGAAAAAGAAAAGAAAAAGAA
Found at i:18075075 original size:11 final size:10
Alignment explanation
Indices: 18075013--18075084 Score: 58
Period size: 11 Copynumber: 6.9 Consensus size: 10
18075003 AATGTTCAAA
*
18075013 AAAAAAAAAC
1 AAAAAAAAAG
*
18075023 AAACAAACAA-
1 AAA-AAAAAAG
*
18075033 AAAAAAGAAG
1 AAAAAAAAAG
18075043 AAAAGGAAAAAG
1 AAAA--AAAAAG
18075055 -AAAAAAAAG
1 AAAAAAAAAG
18075064 AAAAATAAAAG
1 AAAAA-AAAAG
18075075 AAAAAGAAAA
1 AAAAA-AAAA
18075085 AGGAGAGGCC
Statistics
Matches: 52, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
9 11 0.21
10 14 0.27
11 22 0.42
12 5 0.10
ACGTcount: A:0.83, C:0.04, G:0.11, T:0.01
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:18075086 original size:6 final size:6
Alignment explanation
Indices: 18075031--18075086 Score: 51
Period size: 6 Copynumber: 9.0 Consensus size: 6
18075021 ACAAACAAAC
* * *
18075031 AAAAA- AAAGAAG AAAAGG AAAAAG AAAAAA AAGAAAA ATAAAAG AAAAAG
1 AAAAAG AAA-AAG AAAAAG AAAAAG AAAAAG AA-AAAG A-AAAAG AAAAAG
18075081 AAAAAG
1 AAAAAG
18075087 GAGAGGCCAA
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
5 3 0.07
6 27 0.63
7 12 0.28
8 1 0.02
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (6 bp):
AAAAAG
Found at i:18075521 original size:97 final size:93
Alignment explanation
Indices: 18075369--18075555 Score: 302
Period size: 97 Copynumber: 2.0 Consensus size: 93
18075359 TTCATTTTTG
*
18075369 TATCTTAGCAAAATTTGTTATCTTGATTTATTCATTTCGAGCTGTGCTCTCAATAAAATTTCATC
1 TATCTTAGCAAAATTTGCTATCTTGATTTATTCATTTCGAGCTGTGCTCTCAATAAAATTTCATC
18075434 TTATCCATTGTGATAATCTTTTTCATCT
66 TTATCCATTGTGATAATCTTTTTCATCT
* *
18075462 TATCTTAGCAAAATTTGCTATCTTGATTAATTTATTCATTTCGAGCTTTGTTCTCAATAAAATTT
1 TATCTTAGCAAAATTTGCTATCTTG----ATTTATTCATTTCGAGCTGTGCTCTCAATAAAATTT
*
18075527 CATCTTGTCCATTGTGATAATCTTTTTCA
62 CATCTTATCCATTGTGATAATCTTTTTCA
18075556 AGCATTTTTC
Statistics
Matches: 86, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
93 24 0.28
97 62 0.72
ACGTcount: A:0.26, C:0.17, G:0.10, T:0.48
Consensus pattern (93 bp):
TATCTTAGCAAAATTTGCTATCTTGATTTATTCATTTCGAGCTGTGCTCTCAATAAAATTTCATC
TTATCCATTGTGATAATCTTTTTCATCT
Found at i:18076667 original size:131 final size:131
Alignment explanation
Indices: 18076433--18077138 Score: 1013
Period size: 131 Copynumber: 5.4 Consensus size: 131
18076423 CATCATATCA
* * * *
18076433 AGCCTTATCTCCCTAAGTAACAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATCTTATCTCCCTAAGCAGT
* * *
18076498 AGTAGAGCAGATCGAAGATGGCGAATCTTATCTTCCTAAGGTAGTAGGAAGCAAATTTAAGCCAC
66 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCTAAGGTAGTAGGAAGCAGATTTAAGCCAC
18076563 C
131 C
* *
18076564 AGCCTTATCTCCCTGAGTAGCAGTGGAGTAGGTTGAAGATTGCAGATCTTATCTCCCTAAGAAGT
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATCTTATCTCCCTAAGCAGT
*
18076629 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCTAAGGTAGTAGGAAACAGATTTAAGCCAC
66 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCTAAGGTAGTAGGAAGCAGATTTAAGCCAC
18076694 C
131 C
* * *
18076695 AGCCTTATCTCCCTGAGCAGTAGTGGAGTAGATTGAAGATTGCAGATCTTATCTCTCTAAGCAGT
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATCTTATCTCCCTAAGCAGT
* *
18076760 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCCTAAGATAGTAGGAAGCAGATTTAAGCCAC
66 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCTAAGGTAGTAGGAAGCAGATTTAAGCCAC
18076825 C
131 C
* * * *
18076826 AGCCTTATCTCCTTGAGCATCAGTGGAGTAGGTTGAAGATTGCATATCTTATCTCTCTAAGCAGT
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATCTTATCTCCCTAAGCAGT
* * *
18076891 AGTGGAACAGATCGAAGACGGTGAATCTTATCTTCTTAAGGTAGTAGGAAGCAGATTTAAGCCA-
66 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCTAAGGTAGTAGGAAGCAGATTTAAGCCAC
