Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 77 of 221
Found at i:22516965 original size:102 final size:105
Alignment explanation
Indices: 22516724--22517165 Score: 274
Period size: 110 Copynumber: 4.1 Consensus size: 105
22516714 AATTTTTTAG
* * * * * ** * *
22516724 GTTGCCTTGGAAAAGGTCTATCCC-AACCTTTTAAGGTTGCTTTAAACAAGTCTATCCCAACATT
1 GTTGCCTTAGACAATGTCTATCCCAAACTTTTTAAGGTTACCATAGAGAAGTCTATCCCAACATT
22516788 TTTAAGGTTGTCTTAGACGGGTCGATCCAAACCTTTTTTAAAA
66 TTTAAGGTTGTCTTAGAC--GTC-ATCCAAACCTTTTTTAAAA
* * *
22516831 GTTGCCTTAGACAATGTCTATCCCAACCTTTTTAAGGTTACCATAGAGAAGTCTATCCCTACCTT
1 GTTGCCTTAGACAATGTCTATCCCAAACTTTTTAAGGTTACCATAGAGAAGTCTATCCCAACATT
* * * *
22516896 TTTAAGGTTGTTTTAG-C-T-ATCCTAACCTTTTTTGAAG
66 TTTAAGGTTGTCTTAGACGTCATCCAAACCTTTTTTAAAA
* * * * ***
22516933 GTTTCCTTAGACAATGTCTATCCCAAATTTTTTAAAAGGTTGCCTTAGACTGGTCTATCCCAACC
1 GTTGCCTTAGACAATGTCTATCCCAAACTTTTT--AAGGTTACCATAGAGAAGTCTATCCCAA-C
* * * * * *
22516998 TTTTTTAAAGGTGGCCTTAGACAAGGTCTACCCCAAA--ATTTTT-AAG
63 ATTTTT-AAGGTTGTCTTAGAC---GTC-A-TCCAAACCTTTTTTAAAA
* * * * * * *
22517044 GTTGCCTTAGACGAT-TCTATCCCAATCTTTTTTAAAGGTTGCCTTAGACATGGTCTATCCCTAC
1 GTTGCCTTAGACAATGTCTATCCCAAAC-TTTTT-AAGGTTACCATAGAGA-AGTCTATCCCAAC
* * * *
22517108 TTTTTTAAAAGGTTATCTTAGACTGGTCTATCCCAACC-TTTTT-AAG
63 ATTTTT--AAGGTTGTCTTAGAC--GTC-ATCCAAACCTTTTTTAAAA
22517154 GTTGCCTTAGAC
1 GTTGCCTTAGAC
22517166 GGGTTTATCC
Statistics
Matches: 273, Mismatches: 44, Indels: 33
0.78 0.13 0.09
Matches are distributed among these distances:
102 46 0.17
104 23 0.08
105 6 0.02
106 10 0.04
107 23 0.08
108 46 0.17
109 4 0.01
110 59 0.22
111 46 0.17
112 5 0.02
113 1 0.00
114 4 0.01
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (105 bp):
GTTGCCTTAGACAATGTCTATCCCAAACTTTTTAAGGTTACCATAGAGAAGTCTATCCCAACATT
TTTAAGGTTGTCTTAGACGTCATCCAAACCTTTTTTAAAA
Found at i:22517211 original size:148 final size:148
Alignment explanation
Indices: 22516912--22517253 Score: 381
Period size: 148 Copynumber: 2.3 Consensus size: 148
22516902 GTTGTTTTAG
* * * *
22516912 CTATCCTAACCTTTTTTGAAGGTTTCCTTAGACAATGTCTATCCCAAATTTTTTAAAAGGTTGCC
1 CTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAATGTCTATCCCAAATTTTTTAAAAGGTTACC
22516977 TTAGACTGGTCTATCCCAACCTTTTTTAAAGGTGGCCTTAGACAAGGTCTACCCCAAAATTTTTA
66 TTAGACTGGTCTATCCCAACCTTTTTTAAAGGTGGCCTTAGACAAGGTCTACCCCAAAATTTTTA
* * *
22517042 AGGTTGCCTTAGACGATT
131 AAGTTGCATTAGACGAGT
* * * *
22517060 CTATCCCAATCTTTTTTAAAGGTTGCCTTAGAC-ATGGTCTATCCCTACTTTTTTAAAAGGTTAT
1 CTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAT-GTCTATCCCAAATTTTTTAAAAGGTTAC
* * * * * **
22517124 CTTAGACTGGTCTATCCCAACC-TTTTT-AAGGTTGCCTTAGAC-GGGTTTATCCTAACCTTTTT
65 CTTAGACTGGTCTATCCCAACCTTTTTTAAAGGTGGCCTTAGACAAGGTCTACCCCAAAATTTTT
*
22517186 CAAAAGTTGGCATT-GACTAGGT
130 --AAAGTT-GCATTAGACGA-GT
* * * * *
22517208 CTATCCCAACCATTTTTAAAGGTGGCCTT-GACTAGGTCTTTCCCAA
1 CTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAATGTCTATCCCAA
22517254 CCTTTCAATA
Statistics
Matches: 163, Mismatches: 25, Indels: 13
0.81 0.12 0.06
Matches are distributed among these distances:
145 14 0.09
146 14 0.09
147 28 0.17
148 107 0.66
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (148 bp):
CTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAATGTCTATCCCAAATTTTTTAAAAGGTTACC
TTAGACTGGTCTATCCCAACCTTTTTTAAAGGTGGCCTTAGACAAGGTCTACCCCAAAATTTTTA
AAGTTGCATTAGACGAGT
Found at i:22517252 original size:110 final size:111
Alignment explanation
Indices: 22516912--22517258 Score: 368
Period size: 110 Copynumber: 3.1 Consensus size: 111
22516902 GTTGTTTTAG
* * * * *
22516912 CTATCCTAACCTTTTTTGAAGGTTTCCTTAGACAATGTCTATCCCAA-ATTTTTTAAAAGGTTGC
1 CTATCCCAACC-TTTTT-AAGGTTGCCTTAGACGAT-TCTATCCCAACCTTTTTCAAAA-GTTGC
* *
22516976 CTTAGACT-GGTCTATCCCAACCTTTTTTAAAGGTGGCCTTAGACAAGGT
62 ATTAGACTAGGTCTATCCCAACCTTTTTTAAAGGTGGCCTTAGACTAGGT
* ** * * * *
22517025 CTACCCCAAAATTTTTAAGGTTGCCTTAGACGATTCTATCCCAATCTTTTTTAAAGGTTGCCTTA
1 CTATCCCAACCTTTTTAAGGTTGCCTTAGACGATTCTATCCCAACCTTTTTCAAAAGTTGCATTA
* ***
22517090 GAC-ATGGTCTATCCCTA-CTTTTTTAAAAGGTTATCTTAGACT-GGT
66 GACTA-GGTCTATCCCAACCTTTTTT-AAAGGTGGCCTTAGACTAGGT
* *
22517135 CTATCCCAACCTTTTTAAGGTTGCCTTAGACGGGTT-TATCCTAACCTTTTTCAAAAGTTGGCAT
1 CTATCCCAACCTTTTTAAGGTTGCCTTAGAC-GATTCTATCCCAACCTTTTTCAAAAGTT-GCAT
*
22517199 T-GACTAGGTCTATCCCAACCATTTTTAAAGGTGGCCTT-GACTAGGT
64 TAGACTAGGTCTATCCCAACCTTTTTTAAAGGTGGCCTTAGACTAGGT
*
22517245 CTTTCCCAACCTTT
1 CTATCCCAACCTTT
22517259 CAATAAAGGT
Statistics
Matches: 197, Mismatches: 28, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
109 4 0.02
110 118 0.60
111 63 0.32
112 5 0.03
113 7 0.04
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.37
Consensus pattern (111 bp):
CTATCCCAACCTTTTTAAGGTTGCCTTAGACGATTCTATCCCAACCTTTTTCAAAAGTTGCATTA
GACTAGGTCTATCCCAACCTTTTTTAAAGGTGGCCTTAGACTAGGT
Found at i:22519121 original size:13 final size:13
Alignment explanation
Indices: 22519105--22519134 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
22519095 TTTTTATCTT
*
22519105 TTAATTTTCTTAG
1 TTAATTTACTTAG
22519118 TTAATTTACTTAG
1 TTAATTTACTTAG
22519131 TTAA
1 TTAA
22519135 AATCTAGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (13 bp):
TTAATTTACTTAG
Found at i:22519573 original size:21 final size:20
Alignment explanation
Indices: 22519536--22519574 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
22519526 TTTAATAACA
**
22519536 CACCAAAATTGTGGACAAGC
1 CACCAAAATTGCAGACAAGC
22519556 CACCAAATATTGCAGACAA
1 CACCAAA-ATTGCAGACAA
22519575 TCTGCCAGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.44, C:0.26, G:0.15, T:0.15
Consensus pattern (20 bp):
CACCAAAATTGCAGACAAGC
Found at i:22537179 original size:120 final size:120
Alignment explanation
Indices: 22536964--22537187 Score: 396
Period size: 120 Copynumber: 1.9 Consensus size: 120
22536954 TGAATGGTCT
* *
22536964 CATTTAGTTTGGAACGCATTTGTCGGGCCTTTGATCTCGTTATTGGGCCTTGTGGTAGTTTGAGC
1 CATTTAGTTTGGAACACATTTGTCGGGCCTTTGATCTCGTTATTGGGCCTTGTGGTAATTTGAGC
*
22537029 CCATCACGTTCTTGGGCTTGGGTTCAGCCTTTGTGACTCATATAATTCCTAGTCC
66 CCATCACATTCTTGGGCTTGGGTTCAGCCTTTGTGACTCATATAATTCCTAGTCC
*
22537084 CATTTAGTTTGGAACACATTTTTCGGGCCTTTGATCTCGTTATTGGGCCTTGTGGTAATTTGAGC
1 CATTTAGTTTGGAACACATTTGTCGGGCCTTTGATCTCGTTATTGGGCCTTGTGGTAATTTGAGC
22537149 CCATCACATTCTTGGGCTTGGGTT-AGGCCTTTGTGACTC
66 CCATCACATTCTTGGGCTTGGGTTCA-GCCTTTGTGACTC
22537188 GTATCAAAGG
Statistics
Matches: 99, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
119 1 0.01
120 98 0.99
ACGTcount: A:0.15, C:0.21, G:0.25, T:0.39
Consensus pattern (120 bp):
CATTTAGTTTGGAACACATTTGTCGGGCCTTTGATCTCGTTATTGGGCCTTGTGGTAATTTGAGC
CCATCACATTCTTGGGCTTGGGTTCAGCCTTTGTGACTCATATAATTCCTAGTCC
Found at i:22545519 original size:23 final size:23
Alignment explanation
Indices: 22545489--22545536 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
22545479 TGTATGATTG
*
22545489 CTTATGTTTCAGTCCGGTAATGC
1 CTTATGTTTCAGTCCGATAATGC
22545512 CTTATGTTTCAGTCCGATAATGC
1 CTTATGTTTCAGTCCGATAATGC
22545535 CT
1 CT
22545537 CGTACCTTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.40
Consensus pattern (23 bp):
CTTATGTTTCAGTCCGATAATGC
Found at i:22551892 original size:51 final size:50
Alignment explanation
Indices: 22551772--22551959 Score: 243
Period size: 51 Copynumber: 3.7 Consensus size: 50
22551762 TATCATTCGA
* * *
22551772 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAACTTTCCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAACCTTCCGG
* *
22551822 TTCATGTAGTAGCCTGCACATAGTACTACACACGTGACCAAAGCCTTCCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAA-CCTTCCGG
* * * * *
22551873 TACACATAGTAGCCTGCACATAGTACTACACATGTGACCATTATCTAT-CGA
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA-AACCT-TCCGG
*
22551924 TACACGTAGTAGCCTGCACTTAGTACTACACACGTG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTG
22551960 TTTATAGGCA
Statistics
Matches: 120, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
50 38 0.32
51 80 0.67
52 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (50 bp):
TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAACCTTCCGG
Found at i:22559545 original size:51 final size:51
Alignment explanation
Indices: 22559407--22559555 Score: 169
Period size: 50 Copynumber: 2.9 Consensus size: 51
22559397 CCGTGTAATT
* *
22559407 ATTATC-ATTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATC
1 ATTATCTA-TCGATACACGTAGTAGCCTACACATAGTACTACACACGTGACC
* * * * * *
22559458 A--AACTTTCCGGTTCATGTAGTAGCCTACACATAGTACTACACATGTGACC
1 ATTATCTAT-CGATACACGTAGTAGCCTACACATAGTACTACACACGTGACC
* *
22559508 ATTATCTATCGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
1 ATTATCTATCGATACACGTAGTAGCCTACACATAGTACTACACACGTG
22559556 TTTATAGGCA
Statistics
Matches: 78, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
49 3 0.04
50 37 0.47
51 34 0.44
52 4 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (51 bp):
ATTATCTATCGATACACGTAGTAGCCTACACATAGTACTACACACGTGACC
Found at i:22571726 original size:27 final size:27
Alignment explanation
Indices: 22571696--22571873 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
22571686 ATATTGAGCC
* *
22571696 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
22571723 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
22571750 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
22571778 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
22571805 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
22571832 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
22571859 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22571874 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:22571808 original size:55 final size:54
Alignment explanation
Indices: 22571696--22571873 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
22571686 ATATTGAGCC
* * * * *
22571696 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
22571750 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
22571805 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
22571859 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22571874 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:22579733 original size:27 final size:27
Alignment explanation
Indices: 22579703--22579880 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
22579693 ATATTGAGCC
* *
22579703 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
