Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 79 of 221
Found at i:23383462 original size:34 final size:31
Alignment explanation
Indices: 23383398--23383479 Score: 101
Period size: 34 Copynumber: 2.5 Consensus size: 31
23383388 AAAAGTTAAA
**
23383398 AAAAATATTTTTCAAATGACTACAAATTTTG
1 AAAAATATTTTAAAAATGACTACAAATTTTG
23383429 TAAAAATATTTTAAAAGATGACTACAAATTTTTG
1 -AAAAATATTTTAAAA-ATGACTACAAA-TTTTG
*
23383463 AATCAATATTTTAAAAA
1 AA-AAATATTTTAAAAA
23383480 ATATAGATTG
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
32 13 0.30
33 14 0.32
34 17 0.39
ACGTcount: A:0.49, C:0.07, G:0.06, T:0.38
Consensus pattern (31 bp):
AAAAATATTTTAAAAATGACTACAAATTTTG
Found at i:23384742 original size:27 final size:30
Alignment explanation
Indices: 23384692--23384751 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 30
23384682 TCATAAAAGT
* *
23384692 TATATATATATTATATAAAGAAAT-ATGTA
1 TATAAATATACTATATAAAGAAATCATGTA
23384721 TATAAATATACTATAT-AA-AAATGCATGTA
1 TATAAATATACTATATAAAGAAAT-CATGTA
23384750 TA
1 TA
23384752 AATATAGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 4 0.15
28 2 0.07
29 21 0.78
ACGTcount: A:0.52, C:0.03, G:0.07, T:0.38
Consensus pattern (30 bp):
TATAAATATACTATATAAAGAAATCATGTA
Found at i:23386807 original size:13 final size:13
Alignment explanation
Indices: 23386789--23386813 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23386779 ATTATTAATA
23386789 TTATTTTGTGTGT
1 TTATTTTGTGTGT
23386802 TTATTTTGTGTG
1 TTATTTTGTGTG
23386814 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:23388517 original size:41 final size:41
Alignment explanation
Indices: 23388472--23388629 Score: 237
Period size: 41 Copynumber: 3.9 Consensus size: 41
23388462 TATTCAGACA
* *
23388472 ATACGTCTAGTAGGCTAAGTGCCGGTGAATTGAATCGGACT
1 ATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAATCGGACT
* *
23388513 ATACGTCTAGCAGGCTAAATGCCGGTGAATTGAATCGGACT
1 ATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAATCGGACT
23388554 ATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGG-CT
1 ATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAATC-GGACT
* * *
23388595 ACAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAAT
1 ATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAAT
23388630 TAAACTATAA
Statistics
Matches: 109, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
41 107 0.98
42 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (41 bp):
ATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAATCGGACT
Found at i:23388642 original size:41 final size:41
Alignment explanation
Indices: 23388478--23388664 Score: 214
Period size: 41 Copynumber: 4.6 Consensus size: 41
23388468 GACAATACGT
* * * * *
23388478 CTAGTAGGCTAAGTGCCGGTGAATTGAATCGGACTATACGT
1 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGACTATAAGC
* * * * *
23388519 CTAGCAGGCTAAATGCCGGTGAATTGAATCGGACTATACGT
1 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGACTATAAGC
* *
23388560 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTACAAGC
1 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGACTATAAGC
* *
23388601 CTAGCAGGCTAAGTGCCGGTGAACTGAATTAAACTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGACTATAAGC
* *
23388642 CTATCAGG-TGAAGTGCCAGTGAA
1 CTAGCAGGCT-AAGTGCCGGTGAA
23388665 TCTGTTTAAA
Statistics
Matches: 130, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
40 1 0.01
41 129 0.99
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGACTATAAGC
Found at i:23391095 original size:23 final size:23
Alignment explanation
Indices: 23391059--23391102 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
23391049 GAAAAATATT
23391059 AAATATATA-TTTTTTATTTTTA
1 AAATATATATTTTTTTATTTTTA
23391081 AAATATAATATTTTTTTATTTT
1 AAATAT-ATATTTTTTTATTTT
23391103 AAGTTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 6 0.30
23 3 0.15
24 11 0.55
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (23 bp):
AAATATATATTTTTTTATTTTTA
Found at i:23391232 original size:59 final size:59
Alignment explanation
Indices: 23391166--23391344 Score: 250
Period size: 68 Copynumber: 2.9 Consensus size: 59
23391156 TCAAGTTTGT
*
23391166 TTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATAATTTGATAAA
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATAATTTGATAAA
23391225 TTTACTAATCAAATGTTAGATTTTATTACAACAATTCATACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATT------A--CA-ACAATTAATACAATTAATAATTTGAT
23391290 AAA
57 AAA
* *
23391293 TTTACTAATCAAATGTTAGTTTTTATTACAACAATTAATACAATTAACAATT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATAATT
23391345 AATAATTTGA
Statistics
Matches: 108, Mismatches: 3, Indels: 18
0.84 0.02 0.14
Matches are distributed among these distances:
59 47 0.44
60 2 0.02
62 1 0.01
65 1 0.01
67 2 0.02
68 55 0.51
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (59 bp):
TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATAATTTGATAAA
Found at i:23391268 original size:68 final size:68
Alignment explanation
Indices: 23391196--23391366 Score: 310
Period size: 68 Copynumber: 2.5 Consensus size: 68
23391186 TTTTGTTACA
23391196 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGATTTTATTACAACAATT
1 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGATTTTATTACAACAATT
*
23391261 CAT
66 AAT
*
23391264 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGTTTTTATTACAACAATT
1 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGATTTTATTACAACAATT
23391329 AAT
66 AAT
23391332 ACAATT-A-ACAATTAATAATTTGATAAATTTACTAA
1 ACAATTAATACAATTAATAATTTGATAAATTTACTAA
23391367 CAATTAATTT
Statistics
Matches: 101, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
66 28 0.28
67 1 0.01
68 72 0.71
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (68 bp):
ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGATTTTATTACAACAATT
AAT
Found at i:23391378 original size:16 final size:16
Alignment explanation
Indices: 23391359--23391396 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
23391349 ATTTGATAAA
*
23391359 TTTACTAACAATTAAT
1 TTTAATAACAATTAAT
*
23391375 TTTAATAACAATTAGT
1 TTTAATAACAATTAAT
23391391 TTTAAT
1 TTTAAT
23391397 TTTATTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.42, C:0.08, G:0.03, T:0.47
Consensus pattern (16 bp):
TTTAATAACAATTAAT
Found at i:23391397 original size:22 final size:23
Alignment explanation
Indices: 23391370--23391431 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
23391360 TTACTAACAA
* * *
23391370 TTAATTTTAAT-AACAATTAGTT
1 TTAATTTTAATAAAAAAATAATT
*
23391392 TTAATTTTATTAAAAAAATAATT
1 TTAATTTTAATAAAAAAATAATT
*
23391415 TTAATTTTAATTAAAAA
1 TTAATTTTAATAAAAAA
23391432 CGGGCCAGGC
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 10 0.30
23 23 0.70
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (23 bp):
TTAATTTTAATAAAAAAATAATT
Found at i:23394416 original size:29 final size:28
Alignment explanation
Indices: 23394350--23394407 Score: 91
Period size: 29 Copynumber: 2.1 Consensus size: 28
23394340 TATGTAAATT
*
23394350 ATCGGATGTAATTATTTGAAATGTTACAT
1 ATCGGATGTAATTATTTGAAA-GTTACAC
23394379 ATCGGATGTAATTATTTGAAA-TTACAC
1 ATCGGATGTAATTATTTGAAAGTTACAC
23394406 AT
1 AT
23394408 GTGACATGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
27 7 0.25
29 21 0.75
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.40
Consensus pattern (28 bp):
ATCGGATGTAATTATTTGAAAGTTACAC
Found at i:23402097 original size:32 final size:31
Alignment explanation
Indices: 23402034--23402110 Score: 91
Period size: 32 Copynumber: 2.5 Consensus size: 31
23402024 TTTGAAGAGT
** **
23402034 CTTTGGTGTGAACACTTGGATTTGGACGGTC
1 CTTTGGTGTGAACACCAGGAAGTGGACGGTC
*
23402065 CTTTGGGTGTGAACACCAGGAAGTGGATGGTC
1 CTTT-GGTGTGAACACCAGGAAGTGGACGGTC
*
23402097 CATTGGTGTGAACA
1 CTTTGGTGTGAACA
23402111 AAAATAGTTG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
31 14 0.36
32 25 0.64
ACGTcount: A:0.21, C:0.16, G:0.34, T:0.30
Consensus pattern (31 bp):
CTTTGGTGTGAACACCAGGAAGTGGACGGTC
Found at i:23402808 original size:42 final size:42
Alignment explanation
Indices: 23402751--23403302 Score: 763
Period size: 42 Copynumber: 13.3 Consensus size: 42
23402741 CTTCATATAG
* *
23402751 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGACTTTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * * *
23402793 AATACAATGAAAAGTAAACGAACCTCCACACTTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* *
23402835 AATGCAATGAAAAGTCAATGGACCTCCACACCTGGGTCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
*
23402877 AATGCAATGAAAAGTGAATGGACCTCCACACCTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * ** *
23402919 AATGTAATGAAAAGCAAATGGACCTCCACACCTGGGTTTTTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * *
23402961 AATACAATAAAAAGTAAATGAACCTCCACACCTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * *
23403003 AATGCAATGAAAAGTGAATGGAACTCCACACCTGAGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* *
23403045 AATGCAATAAAAAGTAAATGGACATCCACACCTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
*
23403087 AATGCAATGAAAAGTAAATGGAACTCCACACCTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* *
23403129 AATGCAATAAAAAGTAAATGGACCTCCACACCTAGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* *
23403171 AATGCAAT-AAAAGTAATTGGACCTCCACACCT----CTTTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * * * *
23403208 AATGCAATAAAAATTAAATGGACCTCTACGCTTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
*
23403250 AATGCAATGAAAAGTAAATAGACCTCCACACCTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
*
23403292 AATGCAGTGAA
1 AATGCAATGAA
23403303 TGTTTTCCTT
Statistics
Matches: 445, Mismatches: 60, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
37 12 0.03
38 19 0.04
41 23 0.05
42 391 0.88
ACGTcount: A:0.38, C:0.24, G:0.17, T:0.21
Consensus pattern (42 bp):
AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
Found at i:23404998 original size:43 final size:42
Alignment explanation
Indices: 23404944--23405080 Score: 116
Period size: 42 Copynumber: 3.2 Consensus size: 42
23404934 CAGATGTGGC
* * * * *
23404944 CTTACATGTAATGAAATAACGATGTCACTGTCCCAGACAGGGT
1 CTTACACGTAATCAAAT-ACGACGCCAATGTCCCAGACAGGGT
* * *
23404987 CTTACACGTAATCATATATGACGCCAATGTCCCAGACATGGT
1 CTTACACGTAATCAAATACGACGCCAATGTCCCAGACAGGGT
* * *
23405029 CTTACACGTAAATCTTAAA-CCGATGCCAACGTCCCAGAC-GTGGT
1 CTTACACGT-AATC--AAATACGACGCCAATGTCCCAGACAG-GGT
23405073 CTTACACG
1 CTTACACG
23405081 ATATCACATT
Statistics
Matches: 76, Mismatches: 14, Indels: 7
0.78 0.14 0.07
Matches are distributed among these distances:
42 29 0.38
43 18 0.24
44 27 0.36
45 2 0.03
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (42 bp):
CTTACACGTAATCAAATACGACGCCAATGTCCCAGACAGGGT
Found at i:23405067 original size:44 final size:42
Alignment explanation
Indices: 23404973--23405080 Score: 135
Period size: 44 Copynumber: 2.5 Consensus size: 42
23404963 CGATGTCACT
* * * *
23404973 GTCCCAGACAGGGTCTTACACGTAATCATATATGACGCCAAT
1 GTCCCAGACATGGTCTTACACGTAATCATAAACGACGCCAAC
* *
23405015 GTCCCAGACATGGTCTTACACGTAAATCTTAAACCGATGCCAAC
1 GTCCCAGACATGGTCTTACACGT-AATCATAAA-CGACGCCAAC
*
23405059 GTCCCAGACGTGGTCTTACACG
1 GTCCCAGACATGGTCTTACACG
