Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 86 of 221
Found at i:25929099 original size:24 final size:24
Alignment explanation
Indices: 25929072--25929157 Score: 68
Period size: 25 Copynumber: 3.5 Consensus size: 24
25929062 TCCTGAAATC
25929072 GGCTCGTATGAGCTTCCTGTTAAT
1 GGCTCGTATGAGCTTCCTGTTAAT
**
25929096 GGCTC-TCCA-GAGCTTCCAATTACAT
1 GGCTCGT--ATGAGCTTCCTGTTA-AT
*** *
25929121 GGCTCACGTGAGCTTCCTGTTTAT
1 GGCTCGTATGAGCTTCCTGTTAAT
25929145 GTGCTCGTATGAG
1 G-GCTCGTATGAG
25929158 TATTCCCGAA
Statistics
Matches: 46, Mismatches: 10, Indels: 11
0.69 0.15 0.16
Matches are distributed among these distances:
23 1 0.02
24 19 0.41
25 26 0.57
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.34
Consensus pattern (24 bp):
GGCTCGTATGAGCTTCCTGTTAAT
Found at i:25935149 original size:32 final size:31
Alignment explanation
Indices: 25935091--25935153 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 31
25935081 GCCCGAAGGA
*
25935091 TCTTTGGTGTGAACACTCGGATTTGAATGGT
1 TCTTTGGTGTGAACACTAGGATTTGAATGGT
*
25935122 TCTTTGGGTGTGAACACCTAGTA-TTGAATGGT
1 TCTTT-GGTGTGAACA-CTAGGATTTGAATGGT
25935154 CCATTGAATG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 5 0.18
32 19 0.68
33 4 0.14
ACGTcount: A:0.21, C:0.13, G:0.29, T:0.38
Consensus pattern (31 bp):
TCTTTGGTGTGAACACTAGGATTTGAATGGT
Found at i:25938328 original size:24 final size:24
Alignment explanation
Indices: 25938301--25938358 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
25938291 CAGCTCGAAA
* *
25938301 GAGCATCCCGTTATTAGCTC-TCAT
1 GAGCATCCCGTTAATAGCTCTTC-G
*
25938325 GAGCTTCCCGTTAATAGCTCTTCG
1 GAGCATCCCGTTAATAGCTCTTCG
25938349 GAGCATCCCG
1 GAGCATCCCG
25938359 ATTGGTTGTG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 27 0.93
25 2 0.07
ACGTcount: A:0.19, C:0.31, G:0.21, T:0.29
Consensus pattern (24 bp):
GAGCATCCCGTTAATAGCTCTTCG
Found at i:25938495 original size:26 final size:26
Alignment explanation
Indices: 25938457--25938528 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 26
25938447 GCTCTTTCAT
* * *
25938457 GAGCTTATCGATTAATTGGCTCTCTA
1 GAGCTTCTTGATTAATTGGCTCTCCA
*
25938483 GAGCTTCTTGATTAAGTGGCTCTCCA
1 GAGCTTCTTGATTAATTGGCTCTCCA
*
25938509 GAGCTTCCTGA-T-ATTGGCTC
1 GAGCTTCTTGATTAATTGGCTC
25938529 ACTTGAACCT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
24 7 0.17
25 1 0.03
26 32 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.36
Consensus pattern (26 bp):
GAGCTTCTTGATTAATTGGCTCTCCA
Found at i:25941455 original size:7 final size:8
Alignment explanation
Indices: 25941400--25941459 Score: 59
Period size: 8 Copynumber: 7.0 Consensus size: 8
25941390 TTAGAAATTC
25941400 AAAAA-AT
1 AAAAATAT
25941407 AAAAATCATT
1 AAAAAT-A-T
*
25941417 AAAATTATT
1 AAAAATA-T
25941426 AAAAAAGTAT
1 -AAAAA-TAT
25941436 AAAAATAT
1 AAAAATAT
25941444 AAAAATAT
1 AAAAATAT
25941452 AAAAATAT
1 AAAAATAT
25941460 TTGTTAATTT
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
7 5 0.11
8 19 0.41
9 9 0.20
10 11 0.24
11 2 0.04
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.27
Consensus pattern (8 bp):
AAAAATAT
Found at i:25944197 original size:25 final size:24
Alignment explanation
Indices: 25944146--25944230 Score: 82
Period size: 25 Copynumber: 3.5 Consensus size: 24
25944136 CACACCACAA
* *
25944146 CTCGTATGAGCTTCTCGATTTCTAG
1 CTCGTATGAGCTTATCGTTTTC-AG
25944171 CTCGTATGAGCTTATCGTTATTCAG
1 CTCGTATGAGCTTATCGTT-TTCAG
* * *
25944196 CTCAG-AAGAGCTTACCGTTTACAG
1 CTC-GTATGAGCTTATCGTTTTCAG
*
25944220 CTTGTATGAGC
1 CTCGTATGAGC
25944231 ATACATGTAC
Statistics
