Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 74 of 221
Found at i:21513448 original size:43 final size:43
Alignment explanation
Indices: 21513401--21513503 Score: 161
Period size: 43 Copynumber: 2.4 Consensus size: 43
21513391 TTCCGATATG
*
21513401 TGTTTTCATGTAAGACCACGTATGGGACATTGACATCGATTTA
1 TGTTTTCATGTAAGACCACGTATAGGACATTGACATCGATTTA
* * * *
21513444 TGTTTTCGTGTAAGACCACGTCTAGGACGTTGGCATCGATTTA
1 TGTTTTCATGTAAGACCACGTATAGGACATTGACATCGATTTA
21513487 TGTTTTCATGTAAGACC
1 TGTTTTCATGTAAGACC
21513504 TTGTCTGGGA
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.36
Consensus pattern (43 bp):
TGTTTTCATGTAAGACCACGTATAGGACATTGACATCGATTTA
Found at i:21513513 original size:86 final size:86
Alignment explanation
Indices: 21513401--21513565 Score: 206
Period size: 86 Copynumber: 1.9 Consensus size: 86
21513391 TTCCGATATG
* * * * *
21513401 TGTTTTCATGTAAGACCACGTATGGGACA-TTGACATCGATTTATGTTTTCGTGTAAGACCACGT
1 TGTTTTCATGTAAGACCACGTATGGGACAGTAG-CATCGATCTATGATTACATGTAAGACCACGT
21513465 CTAGGACGTTGGCATCGATTTA
65 CTAGGACGTTGGCATCGATTTA
** * ** *
21513487 TGTTTTCATGTAAGACCTTGTCTGGGACAGTAGTGTCGATCTGTGATTACATGTAAGACCACGTC
1 TGTTTTCATGTAAGACCACGTATGGGACAGTAGCATCGATCTATGATTACATGTAAGACCACGTC
*
21513552 TGGGACGTTGGCAT
66 TAGGACGTTGGCAT
21513566 TGTATGAGCT
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
86 64 0.97
87 2 0.03
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (86 bp):
TGTTTTCATGTAAGACCACGTATGGGACAGTAGCATCGATCTATGATTACATGTAAGACCACGTC
TAGGACGTTGGCATCGATTTA
Found at i:21513526 original size:43 final size:42
Alignment explanation
Indices: 21513401--21513562 Score: 159
Period size: 43 Copynumber: 3.8 Consensus size: 42
21513391 TTCCGATATG
* *
21513401 TGTTTTCATGTAAGACCACGTATGGGACA-TTGACATCGATTTA
1 TGTTTTCATGTAAGACCACGTCTGGGACAGTTG--GTCGATTTA
* *
21513444 TGTTTTCGTGTAAGACCACGTCTAGGAC-GTTGGCATCGATTTA
1 TGTTTTCATGTAAGACCACGTCTGGGACAGTTGG--TCGATTTA
** * * *
21513487 TGTTTTCATGTAAGACCTTGTCTGGGACAGTAGTGTCGATCTG
1 TGTTTTCATGTAAGACCACGTCTGGGACAGTTG-GTCGATTTA
* *
21513530 TGATTACATGTAAGACCACGTCTGGGAC-GTTGG
1 TGTTTTCATGTAAGACCACGTCTGGGACAGTTGG
21513563 CATTGTATGA
Statistics
Matches: 98, Mismatches: 16, Indels: 12
0.78 0.13 0.10
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
43 90 0.92
44 3 0.03
45 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (42 bp):
TGTTTTCATGTAAGACCACGTCTGGGACAGTTGGTCGATTTA
Found at i:21525410 original size:20 final size:20
Alignment explanation
Indices: 21525385--21525424 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
21525375 TCTAATCATA
*
21525385 TAATAAATTATTTATTGTTT
1 TAATAAATTATTTAATGTTT
21525405 TAATAAATTATTTAATGTTT
1 TAATAAATTATTTAATGTTT
21525425 CAATTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (20 bp):
TAATAAATTATTTAATGTTT
Found at i:21526393 original size:18 final size:19
Alignment explanation
Indices: 21526367--21526404 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
21526357 TATATAAAGT
*
21526367 TCAAATATA-AAATATTCA
1 TCAAATATATAAATACTCA
*
21526385 TCAATTATATAAATACTCA
1 TCAAATATATAAATACTCA
21526404 T
1 T
21526405 TAAAAATTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (19 bp):
TCAAATATATAAATACTCA
Found at i:21528000 original size:3 final size:3
Alignment explanation
Indices: 21527992--21528032 Score: 73
Period size: 3 Copynumber: 13.3 Consensus size: 3
21527982 TAGATAAATC
21527992 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA T
21528033 TTAGTTTTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 34 0.92
4 3 0.08
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:21529658 original size:14 final size:14
Alignment explanation
Indices: 21529636--21529670 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
21529626 ATGGTATGGG
21529636 TTTATGGGTTTTGGT
1 TTTA-GGGTTTTGGT
21529651 TTTAGGGTTTTGGT
1 TTTAGGGTTTTGGT
*
21529665 TGTAGG
1 TTTAGG
21529671 CAAATGATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 15 0.79
15 4 0.21
ACGTcount: A:0.09, C:0.00, G:0.37, T:0.54
Consensus pattern (14 bp):
TTTAGGGTTTTGGT
Found at i:21529826 original size:23 final size:23
Alignment explanation
Indices: 21529800--21529847 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
21529790 GAGGAAAGTT
21529800 TAAAGAACATAAAATAAAAAAAA
1 TAAAGAACATAAAATAAAAAAAA
** * *
21529823 TAAATTACTTAAAATGAAAAAAA
1 TAAAGAACATAAAATAAAAAAAA
21529846 TA
1 TA
21529848 TGGGGATCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.71, C:0.04, G:0.04, T:0.21
Consensus pattern (23 bp):
TAAAGAACATAAAATAAAAAAAA
Found at i:21530910 original size:31 final size:29
Alignment explanation
Indices: 21530847--21530914 Score: 84
Period size: 31 Copynumber: 2.3 Consensus size: 29
21530837 GCGATAACGT
* *
21530847 AAGTGACT-AAATGTAACATTTCAAACAT
1 AAGTGACTAAAATGTAACATGTCAAACAA
*
21530875 AAGTGACTAAAATGTAACCTGAGTCAAACAA
1 AAGTGACTAAAATGTAACAT--GTCAAACAA
21530906 AAGTGACTA
1 AAGTGACTA
21530915 TTTGGATAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 8 0.24
29 10 0.29
31 16 0.47
ACGTcount: A:0.47, C:0.15, G:0.15, T:0.24
Consensus pattern (29 bp):
AAGTGACTAAAATGTAACATGTCAAACAA
Found at i:21530975 original size:38 final size:38
Alignment explanation
Indices: 21530924--21531001 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
21530914 ATTTGGATAG
*
21530924 TTTACCCATAAAAATAATTTCTCATTAAGTAACAAAAA
1 TTTACCCAAAAAAATAATTTCTCATTAAGTAACAAAAA
*
21530962 TTTACCCAAAAAAATAATTTCTCATTAAGTAACAACAA
1 TTTACCCAAAAAAATAATTTCTCATTAAGTAACAAAAA
21531000 TT
1 TT
21531002 AAAACCAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.49, C:0.17, G:0.03, T:0.32
Consensus pattern (38 bp):
TTTACCCAAAAAAATAATTTCTCATTAAGTAACAAAAA
Found at i:21532710 original size:23 final size:26
Alignment explanation
Indices: 21532682--21532742 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 26
21532672 CACATCTCGT
21532682 ATGAGCTTACCG-T-TTCAGCTC-G-
1 ATGAGCTTACCGTTCTTCAGCTCGGA
*
21532704 ATAGAGCTTATCGTTCTTCAGCTCGGA
1 AT-GAGCTTACCGTTCTTCAGCTCGGA
21532731 ATGAGCTTACCG
1 ATGAGCTTACCG
21532743 ATCATGGCTC
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
22 2 0.06
23 9 0.28
24 1 0.03
25 8 0.25
26 10 0.31
27 2 0.06
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.31
Consensus pattern (26 bp):
ATGAGCTTACCGTTCTTCAGCTCGGA
Found at i:21534360 original size:16 final size:17
Alignment explanation
Indices: 21534335--21534371 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
21534325 AAATAAATAA
21534335 ATAATAATATAAATTTT
1 ATAATAATATAAATTTT
*
21534352 ATAAT-ATATAACTTTT
1 ATAATAATATAAATTTT
21534368 ATAA
1 ATAA
21534372 AAAAAAAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (17 bp):
ATAATAATATAAATTTT
Found at i:21536008 original size:20 final size:20
Alignment explanation
Indices: 21535965--21536008 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
21535955 TCCTGATTTT
*
21535965 ATTTGATTCCAATCAATTTA
1 ATTTGATTCCAATCAAATTA
** *
21535985 ATTTGATTTTAATCAAATTG
1 ATTTGATTCCAATCAAATTA
21536005 ATTT
1 ATTT
21536009 AATTGCTTCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.50
Consensus pattern (20 bp):
ATTTGATTCCAATCAAATTA
Found at i:21536456 original size:28 final size:29
Alignment explanation
Indices: 21536402--21536471 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 29
21536392 TCGTATATGA
*
21536402 TATTTTAAATATAAATTATTCAATTTATTT
1 TATTTTATATATAAATTATTCAATTTA-TT
**
21536432 TATTTTATATATAAA-TATT-TGTTTATT
1 TATTTTATATATAAATTATTCAATTTATT
21536459 TATATTTATATAT
1 TAT-TTTATATAT
21536472 TTTATCGCTA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 5 0.14
28 13 0.36
29 4 0.11
30 14 0.39
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.60
Consensus pattern (29 bp):
TATTTTATATATAAATTATTCAATTTATT
Found at i:21536463 original size:22 final size:23
Alignment explanation
Indices: 21536430--21536473 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
21536420 TTCAATTTAT
21536430 TTTATTTTATATATAAATATTTG
1 TTTATTTTATATATAAATATTTG
* *
21536453 TTTA-TTTATATTTATATATTT
1 TTTATTTTATATATAAATATTT
21536474 TATCGCTAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (23 bp):
TTTATTTTATATATAAATATTTG
Found at i:21536718 original size:86 final size:84
Alignment explanation
Indices: 21536600--21537217 Score: 410
Period size: 83 Copynumber: 7.5 Consensus size: 84
21536590 AATCAAAATA
* * * *
21536600 AAAATTGAATAAAATTTATTTTGGGATTTATTCCCGCCGTTCAACAGATTTTATTCCATTTTTTA
1 AAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAACAGATTTTATT-CA-TTTTTA
*
21536665 TTTTGTTTCCAAACGAGTATT
64 TTTTGTTTCCAAACGAGAATT
*
21536686 AAAATTAAATAAAATCGGTTTCGGGATTTATTCCCGCCGTTCAAC-------A-T-A-TTTTATT
1 AAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAACAGATTTTATTCATTTTTATT
* *
21536741 TTGTTTCCAAATGAGCATT
66 TTGTTTCCAAACGAGAATT
* * *
21536760 AAAATTAAATAAAATCTGTTTCGGGATTTATTCCCACCATTCAACATATTTTATTCTATTTTTGA
1 AAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAACAGATTTTATTC-ATTTTT-A
* *
21536825 TTTTGTTACCAAACCAGAAATT
64 TTTTGTTTCCAAACGAG-AATT
* * * ** * *
21536847 AAAATTAAATAAAATATGTTTTGAGATTTATTCCCGTTGTTTAACAGATTTTATTCGATTTTAAT
1 AAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAACAGATTTTATTC-ATTTTTAT
**
21536912 TTTGTTTCCAAATTAGAATT
65 TTTGTTTCCAAACGAGAATT
* * * ** * * * * *
21536932 -AAATTGAAT--AATCTTTTTCAGGATTTATTCCTACCATTTAACA-ATCTGTATTCGATCTTGA
1 AAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAACAGAT-TTTATTC-ATTTTTA
*
21536993 TTTTGTTTCCAAACGAAGACTT
64 TTTTGTTTCCAAACG-AGAATT
*** * * * * * *
21537015 --AATCGTAT-AAATCTGTTTCGAGATATATTCCCGCAGTTTAACAG-TCTTTATTCGATCTTGA
1 AAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAACAGAT-TTTATTC-ATTTTTA
*
21537076 TTTTGTTTCCAAACGAAGACTT
64 TTTTGTTTCCAAACG-AGAATT
* * * * * * *
21537098 --AATCAAAT-AATTTTGTTTCGGGATTAATTCCCACCGTTTAACAGA--TT-TT-ATTTTGATT
1 AAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAACAGATTTTATTCATTTTTATT
*
21537156 TTGTTTCCAAACAAG-ATT
66 TTGTTTCCAAACGAGAATT
* * * * * * *
21537174 -TAATTAAAT-AATTTTGTTTCAGGATTTAATCCTGCCGTTTAACA
1 AAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAACA
21537218 AATCCAAGGG
Statistics
Matches: 439, Mismatches: 74, Indels: 47
0.78 0.13 0.08
Matches are distributed among these distances:
74 66 0.15
76 3 0.01
77 39 0.09
78 21 0.05
79 1 0.00
80 2 0.00
81 5 0.01
82 56 0.13
83 104 0.24
84 9 0.02
85 8 0.02
86 70 0.16
87 55 0.13
ACGTcount: A:0.31, C:0.15, G:0.11, T:0.43
Consensus pattern (84 bp):
AAAATTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGTTCAACAGATTTTATTCATTTTTATT
TTGTTTCCAAACGAGAATT
Found at i:21536747 original size:74 final size:74
Alignment explanation
Indices: 21536660--21536814 Score: 265
Period size: 74 Copynumber: 2.1 Consensus size: 74
21536650 TTATTCCATT
* * *
21536660 TTTTATTTTGTTTCCAAACGAGTATTAAAATTAAATAAAATCGGTTTCGGGATTTATTCCCGCCG
1 TTTTATTTTGTTTCCAAACGAGCATTAAAATTAAATAAAATCGGTTTCGGGATTTATTCCCACCA
21536725 TTCAACATA
66 TTCAACATA
* *
21536734 TTTTATTTTGTTTCCAAATGAGCATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCCACCA
1 TTTTATTTTGTTTCCAAACGAGCATTAAAATTAAATAAAATCGGTTTCGGGATTTATTCCCACCA
21536799 TTCAACATA
66 TTCAACATA
21536808 TTTTATT
1 TTTTATT
21536815 CTATTTTTGA
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
74 76 1.00
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.42
Consensus pattern (74 bp):
TTTTATTTTGTTTCCAAACGAGCATTAAAATTAAATAAAATCGGTTTCGGGATTTATTCCCACCA
TTCAACATA
Found at i:21536790 original size:160 final size:161
Alignment explanation
Indices: 21536600--21536901 Score: 417
Period size: 160 Copynumber: 1.9 Consensus size: 161
21536590 AATCAAAATA
* * * * * *
21536600 AAAATTGAATAAAATTTATTTTGGGATTTATTCCCGCCGTTCAACAGATTTTATTCCATTTTTTA
1 AAAATTAAATAAAATCTATTTCGGGATTTATTCCCACCATTCAACAGATTTTATTCCATTTTTGA
* * * * *
21536665 TTTTGTTTCCAAACGAG-TATTAAAATTAAATAAAATCGGTTTCGGGATTTATTCCCGCCGTTCA
66 TTTTGTTACCAAACCAGAAATTAAAATTAAATAAAATAGGTTTCGAGATTTATTCCCGCCGTTCA
*
21536729 ACATATTTTATTTTGTTTCCAAATGAGCATT
131 ACAGATTTTATTTTGTTTCCAAATGAGCATT
* * *
21536760 AAAATTAAATAAAATCTGTTTCGGGATTTATTCCCACCATTCAACATATTTTATTCTATTTTTGA
1 AAAATTAAATAAAATCTATTTCGGGATTTATTCCCACCATTCAACAGATTTTATTCCATTTTTGA
* * ** *
21536825 TTTTGTTACCAAACCAGAAATTAAAATTAAATAAAATATGTTTTGAGATTTATTCCCGTTGTTTA
66 TTTTGTTACCAAACCAGAAATTAAAATTAAATAAAATAGGTTTCGAGATTTATTCCCGCCGTTCA
21536890 ACAGATTTTATT
131 ACAGATTTTATT
21536902 CGATTTTAAT
Statistics
Matches: 121, Mismatches: 20, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
160 71 0.59
161 50 0.41
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.43
Consensus pattern (161 bp):
AAAATTAAATAAAATCTATTTCGGGATTTATTCCCACCATTCAACAGATTTTATTCCATTTTTGA
TTTTGTTACCAAACCAGAAATTAAAATTAAATAAAATAGGTTTCGAGATTTATTCCCGCCGTTCA
ACAGATTTTATTTTGTTTCCAAATGAGCATT
Found at i:21537234 original size:77 final size:78
Alignment explanation
Indices: 21537075--21537234 Score: 171
Period size: 77 Copynumber: 2.1 Consensus size: 78
21537065 TTCGATCTTG
*
21537075 ATTTTGTTTCCAAACGAAGACTTAATCAAATAATTTTGTTTCGGGATTAATTCCCACCGTTTAAC
1 ATTTTGTTTCCAAACGAAGACTTAATCAAATAATTTTGTTTCAGGATTAATTCCCACCGTTTAAC
* *** *****
21537140 AGATTTTATTTTG
66 AAATCCAAGGGAA
* * **
21537153 ATTTTGTTTCCAAAC-AAGATTTAATTAAATAATTTTGTTTCAGGATTTAA-TCCTGCCGTTTAA
1 ATTTTGTTTCCAAACGAAGACTTAATCAAATAATTTTGTTTCAGGA-TTAATTCCCACCGTTTAA
21537216 CAAATCCAAGGGAA
65 CAAATCCAAGGGAA
21537230 ATTTT
1 ATTTT
21537235 TCTGTTTATG
Statistics
Matches: 67, Mismatches: 14, Indels: 3
0.80 0.17 0.04
Matches are distributed among these distances:
77 48 0.72
78 19 0.28
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.41
Consensus pattern (78 bp):
ATTTTGTTTCCAAACGAAGACTTAATCAAATAATTTTGTTTCAGGATTAATTCCCACCGTTTAAC
AAATCCAAGGGAA
Found at i:21540221 original size:30 final size:30
Alignment explanation
Indices: 21540128--21540291 Score: 165
Period size: 29 Copynumber: 5.6 Consensus size: 30
21540118 TGTTTAAAAA
* * * *
21540128 AAAATTATATTTGGACCCCTCAAC-TTTTT
1 AAAATTACATTTTGACCCTTAAACTTTTTT
* * *
21540157 AAAATTTCACTTTGACCCCTAAAC-TTTTT
1 AAAATTACATTTTGACCCTTAAACTTTTTT
*
21540186 AAAATTACATTGTGACCCTTAAACTTTTTT
1 AAAATTACATTTTGACCCTTAAACTTTTTT
* * *
21540216 GAAATTGCATTTTGACCCTTGAACTTTTTT
1 AAAATTACATTTTGACCCTTAAACTTTTTT
* *
21540246 AAAATTATATTTTGACCC-T-AATTTTTTT
1 AAAATTACATTTTGACCCTTAAACTTTTTT
*
21540274 CAAAATTACATTTCGACC
1 -AAAATTACATTTTGACC
21540292 TAGAAGTTTT
Statistics
Matches: 114, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
28 8 0.07
29 60 0.53
30 46 0.40
ACGTcount: A:0.31, C:0.19, G:0.07, T:0.43
Consensus pattern (30 bp):
AAAATTACATTTTGACCCTTAAACTTTTTT
Found at i:21540273 original size:59 final size:59
Alignment explanation
Indices: 21540152--21540291 Score: 158
Period size: 59 Copynumber: 2.4 Consensus size: 59
21540142 ACCCCTCAAC
* *
21540152 TTTTTAAAATTTCACTTTGACCCCTAAACTTTTTAAAATTACATTGTGACCCTTAAACT
1 TTTTTAAAATTACATTTTGACCCCTAAACTTTTTAAAATTACATTGTGACCCTTAAACT
* * * * * * *
21540211 TTTTTGAAATTGCATTTTGACCCTTGAACTTTTTTAAAATTATATTTTGACCC-T-AATT
1 TTTTTAAAATTACATTTTGACCCCTAAAC-TTTTTAAAATTACATTGTGACCCTTAAACT
*
21540269 TTTTTCAAAATTACATTTCGACC
1 TTTTT-AAAATTACATTTTGACC
21540292 TAGAAGTTTT
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
58 8 0.12
59 39 0.57
60 21 0.31
ACGTcount: A:0.30, C:0.18, G:0.06, T:0.46
Consensus pattern (59 bp):
TTTTTAAAATTACATTTTGACCCCTAAACTTTTTAAAATTACATTGTGACCCTTAAACT