18076955 C
131 C
* * * * * *
18076956 ATGTCC-TAAC-CCCTTGAGCAACAGTGGAGTAGGTTGAAGATTACAAATCCTGTCTCCCTAAGC
1 A-G-CCTTATCTCCC-TGAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATCTTATCTCCCTAAGC
* * * * *
18077019 AGTAGTGGAGCAGATCGAAGACAGCGGATCTTATCTTCCCAAGGTAGAAGGGAAGAAGATTTAAG
63 AGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCTAAGGTAGTA-GGAAGCAGATTTAAG
*
18077084 CCACT
127 CCACC
* * * *
18077089 AGCCTTACCTCCCTGAGTAGCAGTGGAGTAGGTCGAAGATTGTAGATCTT
1 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATCTT
18077139 GTTTTCCTGT
Statistics
Matches: 517, Mismatches: 51, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
130 4 0.01
131 456 0.88
132 53 0.10
133 4 0.01
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.26
Consensus pattern (131 bp):
AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATCTTATCTCCCTAAGCAGT
AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCTAAGGTAGTAGGAAGCAGATTTAAGCCAC
C
Found at i:18076833 original size:87 final size:87
Alignment explanation
Indices: 18076480--18076837 Score: 244
Period size: 87 Copynumber: 4.1 Consensus size: 87
18076470 GATTGTAGAT
* * * *
18076480 CTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGATGGCGAATCTTATCTTCCTAAGGTAGTAG
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCCTAAGATAGTAG
* *
18076545 GAAGCAAATTTAAGCCACCAGC
66 GAAGCAGATTGAAGCCACCAGC
* * * * * * **
18076567 CTTATCTCCCTGAGTAGCAGTGGAGTAGGTTGAAGATTGC-AGATCTTATCTCCCTAAGA-AGTA
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA-ATCTTATCTCCCTAAGATAGTA
* * ** * **
18076630 GTGGAGCAGATCGAAGACGGCGAAT
65 G-GAAGCAGATTGAAG-CCACCAGC
* * ** ** * ** *
18076655 CTTATCTTCCTAAG--GTAGTAGGAAACAGATTTAAG-CCACCAGCCTTATCTCCCTGAGCAGTA
1 CTTATCTCCCTAAGCAGTAGT-GG-AGCAGATCGAAGACGGCGAATCTTATCTCCCTAAG-A-TA
* **** *
18076717 GT-GG-AGTAGATTGAAGATTGCAGAT
62 GTAGGAAGCAGATTGAAGCCACCAG-C
*
18076742 CTTATCTCTCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCCTAAGATAGTAG
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCCTAAGATAGTAG
*
18076807 GAAGCAGATTTAAGCCACCAGC
66 GAAGCAGATTGAAGCCACCAGC
18076829 CTTATCTCC
1 CTTATCTCC
18076838 TTGAGCATCA
Statistics
Matches: 197, Mismatches: 59, Indels: 30
0.69 0.21 0.10
Matches are distributed among these distances:
86 15 0.08
87 116 0.59
88 57 0.29
89 6 0.03
90 3 0.02
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.25
Consensus pattern (87 bp):
CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCCTAAGATAGTAG
GAAGCAGATTGAAGCCACCAGC
Found at i:18076908 original size:44 final size:43
Alignment explanation
Indices: 18076436--18077054 Score: 274
Period size: 44 Copynumber: 14.2 Consensus size: 43
18076426 CATATCAAGC
* ** * * * *
18076436 CTTATCTCCCTAAGTAACAGTGGAGTAGGTTGAAGATTGTAGAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACTGCA-AT
* *
18076480 CTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGA-TGGCGAAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACT-GC-AAT
* * * * ** **
18076524 CTTATCTTCCTAAG--GTAGTAGGAAGCAAATTTAAGCCACCAGC
1 CTTATCTCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACTGCAAT
* * * * * *
18076567 CTTATCTCCCTGAGTAGCAGTGGAGTAGGTTGAAGATTGCAGAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACTGCA-AT
* * *
18076611 CTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGACGGCGAAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACTGC-AAT
* * * * ** **
18076655 CTTATCTTCCTAAG--GTAGTAGGAAACAGATTTAAGCCACCAGC
1 CTTATCTCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACTGCAAT
* * *
18076698 CTTATCTCCCTGAGCAGTAGTGGAGTAGATTGAAGATTGCAGAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACTGCA-AT
* * *