22579730 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
22579757 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
22579785 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
22579812 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
22579839 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
22579866 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22579881 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:22579815 original size:55 final size:54
Alignment explanation
Indices: 22579703--22579880 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
22579693 ATATTGAGCC
* * * * *
22579703 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
22579757 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
22579812 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
22579866 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22579881 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:22581683 original size:21 final size:20
Alignment explanation
Indices: 22581615--22581682 Score: 95
Period size: 21 Copynumber: 3.4 Consensus size: 20
22581605 ATAAAGTTTG
22581615 GAATTTTT-ATAAA-TATTTT
1 GAATTTTTGA-AAATTATTTT
*
22581634 AAATTTTTGAAAATTATTTTT
1 GAATTTTTGAAAATTA-TTTT
22581655 GAATTTTTGAAAATTATTTT
1 GAATTTTTGAAAATTATTTT
22581675 GAATTTTT
1 GAATTTTT
22581683 TTTTTTTGGA
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
19 10 0.23
20 15 0.34
21 19 0.43
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (20 bp):
GAATTTTTGAAAATTATTTT
Found at i:22589758 original size:14 final size:14
Alignment explanation
Indices: 22589736--22589775 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
22589726 TTCTTTCTTT
22589736 TTCTATCAATTCTA
1 TTCTATCAATTCTA
*
22589750 TTCTCTCAATTCTA
1 TTCTATCAATTCTA
*
22589764 TTC-ATCTATTCT
1 TTCTATCAATTCT
22589776 CTCAATTATC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
13 7 0.30
14 16 0.70
ACGTcount: A:0.23, C:0.25, G:0.00, T:0.53
Consensus pattern (14 bp):
TTCTATCAATTCTA
Found at i:22592682 original size:21 final size:22
Alignment explanation
Indices: 22592653--22592699 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
22592643 CAGAAGGAGT
*
22592653 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
22592675 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
22592696 GAGT
1 GAGT
22592700 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:22595037 original size:42 final size:43
Alignment explanation
Indices: 22594985--22595065 Score: 119
Period size: 42 Copynumber: 1.9 Consensus size: 43
22594975 TTTTGATTTA
* *
22594985 CGTGTAAGACCATGTCTGGGACATTAGCATCG-TATATGTGTT
1 CGTGTAAGACCATATCTGGGACAGTAGCATCGATATATGTGTT
* *
22595027 CGTGTAAGACCCTATCTGGGACAGTGGCATCGATATATG
1 CGTGTAAGACCATATCTGGGACAGTAGCATCGATATATG
22595066 ATTACATGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
42 28 0.82
43 6 0.18
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCATATCTGGGACAGTAGCATCGATATATGTGTT
Found at i:22595925 original size:30 final size:30
Alignment explanation
Indices: 22595889--22595945 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
22595879 TTCCCGAGCC
22595889 TAGGGGCAAAACTGTAAATATGCAAAAGTT
1 TAGGGGCAAAACTGTAAATATGCAAAAGTT
* * *
22595919 TAGGGGCAAAATTGTAATTTTGCAAAA
1 TAGGGGCAAAACTGTAAATATGCAAAA
22595946 TTTTGAGTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.42, C:0.09, G:0.23, T:0.26
Consensus pattern (30 bp):
TAGGGGCAAAACTGTAAATATGCAAAAGTT
Found at i:22596763 original size:64 final size:64
Alignment explanation
Indices: 22596684--22596867 Score: 212
Period size: 67 Copynumber: 2.8 Consensus size: 64
22596674 AGACATTATG
* * *
22596684 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
22596748 ATGTAGCTAGGTCGCATGGGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
22596813 AA
63 AA
* * *
22596815 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
22596868 CGAACTATAT
Statistics
Matches: 101, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 26 0.26
66 22 0.22
67 33 0.33
ACGTcount: A:0.29, C:0.16, G:0.32, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:22607403 original size:43 final size:43
Alignment explanation
Indices: 22607290--22607404 Score: 101
Period size: 44 Copynumber: 2.6 Consensus size: 43
22607280 TGTGTTATCG
* ***
22607290 TGTAAGACCACGTCTGGGACGTTGGCATCGACTTCTGTTTTTTG
1 TGTAAGA-CACGTCTGGGACGTTGGCATCGACTTCTGTATTACA
* * *
22607334 TGTAAGACCCTGTCTGGGATAG-TGGCATCGA-TATTTG-ATTACA
1 TGTAAGACAC-GTCTGGGA-CGTTGGCATCGACT-TCTGTATTACA
22607377 TGTAAGACTACGTCTGGGACGTTGGCAT
1 TGTAAGAC-ACGTCTGGGACGTTGGCAT
22607405 TGTACGAGCT
Statistics
Matches: 57, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
42 1 0.02
43 27 0.47
44 28 0.49
45 1 0.02
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (43 bp):
TGTAAGACACGTCTGGGACGTTGGCATCGACTTCTGTATTACA
Found at i:22608542 original size:29 final size:28
Alignment explanation
Indices: 22608498--22608587 Score: 126
Period size: 29 Copynumber: 3.1 Consensus size: 28
22608488 TGAGCATGAC
* *
22608498 TATAAATGTGAATTGGGCTTGATGGGCCA
1 TATAAATGTG-ATTGGGCCTAATGGGCCA
22608527 TATAAATGTGATTTGGGCCTAATGGGCCA
1 TATAAATGTGA-TTGGGCCTAATGGGCCA
* *
22608556 TATAAATGTGATTGGGCCTAGTGGGCTA
1 TATAAATGTGATTGGGCCTAATGGGCCA
22608584 TATA
1 TATA
22608588 CAGGTATGTG
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
28 20 0.36
29 36 0.64
ACGTcount: A:0.28, C:0.11, G:0.29, T:0.32
Consensus pattern (28 bp):
TATAAATGTGATTGGGCCTAATGGGCCA
Found at i:22612181 original size:27 final size:27
Alignment explanation
Indices: 22612150--22612517 Score: 357
Period size: 27 Copynumber: 13.7 Consensus size: 27
22612140 TTAGTTTACC
* ** *
22612150 AAATTACCAAAGTACCCCCGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * * *
22612177 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
** * *
22612204 AAATTACTGAAATACCGTT-GATTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
22612230 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * * * *
22612257 AAATTATCGAAATA-CCATCGATTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * **
22612283 AAATTACTAAAAT-GCCTTCAATTTGTA
1 AAATTACCAAAATACCCTT-GGTTTGTA
* **
22612310 AAATTACCAAAATACCTTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
22612337 AAGTTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
**
22612364 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
22612391 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
**
22612418 AAATTACCAAAATA-CCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
22612444 AAGTTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
22612471 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
22612498 AAATTACCAAAATACCCTTG
1 AAATTACCAAAATACCCTTG
22612518 TAGGGTAGAA
Statistics
Matches: 271, Mismatches: 65, Indels: 10
0.78 0.19 0.03
Matches are distributed among these distances:
26 63 0.23
27 205 0.76
28 3 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:22612270 original size:80 final size:79
Alignment explanation
Indices: 22612150--22612513 Score: 349
Period size: 80 Copynumber: 4.5 Consensus size: 79
22612140 TTAGTTTACC
* * * * **
22612150 AAATTACCAAAGTACCCCCGGTTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTACTGAA
1 AAATTACCAAAATACCCTCGGTTTGTAAAATTACCAAAATA-CCTCGATTTGTAAAATTACCAAA
*
22612215 ATACCGTTGATTGTA
65 ATACCCTTGATTGTA
* * * * *
22612230 AAATTACTAAAATACCCTCGATTTGTAAAATTATCGAAATACCATCGA-TTGTAAAATTACTAAA
1 AAATTACCAAAATACCCTCGGTTTGTAAAATTACCAAAATACC-TCGATTTGTAAAATTACCAAA
* *
22612294 AT-GCCTTCAATTTGTA
65 ATACCCTT-GA-TTGTA
* * ** * * *
22612310 AAATTACCAAAATACCTTTGGTTTACAAAGTTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCTCGGTTTGTAAAATTACCAAAATACCTCGA-TTTGTAAAATTACCAAA
*
22612375 ATACCCTTGGTT-TACA
65 ATACCCTTGATTGT--A
* * ** *
22612391 AAATTACCAAAATACCC-CTGGTTTGTAAAATTACCAAAATACCTTGGTTTACAAAGTTACCAAA
1 AAATTACCAAAATACCCTC-GGTTTGTAAAATTACCAAAATACCTCGATTTGTAAAATTACCAAA
* *
22612455 ATACCCCTAGTTTGTA
65 ATA-CCCTTGATTGTA
*
22612471 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACC
1 AAATTACCAAAATACCCTCGGTTTGTAAAATTACCAAAATACC
22612514 CTTGTAGGGT
Statistics
Matches: 231, Mismatches: 41, Indels: 24
0.78 0.14 0.08
Matches are distributed among these distances:
78 3 0.01
79 23 0.10
80 138 0.60
81 62 0.27
82 5 0.02
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (79 bp):
AAATTACCAAAATACCCTCGGTTTGTAAAATTACCAAAATACCTCGATTTGTAAAATTACCAAAA
TACCCTTGATTGTA
Found at i:22612529 original size:27 final size:27
Alignment explanation
Indices: 22612472--22612641 Score: 180
Period size: 27 Copynumber: 6.3 Consensus size: 27
22612462 TAGTTTGTAA
** *
22612472 AATTACCAAAATACCCTTGGT-TTGTAA
1 AATTACCAAAATACCCTT-GTAGGGTAG
22612499 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCTTGTAGGGTAG
* *
22612526 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCTTGTAGGGTAG
*
22612553 AATCACCAAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCTTGTAGGGTAG
* * * *
22612580 AAATACCGAAATACCCCTGTAGGATAG
1 AATTACCAAAATACCCTTGTAGGGTAG
* * * * * *
22612607 AATTATCGAGATAACCTTGTGGGGTAA
1 AATTACCAAAATACCCTTGTAGGGTAG
22612634 AATTACCA
1 AATTACCA
22612642 TTTTGCCCCT
Statistics
Matches: 119, Mismatches: 23, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
26 2 0.02
27 117 0.98
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.25
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGTAGGGTAG
Found at i:22612530 original size:107 final size:108
Alignment explanation
Indices: 22612307--22612540 Score: 382
Period size: 107 Copynumber: 2.2 Consensus size: 108
22612297 CCTTCAATTT
22612307 GTAAAATTACCAAAATACCTTTGGTTTACAAAGTTACCAAAATACCCCTAGTTTGTAAAATTACC
1 GTAAAATTACCAAAATACCTTTGGTTTACAAAGTTACCAAAATACCCCTAGTTTGTAAAATTACC
**
22612372 AAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTT
66 AAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTGG
22612415 GTAAAATTACCAAAATACC-TTGGTTTACAAAGTTACCAAAATACCCCTAGTTTGTAAAATTACC
1 GTAAAATTACCAAAATACCTTTGGTTTACAAAGTTACCAAAATACCCCTAGTTTGTAAAATTACC
** *
22612479 AAAATACCCTTGGTTTGTAAAATTACCAAAATA-CCCTTGTAGG
66 AAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGT-GG
* *
22612522 GTAGAATTACCGAAATACC
1 GTAAAATTACCAAAATACC
22612541 CCTGTAGGGT
Statistics
Matches: 118, Mismatches: 7, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
106 6 0.05
107 93 0.79
108 19 0.16
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (108 bp):
GTAAAATTACCAAAATACCTTTGGTTTACAAAGTTACCAAAATACCCCTAGTTTGTAAAATTACC
AAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTGG
Found at i:22612541 original size:54 final size:54
Alignment explanation
Indices: 22612150--22612514 Score: 377
Period size: 53 Copynumber: 6.8 Consensus size: 54
22612140 TTAGTTTACC
* ** * * * *
22612150 AAATTACCAAAGTACCCCCGGTTTATAAAATTACCCAAATA-TCCTCGATTTGTA
1 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAG-TTTGTA
** * * * *
22612204 AAATTACTGAAATACCGTTGATTGT--AAAATTACTAAAATA-CCCTCGATTTGTA
1 AAATTACCAAAATACCCTTGGTT-TACAAAATTACCAAAATACCCCTAG-TTTGTA
* * * * * * * * *
22612257 AAATTATCGAAATACCATCGATTGT--AAAATTACTAAAAT-GCCTTCAATTTGTA
1 AAATTACCAAAATACCCTTGGTT-TACAAAATTACCAAAATACCCCT-AGTTTGTA
* *
22612310 AAATTACCAAAATACCTTTGGTTTACAAAGTTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTA
*
22612364 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTA
*
22612418 AAATTACCAAAATA-CCTTGGTTTACAAAGTTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTA
**
22612471 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCC
1 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCC
22612515 TTGTAGGGTA
Statistics
Matches: 269, Mismatches: 35, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
52 1 0.00
53 138 0.51
54 126 0.47
55 4 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTA
Found at i:22612567 original size:81 final size:81
Alignment explanation
Indices: 22612307--22612611 Score: 237
Period size: 81 Copynumber: 3.8 Consensus size: 81
22612297 CCTTCAATTT
* * ** * * ** *
22612307 GTAAAATTACCAAAATACCTTTGGTTTACAAAGTTACCAAAATACCCCTAGTTTG-TAAAATTAC
1 GTAAAATCACCAAAATACCCTTGGTTTGTAAAATTACCAAAATA-CCCTTGTAGGATAGAATTAC
* * **
22612371 CAAAATACCCTTGGTTT
65 CAAAATACCCCTAGTGG
** * * ** *
22612388 ACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATA-CCTTG--GTTTACAAAGTTA
1 GTAAAATCACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGTAGGATA-GAA-TTA
**
22612450 CCAAAATACCCCTAGTTT
64 CCAAAATACCCCTAGTGG
* *
22612468 GTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGTAGGGTAGAATTACC
1 GTAAAATCACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGTAGGATAGAATTACC
*
22612533 GAAATACCCCT-GTAGG
66 AAAATACCCCTAGT-GG
* ** * *
22612549 GTAGAATCACCAAAATACCCTT-GTAGGGTAGAAA-TACCGAAATACCCCTGTAGGATAGAATTA
1 GTAAAATCACCAAAATACCCTTGGT-TTGTA-AAATTACCAAAATACCCTTGTAGGATAGAATTA
22612612 TCGAGATAAC
Statistics
Matches: 187, Mismatches: 28, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
78 2 0.01
79 7 0.04
80 64 0.34
81 106 0.57
82 5 0.03
83 3 0.02
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (81 bp):
GTAAAATCACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGTAGGATAGAATTACC
AAAATACCCCTAGTGG
Found at i:22612632 original size:81 final size:81
Alignment explanation
Indices: 22612468--22612641 Score: 199
Period size: 81 Copynumber: 2.1 Consensus size: 81
22612458 CCCCTAGTTT
* ** * *
22612468 GTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGTAGGGTAGAATTACC
1 GTAAAATCACCAAAATACCCTTGGTGGGTAAAATTACCAAAATACCCCTGTAGGATAGAATTACC
*
22612533 GAAATACCCCTGTAGG
66 GAAATAACCCTGTAGG
* *
22612549 GTAGAATCACCAAAATACCCTT-GTAGGGTAGAAA-TACCGAAATACCCCTGTAGGATAGAATTA
1 GTAAAATCACCAAAATACCCTTGGT-GGGTA-AAATTACCAAAATACCCCTGTAGGATAGAATTA
* * * *
22612612 TCGAGATAACCTTGTGGG
64 CCGAAATAACCCTGTAGG
*
22612630 GTAAAATTACCA
1 GTAAAATCACCA
22612642 TTTTGCCCCT
Statistics
Matches: 77, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
80 2 0.03
81 72 0.94
82 3 0.04
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.25
Consensus pattern (81 bp):
GTAAAATCACCAAAATACCCTTGGTGGGTAAAATTACCAAAATACCCCTGTAGGATAGAATTACC
GAAATAACCCTGTAGG
Found at i:22612879 original size:25 final size:25
Alignment explanation
Indices: 22612845--22612914 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
22612835 AGGAAGTGCT
*
22612845 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
22612870 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
22612895 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
22612915 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:22612927 original size:24 final size:24
Alignment explanation
Indices: 22612844--22612927 Score: 107
Period size: 25 Copynumber: 3.4 Consensus size: 24
22612834 GAGGAAGTGC
*
22612844 TAAAAGGGCTTTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
22612869 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
22612893 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTTTGCCCCAGTTTAT
22612917 TAAAAGAGGCT
1 TAAAAG-GGCT
22612928 AGGCCTCCAG
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
23 5 0.09
24 8 0.15
25 40 0.75
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:22612938 original size:50 final size:50
Alignment explanation
Indices: 22612845--22612939 Score: 122
Period size: 50 Copynumber: 1.9 Consensus size: 50
22612835 AGGAAGTGCT
**
22612845 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
**
22612895 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
22612940 ATATGATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 24 0.62
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (50 bp):
AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:22615438 original size:21 final size:21
Alignment explanation
Indices: 22615396--22615439 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
22615386 TTGGCCGAAT
*
22615396 ATCTATTATTCCCCTTTTCCA
1 ATCTATTATTCCCCTTTGCCA
*
22615417 ATCTATT-TTCCTCTTTGGCCA
1 ATCTATTATTCCCCTTT-GCCA
22615438 AT
1 AT
22615440 TACTTCATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.18, C:0.30, G:0.05, T:0.48
Consensus pattern (21 bp):
ATCTATTATTCCCCTTTGCCA
Found at i:22616996 original size:46 final size:46
Alignment explanation
Indices: 22616831--22617000 Score: 166
Period size: 46 Copynumber: 3.7 Consensus size: 46
22616821 AACCCACCCC
* * * * * * *
22616831 TAAGTGAACTCGGAATCAACTCAACAAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
* * * *
22616877 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC--A-GAC-ATTTGCATCCA
* *
22616925 TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
22616970 TAAGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
22617001 GGAAGCTCAA
Statistics
Matches: 100, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 3 0.03
46 53 0.53
47 26 0.26
48 2 0.02
49 3 0.03
50 4 0.04
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
Found at i:22617022 original size:46 final size:45
Alignment explanation
Indices: 22616881--22617022 Score: 121
Period size: 46 Copynumber: 3.1 Consensus size: 45
22616871 CATCCATAAA
*
22616881 TGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCTCA-
1 TGAACTCGGACTCAACTCAACGAGTTCGGAAGCTC-A---ACCATCT-AG
* * ** * *
22616928 CGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCAT-AAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGA-AGCT-CAACCATCTAG
22616974 TGAACTCGGACTCAACTCAACGAGTTCGGAAGCTCAACCATCCTAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGAAGCTCAACCAT-CTAG
22617020 TGA
1 TGA
22617023 CATGTCACTT
Statistics
Matches: 75, Mismatches: 13, Indels: 15
0.73 0.13 0.15
Matches are distributed among these distances:
44 6 0.08
45 3 0.04
46 33 0.44
47 31 0.41
49 1 0.01
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGAAGCTCAACCATCTAG
Found at i:22620079 original size:29 final size:29
Alignment explanation
Indices: 22620043--22620099 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
22620033 AAATAAATAT
22620043 GGAAAGGGTTTTTCAACGATATCATATTG
1 GGAAAGGGTTTTTCAACGATATCATATTG
22620072 GGAAAGGGTTTTTCAACGATATCATATT
1 GGAAAGGGTTTTTCAACGATATCATATT
22620100 TTGCAAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.35
Consensus pattern (29 bp):
GGAAAGGGTTTTTCAACGATATCATATTG
Found at i:22620505 original size:95 final size:95
Alignment explanation
Indices: 22620342--22620531 Score: 371
Period size: 95 Copynumber: 2.0 Consensus size: 95
22620332 CTTTCTGAAA
*
22620342 TTAAGCAGTCATATGTACTTCTAAGGATAAATGCACACATAGAATGTCCGGAAAATGTCATAGTA
1 TTAAGCAGTCATATGTACTTCTAAGGATAAATGCACACATAGAATGTCCAGAAAATGTCATAGTA
22620407 ACTACCCGACTATAACCATTGTACTCAACC
66 ACTACCCGACTATAACCATTGTACTCAACC
22620437 TTAAGCAGTCATATGTACTTCTAAGGATAAATGCACACATAGAATGTCCAGAAAATGTCATAGTA
1 TTAAGCAGTCATATGTACTTCTAAGGATAAATGCACACATAGAATGTCCAGAAAATGTCATAGTA
22620502 ACTACCCGACTATAACCATTGTACTCAACC
66 ACTACCCGACTATAACCATTGTACTCAACC
22620532 ATCAATATAA
Statistics
Matches: 94, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
95 94 1.00
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.26
Consensus pattern (95 bp):
TTAAGCAGTCATATGTACTTCTAAGGATAAATGCACACATAGAATGTCCAGAAAATGTCATAGTA
ACTACCCGACTATAACCATTGTACTCAACC
Found at i:22622630 original size:24 final size:24
Alignment explanation
Indices: 22622601--22622649 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
22622591 AATCATACAT
22622601 AAAGTTATATCAACTTCTTTATAA
1 AAAGTTATATCAACTTCTTTATAA
22622625 AAAGTTATATCAACTTCTTTATAA
1 AAAGTTATATCAACTTCTTTATAA
22622649 A
1 A
22622650 CACTTCCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.12, G:0.04, T:0.41
Consensus pattern (24 bp):
AAAGTTATATCAACTTCTTTATAA
Found at i:22637533 original size:43 final size:43
Alignment explanation
Indices: 22637481--22637564 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 43
22637471 AAATTGATTA
22637481 ACAACGCCAATGTCCCAGACATGATCTTACACGTAAGCACAAT
1 ACAACGCCAATGTCCCAGACATGATCTTACACGTAAGCACAAT
* * * * * *
22637524 ACAATGCCAATGTCCTAGACATGGTTTTACATGTAATCACA
1 ACAACGCCAATGTCCCAGACATGATCTTACACGTAAGCACA
22637565 TCTCGATAAC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.36, C:0.26, G:0.14, T:0.24
Consensus pattern (43 bp):
ACAACGCCAATGTCCCAGACATGATCTTACACGTAAGCACAAT
Found at i:22640887 original size:35 final size:35
Alignment explanation
Indices: 22640858--22640927 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
22640848 ATACATCACA
*
22640858 AAACAT-ATTTCATAACTACTAGTCTATACATGCC
1 AAACATCAATTCATAACTACTAGTCTATACATGCC
* *
22640892 ATACTTCAATTCATAACTACTAGTCTATACATGCC
1 AAACATCAATTCATAACTACTAGTCTATACATGCC
22640927 A
1 A
22640928 TACTTTAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
34 4 0.12
35 28 0.88
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (35 bp):
AAACATCAATTCATAACTACTAGTCTATACATGCC
Found at i:22640928 original size:35 final size:35
Alignment explanation
Indices: 22640866--22640932 Score: 134