Found at i:21540293 original size:28 final size:28
Alignment explanation
Indices: 21540152--21540291 Score: 104
Period size: 30 Copynumber: 4.8 Consensus size: 28
21540142 ACCCCTCAAC
* **
21540152 TTTTTAAAATTTCACTTT-GACCCCTAAAC
1 TTTTTAAAATTACA-TTTCGA-CCCTAATT
*
21540181 TTTTTAAAATTACATTGT-GACCCTTAAACT
1 TTTTTAAAATTACATT-TCGACCC-T-AATT
* * * *
21540211 TTTTTGAAATTGCATTTTGACCCTTGAACT
1 TTTTTAAAATTACATTTCGACCC-T-AATT
* *
21540241 TTTTTAAAATTATATTTTGACCCTAATT
1 TTTTTAAAATTACATTTCGACCCTAATT
21540269 TTTTTCAAAATTACATTTCGACC
1 TTTTT-AAAATTACATTTCGACC
21540292 TAGAAGTTTT
Statistics
Matches: 94, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
28 13 0.14
29 34 0.36
30 47 0.50
ACGTcount: A:0.30, C:0.18, G:0.06, T:0.46
Consensus pattern (28 bp):
TTTTTAAAATTACATTTCGACCCTAATT
Found at i:21540567 original size:16 final size:15
Alignment explanation
Indices: 21540544--21540584 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
21540534 CAAAAAAAGA
21540544 AAAGAAAAGAGGAGG
1 AAAGAAAAGAGGAGG
21540559 AAAGAAAAAGAGGAGG
1 AAAG-AAAAGAGGAGG
21540575 --AGAAAAGAGG
1 AAAGAAAAGAGG
21540585 GAGTACCGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 8 0.32
14 2 0.08
15 4 0.16
16 11 0.44
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (15 bp):
AAAGAAAAGAGGAGG
Found at i:21540658 original size:3 final size:3
Alignment explanation
Indices: 21540650--21540714 Score: 51
Period size: 3 Copynumber: 21.3 Consensus size: 3
21540640 CAGTACGGCT
* * * *
21540650 AGA AGA AGA AGA AGGA AGA AGA AGA AGA AAA AAA AGAA AGA AAA AAA
1 AGA AGA AGA AGA A-GA AGA AGA AGA AGA AGA AGA AG-A AGA AGA AGA
* *
21540697 AGA A-A AAA AGA AAA AGA A
1 AGA AGA AGA AGA AGA AGA A
21540715 AAAATAAATT
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
2 2 0.04
3 44 0.85
4 6 0.12
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:21540669 original size:13 final size:13
Alignment explanation
Indices: 21540651--21540676 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
21540641 AGTACGGCTA
21540651 GAAGAAGAAGAAG
1 GAAGAAGAAGAAG
21540664 GAAGAAGAAGAAG
1 GAAGAAGAAGAAG
21540677 AAAAAAAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (13 bp):
GAAGAAGAAGAAG
Found at i:21540676 original size:9 final size:9
Alignment explanation
Indices: 21540650--21540718 Score: 61
Period size: 9 Copynumber: 7.7 Consensus size: 9
21540640 CAGTACGGCT
*
21540650 AGAAGAAGA
1 AGAAAAAGA
*
21540659 AGAAGGAAGA
1 AGAA-AAAGA
*
21540669 AGAAGAAGA
1 AGAAAAAGA
*
21540678 AAAAAAAGAA
1 AGAAAAAG-A
*
21540688 AGAAAAAAA
1 AGAAAAAGA
21540697 AGAAAAA-A
1 AGAAAAAGA
21540705 AGAAAAAGA
1 AGAAAAAGA
21540714 A-AAAA
1 AGAAAA
21540719 TAAATTATAT
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
8 12 0.23
9 25 0.47
10 16 0.30
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (9 bp):
AGAAAAAGA
Found at i:21540690 original size:13 final size:13
Alignment explanation
Indices: 21540674--21540715 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
21540664 GAAGAAGAAG
21540674 AAGAAAAAAAAGA
1 AAGAAAAAAAAGA
21540687 AAGAAAAAAAAGA
1 AAGAAAAAAAAGA
*
21540700 AAAAAAGAAAAAGA
1 AAGAAA-AAAAAGA
21540714 AA
1 AA
21540716 AAATAAATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
13 18 0.67
14 9 0.33
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (13 bp):
AAGAAAAAAAAGA
Found at i:21540704 original size:21 final size:21
Alignment explanation
Indices: 21540678--21540718 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
21540668 AAGAAGAAGA
21540678 AAAAAAAGAAAGAA-AAAAAAG
1 AAAAAAAGAAA-AAGAAAAAAG
21540699 AAAAAAAGAAAAAGAAAAAA
1 AAAAAAAGAAAAAGAAAAAA
21540719 TAAATTATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (21 bp):
AAAAAAAGAAAAAGAAAAAAG
Found at i:21540716 original size:13 final size:12
Alignment explanation
Indices: 21540671--21540718 Score: 60
Period size: 13 Copynumber: 3.8 Consensus size: 12
21540661 AAGGAAGAAG
*
21540671 AAGAAGAAAAAA
1 AAGAAAAAAAAA
21540683 AAGAAAGAAAAAA
1 AAGAAA-AAAAAA
21540696 AAGAAAAAAAGAAA
1 AAG-AAAAAA-AAA
21540710 AAGAAAAAA
1 AAGAAAAAA
21540719 TAAATTATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
12 5 0.16
13 18 0.56
14 9 0.28
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (12 bp):
AAGAAAAAAAAA
Found at i:21540836 original size:17 final size:17
Alignment explanation
Indices: 21540813--21540865 Score: 61
Period size: 18 Copynumber: 3.0 Consensus size: 17
21540803 AGGCTGGCCC
21540813 AAAAAAAAAACAAAGCAG
1 AAAAAAAAAA-AAAGCAG
* * *
21540831 AAAAAAACATAAAGTAG
1 AAAAAAAAAAAAAGCAG
21540848 AAAAAGAAAAAAAAGCAG
1 AAAAA-AAAAAAAAGCAG
21540866 CAGGCCATTT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
17 11 0.39
18 17 0.61
ACGTcount: A:0.75, C:0.08, G:0.13, T:0.04
Consensus pattern (17 bp):
AAAAAAAAAAAAAGCAG
Found at i:21541035 original size:9 final size:9
Alignment explanation
Indices: 21541021--21541051 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
21541011 AAAGAGAGGG
21541021 AAAAAAAGA
1 AAAAAAAGA
21541030 AAAAAAAGA
1 AAAAAAAGA
*
21541039 AAAAAAGGA
1 AAAAAAAGA
21541048 AAAA
1 AAAA
21541052 TGGTTCAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (9 bp):
AAAAAAAGA
Found at i:21551789 original size:78 final size:77
Alignment explanation
Indices: 21551354--21555312 Score: 3222
Period size: 78 Copynumber: 51.3 Consensus size: 77
21551344 TTTCAAGAAA
* *
21551354 TATTTTTCAATTTCTGTTTTTTTC-AAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGG
1 TATTTTTTAATTTCTG--TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
*
21551418 GT--CACGCTGAGG
64 GTCACACGCCGAGG
* * * ** *
21551430 TA-GTTTCAATTTCTGTTTTT---TAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TAGA
1 TATTTTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
*
21551490 CACATGCCGAGG
66 CACACGCCGAGG
* *
21551502 TATTTCTTTTAAATTTCTATTTTTC--AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCG
1 TA-TT-TTTT-AATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
21551565 GGTCACACGCCGAGG
63 GGTCACACGCCGAGG
* * * *
21551580 TATTTTTTTTAATTTCTGTTTTTCAAAAAAATCAACTTATAATCCGAGAGGTGAGTTGAGCCTCA
1 TA--TTTTTTAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
* *
21551645 GGT--CATGCTGAGG
63 GGTCACACGCCGAGG
* * **
21551658 TA-TTTTAAATTTCTATTTTT-TTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
1 TATTTTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
* *
21551721 CACACACCGAGA
66 CACACGCCGAGG
* * *
21551733 TATTTTTTAATTTCTGTTTTTCAAAAAAATCAACTGATAATACGAGAGGTGAGTTGAGCCTCGGG
1 TATTTTTTAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
**
21551798 T--CACGCTTAGG
65 TCACACGCCGAGG
* *** *
21551809 TA-TTTTAAATTTCTGTTTTT-TTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCGGGT
1 TATTTTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
* *
21551872 CACATGCCGATG
66 CACACGCCGAGG
* * *
21551884 TATCTTTTTTAATTTCTATTTTTCAAAAAAAAAATCAACTCATAGTGCGAGAAGTGAGTTGAGCC
1 TA--TTTTTTAATTTCTGTTTTTC----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
21551949 TCGGGT--CACGCTGAGG
60 TCGGGTCACACGCCGAGG
* * * * * *
21551965 TA-TTTTCAAATTCTGTTTTTTTTAAAAATTCAACTCATATTGTGAGAGGTGAGTTGAGCCT-TG
1 TATTTTTTAATTTCTG--TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
* *
21552028 GACACATGCCGAGG
64 GTCACACGCCGAGG
* * *
21552042 TATTTCTTTTAAATTTCTGTTTTT-AAAAAATCAACTCATACTGCGAGAGGAGAGTTGAGTCTCG
1 TA-TT-TTTT-AATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
21552106 GGTCACACGCC-AGGG
63 GGTCACACGCCGA-GG
*
21552121 TATTTTTTAATTTCTGTTTTTCAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGT
1 TATTTTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
*
21552186 --CACGCTGAGG
66 CACACGCCGAGG
* * ** *
21552196 TA-GTTTCAATTTCTGTTTTT--TTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGA
1 TATTTTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
* *
21552257 CACATGCCGATG
66 CACACGCCGAGG
* *
21552269 TATTTCTTTTAGATTTCTGTTTTTC-AAAAATCAACTCATATTGCAAGAGGTGAGTTAAGCCTCG
1 TA-TT-TTTTA-ATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
*
21552333 GGTCACACGCTGAGG
63 GGTCACACGCCGAGG
* * *
21552348 TATTTTTCTAATTTCTATTTTTCAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCCCGG
1 TATTTTT-TAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
**
21552413 GT--CACGCTAAGG
64 GTCACACGCCGAGG
* ** *
21552425 TA-TTTTAAATTT-T-TTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGA
1 TATTTTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
*
21552486 CACATGCCGAGG
66 CACACGCCGAGG
* * *
21552498 TATTTCTTTTAAATTTTTATTTTTCAAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCT
1 TA-TT-TTTT-AATTTCTGTTTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
**
21552563 CGGGTCACA--CTAAGG
61 CGGGTCACACGCCGAGG
* *
21552578 TA-TTTTCAAATTCTGTTTTT---AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
1 TATTTTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
21552639 CACACGCCGAGG
66 CACACGCCGAGG
* ** * *
21552651 TATCTTTTTTAATTTTTAATTTTCAAAAAAAAAATCAACTCATAATGCGAGAAGTGAGTTGAGCC
1 TA--TTTTTTAATTTCTGTTTTTC----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* *
21552716 CCGGGT--CACGCTGAGG
60 TCGGGTCACACGCCGAGG
* * * *** * ** * *
21552732 TA-TTTTCAATTTATATTTTTTTTTAAAATCAACTTATATTGTAAGAGGTGTGTTGAGCCT-TGG
1 TATTTTTTAATTTCT-GTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
* *
21552795 ACACATGCCGAGG
65 TCACACGCCGAGG
*
21552808 TATTTCTTTTAAATTTCTGTTTTTCAAAACAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCT
1 TA-TT-TTTT-AATTTCTGTTTTTC-AAA-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
*
21552873 CGGGT--CACGCTGAGG
61 CGGGTCACACGCCGAGG
* *
21552888 TA-TTTTTAATTTCTATTTTTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
1 TATTTTTTAATTTC---TGTTTTT-CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* *
21552952 --GTAAACATGCCGAGG
62 GGGT-CACACGCCGAGG
* *
21552967 TATTTCTTTTAAATTTCTGTTTTTC-AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCA
1 TA-TT-TTTT-AATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
*
21553031 GGTCACACGCTGAGG
63 GGTCACACGCCGAGG
* * * * * * * * * * *
21553046 TATGTTTTTTAATTTCTATTTTTC--ATAATGCGA--GA-AGTGAGTTGAGCCTCAGGTCA-CGC
1 TA--TTTTTTAATTTCTGTTTTTCAAAAAAT-CAACTCATATTGCG-AGAG-GTGAGTTGAGC-C
* **** * **
21553105 T-GATGT-A-TTTTCAATT
60 TCG-GGTCACACGCCGAGG
* * * * * *
21553121 TATGTTTT-GTTT-T-TTTTT----AAATTAACTCATATTGCGAGAGGTGAGTTAAGCCT-TGGA
1 TATTTTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
*
21553178 CACATGCCGAGG
66 CACACGCCGAGG
* * * *
21553190 TATTTCTTTTAAATTTTTGTTTTTC-AAAATTCAACTCATATTACGAGAGGTTAGTTGAGCCTCG
1 TA-TT-TTTT-AATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
* *
21553254 AGTCACACGCCGGGG
63 GGTCACACGCCGAGG
* * *
21553269 TATTTTTTAATTTCTGTTTTTCAAAAAAATCAACTTAGAATGCGAGAGGTGAGTTGAGCCTCGGG
1 TATTTTTTAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
*
21553334 T--CACGCTGAGG
65 TCACACGCCGAGG
* ** *** * ***
21553345 TA-GTTCCAATTTCTGTTTTT-TTTAAATCAACTCATATTGCGACAGGTGAGTTGAGCCTC-AAA
1 TATTTTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
* *
21553407 CATATGCCGAGG
66 CACACGCCGAGG
21553419 TATTTCTTTTAAATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
1 TA-TT-TTTT-AATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
*
21553483 GGTCACACGCTGAGG
63 GGTCACACGCCGAGG
* * * *
21553498 TATCTTTCTTAATTTCTATTTTTCAAAAAAAAAATAATCAACTCATAATGTGAGAAGTGAGTTGA
1 TAT-TTT-TTAATTTCTGTTTTTC------AAAA-AATCAACTCATATTGCGAGAGGTGAGTTGA
*
21553563 GCCTCGGGT--CACGCTGAGG
57 GCCTCGGGTCACACGCCGAGG
* * *** * *
21553582 TA-TTTTCAATTTTTGTTTTTTTTTTTAAAATCAACTCATATTGAGAGAGGTGAGTTGAGCCT-T
1 TATTTTTTAATTTCTG---TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
* *
21553645 GGACACATGCCGAGG
63 GGTCACACGCCGAGG
* *
21553660 TATTTCTTTTAAATTTCTGTTTTAC-AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
1 TA-TT-TTTT-AATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
*
21553724 GGT--CACGCTGAGG
63 GGTCACACGCCGAGG
* *** * *
21553737 TA-TTTTAAATTTCTGTTTTT-TTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGA
1 TATTTTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
*
21553799 CACATGCCGAGG
66 CACACGCCGAGG
* *
21553811 TATTTCTTTTAAATTTCTGTTTTAC-AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
1 TA-TT-TTTT-AATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
*
21553875 GGTCACACGCCGGGG
63 GGTCACACGCCGAGG
* *
21553890 TATTTTTTAAGTTT-TGTTTTTCAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTTGG
1 TATTTTTTAA-TTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
*
21553954 GT--CACGCTGAGG
64 GTCACACGCCGAGG
* * * ** *
21553966 TA-GTTTCAATTTATGTTTTT--TTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC--GA
1 TATTTTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
* *
21554026 CACATGTCGAGG
66 CACACGCCGAGG
* *
21554038 TATTTATTTTAAATTTCTGTTTTTC-AAAAATCAACTCATATTGTGAGAGTTGAGTTGAGCCTCG
1 TA-TT-TTTT-AATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
*
21554102 GGTCACACGCTGAGG
63 GGTCACACGCCGAGG
* *** * *
21554117 TA-TTTTCAATTTCTGTTTTTTTTAAAATCAACTAATATTGCGAGAGGTGAGTTGAGCCTCGTGT
1 TATTTTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
*
21554181 --CACGCTGAGG
66 CACACGCCGAGG
** * * * * *
21554191 TA-TTTTTAATTTCTGTTTTT-TTAAAATCATCTCATATTACAAGAGGTGAGTTGAGCCT-TGGA
1 TATTTTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
*
21554253 CACATGCCGAGG
66 CACACGCCGAGG
*
21554265 TATTTCTTTTAAATTTCTGTTTTTC-AAAAATCCAA-TCATATTGCTAGAGGTGAGTTGAGCCTC
1 TA-TT-TTTT-AATTTCTGTTTTTCAAAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTC
*
21554328 GGGTCATACGCCGAGG
62 GGGTCACACGCCGAGG
* * *
21554344 CATTTTTTTTAATTT-TCGTTTTTCAAAAAAATCAACTTATAATGCGAGAGGTGAGTTGAGCCTC
1 --TATTTTTTAATTTCT-GTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
*
21554408 GGGT--CACGCTGAGG
62 GGGTCACACGCCGAGG
* * * *
21554422 TA-TTTTAAATTTCTGTTTTT-TAAAAATGAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGA
1 TATTTTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
*
21554484 CACATGCCGAGG
66 CACACGCCGAGG
* *
21554496 TATTTCTTTTAAATTTTTGTTTTTCAAAAAAAATCAACTCATAATGCAGAAAAAAAGAGAGGTGA
1 TA-TT-TTTT-AATTTCTGTTTTTC--AAAAAATCAACTCATATTGC---------GAGAGGTGA
**
21554561 GTTGAGCCTCGGGTCACA--CTAAGG
52 GTTGAGCCTCGGGTCACACGCCGAGG
* * * * *
21554585 TA-TTTTCAAATTCTATTTTT--TAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGA
1 TATTTTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
* *
21554646 CACATGCTGAGG
66 CACACGCCGAGG
21554658 TATTTCTTTTAAATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
1 TA-TT-TTTT-AATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
21554722 GGTCACACGCCGAGG
63 GGTCACACGCCGAGG
* *
21554737 TATCTTTTTTAATTTCTAG-TTTTCAAAAAAAAAAATCAACTCATAATGCGAGAAGTGAGTTGAG
1 TA--TTTTTTAATTTCT-GTTTTTC-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* *
21554801 CCCCGGGT--CACGCTGAGG
58 CCTCGGGTCACACGCCGAGG
* *** * * * *
21554819 TA-TTTTCAATTTCTGTTTTTTTTAAAATCAACTTATATTGTGAGAGGTGAGTTGAGCCT-TGGA
1 TATTTTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
*
21554882 CACATGCCGAGG
66 CACACGCCGAGG
* *
21554894 TATTTCTTTTAAATTTCTATTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCG
1 TA-TT-TTTT-AATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
*
21554958 GGTCACATGCCGAGG
63 GGTCACACGCCGAGG
*
21554973 TATTTTTTAA-TT-T-TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGG
1 TATTTTTTAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