18076742 CTTATCTCTCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACTGC-AAT
* * ** **
18076786 CTTATCTCCCTAAG-A-TAGTAGGAAGCAGATTTAAGCCACCAGC
1 CTTATCTCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACTGCAAT
* * * * *
18076829 CTTATCTCCTTGAGCA-TCAGTGGAGTAGGTTGAAGATTGCATAT
1 CTTATCTCCCTAAGCAGT-AGTGGAGCAGATTGAAGACTGCA-AT
* * *
18076873 CTTATCTCTCTAAGCAGTAGTGGAACAGATCGAAGACGGTG-AAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGAC--TGCAAT
* * * ** *
18076917 CTTATCTTCTTAAG--GTAGTAGGAAGCAGATTTAAG-CCACATGT
1 CTTATCTCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACTGCA-AT
* * * ** * * * *
18076960 CCTAAC-CCCTTGAGCAACAGTGGAGTAGGTTGAAGATTACAAAT
1 CTTATCTCCC-TAAGCAGTAGTGGAGCAGATTGAAGACTGC-AAT
* * * * *
18077004 CCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCGGAT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACTGC-AAT
18077048 CTTATCT
1 CTTATCT
18077055 TCCCAAGGTA
Statistics
Matches: 413, Mismatches: 129, Indels: 66
0.68 0.21 0.11
Matches are distributed among these distances:
42 21 0.05
43 98 0.24
44 268 0.65
45 24 0.06
46 2 0.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (43 bp):
CTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACTGCAAT
Found at i:18077167 original size:88 final size:88
Alignment explanation
Indices: 18077070--18077258 Score: 272
Period size: 88 Copynumber: 2.2 Consensus size: 88
18077060 AGGTAGAAGG
* ** *
18077070 GAAGAAGATTTAAGCCACTAGCCTTACCTCCCTGAGTAGCAGTGGAGTAGGTCGAAGATTGTAGA
1 GAAGAAGATTAAAAACACTAGCCTTACCTCCCTGAGTAGCAGTGGAGTAGGGCGAAGATTGTAGA
*
18077135 TCTTGTTTTCCTGTACTAGCAGT
66 TCTTGTCTTCCTGTACTAGCAGT
* * * *
18077158 GAAGTAGATTAAAAACACTTGCCTTATCTCCCTGAGTAGTAGTGGAGTAGGGCGAAGATTGTAGA
1 GAAGAAGATTAAAAACACTAGCCTTACCTCCCTGAGTAGCAGTGGAGTAGGGCGAAGATTGTAGA
*
18077223 TCTTGTCTTCCTGTACTGGCAGT
66 TCTTGTCTTCCTGTACTAGCAGT
*
18077246 GAAGCAGA-TAAAA
1 GAAGAAGATTAAAA
18077259 TAAAAAATAA
Statistics
Matches: 90, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
87 5 0.06
88 85 0.94
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (88 bp):
GAAGAAGATTAAAAACACTAGCCTTACCTCCCTGAGTAGCAGTGGAGTAGGGCGAAGATTGTAGA
TCTTGTCTTCCTGTACTAGCAGT
Found at i:18079015 original size:18 final size:18
Alignment explanation
Indices: 18078989--18079068 Score: 51
Period size: 18 Copynumber: 4.7 Consensus size: 18
18078979 TTTAATAATG
*
18078989 TTATCATTATTTTTACTA
1 TTATTATTATTTTTACTA
* *
18079007 TTATTATTATGTTTAATA
1 TTATTATTATTTTTACTA
* * * * *
18079025 CTGTTATTACTATTAC-C
1 TTATTATTATTTTTACTA
*
18079042 TT-TT-TTATTTATA-TA
1 TTATTATTATTTTTACTA
18079057 TTATTATTATTT
1 TTATTATTATTT
18079069 ATCTATTTAA
Statistics
Matches: 44, Mismatches: 15, Indels: 7
0.67 0.23 0.11
Matches are distributed among these distances:
15 8 0.18
16 4 0.09
17 7 0.16
18 25 0.57
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.62
Consensus pattern (18 bp):
TTATTATTATTTTTACTA
Found at i:18079068 original size:17 final size:18
Alignment explanation
Indices: 18079046--18079085 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
18079036 ATTACCTTTT
*
18079046 TTATTTATATA-TTATTA
1 TTATTTATATATTTAATA
*
18079063 TTATTTATCTATTTAATA
1 TTATTTATATATTTAATA
18079081 TTATT
1 TTATT
18079086 GTTCATTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (18 bp):
TTATTTATATATTTAATA
Found at i:18079070 original size:21 final size:21
Alignment explanation
Indices: 18079045--18079114 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
18079035 TATTACCTTT
*
18079045 TTTATTTATATATTATTATTA
1 TTTATTTATATAATATTATTA
* * *
18079066 TTTATCTATTTAATATTATTG
1 TTTATTTATATAATATTATTA
* *
18079087 TTCATTTAT-TAATGCATGATTA
1 TTTATTTATATAAT--ATTATTA
18079109 TTTATT
1 TTTATT