Period size: 35 Copynumber: 1.9 Consensus size: 35
22640856 CAAAACATAT
22640866 TTCATAACTACTAGTCTATACATGCCATACTTCAA
1 TTCATAACTACTAGTCTATACATGCCATACTTCAA
22640901 TTCATAACTACTAGTCTATACATGCCATACTT
1 TTCATAACTACTAGTCTATACATGCCATACTT
22640933 TAAATATTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.33, C:0.25, G:0.06, T:0.36
Consensus pattern (35 bp):
TTCATAACTACTAGTCTATACATGCCATACTTCAA
Found at i:22652831 original size:87 final size:85
Alignment explanation
Indices: 22652622--22652820 Score: 229
Period size: 86 Copynumber: 2.3 Consensus size: 85
22652612 CAACTTAAAG
* * *
22652622 CAGAGGTAGCATCGAGAGAAGCTGAGGTCGAAAGAAAATATGAAGAACTCCAACACAACTTAAAG
1 CAGAGGCAGCAGCGAGAGAAGCAGAGGTC-AAAGAAAATATGAAGAACTCCAACACAACTTAAAG
*
22652687 CAGATGCACCAGCGAGGGAAC
65 CAGATGCACCAGCGAGAGAAC
* * *
22652708 CAGAGGCAGCATCGAGAGAAGCTGAGGTTCAAAGAAAATATGAAGAACTCCAGCTACAACTTAAA
1 CAGAGGCAGCAGCGAGAGAAGCAGAGG-TCAAAGAAAATATGAAGAACTCCAAC-ACAACTTAAA
* * *
22652773 GCTA-ATGTAGCAGCGAGAGAAG
64 GC-AGATGCACCAGCGAGAGAAC
* ** *
22652795 TAGAGGTTGCAGCGAGGGAAGCAGAG
1 CAGAGGCAGCAGCGAGAGAAGCAGAG
22652821 CAGAGGAGAA
Statistics
Matches: 98, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
86 49 0.50
87 48 0.49
88 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.29, T:0.13
Consensus pattern (85 bp):
CAGAGGCAGCAGCGAGAGAAGCAGAGGTCAAAGAAAATATGAAGAACTCCAACACAACTTAAAGC
AGATGCACCAGCGAGAGAAC
Found at i:22653192 original size:43 final size:43
Alignment explanation
Indices: 22653141--22653374 Score: 263
Period size: 43 Copynumber: 5.4 Consensus size: 43
22653131 CCGCTAAAAG
* *
22653141 TGATCTATAGCGGTGTTTGTGGGAGGAGCGCTGCTAAAAGTCA
1 TGATCTATAGCGGCGTTTGTGGGAGAAGCGCTGCTAAAAGTCA
* * *
22653184 TGATCTATAGCGGCATTTGTGGGGAAAAGCGCTACTAAAAGTCA
1 TGATCTATAGCGGCGTTTGT-GGGAGAAGCGCTGCTAAAAGTCA
* ** * ** *
22653228 TGATCTATAGCGGTGTTTGTCAGAAAAGTACTACTAAAAGTCA
1 TGATCTATAGCGGCGTTTGTGGGAGAAGCGCTGCTAAAAGTCA
* * * *
22653271 TGATCTATAGCGGCGTTTATAGGAGAAGCACCGCTAAAAGTCA
1 TGATCTATAGCGGCGTTTGTGGGAGAAGCGCTGCTAAAAGTCA
* * *
22653314 TGATCTATAGTGGCGTTTGTGGGAGAAGCGCCGCTAAAGGTCA
1 TGATCTATAGCGGCGTTTGTGGGAGAAGCGCTGCTAAAAGTCA
*
22653357 TGA-CTTTTAGCGGCGTTT
1 TGATC-TATAGCGGCGTTT
22653375 ATTTCTAAAA
Statistics
Matches: 163, Mismatches: 26, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
42 1 0.01
43 124 0.76
44 38 0.23
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (43 bp):
TGATCTATAGCGGCGTTTGTGGGAGAAGCGCTGCTAAAAGTCA
Found at i:22663277 original size:23 final size:23
Alignment explanation
Indices: 22663246--22663296 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
22663236 ACCTACTTTC
* * *
22663246 TTACTGTAGTAATTTTTGGGGTA
1 TTACAGTAGTAATTTTCGGGATA
22663269 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAGTAATTTTCGGGATA
22663292 TTACA
1 TTACA
22663297 TTTCTCTCCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.27, C:0.08, G:0.22, T:0.43
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:22664897 original size:50 final size:51
Alignment explanation
Indices: 22664780--22665110 Score: 417
Period size: 50 Copynumber: 6.6 Consensus size: 51
22664770 TATAATAACA
* * * * * *
22664780 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGAGA--TGT-TTCTTGAAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG-AG
* * * ** *
22664829 TGCAAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGA-
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGAG
* ** *
22664879 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATC-CTAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGAG
22664929 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTC-AG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGAG
* * *
22664979 TGACAATGCCATGTCCCGGATATGGTCTTACATGGGACCTCTCATCTCG-G
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGAG
*
22665029 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCG-G
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGAG
22665079 TGCCAATGCCATGTCCCAGACATGGTCTTACA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACA
22665111 CTGGCTCACA
Statistics
Matches: 246, Mismatches: 30, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
49 34 0.14
50 205 0.83
51 4 0.02
52 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (51 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGAG
Found at i:22667362 original size:27 final size:27
Alignment explanation
Indices: 22667332--22667509 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
22667322 ATATTGAGCC
* *
22667332 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
22667359 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
22667386 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
22667414 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
22667441 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
22667468 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
22667495 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22667510 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:22667444 original size:55 final size:54
Alignment explanation
Indices: 22667332--22667509 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
22667322 ATATTGAGCC
* * * * *
22667332 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
22667386 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
22667441 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
22667495 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22667510 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:22675365 original size:27 final size:27
Alignment explanation
Indices: 22675335--22675512 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
22675325 ATATTGAGCC
* *
22675335 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
22675362 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
22675389 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
22675417 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
22675444 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
22675471 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
22675498 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22675513 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:22675447 original size:55 final size:54
Alignment explanation
Indices: 22675335--22675512 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
22675325 ATATTGAGCC
* * * * *
22675335 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
22675389 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
22675444 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
22675498 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22675513 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:22681648 original size:12 final size:11
Alignment explanation
Indices: 22681633--22681664 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
22681623 GTTTTCCCTC
22681633 TTTTTTTCTATT
1 TTTTTTTC-ATT
22681645 TTTTTTTCATT
1 TTTTTTTCATT
22681656 TTTTTTTCA
1 TTTTTTTCA
22681665 AAATAATGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.60
12 8 0.40
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.81
Consensus pattern (11 bp):
TTTTTTTCATT
Found at i:22685964 original size:9 final size:9
Alignment explanation
Indices: 22685950--22685980 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
22685940 GTTAAACAAA
22685950 TCGAGTTAT
1 TCGAGTTAT
*
22685959 TCGAGTTAA
1 TCGAGTTAT
22685968 TCGAGTTAT
1 TCGAGTTAT
22685977 TCGA
1 TCGA
22685981 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:22686060 original size:9 final size:9
Alignment explanation
Indices: 22686033--22686069 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
22686023 TGAGTTTTCG
22686033 AATTCGAAT
1 AATTCGAAT
* *
22686042 AACTCAAAT
1 AATTCGAAT
22686051 AATTCGAAT
1 AATTCGAAT
22686060 AATTCGAAT
1 AATTCGAAT
22686069 A
1 A
22686070 TCAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:22686468 original size:21 final size:21
Alignment explanation
Indices: 22686439--22686478 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
22686429 TCCCTTAAAC
22686439 TTTTATTCCCCAAAACTTTTTA
1 TTTTATT-CCCAAAACTTTTTA
*
22686461 TTTT-TTCCCTAAACTTTT
1 TTTTATTCCCAAAACTTTT
22686479 ACTTCTCACC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 2 0.12
22 4 0.24
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.55
Consensus pattern (21 bp):
TTTTATTCCCAAAACTTTTTA
Found at i:22690757 original size:22 final size:24
Alignment explanation
Indices: 22690707--22690757 Score: 56
Period size: 24 Copynumber: 2.2 Consensus size: 24
22690697 TTACATTGCT
22690707 TTTATATTTTAATAATTGAGTATTA
1 TTTATATTTTAAT-ATTGAGTATTA
22690732 -TTATATATTTAAT-TTGA-T-TTA
1 TTTATAT-TTTAATATTGAGTATTA
22690753 TTTAT
1 TTTAT
22690758 TTATAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
21 3 0.12
22 5 0.21
23 4 0.17
24 6 0.25
25 6 0.25
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (24 bp):
TTTATATTTTAATATTGAGTATTA
Found at i:22690965 original size:20 final size:20
Alignment explanation
Indices: 22690927--22690966 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
22690917 AATATTTTCT
*
22690927 AGTAAATAATTTTATAGAAA
1 AGTAAATAATTTTACAGAAA
* *
22690947 AGTAAATCATTTTCCAGAAA
1 AGTAAATAATTTTACAGAAA
22690967 TTAATTTACG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.50, C:0.07, G:0.10, T:0.33
Consensus pattern (20 bp):
AGTAAATAATTTTACAGAAA
Found at i:22696930 original size:20 final size:20
Alignment explanation
Indices: 22696905--22696945 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
22696895 GAGTGGAAGG
22696905 ATTACCCAAGCACTAAGGGT
1 ATTACCCAAGCACTAAGGGT
22696925 ATTACCCAAGCACTAAGGGT
1 ATTACCCAAGCACTAAGGGT
22696945 A
1 A
22696946 AAGGTATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.20
Consensus pattern (20 bp):
ATTACCCAAGCACTAAGGGT
Found at i:22697168 original size:13 final size:13
Alignment explanation
Indices: 22697150--22697174 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22697140 AAATTATTAT
22697150 TAAAATAATTACA
1 TAAAATAATTACA
22697163 TAAAATAATTAC
1 TAAAATAATTAC
22697175 TAATCTAATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (13 bp):
TAAAATAATTACA
Found at i:22699405 original size:27 final size:27
Alignment explanation
Indices: 22699363--22699442 Score: 115
Period size: 27 Copynumber: 3.0 Consensus size: 27
22699353 ATCTCTTAGT
*
22699363 TCGCCACAAAGCCTTCCATTTTTTGGA
1 TCGCCACAAAGGCTTCCATTTTTTGGA
* * *