* *
21555035 T--CACGCTGATG
65 TCACACGCCGAGG
* *
21555046 TATTTTTTTTTAAATTTCTGTTTTTCATATAAAGAAAAATCAACTCATATTGCGAGAGGTAATTT
1 TA---TTTTTT-AATTTCTGTTTTTC------A-AAAAATCAACTCATATTGCGAGAGGTGAGTT
* *
21555111 GAGCCTC-GGACACATGCCGAGG
55 GAGCCTCGGGTCACACGCCGAGG
* *
21555133 TATTTCTTTTAAATTT-TGGTTTTTTC-TAAAATGAACTCATATTGCGAGAGGTGAGTTGAG-CT
1 TA-TT-TTTT-AATTTCT-G-TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* **
21555195 TGGGTCACATACCGAGG
61 CGGGTCACACGCCGAGG
* * * *
21555212 TATCTTTTAAATTTCTATTTTTCAAAAAGA--AACTCATAATGCTAGAGGTGAGTTGAGCCTCGG
1 TAT-TTTTTAATTTCTGTTTTTCAAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
* * *
21555275 GCCACACACCTAGG
64 GTCACACGCCGAGG
* *
21555289 TA-TTTTCAAGTTCTGTTTTTCAAA
1 TATTTTTTAATTTCTGTTTTTCAAA
21555313 GAAAAAGAAA
Statistics
Matches: 3141, Mismatches: 486, Indels: 513
0.76 0.12 0.12
Matches are distributed among these distances:
67 2 0.00
68 11 0.00
69 10 0.00
70 12 0.00
71 93 0.03
72 151 0.05
73 286 0.09
74 126 0.04
75 253 0.08
76 287 0.09
77 307 0.10
78 704 0.22
79 313 0.10
80 123 0.04
81 140 0.04
82 33 0.01
83 81 0.03
84 56 0.02
85 21 0.01
86 85 0.03
87 16 0.01
89 6 0.00
90 19 0.01
91 6 0.00
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (77 bp):
TATTTTTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
CACACGCCGAGG
Found at i:21551810 original size:151 final size:151
Alignment explanation
Indices: 21551357--21555317 Score: 3332
Period size: 151 Copynumber: 25.7 Consensus size: 151
21551347 CAAGAAATAT
* * *
21551357 TTTTCAATTTCTGTTTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGT--
1 TTTTAAATTTCTATTTTTTT--AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
* * * *
21551420 CACGCTGAGGTA-GTTTCAATTTCTGTTTTT----TAAATCAACTCATATTGCGAGAGGTGAGTT
64 CACGCCGAGGTATTTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
** * *
21551480 GAGCCT-TAGACACATGCCGAGGTA
129 GAGCCTCGGGTCAC--GCTGAGGTA
* *
21551504 TTTCTTTTAAATTTCTA-TTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGT
1 ----TTTTAAATTTCTATTTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
* * *
21551568 CACACGCCGAGGTATTTTTTTTAATTTCTGTTTTTCAAAAAAATCAACTTATAATCCGAGAGGTG
62 CACACGCCGAGGTA--TTTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTG
* *
21551633 AGTTGAGCCTCAGGTCATGCTGAGGTA
125 AGTTGAGCCTCGGGTCACGCTGAGGTA
21551660 TTTTAAATTTCTATTTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
1 TTTTAAATTTCTATTTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
* * * * *
21551725 CACCGAGATATTTTTTAATTTCTGTTTTTCAAAAAAATCAACTGATAATACGAGAGGTGAGTTGA
66 CGCCGAGGTATTTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
*
21551790 GCCTCGGGTCACGCTTAGGTA
131 GCCTCGGGTCACGCTGAGGTA
* * *
21551811 TTTTAAATTTCTGTTTTTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCGGGTCACA
1 TTTTAAATTTCTATTTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
* * * * *
21551876 TGCCGATGTATCTTTTTTAATTTCTATTTTTCAAAAAAAAAATCAACTCATAGTGCGAGAAGTGA
66 CGCCGAGGTA--TTTTTTAATTTCTGTTTTTC---AAAAAAATCAACTCATATTGCGAGAGGTGA
21551941 GTTGAGCCTCGGGTCACGCTGAGGTA
126 GTTGAGCCTCGGGTCACGCTGAGGTA
* * * *
21551967 TTTTCAAA-TTCTGTTTTTTTTAAAAATTCAACTCATATTGTGAGAGGTGAGTTGAGCCT-TGGA
1 TTTT-AAATTTCT-ATTTTTTT-AAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
* * *
21552030 CACATGCCGAGGTATTTCTTTTAAATTTCTGTTTTT--AAAAAATCAACTCATACTGCGAGAGGA
62 CACACGCCGAGGTA-TT-TTTT-AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGT
* *
21552093 GAGTTGAGTCTCGGGTCACACGC-CAGGGTA
124 GAGTTGAGCCTCGGGT--CACGCTGA-GGTA
* * ** *
21552123 TTTTTTAATTTCTGTTTTTCAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGT--
1 -TTTTAAATTTCTATTTTT-TTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
* * * **
21552186 CACGCTGAGGTA-GTTTCAATTTCTGTTTTT---TTAAATCAACTCATATTGCGAGAGGTGAGTT
64 CACGCCGAGGTATTTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* * *
21552247 GAGCCTC-GGACACATGCCGATGTA
129 GAGCCTCGGGTCAC--GCTGAGGTA
* * ** * *
21552271 TTTCTTTTAGATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTAAGCCTCGGGT
1 ----TTTTAAATTTCTATTTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
* * *
21552336 CACACGCTGAGGTATTTTTCTAATTTCTATTTTTCAAAAAAATCAACTCATAATGCGAGAGGTGA
62 CACACGCCGAGGTATTTTT-TAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGA
* *
21552401 GTTGAGCCCCGGGTCACGCTAAGGTA
126 GTTGAGCCTCGGGTCACGCTGAGGTA
*
21552427 TTTTAAATTT-T-TTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACAC
1 TTTTAAATTTCTATTTTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC
* * * *
21552489 ATGCCGAGGTATTTCTTTTAAATTTTTATTTTTCAAAAAAAATCAACTCATAATGCGAGAGGTGA
65 ACGCCGAGGTA-TT-TTTT-AATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGA
* *
21552554 GTTGAGCCTCGGGTCACACTAAGGTA
126 GTTGAGCCTCGGGTCACGCTGAGGTA
*
21552580 TTTTCAAA-TTC--TGTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC
1 TTTT-AAATTTCTATTTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC
* ** * *
21552642 ACGCCGAGGTATCTTTTTTAATTTTTAATTTTCAAAAAAAAAATCAACTCATAATGCGAGAAGTG
65 ACGCCGAGGTA--TTTTTTAATTTCTGTTTTTC---AAAAAAATCAACTCATATTGCGAGAGGTG
*
21552707 AGTTGAGCCCCGGGTCACGCTGAGGTA
125 AGTTGAGCCTCGGGTCACGCTGAGGTA
* * * ** * * *
21552734 TTTTCAATTTATATTTTTTTTTAAAATCAACTTATATTGTAAGAGGTGTGTTGAGCCT-TGGACA
1 TTTTAAATTTCTA--TTTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
* *
21552798 CATGCCGAGGTATTTCTTTTAAATTTCTGTTTTTCAAAACAAATCAACTCATAATGCGAGAGGTG
64 CACGCCGAGGTA-TT-TTTT-AATTTCTGTTTTTCAAAA-AAATCAACTCATATTGCGAGAGGTG
21552863 AGTTGAGCCTCGGGTCACGCTGAGGTA
125 AGTTGAGCCTCGGGTCACGCTGAGGTA
*
21552890 TTTTTAATTTCTATTTTTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC--G
1 TTTTAAATTTCTA-TTTTTTT----AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
* * *
21552953 TAAACATGCCGAGGTATTTCTTTTAAATTTCTGTTTTTC--AAAAATCAACTCATATTGTGAGAG
61 T-CACACGCCGAGGTA-TT-TTTT-AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAG
*
21553016 GTGAGTTGAGCCTCAGGTCACACGCTGAGGTA
122 GTGAGTTGAGCCTCGGGT--CACGCTGAGGTA
* * *
21553048 TGTTTTTTAATTTCTA---TTTT----TC-A-T-A-A-TGCGAGAAGTGAGTTGAGCCTCAGGT-
1 ---TTTTAAATTTCTATTTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
* * * * **** *
21553100 -CACGCTGATGTATTTTCAATTTATGTTTTGTTTTT-TTTTAAATTAACTCATATTGCGAGAGGT
63 ACACGCCGAGGTATTTT---TTAAT-TTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGT
* * * *
21553163 GAGTTAAGCCT-TGGACACATGCCGAGGTA
124 GAGTTGAGCCTCGGGTCAC--GCTGAGGTA
* * * *
21553192 TTTCTTTTAAATTT-T-TGTTTTTCAAAATTCAACTCATATTACGAGAGGTTAGTTGAGCCTCGA
1 ----TTTTAAATTTCTAT-TTTTTTAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
* * * *
21553255 GTCACACGCCGGGGTATTTTTTAATTTCTGTTTTTCAAAAAAATCAACTTAGAATGCGAGAGGTG
60 GTCACACGCCGAGGTATTTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTG
21553320 AGTTGAGCCTCGGGTCACGCTGAGGTA
125 AGTTGAGCCTCGGGTCACGCTGAGGTA
* ** * * * *** *
21553347 GTTCCAATTTCTGTTTTTTTTAAATCAACTCATATTGCGACAGGTGAGTTGAGCCTC-AAACATA
1 TTTTAAATTTCTATTTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
*
21553411 TGCCGAGGTATTTCTTTTAAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGT
66 CGCCGAGGTA-TT-TTTT-AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
21553474 TGAGCCTCGGGTCACACGCTGAGGTA
128 TGAGCCTCGGGT--CACGCTGAGGTA
* ** * * *
21553500 TCTTTCTTAATTTCTATTTTTCAAAAAAAAAATAATCAACTCATAATGTGAGAAGTGAGTTGAGC
1 --TTT-TAAATTTCTATTTTT-------TTAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * * **** *
21553565 CTCGGGT--CACGCTGAGGTA-TTTTCAATTTTTGTTTTTTTTTTTAAAATCAACTCATATTGAG
55 CTCGGGTCACACGCCGAGGTATTTTTTAATTTCTG--TTTTTCAAAAAAATCAACTCATATTGCG
* * *
21553627 AGAGGTGAGTTGAGCCT-TGGACACATGCCGAGGTA
118 AGAGGTGAGTTGAGCCTCGGGTCAC--GCTGAGGTA
* **
21553662 TTTCTTTTAAATTTCT-GTTTTACAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
1 ----TTTTAAATTTCTATTTTTTTAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
* * ***
21553726 T--CACGCTGAGGTA-TTTTAAATTTCTGTTTTT--TTTAAATCAACTCATATTGCGAGAGGTGA
61 TCACACGCCGAGGTATTTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGA
* * *
21553786 GTTGAGCCT-TGGACACATGCCGAGGTA
126 GTTGAGCCTCGGGTCAC--GCTGAGGTA
* **
21553813 TTTCTTTTAAATTTCT-GTTTTACAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
1 ----TTTTAAATTTCTATTTTTTTAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
* *
21553877 TCACACGCCGGGGTATTTTTTAAGTTT-TGTTTTTCAAAAAAATCAACTCATAATGCGAGAGGTG
61 TCACACGCCGAGGTATTTTTTAA-TTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTG
*
21553941 AGTTGAGCCTTGGGTCACGCTGAGGTA
125 AGTTGAGCCTCGGGTCACGCTGAGGTA
* * * * *
21553968 GTTTCAATTTATGTTTTTTT-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC--GACACA
1 TTTTAAATTTCTATTTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
* * * *
21554030 TGTCGAGGTATTTATTTTAAATTTCTGTTTTTC--AAAAATCAACTCATATTGTGAGAGTTGAGT
66 CGCCGAGGTA-TT-TTTT-AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
21554093 TGAGCCTCGGGTCACACGCTGAGGTA
128 TGAGCCTCGGGT--CACGCTGAGGTA
* * * *
21554119 TTTTCAATTTCTGTTTTTTTTAAAATCAACTAATATTGCGAGAGGTGAGTTGAGCCTCGTGT--C
1 TTTTAAATTTCT-ATTTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC
* ** * * *
21554182 ACGCTGAGGTA-TTTTTAATTTCTGTTTTT--TTAAAATCATCTCATATTACAAGAGGTGAGTTG
65 ACGCCGAGGTATTTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * *
21554244 AGCCT-TGGACACATGCCGAGGTA
130 AGCCTCGGGTCAC--GCTGAGGTA
* ** *
21554267 TTTCTTTTAAATTTCTGTTTTTCAAAAATCCAA-TCATATTGCTAGAGGTGAGTTGAGCCTCGGG
1 ----TTTTAAATTTCTATTTTTTTAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
* * * *
21554331 TCATACGCCGAGGCATTTTTTTTAATTT-TCGTTTTTCAAAAAAATCAACTTATAATGCGAGAGG
61 TCACACGCCGAGG--TATTTTTTAATTTCT-GTTTTTCAAAAAAATCAACTCATATTGCGAGAGG
21554395 TGAGTTGAGCCTCGGGTCACGCTGAGGTA
123 TGAGTTGAGCCTCGGGTCACGCTGAGGTA
* * * *
21554424 TTTTAAATTTCTGTTTTTTAAAAATGAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACA
1 TTTTAAATTTCTATTTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
* * *
21554488 TGCCGAGGTATTTCTTTTAAATTTTTGTTTTTCAAAAAAAATCAACTCATAATGCAGAAAAAAAG
66 CGCCGAGGTA-TT-TTTT-AATTTCTGTTTTTC-AAAAAAATCAACTCATATTGC---------G
* *
21554553 AGAGGTGAGTTGAGCCTCGGGTCACACTAAGGTA
118 AGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTA
*
21554587 TTTTCAAA-TTCTA-TTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACAC
1 TTTT-AAATTTCTATTTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC
* *
21554649 ATGCTGAGGTATTTCTTTTAAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAG
65 ACGCCGAGGTA-TT-TTTT-AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAG
*
21554712 TTGAGCCTCGGGTCACACGCCGAGGTA
127 TTGAGCCTCGGGT--CACGCTGAGGTA
* *** * * *
21554739 TCTTTTTTAATTTCTAGTTTTCAAAAAAAAAAATCAACTCATAATGCGAGAAGTGAGTTGAGCCC
1 ---TTTTAAATTTCTA-TTTT-----TTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* * *** * *
21554804 CGGGT--CACGCTGAGGTA-TTTTCAATTTCTGTTTTT-TTTAAAATCAACTTATATTGTGAGAG
57 CGGGTCACACGCCGAGGTATTTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAG
* * *
21554865 GTGAGTTGAGCCT-TGGACACATGCCGAGGTA
122 GTGAGTTGAGCCTCGGGTCAC--GCTGAGGTA
** *
21554896 TTTCTTTTAAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGT
1 ----TTTTAAATTTCTATTTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
*
21554961 CACATGCCGAGGTATTTTTTAA-TT-T-TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAG
62 CACACGCCGAGGTATTTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAG
* *
21555023 TTAAGCCTCGGGTCACGCTGATGTA
127 TTGAGCCTCGGGTCACGCTGAGGTA
* * *
21555048 TTTTTTTTTAAATTTCTGTTTTTCATATAAAGAAAAATCAACTCATATTGCGAGAGGTAATTTGA
1 -----TTTTAAATTTCTATTTTT--T-T-----AAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * * *
21555113 GCCTC-GGACACATGCCGAGGTATTTCTTTTAAATTT-TGGTTTTTTC--TAAAATGAACTCATA
53 GCCTCGGGTCACACGCCGAGGTA-TT-TTTT-AATTTCT-G-TTTTTCAAAAAAATCAACTCATA
* * *
21555174 TTGCGAGAGGTGAGTTGAG-CTTGGGTCACATACCGAGGTA
113 TTGCGAGAGGTGAGTTGAGCCTCGGGTCAC--GCTGAGGTA
** ** * * *
21555214 TCTTTTAAATTTCTATTTTTCAAAAAGAAACTCATAATGCTAGAGGTGAGTTGAGCCTCGGGCCA
1 --TTTTAAATTTCTATTTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
* * * *
21555279 CACACCTAGGTA-TTTTCAAGTTCTGTTTTTCAAAGAAAA
64 CACGCCGAGGTATTTTTTAATTTCTGTTTTTCAAA-AAAA
21555318 AGAAATTTTT
Statistics
Matches: 3204, Mismatches: 378, Indels: 453
0.79 0.09 0.11
Matches are distributed among these distances:
141 2 0.00
142 5 0.00
143 11 0.00
144 43 0.01
145 43 0.01
146 9 0.00
147 4 0.00
148 69 0.02
149 120 0.04
150 167 0.05
151 497 0.16
152 222 0.07
153 398 0.12
154 186 0.06
155 186 0.06
156 305 0.10
157 181 0.06
158 173 0.05
159 154 0.05
160 22 0.01
161 66 0.02
162 131 0.04
163 116 0.04
164 51 0.02
165 31 0.01
166 6 0.00
167 6 0.00
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (151 bp):
TTTTAAATTTCTATTTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
CGCCGAGGTATTTTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
GCCTCGGGTCACGCTGAGGTA
Found at i:21552483 original size:229 final size:229
Alignment explanation
Indices: 21551357--21555280 Score: 3454
Period size: 229 Copynumber: 16.9 Consensus size: 229
21551347 CAAGAAATAT
* *
21551357 TTTTCAATTTCTGTTTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGT--
1 TTTTAAATTTCTG--TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
* * *
21551420 CACGCTGAGGTA-GTTTCAATTTCTGTTTTT--TAAATCAACTCATATTGCGAGAGGTGAGTTGA
64 CACGCTGAGGTATTTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
** * * * *
21551482 GCCT-TAGACACATGCCGAGGTATTTCTTTTAAATTTC-TATTTTTCAAAATCAACTCATATTGC
129 GCCTCGGGTCAC--GCTGAGGTA--T-TTTTAAATTTCTTTTTTTTAAAAATCAACTCATATTGC
* *
21551545 TAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATTT-
189 GAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTC
* * * * *
21551585 TTTTTAATTTCTGTTTTTCAAAAAAATCAACTTATAATCCGAGAGGTGAGTTGAGCCTCAGGT--
1 TTTTAAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
* * * **
21551648 CATGCTGAGGTA-TTTTAAATTTCTATTTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGA
64 CACGCTGAGGTATTTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * * * ** * * *
21551712 GCCTCGGGTCACACACCGAGATATTTTTTAATTTCTGTTTTTCAAAAAAATCAACTGATAATACG
129 GCCTCGGGT--CACGCTGAGGTATTTTTAAATTTCT-TTTTT-TTAAAAATCAACTCATATTGCG
**
21551777 AGAGGTGAGTTGAGCCTCGGGTCAC--GCTTAGGTA----
190 AGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTC
*** *
21551811 TTTTAAATTTCTGTTTTTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCGGGTCACA
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
* * * * * *
21551876 TGCCGATGTATCTTTTTTAATTTCTATTTTTCAAAAAAAAAATCAACTCATAGTGCGAGAAGTGA
66 CGCTGAGGTA--TTTTTTAATTTCTGTTTTTC-----AAAAATCAACTCATATTGCGAGAGGTGA
* *
21551941 GTTGAGCCTCGGGTCACGCTGAGGTATTTTCAAATTCTGTTTTTTTTAAAAATTCAACTCATATT
124 GTTGAGCCTCGGGTCACGCTGAGGTATTTTTAAATT-TCTTTTTTTTAAAAA-TCAACTCATATT
* * *
21552006 GTGAGAGGTGAGTTGAGCCT-TGGACACATGCCGAGGTATTTC
187 GCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTC
* * * *
21552048 TTTTAAATTTCTGTTTTTAAAAAATCAACTCATACTGCGAGAGGAGAGTTGAGTCTCGGGTCACA
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
* *
21552113 CGC-CAGGGTATTTTTTAATTTCTGTTTTTCAAAAAATCAACTCATAATGCGAGAGGTGAGTTGA
66 CGCTGA-GGTATTTTTTAATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* *
21552177 GCCTCGGGTCACGCTGAGGTA-GTTTCAATTTCTGTTTTTTT--AAATCAACTCATATTGCGAGA
129 GCCTCGGGTCACGCTGAGGTATTTTTAAATTTCT-TTTTTTTAAAAATCAACTCATATTGCGAGA
* *
21552239 GGTGAGTTGAGCCTC-GGACACATGCCGATGTATTTC