Matches: 50, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
23 1 0.02
24 11 0.22
25 34 0.68
26 4 0.08
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.35
Consensus pattern (24 bp):
CTCGTATGAGCTTATCGTTTTCAG
Found at i:25951569 original size:25 final size:25
Alignment explanation
Indices: 25951526--25951663 Score: 186
Period size: 25 Copynumber: 5.5 Consensus size: 25
25951516 CACACCACAG
* *
25951526 CTCGTATGAGCTTCTCGATTTGCAA
1 CTCGTATGAGCTTCCCGATTTACAA
* * *
25951551 CTCTTATGAGATTCCCGATTTGCAA
1 CTCGTATGAGCTTCCCGATTTACAA
*
25951576 CTCGTATGAGCTTCCCGATTTACAG
1 CTCGTATGAGCTTCCCGATTTACAA
*
25951601 CTCGTATGAGCTTCCCGATTTATAA
1 CTCGTATGAGCTTCCCGATTTACAA
* * *
25951626 CTCATATGAGCTTCCCGATTTATAG
1 CTCGTATGAGCTTCCCGATTTACAA
25951651 CTCGTATGAGCTT
1 CTCGTATGAGCTT
25951664 ACCGTTATTC
Statistics
Matches: 101, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 101 1.00
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.36
Consensus pattern (25 bp):
CTCGTATGAGCTTCCCGATTTACAA
Found at i:25951609 original size:50 final size:50
Alignment explanation
Indices: 25951526--25951709 Score: 201
Period size: 50 Copynumber: 3.7 Consensus size: 50
25951516 CACACCACAG
* * * * * *
25951526 CTCGTATGAGCTTCTCGATTTGCAACTCTTATGAGATTCCCGATTTGCAA
1 CTCGTATGAGCTTCCCGATTTACAGCTCGTATGAGCTTCCCGATTTACAA
*
25951576 CTCGTATGAGCTTCCCGATTTACAGCTCGTATGAGCTTCCCGATTTATAA
1 CTCGTATGAGCTTCCCGATTTACAGCTCGTATGAGCTTCCCGATTTACAA
* * * * *
25951626 CTCATATGAGCTTCCCGATTTATAGCTCGTATGAGCTTACCG-TTATTCAG
1 CTCGTATGAGCTTCCCGATTTACAGCTCGTATGAGCTTCCCGATT-TACAA
* * * *
25951676 CTCGGAAGAGCTTACCG-TTTACAGCTCATATGAG
1 CTCGTATGAGCTTCCCGATTTACAGCTCGTATGAG
25951710 TATACATGTA
Statistics
Matches: 114, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
49 17 0.15
50 97 0.85
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (50 bp):
CTCGTATGAGCTTCCCGATTTACAGCTCGTATGAGCTTCCCGATTTACAA
Found at i:25951645 original size:75 final size:75
Alignment explanation
Indices: 25951522--25951709 Score: 227
Period size: 75 Copynumber: 2.5 Consensus size: 75
25951512 CTGACACACC
* * * *
25951522 ACAGCTCGTATGAGCTTCTCGATTTGCAACTCTTATGAGATTCCCGATTTGCAACTCGTATGAGC
1 ACAGCTCGTATGAGCTTCCCGATTTACAACTCATATGAGATTCCCGATTTACAACTCGTATGAGC
*
25951587 TTCCCGATT-T
66 TTACCG-TTAT
* * * *
25951597 ACAGCTCGTATGAGCTTCCCGATTTATAACTCATATGAGCTTCCCGATTTATAGCTCGTATGAGC
1 ACAGCTCGTATGAGCTTCCCGATTTACAACTCATATGAGATTCCCGATTTACAACTCGTATGAGC
25951662 TTACCGTTAT
66 TTACCGTTAT
* * * * *
25951672 TCAGCTCGGAAGAGCTTACCG-TTTACAGCTCATATGAG
1 ACAGCTCGTATGAGCTTCCCGATTTACAACTCATATGAG
25951710 TATACATGTA
Statistics
Matches: 97, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
74 17 0.18
75 80 0.82
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.33
Consensus pattern (75 bp):
ACAGCTCGTATGAGCTTCCCGATTTACAACTCATATGAGATTCCCGATTTACAACTCGTATGAGC
TTACCGTTAT
Found at i:25951677 original size:25 final size:25
Alignment explanation
Indices: 25951523--25951709 Score: 175
Period size: 25 Copynumber: 7.5 Consensus size: 25
25951513 TGACACACCA
* *
25951523 CAGCTCGTATGAGCTTCTCGATTTG
1 CAGCTCGTATGAGCTTCCCGATTTT
* * * *
25951548 CAACTCTTATGAGATTCCCGATTTG
1 CAGCTCGTATGAGCTTCCCGATTTT
* *
25951573 CAACTCGTATGAGCTTCCCGATTTA
1 CAGCTCGTATGAGCTTCCCGATTTT
25951598 CAGCTCGTATGAGCTTCCCGATTTAT
1 CAGCTCGTATGAGCTTCCCGATTT-T
* *
25951624 -AACTCATATGAGCTTCCCGATTTAT
1 CAGCTCGTATGAGCTTCCCGATTT-T
*
25951649 -AGCTCGTATGAGCTTACCG-TTATT
1 CAGCTCGTATGAGCTTCCCGATT-TT
* * * *
25951673 CAGCTCGGAAGAGCTTACCG-TTTA
1 CAGCTCGTATGAGCTTCCCGATTTT
*