22699390 TTGCCACAAAGGCTTCCATTTCTTAGA
1 TCGCCACAAAGGCTTCCATTTTTTGGA
*
22699417 TCGCCACAAAGGCTTCCAATTTTTGG
1 TCGCCACAAAGGCTTCCATTTTTTGG
22699443 TGTGATCACA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.24, C:0.28, G:0.16, T:0.33
Consensus pattern (27 bp):
TCGCCACAAAGGCTTCCATTTTTTGGA
Found at i:22709177 original size:17 final size:17
Alignment explanation
Indices: 22709155--22709192 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
22709145 GTGATAATAA
22709155 TGTGGATATTTTGGCCT
1 TGTGGATATTTTGGCCT
22709172 TGTGGATATTTTGGCCT
1 TGTGGATATTTTGGCCT
22709189 TGTG
1 TGTG
22709193 ACCTTATGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.11, C:0.11, G:0.32, T:0.47
Consensus pattern (17 bp):
TGTGGATATTTTGGCCT
Found at i:22710862 original size:4 final size:4
Alignment explanation
Indices: 22710855--22710883 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
22710845 ATTGTTTGTA
22710855 TTTG TTTG TTTG TTTG TTTG TTTG TTTG T
1 TTTG TTTG TTTG TTTG TTTG TTTG TTTG T
22710884 ATGTATGTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.24, T:0.76
Consensus pattern (4 bp):
TTTG
Found at i:22710888 original size:4 final size:4
Alignment explanation
Indices: 22710881--22710909 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
22710871 TTTGTTTGTT
22710881 TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
22710910 TAGATTCAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TGTA
Found at i:22744514 original size:27 final size:28
Alignment explanation
Indices: 22744465--22744528 Score: 69
Period size: 27 Copynumber: 2.3 Consensus size: 28
22744455 GTGTTTTATT
*
22744465 TTAATTCATGTTTTAAATATGTCCTAG-
1 TTAATACATGTTTTAAATATGTCCTAGC
* *
22744492 TTAATACATGTTGTT-AATTTGTCTTAGC
1 TTAATACATGTT-TTAAATATGTCCTAGC
*
22744520 TTATTACAT
1 TTAATACAT
22744529 AATTTTAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
27 21 0.68
28 10 0.32
ACGTcount: A:0.28, C:0.11, G:0.11, T:0.50
Consensus pattern (28 bp):
TTAATACATGTTTTAAATATGTCCTAGC
Found at i:22745884 original size:33 final size:33
Alignment explanation
Indices: 22745847--22745913 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
22745837 TCGAAGAATC
*
22745847 ACACTATCCGATGATCCTTTTGGTAGATTTTGT
1 ACACTATCCGAGGATCCTTTTGGTAGATTTTGT
*
22745880 ACACTATCCTAGGATCCTTTTGGTAGATTTTGT
1 ACACTATCCGAGGATCCTTTTGGTAGATTTTGT
22745913 A
1 A
22745914 TACATCTTGG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (33 bp):
ACACTATCCGAGGATCCTTTTGGTAGATTTTGT
Found at i:22747671 original size:89 final size:90
Alignment explanation
Indices: 22747578--22747765 Score: 236
Period size: 90 Copynumber: 2.1 Consensus size: 90
22747568 CTCAATTTTT
* * *
22747578 TTCAAAAAAAAGTAATTAAGCCCCTCCCTTTTTTAT-ACTTAATTGAGCACTTAAATTTTTAAAA
1 TTCAAAAAAAAGTAATTAAGCCCCTCCCTTTTTTATCACTCAATTGAGCACTTAAACTTTCAAAA
* *
22747642 TGCATCAAAAA-AGCTCTCAAACTTG
66 TGCATCAAAAAGA-CCCTCAAAATTG
* * * * * * *
22747667 TTCAAAAAAAAGTAATTAAGTCCCTGCTTTTTTTTTCACTCAATTGGGTACTTGAACTTTCAAAA
1 TTCAAAAAAAAGTAATTAAGCCCCTCCCTTTTTTATCACTCAATTGAGCACTTAAACTTTCAAAA
*
22747732 TGCATCAAAAAGACCCTCAAAATTT
66 TGCATCAAAAAGACCCTCAAAATTG
22747757 TTCAAAAAA
1 TTCAAAAAA
22747766 TTACAATTAA
Statistics
Matches: 84, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
89 32 0.38
90 51 0.61
91 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.34
Consensus pattern (90 bp):
TTCAAAAAAAAGTAATTAAGCCCCTCCCTTTTTTATCACTCAATTGAGCACTTAAACTTTCAAAA
TGCATCAAAAAGACCCTCAAAATTG
Found at i:22747751 original size:90 final size:89
Alignment explanation
Indices: 22747560--22747765 Score: 234
Period size: 89 Copynumber: 2.3 Consensus size: 89
22747550 TTAAAGAGGT
* ** * *
22747560 AAAAAGTCCTCAATTTTTTTCAAAAAAAAGTAATTAAGCCCCTCCCTTTTTTATACTTAATTGAG
1 AAAAAGCCCTCAAAATTGTTCAAAAAAAAGTAATTAAGCCCCTCCCTTTTTTATACTCAATTGAG
* *
22747625 CACTTAAATTTTTAAAATGCATCA
66 CACTTAAACTTTCAAAATGCATCA
* * * * * * *
22747649 AAAAAGCTCTCAAACTTGTTCAAAAAAAAGTAATTAAGTCCCTGCTTTTTTTTTCACTCAATTGG
1 AAAAAGCCCTCAAAATTGTTCAAAAAAAAGTAATTAAGCCCCTCCCTTTTTTAT-ACTCAATTGA
* *
22747714 GTACTTGAACTTTCAAAATGCATC-
65 GCACTTAAACTTTCAAAATGCATCA
*
22747738 AAAAAGACCCTCAAAATTTTTCAAAAAA
1 AAAAAG-CCCTCAAAATTGTTCAAAAAA
22747766 TTACAATTAA
Statistics
Matches: 97, Mismatches: 18, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
89 51 0.53
90 46 0.47
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.34
Consensus pattern (89 bp):
AAAAAGCCCTCAAAATTGTTCAAAAAAAAGTAATTAAGCCCCTCCCTTTTTTATACTCAATTGAG
CACTTAAACTTTCAAAATGCATCA
Found at i:22747860 original size:20 final size:20
Alignment explanation
Indices: 22747814--22747861 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
22747804 AATAACTAAT
* *
22747814 AAATTTTATAAAAAATATTA
1 AAATTTAATAAAAAATATAA
*
22747834 AATTTTAAT-AAAAATATGAA
1 AAATTTAATAAAAAATAT-AA
22747854 AAATTTAA
1 AAATTTAA
22747862 AATTTATCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (20 bp):
AAATTTAATAAAAAATATAA
Found at i:22748188 original size:28 final size:30
Alignment explanation
Indices: 22748148--22748219 Score: 94
Period size: 28 Copynumber: 2.5 Consensus size: 30
22748138 ACTTTATAAA
*
22748148 ATTTTATAATTTTTTTAT-ATTTCTATA-T
1 ATTTCATAATTTTTTTATGATTTCTATAGT
*
22748176 ATTTCATAATTTTTTTATGATTTTTATAGT
1 ATTTCATAATTTTTTTATGATTTCTATAGT
* *
22748206 TTTTCCTAATTTTT
1 ATTTCATAATTTTT
22748220 AATAAATTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 17 0.45
29 8 0.21
30 13 0.34
ACGTcount: A:0.25, C:0.06, G:0.03, T:0.67
Consensus pattern (30 bp):
ATTTCATAATTTTTTTATGATTTCTATAGT
Found at i:22748232 original size:12 final size:12
Alignment explanation
Indices: 22748215--22748250 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 12
22748205 TTTTTCCTAA
*
22748215 TTTTTAATAAAT
1 TTTTTATTAAAT
22748227 TTTTTATTAAAAT
1 TTTTTATT-AAAT
22748240 TTTTTATTAAA
1 TTTTTATTAAA
22748251 ATTTAATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
TTTTTATTAAAT
Found at i:22748239 original size:13 final size:13
Alignment explanation
Indices: 22748223--22748254 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
22748213 AATTTTTAAT
22748223 AAATTTTTTATTA
1 AAATTTTTTATTA
22748236 AAATTTTTTATTA
1 AAATTTTTTATTA
22748249 AAATTT
1 AAATTT
22748255 AATAATATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
AAATTTTTTATTA
Found at i:22754199 original size:15 final size:15
Alignment explanation
Indices: 22754177--22754224 Score: 87
Period size: 15 Copynumber: 3.2 Consensus size: 15
22754167 TGTAAGACCT
22754177 TAATTAATAAAACCC
1 TAATTAATAAAACCC
*
22754192 TCATTAATAAAACCC
1 TAATTAATAAAACCC
22754207 TAATTAATAAAACCC
1 TAATTAATAAAACCC
22754222 TAA
1 TAA
22754225 AAACCCTGTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.27
Consensus pattern (15 bp):
TAATTAATAAAACCC
Found at i:22759451 original size:20 final size:21
Alignment explanation
Indices: 22759409--22759491 Score: 62
Period size: 21 Copynumber: 4.0 Consensus size: 21
22759399 CTTGAACACT
*
22759409 AAAAACCCTAACAATAAAACC
1 AAAAACCCTAACAACAAAACC
*
22759430 AAAAACTCTAA-AAC-AAACC
1 AAAAACCCTAACAACAAAACC
* * *
22759449 CAAAACCCTAATTAACATACACC
1 AAAAACCCTAA-CAACA-AAACC
* * *
22759472 CAAAACCCTAATAATAAAAC
1 AAAAACCCTAACAACAAAAC
22759492 TATTTTTCCT
Statistics
Matches: 51, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
19 14 0.27
20 2 0.04
21 16 0.31
22 4 0.08
23 15 0.29
ACGTcount: A:0.58, C:0.29, G:0.00, T:0.13
Consensus pattern (21 bp):
AAAAACCCTAACAACAAAACC
Found at i:22759453 original size:19 final size:20
Alignment explanation
Indices: 22759410--22759485 Score: 73
Period size: 19 Copynumber: 3.6 Consensus size: 20
22759400 TTGAACACTA
* * *
22759410 AAAACCCTAACAATAAAACCA
1 AAAACCCTAATAA-CAAACCC
*
22759431 AAAACTCTAA-AACAAACCC
1 AAAACCCTAATAACAAACCC
22759450 AAAACCCTAATTAACATACACCC
1 AAAACCCTAA-TAACA-A-ACCC
22759473 AAAACCCTAATAA
1 AAAACCCTAATAA
22759486 TAAAACTATT
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
19 14 0.30
20 2 0.04
21 13 0.28
22 4 0.09
23 14 0.30
ACGTcount: A:0.57, C:0.30, G:0.00, T:0.13
Consensus pattern (20 bp):
AAAACCCTAATAACAAACCC
Found at i:22762019 original size:20 final size:22
Alignment explanation
Indices: 22761982--22762027 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
22761972 AAAAGAAGAA
22761982 ATTTAAGAACAAATAATAAA-T
1 ATTTAAGAACAAATAATAAATT
22762003 ATTTAA-AAC-AATAAATAAATT
1 ATTTAAGAACAAAT-AATAAATT
22762024 ATTT
1 ATTT
22762028 TAATAAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 3 0.13
20 9 0.39
21 11 0.48
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (22 bp):
ATTTAAGAACAAATAATAAATT
Found at i:22766713 original size:19 final size:19
Alignment explanation
Indices: 22766659--22766713 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 19
22766649 TTAAACTTAA
22766659 TCACTTTAATATTAAATCT
1 TCACTTTAATATTAAATCT
* * *
22766678 T-A-TTAAAATAATAAAATGT
1 TCACTT-TAAT-ATTAAATCT
22766697 TCACTTTAATATTAAAT
1 TCACTTTAATATTAAAT
22766714 TAATAAAATA
Statistics
Matches: 27, Mismatches: 5, Indels: 8
0.68 0.12 0.20
Matches are distributed among these distances:
17 2 0.07
18 4 0.15
19 15 0.56
20 4 0.15
21 2 0.07
ACGTcount: A:0.45, C:0.09, G:0.02, T:0.44
Consensus pattern (19 bp):
TCACTTTAATATTAAATCT
Found at i:22773570 original size:15 final size:15
Alignment explanation
Indices: 22773546--22773577 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
22773536 TATGCATGCA
*
22773546 AAATATAAAAGACAT
1 AAATACAAAAGACAT
22773561 AAATACAAAAGACAT
1 AAATACAAAAGACAT
22773576 AA
1 AA
22773578 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:22776828 original size:81 final size:82
Alignment explanation
Indices: 22776693--22776893 Score: 325
Period size: 81 Copynumber: 2.5 Consensus size: 82
22776683 CAAACTAATT
* * *
22776693 CTGTGATTGGCTAAGGCCCTACTGCATATTTGAAACTAATTCTGTGATGGGCTAAGGCCCTACTG
1 CTGTGATAGGCTAAGGCCCTACTGCATATTTGATACTGATTCTGTGATGGGCTAAGGCCCTACTG
*
22776758 CATATTTGATACT-ATA
66 CATATCTGATACTGATA
22776774 CTGTGATAGGCTAAGGCCCTACTGCATATTTGATACTGATAT-TGTGATGGGCTAAGGCCCTACT
1 CTGTGATAGGCTAAGGCCCTACTGCATATTTGATACTGAT-TCTGTGATGGGCTAAGGCCCTACT
22776838 GCATATCTGATACTGATA
65 GCATATCTGATACTGATA
* *
22776856 CTGTGATGGGCTAAGGCCCTACTGCGTATTTGATACTG
1 CTGTGATAGGCTAAGGCCCTACTGCATATTTGATACTG
22776894 TACTAAGATG
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
81 72 0.64
82 40 0.36
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.32
Consensus pattern (82 bp):