23405081 ATATCACATT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 22 0.39
43 7 0.12
44 28 0.49
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGTAATCATAAACGACGCCAAC
Found at i:23406608 original size:13 final size:12
Alignment explanation
Indices: 23406584--23406636 Score: 79
Period size: 12 Copynumber: 4.3 Consensus size: 12
23406574 TCTTGCTTTC
23406584 TCTTTATTTTTT
1 TCTTTATTTTTT
*
23406596 GCTTTATTTTTT
1 TCTTTATTTTTT
23406608 TCTTTATTATTTT
1 TCTTTATT-TTTT
*
23406621 TCTTTCTTTTTT
1 TCTTTATTTTTT
23406633 TCTT
1 TCTT
23406637 AATATAAGCA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
12 26 0.70
13 11 0.30
ACGTcount: A:0.08, C:0.11, G:0.02, T:0.79
Consensus pattern (12 bp):
TCTTTATTTTTT
Found at i:23406614 original size:24 final size:25
Alignment explanation
Indices: 23406584--23406636 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
23406574 TCTTGCTTTC
23406584 TCTTTATT-TTTTGCTTTATTTTTT
1 TCTTTATTATTTTGCTTTATTTTTT
* *
23406608 TCTTTATTATTTTTCTTTCTTTTTT
1 TCTTTATTATTTTGCTTTATTTTTT
23406633 TCTT
1 TCTT
23406637 AATATAAGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 8 0.31
25 18 0.69
ACGTcount: A:0.08, C:0.11, G:0.02, T:0.79
Consensus pattern (25 bp):
TCTTTATTATTTTGCTTTATTTTTT
Found at i:23420314 original size:23 final size:23
Alignment explanation
Indices: 23420284--23420330 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
23420274 AGAATGCTTG
23420284 TGGTTGTAGTAGTTTTTTCTTTT
1 TGGTTGTAGTAGTTTTTTCTTTT
23420307 TGGTTGTAGTAGTTTTTTCTTTT
1 TGGTTGTAGTAGTTTTTTCTTTT
23420330 T
1 T
23420331 TACCTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.09, C:0.04, G:0.21, T:0.66
Consensus pattern (23 bp):
TGGTTGTAGTAGTTTTTTCTTTT
Found at i:23424550 original size:40 final size:40
Alignment explanation
Indices: 23424468--23424729 Score: 228
Period size: 40 Copynumber: 6.6 Consensus size: 40
23424458 TTGAATGCTG
* * *
23424468 TCCGGGCTAAGT-CCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGA-T-AATAAA
* * * *
23424507 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGATAATAAA
* * **
23424547 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGATAATAAA
* * **
23424587 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGATAATAAA
* * * **
23424627 TCCGGGTTAAGTCCCGAAGGCATTCGTGTGAGTTGTTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGATAATAAA
* * * *
23424667 TCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGATAATAAA
* *
23424706 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
23424730 TGAACGAGGA
Statistics
Matches: 202, Mismatches: 17, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 45 0.22
40 147 0.73
41 9 0.04
42 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGATAATAAA
Found at i:23424604 original size:80 final size:80
Alignment explanation
Indices: 23424520--23424729 Score: 314
Period size: 80 Copynumber: 2.6 Consensus size: 80
23424510 GGACTAAGAT
*
23424520 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
23424585 AATCCGGGTTAAGTC
66 AATCCGGGTTAAGTC
* * ** *
23424600 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGTGAGTTGTTA
1 CCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
23424665 AATCCGGGTTAAGTC
66 AATCCGGGTTAAGTC
* * * * *
23424680 CCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 CCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
23424730 TGAACGAGGA
Statistics
Matches: 115, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
79 34 0.30
80 81 0.70
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (80 bp):
CCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
AATCCGGGTTAAGTC
Found at i:23432502 original size:40 final size:40
Alignment explanation
Indices: 23432419--23432641 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
23432409 TTGAATGCTG
* * * * * *
23432419 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
23432459 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
**
23432499 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
23432539 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
23432579 TCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
23432618 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
23432642 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 34 0.21
40 119 0.74
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:23432661 original size:79 final size:80
Alignment explanation
Indices: 23432494--23432676 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
23432484 GTGCGAGATA
** * *
23432494 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
23432559 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * *
23432574 TTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
23432638 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
23432653 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
23432677 TACGTGATTT
Statistics
Matches: 88, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
78 15 0.17
79 45 0.51
80 28 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:23436219 original size:21 final size:21
Alignment explanation
Indices: 23436193--23436232 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
23436183 ATTGCAACGA
23436193 TGTCGTAACATAAGGGTTCTG
1 TGTCGTAACATAAGGGTTCTG
*
23436214 TGTCGTGACATAAGGGTTC
1 TGTCGTAACATAAGGGTTC
23436233 AATGTCGCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.33
Consensus pattern (21 bp):
TGTCGTAACATAAGGGTTCTG
Found at i:23436238 original size:21 final size:21
Alignment explanation
Indices: 23436192--23436239 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
23436182 AATTGCAACG
*
23436192 ATGTCGTAACATAAGGGTTCT
1 ATGTCGTAACATAAGGGTTCA
* *
23436213 GTGTCGTGACATAAGGGTTCA
1 ATGTCGTAACATAAGGGTTCA
23436234 ATGTCG
1 ATGTCG
23436240 CGAGACACTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (21 bp):
ATGTCGTAACATAAGGGTTCA
Found at i:23443170 original size:16 final size:16
Alignment explanation
Indices: 23443146--23443182 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
23443136 GGATAACTAA
*
23443146 CCAAGTTTAGAACCCG
1 CCAAATTTAGAACCCG
*
23443162 CCAAATTTAGAACCCT
1 CCAAATTTAGAACCCG
23443178 CCAAA
1 CCAAA
23443183 ATTGGGTGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.38, C:0.32, G:0.11, T:0.19
Consensus pattern (16 bp):
CCAAATTTAGAACCCG
Found at i:23443395 original size:41 final size:41
Alignment explanation
Indices: 23443338--23443421 Score: 141
Period size: 41 Copynumber: 2.0 Consensus size: 41
23443328 ACCATAAAAT
* *
23443338 TTCTGAACGTTACACTTACCTTCTTATGACAGATGTCAACC
1 TTCTGAACGTTACACTTACCTCCTTATGACAGATGCCAACC
*
23443379 TTCTGAACGTTACACTTTCCTCCTTATGACAGATGCCAACC
1 TTCTGAACGTTACACTTACCTCCTTATGACAGATGCCAACC
23443420 TT
1 TT
23443422 ACTTTGGAGA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.35
Consensus pattern (41 bp):
TTCTGAACGTTACACTTACCTCCTTATGACAGATGCCAACC
Found at i:23450128 original size:21 final size:21
Alignment explanation
Indices: 23450102--23450141 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
23450092 ATCATGACAA
23450102 TTTCTTTTTCTTTTCTTTTCT
1 TTTCTTTTTCTTTTCTTTTCT
* *
23450123 TTTCTTTTTTTTTTTTTTT
1 TTTCTTTTTCTTTTCTTTT
23450142 AGGGGGGAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (21 bp):
TTTCTTTTTCTTTTCTTTTCT
Found at i:23450141 original size:5 final size:5
Alignment explanation
Indices: 23450102--23450138 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
23450092 ATCATGACAA
23450102 TTTCTT TTTCT TTTCT TTTCT TTTCT TTT-T TTT-T TTT
1 TTTC-T TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTT
23450139 TTTAGGGGGG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 8 0.26
5 19 0.61
6 4 0.13
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (5 bp):
TTTCT
Found at i:23454818 original size:17 final size:17
Alignment explanation
Indices: 23454796--23454829 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
23454786 GACTTATTTG
23454796 AACCATGAAGCCAAGTT
1 AACCATGAAGCCAAGTT
23454813 AACCATGAAGCCAAGTT
1 AACCATGAAGCCAAGTT
23454830 CAGGTACCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.24, G:0.18, T:0.18
Consensus pattern (17 bp):
AACCATGAAGCCAAGTT
Found at i:23459563 original size:20 final size:20
Alignment explanation
Indices: 23459538--23459577 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
23459528 TTGAGTCACA
23459538 TTTATATACAGTGCAAACAG
1 TTTATATACAGTGCAAACAG
23459558 TTTATATACAGTGCAAACAG
1 TTTATATACAGTGCAAACAG
23459578 ATAATTGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (20 bp):
TTTATATACAGTGCAAACAG
Found at i:23463254 original size:24 final size:24
Alignment explanation
Indices: 23463227--23463274 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
23463217 TCTTTTTTCA
23463227 GTTCACTCTGGTTTTAGACTAGGG
1 GTTCACTCTGGTTTTAGACTAGGG
* * *
23463251 GTTCGCTCTTGTTTTAGAGTAGGG
1 GTTCACTCTGGTTTTAGACTAGGG
23463275 TTAAGTTTGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.15, C:0.15, G:0.31, T:0.40
Consensus pattern (24 bp):
GTTCACTCTGGTTTTAGACTAGGG
Found at i:23468455 original size:27 final size:27
Alignment explanation
Indices: 23468424--23468475 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
23468414 GTACGATGGG
23468424 TGTTAAATGTATATGAATTGACTAAAA
1 TGTTAAATGTATATGAATTGACTAAAA
23468451 TGTTAAATGTATATGAATTGACTAA
1 TGTTAAATGTATATGAATTGACTAA
23468476 GTAATCAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.42, C:0.04, G:0.15, T:0.38
Consensus pattern (27 bp):
TGTTAAATGTATATGAATTGACTAAAA
Found at i:23469974 original size:16 final size:16
Alignment explanation
Indices: 23469953--23470008 Score: 85
Period size: 16 Copynumber: 3.5 Consensus size: 16
23469943 CGTTTGGTTC
23469953 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
**
23469969 GCTGTAATTAAATAGA
1 GCTGTAATGGAATAGA
23469985 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
*
23470001 ACTGTAAT
1 GCTGTAAT
23470009 AGTAATTCAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:23470041 original size:45 final size:44
Alignment explanation
Indices: 23469990--23470081 Score: 132
Period size: 45 Copynumber: 2.1 Consensus size: 44
23469980 ATAGAGCTGT
*
23469990 AATGGAATAGAACTGTAATAGTAATTCA-ATTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGT-ATTCATA-TGTTTGATTGAATGG
* *
23470035 AATGGAATAGAATTGTAATAGTATTCTTATGTTTGATTGAATGG
1 AATGGAATAGAACTGTAATAGTATTCATATGTTTGATTGAATGG
23470079 AAT
1 AAT
23470082 TATGTTGTAA
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
44 21 0.49
45 22 0.51
ACGTcount: A:0.36, C:0.03, G:0.23, T:0.38
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTCATATGTTTGATTGAATGG
Found at i:23470207 original size:14 final size:15
Alignment explanation
Indices: 23470190--23470218 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
23470180 AATAAGATTA
23470190 TTAAT-ATAAATAAT
1 TTAATAATAAATAAT
23470204 TTAATAATAAATAAT
1 TTAATAATAAATAAT
23470219 AAATAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TTAATAATAAATAAT
Found at i:23470305 original size:55 final size:58
Alignment explanation
Indices: 23470173--23470307 Score: 145
Period size: 55 Copynumber: 2.3 Consensus size: 58
23470163 TATTGTTATT
*
23470173 AAATTTTAATA-AGATTATTAATATAAATAATTTAATAATAAATAATAAATAATTTAACC