25951697 CAGCTCATATGAG
1 CAGCTCGTATGAG
25951710 TATACATGTA
Statistics
Matches: 139, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
24 14 0.10
25 125 0.90
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (25 bp):
CAGCTCGTATGAGCTTCCCGATTTT
Found at i:25954524 original size:30 final size:30
Alignment explanation
Indices: 25954488--25954546 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
25954478 ATTTGTGAAC
* * *
25954488 ATTGAACTAAATTAAAATTTCATGTATAAA
1 ATTGAACAAAATAAAAAATTCATGTATAAA
25954518 ATTGAACAAAATAAAAAATTCATGTATAA
1 ATTGAACAAAATAAAAAATTCATGTATAA
25954547 TTTTATATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.54, C:0.07, G:0.07, T:0.32
Consensus pattern (30 bp):
ATTGAACAAAATAAAAAATTCATGTATAAA
Found at i:25956778 original size:18 final size:18
Alignment explanation
Indices: 25956747--25956790 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
25956737 AAAAGTTTCA
*
25956747 AAATAATTTTTAAAAATCC
1 AAAT-ATTTATAAAAATCC
*
25956766 AAATATTTATAAAAATTC
1 AAATATTTATAAAAATCC
25956784 AAA-ATTT
1 AAATATTT
25956791 TTATATTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 15 0.65
19 4 0.17
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.39
Consensus pattern (18 bp):
AAATATTTATAAAAATCC
Found at i:25956780 original size:19 final size:19
Alignment explanation
Indices: 25956744--25956795 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
25956734 ACAAAAAGTT
*
25956744 TCAAAATAATTT-TTAAAAA
1 TCAAAAT-ATTTATAAAAAA
* *
25956763 TCCAAATATTTATAAAAAT
1 TCAAAATATTTATAAAAAA
*
25956782 TCAAAATTTTTATA
1 TCAAAATATTTATA
25956796 TTTTTTAAGA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
18 4 0.15
19 23 0.85
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (19 bp):
TCAAAATATTTATAAAAAA
Found at i:25962895 original size:20 final size:20
Alignment explanation
Indices: 25962867--25962909 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
25962857 AAAATGGTTT
* *
25962867 AAACTTTTTTAACTCAATTG
1 AAACATTTTTAAATCAATTG
25962887 AAACATTTTTAAATCAATTG
1 AAACATTTTTAAATCAATTG
25962907 AAA
1 AAA
25962910 AATTGCTCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.12, G:0.05, T:0.40
Consensus pattern (20 bp):
AAACATTTTTAAATCAATTG
Found at i:25963139 original size:21 final size:20
Alignment explanation
Indices: 25963112--25963167 Score: 76
Period size: 21 Copynumber: 2.8 Consensus size: 20
25963102 CAAACAATTA
25963112 TAAAAAGTATTGATACCTTT
1 TAAAAAGTATTGATACCTTT
*
25963132 TCAAAAAGTATTAATACCTTT
1 T-AAAAAGTATTGATACCTTT
**
25963153 TACCAAGTATTGATA
1 TAAAAAGTATTGATA
25963168 AAATGTCTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.39
21 19 0.61
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (20 bp):
TAAAAAGTATTGATACCTTT
Found at i:25964600 original size:29 final size:29
Alignment explanation
Indices: 25964558--25964614 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
25964548 AAAAAAAAAG
25964558 TTAAACACCAAAATGATATGTCAGTAGGA
1 TTAAACACCAAAATGATATGTCAGTAGGA
* * *
25964587 TTAAATACCAAAATGGTATGTTAGTAGG
1 TTAAACACCAAAATGATATGTCAGTAGG
25964615 GGTGGTGTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.42, C:0.11, G:0.19, T:0.28
Consensus pattern (29 bp):
TTAAACACCAAAATGATATGTCAGTAGGA
Found at i:25964996 original size:14 final size:14
Alignment explanation
Indices: 25964977--25965025 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
25964967 AAAAAGAGGG
25964977 AAAGAAAGGAGAAA
1 AAAGAAAGGAGAAA
25964991 AAAGAAAGGA-AAA
1 AAAGAAAGGAGAAA
* *
25965004 GAAG-AAGAAGAAA
1 AAAGAAAGGAGAAA
25965017 GAAAGAAAG