193 GGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTC
* * *
21552275 TTTTAGATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTAAGCCTCGGGTCACA
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
* *
21552340 CGCTGAGGTATTTTTCTAATTTCTATTTTTCAAAAAAATCAACTCATAATGCGAGAGGTGAGTTG
66 CGCTGAGGTATTTTT-TAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTG
* *
21552405 AGCCCCGGGTCACGCTAAGGTA-TTTTAAATTT-TTTTTTTTAAAAATCAACTCATATTGCGAGA
128 AGCCTCGGGTCACGCTGAGGTATTTTTAAATTTCTTTTTTTTAAAAATCAACTCATATTGCGAGA
*
21552468 GGTGAGTTGAGCCTC-GGACACATGCCGAGGTATTTC
193 GGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTC
* * *
21552504 TTTTAAATTTTTATTTTTCAAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTC
1 TTTTAAATTTCTGTTTTTC---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
* * *
21552569 ACA--CTAAGGTA-TTTTCAAATTCTGTTTTT--AAAATCAACTCATATTGCGAGAGGTGAGTTG
63 ACACGCTGAGGTATTTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * **
21552629 AGCCTCGGGTCACACGCCGAGGTATCTTTTTTAATTT-TTAATTTTCAAAAAAAAAATCAACTCA
128 AGCCTCGGGT--CACGCTGAGGTA--TTTTTAAATTTCTT--TTTT----TTAAAAATCAACTCA
* * * *
21552693 TAATGCGAGAAGTGAGTTGAGCCCCGGGTCAC--GCTGAGGTATTTTC
183 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTA-TTTC
* * * ** * * *
21552739 AATTTATATTT-T-TTTTT--AAAATCAACTTATATTGTAAGAGGTGTGTTGAGCCT-TGGACAC
1 -TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC
* * *
21552799 ATGCCGAGGTATTTCTTTTAAATTTCTGTTTTTCAAAACAAATCAACTCATAATGCGAGAGGTGA
65 ACGCTGAGGTA-TT-TTTT-AATTTCTGTTTTTC--AA-AAATCAACTCATATTGCGAGAGGTGA
21552864 GTTGAGCCTCGGGTCACGCTGAGGTATTTTT-AATTTCTATTTTTTTTAAAAAAAATCAACTCAT
124 GTTGAGCCTCGGGTCACGCTGAGGTATTTTTAAATTTC--TTTTTTTT---AAAAATCAACTCAT
*
21552928 ATTGCGAGAGGTGAGTTGAGCCTC--GTAAACATGCCGAGGTATTTC
184 ATTGCGAGAGGTGAGTTGAGCCTCGGGT-CACATGCCGAGGTATTTC
* *
21552973 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACA
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
* *
21553038 CGCTGAGGTATGTTTTTTAATTTCT-ATTTT------TC-A-T-A-A-TGCGAGAAGTGAGTTGA
66 CGCTGAGGTA--TTTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * * * ** *
21553091 GCCTCAGGTCACGCTGATGTATTTTCAATTTATGTTTTGTTTTTTTTTAAATTAACTCATATTGC
129 GCCTCGGGTCACGCTGAGGTATTTTTAA---AT-TTCT-TTTTTTTAAAAATCAACTCATATTGC
* * *
21553156 GAGAGGTGAGTTAAGCCT-TGGACACATGCCGAGGTATTTC
189 GAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTC
* * * * *
21553196 TTTTAAATTTTTGTTTTTCAAAATTCAACTCATATTACGAGAGGTTAGTTGAGCCTCGAGTCACA
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
* * * * *
21553261 CGCCGGGGTATTTTTTAATTTCTGTTTTTCAAAAAAATCAACTTAGAATGCGAGAGGTGAGTTGA
66 CGCTGAGGTATTTTTTAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* ** * *
21553326 GCCTCGGGTCACGCTGAGGTA-GTTCCAATTTCTGTTTTTTT-TAAATCAACTCATATTGCGACA
129 GCCTCGGGTCACGCTGAGGTATTTTTAAATTTCT-TTTTTTTAAAAATCAACTCATATTGCGAGA
*** *
21553389 GGTGAGTTGAGCCTC-AAACATATGCCGAGGTATTTC
193 GGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTC
21553425 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
* * * *
21553490 CGCTGAGGTATCTTTCTTAATTTCTATTTTTCAAAAAAAAAATAATCAACTCATAATGTGAGAAG
66 CGCTGAGGTAT-TTT-TTAATTTCTGTTTTTC-------AAA-AATCAACTCATATTGCGAGAGG
* * * *
21553555 TGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTCAATTTTTGTTTTTTTTTTTAAAATCAACTCA
121 TGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAA--ATT-TCTTTTTTTTAAAAATCAACTCA
* * *
21553620 TATTGAGAGAGGTGAGTTGAGCCT-TGGACACATGCCGAGGTATTTC
183 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTC
* *
21553666 TTTTAAATTTCTGTTTTACAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT--CA
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
* ***
21553729 CGCTGAGGTA-TTTTAAATTTCTGTTTTTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
66 CGCTGAGGTATTTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * * * ** *
21553793 CT-TGGACACATGCCGAGGTATTTCTTTTAAATTTCTGTTTTACAAAATTCAACTCATATTGCGA
131 CTCGGGTCAC--GCTGAGGTA--T-TTTTAAATTTCTTTTTTTTAAAAATCAACTCATATTGCGA
* *
21553857 GAGGTGAGTTGAGCCTCGGGTCACACGCCGGGGTA-TT-
191 GAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTC
* * *
21553894 TTTTAAGTTT-TGTTTTTCAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTTGGGT--
1 TTTTAAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
* * * **
21553956 CACGCTGAGGTA-GTTTCAATTTATGTTTTT-TTAAATCAACTCATATTGCGAGAGGTGAGTTGA
64 CACGCTGAGGTATTTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
*** * * * *
21554019 GCCTCGACACATG-TCGAGGTATTTATTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGTG
129 GCCTCGGGTCACGCT-GAGGTA--T-TTTTAAATTTCTTTTTTTTAAAAATCAACTCATATTGCG
* * *
21554083 AGAGTTGAGTTGAGCCTCGGGTCACACGCTGAGGTA----
190 AGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTC
* ** * *
21554119 TTTTCAATTTCTGTTTTTTTTAAAATCAACTAATATTGCGAGAGGTGAGTTGAGCCTCGTGT--C
1 TTTTAAATTTCTG-TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC
** * * *
21554182 ACGCTGAGGTA-TTTTTAATTTCTGTTTTTTTAAAATCATCTCATATTACAAGAGGTGAGTTGAG
65 ACGCTGAGGTATTTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* * * * *
21554246 CCT-TGGACACATGCCGAGGTATTTCTTTTAAATTTCTGTTTTTCAAAAATCCAA-TCATATTGC
130 CCTCGGGTCAC--GCTGAGGTA--T-TTTTAAATTTCTTTTTTTTAAAAAT-CAACTCATATTGC
* * * * *
21554309 TAGAGGTGAGTTGAGCCTCGGGTCATACGCCGAGGCATTTT
189 GAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTC
* * *
21554350 TTTTAATTTTC-GTTTTTCAAAAAAATCAACTTATAATGCGAGAGGTGAGTTGAGCCTCGGGT--
1 TTTTAAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
* * *
21554412 CACGCTGAGGTA-TTTTAAATTTCTGTTTTTTAAAAATGAACTCATATTGCGAGAGGTGAGTTGA
64 CACGCTGAGGTATTTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * *
21554476 GCCTC-GGACACATGCCGAGGTATTTCTTTTAAATTT-TTGTTTTTCAAAAAAAATCAACTCATA
129 GCCTCGGGTCAC--GCTGAGGTA--T-TTTTAAATTTCTT-TTTTT---TAAAAATCAACTCATA
* **
21554539 ATGCAGAAAAAAAGAGAGGTGAGTTGAGCCTCGGGTCACA--CTAAGGTA--T-
185 TTGC---------GAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTC
* * * *
21554588 TTTCAAA-TTCTATTTTT-TAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACA
1 TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
*
21554650 TGCTGAGGTATTTCTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
66 CGCTGAGGTA-TT-TTTT-AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * ***
21554715 AGCCTCGGGTCACACGCCGAGGTATCTTTTTTAATTTCTAGTTTTCAAAAAAAAAAATCAACTCA
128 AGCCTCGGGT--CACGCTGAGGTA--TTTTTAAATTTCT--TTTT----TTTAAAAATCAACTCA
* * * *
21554780 TAATGCGAGAAGTGAGTTGAGCCCCGGGTCAC--GCTGAGGTA----
183 TATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTC
* ** * * * *
21554821 TTTTCAATTTCTGTTTTTTTTAAAATCAACTTATATTGTGAGAGGTGAGTTGAGCCT-TGGACAC
1 TTTTAAATTTCTG-TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC
* * *
21554885 ATGCCGAGGTATTTCTTTTAAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
65 ACGCTGAGGTA-TT-TTTT-AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
* * * ***
21554950 GAGTCTCGGGTCACATGCCGAGGTATTTTTTAATTT-TTTTTCAAAAAAATCAACTCATATTGCG
127 GAGCCTCGGGTCAC--GCTGAGGTATTTTTAAATTTCTTTTTTTTAAAAATCAACTCATATTGCG
* * * *
21555014 AGAGGTGAGTTAAGCCTCGGGTCAC--GCTGATGTATTTTT
190 AGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTA-TTTC
* *
21555053 TTTTAAATTTCTGTTTTTCATATAAAGAAAAATCAACTCATATTGCGAGAGGTAATTTGAGCCTC
1 TTTTAAATTTCTGTTTTTC--------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* * * * *
21555118 -GGACACATGCCGAGGTATTTCTTTTAAATTT-TGGTTTTTTCTAAAATGAACTCATATTGCGAG
58 GGGTCACACGCTGAGGTA-TT-TTTT-AATTTCT-G-TTTTTCAAAAATCAACTCATATTGCGAG
* * * * * **
21555181 AGGTGAGTTGAG-CTTGGGTCACATACCGAGGTATCTTTTAAATTTCTATTTTTCAAAAAGAAAC
118 AGGTGAGTTGAGCCTCGGGTCAC--GCTGAGGTAT-TTTTAAATTTCTTTTTTTTAAAAATCAAC
* * *
21555245 TCATAATGCTAGAGGTGAGTTGAGCCTCGGGCCACA
180 TCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
21555281 CACCTAGGTA
Statistics
Matches: 3149, Mismatches: 350, Indels: 380
0.81 0.09 0.10
Matches are distributed among these distances:
221 13 0.00
222 43 0.01
223 118 0.04
224 76 0.02
225 77 0.02
226 88 0.03
227 354 0.11
228 203 0.06
229 451 0.14
230 99 0.03
231 288 0.09
232 114 0.04
233 35 0.01
234 179 0.06
235 156 0.05
236 170 0.05
237 169 0.05
238 35 0.01
239 140 0.04
240 115 0.04
241 174 0.06
242 3 0.00
243 49 0.02
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.36
Consensus pattern (229 bp):
TTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
CGCTGAGGTATTTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
CTCGGGTCACGCTGAGGTATTTTTAAATTTCTTTTTTTTAAAAATCAACTCATATTGCGAGAGGT
GAGTTGAGCCTCGGGTCACATGCCGAGGTATTTC
Found at i:21555143 original size:86 final size:86
Alignment explanation
Indices: 21554994--21555274 Score: 260
Period size: 86 Copynumber: 3.5 Consensus size: 86
21554984 TTTTTTTCAA
* * * *
21554994 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCGGGTCAC--GCTGATGTATTTTTTTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCACATGCCGAGGTA-TTTCTTTT
21555057 AAATTTCTGTTTTTCATATAAAG
64 AAATTTCTGTTTTTCATATAAAG
* * *
21555080 AAAAATCAACTCATATTGCGAGAGGTAATTTGAGCCTCGGACACATGCCGAGGTATTTCTTTTAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCACATGCCGAGGTATTTCTTTTAA
*
21555145 ATTT-TGGTTTTT--TCT----
66 ATTTCT-GTTTTTCATATAAAG
* * * *
21555160 -AAAATGAACTCATATTGCGAGAGGTGAGTTGAGCTTGGGTCACATACCGAGGTA--TCTTTTAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCACATGCCGAGGTATTTCTTTTAA
*
21555222 ATTTCTATTTTTCA-A-AAAG
66 ATTTCTGTTTTTCATATAAAG
* *
21555241 ----A--AACTCATAATGCTAGAGGTGAGTTGAGCCTCGG
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
21555275 GCCACACACC
Statistics
Matches: 164, Mismatches: 21, Indels: 30
0.76 0.10 0.14
Matches are distributed among these distances:
76 29 0.18
77 17 0.10
78 2 0.01
79 47 0.29
84 2 0.01
85 6 0.04
86 54 0.33
87 7 0.04
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.35
Consensus pattern (86 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCACATGCCGAGGTATTTCTTTTAA
ATTTCTGTTTTTCATATAAAG
Found at i:21555290 original size:77 final size:76
Alignment explanation
Indices: 21555087--21555312 Score: 228
Period size: 79 Copynumber: 3.0 Consensus size: 76
21555077 AAGAAAAATC
* * *
21555087 AACTCATATTGCGAGAGGTAATTTGAGCCTC-GGACACATGCCGAGGTATTTCTTTTAAATTT-T
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACATACCGAGGTA--TCTTTTAAATTTCT
* *
21555150 GGTTTTTTCTAAAATG
64 --ATTTTTC-AAAAAG
* *
21555166 AACTCATATTGCGAGAGGTGAGTTGAG-CTTGGGTCACATACCGAGGTATCTTTTAAATTTCTAT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACATACCGAGGTATCTTTTAAATTTCTAT
21555230 TTTTCAAAAAG
66 TTTTCAAAAAG
* * * * * * * *
21555241 AAACTCATAATGCTAGAGGTGAGTTGAGCCTCGGGCCACACACCTAGGTA--TTTTCAAGTTCTG
1 -AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACATACCGAGGTATCTTTTAAATTTCTA
21555304 TTTTTCAAA
65 TTTTTCAAA
21555313 GAAAAAGAAA
Statistics
Matches: 127, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
75 24 0.19
76 31 0.24
77 29 0.23
78 3 0.02
79 40 0.31
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.35
Consensus pattern (76 bp):
AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACATACCGAGGTATCTTTTAAATTTCTAT
TTTTCAAAAAG
Found at i:21555477 original size:30 final size:29
Alignment explanation
Indices: 21555443--21555609 Score: 165
Period size: 29 Copynumber: 5.7 Consensus size: 29
21555433 GATTTCGTGT
21555443 TTTTTTAAATTTACATTTTAACCCCTAAAC
1 TTTTTTAAA-TTACATTTTAACCCCTAAAC
* * *
21555473 TTTTTAAAATTTCATTTTGACCCCTAAAC
1 TTTTTTAAATTACATTTTAACCCCTAAAC
* * * * *
21555502 TTTTTAAAATTGCATTGTGACCCTTAAAC
1 TTTTTTAAATTACATTTTAACCCCTAAAC
* *
21555531 TTTTTTGAAATTGCATTTTGACCCCTAAAC
1 TTTTTT-AAATTACATTTTAACCCCTAAAC
* * **
21555561 TTTCTTGAAATTATATTTTAA-CCCTAATT
1 TTT-TTTAAATTACATTTTAACCCCTAAAC
21555590 TTTTTTAAAATTACATTTTA
1 TTTTTT-AAATTACATTTTA
21555610 GCCTAGAAGT
Statistics
Matches: 117, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
28 2 0.02
29 70 0.60
30 43 0.37
31 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.05, T:0.47
Consensus pattern (29 bp):
TTTTTTAAATTACATTTTAACCCCTAAAC
Found at i:21555542 original size:59 final size:58
Alignment explanation
Indices: 21555444--21555608 Score: 179
Period size: 59 Copynumber: 2.8 Consensus size: 58
21555434 ATTTCGTGTT
* * *
21555444 TTTTTAAATTTACATTTTAACCCCTAAACTTTTTAAAATTTCATTTTGACCCCTAAAC
1 TTTTTAAAATTACATTGTAACCCCTAAACTTTTTAAAATTGCATTTTGACCCCTAAAC
* * * *
21555502 TTTTTAAAATTGCATTGTGACCCTTAAACTTTTTTGAAATTGCATTTTGACCCCTAAAC
1 TTTTTAAAATTACATTGTAACCCCTAAAC-TTTTTAAAATTGCATTTTGACCCCTAAAC
* * * ** *
21555561 TTTCTTGAAATTATATTTTAA-CCCTAATTTTTTTTAAAATTACATTTT
1 TTT-TTAAAATTACATTGTAACCCCTAA-ACTTTTTAAAATTGCATTTT
21555609 AGCCTAGAAG
Statistics
Matches: 87, Mismatches: 17, Indels: 5
0.80 0.16 0.05
Matches are distributed among these distances:
58 24 0.28
59 51 0.59
60 12 0.14
ACGTcount: A:0.31, C:0.17, G:0.05, T:0.47
Consensus pattern (58 bp):
TTTTTAAAATTACATTGTAACCCCTAAACTTTTTAAAATTGCATTTTGACCCCTAAAC
Found at i:21555889 original size:16 final size:15
Alignment explanation
Indices: 21555864--21555903 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
21555854 GAAAAAAGAG
21555864 AAGAAAAGAGGAGGA
1 AAGAAAAGAGGAGGA
21555879 AAGAGAAAGAGGAGG-
1 AAGA-AAAGAGGAGGA
21555894 -AGAAAAGAGG
1 AAGAAAAGAGG
21555904 GAGTACTGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 7 0.29
14 3 0.12
15 4 0.17
16 10 0.42
ACGTcount: A:0.57, C:0.00, G:0.42, T:0.00
Consensus pattern (15 bp):
AAGAAAAGAGGAGGA
Found at i:21555977 original size:3 final size:3
Alignment explanation
Indices: 21555969--21556033 Score: 60
Period size: 3 Copynumber: 21.3 Consensus size: 3
21555959 CGCCGCGACT
* *
21555969 AGA AGA AGA AGA AGGA AGA AGA AGA AGA AGA AAA AGAA AGA A-A AAA
1 AGA AGA AGA AGA A-GA AGA AGA AGA AGA AGA AGA AG-A AGA AGA AGA
* * *
21556015 AGA AAA AAA AGA AAA AGA A
1 AGA AGA AGA AGA AGA AGA A
21556034 AAAATAAATT
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
2 2 0.04
3 44 0.85
4 6 0.12
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:21555995 original size:9 final size:9
Alignment explanation
Indices: 21555969--21556037 Score: 70
Period size: 9 Copynumber: 7.7 Consensus size: 9
21555959 CGCCGCGACT
*
21555969 AGAAGAAGA
1 AGAAAAAGA
*
21555978 AGAAGGAAGA
1 AGAA-AAAGA
*
21555988 AGAAGAAGA
1 AGAAAAAGA
21555997 AGAAAAAGAA
1 AGAAAAAG-A
21556007 AGAAAAA-A
1 AGAAAAAGA
*
21556015 AGAAAAAAA
1 AGAAAAAGA
21556024 AGAAAAAGA
1 AGAAAAAGA
21556033 A-AAAA
1 AGAAAA
21556038 TAAATTATAT
Statistics
Matches: 55, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
8 12 0.22
9 26 0.47
10 17 0.31
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (9 bp):
AGAAAAAGA
Found at i:21556018 original size:8 final size:8
Alignment explanation
Indices: 21556000--21556037 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
21555990 AAGAAGAAGA
21556000 AAAAGAAAG
1 AAAA-AAAG
21556009 AAAAAAAG
1 AAAAAAAG
21556017 AAAAAAA-
1 AAAAAAAG
*
21556024 AGAAAAAG
1 AAAAAAAG
21556032 AAAAAA
1 AAAAAA
21556038 TAAATTATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
7 6 0.23
8 16 0.62
9 4 0.15
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:21556025 original size:17 final size:18
Alignment explanation
Indices: 21555996--21556030 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
21555986 GAAGAAGAAG
21555996 AAGAAAAAGAAAGAAAAA
1 AAGAAAAAGAAAGAAAAA
21556014 AAGAAAAA-AAAGAAAAA
1 AAGAAAAAGAAAGAAAAA