CTGTGATAGGCTAAGGCCCTACTGCATATTTGATACTGATTCTGTGATGGGCTAAGGCCCTACTG
CATATCTGATACTGATA
Found at i:22776893 original size:41 final size:41
Alignment explanation
Indices: 22776693--22776913 Score: 329
Period size: 41 Copynumber: 5.4 Consensus size: 41
22776683 CAAACTAATT
* * * *
22776693 CTGTGATTGGCTAAGGCCCTACTGCATATTTGAAACTAATT
1 CTGTGATGGGCTAAGGCCCTACTGCATATTTGATACTGATA
22776734 CTGTGATGGGCTAAGGCCCTACTGCATATTTGATACT-ATA
1 CTGTGATGGGCTAAGGCCCTACTGCATATTTGATACTGATA
*
22776774 CTGTGATAGGCTAAGGCCCTACTGCATATTTGATACTGATA
1 CTGTGATGGGCTAAGGCCCTACTGCATATTTGATACTGATA
* *
22776815 TTGTGATGGGCTAAGGCCCTACTGCATATCTGATACTGATA
1 CTGTGATGGGCTAAGGCCCTACTGCATATTTGATACTGATA
*
22776856 CTGTGATGGGCTAAGGCCCTACTGCGTATTTGATACTG-TA
1 CTGTGATGGGCTAAGGCCCTACTGCATATTTGATACTGATA
** *
22776896 CTAAGATGGGTTAAGGCC
1 CTGTGATGGGCTAAGGCC
22776914 TAACCTGTTA
Statistics
Matches: 166, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
40 55 0.33
41 111 0.67
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (41 bp):
CTGTGATGGGCTAAGGCCCTACTGCATATTTGATACTGATA
Found at i:22776911 original size:122 final size:122
Alignment explanation
Indices: 22776694--22776913 Score: 341
Period size: 122 Copynumber: 1.8 Consensus size: 122
22776684 AAACTAATTC
* * *
22776694 TGTGATTGGCTAAGGCCCTACTGCATATTTGAAACTAATTCTGTGATGGGCTAAGGCCCTACTGC
1 TGTGATGGGCTAAGGCCCTACTGCATATCTGAAACTAATACTGTGATGGGCTAAGGCCCTACTGC
**
22776759 ATATTTGATACTATACTGTGATAGGCTAAGGCCCTACTGCATATTTGATACTGATAT
66 ATATTTGATACTATACTAAGATAGGCTAAGGCCCTACTGCATATTTGATACTGATAT
* *
22776816 TGTGATGGGCTAAGGCCCTACTGCATATCTGATACTGATACTGTGATGGGCTAAGGCCCTACTGC
1 TGTGATGGGCTAAGGCCCTACTGCATATCTGAAACTAATACTGTGATGGGCTAAGGCCCTACTGC
* * * *
22776881 GTATTTGATACTGTACTAAGATGGGTTAAGGCC
66 ATATTTGATACTATACTAAGATAGGCTAAGGCC
22776914 TAACCTGTTA
Statistics
Matches: 87, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
122 87 1.00
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (122 bp):
TGTGATGGGCTAAGGCCCTACTGCATATCTGAAACTAATACTGTGATGGGCTAAGGCCCTACTGC
ATATTTGATACTATACTAAGATAGGCTAAGGCCCTACTGCATATTTGATACTGATAT
Found at i:22778438 original size:16 final size:17
Alignment explanation
Indices: 22778413--22778445 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
22778403 AAATTCATGT
*
22778413 GAATGCTTTA-TAATAA
1 GAATGATTTATTAATAA
22778429 GAATGATTTATTAATAA
1 GAATGATTTATTAATAA
22778446 CAAGACAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.45, C:0.03, G:0.12, T:0.39
Consensus pattern (17 bp):
GAATGATTTATTAATAA
Found at i:22783539 original size:51 final size:51
Alignment explanation
Indices: 22783480--22783971 Score: 465
Period size: 51 Copynumber: 9.7 Consensus size: 51
22783470 TATCGATGAA
* * *
22783480 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATGTTGGT
* * * * * * *
22783531 CACATGTGTAGTACTAAGTGAAGGCTACAATGTGTACCGAGAAGCT-TTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAA-ATGTTGGT
* * * *
22783582 CACGTGTGTAGTATTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATGTTGGT
* * * * * * * * * *
22783633 CACATGTGTAGTACTAAGTCAAGACTACAATGTGTACCAAGAAGCT-TTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAA-ATGTTGGT
* *
22783684 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATGTTGGT
* * * * * * * *
22783735 CACATGTGTAGTACTAAGTGAAGACTACAATGTGTACCGAGAAGCT-TTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAA-ATGTTGGT
* * * * *
22783786 CACGTGTGTAGTACTGTGTGAAGGCTACAATGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATGTTGGT
* * * *
22783837 CACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGA-AAA-GCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATG--TTGGT
* ** *
22783888 CACGTGTGTAGTACTATGTGAAGGTTACTACGTGAACCG-TAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATGTTGGT
*
22783938 CACGTATGTAGTACTATGTGAAGGCTACTACGTG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
22783972 TATCAAATGA
Statistics
Matches: 349, Mismatches: 82, Indels: 21
0.77 0.18 0.05
Matches are distributed among these distances:
49 1 0.00
50 42 0.12
51 303 0.87
52 3 0.01
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (51 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATGTTGGT
Found at i:22783661 original size:102 final size:102
Alignment explanation
Indices: 22783480--22783923 Score: 780
Period size: 102 Copynumber: 4.4 Consensus size: 102
22783470 TATCGATGAA
22783480 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
*
22783545 TAAGTGAAGGCTACAATGTGTACCGAGAAGCTTTGGT
66 TAAGTGAAGACTACAATGTGTACCGAGAAGCTTTGGT
*
22783582 CACGTGTGTAGTATTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
* *
22783647 TAAGTCAAGACTACAATGTGTACCAAGAAGCTTTGGT
66 TAAGTGAAGACTACAATGTGTACCGAGAAGCTTTGGT
*
22783684 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
22783749 TAAGTGAAGACTACAATGTGTACCGAGAAGCTTTGGT
66 TAAGTGAAGACTACAATGTGTACCGAGAAGCTTTGGT
* *
22783786 CACGTGTGTAGTACTGTGTGAAGGCTACAATGTGAATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
* * *
22783851 TAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGT
66 TAAGTGAAGACTACAATGTGTACCGAGAAGCTTTGGT
* *
22783888 CACGTGTGTAGTACTATGTGAAGGTTACTACGTGAA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAA
22783924 CCGTAAAACT
Statistics
Matches: 324, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
102 324 1.00
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (102 bp):
CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
TAAGTGAAGACTACAATGTGTACCGAGAAGCTTTGGT
Found at i:22787601 original size:19 final size:19
Alignment explanation
Indices: 22787577--22787613 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
22787567 TCCTTAAACT
22787577 AAAAATAAAATAAAACTAA
1 AAAAATAAAATAAAACTAA
* *
22787596 AAAAATAAGATGAAACTA
1 AAAAATAAAATAAAACTA
22787614 TAAGGCTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.73, C:0.05, G:0.05, T:0.16
Consensus pattern (19 bp):
AAAAATAAAATAAAACTAA
Found at i:22791024 original size:22 final size:22
Alignment explanation
Indices: 22790999--22791047 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
22790989 TAATTAGGGA
* *
22790999 AATTATGGAAATATTATTTTGT
1 AATTATAGAAATATTATTTCGT
22791021 AATTATAGAAATATTATTTCGT
1 AATTATAGAAATATTATTTCGT
22791043 AATTA
1 AATTA
22791048 ATTTATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.41, C:0.02, G:0.10, T:0.47
Consensus pattern (22 bp):
AATTATAGAAATATTATTTCGT
Found at i:22804030 original size:45 final size:45
Alignment explanation
Indices: 22803966--22804153 Score: 193
Period size: 45 Copynumber: 4.2 Consensus size: 45
22803956 TACTACGTCT
* * *
22803966 ACCGGGTACCAGTGATTATAAAGGTGGTTGTTGTGTGCTGATTCC
1 ACCGGGTATCATTGATTATAAAGGTGGTTGCTGTGTGCTGATTCC
* *
22804011 ACCGGGTATCATTGATTATAAAGGTGGTTGCTGTATGCTGGTTCC
1 ACCGGGTATCATTGATTATAAAGGTGGTTGCTGTGTGCTGATTCC
* ** * *
22804056 ACCGGGTA-CTATTGATTATGAAGGTCATTGCTATGTTCTGATTCC
1 ACCGGGTATC-ATTGATTATAAAGGTGGTTGCTGTGTGCTGATTCC
* * * * * *
22804101 ACCGAGTATCATTGACTATAAGGGTGG-TGCTATGTTCTCA-TCC
1 ACCGGGTATCATTGATTATAAAGGTGGTTGCTGTGTGCTGATTCC
*
22804144 ACCGTGTATC
1 ACCGGGTATC
22804154 TGTTATTATT
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
43 12 0.10
44 13 0.11
45 95 0.79
46 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (45 bp):
ACCGGGTATCATTGATTATAAAGGTGGTTGCTGTGTGCTGATTCC
Found at i:22811780 original size:16 final size:16
Alignment explanation
Indices: 22811759--22811790 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
22811749 TTATATTTTG
22811759 TAAATGGACTTTTATT
1 TAAATGGACTTTTATT
22811775 TAAATGGACTTTTATT
1 TAAATGGACTTTTATT
22811791 AATTTTTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.12, T:0.50
Consensus pattern (16 bp):
TAAATGGACTTTTATT
Found at i:22819923 original size:19 final size:19
Alignment explanation
Indices: 22819899--22819938 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
22819889 TGATAGGAGA
*
22819899 GAGGTGGCAAGGTGGTGGT
1 GAGGTGGCAAGGTGATGGT
**
22819918 GAGGTGGTGAGGTGATGGT
1 GAGGTGGCAAGGTGATGGT
22819937 GA
1 GA
22819939 TGCAAAGCTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.17, C:0.03, G:0.57, T:0.23
Consensus pattern (19 bp):
GAGGTGGCAAGGTGATGGT
Found at i:22845118 original size:38 final size:39
Alignment explanation
Indices: 22845058--22845219 Score: 167
Period size: 38 Copynumber: 4.3 Consensus size: 39
22845048 TCCTCGTTCA
* *
22845058 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC
* *
22845097 AATGCCTTC-GGACATAACCCGGATTTAATAACTCGC-C
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC
* *
22845134 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGACA-
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTC-ACAC
* * * *
22845173 AA-GCCTTCGGG-CTTAACCC-GAATT-GTATCTCGCAC
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC
22845208 AAATGCCTTCGG
1 -AATGCCTTCGG
22845220 ATCTTAGTCC
Statistics
Matches: 107, Mismatches: 10, Indels: 14
0.82 0.08 0.11
Matches are distributed among these distances:
34 2 0.02
35 7 0.07
36 6 0.06
37 26 0.24
38 54 0.50
39 12 0.11
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC
Found at i:22845216 original size:37 final size:37
Alignment explanation
Indices: 22845092--22845219 Score: 122
Period size: 37 Copynumber: 3.4 Consensus size: 37
22845082 TTTAGTAACT
* * *
22845092 CACACAATGCCTTCGGACATAACCCGGATT-TAATAACTCG
1 CACA-AATGCCTTCGGGCTTAACCCGAATTGT-AT--CTCG
*
22845132 C-C-AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCG
1 CACAAATGCCTTCGGG-CTTAACCC-GAATT-GTATCTCG
22845170 -ACAAA-GCCTTCGGGCTTAACCCGAATTGTATCTCG
1 CACAAATGCCTTCGGGCTTAACCCGAATTGTATCTCG
22845205 CACAAATGCCTTCGG
1 CACAAATGCCTTCGG
22845220 ATCTTAGTCC
Statistics
Matches: 75, Mismatches: 5, Indels: 19
0.76 0.05 0.19
Matches are distributed among these distances:
35 8 0.11
36 9 0.12
37 27 0.36
38 21 0.28
39 6 0.08
40 3 0.04
41 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
CACAAATGCCTTCGGGCTTAACCCGAATTGTATCTCG
Found at i:22845219 original size:75 final size:76
Alignment explanation
Indices: 22845056--22845219 Score: 194
Period size: 76 Copynumber: 2.2 Consensus size: 76
22845046 GCTCCTCGTT
* * *
22845056 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGACATAACCCGGAT
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAATGCCTTCGGACATAACCCGAAT
22845121 TTAATAACTCGC
66 TTAAT-ACTCGC
* * * *
22845133 C-AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGACA-AA-GCCTTCGGGCTTAACCCGAA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTC-ACACAATGCCTTCGGACATAACCCGAA