1 -AAAGAAAG
25965026 AAAGAAAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
12 4 0.14
13 9 0.31
14 13 0.45
15 3 0.10
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (14 bp):
AAAGAAAGGAGAAA
Found at i:25964998 original size:4 final size:4
Alignment explanation
Indices: 25964976--25965032 Score: 52
Period size: 4 Copynumber: 15.0 Consensus size: 4
25964966 AAAAAAGAGG
*
25964976 GAAA GAAA G-GA GAAA -AAA GAAA GGAAA -AGAA G-AA G-AA GAAA GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA -GAAA GA-AA GAAA GAAA GAAA GAAA
25965021 GAAA GAAA GAAA
1 GAAA GAAA GAAA
25965033 AGGTATATAT
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
3 12 0.27
4 29 0.64
5 4 0.09
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:25965001 original size:23 final size:23
Alignment explanation
Indices: 25964966--25965031 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 23
25964956 GGCAAAGAGA
* *
25964966 AAAAAAG-AGGGAAAGAAAGGAG
1 AAAAAAGAAAGGAAAGAAAGAAG
25964988 AAAAAAGAAAGGAAA-AGAAGAAG
1 AAAAAAGAAAGGAAAGA-AAGAAG
*
25965011 AAGAAAGAAA-GAAAGAAAGAA
1 AAAAAAGAAAGGAAAGAAAGAA
25965032 AAGGTATATA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
22 17 0.45
23 21 0.55
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (23 bp):
AAAAAAGAAAGGAAAGAAAGAAG
Found at i:25965030 original size:19 final size:19
Alignment explanation
Indices: 25964976--25965032 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 19
25964966 AAAAAAGAGG
*
25964976 GAAAGAAAGGAGAAA-AAA
1 GAAAGAAAGAAGAAAGAAA
25964994 GAAAGGAAAAGAAG-AAG-AA
1 GAAA-G-AAAGAAGAAAGAAA
25965013 GAAAGAAAGAAAGAAAGAAA
1 GAAAGAAAG-AAGAAAGAAA
25965033 AGGTATATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 10
0.74 0.02 0.23
Matches are distributed among these distances:
17 4 0.12
18 8 0.25
19 12 0.38
20 8 0.25
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (19 bp):
GAAAGAAAGAAGAAAGAAA
Found at i:25967765 original size:48 final size:48
Alignment explanation
Indices: 25967642--25967771 Score: 135
Period size: 48 Copynumber: 2.7 Consensus size: 48
25967632 ACTTTAGACT
* * * * * *
25967642 AACTTTGTAATTCAAATTAGATTAATCGC-A-A--AAAATTTTATATA
1 AACTTTGTAATTTAAATTAGATTCATTGCAACATTAAAATTTGAAACA
25967686 AACTTTGTACTTATTT-AATTGAGATTCATTGCAACATTAAAATTTGAAACA
1 AACTTTGTA---ATTTAAATT-AGATTCATTGCAACATTAAAATTTGAAACA
25967737 AACTTTGTAATTTAAATTAGATTCATTGCAACATT
1 AACTTTGTAATTTAAATTAGATTCATTGCAACATT
25967772 GGAGTATATT
Statistics
Matches: 71, Mismatches: 6, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
44 9 0.13
46 4 0.06
47 12 0.17
48 22 0.31
49 5 0.07
51 19 0.27
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (48 bp):
AACTTTGTAATTTAAATTAGATTCATTGCAACATTAAAATTTGAAACA
Found at i:25971473 original size:25 final size:26
Alignment explanation
Indices: 25971445--25971493 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
25971435 ATAAACATTA
*
25971445 AACTAA-ACAAAT-AATTTATAATAGT
1 AACTAAGA-AAATAAATTTAAAATAGT
25971470 AACTAAGAAAATAAATTTAAAATA
1 AACTAAGAAAATAAATTTAAAATA
25971494 AATTAAAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.61, C:0.06, G:0.04, T:0.29
Consensus pattern (26 bp):
AACTAAGAAAATAAATTTAAAATAGT
Found at i:25971502 original size:11 final size:11
Alignment explanation
Indices: 25971477--25971529 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
25971467 AGTAACTAAG
*
25971477 AAAATAAATTT
1 AAAATAAATTA
25971488 AAAATAAATTA
1 AAAATAAATTA
*
25971499 AAAACAACA-TA
1 AAAATAA-ATTA
*
25971510 AAAATAAAAATA
1 AAAAT-AAATTA
25971522 AAAATAAA
1 AAAATAAA