18079115 GTATTTCTTA
Statistics
Matches: 38, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
20 4 0.11
21 24 0.63
22 10 0.26
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.61
Consensus pattern (21 bp):
TTTATTTATATAATATTATTA
Found at i:18093362 original size:11 final size:11
Alignment explanation
Indices: 18093280--18093391 Score: 62
Period size: 11 Copynumber: 9.8 Consensus size: 11
18093270 ACAAATACCT
*
18093280 ATAAAATAGTA
1 ATAAAATAATA
*
18093291 GTAAAATTAATA
1 ATAAAA-TAATA
*
18093303 ATAAAATAAAA
1 ATAAAATAATA
* *
18093314 ATTATATAATA
1 ATAAAATAATA
* *
18093325 TCTAAACAATAAAA
1 -AT-AA-AATAATA
* *
18093339 ACAAAACAATA
1 ATAAAATAATA
*
18093350 ATAATATAATA
1 ATAAAATAATA
*
18093361 ATAAAATAACA
1 ATAAAATAATA
* *
18093372 ACAAAACAATA
1 ATAAAATAATA
*
18093383 TTAAAATAA
1 ATAAAATAA
18093392 CAGCAAAACA
Statistics
Matches: 71, Mismatches: 26, Indels: 8
0.68 0.25 0.08
Matches are distributed among these distances:
11 53 0.75
12 12 0.17
13 1 0.01
14 5 0.07
ACGTcount: A:0.67, C:0.06, G:0.02, T:0.25
Consensus pattern (11 bp):
ATAAAATAATA
Found at i:18093382 original size:22 final size:22
Alignment explanation
Indices: 18093357--18093403 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
18093347 ATAATAATAT
18093357 AATAATAAAATAACAACAAAAC
1 AATAATAAAATAACAACAAAAC
* *
18093379 AATATTAAAATAACAGCAAAAC
1 AATAATAAAATAACAACAAAAC
18093401 AAT
1 AAT
18093404 GAAATTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.68, C:0.13, G:0.02, T:0.17
Consensus pattern (22 bp):
AATAATAAAATAACAACAAAAC
Found at i:18093784 original size:18 final size:18
Alignment explanation
Indices: 18093753--18093787 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
18093743 AAATTCTCAA
*
18093753 TTAAAAATAGTTTATTTT
1 TTAAAAATAATTTATTTT
*
18093771 TTAAACATAATTTATTT
1 TTAAAAATAATTTATTT
18093788 GTTTGAAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.54
Consensus pattern (18 bp):
TTAAAAATAATTTATTTT
Found at i:18096511 original size:12 final size:12
Alignment explanation
Indices: 18096494--18096519 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
18096484 CATTCCGAAG
18096494 TATATATATACA
1 TATATATATACA
18096506 TATATATATACA
1 TATATATATACA
18096518 TA
1 TA
18096520 AGTATGCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:18097030 original size:27 final size:27
Alignment explanation
Indices: 18096999--18097176 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
18096989 TAAATTGTAC
18096999 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * ** *
18097026 TGCACTAAGTGTGTGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
18097052 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
18097080 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
18097108 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
18097135 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
18097162 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
18097177 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:18097113 original size:82 final size:81
Alignment explanation
Indices: 18097000--18097155 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
18096990 AAATTGTACA
* * *
18097000 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGTGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
18097064 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
18097081 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
18097146 TGCGAGTTGA
65 TGCGAATTGA
18097156 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:18097167 original size:82 final size:81
Alignment explanation
Indices: 18096996--18097176 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
18096986 GATTAAATTG