1 AAATTTTAATATA-ATTATTAATAT-AATAATTTAATAATAAATAATAAATAATTTAACA
* * * * *
23470232 ATATTTTAACATTTATTATTAA-AT-ATAATTTAAT-A-AAATAATATATAATTTAATA
1 AAATTTTAATA-TAATTATTAATATAATAATTTAATAATAAATAATAAATAATTTAACA
23470287 AAATTCTTAATATAATTATTA
1 AAATT-TTAATATAATTATTA
23470308 TTTTATGAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
55 29 0.45
56 6 0.09
57 10 0.16
59 11 0.17
60 8 0.12
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.44
Consensus pattern (58 bp):
AAATTTTAATATAATTATTAATATAATAATTTAATAATAAATAATAAATAATTTAACA
Found at i:23470369 original size:23 final size:21
Alignment explanation
Indices: 23470326--23470369 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
23470316 ATTAAAAATC
* *
23470326 ATAATATATAATACTATAAAA
1 ATAATATATAATAATAAAAAA
23470347 ATAATATATAATTTAATAAAAAA
1 ATAATATATAA--TAATAAAAAA
23470370 TTCTTAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 11 0.58
23 8 0.42
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (21 bp):
ATAATATATAATAATAAAAAA
Found at i:23475657 original size:46 final size:45
Alignment explanation
Indices: 23475549--23475864 Score: 321
Period size: 46 Copynumber: 7.6 Consensus size: 45
23475539 TACGTATGAT
23475549 CACTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCTAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTAC
*
23475592 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTGAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AGGCTAC
* *
23475638 CACTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AGGCTAC
23475684 CACTTATCACTTTGTCACTTGATCAGATAA--GTA--TA----A-
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTAC
*
23475720 CACTTATCACTTTATCACTTGATCAGATAA--GTA--TA----A-
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTAC
*
23475756 CACTTATCACTTTTTCACTTGATCAGATAA--GTA--TA-G----
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTAC
* *
23475792 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AGGCTAC
* *
23475838 CACTTATCACTTTATCTCTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
23475865 AGTACTCAAA
Statistics
Matches: 249, Mismatches: 10, Indels: 25
0.88 0.04 0.09
Matches are distributed among these distances:
36 99 0.40
37 1 0.00
38 3 0.01
40 1 0.00
41 2 0.01
42 2 0.01
43 10 0.04
44 7 0.03
45 21 0.08
46 103 0.41
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (45 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTAC
Found at i:23475724 original size:36 final size:36
Alignment explanation
Indices: 23475684--23475823 Score: 253
Period size: 36 Copynumber: 3.9 Consensus size: 36
23475674 CTAAAGCTAC
*
23475684 CACTTATCACTTTGTCACTTGATCAGATAAGTATAA
1 CACTTATCACTTTTTCACTTGATCAGATAAGTATAA
*
23475720 CACTTATCACTTTATCACTTGATCAGATAAGTATAA
1 CACTTATCACTTTTTCACTTGATCAGATAAGTATAA
*
23475756 CACTTATCACTTTTTCACTTGATCAGATAAGTATAG
1 CACTTATCACTTTTTCACTTGATCAGATAAGTATAA
23475792 CACTTATCACTTTTTCACTTGATCAGATAAGT
1 CACTTATCACTTTTTCACTTGATCAGATAAGT
23475824 GTAGCTAAAG
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 101 1.00
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.38
Consensus pattern (36 bp):
CACTTATCACTTTTTCACTTGATCAGATAAGTATAA
Found at i:23478855 original size:42 final size:42
Alignment explanation
Indices: 23478751--23478859 Score: 134
Period size: 42 Copynumber: 2.6 Consensus size: 42
23478741 CGTACAATGC
*
23478751 CAACGTCCCTGACGTGGTCTTACATGTAATCACATATCGATG
1 CAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATG
* *
23478793 CCACTGTCCCAGATAG-GGTCTTACATGTAA-CACA-AGTCGATG
1 CAAC-GTCCCAGA-CGTGGTCTTACATGTAATCACATA-TCGATG
23478835 TCAACGTCCCAGACGTGGTCTTACA
1 -CAACGTCCCAGACGTGGTCTTACA
23478860 CGATAACATA
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
41 2 0.04
42 30 0.53
43 24 0.42
44 1 0.02
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.26
Consensus pattern (42 bp):
CAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATG
Found at i:23487649 original size:19 final size:18
Alignment explanation
Indices: 23487625--23487736 Score: 62
Period size: 20 Copynumber: 5.8 Consensus size: 18
23487615 AATATAAAAA
23487625 ATAAAAATTTATAAAATTT
1 ATAAAAA-TTATAAAATTT
*
23487644 ATAAAAATTATTAAATTTT
1 ATAAAAATTA-TAAAATTT
* * **
23487663 ATTGAAAATTAGAATTTTTTT
1 A-TAAAAATTATAA--AATTT
* **
23487684 ATAAAAAATAGTAAAAAAAT
1 ATAAAAATTA-T-AAAATTT
* *
23487704 AAAAAAATTGTAAAATTT
1 ATAAAAATTATAAAATTT
*
23487722 ATAAAAATCATAAAA
1 ATAAAAATTATAAAA
23487737 AACTATAAAA
Statistics
Matches: 68, Mismatches: 19, Indels: 13
0.68 0.19 0.13
Matches are distributed among these distances:
18 20 0.29
19 18 0.26
20 23 0.34
21 5 0.07
22 2 0.03
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.37
Consensus pattern (18 bp):
ATAAAAATTATAAAATTT
Found at i:23487985 original size:21 final size:21
Alignment explanation
Indices: 23487930--23487993 Score: 55
Period size: 21 Copynumber: 3.1 Consensus size: 21
23487920 GATACGATAA
*
23487930 TTTTTATAATTTT-TCTTACAA
1 TTTTTATAATTTTCT-TTACAC
* *
23487951 ATTTTGT-A-TTTCTTTACAC
1 TTTTTATAATTTTCTTTACAC
23487970 TTTTTATAATTTTC-TTACAAC
1 TTTTTATAATTTTCTTTAC-AC
23487991 TTT
1 TTT
23487994 ATAAAATTGT
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
19 13 0.38
20 7 0.21
21 14 0.41
ACGTcount: A:0.25, C:0.12, G:0.02, T:0.61
Consensus pattern (21 bp):
TTTTTATAATTTTCTTTACAC
Found at i:23488001 original size:21 final size:21
Alignment explanation
Indices: 23487959--23488001 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
23487949 AAATTTTGTA
* *
23487959 TTTCTTTACACTTTTTATAAT
1 TTTCTTTACACTTTATAAAAT
23487980 TTTC-TTACAACTTTATAAAAT
1 TTTCTTTAC-ACTTTATAAAAT
23488001 T
1 T
23488002 GTATAATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.30, C:0.14, G:0.00, T:0.56
Consensus pattern (21 bp):
TTTCTTTACACTTTATAAAAT
Found at i:23488022 original size:10 final size:9
Alignment explanation
Indices: 23488009--23488067 Score: 52
Period size: 10 Copynumber: 6.4 Consensus size: 9
23487999 ATTGTATAAT
23488009 TATTTTTCTA
1 TATTTTT-TA
23488019 TA-TTTTTA
1 TATTTTTTA
23488027 TA-TTTTTA
1 TATTTTTTA
23488035 TAATTTTTTA
1 T-ATTTTTTA
*
23488045 TGATTTTTAA
1 T-ATTTTTTA
23488055 TAATTTTTT-
1 T-ATTTTTTA
23488064 TATT
1 TATT
23488068 AAAATTTAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
8 14 0.33
9 6 0.14
10 23 0.53
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (9 bp):
TATTTTTTA
Found at i:23488027 original size:16 final size:17
Alignment explanation
Indices: 23488009--23488067 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 17
23487999 ATTGTATAAT
*
23488009 TATTTTTCTATATTTTTA
1 TATTTTTATA-ATTTTTA
23488027 TATTTTTATAATTTTTTA
1 TATTTTTATAA-TTTTTA
*
23488045 TGATTTTTAATAATTTTTT
1 T-ATTTTT-ATAATTTTTA
23488064 TATT
1 TATT
23488068 AAAATTTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
17 1 0.03
18 19 0.53
19 12 0.33
20 4 0.11
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (17 bp):
TATTTTTATAATTTTTA
Found at i:23488028 original size:8 final size:8
Alignment explanation
Indices: 23488008--23488067 Score: 50
Period size: 8 Copynumber: 6.9 Consensus size: 8
23487998 AATTGTATAA
23488008 TTAT-TTT
1 TTATATTT
23488015 TCTATATTT
1 T-TATATTT
23488024 TTATATTT
1 TTATATTT
23488032 TTATAATTTT
1 TTAT-A-TTT
23488042 TTATGATTT
1 TTAT-ATTT
23488051 TTAATAATTT
1 TT-AT-ATTT
*
23488061 TTTTATT
1 TTATATT
23488068 AAAATTTAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
7 1 0.02
8 17 0.38
9 11 0.24
10 16 0.36
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.72
Consensus pattern (8 bp):
TTATATTT
Found at i:23488057 original size:20 final size:18
Alignment explanation
Indices: 23488021--23488067 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
23488011 TTTTTCTATA
23488021 TTTTTATATTTTTATAAT
1 TTTTTATATTTTTATAAT
23488039 TTTTTATGATTTTTAATAAT
1 TTTTTAT-ATTTTT-ATAAT
23488059 TTTTT-TATT
1 TTTTTATATT
23488068 AAAATTTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 10 0.37
19 7 0.26
20 10 0.37
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (18 bp):
TTTTTATATTTTTATAAT
Found at i:23504356 original size:11 final size:11
Alignment explanation
Indices: 23504340--23504364 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
23504330 TTTATATAAC
23504340 CAAAAAAAAAA
1 CAAAAAAAAAA
23504351 CAAAAAAAAAA
1 CAAAAAAAAAA
23504362 CAA
1 CAA
23504365 TAGAAATGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (11 bp):
CAAAAAAAAAA
Found at i:23506716 original size:13 final size:13
Alignment explanation
Indices: 23506698--23506727 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
23506688 CAATCAGCTA
23506698 AATTCAGAAAAAC
1 AATTCAGAAAAAC
*
23506711 AATTCAGAAAAAT
1 AATTCAGAAAAAC
23506724 AATT
1 AATT
23506728 ACATGACAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.60, C:0.10, G:0.07, T:0.23
Consensus pattern (13 bp):
AATTCAGAAAAAC
Found at i:23510710 original size:20 final size:20
Alignment explanation
Indices: 23510598--23510714 Score: 85
Period size: 20 Copynumber: 5.9 Consensus size: 20
23510588 GATGTGTAAT
* *
23510598 AGAGGCACCAAAGTGTAGAC
1 AGAGGCACCAAAGTGCAAAC
* * *
23510618 AGGGGCA-AAAATGTGCAATC
1 AGAGGCACCAAA-GTGCAAAC
** *
23510638 A-AGGCACCGTAGAGCAAAC
1 AGAGGCACCAAAGTGCAAAC
* * *
23510657 AGAGACACCAAAGTGTATAC
1 AGAGGCACCAAAGTGCAAAC
***
23510677 AGAGGCATTGAAGTGCAAAC
1 AGAGGCACCAAAGTGCAAAC
23510697 AGAGGCACCAAAGTGCAA
1 AGAGGCACCAAAGTGCAA
23510715 TCTCATACAA
Statistics
Matches: 68, Mismatches: 26, Indels: 6
0.68 0.26 0.06
Matches are distributed among these distances:
19 14 0.21
20 54 0.79
ACGTcount: A:0.42, C:0.20, G:0.27, T:0.11
Consensus pattern (20 bp):
AGAGGCACCAAAGTGCAAAC
Found at i:23512740 original size:339 final size:338
Alignment explanation
Indices: 23512115--23512798 Score: 1305
Period size: 339 Copynumber: 2.0 Consensus size: 338
23512105 TGAACTTGAT
23512115 TATTCTTTCAATTAACAAAAATCATTAAATAAAATCAATGAAATTCTATATTTGACTTGTAAATA
1 TATT-TTTCAATTAACAAAAATCATTAAATAAAATCAATGAAATTCTATATTTGACTTGTAAATA
23512180 TTAAATAATAATATTTATTGACTCACTCGTCAAATTTGTGGCCCCGAAACTACCATTTTTGACAC
65 TTAAATAATAATATTTATTGACTCACTCGTCAAATTTGTGGCCCCGAAACTACCATTTTTGACAC
23512245 AACTAAAAAACGGGTTGTTACAATAGACTGACCCGAAGGCCGGCCCAAAAAGTGGGAGGTTTGGG
130 AACTAAAAAACGGGTTGTTACAATAGACTGACCCGAAGGCCGGCCCAAAAAGTGGGAGGTTTGGG
*
23512310 TAAAAATATAGGCTCAAAAATGGGCTTGAGCAAAAAAAATAAGGCTCGTTTAGAAAACGGGTTGA
195 TAAAAATATAGGCTCAAAAATGGGCTTGAGCAAAAAAAATAAGGCTCGTTTAGAAAACAGGTTGA
23512375 GCCTCAGGTAAGGCTTTTTTTGCCCGAACCCGGACTGGCCCAGTCTGAATATGCCAACTATTTTA
260 GCCTCAGGTAAGGCTTTTTTTGCCCGAACCCGGACTGGCCCAGTCTGAATATGCCAACTATTTTA
23512440 TTGCTATTTTTTTAC
325 TTGCTA-TTTTTTAC
23512455 TATTTTTCAATTAACAAAAATCATTAAATAAAATCAATGAAATTCTATATTTGACTTGTAAATAT
1 TATTTTTCAATTAACAAAAATCATTAAATAAAATCAATGAAATTCTATATTTGACTTGTAAATAT
23512520 TAAATAATAATATTTATTGACTCACTCGTCAAATTTGTGGCCCCGAAACTACCATTTTTGACACA
66 TAAATAATAATATTTATTGACTCACTCGTCAAATTTGTGGCCCCGAAACTACCATTTTTGACACA
23512585 ACTAAAAAACGGGTTGTTACAATAGACTGACCCGAAGGCCGGCCCAAAAAGTGGGAGGTTTGGGT
131 ACTAAAAAACGGGTTGTTACAATAGACTGACCCGAAGGCCGGCCCAAAAAGTGGGAGGTTTGGGT
*
23512650 AAAAATATAGGCTTAAAAATGGGCTTGAGCAAAAAAAATAAGGCTCGTTTAGAAAACAGGTTGAG
196 AAAAATATAGGCTCAAAAATGGGCTTGAGCAAAAAAAATAAGGCTCGTTTAGAAAACAGGTTGAG