21556031 GAAAAAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (18 bp):
AAGAAAAAGAAAGAAAAA
Found at i:21556159 original size:16 final size:16
Alignment explanation
Indices: 21556133--21556182 Score: 73
Period size: 16 Copynumber: 3.0 Consensus size: 16
21556123 AGCCGGCCCA
21556133 AAAAGAAAACAAAGCAG
1 AAAA-AAAACAAAGCAG
21556150 AAAAAAAACAAAGCAG
1 AAAAAAAACAAAGCAG
*
21556166 AAAAAGAAAAAAAGCAG
1 AAAAA-AAACAAAGCAG
21556183 CAGGCCATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 17 0.55
17 14 0.45
ACGTcount: A:0.74, C:0.10, G:0.16, T:0.00
Consensus pattern (16 bp):
AAAAAAAACAAAGCAG
Found at i:21556170 original size:17 final size:18
Alignment explanation
Indices: 21556132--21556182 Score: 81
Period size: 17 Copynumber: 3.0 Consensus size: 18
21556122 AAGCCGGCCC
21556132 AAAAAGAAAACAAAGCAG
1 AAAAAGAAAACAAAGCAG
21556150 -AAAA-AAAACAAAGCAG
1 AAAAAGAAAACAAAGCAG
21556166 AAAAAGAAAA-AAAGCAG
1 AAAAAGAAAACAAAGCAG
21556183 CAGGCCATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
16 12 0.39
17 15 0.48
18 4 0.13
ACGTcount: A:0.75, C:0.10, G:0.16, T:0.00
Consensus pattern (18 bp):
AAAAAGAAAACAAAGCAG
Found at i:21556310 original size:21 final size:20
Alignment explanation
Indices: 21556285--21556349 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 20
21556275 AGCCCAGCAC
21556285 AAAAAGAAAAAAGAGAGGGAA
1 AAAAAGAAAAAAGA-AGGGAA
* **
21556306 AAAAAGAAAAAAAAAAGAAAAA
1 AAAAAG-AAAAAAGAAG-GGAA
21556328 AAAAAGAAAAAAGAA-GGAA
1 AAAAAGAAAAAAGAAGGGAA
21556347 AAA
1 AAA
21556350 TGGTTCAATT
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
19 5 0.14
21 16 0.44
22 15 0.42
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (20 bp):
AAAAAGAAAAAAGAAGGGAA
Found at i:21556318 original size:11 final size:11
Alignment explanation
Indices: 21556304--21556349 Score: 74
Period size: 11 Copynumber: 4.2 Consensus size: 11
21556294 AAAGAGAGGG
21556304 AAAAAAAGAAA
1 AAAAAAAGAAA
21556315 AAAAAAAGAAA
1 AAAAAAAGAAA
21556326 AAAAAAAGAAA
1 AAAAAAAGAAA
* *
21556337 AAAGAAGGAAA
1 AAAAAAAGAAA
21556348 AA
1 AA
21556350 TGGTTCAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 33 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:21556349 original size:18 final size:17
Alignment explanation
Indices: 21556305--21556342 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 17
21556295 AAGAGAGGGA
21556305 AAAAAAGAAAAAAAAAAG
1 AAAAAA-AAAAAAAAAAG
21556323 AAAAAAAAAAGAAAAAAG
1 AAAAAAAAAA-AAAAAAG
21556341 AA
1 AA
21556343 GGAAAAATGG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAAAAAAAG
Found at i:21556520 original size:5 final size:5
Alignment explanation
Indices: 21556510--21556534 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
21556500 TTATATTTTC
21556510 AATTT AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT AATTT AATTT
21556535 TAAATAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:21558296 original size:14 final size:14
Alignment explanation
Indices: 21558254--21558299 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
21558244 TTCAATTTAT
21558254 TTTAT-TTTATATA
1 TTTATATTTATATA
** *
21558267 TAAATATTTATTTA
1 TTTATATTTATATA
21558281 TTTATATTTATATA
1 TTTATATTTATATA
21558295 TTTAT
1 TTTAT
21558300 TCGTTAATGT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
13 3 0.12
14 23 0.88
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTATATTTATATA
Found at i:21558980 original size:17 final size:18
Alignment explanation
Indices: 21558958--21558993 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
21558948 CTAAAATTTT
21558958 ATTTTAA-TATATTATAC
1 ATTTTAATTATATTATAC
*
21558975 ATTTTAATTTTATTATAC
1 ATTTTAATTATATTATAC
21558993 A
1 A
21558994 CATTTTAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTTTAATTATATTATAC
Found at i:21561395 original size:34 final size:34
Alignment explanation
Indices: 21561325--21561395 Score: 79
Period size: 34 Copynumber: 2.1 Consensus size: 34
21561315 CTAGAGATTT
* * * *
21561325 AATTGAATAACTCAAAAAATGTGAACAGGGACAA
1 AATTGAATAACTCAAAAAATGGGAAAAGGAAAAA
* **
21561359 AATTGAATGACTCAAAAAATGGGAAAATTAAAAA
1 AATTGAATAACTCAAAAAATGGGAAAAGGAAAAA
21561393 AAT
1 AAT
21561396 ATAAAAAAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.56, C:0.08, G:0.15, T:0.20
Consensus pattern (34 bp):
AATTGAATAACTCAAAAAATGGGAAAAGGAAAAA
Found at i:21567010 original size:19 final size:19
Alignment explanation
Indices: 21566988--21567028 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
21566978 ATAATTTGAT
* *
21566988 TTGTTAAAAGATTTTTAAC
1 TTGTGAAAAGAATTTTAAC
*
21567007 TTGTGAAAATAATTTTAAC
1 TTGTGAAAAGAATTTTAAC
21567026 TTG
1 TTG
21567029 ATTTTAAAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.12, T:0.46
Consensus pattern (19 bp):
TTGTGAAAAGAATTTTAAC
Found at i:21568033 original size:31 final size:32
Alignment explanation
Indices: 21567974--21568039 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
21567964 GGCAAATTAC
21567974 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
21568006 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
21568037 AAG
1 AAG
21568040 TTATCTAAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 14 0.41
32 20 0.59
ACGTcount: A:0.47, C:0.12, G:0.11, T:0.30
Consensus pattern (32 bp):
AAGAGTAATTGAATCCTAATAAAAACTCTTTA
Found at i:21569914 original size:79 final size:78
Alignment explanation
Indices: 21569812--21570034 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
21569802 GCTCCTCGTT
* *
21569812 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
21569877 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
21569892 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
21569955 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
21569970 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
21570033 GA
63 GA
21570035 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:21569929 original size:39 final size:40
Alignment explanation
Indices: 21569812--21570034 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
21569802 GCTCCTCGTT
* *
21569812 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
21569852 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
21569892 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
21569931 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
21569970 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
21570011 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
21570035 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:21577898 original size:79 final size:78
Alignment explanation
Indices: 21577796--21578018 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
21577786 GCTCCTCGTT
* *
21577796 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
21577861 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
21577876 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
21577939 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
21577954 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
21578017 GA
63 GA
21578019 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:21577913 original size:39 final size:40
Alignment explanation
Indices: 21577796--21578018 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
21577786 GCTCCTCGTT
* *
21577796 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
21577836 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
21577876 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
21577915 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
21577954 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
21577995 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
21578019 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:21584759 original size:13 final size:12
Alignment explanation
Indices: 21584741--21584773 Score: 57
Period size: 13 Copynumber: 2.7 Consensus size: 12
21584731 GGTAGGTAAC
21584741 TTTTTTTTTGCGG
1 TTTTTTTTTGC-G
21584754 TTTTTTTTTGCG
1 TTTTTTTTTGCG
21584766 TTTTTTTT
1 TTTTTTTT
21584774 GTGTTTTTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.00, C:0.06, G:0.15, T:0.79
Consensus pattern (12 bp):
TTTTTTTTTGCG
Found at i:21584779 original size:11 final size:11
Alignment explanation
Indices: 21584742--21584781 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
21584732 GTAGGTAACT
21584742 TTTTTTTTGCGG
1 TTTTTTTTGC-G
21584754 TTTTTTTTTGCG
1 -TTTTTTTTGCG
*
21584766 TTTTTTTTGTG
1 TTTTTTTTGCG
21584777 TTTTT
1 TTTTT
21584782 GCTTTTTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 15 0.58
12 1 0.04
13 10 0.38
ACGTcount: A:0.00, C:0.05, G:0.17, T:0.78
Consensus pattern (11 bp):
TTTTTTTTGCG
Found at i:21584787 original size:15 final size:14
Alignment explanation
Indices: 21584769--21584811 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
21584759 TTTTGCGTTT
21584769 TTTTTGTGTTTTTGC
1 TTTTTGTGTTTTT-C
* *
21584784 TTTTTTTCTTTTTC
1 TTTTTGTGTTTTTC
21584798 TTTTTGTTGTTTTT
1 TTTTTG-TGTTTTT
21584812 TAAAGAATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 6 0.26
15 17 0.74
ACGTcount: A:0.00, C:0.07, G:0.12, T:0.81
Consensus pattern (14 bp):
TTTTTGTGTTTTTC
Found at i:21584790 original size:21 final size:19
Alignment explanation
Indices: 21584765--21584812 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 19
21584755 TTTTTTTTGC
*
21584765 GTTTTTTTTGTGTTTTTGCTT
1 GTTTTTTTT-TCTTTTTG-TT
*
21584786 TTTTTCTTTTTCTTTTTGTT
1 GTTTT-TTTTTCTTTTTGTT
21584806 GTTTTTT
1 GTTTTTT
21584813 AAAGAATAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 2 0.09
20 6 0.26
21 11 0.48
22 4 0.17
ACGTcount: A:0.00, C:0.06, G:0.12, T:0.81
Consensus pattern (19 bp):
GTTTTTTTTTCTTTTTGTT
Found at i:21585398 original size:31 final size:32
Alignment explanation
Indices: 21585339--21585403 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
21585329 GGCAAATTAC
21585339 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
21585371 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
21585402 AA
1 AA
21585404 ATTATCTAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 13 0.39
32 20 0.61
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.31
Consensus pattern (32 bp):
AAGAGTAATTGAATCCTAATAAAAACTCTTTA
Found at i:21587796 original size:28 final size:28
Alignment explanation
Indices: 21587761--21587844 Score: 89
Period size: 28 Copynumber: 3.0 Consensus size: 28
21587751 TATCATACAC
*
21587761 ATAAGATAGTCCTGACGAACTTCCACAT
1 ATAAGATAGTCTTGACGAACTTCCACAT
* * *
21587789 ATAAGATAGTCTTGGC-AGACTTCTACAC
1 ATAAGATAGTCTTGACGA-ACTTCCACAT
* * *
21587817 ATAAGATAATCTTGACGGACTTCGACAT
1 ATAAGATAGTCTTGACGAACTTCCACAT
21587845 TTATGGTAAT
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
27 1 0.02
28 44 0.98
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (28 bp):
ATAAGATAGTCTTGACGAACTTCCACAT
Found at i:21587944 original size:22 final size:22
Alignment explanation
Indices: 21587887--21587949 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 22
21587877 CATTCATACA
*
21587887 TCCCATAAAAGGG-ATCTCATATG
1 TCCCAT-AAAGGGCA-CTCAAATG
* *
21587910 TCCCATGAGGGGCACTCAAATG
1 TCCCATAAAGGGCACTCAAATG
*
21587932 TCCCATAAAGGGCTCTCA
1 TCCCATAAAGGGCACTCA
21587950 TATACTGGTG
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
22 26 0.79
23 7 0.21
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (22 bp):
TCCCATAAAGGGCACTCAAATG
Found at i:21590646 original size:7 final size:7
Alignment explanation
Indices: 21590621--21590664 Score: 61
Period size: 7 Copynumber: 6.0 Consensus size: 7
21590611 AAATTACAGG
21590621 AAAAATA
1 AAAAATA
*
21590628 AAATACAAA
1 AAA-A-ATA
21590637 AAAAATA
1 AAAAATA
21590644 AAAAATA
1 AAAAATA
21590651 AAAAATA
1 AAAAATA
21590658 AAAAATA
1 AAAAATA
21590665 TATTCTGTGG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
7 26 0.79
8 2 0.06
9 5 0.15
ACGTcount: A:0.84, C:0.02, G:0.00, T:0.14
Consensus pattern (7 bp):
AAAAATA
Found at i:21592524 original size:50 final size:50
Alignment explanation
Indices: 21592449--21592691 Score: 237
Period size: 50 Copynumber: 4.9 Consensus size: 50
21592439 CATTTGGGTA
*
21592449 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGAATTGGCATCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGAT
*
21592499 AAGAGGTCCCATGTAAGACCATGTCTGGTACATGGCATTGGC-TCTGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC-GAGAT
* * * *
21592549 GAGAGGTTCCC-TGTAAGACCATGTCTGGGACATGGCATGGGCACCGATAT
1 AAGAGG-TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGAT
* ** * * * *
21592599 GAGAACTCCAATGTAAGACCATATTTGGGATATGGCATTGGCAGTAC-AGGA-
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-T-CGA-GAT
* * * * *
21592650 AACA--TACCATGTAAGACTATGTCTGGGACATAGCTTTGGCAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
21592692 GTTATATTCA
Statistics
Matches: 160, Mismatches: 26, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
48 1 0.01
49 34 0.21
50 115 0.72
51 8 0.05
52 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGAT
Found at i:21592919 original size:16 final size:16
Alignment explanation
Indices: 21592898--21592928 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
21592888 GTTATTTAAG
21592898 CAAGTAAGTAAGTAAA
1 CAAGTAAGTAAGTAAA
*
21592914 CAAGTAAGTGAGTAA
1 CAAGTAAGTAAGTAA
21592929 GTAAAGAAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.06, G:0.23, T:0.19
Consensus pattern (16 bp):
CAAGTAAGTAAGTAAA
Found at i:21592927 original size:20 final size:20
Alignment explanation
Indices: 21592899--21592944 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
21592889 TTATTTAAGC
* *
21592899 AAGTAAGTAAGTAAACAAGT
1 AAGTGAGTAAGTAAACAAGA
*
21592919 AAGTGAGTAAGTAAAGAAGA
1 AAGTGAGTAAGTAAACAAGA
21592939 AAGTGA
1 AAGTGA
21592945 ATATCCTAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.54, C:0.02, G:0.26, T:0.17
Consensus pattern (20 bp):
AAGTGAGTAAGTAAACAAGA
Found at i:21609555 original size:19 final size:19
Alignment explanation
Indices: 21609528--21609566 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
21609518 ACATAAATTG
* *
21609528 TGGAATTTTTATAAATATT
1 TGGAATTTTAAAAAATATT
*
21609547 TGGATTTTTAAAAAATATT
1 TGGAATTTTAAAAAATATT
21609566 T
1 T
21609567 TCAATTATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.51
Consensus pattern (19 bp):
TGGAATTTTAAAAAATATT
Found at i:21609697 original size:18 final size:18
Alignment explanation
Indices: 21609670--21609707 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
21609660 CACCAATTTG
*
21609670 TTATTTGAGTT-TTTCAAA
1 TTATTCGAGTTATTT-AAA
21609688 TTATTCGAGTTATTTAAA
1 TTATTCGAGTTATTTAAA
21609706 TT
1 TT
21609708 GTAATATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.29, C:0.05, G:0.11, T:0.55
Consensus pattern (18 bp):
TTATTCGAGTTATTTAAA
Found at i:21610484 original size:28 final size:29
Alignment explanation
Indices: 21610431--21610485 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
21610421 TAGGCAGAAC
* *
21610431 AAAAATATAGATAACATATTAGACAAACT
1 AAAAATACAAATAACATATTAGACAAACT
*
21610460 AAAAATACAAATACCATATT-GACAAA
1 AAAAATACAAATAACATATTAGACAAA
21610486 TTTATTCTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 6 0.26
29 17 0.74
ACGTcount: A:0.60, C:0.13, G:0.05, T:0.22
Consensus pattern (29 bp):
AAAAATACAAATAACATATTAGACAAACT
Found at i:21612596 original size:6 final size:6
Alignment explanation