25971530 CAAACTACAC
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
11 26 0.72
12 10 0.28
ACGTcount: A:0.75, C:0.04, G:0.00, T:0.21
Consensus pattern (11 bp):
AAAATAAATTA
Found at i:25971952 original size:29 final size:29
Alignment explanation
Indices: 25971910--25971966 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
25971900 AGGCACCACC
*
25971910 CCTACTGACATACCATTTTGGTATTTAAT
1 CCTACTAACATACCATTTTGGTATTTAAT
25971939 CCTACTAACATACCATTTTGGTATTTAA
1 CCTACTAACATACCATTTTGGTATTTAA
25971967 ATTTTTTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.40
Consensus pattern (29 bp):
CCTACTAACATACCATTTTGGTATTTAAT
Found at i:25972957 original size:3 final size:3
Alignment explanation
Indices: 25972944--25972978 Score: 61
Period size: 3 Copynumber: 11.3 Consensus size: 3
25972934 TTGCTAGATC
25972944 TAT TAAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
25972979 TGTAGAATGG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:25973858 original size:58 final size:61
Alignment explanation
Indices: 25973723--25973886 Score: 192
Period size: 58 Copynumber: 2.7 Consensus size: 61
25973713 TGAGATTATG
* * *
25973723 TTATGATTTTTATT-AATTCATATTTTAATAATAATTATATTAAGAATGTTATTAAATTATATA
1 TTATCATTTTTATTAAATT-AT-TTTTAATAATAATTATATTAA-AATATGATTAAATTATATA
* *
25973786 TTATCATTTTTATTAAATTGTTTTTTATAATAATTATATTAAAATATGATTAAA-T-T-TA
1 TTATCATTTTTATTAAATTATTTTTAATAATAATTATATTAAAATATGATTAAATTATATA
* * * *
25973844 TTATTATTTTTATTAAATTATATTTAATAATAATCATGTTAAA
1 TTATCATTTTTATTAAATTATTTTTAATAATAATTATATTAAA
25973887 TTTTAATAAC
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
58 39 0.44
59 1 0.01
60 1 0.01
61 10 0.11
62 20 0.22
63 14 0.16
64 4 0.04
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.54
Consensus pattern (61 bp):
TTATCATTTTTATTAAATTATTTTTAATAATAATTATATTAAAATATGATTAAATTATATA
Found at i:25975050 original size:18 final size:20
Alignment explanation
Indices: 25975017--25975053 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
25975007 AAAGTGATAC
25975017 TAATAATTTAATTTTTAAAT
1 TAATAATTTAATTTTTAAAT
25975037 TAATAA-TT-ATTTTTAAA
1 TAATAATTTAATTTTTAAA
25975054 ATATTAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.53
19 2 0.12
20 6 0.35
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
TAATAATTTAATTTTTAAAT
Found at i:25979965 original size:17 final size:17
Alignment explanation
Indices: 25979943--25980003 Score: 61
Period size: 17 Copynumber: 3.5 Consensus size: 17
25979933 CTTAAAGTTT
25979943 TAATTGTATACAGCTTC
1 TAATTGTATACAGCTTC
* *
25979960 TAATTGTGT-CTTAGAGTTC
1 TAATTGTATAC--AG-CTTC
*
25979979 TAATTGTATACAGCTTT
1 TAATTGTATACAGCTTC
25979996 TAATTGTA
1 TAATTGTA
25980004 GCCCTTGATG
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
16 1 0.03
17 18 0.51
18 4 0.11
19 11 0.31
20 1 0.03
ACGTcount: A:0.28, C:0.11, G:0.15, T:0.46
Consensus pattern (17 bp):
TAATTGTATACAGCTTC
Found at i:25979983 original size:36 final size:36
Alignment explanation
Indices: 25979932--25980002 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
25979922 GATTATAAAA
*
25979932 TCTTAAAGTTTTAATTGTATACAGCTTCTAATTGTG
1 TCTTAAAGTTCTAATTGTATACAGCTTCTAATTGTG
* *
25979968 TCTTAGAGTTCTAATTGTATACAGCTTTTAATTGT
1 TCTTAAAGTTCTAATTGTATACAGCTTCTAATTGT
25980003 AGCCCTTGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.27, C:0.11, G:0.14, T:0.48
Consensus pattern (36 bp):
TCTTAAAGTTCTAATTGTATACAGCTTCTAATTGTG
Found at i:25984043 original size:36 final size:36
Alignment explanation
Indices: 25983996--25984066 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