22845195 TTGT-AT-CTCGC
65 TT-TAATACTCGC
22845206 ACAAATGCCTTCGG
1 -CAAATGCCTTCGG
22845220 ATCTTAGTCC
Statistics
Matches: 76, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
73 5 0.07
74 1 0.01
75 32 0.42
76 34 0.45
77 4 0.05
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.26
Consensus pattern (76 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAATGCCTTCGGACATAACCCGAAT
TTAATACTCGC
Found at i:22845232 original size:75 final size:76
Alignment explanation
Indices: 22845056--22845233 Score: 197
Period size: 75 Copynumber: 2.4 Consensus size: 76
22845046 GCTCCTCGTT
* * *
22845056 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGACATAACCCGGAT
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAATGCCTTCGGACATAACCCGAAT
22845121 TTAATAACTCGC
66 TTAAT-ACTCGC
* * * *
22845133 C-AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGACA-AA-GCCTTCGGGCTTAACCCGAA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTC-ACACAATGCCTTCGGACATAACCCGAA
22845195 TTGT-AT-CTCGC
65 TT-TAATACTCGC
*
22845206 ACAAATGCCTTC-GGATCTTAGTCCGGAT
1 -CAAATGCCTTCGGGA-CTTAGCCCGGAT
22845234 ATATTCACTT
Statistics
Matches: 87, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
73 5 0.06
74 4 0.05
75 40 0.46
76 34 0.39
77 4 0.05
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (76 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAATGCCTTCGGACATAACCCGAAT
TTAATACTCGC
Found at i:22845281 original size:41 final size:41
Alignment explanation
Indices: 22845204--22845281 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
22845194 ATTGTATCTC
* * *
22845204 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
22845245 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
22845282 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:22849008 original size:27 final size:27
Alignment explanation
Indices: 22848978--22849155 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
22848968 ATATTGAGCC
* *
22848978 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
22849005 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
22849032 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
22849060 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
22849087 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
22849114 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
22849141 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22849156 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:22849090 original size:55 final size:54
Alignment explanation
Indices: 22848978--22849155 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
22848968 ATATTGAGCC
* * * * *
22848978 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
22849032 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
22849087 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
22849141 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22849156 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:22857010 original size:27 final size:27
Alignment explanation
Indices: 22856980--22857157 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
22856970 ATATTGAGCC
* *
22856980 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
22857007 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
22857034 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
22857062 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
22857089 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
22857116 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
22857143 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22857158 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:22857092 original size:55 final size:54
Alignment explanation
Indices: 22856980--22857157 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
22856970 ATATTGAGCC
* * * * *
22856980 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
22857034 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
22857089 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
22857143 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22857158 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:22861857 original size:26 final size:27
Alignment explanation
Indices: 22861828--22861888 Score: 67
Period size: 26 Copynumber: 2.3 Consensus size: 27
22861818 CTTGTATAGT
22861828 TTTTCCTCTTTTT-TTTCTCA-T-TTTTC
1 TTTT-CTCTTTTTATTT-TCACTCTTTTC
22861854 TTTTCT-TTTTTATTTTCACTCTTTTC
1 TTTTCTCTTTTTATTTTCACTCTTTTC
22861880 TTTTTCTCT
1 -TTTTCTCT
22861889 CGTTTGTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
24 8 0.27
25 6 0.20
26 9 0.30
27 6 0.20
28 1 0.03
ACGTcount: A:0.05, C:0.21, G:0.00, T:0.74
Consensus pattern (27 bp):
TTTTCTCTTTTTATTTTCACTCTTTTC
Found at i:22866142 original size:17 final size:18
Alignment explanation
Indices: 22866120--22866157 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
22866110 TAATCAAATT
22866120 ATCTCAT-ATTAAAAAAA
1 ATCTCATGATTAAAAAAA
* *
22866137 ATCTCATGCTTGAAAAAA
1 ATCTCATGATTAAAAAAA
22866155 ATC
1 ATC
22866158 ATTATATGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.50, C:0.16, G:0.05, T:0.29
Consensus pattern (18 bp):
ATCTCATGATTAAAAAAA
Found at i:22869198 original size:20 final size:21
Alignment explanation
Indices: 22869160--22869198 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
22869150 CTTGAGACTA
*
22869160 TGTCGCGACATAGGAGGGCTG
1 TGTCGCGACATACGAGGGCTG
22869181 TGTCGCGACAT-CGAGGGC
1 TGTCGCGACATACGAGGGC
22869199 AGTTTCACTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.18, C:0.23, G:0.41, T:0.18
Consensus pattern (21 bp):
TGTCGCGACATACGAGGGCTG
Found at i:22874231 original size:33 final size:33
Alignment explanation
Indices: 22874194--22874290 Score: 104
Period size: 33 Copynumber: 2.9 Consensus size: 33
22874184 CACATTACCA
* * *
22874194 GAAACATATGCTAGATCAGAATGTCATATTTTT
1 GAAACATATACCAAATCAGAATGTCATATTTTT
*
22874227 GAAACATATACCAAATCAGAATGTCATATTTTCA
1 GAAACATATACCAAATCAGAATGTCATATTTT-T
* * * * *
22874261 AAAACTTATATCATATCAAAATGTCATATT
1 GAAACATATACCAAATCAGAATGTCATATT
22874291 ATATCCCAAC
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
33 29 0.54
34 25 0.46
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.34
Consensus pattern (33 bp):
GAAACATATACCAAATCAGAATGTCATATTTTT
Found at i:22874289 original size:34 final size:33
Alignment explanation
Indices: 22874208--22874290 Score: 103
Period size: 34 Copynumber: 2.5 Consensus size: 33
22874198 CATATGCTAG
**
22874208 ATCAGAATGTCATATTTTTGAAACATATACCAA
1 ATCAGAATGTCATATTTTAAAAACATATACCAA
* * *
22874241 ATCAGAATGTCATATTTTCAAAAACTTATATCAT
1 ATCAGAATGTCATATTTT-AAAAACATATACCAA
*
22874275 ATCAAAATGTCATATT
1 ATCAGAATGTCATATT
22874291 ATATCCCAAC
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
33 18 0.42
34 25 0.58
ACGTcount: A:0.42, C:0.14, G:0.07, T:0.36
Consensus pattern (33 bp):
ATCAGAATGTCATATTTTAAAAACATATACCAA
Found at i:22874887 original size:37 final size:37
Alignment explanation
Indices: 22874837--22874909 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
22874827 CTATGTGGCC
*
22874837 CACATAGGCTACCTATCCTGCCCGTATGATTTCACAA
1 CACATAGGCTACCTAACCTGCCCGTATGATTTCACAA
* *
22874874 CACATAGGCTACCTAACGTGCCTGTATGATTTCACA
1 CACATAGGCTACCTAACCTGCCCGTATGATTTCACA
22874910 CGGCCGTGTG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.27
Consensus pattern (37 bp):
CACATAGGCTACCTAACCTGCCCGTATGATTTCACAA
Found at i:22879180 original size:12 final size:12
Alignment explanation
Indices: 22879165--22879189 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22879155 AAACTGATTC
22879165 ATAAATATTTTT
1 ATAAATATTTTT
22879177 ATAAATATTTTT
1 ATAAATATTTTT
22879189 A
1 A
22879190 GAGTGTCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
ATAAATATTTTT
Found at i:22891230 original size:40 final size:40
Alignment explanation
Indices: 22891175--22891442 Score: 482
Period size: 40 Copynumber: 6.7 Consensus size: 40
22891165 GAGCACTGGA
22891175 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
22891215 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
22891255 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
22891295 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
22891335 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
22891375 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
22891415 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
22891443 ATGTGTTTGC
Statistics
Matches: 219, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 219 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:22891828 original size:115 final size:115
Alignment explanation
Indices: 22891626--22891846 Score: 442
Period size: 115 Copynumber: 1.9 Consensus size: 115
22891616 CGAATTTTCG
22891626 GCTTTTAGAAAGGTTGATACCTTGTGTATATATGTTGATGAAGTGTGAAGTAAGTATGATTATGA
1 GCTTTTAGAAAGGTTGATACCTTGTGTATATATGTTGATGAAGTGTGAAGTAAGTATGATTATGA
22891691 GAATGTGTGTTAATAAAATGACTTAGTTAGCTATGTGAATGACTTAGTTA
66 GAATGTGTGTTAATAAAATGACTTAGTTAGCTATGTGAATGACTTAGTTA
22891741 GCTTTTAGAAAGGTTGATACCTTGTGTATATATGTTGATGAAGTGTGAAGTAAGTATGATTATGA
1 GCTTTTAGAAAGGTTGATACCTTGTGTATATATGTTGATGAAGTGTGAAGTAAGTATGATTATGA
22891806 GAATGTGTGTTAATAAAATGACTTAGTTAGCTATGTGAATG
66 GAATGTGTGTTAATAAAATGACTTAGTTAGCTATGTGAATG
22891847 TAATACTGTA
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
115 106 1.00
ACGTcount: A:0.32, C:0.05, G:0.25, T:0.38
Consensus pattern (115 bp):
GCTTTTAGAAAGGTTGATACCTTGTGTATATATGTTGATGAAGTGTGAAGTAAGTATGATTATGA
GAATGTGTGTTAATAAAATGACTTAGTTAGCTATGTGAATGACTTAGTTA
Found at i:22900113 original size:40 final size:40
Alignment explanation
Indices: 22900058--22900284 Score: 402
Period size: 40 Copynumber: 5.7 Consensus size: 40
22900048 AACATTGGAT
22900058 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
22900098 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
22900138 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
22900178 TATATCCGGGCTATGACCCGAAGGCAATTATGCG-GATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
22900217 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
22900257 TATGTCCGGGTTAAGACCCGAAGGCAAT
1 TATATCCGGGCTAAGACCCGAAGGCAAT
22900285 GTGTTGCGGC
Statistics
Matches: 178, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 37 0.21
40 141 0.79
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:22900272 original size:119 final size:120