Indices: 21612581--21612650 Score: 59
Period size: 6 Copynumber: 10.8 Consensus size: 6
21612571 AACGATGTAA
* * *
21612581 AAAAATG AAAACG AAAAGG AAAAAG AAAAAG AAAGAAA AAGAAAG AAAAGAG
1 AAAAA-G AAAAAG AAAAAG AAAAAG AAAAAG AAA-AAG AA-AAAG AAAA-AG
*
21612633 AAAGAAG GAAAAG AAAAA
1 AAA-AAG AAAAAG AAAAA
21612651 AAACAGAACG
Statistics
Matches: 52, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
6 29 0.56
7 21 0.40
8 2 0.04
ACGTcount: A:0.76, C:0.01, G:0.21, T:0.01
Consensus pattern (6 bp):
AAAAAG
Found at i:21612617 original size:10 final size:10
Alignment explanation
Indices: 21612602--21612638 Score: 65
Period size: 10 Copynumber: 3.6 Consensus size: 10
21612592 CGAAAAGGAA
21612602 AAAGAAAAAG
1 AAAGAAAAAG
21612612 AAAGAAAAAG
1 AAAGAAAAAG
21612622 AAAGAAAAGAG
1 AAAGAAAA-AG
21612633 AAAGAA
1 AAAGAA
21612639 GGAAAAGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 18 0.69
11 8 0.31
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (10 bp):
AAAGAAAAAG
Found at i:21612629 original size:25 final size:24
Alignment explanation
Indices: 21612600--21612653 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
21612590 AACGAAAAGG
21612600 AAAAAGAAAAAGAAAGAAAAAGAAA
1 AAAAAGAAAAAG-AAGAAAAAGAAA
* * *
21612625 GAAAAGAGAAAGAAGGAAAAGAAA
1 AAAAAGAAAAAGAAGAAAAAGAAA
21612649 AAAAA
1 AAAAA
21612654 CAGAACGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 15 0.60
25 10 0.40
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (24 bp):
AAAAAGAAAAAGAAGAAAAAGAAA
Found at i:21612630 original size:15 final size:15
Alignment explanation
Indices: 21612593--21612650 Score: 71
Period size: 15 Copynumber: 3.7 Consensus size: 15
21612583 AAATGAAAAC
21612593 GAAAAGGAAAAAGAAA
1 GAAAA-GAAAAAGAAA
*
21612609 AAGAAAGAAAAAGAAA
1 GA-AAAGAAAAAGAAA
* *
21612625 GAAAAGAGAAAGAAG
1 GAAAAGAAAAAGAAA
21612640 GAAAAGAAAAA
1 GAAAAGAAAAA
21612651 AAACAGAACG
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
15 21 0.58
16 12 0.33
17 3 0.08
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (15 bp):
GAAAAGAAAAAGAAA
Found at i:21621575 original size:43 final size:43
Alignment explanation
Indices: 21621510--21621706 Score: 263
Period size: 43 Copynumber: 4.6 Consensus size: 43
21621500 TACGATTAGG
*
21621510 CTTCGGTTTATCCGATGATGCACTATATGTGCTAGTATATATA
1 CTTCGGTTTATCCGATGATGCACTATATGTGCTAGTATAGATA
* * * * * *
21621553 TTTTGGTTTATCCGATAATGCACTGTGTCTGCTAGT-TAGATA
1 CTTCGGTTTATCCGATGATGCACTATATGTGCTAGTATAGATA
** *
21621595 CTTCGGTTTATCCGATGATGCACTATGCGTGCCAGTATAGATA
1 CTTCGGTTTATCCGATGATGCACTATATGTGCTAGTATAGATA
*
21621638 CTTCGGTTTAGT-CGATGATGCACTGTATGTGCTAGTATAGATA
1 CTTCGGTTTA-TCCGATGATGCACTATATGTGCTAGTATAGATA
*
21621681 CTTCAGTTTATCCGATGATGCACTAT
1 CTTCGGTTTATCCGATGATGCACTAT
21621707 GTGCGCCAAT
Statistics
Matches: 131, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
42 35 0.27
43 95 0.73
44 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.38
Consensus pattern (43 bp):
CTTCGGTTTATCCGATGATGCACTATATGTGCTAGTATAGATA
Found at i:21621659 original size:85 final size:86
Alignment explanation
Indices: 21621510--21621707 Score: 283
Period size: 85 Copynumber: 2.3 Consensus size: 86
21621500 TACGATTAGG
** * * * *
21621510 CTTCGGTTTATCCGATGATGCACTATATGTGCTAGTATATATATTTTGGTTTATCCGATAATGCA
1 CTTCGGTTTATCCGATGATGCACTATGCGTGCCAGTATAGATACTTCGGTTTATCCGATAATGCA
*
21621575 CTGTGTCTGCTAGT-TAGATA
66 CTGTATCTGCTAGTATAGATA
*
21621595 CTTCGGTTTATCCGATGATGCACTATGCGTGCCAGTATAGATACTTCGGTTTAGT-CGATGATGC
1 CTTCGGTTTATCCGATGATGCACTATGCGTGCCAGTATAGATACTTCGGTTTA-TCCGATAATGC
*
21621659 ACTGTATGTGCTAGTATAGATA
65 ACTGTATCTGCTAGTATAGATA
*
21621681 CTTCAGTTTATCCGATGATGCACTATG
1 CTTCGGTTTATCCGATGATGCACTATG
21621708 TGCGCCAATA
Statistics
Matches: 101, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
85 68 0.67
86 33 0.33
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.38
Consensus pattern (86 bp):
CTTCGGTTTATCCGATGATGCACTATGCGTGCCAGTATAGATACTTCGGTTTATCCGATAATGCA
CTGTATCTGCTAGTATAGATA
Found at i:21628889 original size:4 final size:4
Alignment explanation
Indices: 21628880--21628904 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
21628870 CTTTCACCAT
21628880 TTAA TTAA TTAA TTAA TTAA TTAA T
1 TTAA TTAA TTAA TTAA TTAA TTAA T
21628905 ATTTTGAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:21629458 original size:20 final size:20
Alignment explanation
Indices: 21629421--21629463 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
21629411 TTAAGGGCTT
*
21629421 TTTTTTTTAAATTCAATATAG
1 TTTTATTTAAATTCAATA-AG
21629442 TTTTATTTAAATT-AATAAG
1 TTTTATTTAAATTCAATAAG
21629461 TTT
1 TTT
21629464 GAATATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.24
20 4 0.19
21 12 0.57
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (20 bp):
TTTTATTTAAATTCAATAAG
Found at i:21629593 original size:50 final size:52
Alignment explanation
Indices: 21629517--21629635 Score: 122
Period size: 52 Copynumber: 2.3 Consensus size: 52
21629507 TAATAAAGTT
*
21629517 ATGCATTTTGTAACTTC-CATGCTAG-TTAAG-CATGCATCA-TAAA-TAATGAC
1 ATGCATTATGTAAC-TCACATGCTAGTTTAAGTC-TGCATCATTAAATTAA-GAC
* * *
21629567 ATGCATTATGTAACTCACGTGTTAGTTTAAGTCTGCATCATTAAATTAAGTC
1 ATGCATTATGTAACTCACATGCTAGTTTAAGTCTGCATCATTAAATTAAGAC
* *
21629619 TTGCATTAAGTAACTCA
1 ATGCATTATGTAACTCA
21629636 TTTGTTCATT
Statistics
Matches: 58, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
49 2 0.03
50 19 0.33
51 12 0.21
52 22 0.38
53 3 0.05
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (52 bp):
ATGCATTATGTAACTCACATGCTAGTTTAAGTCTGCATCATTAAATTAAGAC
Found at i:21634336 original size:40 final size:40
Alignment explanation
Indices: 21634299--21634523 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
21634289 GCTACTCGTT
*
21634299 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
21634339 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
21634379 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
21634418 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
21634458 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
21634499 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
21634524 CATCATTCAA
Statistics
Matches: 167, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
38 2 0.01
39 33 0.20
40 119 0.71
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:21634410 original size:79 final size:79
Alignment explanation
Indices: 21634299--21634523 Score: 285
Period size: 79 Copynumber: 2.8 Consensus size: 79
21634289 GCTACTCGTT
* * *
21634299 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
21634364 ATTTAGTAACTCGCA
65 ATTTAGTAACTCGCA
* *
21634379 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCG
*
21634442 GATTTAGTATCTCGCA
64 GATTTAGTAACTCGCA
* * * * *
21634458 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
21634522 GA
64 GA
21634524 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 4 0.03
79 66 0.52
80 44 0.35
81 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
TTTAGTAACTCGCA
Found at i:21634483 original size:119 final size:120
Alignment explanation
Indices: 21634299--21634523 Score: 298
Period size: 119 Copynumber: 1.9 Consensus size: 120
21634289 GCTACTCGTT
21634299 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
21634364 ATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * * **
21634418 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACC
* *
21634480 CGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
63 CGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
21634524 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
118 6 0.07
119 65 0.71
120 21 0.23
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:21654911 original size:50 final size:50
Alignment explanation
Indices: 21654852--21655136 Score: 435
Period size: 50 Copynumber: 5.6 Consensus size: 50
21654842 TAATGCTATA
21654852 TCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATG
*
21654902 TCCCAGACATGGTCTTACAGGGGACCTCTCATCTTGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATG
* *
21654952 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGTCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATG
* *
21655002 TCCCAGACATGGTCTTACATTGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATG
* *
21655052 TCCTAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGATGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTC---ATCT---TGGTGCCAACGCCATG
* *
21655108 TCCCAGACAAGGTCTTACATGGGATCTCT
1 TCCCAGACATGGTCTTACATGGGACCTCT
21655137 TTACCTAAAT
Statistics
Matches: 216, Mismatches: 13, Indels: 6
0.92 0.06 0.03
Matches are distributed among these distances:
50 172 0.80
53 4 0.02
56 40 0.19
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATG
Found at i:21661661 original size:43 final size:44
Alignment explanation
Indices: 21661511--21661685 Score: 255
Period size: 44 Copynumber: 4.0 Consensus size: 44
21661501 TTTTATACTA
* *
21661511 GAAAAAAGAATTT-AAAAAGAGGAGAAGATAATATTGGATTGTT
1 GAAAAAAGAATTTCAAAAAGAGGAGAAGATAATCTTGGGTTGTT
* * *
21661554 GAAAAAATAATTTCAAAAAGAGGAAAAGATAATCTTAGGTTGTT
1 GAAAAAAGAATTTCAAAAAGAGGAGAAGATAATCTTGGGTTGTT
**
21661598 GAAAAAAGAATTTCAAAAAGAGGAGAAGATCTTCTTGGGTTGTT
1 GAAAAAAGAATTTCAAAAAGAGGAGAAGATAATCTTGGGTTGTT
* *
21661642 GAAAAAAGAATTT-AAAAAGAGGAGAAGATAAACATGGGTTGTT
1 GAAAAAAGAATTTCAAAAAGAGGAGAAGATAATCTTGGGTTGTT
21661685 G
1 G
21661686 GGTTGTTTGT
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
43 39 0.33
44 78 0.67
ACGTcount: A:0.48, C:0.03, G:0.23, T:0.25
Consensus pattern (44 bp):
GAAAAAAGAATTTCAAAAAGAGGAGAAGATAATCTTGGGTTGTT
Found at i:21683261 original size:48 final size:48
Alignment explanation
Indices: 21683181--21683338 Score: 228
Period size: 48 Copynumber: 3.3 Consensus size: 48
21683171 GGGAAGGATA
* *
21683181 TGAAAAGAGTAAGTTAATATGACTCT-CTATGTGATATATGTTACGTAT
1 TGAAATGAGTAAGTTAATATGACTCTGC-ATGTGATATATGTTATGTAT
* *
21683229 TGAAATGAGTAAGTTAATATGACCCTGCATGTGATATTTGTTATGTAT
1 TGAAATGAGTAAGTTAATATGACTCTGCATGTGATATATGTTATGTAT
* * *
21683277 TGAAATGAGTAAGTTAAAATGACTTTGTATGTGATATATGTTATGTAT
1 TGAAATGAGTAAGTTAATATGACTCTGCATGTGATATATGTTATGTAT
*
21683325 TGAAATAAGTAAGT
1 TGAAATGAGTAAGT
21683339 GATAACTCTT
Statistics
Matches: 99, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
48 98 0.99
49 1 0.01
ACGTcount: A:0.35, C:0.06, G:0.20, T:0.39
Consensus pattern (48 bp):
TGAAATGAGTAAGTTAATATGACTCTGCATGTGATATATGTTATGTAT
Found at i:21683814 original size:14 final size:14
Alignment explanation
Indices: 21683795--21683821 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
21683785 TTAAAGATGA
21683795 TTAAAAACTAAGGG
1 TTAAAAACTAAGGG
21683809 TTAAAAACTAAGG
1 TTAAAAACTAAGG
21683822 AAAAAATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.07, G:0.19, T:0.22
Consensus pattern (14 bp):
TTAAAAACTAAGGG
Found at i:21694039 original size:16 final size:17
Alignment explanation
Indices: 21694005--21694045 Score: 52
Period size: 15 Copynumber: 2.5 Consensus size: 17
21693995 ATTATTTTAA
21694005 ATTTT-ATTAAATCATAT
1 ATTTTAATTAAA-CATAT
21694022 ATTTTAATTAAA-ATAT
1 ATTTTAATTAAACATAT
21694038 A-TTTAATT
1 ATTTTAATT
21694046 TTAATTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 7 0.30
16 5 0.22
17 5 0.22
18 6 0.26
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTAATTAAACATAT
Found at i:21694116 original size:66 final size:65
Alignment explanation
Indices: 21694046--21694357 Score: 176
Period size: 61 Copynumber: 5.1 Consensus size: 65
21694036 ATATTTAATT
21694046 TTAATTATTTAAAATTATCTTTTATAGTATAATATATTATGATTTGAGTAAATTCATATAAGAAT
1 TTAATTATTTAAAATTAT-TTTTATAGTATAATATATTATGATTTGAGTAAATTCATATAAGAAT
21694111 A
65 A
* * * * **
21694112 TTAATTA-TTAAGAATT-TTATTA-A--ATTATATATT-TTAATT-A-T-AA-T-ATAT-TTAAT
1 TTAATTATTTAA-AATTATTTTTATAGTATAATATATTATGATTTGAGTAAATTCATATAAGAAT
21694165 A
65 A
* * *
21694166 ATAATTATGTT-AATTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAA
1 TTAATTAT-TTAAAATTAT-TTTTATAGTATAATATATTATGATTTGAGTAAATTCATATAAGAA
21694230 TA
64 TA
* * * * * * * * **
21694232 TTGATTA-TTAAGAATT-TTATTA-A--ATTATATATTTTAATTAT-AATATATTTA-ATAATTA
1 TTAATTATTTAA-AATTATTTTTATAGTATAATATATTATGATT-TGAGTAAATTCATATAAGAA
*
21694290 TG
64 TA
*
21694292 TT-A--ATTT---A-TA-TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATA
1 TTAATTATTTAAAATTATTTTTATAGTATAATATATTATGATTTGAGTAAATTCATATAAGAATA
*
21694349 TTGATTATT
1 TTAATTATT
21694358 AAGAATTTTA
Statistics
Matches: 181, Mismatches: 37, Indels: 62
0.65 0.13 0.22
Matches are distributed among these distances:
53 5 0.03
54 15 0.08
55 7 0.04
56 27 0.15
57 12 0.07
58 4 0.02
59 11 0.06
60 19 0.10
61 30 0.17
62 2 0.01
63 4 0.02
64 11 0.06
65 11 0.06
66 23 0.13
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (65 bp):
TTAATTATTTAAAATTATTTTTATAGTATAATATATTATGATTTGAGTAAATTCATATAAGAATA
Found at i:21694128 original size:120 final size:120
Alignment explanation
Indices: 21694004--21694413 Score: 702
Period size: 120 Copynumber: 3.4 Consensus size: 120
21693994 AATTATTTTA
* * * *
21694004 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATTTTAATTAT-TTAAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATTATAATTATGTT-AATTTATATTT
* *
21694068 TATAGTATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
* *
21694124 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATTATAATTATGTTAATTTATATTTT
21694189 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
*
21694244 AATTTTATTAAATTATATATTTTAATTATAATATATTT-A--ATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATTATAATTATGTTAATTTATATTTT
21694306 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
21694361 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATTATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATTATAATTATGTT
21694414 TAAATATGAT
Statistics
Matches: 277, Mismatches: 9, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
117 115 0.42
118 1 0.00
119 1 0.00
120 158 0.57
121 2 0.01
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATTATAATTATGTTAATTTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
Found at i:21694164 original size:15 final size:15
Alignment explanation
Indices: 21694129--21694180 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
21694119 TTAAGAATTT
*
21694129 TATTAAATTAT-ATA
1 TATTTAATTATAATA
21694143 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
21694157 TATTTAATAATAAT-
1 TATTTAATTATAATA
21694171 TATGTTAATT
1 TAT-TTAATT
21694181 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:21694390 original size:18 final size:18
Alignment explanation
Indices: 21694362--21694410 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 18
21694352 ATTATTAAGA
21694362 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAATTATAT
21694379 ATTTTAATTAAA--ATAT
1 ATTTTAATTAAATTATAT
21694395 A-TTTAATTATAATTAT
1 ATTTTAATTA-AATTAT
21694411 GTTTAAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 8 0.29
16 7 0.25
17 5 0.18
18 8 0.29
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTTTAATTAAATTATAT
Found at i:21694396 original size:16 final size:16
Alignment explanation
Indices: 21694362--21694416 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
21694352 ATTATTAAGA
21694362 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
21694379 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
21694395 A-TTTAATTATAAT-T