* *
23512715 CCTCAGGTAAGGCTTTTTTTGCCCGAACCCGGCCTGGCCCTGTCTGAATATGCCAACTATTTTAT
261 CCTCAGGTAAGGCTTTTTTTGCCCGAACCCGGACTGGCCCAGTCTGAATATGCCAACTATTTTAT
23512780 TGCTATTTTTTAC
326 TGCTATTTTTTAC
*
23512793 TGTTTT
1 TATTTT
23512799 GTTGCTATTT
Statistics
Matches: 339, Mismatches: 5, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
338 13 0.04
339 322 0.95
340 4 0.01
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (338 bp):
TATTTTTCAATTAACAAAAATCATTAAATAAAATCAATGAAATTCTATATTTGACTTGTAAATAT
TAAATAATAATATTTATTGACTCACTCGTCAAATTTGTGGCCCCGAAACTACCATTTTTGACACA
ACTAAAAAACGGGTTGTTACAATAGACTGACCCGAAGGCCGGCCCAAAAAGTGGGAGGTTTGGGT
AAAAATATAGGCTCAAAAATGGGCTTGAGCAAAAAAAATAAGGCTCGTTTAGAAAACAGGTTGAG
CCTCAGGTAAGGCTTTTTTTGCCCGAACCCGGACTGGCCCAGTCTGAATATGCCAACTATTTTAT
TGCTATTTTTTAC
Found at i:23513897 original size:21 final size:21
Alignment explanation
Indices: 23513863--23513902 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
23513853 GGACTAAATC
* *
23513863 GAAAACATTTGAAACATTGAG
1 GAAAACATTAGAAAAATTGAG
*
23513884 GAAAACGTTAGAAAAATTG
1 GAAAACATTAGAAAAATTG
23513903 GGTTGCAGGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.50, C:0.07, G:0.20, T:0.23
Consensus pattern (21 bp):
GAAAACATTAGAAAAATTGAG
Found at i:23518244 original size:47 final size:47
Alignment explanation
Indices: 23518189--23518450 Score: 488
Period size: 47 Copynumber: 5.5 Consensus size: 47
23518179 ATGGCCTCAC
23518189 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
23518236 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
23518283 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
23518330 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
1 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
23518377 GGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAAT
1 GGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAAT
23518426 GGCCGATGTGATGAATGTGATAAGT
1 GGCCGATGTGATGAATGTGA-AAGT
23518451 CCCGAAGGGC
Statistics
Matches: 211, Mismatches: 1, Indels: 3
0.98 0.00 0.01
Matches are distributed among these distances:
47 166 0.79
49 41 0.19
50 4 0.02
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (47 bp):
GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
Found at i:23518624 original size:37 final size:37
Alignment explanation
Indices: 23518568--23518647 Score: 115
Period size: 37 Copynumber: 2.2 Consensus size: 37
23518558 CCGAGCTCTA
* * * *
23518568 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACTCGATAACTACGTGTGGAGATTATGTCCGGGT
*
23518605 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTACGTGTGGAGATTATGTCCGGGT
23518642 AAGACT
1 AAGACT
23518648 TCGTAATAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:23520557 original size:43 final size:43
Alignment explanation
Indices: 23520509--23520697 Score: 360
Period size: 43 Copynumber: 4.4 Consensus size: 43
23520499 TTGGTTTTCA
23520509 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
23520552 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
23520595 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
* *
23520638 ACACTAAGTGTGCGGGCAAGAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
23520681 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
23520698 TTGAAATGCA
Statistics
Matches: 143, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 143 1.00
ACGTcount: A:0.23, C:0.15, G:0.35, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:23520713 original size:29 final size:29
Alignment explanation
Indices: 23520679--23520752 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
23520669 GTTGTGAGAT
* *
23520679 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
23520708 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
23520737 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
23520753 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:23521186 original size:40 final size:40
Alignment explanation
Indices: 23521142--23521418 Score: 347
Period size: 40 Copynumber: 6.9 Consensus size: 40
23521132 GAGTTACTAA
**
23521142 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCAATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
23521182 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
23521222 ATCCGAGCTAAGTTCCGAAGAGCATTCATGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
23521262 ATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
23521302 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* ** * * * * *
23521342 ATCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * * *
23521382 ATCCGGGCTAGGTCCCAAAGAGTAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
23521419 CGTGTATTCG
Statistics
Matches: 209, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 209 1.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:23521276 original size:120 final size:119
Alignment explanation
Indices: 23521063--23521413 Score: 404
Period size: 120 Copynumber: 2.9 Consensus size: 119
23521053 TCGAATGATG
* *
23521063 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATATCCGG-CTAAGATCCGAAGAGCA
* * * *
23521125 TTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCAATGTA
63 TTCGTGCTAGTGA-TATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCAATGTA
* * *
23521183 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGAGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG-GCTAAGATCCGAAGAGCATT
* * * **
23521248 CATGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTA
65 CGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCAATGTA
* * *
23521303 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAA-ACCCCAAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG-GCTAAGA-TCCGAAGAGCAT
* * * * * *
23521367 TCGTGCTGGTGTTATATCCGGGCTAGGTCCCAAAGAGTAATCATGCT
64 TCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
23521414 GGTGACGTGT
Statistics
Matches: 196, Mismatches: 30, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
120 170 0.87
121 20 0.10
122 6 0.03
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGCTAAGATCCGAAGAGCATTC
GTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCAATGTA
Found at i:23521403 original size:80 final size:80
Alignment explanation
Indices: 23521063--23521418 Score: 378
Period size: 80 Copynumber: 4.5 Consensus size: 80
23521053 TCGAATGATG
** * *
23521063 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAG-GC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATATCCGGGCTAAG-TCCCGAAGAGC
* * * **
23521124 ATTGGTGCGAGTTACTAAA
63 ATTCGTGCTAGTGA-TGTA
** *
23521143 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCAATGTATCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
*
23521208 CATGCTAGTGATGTA
66 CGTGCTAGTGATGTA
* * *
23521223 TCCGAGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
23521288 CGTGCTAGTGATGTA
66 CGTGCTAGTGATGTA
* * * ** *
23521303 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCAAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
* * *
23521368 CGTGCTGGTGTTATA
66 CGTGCTAGTGATGTA
* * * * *
23521383 TCCGGGCTAGGTCCCAAAGAGTAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
23521419 CGTGTATTCG
Statistics
Matches: 235, Mismatches: 37, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
79 1 0.00
80 211 0.90
81 17 0.07
82 6 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
CGTGCTAGTGATGTA
Found at i:23524913 original size:44 final size:46
Alignment explanation
Indices: 23524846--23524969 Score: 211
Period size: 44 Copynumber: 2.8 Consensus size: 46
23524836 CTAATATGAT
23524846 CGATGTGATGAATGTGAAAGTGTATATATGTGATAATGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAA-GCCTAATGGC
23524893 C-ATGTGAT-AA-GTGAAAGTGTATATATGTGATAAGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGCCTAATGGC
23524936 CGATGTGATGAATGTGAAAG-GTATATATGTGATA
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATA
23524970 TNNNNNNNNN
Statistics
Matches: 74, Mismatches: 0, Indels: 8
0.90 0.00 0.10
Matches are distributed among these distances:
43 11 0.15
44 30 0.41
45 18 0.24
46 14 0.19
47 1 0.01
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.31
Consensus pattern (46 bp):
CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGCCTAATGGC
Found at i:23535053 original size:48 final size:48
Alignment explanation
Indices: 23534971--23535084 Score: 210
Period size: 48 Copynumber: 2.4 Consensus size: 48
23534961 NNNNNNNNNN
23534971 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGC
1 CGATGTGATGAATGTG-AAGTGTATATATATGTGATAGGGCCTAATGGC
23535020 CGATGTGATGAATGTGAAGTGTATATATATGTGATAGGGCCTAATGGC
1 CGATGTGATGAATGTGAAGTGTATATATATGTGATAGGGCCTAATGGC
*
23535068 CGATATGATGAATGTGA
1 CGATGTGATGAATGTGA
23535085 TAAGTCCCGA
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
48 48 0.75
49 16 0.25
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.31
Consensus pattern (48 bp):
CGATGTGATGAATGTGAAGTGTATATATATGTGATAGGGCCTAATGGC
Found at i:23535263 original size:37 final size:37
Alignment explanation
Indices: 23535207--23535286 Score: 115
Period size: 37 Copynumber: 2.2 Consensus size: 37
23535197 CCGAGCTCTA
* * * *
23535207 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACTCGATAACTACGTGTGGAGATTATGTCCGGGT
*
23535244 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTACGTGTGGAGATTATGTCCGGGT
23535281 AAGACT
1 AAGACT
23535287 TTGTAATAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:23546482 original size:30 final size:30
Alignment explanation
Indices: 23546429--23546519 Score: 112
Period size: 30 Copynumber: 3.0 Consensus size: 30
23546419 GGACGAGGAA
* *
23546429 CTTGATATAAAT-TTCAACTTGTGTGAGCATC
1 CTTGATAT-AATGTT-AGCTTGTGTGAGCAAC
23546460 CTTGATATAATGTTAGCTTGTGTGAGCAAC
1 CTTGATATAATGTTAGCTTGTGTGAGCAAC
* * *
23546490 CCTAATATAATGTTAGCTTATGTGAGCAAC
1 CTTGATATAATGTTAGCTTGTGTGAGCAAC
23546520 TTAATCACCT
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
30 44 0.81
31 10 0.19
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (30 bp):
CTTGATATAATGTTAGCTTGTGTGAGCAAC
Found at i:23559478 original size:40 final size:41
Alignment explanation
Indices: 23559434--23559532 Score: 164
Period size: 40 Copynumber: 2.4 Consensus size: 41
23559424 TATTGATGAT
*
23559434 TGCACATACGTGCCCCTGTTTGTACTTCGGTA-CCCCTGAA
1 TGCACATACGTGCCCCTGTTTGTACTTCGATATCCCCTGAA
*
23559474 TGCACATACGTGCCCCTGTTTGTACTTCGATATTCCCTGAA
1 TGCACATACGTGCCCCTGTTTGTACTTCGATATCCCCTGAA
*
23559515 TGCACTTACGTGCCCCTG
1 TGCACATACGTGCCCCTG
23559533 ATTATGCTCT
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
40 31 0.56
41 24 0.44
ACGTcount: A:0.17, C:0.32, G:0.19, T:0.31
Consensus pattern (41 bp):
TGCACATACGTGCCCCTGTTTGTACTTCGATATCCCCTGAA
Found at i:23559533 original size:20 final size:20
Alignment explanation
Indices: 23559434--23559533 Score: 60
Period size: 20 Copynumber: 5.0 Consensus size: 20
23559424 TATTGATGAT
* **
23559434 TGCACATACGTGCCCCTGTT
1 TGCACTTACGTGCCCCTGAA
* *
23559454 TGTACTT-CGGTACCCCTGAA
1 TGCACTTAC-GTGCCCCTGAA
* **
23559474 TGCACATACGTGCCCCTGTT
1 TGCACTTACGTGCCCCTGAA
* **
23559494 TGTACTT-CGATATTCCCTGAA
1 TGCACTTACG-T-GCCCCTGAA
23559515 TGCACTTACGTGCCCCTGA
1 TGCACTTACGTGCCCCTGA
23559534 TTATGCTCTG
Statistics