Alignment explanation
Indices: 22900058--22900284 Score: 402
Period size: 119 Copynumber: 1.9 Consensus size: 120
22900048 AACATTGGAT
*
22900058 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGC
22900123 AATTATGCGAGTTGACATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
66 AATTATGCGAGTTGACATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
22900178 TATATCCGGGCTATGACCCGAAGGCAATTATGCG-GATGATATATCCGGGCTAAGACCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGC
* * *
22900242 AATTATGCGAGTTGATATGTCCGGGTTAAGACCCGAAGGCAAT
66 AATTATGCGAGTTGACATATCCGGGCTAAGACCCGAAGGCAAT
22900285 GTGTTGCGGC
Statistics
Matches: 102, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
119 69 0.68
120 33 0.32
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.22
Consensus pattern (120 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGC
AATTATGCGAGTTGACATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:22907341 original size:40 final size:40
Alignment explanation
Indices: 22907243--22907505 Score: 334
Period size: 40 Copynumber: 6.6 Consensus size: 40
22907233 TCCTCGTTCA
* * * * *
22907243 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
22907282 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
22907322 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
22907362 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
22907402 AATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
22907442 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
22907482 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
22907506 CAGCATTCAA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 37 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:22930781 original size:24 final size:26
Alignment explanation
Indices: 22930749--22930797 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 26
22930739 TCACGTGATA
*
22930749 ATTAAGTTTATA-T-AAAATAAAAAT
1 ATTAAGTTTAAATTAAAAATAAAAAT
22930773 ATTAAGTTTAAATTAAAAATAAAAA
1 ATTAAGTTTAAATTAAAAATAAAAA
22930798 ATAAAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 11 0.50
25 1 0.05
26 10 0.45
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (26 bp):
ATTAAGTTTAAATTAAAAATAAAAAT
Found at i:22930808 original size:26 final size:26
Alignment explanation
Indices: 22930762--22930811 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
22930752 AAGTTTATAT
* *
22930762 AAAATAAAAATATTAAGTTTAAATTA
1 AAAATAAAAATATAAAATTTAAATTA
22930788 AAAATAAAAA-ATAAAAATTTAAAT
1 AAAATAAAAATAT-AAAATTTAAAT
22930812 ATTAAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 2 0.10
26 19 0.90
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (26 bp):
AAAATAAAAATATAAAATTTAAATTA
Found at i:22931857 original size:19 final size:20
Alignment explanation
Indices: 22931829--22931870 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
22931819 TGTTAAAAAT
*
22931829 TAATTTTAAAATAAT-TTAA
1 TAATTATAAAATAATATTAA
*
22931848 TAATTATAAAATTATATTAA
1 TAATTATAAAATAATATTAA
22931868 TAA
1 TAA
22931871 AATAAAACGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
TAATTATAAAATAATATTAA
Found at i:22932114 original size:25 final size:26
Alignment explanation
Indices: 22932071--22932130 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
22932061 ATAAATAATT
*
22932071 AAATAT-ATTTTTTAATAA-TATTAA
1 AAATATAATATTTTAATAATTATTAA
*
22932095 AAATATAATATTTTAATAATTTTTAA
1 AAATATAATATTTTAATAATTATTAA
*
22932121 AAATAAAATA
1 AAATATAATA
22932131 AAAATTTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 6 0.19
25 11 0.35
26 14 0.45
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (26 bp):
AAATATAATATTTTAATAATTATTAA
Found at i:22938512 original size:30 final size:30
Alignment explanation
Indices: 22938472--22938528 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
22938462 TTTATTTATC
22938472 TTTTTAGTTTTATGATATATATTATATTCT
1 TTTTTAGTTTTATGATATATATTATATTCT
*
22938502 TTTTTCGTTTTATGATATATATTATAT
1 TTTTTAGTTTTATGATATATATTATAT
22938529 ACTTAGTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.26, C:0.04, G:0.07, T:0.63
Consensus pattern (30 bp):
TTTTTAGTTTTATGATATATATTATATTCT
Found at i:22945165 original size:137 final size:138
Alignment explanation
Indices: 22944958--22945230 Score: 370
Period size: 137 Copynumber: 2.0 Consensus size: 138
22944948 ATGTCATTAG
*** * * ** *
22944958 GGTTACCATGTTTTGGGTGATGGTCCTGAATGTCCTATCGATGGTTGAGGTCTGGCATTTGTTGC
1 GGTTACCATGTTTCAAGTGATGGTCCTGAATGTCCTACCGATGGCTGAGGTCCAGCATTAGTTGC
* * ***
22945023 AGATACTCATTAGCTTGTGTGAGC-GACATTGTGTAGC-TACATTTTGACCGTCAGCTTGTGTGA
66 AGATACTCATCAGCTTGTGTGAGCAG-CATCGTGTAGCTTACATTCCAACCGTCAGCTTGTGTGA
22945086 GCAGACCTA
130 GCAGACCTA
* *
22945095 GGTTACCATGTTTCAAGTGCTGGTCCTGAATGTCCTACCGATGGCTGAGGTCCAGCATTAGTTGT
1 GGTTACCATGTTTCAAGTGATGGTCCTGAATGTCCTACCGATGGCTGAGGTCCAGCATTAGTTGC
* *
22945160 GGATACTCATCAGCTTGTGTGAGCAGCATCGTGTAGCTTACATTCCAACCGTTAGCTTGTGTGAG
66 AGATACTCATCAGCTTGTGTGAGCAGCATCGTGTAGCTTACATTCCAACCGTCAGCTTGTGTGAG
22945225 CAGACC
131 CAGACC
22945231 CATTTTATAG
Statistics
Matches: 117, Mismatches: 17, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
137 87 0.74
138 30 0.26
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.33
Consensus pattern (138 bp):
GGTTACCATGTTTCAAGTGATGGTCCTGAATGTCCTACCGATGGCTGAGGTCCAGCATTAGTTGC
AGATACTCATCAGCTTGTGTGAGCAGCATCGTGTAGCTTACATTCCAACCGTCAGCTTGTGTGAG
CAGACCTA
Found at i:22947709 original size:15 final size:15
Alignment explanation
Indices: 22947689--22947720 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
22947679 GTGTCCCTCG
*
22947689 CACACGGCCTCATAT
1 CACACGACCTCATAT
22947704 CACACGACCTCATAT
1 CACACGACCTCATAT
22947719 CA
1 CA
22947721 TTTTTTAGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.41, G:0.09, T:0.19
Consensus pattern (15 bp):
CACACGACCTCATAT
Found at i:22949363 original size:31 final size:31
Alignment explanation
Indices: 22949325--22949383 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
22949315 ATGGGTTACA
22949325 ATGCATTACCAAATAAATACCAATTAAAACG
1 ATGCATTACCAAATAAATACCAATTAAAACG
22949356 ATGCATTACCAAATAAATACCAATTAAA
1 ATGCATTACCAAATAAATACCAATTAAA
22949384 CTGACTTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.53, C:0.19, G:0.05, T:0.24
Consensus pattern (31 bp):
ATGCATTACCAAATAAATACCAATTAAAACG
Found at i:22950661 original size:13 final size:13
Alignment explanation
Indices: 22950643--22950667 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22950633 TTCATTTTAA
22950643 ATCATATATATAT
1 ATCATATATATAT
22950656 ATCATATATATA
1 ATCATATATATA
22950668 CAAGTTAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
ATCATATATATAT
Found at i:22953729 original size:13 final size:13
Alignment explanation
Indices: 22953711--22953736 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22953701 TGCTTTTATT
22953711 TATAGTTGAACTC
1 TATAGTTGAACTC
22953724 TATAGTTGAACTC
1 TATAGTTGAACTC
22953737 CAAAAGATCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TATAGTTGAACTC
Found at i:22955994 original size:27 final size:27
Alignment explanation
Indices: 22955964--22956141 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
22955954 ATATTGAGTC
* * * *
22955964 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
22955991 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
22956018 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
22956046 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
22956073 CGCACACTTAGTGC-ATCATACTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
22956100 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
22956127 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22956142 GTACAATTTC
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:22956103 original size:82 final size:81
Alignment explanation
Indices: 22955985--22956140 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
22955975 TGCTATATAA
* *
22955985 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
22956050 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
22956067 TCAATTCGCACACTTAGTGC-ATCATACTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
22956131 CACTTAGTGC
65 CACTTAGTGC
22956141 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:22975069 original size:24 final size:24
Alignment explanation
Indices: 22975026--22975071 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
22975016 AATGGAGAAA
*
22975026 GAAAAAAAAGAGAAAGAAAATGAT
1 GAAAAAAAAGAGAAAAAAAATGAT
22975050 GAAAACAAAAGA-AAAAAAAATG
1 GAAAA-AAAAGAGAAAAAAAATG
22975072 TGTCCATTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.74, C:0.02, G:0.17, T:0.07
Consensus pattern (24 bp):
GAAAAAAAAGAGAAAAAAAATGAT
Found at i:22976978 original size:47 final size:47
Alignment explanation
Indices: 22976924--22977688 Score: 1267
Period size: 47 Copynumber: 16.3 Consensus size: 47
22976914 TACGTGAAAG
*
22976924 TATATGTGATAAGGCCTAATGGCCGATCTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
22976971 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
22977018 TATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
22977067 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
22977114 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
22977160 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
22977205 TATAT-TGAT-A-G-CTAATGGCCGATGTGATGAATGTGAAAGTGATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TA
22977249 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
22977296 TATATGTGACAAGGACTAATGGCCGATGTGATGAAT-TGGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT-GAAAGTGTA
*
22977343 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
22977390 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
22977439 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
*
22977488 TATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
22977535 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
22977582 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * *** * * *
22977629 TATATGTGACAGGGCCGGGTGGCCAACGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
22977676 TAAATGTGATAAG
1 TATATGTGATAAG
22977689 TCCCGAAGGG
Statistics
Matches: 684, Mismatches: 20, Indels: 28
0.93 0.03 0.04
Matches are distributed among these distances:
41 30 0.04
42 1 0.00
43 1 0.00
44 9 0.01
45 9 0.01
46 48 0.07
47 414 0.61
48 31 0.05
49 141 0.21
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Done.