25983986 GATTATAAAA
25983996 TCTTAGAGTTCTAATTATATACAGCTTCTAATTGTG
1 TCTTAGAGTTCTAATTATATACAGCTTCTAATTGTG
* * *
25984032 TCTTAGAGTTCTAATTGTATGCAGCTTTTAATTGT
1 TCTTAGAGTTCTAATTATATACAGCTTCTAATTGT
25984067 AGCCCTTGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.25, C:0.13, G:0.15, T:0.46
Consensus pattern (36 bp):
TCTTAGAGTTCTAATTATATACAGCTTCTAATTGTG
Found at i:25986448 original size:14 final size:14
Alignment explanation
Indices: 25986429--25986468 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
25986419 TTGATTGCCA
25986429 GTAAAATGTTTTCT
1 GTAAAATGTTTTCT
*
25986443 GTAAAATGATTTCT
1 GTAAAATGTTTTCT
*
25986457 GGAAAATGTTTT
1 GTAAAATGTTTT
25986469 ACTTTTCTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.33, C:0.05, G:0.17, T:0.45
Consensus pattern (14 bp):
GTAAAATGTTTTCT
Found at i:25986475 original size:34 final size:35
Alignment explanation
Indices: 25986437--25986503 Score: 118
Period size: 34 Copynumber: 1.9 Consensus size: 35
25986427 CAGTAAAATG
*
25986437 TTTTCTGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCTGTAAAATGATTTACTGGAAAATATTTTAC
25986471 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
25986504 CTGGTGTTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 18 0.58
35 13 0.42
ACGTcount: A:0.31, C:0.07, G:0.13, T:0.48
Consensus pattern (35 bp):
TTTTCTGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:25986477 original size:20 final size:20
Alignment explanation
Indices: 25986452--25986491 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
25986442 TGTAAAATGA
*
25986452 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
25986472 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
25986492 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:25986507 original size:14 final size:15
Alignment explanation
Indices: 25986431--25986507 Score: 61
Period size: 14 Copynumber: 5.0 Consensus size: 15
25986421 GATTGCCAGT
*
25986431 AAAATG-TTTTCTGT
1 AAAATGATTTTCTGG
25986445 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
25986459 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
25986479 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
25986494 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
25986508 TGTTTGATTG
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
14 26 0.51
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:25986605 original size:20 final size:20
Alignment explanation
Indices: 25986575--25986632 Score: 59
Period size: 18 Copynumber: 3.0 Consensus size: 20
25986565 TTTTCCGAAA
*
25986575 AAATTATTTTTACATATATT
1 AAATAATTTTTACATATATT
*
25986595 -AATAAATTTTT--ATATTTT
1 AAAT-AATTTTTACATATATT
*
25986613 AAATTATTTTTACATATATT
1 AAATAATTTTTACATATATT
25986633 GCAATGATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
18 12 0.40
19 6 0.20
20 12 0.40
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (20 bp):
AAATAATTTTTACATATATT
Found at i:25988015 original size:21 final size:21
Alignment explanation
Indices: 25987990--25988032 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
25987980 TATAAACAAA
*
25987990 AAATGCTCGTAACAGCAGCAC
1 AAATGCTCGTAACAGCAACAC
25988011 AAATGCTCGTAACAGCAACAC
1 AAATGCTCGTAACAGCAACAC
25988032 A
1 A
25988033 TAACAATCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.42, C:0.28, G:0.16, T:0.14
Consensus pattern (21 bp):
AAATGCTCGTAACAGCAACAC
Found at i:25989416 original size:14 final size:15
Alignment explanation
Indices: 25989397--25989436 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