1 ATTTTAATTAAAATAT
21694409 ATGTTTAA
1 AT-TTTAA
21694417 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:21694626 original size:44 final size:45
Alignment explanation
Indices: 21694561--21694651 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
21694551 ACCTCTATTC
* * *
21694561 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
21694605 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
21694650 CA
1 CA
21694652 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:21694653 original size:16 final size:16
Alignment explanation
Indices: 21694632--21694700 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
21694622 GATTAGCTAT
21694632 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
21694648 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
21694665 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
21694681 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
21694697 TACA
1 TACA
21694701 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:21694674 original size:33 final size:32
Alignment explanation
Indices: 21694632--21694700 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
21694622 GATTAGCTAT
21694632 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
21694665 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
21694697 TACA
1 TACA
21694701 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 8 0.22
33 28 0.78
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:21699666 original size:19 final size:20
Alignment explanation
Indices: 21699618--21699666 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
21699608 ATTCATCATG
21699618 TTAA-TATTTTTAACATAAT
1 TTAATTATTTTTAACATAAT
21699637 TTAATTA-TTTTATA-AT-AT
1 TTAATTATTTTTA-ACATAAT
21699655 TTAATTATTTTT
1 TTAATTATTTTT
21699667 TGACAAGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
18 9 0.33
19 15 0.56
20 3 0.11
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (20 bp):
TTAATTATTTTTAACATAAT
Found at i:21705524 original size:27 final size:27
Alignment explanation
Indices: 21705477--21705546 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
21705467 CATTTGACAC
*
21705477 ATTTTACATCAGATTATAGAGCTTCAA
1 ATTTTACATCAGATTAGAGAGCTTCAA
** *
21705504 ATTTTACATCATTTTAGAGAGCTTTAA
1 ATTTTACATCAGATTAGAGAGCTTCAA
21705531 ATTTTACATCAAGATT
1 ATTTTACATC-AGATT
21705547 TTCAATCAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
27 33 0.92
28 3 0.08
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.41
Consensus pattern (27 bp):
ATTTTACATCAGATTAGAGAGCTTCAA
Found at i:21712682 original size:14 final size:15
Alignment explanation
Indices: 21712649--21712686 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
21712639 TAATCTAGAA
21712649 AATTTT-AAAAATAT
1 AATTTTAAAAAATAT
21712663 ATATTTTAAAAAAT-T
1 A-ATTTTAAAAAATAT
21712678 AATTTTAAA
1 AATTTTAAA
21712687 TATTAGAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 9 0.41
15 7 0.32
16 6 0.27
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AATTTTAAAAAATAT
Found at i:21713209 original size:12 final size:12
Alignment explanation
Indices: 21713188--21713224 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
21713178 TTTTTTAATA
21713188 TTTC-TTCATTT
1 TTTCATTCATTT
21713199 TTTCATTCATTT
1 TTTCATTCATTT
21713211 TTTCATTCATTT
1 TTTCATTCATTT
21713223 TT
1 TT
21713225 CCATGACACA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 4 0.16
12 21 0.84
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.70
Consensus pattern (12 bp):
TTTCATTCATTT
Found at i:21730585 original size:106 final size:104
Alignment explanation
Indices: 21730394--21730600 Score: 285
Period size: 106 Copynumber: 2.0 Consensus size: 104
21730384 GTTACTCCAT
* *
21730394 CCCTACCCTCAATATTGTATTAAAAAATTAAAAATATTATTAATGAGATCATTACTTATGGAAGA
1 CCCTACCCTCAATATTGTATTAAAAAATTAAAAATATTATTAATGAGATCATTACTAATAGAAGA
*
21730459 TATTATTAACTATTTCAACAAACTTTTATATACCAACAC
66 TATTATTAACTATTTCAACAAACTTTTACATACCAACAC
* * *
21730498 CCCTACCC-CAATATTTTA-TAAAAAATGTTACAAATTTATTATTAATGAGATCGTTA-TAAATA
1 CCCTACCCTCAATATTGTATTAAAAAA--TTA-AAA-ATATTATTAATGAGATCATTACT-AATA
*
21730560 TAAGATATTATTAACTATTTCAACAAACTTTTACATACCAA
61 GAAGATATTATTAACTATTTCAACAAACTTTTACATACCAA
21730601 TAGGTGTTCG
Statistics
Matches: 91, Mismatches: 7, Indels: 8
0.86 0.07 0.08
Matches are distributed among these distances:
102 7 0.08
103 9 0.10
104 11 0.12
105 4 0.04
106 60 0.66
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.36
Consensus pattern (104 bp):
CCCTACCCTCAATATTGTATTAAAAAATTAAAAATATTATTAATGAGATCATTACTAATAGAAGA
TATTATTAACTATTTCAACAAACTTTTACATACCAACAC
Found at i:21735851 original size:41 final size:41
Alignment explanation
Indices: 21735772--21735909 Score: 134
Period size: 41 Copynumber: 3.4 Consensus size: 41
21735762 GGCTCTGTGG
* * *** * *
21735772 CTAGAAGGCTTTATGCCGGTGAATTGTATTTGGATTTATGC
1 CTAGCAGGCTTCATGCCGGTGAACCATATCTGGCTTTATGC
*
21735813 CTAGCAGGCTTCATGCCGGTGTACCATAT-TAGGCTTTATGC
1 CTAGCAGGCTTCATGCCGGTGAACCATATCT-GGCTTTATGC
* * * *
21735854 CTAGCAGGGTTCGTGCCGGTGAATCATATCTGGCTTTGTGC
1 CTAGCAGGCTTCATGCCGGTGAACCATATCTGGCTTTATGC
* *
21735895 CAAGAAGGCTTCATG
1 CTAGCAGGCTTCATG
21735910 TTGGTGTATT
Statistics
Matches: 79, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
40 1 0.01
41 77 0.97
42 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.33
Consensus pattern (41 bp):
CTAGCAGGCTTCATGCCGGTGAACCATATCTGGCTTTATGC
Found at i:21739939 original size:41 final size:41
Alignment explanation
Indices: 21739880--21739992 Score: 140
Period size: 41 Copynumber: 2.8 Consensus size: 41
21739870 TAGATAGAGG
*
21739880 TTTATGCCTAGCAAGCTTCATGCCGGTGTA-CAATATCAGGC
1 TTTATGCCTAGCAGGCTTCATGCCGGTGTATC-ATATCAGGC
* * *
21739921 TTTATGCCTAGCAGGCTTCGTGCCGATGTATCATATCTGGC
1 TTTATGCCTAGCAGGCTTCATGCCGGTGTATCATATCAGGC
* *
21739962 TTTGTGCCTA-CAAGGCTTCATGCTGGTGTAT
1 TTTATGCCTAGC-AGGCTTCATGCCGGTGTAT
21739993 TTTAATAAGC
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
40 1 0.02
41 60 0.97
42 1 0.02
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.34
Consensus pattern (41 bp):
TTTATGCCTAGCAGGCTTCATGCCGGTGTATCATATCAGGC
Found at i:21748035 original size:18 final size:17
Alignment explanation
Indices: 21748007--21748040 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
21747997 GACAAAGAAT
21748007 CAATAAATACAAATAAA
1 CAATAAATACAAATAAA
*
21748024 CAATACAATACACATAA
1 CAATA-AATACAAATAA
21748041 GAGCAATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.65, C:0.18, G:0.00, T:0.18
Consensus pattern (17 bp):
CAATAAATACAAATAAA
Found at i:21748759 original size:3 final size:3
Alignment explanation
Indices: 21748745--21748777 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
21748735 AAACAAACCT
*
21748745 TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
21748778 AGTTAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:21750720 original size:174 final size:174
Alignment explanation
Indices: 21750514--21750881 Score: 646
Period size: 174 Copynumber: 2.1 Consensus size: 174
21750504 GTCTGCTCCG
* * *
21750514 CTGCAACCTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATC
1 CTGCAACTTCAGGGAGATAACACCTAATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATC
21750579 TATTACTTTAACCCACTCCACTACAACTTCAAGGAGATAGGATTATAGGCTTCAATCTGCTCCAC
66 TATTACTTTAACCCACTCCACTACAACTTCAAGGAGATAGGATTATAGGCTTCAATCTGCTCCAC
* *
21750644 TGCAACCTTAGGGAGATAAGATTTGCCATCTTCGATCGGTCCCA
131 TACAACCTCAGGGAGATAAGATTTGCCATCTTCGATCGGTCCCA
*
21750688 CTGCAACTTCAGGGGGATAACACCTAATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATC
1 CTGCAACTTCAGGGAGATAACACCTAATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATC
* * *
21750753 TATTACTTTAACCCACTCCACTACAACTTTAGGGAGATAGGATTATCGGCTTCAATCTGCTCCAC
66 TATTACTTTAACCCACTCCACTACAACTTCAAGGAGATAGGATTATAGGCTTCAATCTGCTCCAC
21750818 TACAACCTCAGGGAGATAAGATTTGCCATCTTCGATCGGTCCCA
131 TACAACCTCAGGGAGATAAGATTTGCCATCTTCGATCGGTCCCA
*
21750862 CTGCAACTTCAGAGAGATAA
1 CTGCAACTTCAGGGAGATAA
21750882 TATCTGTTAC
Statistics
Matches: 183, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
174 183 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (174 bp):
CTGCAACTTCAGGGAGATAACACCTAATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATC
TATTACTTTAACCCACTCCACTACAACTTCAAGGAGATAGGATTATAGGCTTCAATCTGCTCCAC
TACAACCTCAGGGAGATAAGATTTGCCATCTTCGATCGGTCCCA
Found at i:21750781 original size:44 final size:44
Alignment explanation
Indices: 21750547--21750917 Score: 132
Period size: 44 Copynumber: 8.5 Consensus size: 44
21750537 CTGATGCGAT
* * *
21750547 CCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAAC
1 CCACTCCACTACAACTTCAGAGAGATAAGATCTATTACTTCAAC
* *
21750591 CCACTCCACTACAACTTCA-AGGAGATAGGAT-TA-TAGGCTTCAAT
1 CCACTCCACTACAACTTCAGA-GAGATAAGATCTATTA--CTTCAAC
** * * * *** *
21750635 CTGCTCCACTGCAACCTT-AGGGAGATAAGATTTGCCATCTTCGA-
1 CCACTCCACTACAA-CTTCAGAGAGATAAGATCTATTA-CTTCAAC
* ** * * * * * * * *
21750679 TCGGTCCCACTGCAACTTCAGGGGGATAACACCTA--A-TGCGAT
1 CCACT-CCACTACAACTTCAGAGAGATAAGATCTATTACTTCAAC
* * *
21750721 CCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAAC
1 CCACTCCACTACAACTTCAGAGAGATAAGATCTATTACTTCAAC
* * * ** *
21750765 CCACTCCACTACAACTTTAGGGAGATAGGAT-TATCGGCTTCAAT
1 CCACTCCACTACAACTTCAGAGAGATAAGATCTAT-TACTTCAAC
** * * * *** *
21750809 CTGCTCCACTACAACCTCAGGGAGATAAGATTTGCCATCTTCGA-
1 CCACTCCACTACAACTTCAGAGAGATAAGATCTATTA-CTTCAAC
* ** * * * *
21750853 TCGGTCCCACTGCAACTTCAGAGAGATAATATCTGTTACTTTAAC
1 CCACT-CCACTACAACTTCAGAGAGATAAGATCTATTACTTCAAC
*
21750898 CCACTCAACTACAACTTCAG
1 CCACTCCACTACAACTTCAG
21750918 GTAGATAGGA
Statistics
Matches: 238, Mismatches: 71, Indels: 36
0.69 0.21 0.10
Matches are distributed among these distances:
41 28 0.12
42 4 0.02
43 8 0.03
44 135 0.57
45 62 0.26
46 1 0.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (44 bp):
CCACTCCACTACAACTTCAGAGAGATAAGATCTATTACTTCAAC
Found at i:21750877 original size:133 final size:133
Alignment explanation
Indices: 21750728--21751003 Score: 489
Period size: 133 Copynumber: 2.1 Consensus size: 133
21750718 GATCCACTCT
* *
21750728 ACTGCAACTTCAGAGAGATAAGATCTATTACTTTAACCCACTCCACTACAACTTTAGGGAGATAG
1 ACTGCAACTTCAGAGAGATAAGATCTATTACTTTAACCCACTCAACTACAACTTCAGGGAGATAG
21750793 GATTATCGGCTTCAATCTGCTCCACTACAACCTCAGGGAGATAAGATTTGCCATCTTCGATCGGT
66 GATTATCGGCTTCAATCTGCTCCACTACAACCTCAGGGAGATAAGATTTGCCATCTTCGATCGGT
21750858 CCC
131 CCC
* * *
21750861 ACTGCAACTTCAGAGAGATAATATCTGTTACTTTAACCCACTCAACTACAACTTCAGGTAGATAG
1 ACTGCAACTTCAGAGAGATAAGATCTATTACTTTAACCCACTCAACTACAACTTCAGGGAGATAG
*
21750926 GATTATCGGCTTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATCGGT
66 GATTATCGGCTTCAATCTGCTCCACTACAACCTCAGGGAGATAAGATTTGCCATCTTCGATCGGT
21750991 CCC
131 CCC
*
21750994 ACTGAAACTT
1 ACTGCAACTT
21751004 TAGGGGGATA
Statistics
Matches: 136, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
133 136 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (133 bp):
ACTGCAACTTCAGAGAGATAAGATCTATTACTTTAACCCACTCAACTACAACTTCAGGGAGATAG
GATTATCGGCTTCAATCTGCTCCACTACAACCTCAGGGAGATAAGATTTGCCATCTTCGATCGGT
CCC
Found at i:21750911 original size:307 final size:307
Alignment explanation
Indices: 21750554--21751177 Score: 1088
Period size: 307 Copynumber: 2.0 Consensus size: 307
21750544 GATCCACTCT
*
21750554 ACTGCAACTTCAGAGAGATAAGATCTATTACTTTAACCCACTCCACTACAACTTCAAGG-AGATA
1 ACTGCAACTTCAGAGAGATAAGATCTATTACTTTAACCCACTCAACTACAACTTC-AGGTAGATA
*
21750618 GGATTATAGGCTTCAATCTGCTCCACTGCAACCTTAGGGAGATAAGATTTGCCATCTTCGATCGG
65 GGATTATAGGCTTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATCGG
* * *
21750683 TCCCACTGCAACTTCAGGGGGATAACACCTAATGCGATCCACTCTACTGCAACTTCAGAGAGATA
130 TCCCACTGAAACTTCAGGGGGATAACACCTAATGCGATCCACTATACTGCAACTTCAAAGAGATA
*
21750748 AGATCTATTACTTTAACCCACTCCACTACAACTTTAGGGAGATAGGATTATCGGCTTCAATCTGC
195 AGATCTATTACTTTAACCCACTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGC
*
21750813 TCCACTACAACCTCAGGGAGATAAGATTTGCCATCTTCGATCGGTCCC
260 TCCACTACAACCTCAGGGAGATAAGATTTGCCATATTCGATCGGTCCC
* *
21750861 ACTGCAACTTCAGAGAGATAATATCTGTTACTTTAACCCACTCAACTACAACTTCAGGTAGATAG
1 ACTGCAACTTCAGAGAGATAAGATCTATTACTTTAACCCACTCAACTACAACTTCAGGTAGATAG
*
21750926 GATTATCGGCTTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATCGGT
66 GATTATAGGCTTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATCGGT
* * * *
21750991 CCCACTGAAACTTTAGGGGGATAAGACCTAATGTGATCCACTATACTGCAACTTCAAAGAGATAT
131 CCCACTGAAACTTCAGGGGGATAACACCTAATGCGATCCACTATACTGCAACTTCAAAGAGATAA
21751056 GATCTATTACTTTAACCCACTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCT
196 GATCTATTACTTTAACCCACTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCT
*
21751121 CCACTGCAACCTCAGGGAGATAAGATTTGCCATATTCGATCGGTCCC
261 CCACTACAACCTCAGGGAGATAAGATTTGCCATATTCGATCGGTCCC
*
21751168 ACTACAACTT
1 ACTGCAACTT
21751178 TAGGGGATAA
Statistics
Matches: 300, Mismatches: 16, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
306 3 0.01
307 297 0.99
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (307 bp):
ACTGCAACTTCAGAGAGATAAGATCTATTACTTTAACCCACTCAACTACAACTTCAGGTAGATAG
GATTATAGGCTTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATCGGT
CCCACTGAAACTTCAGGGGGATAACACCTAATGCGATCCACTATACTGCAACTTCAAAGAGATAA
GATCTATTACTTTAACCCACTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCT
CCACTACAACCTCAGGGAGATAAGATTTGCCATATTCGATCGGTCCC
Found at i:21751041 original size:174 final size:174
Alignment explanation
Indices: 21750861--21751543 Score: 696
Period size: 174 Copynumber: 3.9 Consensus size: 174
21750851 GATCGGTCCC
* * * *
21750861 ACTGCAACTTCAGAGAGATAATATCTGTTACTTTAACCCACTCAACTACAACTTCAGGTAGATAG
1 ACTGCAACTTCAGAGAGATAAGATCTATTACTTTAACCCACTCCACTACAACTTCAGGGAGATAG
21750926 GATTATCGGCTTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATCGGT
66 GATTATCGGCTTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATCGGT
* * *
21750991 CCCACTGAAACTTTAGGGGGATAAGACCTAATGT-GATCCACTAT
131 CCCACTGAAACCTCAGGGGGATAAGACCTAATGTAG-TCCACTCT
* *
21751035 ACTGCAACTTCAAAGAGATATGATCTATTACTTTAACCCACTCCACTACAACTTCAGGGAGATAG
1 ACTGCAACTTCAGAGAGATAAGATCTATTACTTTAACCCACTCCACTACAACTTCAGGGAGATAG
*
21751100 GATTATCGGCTTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATATTCGATCGGT
66 GATTATCGGCTTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATCGGT
* * ** * ** *
21751165 CCCACT-ACAACTTTA-GGGGATAAGACCTGCTTACTCAGTCTGCTCC
131 CCCACTGA-AACCTCAGGGGGATAAGACCT-AAT-GT-AGTCCACTCT
* * * * *
21751211 ACTGTAACCTCAGGGAGATAAGA-CT-TGT-CTTCT--CCGATCTGCCCCACTACAACCTCAGGG
1 ACTGCAACTTCAGAGAGATAAGATCTAT-TACTT-TAACCCA-CT---CCACTACAACTTCAGGG
* * * * * * * * * *
21751271 GGATA--A-GACCTGCTTACTCAGTCTGCTCCACGGCAACCTCAGGGAGATAAAACTTGTCTTC-
60 AGATAGGATTATCGGC-T--TCAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCT
* *
21751332 TC-AGTC--TACTCCACTGTAACCTCAGGGAGATAAGACCTAATGTAGTCCACTCT
122 TCGA-TCGGT-C-CCACTGAAACCTCAGGGGGATAAGACCTAATGTAGTCCACTCT
* * * *
21751385 ACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTCCAGTACAGCTTCAGGGAGATAG
1 ACTGCAACTTCAGAGAGATAAGATCTATTACTTTAACCCACTCCACTACAACTTCAGGGAGATAG
* * *
21751450 GATTATCAGCTTCAATCTGTTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTTGATCTGG
66 GATTATCGGCTTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATC-GG
* *
21751515 -CCCACTGCAACCTCAAGGGGATAAGACCT
130 TCCCACTGAAACCTCAGGGGGATAAGACCT
21751544 GCTTACTCAG