Matches: 56, Mismatches: 19, Indels: 10
0.66 0.22 0.12
Matches are distributed among these distances:
19 3 0.05
20 38 0.68
21 13 0.23
22 2 0.04
ACGTcount: A:0.18, C:0.32, G:0.19, T:0.31
Consensus pattern (20 bp):
TGCACTTACGTGCCCCTGAA
Found at i:23560691 original size:12 final size:12
Alignment explanation
Indices: 23560674--23560701 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
23560664 CACTTCTGAA
23560674 CCACTGCCCAAG
1 CCACTGCCCAAG
23560686 CCACTGCCCAAG
1 CCACTGCCCAAG
23560698 CCAC
1 CCAC
23560702 CGTCAACCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.25, C:0.54, G:0.14, T:0.07
Consensus pattern (12 bp):
CCACTGCCCAAG
Found at i:23562047 original size:14 final size:14
Alignment explanation
Indices: 23562028--23562066 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
23562018 TTAGGAAATT
23562028 AAATCAATTTTTAA
1 AAATCAATTTTTAA
* *
23562042 AAATCAATATTTGA
1 AAATCAATTTTTAA
*
23562056 AAATCAGTTTT
1 AAATCAATTTT
23562067 AAATACCTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41
Consensus pattern (14 bp):
AAATCAATTTTTAA
Found at i:23563258 original size:29 final size:29
Alignment explanation
Indices: 23563216--23563275 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
23563206 TGAAAGTACG
*
23563216 TATGTGGATATGTTATTCATGACATGTGA
1 TATGTGGATATGTTAGTCATGACATGTGA
* *
23563245 TATGTGGGTATGTTAGTCATGCCATGTGA
1 TATGTGGATATGTTAGTCATGACATGTGA
23563274 TA
1 TA
23563276 GTGTTTATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.25, C:0.08, G:0.27, T:0.40
Consensus pattern (29 bp):
TATGTGGATATGTTAGTCATGACATGTGA
Found at i:23568484 original size:112 final size:113
Alignment explanation
Indices: 23568345--23568571 Score: 404
Period size: 114 Copynumber: 2.0 Consensus size: 113
23568335 AAATTAGTCT
*
23568345 AAGTATGACCAAAAAAGT-AAAAGAAAAAAAATCAGATACGGAGATGAGAAAAACGTAGAGTTTA
1 AAGTATGACCAAAAAAGTAAAAAAAAAAAAAATCAGATACGGAGATGAGAAAAACGTAGAGTTTA
23568409 AGTTCCCTATGTGGATTAAGGAAAAAACAGAAGGAAAGGAAAAAAGAA
66 AGTTCCCTATGTGGATTAAGGAAAAAACAGAAGGAAAGGAAAAAAGAA
23568457 AAGTATGACC-AAAAAGTAAAAAAAAAAAAAAAATCAGATACGGAGATGAGAAAAACGTAGAGTT
1 AAGTATGACCAAAAAAGT--AAAAAAAAAAAAAATCAGATACGGAGATGAGAAAAACGTAGAGTT
*
23568521 TAAGTTCCCTATGTGGATTAAGGAAAAAACAGAAGGAAAGGAACAAAGAA
64 TAAGTTCCCTATGTGGATTAAGGAAAAAACAGAAGGAAAGGAAAAAAGAA
23568571 A
1 A
23568572 TTTACTAATA
Statistics
Matches: 110, Mismatches: 2, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
111 7 0.06
112 10 0.09
114 93 0.85
ACGTcount: A:0.55, C:0.08, G:0.22, T:0.15
Consensus pattern (113 bp):
AAGTATGACCAAAAAAGTAAAAAAAAAAAAAATCAGATACGGAGATGAGAAAAACGTAGAGTTTA
AGTTCCCTATGTGGATTAAGGAAAAAACAGAAGGAAAGGAAAAAAGAA
Found at i:23570907 original size:3 final size:3
Alignment explanation
Indices: 23570899--23570964 Score: 132
Period size: 3 Copynumber: 22.0 Consensus size: 3
23570889 CTCCATTAGT
23570899 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
23570947 TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC
23570965 GTCATTACAT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:23581161 original size:40 final size:40
Alignment explanation
Indices: 23581078--23581379 Score: 369
Period size: 40 Copynumber: 7.6 Consensus size: 40
23581068 TTGAATGCTG
* * * * * *
23581078 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
23581118 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
23581158 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
23581198 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
23581238 TCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
23581277 TCCGGGTTAAGTCTCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
23581317 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
23581356 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
23581380 TGAACGAGGA
Statistics
Matches: 237, Mismatches: 21, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
39 74 0.31
40 155 0.65
41 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:23581295 original size:119 final size:118
Alignment explanation
Indices: 23581078--23581379 Score: 374
Period size: 119 Copynumber: 2.5 Consensus size: 118
23581068 TTGAATGCTG
* * * * * *
23581078 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAG-TGAATATATCCGGATTAAGATCCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTG-ATAAATCCGGGTTAAG-TCCGAAGGCATT
*
23581142 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
63 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
23581198 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCGAAGGCATTCG
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTGATAAATCCGGGTTAAGTCCGAAGGCATTCG
* ** * *
23581263 TGCGAGTTGTTAAATCCGGGTTAAGTCTCGAAGGCATTCGTGCGAGTTGTTAAA
65 TGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * * * *
23581317 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTT-ACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGA-TAAATCCGGGTTAAGT-CCGAAGGCATT
23581380 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
118 21 0.13
119 95 0.60
120 37 0.23
121 6 0.04
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (118 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGATAAATCCGGGTTAAGTCCGAAGGCATTCGT
GCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:23581399 original size:119 final size:119
Alignment explanation
Indices: 23581153--23581414 Score: 348
Period size: 119 Copynumber: 2.2 Consensus size: 119
23581143 GTGCGAGATA
23581153 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
** * * ** **
23581218 CATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTG
66 CATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCGAAGGCATTCGAACGAGGAG
* * * *
23581272 TTAAATCCGGGTTAAGTCTCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
* * *
23581337 CATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAG
66 CATTCGTGCGAGTTACTAAAACCGGGCTAAGT-CCGAAGGCATTCGAACGAGGAG
* *
23581391 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
23581415 TACGTGATTT
Statistics
Matches: 123, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
118 35 0.28
119 88 0.72
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.27
Consensus pattern (119 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
CATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCGAAGGCATTCGAACGAGGAG
Found at i:23581400 original size:79 final size:80
Alignment explanation
Indices: 23581078--23581379 Score: 378
Period size: 79 Copynumber: 3.8 Consensus size: 80
23581068 TTGAATGCTG
* * * * * * * *
23581078 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
* * **
23581141 TTGTGCGAGATACTAAA
64 TCGTGCGAGTTGTTAAA
23581158 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
23581223 GTGCGAGTTGTTAAA
66 GTGCGAGTTGTTAAA
* *
23581238 TCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCTCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
23581302 GTGCGAGTTGTTAAA
66 GTGCGAGTTGTTAAA
* * * * * *
23581317 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
23581380 TGAACGAGGA
Statistics
Matches: 197, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
79 109 0.55
80 82 0.42
81 6 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
GTGCGAGTTGTTAAA
Found at i:23589293 original size:39 final size:40
Alignment explanation
Indices: 23589066--23589367 Score: 378
Period size: 40 Copynumber: 7.6 Consensus size: 40
23589056 TTGAATGCTG
* * * * * *
23589066 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
23589106 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
23589146 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
23589186 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
23589226 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
23589266 TCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
23589305 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
23589344 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
23589368 TGAACGAGGA
Statistics
Matches: 239, Mismatches: 19, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
39 73 0.31
40 158 0.66
41 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:23591158 original size:85 final size:84
Alignment explanation
Indices: 23591052--23591206 Score: 247
Period size: 85 Copynumber: 1.8 Consensus size: 84
23591042 CATTGAATAA
* * *
23591052 AAAGGGGTTGCTAAGTGCTGATTCCCCGAATTATTGAATTTAAAGGTGGTTGCTAAGTGCTGATT
1 AAAGGGGTTGCTAAGTGCTGATTCCCCGAATCACTGAATTT-AAGGTGGTTGCTAAGTGCTGAAT
23591117 CCACCGTATCTTTGGCTGTG
65 CCACCGTATCTTTGGCTGTG
* * *
23591137 AAAGGGGTTGCTATGTGCTGATTCCCCGTATCGCTGAATTTAAGGTGGTTGCTAAGTGCTGAATC
1 AAAGGGGTTGCTAAGTGCTGATTCCCCGAATCACTGAATTTAAGGTGGTTGCTAAGTGCTGAATC
23591202 CACCG
66 CACCG
23591207 AGTAACGGAT
Statistics
Matches: 64, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
84 28 0.44
85 36 0.56
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (84 bp):
AAAGGGGTTGCTAAGTGCTGATTCCCCGAATCACTGAATTTAAGGTGGTTGCTAAGTGCTGAATC
CACCGTATCTTTGGCTGTG
Found at i:23591160 original size:43 final size:42
Alignment explanation
Indices: 23591043--23591198 Score: 158
Period size: 42 Copynumber: 3.7 Consensus size: 42
23591033 ACCGAAAAAC
** *
23591043 ATTGAATAAAAAGGGGTTGCTAAGTGCTGATTCCCCGAAT-T
1 ATTGAATTGAAAGGGGTTGCTAAGTGCTGATTCCCCGTATCT
*
23591084 ATTGAATTTAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCT
1 ATTGAATTGAAAGG-GGTTGCTAAGTGCTGATTCC-CCGTATCT
** *
23591128 -TTGGCTGTGAAAGGGGTTGCTATGTGCTGATTCCCCGTATC-
1 ATTGAAT-TGAAAGGGGTTGCTAAGTGCTGATTCCCCGTATCT
** *
23591169 GCTGAATT-TAAGGTGGTTGCTAAGTGCTGA
1 ATTGAATTGAAAGG-GGTTGCTAAGTGCTGA
23591199 ATCCACCGAG
Statistics
Matches: 97, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
40 4 0.04
41 28 0.29
42 30 0.31
43 28 0.29
44 7 0.07
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (42 bp):
ATTGAATTGAAAGGGGTTGCTAAGTGCTGATTCCCCGTATCT
Found at i:23593969 original size:101 final size:103
Alignment explanation
Indices: 23593849--23594052 Score: 306
Period size: 102 Copynumber: 2.0 Consensus size: 103
23593839 GCCAAAATAA
* ** *
23593849 TATCGATTTTCAATTGAGTATTGATAC-TTTTGGTAAAATATCAATACCATCAACTAATTATTGA
1 TATCAATTTTCAATTGAGTATCAATACATTTTGGTAAAATATCAATACCATCAACTAATTATCGA
23593913 TACCA-TTGTTTTACAAAGAAAACA-AAGTTGAATTTTG
66 TACCATTTGTTTTACAAAGAAAACATAA-TTGAATTTTG
* *
23593950 TATCAATTTTCAATTGAGTATCAATACATTTTTGTAAAATATCGATACCATCAACTAATTATCGA
1 TATCAATTTTCAATTGAGTATCAATACATTTTGGTAAAATATCAATACCATCAACTAATTATCGA
* *
23594015 TACCATTTTTTTTACAAAGAAAATATAATTGAATTTTG
66 TACCATTTGTTTTACAAAGAAAACATAATTGAATTTTG
23594053 GTATTGATTT
Statistics
Matches: 92, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
101 24 0.26
102 39 0.42
103 27 0.29
104 2 0.02
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (103 bp):
TATCAATTTTCAATTGAGTATCAATACATTTTGGTAAAATATCAATACCATCAACTAATTATCGA
TACCATTTGTTTTACAAAGAAAACATAATTGAATTTTG
Found at i:23594447 original size:18 final size:19
Alignment explanation
Indices: 23594424--23594461 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
23594414 TGGTTTTCTC
*
23594424 AAAATGGAAATG-GAAATG
1 AAAATGAAAATGAGAAATG
23594442 AAAATGAAAATGAGAAATG
1 AAAATGAAAATGAGAAATG
23594461 A
1 A
23594462 TTCATTTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.61, C:0.00, G:0.24, T:0.16