25989387 AAGCTGGAAA
25989397 TTTACA-AAAAATAT
1 TTTACAGAAAAATAT
* *
25989411 TTTACAGTAAATTAT
1 TTTACAGAAAAATAT
25989426 TTTACAGAAAA
1 TTTACAGAAAA
25989437 GTAAAACATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 6 0.27
15 16 0.73
ACGTcount: A:0.50, C:0.07, G:0.05, T:0.38
Consensus pattern (15 bp):
TTTACAGAAAAATAT
Found at i:25989462 original size:34 final size:34
Alignment explanation
Indices: 25989404--25989469 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 34
25989394 AAATTTACAA
* *
25989404 AAAATATTTTACAGTAAATTATTTTACAGAAAAGT
1 AAAACATTTTACAGTAAATCATTTTAC-GAAAAGT
*
25989439 AAAACATTTTTCAG-AAATCATTTTACGAAAA
1 AAAACATTTTACAGTAAATCATTTTACGAAAA
25989470 ATATTTTACT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 5 0.18
34 11 0.39
35 12 0.43
ACGTcount: A:0.48, C:0.09, G:0.08, T:0.35
Consensus pattern (34 bp):
AAAACATTTTACAGTAAATCATTTTACGAAAAGT
Found at i:25997816 original size:43 final size:43
Alignment explanation
Indices: 25997748--25997850 Score: 170
Period size: 43 Copynumber: 2.4 Consensus size: 43
25997738 CCCATGTTAA
* * *
25997748 GATATTATGGGATATTATCTTTTAGCAAATTGATTCCTAATAG
1 GATATTATAGGATATTAACTCTTAGCAAATTGATTCCTAATAG
25997791 GATATTATAGGATATTAACTCTTAGCAAATTGATTCCTAATAG
1 GATATTATAGGATATTAACTCTTAGCAAATTGATTCCTAATAG
*
25997834 GATATTATAAGATATTA
1 GATATTATAGGATATTA
25997851 TTATGGGATA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.40
Consensus pattern (43 bp):
GATATTATAGGATATTAACTCTTAGCAAATTGATTCCTAATAG
Found at i:25998610 original size:18 final size:18
Alignment explanation
Indices: 25998559--25998600 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
25998549 TAAGGAAGAT
25998559 GCATGAACAATGTCATGA
1 GCATGAACAATGTCATGA
25998577 GCATGAACAATGTCATGA
1 GCATGAACAATGTCATGA
25998595 GCATGA
1 GCATGA
25998601 CCGACTTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (18 bp):
GCATGAACAATGTCATGA
Found at i:26002495 original size:43 final size:46
Alignment explanation
Indices: 26002392--26002498 Score: 148
Period size: 48 Copynumber: 2.3 Consensus size: 46
26002382 GTTAGGATAT
*
26002392 TATTATAGGATATTATCTTTTAGCAAATTGATTCATAATAGGATAGGA
1 TATTATAGGATATTATCTCTTAGCAAATTGATTCAT-ATA-GATAGGA
* *
26002440 TATTATAGGATATTATCTCTTAGTAATTTGATTC-T-TA-ATAGGA
1 TATTATAGGATATTATCTCTTAGCAAATTGATTCATATAGATAGGA
26002483 TATTATAGGATATTAT
1 TATTATAGGATATTAT
26002499 TATGGGATAT
Statistics
Matches: 56, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
43 22 0.39
45 2 0.04
47 1 0.02
48 31 0.55
ACGTcount: A:0.36, C:0.06, G:0.15, T:0.44
Consensus pattern (46 bp):
TATTATAGGATATTATCTCTTAGCAAATTGATTCATATAGATAGGA
Found at i:26004470 original size:16 final size:17
Alignment explanation
Indices: 26004449--26004481 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
26004439 TTTTTTATAA
*
26004449 AATTTTTGAATT-TTTG
1 AATTTTTAAATTATTTG
26004465 AATTTTTAAATTATTTG
1 AATTTTTAAATTATTTG
26004482 TTGATGTGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.61
Consensus pattern (17 bp):
AATTTTTAAATTATTTG
Found at i:26005094 original size:10 final size:11
Alignment explanation
Indices: 26005070--26005094 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26005060 TAAACAATGG
26005070 AAAAATAAATA
1 AAAAATAAATA
26005081 AAAAATAAATA
1 AAAAATAAATA
26005092 AAA
1 AAA
26005095 CTTAAGACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAATAAATA
Found at i:26014583 original size:40 final size:39
Alignment explanation
Indices: 26014546--26014723 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 39