* * *
18096996 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGTGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
18097061 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
18097077 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
18097141 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
18097159 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
18097177 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:18105865 original size:74 final size:74
Alignment explanation
Indices: 18105744--18105898 Score: 310
Period size: 74 Copynumber: 2.1 Consensus size: 74
18105734 GCTAGCAAAA
18105744 TCGGCCAAGTGTTTATGTGGTGGAAATTAAGTGTTAAATGGAATGAAAATGATATTATATGGGGG
1 TCGGCCAAGTGTTTATGTGGTGGAAATTAAGTGTTAAATGGAATGAAAATGATATTATATGGGGG
18105809 TATGTATAT
66 TATGTATAT
18105818 TCGGCCAAGTGTTTATGTGGTGGAAATTAAGTGTTAAATGGAATGAAAATGATATTATATGGGGG
1 TCGGCCAAGTGTTTATGTGGTGGAAATTAAGTGTTAAATGGAATGAAAATGATATTATATGGGGG
18105883 TATGTATAT
66 TATGTATAT
18105892 TCGGCCA
1 TCGGCCA
18105899 TATGAGTAAA
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 81 1.00
ACGTcount: A:0.32, C:0.06, G:0.28, T:0.34
Consensus pattern (74 bp):
TCGGCCAAGTGTTTATGTGGTGGAAATTAAGTGTTAAATGGAATGAAAATGATATTATATGGGGG
TATGTATAT
Found at i:18106105 original size:12 final size:12
Alignment explanation
Indices: 18106088--18106113 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
18106078 CATTCCGAAG
18106088 TATATATATACA
1 TATATATATACA
18106100 TATATATATACA
1 TATATATATACA
18106112 TA
1 TA
18106114 AGTATGCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:18106624 original size:27 final size:27
Alignment explanation
Indices: 18106593--18106770 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
18106583 TAAATTGTAC
18106593 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
18106620 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
18106646 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
18106674 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
18106702 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
18106729 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
18106756 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
18106771 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:18106707 original size:82 final size:81
Alignment explanation
Indices: 18106594--18106749 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
18106584 AAATTGTACA
* *
18106594 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
18106658 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
18106675 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
18106740 TGCGAGTTGA
65 TGCGAATTGA
18106750 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:18106761 original size:82 final size:81
Alignment explanation
Indices: 18106590--18106770 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
18106580 GATTAAATTG
* *
18106590 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
18106655 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
18106671 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
18106735 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
18106753 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
18106771 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:18108826 original size:17 final size:17
Alignment explanation
Indices: 18108804--18108836 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
18108794 ATATCGATTT
18108804 TGACATCACTATGTCAA
1 TGACATCACTATGTCAA
*
18108821 TGACATCACTTTGTCA
1 TGACATCACTATGTCA
18108837 TGAATCAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.33
Consensus pattern (17 bp):
TGACATCACTATGTCAA
Done.