Consensus pattern (19 bp):
AAAATGAAAATGAGAAATG
Found at i:23613147 original size:30 final size:29
Alignment explanation
Indices: 23613111--23613273 Score: 134
Period size: 30 Copynumber: 5.4 Consensus size: 29
23613101 AGCTATCGAT
* *
23613111 TATGAAAAGGGATGGTGACGACCATGGAAC
1 TATGAAAAGGGATGATGACGACCAT-CAAC
* ** * *
23613141 TATGAAAAGGGATGGCT-TTGGCTATCAATC
1 TATGAAAAGGGAT-GATGACGACCATCAA-C
* *
23613171 TATGAAAAGGGATGACT-TC-AGCTATCAATC
1 TATGAAAAGGGATGA-TGACGA-CCATCAA-C
23613201 TATGAAAAGGGATGATGACGACCATCGAAC
1 TATGAAAAGGGATGATGACGACCATC-AAC
* *
23613231 TATGAAAAGGGATGATGACGACAATCAAAT
1 TATGAAAAGGGATGATGACGACCATC-AAC
23613261 TATGAAAAGGGAT
1 TATGAAAAGGGAT
23613274 AGCTTCAGTT
Statistics
Matches: 112, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
29 4 0.04
30 103 0.92
31 5 0.04
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.22
Consensus pattern (29 bp):
TATGAAAAGGGATGATGACGACCATCAAC
Found at i:23613258 original size:90 final size:90
Alignment explanation
Indices: 23613083--23613302 Score: 252
Period size: 90 Copynumber: 2.5 Consensus size: 90
23613073 TTATCGATGA
* * * * * *
23613083 ATGAAAACGAATAGCTTTAGCTATCGAT-TATGAAAAGGGATGGTGACGACCATGGAACTATGAA
1 ATGAAAAGGGATAGCTTCAGCTATCAATCTATGAAAAGGGATGATGACGACCATCGAACTATGAA
* ** * *
23613147 AAGGGATGGCTTTGGCTATC-AATCT
66 AAGGGATGGATACGACAATCAAAT-T
23613172 ATGAAAAGGGAT-GACTTCAGCTATCAATCTATGAAAAGGGATGATGACGACCATCGAACTATGA
1 ATGAAAAGGGATAG-CTTCAGCTATCAATCTATGAAAAGGGATGATGACGACCATCGAACTATGA
23613236 AAAGGGAT-GATGACGACAATCAAATT
65 AAAGGGATGGAT-ACGACAATCAAATT
* *
23613262 ATGAAAAGGGATAGCTTCAGTTGTCGAA-CTATGAAAAGGGA
1 ATGAAAAGGGATAGCTTCAGCTATC-AATCTATGAAAAGGGA
23613303 AAACTTCGGT
Statistics
Matches: 112, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
88 1 0.01
89 24 0.21
90 81 0.72
91 6 0.05
ACGTcount: A:0.38, C:0.13, G:0.25, T:0.23
Consensus pattern (90 bp):
ATGAAAAGGGATAGCTTCAGCTATCAATCTATGAAAAGGGATGATGACGACCATCGAACTATGAA
AAGGGATGGATACGACAATCAAATT
Found at i:23616325 original size:37 final size:37
Alignment explanation
Indices: 23616275--23616353 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
23616265 TTATTACGAA
* * *
23616275 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
23616312 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
23616349 GTCTT
1 GTCTT
23616354 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:23616559 original size:47 final size:47
Alignment explanation
Indices: 23616472--23616993 Score: 767
Period size: 47 Copynumber: 11.1 Consensus size: 47
23616462 CCTTTCGGGA
* * * * * * * * *
23616472 CTTATCACATTTATGCACTTCCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23616519 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23616566 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
23616613 CTTATCACACACATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23616660 C-TATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
23616706 CCTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
23616753 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23616800 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23616847 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23616894 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23616941 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23616990 CTTA
1 CTTA
23616994 CTATCATTTC
Statistics
Matches: 446, Mismatches: 26, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
46 44 0.10
47 361 0.81
49 41 0.09
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:23624597 original size:29 final size:30
Alignment explanation
Indices: 23624532--23624721 Score: 129
Period size: 30 Copynumber: 6.4 Consensus size: 30
23624522 TCATTGACGA
* *
23624532 ATGAAAAGGAATAGCTTCGGCTATCGAA-T
1 ATGAAAAGGGATAGCTTCAGCTATCGAATT
* * *
23624561 ACGGAAAGGGATAGCTTTAGCTATC-AATT
1 ATGAAAAGGGATAGCTTCAGCTATCGAATT
* * * * *
23624590 ATGAAAAGGGAT-GGTGACGGCCATCGAACT
1 ATGAAAAGGGATAGCT-TCAGCTATCGAATT
* * * * *
23624620 ATGAAAAGGGAT-GGTGACAACCATCGAACT
1 ATGAAAAGGGATAGCT-TCAGCTATCGAATT
* **
23624650 ATGAAAAGGGATGGCTTTGGCTATC-AATCT
1 ATGAAAAGGGATAGCTTCAGCTATCGAAT-T
* *
23624680 ATGAAAAGGGATAGCTTCGGCTATCAAATT
1 ATGAAAAGGGATAGCTTCAGCTATCGAATT
*
23624710 ATAAAAAGGGAT
1 ATGAAAAGGGAT
23624722 GGTGACAACC
Statistics
Matches: 130, Mismatches: 25, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
28 4 0.03
29 38 0.29
30 83 0.64
31 5 0.04
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (30 bp):
ATGAAAAGGGATAGCTTCAGCTATCGAATT
Found at i:23624625 original size:30 final size:30
Alignment explanation
Indices: 23624589--23624781 Score: 158
Period size: 30 Copynumber: 6.4 Consensus size: 30
23624579 AGCTATCAAT
*
23624589 TATGAAAAGGGATGGTGACGGCCATCGAAC
1 TATGAAAAGGGATGGTGACGACCATCGAAC
*
23624619 TATGAAAAGGGATGGTGACAACCATCGAAC
1 TATGAAAAGGGATGGTGACGACCATCGAAC
** * *
23624649 TATGAAAAGGGATGGCT-TTGGCTATC-AATC
1 TATGAAAAGGGATGG-TGACGACCATCGAA-C
* * * * * *
23624679 TATGAAAAGGGATAGCT-TCGGCTATCAAAT
1 TATGAAAAGGGAT-GGTGACGACCATCGAAC
* *
23624709 TATAAAAAGGGATGGTGACAACCATCGAAC
1 TATGAAAAGGGATGGTGACGACCATCGAAC
* * * * *
23624739 TATGAAAAAGGATGGTAATGACCATCAAAT
1 TATGAAAAGGGATGGTGACGACCATCGAAC
*
23624769 TATAAAAAGGGAT
1 TATGAAAAGGGAT
23624782 AGCTTTGGCA
Statistics
Matches: 131, Mismatches: 27, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
29 4 0.03
30 123 0.94
31 4 0.03
ACGTcount: A:0.39, C:0.13, G:0.25, T:0.22
Consensus pattern (30 bp):
TATGAAAAGGGATGGTGACGACCATCGAAC
Found at i:23624656 original size:60 final size:59
Alignment explanation
Indices: 23624586--23624781 Score: 189
Period size: 60 Copynumber: 3.3 Consensus size: 59
23624576 TTTAGCTATC
* * *
23624586 AATTATGAAAAGGGATGGTGACGGCCATCGAACTATGAAAAGGGATGGTGACAACCATCG
1 AATTATAAAAAGGGATGGTGACGGCCATCGAACTATGAAAAGGGATGGT-ACGACCATCA
* * ** * * * * *
23624646 AACTATGAAAAGGGATGGCT-TTGGCTATC-AATCTATGAAAAGGGATAGCTTCGGCTATCA
1 AATTATAAAAAGGGATGG-TGACGGCCATCGAA-CTATGAAAAGGGAT-GGTACGACCATCA
** * *
23624706 AATTATAAAAAGGGATGGTGACAACCATCGAACTATGAAAAAGGATGGTAATGACCATCA
1 AATTATAAAAAGGGATGGTGACGGCCATCGAACTATGAAAAGGGATGGT-ACGACCATCA
23624766 AATTATAAAAAGGGAT
1 AATTATAAAAAGGGAT
23624782 AGCTTTGGCA
Statistics
Matches: 107, Mismatches: 23, Indels: 12
0.75 0.16 0.08
Matches are distributed among these distances:
59 5 0.05
60 97 0.91
61 5 0.05
ACGTcount: A:0.40, C:0.13, G:0.25, T:0.22
Consensus pattern (59 bp):
AATTATAAAAAGGGATGGTGACGGCCATCGAACTATGAAAAGGGATGGTACGACCATCA
Found at i:23624721 original size:90 final size:89
Alignment explanation
Indices: 23624565--23624753 Score: 272
Period size: 90 Copynumber: 2.1 Consensus size: 89
23624555 TCGAATACGG
* * * *
23624565 AAAGGGATAGCTTTAGCTATCAATTATGAAAAGGGATGGTGACGGCCATCGAACTATGAAAAGGG
1 AAAGGGATGGCTTTAGCTATCAATTATGAAAAGGGATGCTGACGGCCATCAAACTATAAAAAGGG
23624630 ATGGTGACAACCATCGAACTATGA
66 ATGGTGACAACCATCGAACTATGA
* * * *
23624654 AAAGGGATGGCTTTGGCTATCAATCTATGAAAAGGGATAGCT-TCGGCTATCAAATTATAAAAAG
1 AAAGGGATGGCTTTAGCTATCAAT-TATGAAAAGGGAT-GCTGACGGCCATCAAACTATAAAAAG
23624718 GGATGGTGACAACCATCGAACTATGA
64 GGATGGTGACAACCATCGAACTATGA
*
23624744 AAAAGGATGG
1 AAAGGGATGG
23624754 TAATGACCAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
89 22 0.25
90 65 0.73
91 2 0.02
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.22
Consensus pattern (89 bp):
AAAGGGATGGCTTTAGCTATCAATTATGAAAAGGGATGCTGACGGCCATCAAACTATAAAAAGGG
ATGGTGACAACCATCGAACTATGA
Found at i:23624766 original size:90 final size:89
Alignment explanation
Indices: 23624583--23624811 Score: 266
Period size: 90 Copynumber: 2.6 Consensus size: 89
23624573 AGCTTTAGCT
* * * *
23624583 ATCAATTATGAAAAGGGAT-GGTGACGGCCATCGAACTATGAAAAGGGATGGTGACAACCATCGA
1 ATCAATTATGAAAAGGGATAGCT-TCGGCCATCAAACTATAAAAAGGGATGGTGACAACCATCGA
* * * *
23624647 ACTATGAAAAGGGATGGCTTTGGCT
65 ACTATGAAAAAGGATGGCTATGACC
* *
23624672 ATCAATCTATGAAAAGGGATAGCTTCGGCTATCAAATTATAAAAAGGGATGGTGACAACCATCGA
1 ATCAAT-TATGAAAAGGGATAGCTTCGGCCATCAAACTATAAAAAGGGATGGTGACAACCATCGA
23624737 ACTATGAAAAAGGATGG-TAATGACC
65 ACTATGAAAAAGGATGGCT-ATGACC
* * * *
23624762 ATCAAATTATAAAAAGGGATAGCTTTGG-CAGTCAAACTGTGAAAAGGGAT
1 ATC-AATTATGAAAAGGGATAGCTTCGGCCA-TCAAACTATAAAAAGGGAT
23624812 AACTTCAATT
Statistics
Matches: 119, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
89 8 0.07
90 106 0.89
91 5 0.04
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.22
Consensus pattern (89 bp):
ATCAATTATGAAAAGGGATAGCTTCGGCCATCAAACTATAAAAAGGGATGGTGACAACCATCGAA
CTATGAAAAAGGATGGCTATGACC
Found at i:23626793 original size:27 final size:27
Alignment explanation
Indices: 23626755--23626810 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
23626745 TTTCTTTAGT
23626755 GACTGATTCGGGTCGACGTTAGCTATG
1 GACTGATTCGGGTCGACGTTAGCTATG
23626782 GACTGATTCGGGTCGACGTTAGCTATG
1 GACTGATTCGGGTCGACGTTAGCTATG
23626809 GA
1 GA
23626811 TTAAAATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.20, C:0.18, G:0.34, T:0.29
Consensus pattern (27 bp):
GACTGATTCGGGTCGACGTTAGCTATG
Found at i:23637123 original size:27 final size:27
Alignment explanation
Indices: 23637081--23637132 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
23637071 AGTATGATCC
23637081 TAGTCTCAATGATAATCCAAATGGTCT
1 TAGTCTCAATGATAATCCAAATGGTCT
* *
23637108 TAGTCTTAATGTTAATCCAAATGGT
1 TAGTCTCAATGATAATCCAAATGGT
23637133 TAAGATTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (27 bp):
TAGTCTCAATGATAATCCAAATGGTCT
Found at i:23647797 original size:19 final size:19
Alignment explanation
Indices: 23647773--23647821 Score: 98
Period size: 19 Copynumber: 2.6 Consensus size: 19
23647763 AGTCGTGTGG
23647773 CCAGGCTATGTGACAAAGC
1 CCAGGCTATGTGACAAAGC
23647792 CCAGGCTATGTGACAAAGC
1 CCAGGCTATGTGACAAAGC
23647811 CCAGGCTATGT
1 CCAGGCTATGT
23647822 AACATTCCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.29, C:0.27, G:0.27, T:0.18
Consensus pattern (19 bp):
CCAGGCTATGTGACAAAGC
Found at i:23648662 original size:38 final size:38
Alignment explanation
Indices: 23648620--23648713 Score: 154
Period size: 38 Copynumber: 2.5 Consensus size: 38
23648610 AACATTTATT
*
23648620 ACACCGGCA-TCAAGCCTGCTAGGCATTAAGCCTAAATA
1 ACACCGGCACT-AAGCCTGCTAGGCATTAAGCATAAATA
*
23648658 ACACCGGCACTAAGCCTGCTAGGCATTAAGCATGAATA
1 ACACCGGCACTAAGCCTGCTAGGCATTAAGCATAAATA
23648696 ACACCGGCACTAAGCCTG
1 ACACCGGCACTAAGCCTG
23648714 AATAACACCG
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
38 52 0.98
39 1 0.02
ACGTcount: A:0.33, C:0.30, G:0.20, T:0.17
Consensus pattern (38 bp):
ACACCGGCACTAAGCCTGCTAGGCATTAAGCATAAATA
Found at i:23648671 original size:22 final size:22
Alignment explanation
Indices: 23648641--23648723 Score: 79
Period size: 22 Copynumber: 4.0 Consensus size: 22
23648631 AAGCCTGCTA
* *
23648641 GGCATTAAGCCTAAATAACACC
1 GGCACTAAGCCTGAATAACACC
*
23648663 GGCACTAAGCCTG-CT---A--
1 GGCACTAAGCCTGAATAACACC
* *
23648679 GGCATTAAGCATGAATAACACC
1 GGCACTAAGCCTGAATAACACC
23648701 GGCACTAAGCCTGAATAACACC
1 GGCACTAAGCCTGAATAACACC
23648723 G
1 G
23648724 CATTTGACTA
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
16 11 0.23
17 1 0.02
18 1 0.02
20 1 0.02
21 1 0.02
22 32 0.68
ACGTcount: A:0.36, C:0.28, G:0.19, T:0.17