Statistics
Matches: 411, Mismatches: 66, Indels: 64
0.76 0.12 0.12
Matches are distributed among these distances:
173 72 0.18
174 203 0.49
175 18 0.04
176 47 0.11
177 71 0.17
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (174 bp):
ACTGCAACTTCAGAGAGATAAGATCTATTACTTTAACCCACTCCACTACAACTTCAGGGAGATAG
GATTATCGGCTTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATCGGT
CCCACTGAAACCTCAGGGGGATAAGACCTAATGTAGTCCACTCT
Found at i:21751231 original size:44 final size:44
Alignment explanation
Indices: 21751115--21751637 Score: 311
Period size: 44 Copynumber: 11.9 Consensus size: 44
21751105 TCGGCTTCAA
** * *
21751115 TCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATATTC-G
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTG-CTTACTCAG
* * * *
21751159 ATC-GGTCCCACTACAACTTTAGGG-GATAAGACCTGCTTACTCAG
1 -TCTGCT-CCACTGCAACCTCAGGGAGATAAGACCTGCTTACTCAG
* * *
21751203 TCTGCTCCACTGTAACCTCAGGGAGATAAGACTTGTCTT-CTCCG
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTG-CTTACTCAG
* * *
21751247 ATCTGCCCCACTACAACCTCAGGGGGATAAGACCTGCTTACTCAG
1 -TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTACTCAG
* * *
21751292 TCTGCTCCACGGCAACCTCAGGGAGATAAAACTTGTCTT-CTCAG
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTG-CTTACTCAG
* * ** *
21751336 TCTACTCCACTGTAACCTCAGGGAGATAAGACCT-AAT-GT-AG
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTACTCAG
** * * * * * * *
21751377 TCCACTCTACTGCAACTTCAGAGAGATAAGATCT-ATTACTTTAA
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTAC-TCAG
* * * * * * ** * *
21751421 TCCGCTCCAGTACAGCTTCAGGGAGATAGGA--TTATCAGCTTCAA
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTA-C-TCAG
* ** * **
21751465 TCTGTTCCACTGCAACCTCAGGGAGATAAGATTTGC-CATCTTTG
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTA-CTCAG
21751509 ATCTGGC-CCACTGCAACCTCAAGGG-GATAAGACCTGCTTACTCAG
1 -TCT-GCTCCACTGCAACCTC-AGGGAGATAAGACCTGCTTACTCAG
* * * *
21751554 TCTGCTCCACTACAACCTTAGGGAGATAAGACTTGTCTT-CTCCG
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTG-CTTACTCAG
* * *
21751598 ATCTGCCCCACTGCAACCTCAGGGGGGATAAGACTTGCTT
1 -TCTGCTCCACTGCAACCTCA-GGGAGATAAGACCTGCTT
21751638 GAAAAACTTA
Statistics
Matches: 374, Mismatches: 80, Indels: 48
0.75 0.16 0.10
Matches are distributed among these distances:
41 32 0.09
42 3 0.01
43 30 0.08
44 177 0.47
45 111 0.30
46 21 0.06
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (44 bp):
TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGCTTACTCAG
Found at i:21751266 original size:307 final size:307
Alignment explanation
Indices: 21750558--21751278 Score: 1014
Period size: 307 Copynumber: 2.3 Consensus size: 307
21750548 CACTCTACTG
* * * * * * *
21750558 CAACTTCAGAGAGATAAGATCTATTACTTTAACCCACTCCACTACAACTTCAAGGAGATAGGATT
1 CAACTTCAGAGAGATAAGACCTGTTACTTCAACCCACTCAACTACAACCTCAGGGAGATAAGATT
* * *
21750623 ATAGGCTTCAATCTGCTCCACTGCAACCTTAGGGAGATAAGATTTGCCATCTTCGATCGGTCCCA
66 ATCGGCTCCAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATCGGTCCCA
* * *
21750688 CTGCAACTTCAGGGGGATAACACCTAATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATC
131 CTGAAACTTCAGGGGGATAACACCTAATGCGATCCACTATACTGCAACTTCAAAGAGATAAGATC
*
21750753 TATTACTTTAACCCACTCCACTACAACTTTAGGGAGATAGGATTATCGGCTTCAATCTGCTCCAC
196 TATTACTTTAACCCACTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCAC
* *
21750818 TACAACCTCAGGGAGATAAGATTTGCCATCTTCGATCGGTCCCACTG
261 TACAACCTCAGGGAGATAAGATTTGCCATATTCGATCGGTCCCACTA
* * * * * *
21750865 CAACTTCAGAGAGATAATATCTGTTACTTTAACCCACTCAACTACAACTTCAGGTAGATAGGATT
1 CAACTTCAGAGAGATAAGACCTGTTACTTCAACCCACTCAACTACAACCTCAGGGAGATAAGATT
*
21750930 ATCGGCTTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATCGGTCCCA
66 ATCGGCTCCAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATCGGTCCCA
* * * *
21750995 CTGAAACTTTAGGGGGATAAGACCTAATGTGATCCACTATACTGCAACTTCAAAGAGATATGATC
131 CTGAAACTTCAGGGGGATAACACCTAATGCGATCCACTATACTGCAACTTCAAAGAGATAAGATC
21751060 TATTACTTTAACCCACTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCAC
196 TATTACTTTAACCCACTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCAC
*
21751125 TGCAACCTCAGGGAGATAAGATTTGCCATATTCGATCGGTCCCACTA
261 TACAACCTCAGGGAGATAAGATTTGCCATATTCGATCGGTCCCACTA
* * ** ** * **
21751172 CAACTTTAG-GGGATAAGACCTGCTTAC-TCAGTCTGCTCCACTGTAACCTCAGGGAGATAAGAC
1 CAACTTCAGAGAGATAAGACCTG-TTACTTCAACCCACTCAACTACAACCTCAGGGAGATAAGA-
* ** * * * *
21751235 TTGTCTTCTCCGATCTGCCCCACTACAACCTCAGGGGGATAAGA
64 TTATCGGCTCCAATCTGCTCCACTGCAACCTCAGGGAGATAAGA
21751279 CCTGCTTACT
Statistics
Matches: 371, Mismatches: 41, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
306 34 0.09
307 337 0.91
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (307 bp):
CAACTTCAGAGAGATAAGACCTGTTACTTCAACCCACTCAACTACAACCTCAGGGAGATAAGATT
ATCGGCTCCAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATCGGTCCCA
CTGAAACTTCAGGGGGATAACACCTAATGCGATCCACTATACTGCAACTTCAAAGAGATAAGATC
TATTACTTTAACCCACTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCAC
TACAACCTCAGGGAGATAAGATTTGCCATATTCGATCGGTCCCACTA
Found at i:21751277 original size:133 final size:133
Alignment explanation
Indices: 21751114--21751634 Score: 314
Period size: 133 Copynumber: 3.9 Consensus size: 133
21751104 ATCGGCTTCA
* * ** * * *
21751114 ATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATATTC-GATCGG-TCCCACTACAACT
1 ATCTGCCCCACTACAACCTCAGGGAGATAAGACCTG-CATACTCAG-TCGGCT-CCACGACAACC
* * *
21751177 TTAGGG-GATAAGACCTG-CTTACTCAGTCTGCTCCACTGTAACCTCAGGGAGATAAGACTTGTC
63 TCAGGGAGATAAAACCTGTCTT-CTCAGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGTC
21751240 TTCTCCG
127 TTCTCCG
* * * *
21751247 ATCTGCCCCACTACAACCTCAGGGGGATAAGACCTGCTTACTCAGTCTGCTCCACGGCAACCTCA
1 ATCTGCCCCACTACAACCTCAGGGAGATAAGACCTGCATACTCAGTCGGCTCCACGACAACCTCA
* ** * **
21751312 GGGAGATAAAACTTGTCTTCTCAGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTAATGTAG
66 GGGAGATAAAACCTGTCTTCTCAGTCTACTCCACTGTAACCTCAGGGAGATAAGA-CTTGTCTTC
21751377 TCC-
130 TCCG
* * * * * * * * * *
21751380 A-CT---CTACTGCAACTTCAGAGAGATAAGATCT--ATTACTTTAATCCGCTCCA-GTACAGCT
1 ATCTGCCCCACTACAACCTCAGGGAGATAAGACCTGCA-TAC-TCAGTCGGCTCCACG-ACAACC
** * * ** * ** * * *
21751438 TCAGGGAGATAGGA-TTATCAGCTTCAATCTGTTCCACTGCAACCTCAGGGAGATAAGATTTGCC
63 TCAGGGAGATAAAACCTGTCTTC-TCAGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGTC
* **
21751502 ATCTTTG
127 TTCTCCG
* * * * * *
21751509 ATCTGGCCCACTGCAACCTCAAGGG-GATAAGACCTGCTTACTCAGTCTGCTCCACTACAACCTT
1 ATCTGCCCCACTACAACCTC-AGGGAGATAAGACCTGCATACTCAGTCGGCTCCACGACAACCTC
* * * * * * *
21751573 AGGGAGATAAGACTTGTCTTCTCCGATCTGCCCCACTGCAACCTCAGGGGGGATAAGACTTG
65 AGGGAGATAAAACCTGTCTTCTCAG-TCTACTCCACTGTAACCTCA-GGGAGATAAGACTTG
21751635 CTTGAAAAAC
Statistics
Matches: 293, Mismatches: 74, Indels: 40
0.72 0.18 0.10
Matches are distributed among these distances:
128 11 0.04
129 79 0.27
130 2 0.01
132 23 0.08
133 126 0.43
134 39 0.13
135 13 0.04
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (133 bp):
ATCTGCCCCACTACAACCTCAGGGAGATAAGACCTGCATACTCAGTCGGCTCCACGACAACCTCA
GGGAGATAAAACCTGTCTTCTCAGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGTCTTCT
CCG
Found at i:21751310 original size:89 final size:89
Alignment explanation
Indices: 21751115--21751637 Score: 456
Period size: 89 Copynumber: 5.9 Consensus size: 89
21751105 TCGGCTTCAA
* * * * * * * * *
21751115 TCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATATTCGATCGGTCCCACTACAACTTTA
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGTCTTCTCCGATCTGCCCCACTACAACCTCA
21751180 -GGGGATAAGACCTGCTTACTCAG
66 GGGGGATAAGACCTGCTTACTCAG
*
21751203 TCTGCTCCACTGTAACCTCAGGGAGATAAGACTTGTCTTCTCCGATCTGCCCCACTACAACCTCA
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGTCTTCTCCGATCTGCCCCACTACAACCTCA
21751268 GGGGGATAAGACCTGCTTACTCAG
66 GGGGGATAAGACCTGCTTACTCAG
* * * * * **
21751292 TCTGCTCCACGGCAACCTCAGGGAGATAAAACTTGTCTTCTCAG-TCTACTCCACTGTAACCTCA
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGTCTTCTCCGATCTGCCCCACTACAACCTCA
* ** *
21751356 GGGAGATAAGACCT-AAT-GT-AG
66 GGGGGATAAGACCTGCTTACTCAG
** * * * * * * * * *
21751377 TCCACTCTACTGCAACTTCAGAGAGATAAGATCTAT-TACTT-T--AATCCGCTCCAGTACAGCT
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGA-CT-TGT-CTTCTCCGATCTGCCCCACTACAACC
* * ** * *
21751438 TCAGGGAGATAGGA--TTATCAGCTTCAA
63 TCAGGGGGATAAGACCTGCTTA-C-TCAG
* * * * ** * *
21751465 TCTGTTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTTGATCTGGCCCACTGCAACCTCA
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGTCTTCTCCGATCTGCCCCACTACAACCTCA
*
21751530 AGGGGATAAGACCTGCTTACTCAG
66 GGGGGATAAGACCTGCTTACTCAG
* * *
21751554 TCTGCTCCACTACAACCTTAGGGAGATAAGACTTGTCTTCTCCGATCTGCCCCACTGCAACCTCA
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGTCTTCTCCGATCTGCCCCACTACAACCTCA
*
21751619 GGGGGGATAAGACTTGCTT
66 -GGGGGATAAGACCTGCTT
21751638 GAAAAACTTA
Statistics
Matches: 341, Mismatches: 77, Indels: 32
0.76 0.17 0.07
Matches are distributed among these distances:
83 1 0.00
84 1 0.00
85 49 0.14
86 8 0.02
87 8 0.02
88 110 0.32
89 144 0.42
90 17 0.05
91 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (89 bp):
TCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGTCTTCTCCGATCTGCCCCACTACAACCTCA
GGGGGATAAGACCTGCTTACTCAG
Found at i:21751391 original size:262 final size:264
Alignment explanation
Indices: 21751123--21751631 Score: 611
Period size: 262 Copynumber: 1.9 Consensus size: 264
21751113 AATCTGCTCC
* * * *
21751123 ACTGCAACCTCAGGGAGATAAGATTTGCCA-TA-TTCGAT-CGGTCCCACTACAACTTTAGGG-G
1 ACTGCAACCTCAGAGAGATAAGA--T-CCATTACTTCAATCCGCT-CCACTACAACTTCAGGGAG
* * * * * *
21751184 ATAAGACCTGCTTA-C-TCAGTCTGCTCCACTGTAACCTCAGGGAGATAAGACTTGTCTTCTCCG
62 ATAAGA--TGATCAGCTTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGCCATCTCCG
* *
21751247 ATCTGCCCCACTACAACCTCAGGGGGATAAGACCTGCTTACTCAGTCTGCTCCACGGCAACCTCA
125 ATCTGCCCCACTACAACCTCAAGGGGATAAGACCTGCTTACTCAGTCTGCTCCACGACAACCTCA
* *
21751312 GGGAGATAAAACTTGTCTTCTCAG-TCTACTCCACTGTAACCTCA-GGGAGATAAGACCTAATGT
190 GGGAGATAAAACTTGTCTTCTCAGATCTACCCCACTGCAACCTCAGGGGAGATAAGACCTAATGT
21751375 AGTCCACTCT
255 AGTCCACTCT
* * * * * *
21751385 ACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTCCAGTACAGCTTCAGGGAGATAG
1 ACTGCAACCTCAGAGAGATAAGATCCATTACTTCAATCCGCTCCACTACAACTTCAGGGAGATAA
* * * ** *
21751450 GATTATCAGCTTCAATCTGTTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTTGATCTGG
66 GATGATCAGCTTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGCCATCTCCGATCTGC
* * *
21751515 CCCACTGCAACCTCAAGGGGATAAGACCTGCTTACTCAGTCTGCTCCACTACAACCTTAGGGAGA
131 CCCACTACAACCTCAAGGGGATAAGACCTGCTTACTCAGTCTGCTCCACGACAACCTCAGGGAGA
* * * *
21751580 TAAGACTTGTCTTCTCCGATCTGCCCCACTGCAACCTCAGGGGGGATAAGAC
196 TAAAACTTGTCTTCTCAGATCTACCCCACTGCAACCTCAGGGGAGATAAGAC
21751632 TTGCTTGAAA
Statistics
Matches: 206, Mismatches: 33, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
259 2 0.01
260 6 0.03
261 19 0.09
262 151 0.73
263 17 0.08
264 11 0.05
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (264 bp):
ACTGCAACCTCAGAGAGATAAGATCCATTACTTCAATCCGCTCCACTACAACTTCAGGGAGATAA
GATGATCAGCTTCAATCTGCTCCACTGCAACCTCAGGGAGATAAGACTTGCCATCTCCGATCTGC
CCCACTACAACCTCAAGGGGATAAGACCTGCTTACTCAGTCTGCTCCACGACAACCTCAGGGAGA
TAAAACTTGTCTTCTCAGATCTACCCCACTGCAACCTCAGGGGAGATAAGACCTAATGTAGTCCA
CTCT
Found at i:21751442 original size:350 final size:352
Alignment explanation
Indices: 21751005--21751637 Score: 1040
Period size: 350 Copynumber: 1.8 Consensus size: 352
21750995 CTGAAACTTT
* *
21751005 AGGGGGATAAGACCTAATGTGATCCACTATACTGCAACTTCAAAGAGATATGATCTATTACTTTA
1 AGGGAGATAAGACCTAATGTGATCCACTATACTGCAACTTCAAAGAGATAAGATCTATTACTTTA
*
21751070 ACCCACTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGCAACCTCA
66 ACCCACTCCACTACAACTTCAGGGAGATAGGATTATCAGCTTCAATCTGCTCCACTGCAACCTCA
**
21751135 GGGAGATAAGATTTGCCATATTCGATC-GGTCCCACTACAA-CTTTAGGGGATAAGACCTGCTTA
131 GGGAGATAAGATTTGCCATATTCGATCTGG-CCCACTACAACCTCAAGGGGATAAGACCTGCTTA
**
21751198 CTCAGTCTGCTCCACTGTAACCTCAGGGAGATAAGACTTGTCTTCTCCGATCTGCCCCACTACAA
195 CTCAGTCTGCTCCACTACAACCTCAGGGAGATAAGACTTGTCTTCTCCGATCTGCCCCACTACAA
21751263 CCTCA-GGGGGATAAGACCTGCTTACTCAGTCTGCTCCACGGCAACCTCAGGGAGATAAAACTTG
260 CCTCAGGGGGGATAAGACCTGCTTACTCAGTCTGCTCCACGGCAACCTCAGGGAGATAAAACTTG
21751327 TCTTCTCAGTCTACTCCACTGTAACCTC
325 TCTTCTCAGTCTACTCCACTGTAACCTC
* *
21751355 AGGGAGATAAGACCTAATGT-AGTCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTT
1 AGGGAGATAAGACCTAATGTGA-TCCACTATACTGCAACTTCAAAGAGATAAGATCTATTACTTT
* * * * *
21751419 AATCCGCTCCAGTACAGCTTCAGGGAGATAGGATTATCAGCTTCAATCTGTTCCACTGCAACCTC
65 AACCCACTCCACTACAACTTCAGGGAGATAGGATTATCAGCTTCAATCTGCTCCACTGCAACCTC
* * *
21751484 AGGGAGATAAGATTTGCCATCTTTGATCTGGCCCACTGCAACCTCAAGGGGATAAGACCTGCTTA
130 AGGGAGATAAGATTTGCCATATTCGATCTGGCCCACTACAACCTCAAGGGGATAAGACCTGCTTA
* *
21751549 CTCAGTCTGCTCCACTACAACCTTAGGGAGATAAGACTTGTCTTCTCCGATCTGCCCCACTGCAA
195 CTCAGTCTGCTCCACTACAACCTCAGGGAGATAAGACTTGTCTTCTCCGATCTGCCCCACTACAA
*
21751614 CCTCAGGGGGGATAAGACTTGCTT
260 CCTCAGGGGGGATAAGACCTGCTT
21751638 GAAAAACTTA
Statistics
Matches: 259, Mismatches: 20, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
349 1 0.00
350 152 0.59
351 89 0.34
352 17 0.07
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (352 bp):
AGGGAGATAAGACCTAATGTGATCCACTATACTGCAACTTCAAAGAGATAAGATCTATTACTTTA
ACCCACTCCACTACAACTTCAGGGAGATAGGATTATCAGCTTCAATCTGCTCCACTGCAACCTCA
GGGAGATAAGATTTGCCATATTCGATCTGGCCCACTACAACCTCAAGGGGATAAGACCTGCTTAC
TCAGTCTGCTCCACTACAACCTCAGGGAGATAAGACTTGTCTTCTCCGATCTGCCCCACTACAAC
CTCAGGGGGGATAAGACCTGCTTACTCAGTCTGCTCCACGGCAACCTCAGGGAGATAAAACTTGT
CTTCTCAGTCTACTCCACTGTAACCTC
Found at i:21752859 original size:8 final size:8
Alignment explanation
Indices: 21752848--21752898 Score: 54
Period size: 8 Copynumber: 6.4 Consensus size: 8
21752838 CCATTTTTAC
21752848 TTTTTCAT
1 TTTTTCAT
21752856 TTTTTCA-
1 TTTTTCAT
21752863 TTTTTCA-
1 TTTTTCAT
21752870 -TTTTCAT
1 TTTTTCAT
21752877 TTTTCATCATT
1 TTTT--TCA-T
21752888 TTTTTCAT
1 TTTTTCAT
21752896 TTT
1 TTT
21752899 GACTCAAAGT
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
6 6 0.16
7 7 0.18
8 14 0.37
9 3 0.08
10 3 0.08
11 5 0.13
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.73
Consensus pattern (8 bp):
TTTTTCAT
Found at i:21752866 original size:15 final size:15
Alignment explanation
Indices: 21752839--21752883 Score: 60
Period size: 13 Copynumber: 3.2 Consensus size: 15
21752829 TTAGCCTCTC
*
21752839 CATTTTTAC-TTTTT
1 CATTTTTTCATTTTT
21752853 CATTTTTTCATTTTT
1 CATTTTTTCATTTTT
21752868 CA--TTTTCATTTTT
1 CATTTTTTCATTTTT
21752881 CAT
1 CAT
21752884 CATTTTTTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 13 0.46
14 8 0.29
15 7 0.25
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.69
Consensus pattern (15 bp):
CATTTTTTCATTTTT
Found at i:21752898 original size:7 final size:7
Alignment explanation
Indices: 21752839--21752883 Score: 58
Period size: 7 Copynumber: 6.4 Consensus size: 7
21752829 TTAGCCTCTC
21752839 CATTTTT
1 CATTTTT
21752846 -ACTTTTT
1 CA-TTTTT
21752853 CATTTTTT
1 CA-TTTTT
21752861 CATTTTT
1 CATTTTT
21752868 CA-TTTT
1 CATTTTT
21752874 CATTTTT
1 CATTTTT
21752881 CAT
1 CAT
21752884 CATTTTTTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
6 7 0.21
7 19 0.56
8 8 0.24
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.69
Consensus pattern (7 bp):
CATTTTT
Done.