Consensus pattern (22 bp):
GGCACTAAGCCTGAATAACACC
Found at i:23653189 original size:382 final size:379
Alignment explanation
Indices: 23652482--23653246 Score: 1028
Period size: 382 Copynumber: 2.0 Consensus size: 379
23652472 CTGGAGCTCC
* * * * *
23652482 CCAAGAAGATATACTTGGTCGAATGAAACCTCTATCTAGTAATTCTTGCAATTGTGCTTTAAGTT
1 CCAAGAAGATATACTCGGTCAAAAGAAACCTCTATCTAGTAATTCTTGCAACTGTGCGTTAAGTT
* ** * * *
23652547 CTTTTAACTCAGTTGGTGCCCTTTTATACAGCAGAATCGATATCGATGTCTCGGTTATTAAATCA
66 CTTTTAACTAAGTCAGTGCCATTCTATACAGCAGAATCGATATAGATGTCTCGGTTATTAAATCA
* ** *
23652612 ATAGAAAATTCAACTTTTTGCTCTGCCGATAATCTAGATAGCTCTTCAAGAAATACGTATAAGAA
131 ATAGAAAATTCAAATTCCTGCTCTGCCGACAATCTAGATAGCTCTTCAAGAAATACGTATAAGAA
* * * *
23652677 TTCACTTACTGTTGGTAAGTGATCCACCTTCTTCTCTGGCACTCTGGAGTCTAGAATGTAAGCTA
196 TTCACATACTGTTGGTAAGTGATCCACCTTCTTCGCTGGCACTCTGGAGTCCAAAATGTAAGCTA
* *
23652742 AAAATGCATCACAACCTCTTCATACTAGTTTTTGCGCTTTTATTACCAAGATGAAACTCGAAATA
261 AAAATGCATCACAACCTCTTCATACTAGTTTCTGCGCTTTTATTACCAAGATAAAACTCGAAATA
* ** * *
23652807 CTATCGGTTTTATCAAATCTAAAAGAAACTATCCTACCATCGAGACATCTTAAA
326 CCATAAGTTCTATCAAATCTAAAAGAAACTATCCTACCATCGAGACATCTCAAA
23652861 CCAAGAAGATATACTCGGTCAAAAGAAACCTCTATCTAGTAATTCTTGCAACTGTGCGTTAAGTT
1 CCAAGAAGATATACTCGGTCAAAAGAAACCTCTATCTAGTAATTCTTGCAACTGTGCGTTAAGTT
* * *
23652926 CTTTTAACTAAGTCAGTGCCATTCTATA-TGACAGAATCGATATAGGTGTAGTTCTGGTTATTAA
66 CTTTTAACTAAGTCAGTGCCATTCTATACAG-CAGAATCGATATAGATGT--CTC-GGTTATTAA
* * * * * * * * *
23652990 ATCAATAGCAAATTCAAATTCCTGCTTTGGCGGCAATCTCGATAGCTCTTCAGGAAATATGTTTG
127 ATCAATAGAAAATTCAAATTCCTGCTCTGCCGACAATCTAGATAGCTCTTCAAGAAATACGTATA
** * *
23653055 AGAATTCACATACTGTTGGTACTTGGTCCACCTTCTTCGCTGGCACTTTGGAGTCCAAAATGTAA
192 AGAATTCACATACTGTTGGTAAGTGATCCACCTTCTTCGCTGGCACTCTGGAGTCCAAAATGTAA
* * ** * * *
23653120 GCTAAAAATGCATCACAACCTTTTCGTACTAGTTTCTGCGCTTTTATTGTCGAGTTAAAACTTGA
257 GCTAAAAATGCATCACAACCTCTTCATACTAGTTTCTGCGCTTTTATTACCAAGATAAAACTCGA
* *
23653185 AATACCATAAGTTCTATCAAATCTAAAAGAAATTATCCTACCATCGGGACATCTCAAA
322 AATACCATAAGTTCTATCAAATCTAAAAGAAACTATCCTACCATCGAGACATCTCAAA
23653243 CCAA
1 CCAA
23653247 CTCTTTTTCA
Statistics
Matches: 331, Mismatches: 51, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
378 1 0.00
379 99 0.30
381 2 0.01
382 229 0.69
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.33
Consensus pattern (379 bp):
CCAAGAAGATATACTCGGTCAAAAGAAACCTCTATCTAGTAATTCTTGCAACTGTGCGTTAAGTT
CTTTTAACTAAGTCAGTGCCATTCTATACAGCAGAATCGATATAGATGTCTCGGTTATTAAATCA
ATAGAAAATTCAAATTCCTGCTCTGCCGACAATCTAGATAGCTCTTCAAGAAATACGTATAAGAA
TTCACATACTGTTGGTAAGTGATCCACCTTCTTCGCTGGCACTCTGGAGTCCAAAATGTAAGCTA
AAAATGCATCACAACCTCTTCATACTAGTTTCTGCGCTTTTATTACCAAGATAAAACTCGAAATA
CCATAAGTTCTATCAAATCTAAAAGAAACTATCCTACCATCGAGACATCTCAAA
Found at i:23660830 original size:15 final size:15
Alignment explanation
Indices: 23660810--23660839 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
23660800 GTTAACAAGA
23660810 AAGAGGAGTTTAGAC
1 AAGAGGAGTTTAGAC
23660825 AAGAGGAGTTTAGAC
1 AAGAGGAGTTTAGAC
23660840 TCCGTGAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.33, T:0.20
Consensus pattern (15 bp):
AAGAGGAGTTTAGAC
Found at i:23662090 original size:10 final size:10
Alignment explanation
Indices: 23662077--23662137 Score: 63
Period size: 10 Copynumber: 6.0 Consensus size: 10
23662067 TTTAATGTTA
23662077 TTTATTTATT
1 TTTATTTATT
23662087 TTTATTT-TT
1 TTTATTTATT
*
23662096 TCTTACTTATT
1 T-TTATTTATT
*
23662107 TTTATGACTATT
1 TTTAT--TTATT
23662119 TTTA-TTATT
1 TTTATTTATT
23662128 TTTATTTATT
1 TTTATTTATT
23662138 CTCTTTAGTG
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
9 11 0.26
10 20 0.48
11 3 0.07
12 8 0.19
ACGTcount: A:0.20, C:0.05, G:0.02, T:0.74
Consensus pattern (10 bp):
TTTATTTATT
Found at i:23667033 original size:49 final size:47
Alignment explanation
Indices: 23666789--23667404 Score: 1025
Period size: 47 Copynumber: 12.9 Consensus size: 47
23666779 TAGTATGGCG
*
23666789 TAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
23666836 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
23666883 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
23666930 TAATGGCCGATGTGATGAATGTGAAAGTGTTTATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
23666977 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
23667026 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
23667073 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
23667122 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
23667171 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
23667220 TAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
23667267 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
23667314 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
23667361 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
23667405 TCCCGAAGGG
Statistics
Matches: 548, Mismatches: 17, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
47 360 0.66
49 188 0.34
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:23667581 original size:37 final size:37
Alignment explanation
Indices: 23667523--23667601 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
23667513 CCGAGCTCTA
* * *
23667523 AAGACCCGATGACTACATGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
* *
23667560 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
23667597 AAGAC
1 AAGAC
23667602 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
Found at i:23672826 original size:37 final size:37
Alignment explanation
Indices: 23672776--23672854 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
23672766 TTATTACGAA
* * *
23672776 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
23672813 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCTG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
23672850 GTCTT
1 GTCTT
23672855 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:23673051 original size:47 final size:47
Alignment explanation
Indices: 23672973--23673457 Score: 853
Period size: 47 Copynumber: 10.3 Consensus size: 47
23672963 CCCTTCGGGA
* * * * * *
23672973 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23673020 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23673067 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTACGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23673114 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23673161 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23673208 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23673255 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23673302 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23673349 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23673396 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23673443 CTTATCACATATATA
1 CTTATCACATATATA
23673458 TACACTATCT
Statistics
Matches: 420, Mismatches: 18, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 420 1.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:23673217 original size:22 final size:22
Alignment explanation
Indices: 23673189--23673311 Score: 66
Period size: 22 Copynumber: 5.3 Consensus size: 22
23673179 TTTCACATTC
23673189 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
*** *** *
23673211 ATCACATATACACACTTTCACATT
1 ATCACATCGGC-CA-TTAGGCCTT
23673235 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
*** *** *
23673258 ATCACATATACACACTTTCACATT
1 ATCACATCGGC-CA-TTAGGCCTT
23673282 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
23673305 ATCACAT
1 ATCACAT
23673312 ATATACACTT
Statistics
Matches: 67, Mismatches: 28, Indels: 12
0.63 0.26 0.11
Matches are distributed among these distances:
22 23 0.34
23 14 0.21
24 14 0.21
25 16 0.24
ACGTcount: A:0.29, C:0.32, G:0.10, T:0.29
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:23675657 original size:85 final size:85
Alignment explanation
Indices: 23675558--23675732 Score: 341
Period size: 85 Copynumber: 2.1 Consensus size: 85
23675548 TATTTTATTG
23675558 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
23675623 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
*
23675643 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
23675708 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
23675728 CCCAT
1 CCCAT
23675733 ACTCATGGCC
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 89 1.00
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.38
Consensus pattern (85 bp):
CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:23677725 original size:40 final size:40
Alignment explanation
Indices: 23677374--23677716 Score: 488
Period size: 40 Copynumber: 8.6 Consensus size: 40
23677364 CCAGCATGAT
* * * * * *
23677374 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCATGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* *** * *
23677414 TGTTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* *
23677454 TGCTCTTCGGGACTTAGCCCGAATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
23677494 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
23677534 TGCTCTTCGAAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* *
23677574 TGCTCTTTGAAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
23677614 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
23677654 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* *
23677694 TGCTCTTCGGGATTTAGCCCGGA
1 TGCTCTTCGGAACTTAGCCCGGA
23677717 CATTTCACTC
Statistics
Matches: 277, Mismatches: 26, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 277 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:23678991 original size:37 final size:37
Alignment explanation
Indices: 23678941--23679019 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
23678931 TTATTACGAA
* * *
23678941 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
23678978 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
23679015 GTCTT
1 GTCTT
23679020 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:23679216 original size:47 final size:47
Alignment explanation
Indices: 23679138--23679575 Score: 759
Period size: 47 Copynumber: 9.3 Consensus size: 47
23679128 CCCTTCGGGA
* * * * * *
23679138 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23679185 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23679232 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTACGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23679279 CTTGTCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23679326 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23679373 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23679420 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23679467 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23679514 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23679561 CTTATCACATATATA
1 CTTATCACATATATA
23679576 TACACTGTCT
Statistics
Matches: 371, Mismatches: 20, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 371 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:23679382 original size:22 final size:22
Alignment explanation
Indices: 23679354--23679429 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
23679344 TTTCACATTC
23679354 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
*** *** *
23679376 ATCACATATACACACTTTCACATT
1 ATCACATCGGC-CA-TTAGGCCTT
23679400 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
23679423 ATCACAT
1 ATCACAT
23679430 ATATACACTT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.29, C:0.32, G:0.11, T:0.29
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:23679476 original size:22 final size:22
Alignment explanation
Indices: 23679448--23679523 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
23679438 TTTCACATTC
23679448 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
*** *** *
23679470 ATCACATATACACACTTTCACATT
1 ATCACATCGGC-CA-TTAGGCCTT
23679494 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
23679517 ATCACAT
1 ATCACAT
23679524 ATATACACTT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.29, C:0.32, G:0.11, T:0.29
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:23681814 original size:85 final size:85
Alignment explanation
Indices: 23681671--23681845 Score: 341
Period size: 85 Copynumber: 2.1 Consensus size: 85
23681661 ATATTTATTG
23681671 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
23681736 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
*
23681756 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
23681821 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
23681841 CCCAT
1 CCCAT
23681846 ACTCATGGCC
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 89 1.00
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.38
Consensus pattern (85 bp):
CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:23683837 original size:40 final size:40
Alignment explanation
Indices: 23683486--23683828 Score: 488
Period size: 40 Copynumber: 8.6 Consensus size: 40
23683476 CCAGCATGAT
* * * * * *
23683486 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCATGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* *** * *
23683526 TGTTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* *
23683566 TGCTCTTCGGGACTTAGCCCGAATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
23683606 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
23683646 TGCTCTTCGAAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* *
23683686 TGCTCTTTGAAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
23683726 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
23683766 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* *
23683806 TGCTCTTCGGGATTTAGCCCGGA
1 TGCTCTTCGGAACTTAGCCCGGA
23683829 CATTTCACTC
Statistics
Matches: 277, Mismatches: 26, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 277 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:23685103 original size:37 final size:37
Alignment explanation
Indices: 23685053--23685131 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
23685043 TTATTACGAA
* * *
23685053 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
23685090 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
23685127 GTCTT
1 GTCTT
23685132 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:23685328 original size:47 final size:47
Alignment explanation
Indices: 23685250--23685687 Score: 759
Period size: 47 Copynumber: 9.3 Consensus size: 47
23685240 CCCTTCGGGA
* * * * * *
23685250 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23685297 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23685344 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTACGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23685391 CTTGTCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23685438 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23685485 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23685532 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23685579 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23685626 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23685673 CTTATCACATATATA
1 CTTATCACATATATA
23685688 TACACTGTCT
Statistics
Matches: 371, Mismatches: 20, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 371 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:23685494 original size:22 final size:22
Alignment explanation
Indices: 23685466--23685541 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
23685456 TTTCACATTC
23685466 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
*** *** *
23685488 ATCACATATACACACTTTCACATT
1 ATCACATCGGC-CA-TTAGGCCTT
23685512 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
23685535 ATCACAT
1 ATCACAT
23685542 ATATACACTT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.29, C:0.32, G:0.11, T:0.29
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:23685588 original size:22 final size:22
Alignment explanation
Indices: 23685560--23685635 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
23685550 TTTCACATTC
23685560 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
*** *** *
23685582 ATCACATATACACACTTTCACATT
1 ATCACATCGGC-CA-TTAGGCCTT
23685606 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
23685629 ATCACAT
1 ATCACAT
23685636 ATATACACTT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.29, C:0.32, G:0.11, T:0.29
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:23687912 original size:85 final size:85
Alignment explanation
Indices: 23687783--23687961 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
23687773 TATTTTATTG
*
23687783 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
23687848 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
23687868 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
23687933 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
23687953 CCCATGCTC
1 CCCATGCTC
23687962 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:23703904 original size:35 final size:35
Alignment explanation
Indices: 23703858--23703925 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
23703848 TGAAACAAGA
23703858 ATGTCATGACAAAGCCACTACAGAAAAGAAGATGG
1 ATGTCATGACAAAGCCACTACAGAAAAGAAGATGG
23703893 ATGTCATGACAAAGCCACTACAGAAAAGAAGAT
1 ATGTCATGACAAAGCCACTACAGAAAAGAAGAT
23703926 TAAGGAACTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.15
Consensus pattern (35 bp):
ATGTCATGACAAAGCCACTACAGAAAAGAAGATGG
Found at i:23705633 original size:18 final size:19
Alignment explanation
Indices: 23705605--23705641 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
23705595 GCATTCACAT
23705605 CTTTCCTCTCTTCTCTCCA
1 CTTTCCTCTCTTCTCTCCA
*
23705624 CTTT-CTCTCTTCTTTCCA
1 CTTTCCTCTCTTCTCTCCA
23705642 TTCCAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.05, C:0.43, G:0.00, T:0.51
Consensus pattern (19 bp):
CTTTCCTCTCTTCTCTCCA
Found at i:23707493 original size:38 final size:38
Alignment explanation
Indices: 23707413--23707499 Score: 93
Period size: 38 Copynumber: 2.3 Consensus size: 38
23707403 ATCGTATTGT
* * *** *
23707413 TATTCAGGCTTAGTGCCTAACATGCCTAGTGCTGGTGT
1 TATTCAGGCTTAGTGCCTAACACGCCTAATGCCAATGC
* *
23707451 TATTCAGGCTTAGTGCCTAGCACGCTTAATGCCAATGC
1 TATTCAGGCTTAGTGCCTAACACGCCTAATGCCAATGC
*
23707489 TATTCATGCTT
1 TATTCAGGCTT
23707500 GGTGTTGGTG
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (38 bp):
TATTCAGGCTTAGTGCCTAACACGCCTAATGCCAATGC
Found at i:23707557 original size:38 final size:38
Alignment explanation
Indices: 23707506--23707603 Score: 151
Period size: 38 Copynumber: 2.6 Consensus size: 38
23707496 GCTTGGTGTT
*
23707506 GGTGTTATTCAGGCTTATTGCCTAGCAGGCTTAGTGCC
1 GGTGTTATTCAGGCTTATTGCCTAGCAAGCTTAGTGCC
* *
23707544 GGTGTTATTCAGGCATAGTGCCTAGCAAGCTTAGTGCC
1 GGTGTTATTCAGGCTTATTGCCTAGCAAGCTTAGTGCC
**
23707582 AATGTTATTCAGGCTTATTGCC
1 GGTGTTATTCAGGCTTATTGCC
23707604 GGTGTAATAA
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 53 1.00
ACGTcount: A:0.19, C:0.20, G:0.27, T:0.34
Consensus pattern (38 bp):
GGTGTTATTCAGGCTTATTGCCTAGCAAGCTTAGTGCC
Found at i:23707582 original size:98 final size:98
Alignment explanation
Indices: 23707410--23707597 Score: 286
Period size: 98 Copynumber: 1.9 Consensus size: 98
23707400 TGAATCGTAT
* * * *
23707410 TGTTATTCAGGCTTAGTGCCTAACATGCCTAGTGCTGGTGTTATTCAGGCTTAGTGCCTAGCACG
1 TGTTATTCAGGCTTAGTGCCTAACAGGCCTAGTGCCGGTGTTATTCAGGCATAGTGCCTAGCAAG
*
23707475 CTTAATGCCAATGCTATTCATGCTTGGTGTTGG
66 CTTAATGCCAATGCTATTCAGGCTTGGTGTTGG
* * *
23707508 TGTTATTCAGGCTTATTGCCTAGCAGGCTTAGTGCCGGTGTTATTCAGGCATAGTGCCTAGCAAG
1 TGTTATTCAGGCTTAGTGCCTAACAGGCCTAGTGCCGGTGTTATTCAGGCATAGTGCCTAGCAAG
* *
23707573 CTTAGTGCCAATGTTATTCAGGCTT
66 CTTAATGCCAATGCTATTCAGGCTT
23707598 ATTGCCGGTG
Statistics
Matches: 80, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
98 80 1.00
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (98 bp):
TGTTATTCAGGCTTAGTGCCTAACAGGCCTAGTGCCGGTGTTATTCAGGCATAGTGCCTAGCAAG
CTTAATGCCAATGCTATTCAGGCTTGGTGTTGG
Found at i:23715928 original size:335 final size:335
Alignment explanation
Indices: 23715318--23715990 Score: 1130
Period size: 335 Copynumber: 2.0 Consensus size: 335
23715308 AGTATTTGAT
* * * *
23715318 GACATAGAGGGAACTGAATCTGAGACAGTAACGGTGGTTAGAGCTATTGAAAGATTATGACCTTG
1 GACATAGAAGGAACTGAATCTGAGACAGCAACAGTGGTTAGAGCTATTGAAAGATTATGACCTCG
* * *
23715383 TGATTGATTACCATCCTGGGAAGGTAAATGTTGTTGCAAATGCTTTAAGCCACAAATCATTGTTT
66 TGATTAATTACCATCCTAGGAAGGTAAATGTTGTTGCAAATGATTTAAGCCACAAATCATTGTTT
23715448 ACTTTAAGAACAATGAACGCACATTTATCCCTAGAGAGTGATGGTTCTATTATAGCTAAGCTTAG
131 ACTTTAAGAACAATGAACGCACATTTATCCCTAGAGAGTGATGGTTCTATTATAGCTAAGCTTAG
* * *
23715513 GGCTAGGCCGTTATTTCTTCAGTGAATTTGGGAATTACAAAGTGATGACCTGAAGTTAGTAGCCA
196 GGCTAGGCCGTTATTTCTTCAGCGAATTCGAGAATTACAAAGTGATGACCTGAAGTTAGTAGCCA
*
23715578 AACGAGAGCTGATCCAGAGTGATTCGACTATGGGATTCATTATGAGTGACAATGGTATGATGTAT
261 AACGAGAGCTGATCCAGAGTGATTCGACTACGGGATTCATTATGAGTGACAATGGTATGATGTAT
23715643 TTTCATAATC
326 TTTCATAATC
*
23715653 GACATAGAAGGAACTGAATCTGAGACAGCGACAGTGGTTAGAGCTATTGAAAGATTATGACCTCG
1 GACATAGAAGGAACTGAATCTGAGACAGCAACAGTGGTTAGAGCTATTGAAAGATTATGACCTCG
* *** *
23715718 TGATTAATTACCATCCTAGGAAGGTAAATGTTGTTGCAGATGATTTAAGCTGTAAATGATTGTTT
66 TGATTAATTACCATCCTAGGAAGGTAAATGTTGTTGCAAATGATTTAAGCCACAAATCATTGTTT
* * * *
23715783 GCTTTAAGAACAATGAACGCACATTTATCCTTGGAGAGTGATGGTTCTGTTATAGCTAAGCTTAG
131 ACTTTAAGAACAATGAACGCACATTTATCCCTAGAGAGTGATGGTTCTATTATAGCTAAGCTTAG
* *
23715848 GGCTAGGTCGTTATTTCTTCAGCGAATTCGAGAATTACGAAGTGATGACCTGAAGTTAGTAGCCA
196 GGCTAGGCCGTTATTTCTTCAGCGAATTCGAGAATTACAAAGTGATGACCTGAAGTTAGTAGCCA
23715913 AACGAGAGCTGATCCAGAGTGATTCGACTACGGGATTCATTATGAGTGACAATGGTATGATGTAT
261 AACGAGAGCTGATCCAGAGTGATTCGACTACGGGATTCATTATGAGTGACAATGGTATGATGTAT
*
23715978 TTTGATAATC
326 TTTCATAATC
23715988 GAC
1 GAC
23715991 TGTGTATTCT
Statistics
Matches: 314, Mismatches: 24, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
335 314 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.30
Consensus pattern (335 bp):
GACATAGAAGGAACTGAATCTGAGACAGCAACAGTGGTTAGAGCTATTGAAAGATTATGACCTCG
TGATTAATTACCATCCTAGGAAGGTAAATGTTGTTGCAAATGATTTAAGCCACAAATCATTGTTT
ACTTTAAGAACAATGAACGCACATTTATCCCTAGAGAGTGATGGTTCTATTATAGCTAAGCTTAG
GGCTAGGCCGTTATTTCTTCAGCGAATTCGAGAATTACAAAGTGATGACCTGAAGTTAGTAGCCA
AACGAGAGCTGATCCAGAGTGATTCGACTACGGGATTCATTATGAGTGACAATGGTATGATGTAT
TTTCATAATC
Done.