26014536 ATATCCGGAC
26014546 TAAGATCCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGT
* *
26014586 TAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * *
26014626 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * * *
26014666 TAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGC
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
*
26014705 TATGTCCCGAAGGCATTTG
1 TAAGT-CCGAAGGCATTTG
26014724 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
39 33 0.27
40 85 0.70
41 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
Found at i:26014636 original size:80 final size:79
Alignment explanation
Indices: 26014552--26014723 Score: 229
Period size: 80 Copynumber: 2.2 Consensus size: 79
26014542 GGACTAAGAT
*
26014552 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
26014616 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * *
26014632 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
26014697 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
26014711 CCGAAGGCATTTG
1 CCGAAGGCATTTG
26014724 AACGAGGAGC
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
79 38 0.47
80 39 0.49
81 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:26014741 original size:79 final size:80
Alignment explanation
Indices: 26014579--26014756 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
26014569 AGATACAAAT
* * * *
26014579 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
26014644 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
26014659 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
26014723 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
26014738 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26014757 TACGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:26035362 original size:27 final size:27
Alignment explanation
Indices: 26035332--26035482 Score: 169
Period size: 27 Copynumber: 5.6 Consensus size: 27
26035322 ATATCAAGTC
* * *
26035332 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
26035359 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
** * *
26035387 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
26035414 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
26035441 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
26035468 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26035483 GTACAATTTA
Statistics
Matches: 106, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
27 81 0.76
28 25 0.24
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:26035444 original size:82 final size:81
Alignment explanation
Indices: 26035332--26035481 Score: 230
Period size: 82 Copynumber: 1.8 Consensus size: 81
26035322 ATATCAAGTC
*
26035332 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
1 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTTA
26035397 GTGCCGCATGGTCAATT
65 GTGCCGCATGGTCAATT
* * **
26035414 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
1 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
26035478 GTGC
65 GTGC
26035482 TGTACAATTT
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 17 0.27
82 45 0.73
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (81 bp):
CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAG
TGCCGCATGGTCAATT
Found at i:26041289 original size:12 final size:13
Alignment explanation
Indices: 26041272--26041300 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
26041262 CTCATACATG
26041272 AATAAATAAA-GC
1 AATAAATAAATGC
26041284 AATAAATAAATGC
1 AATAAATAAATGC
26041297 AATA
1 AATA
26041301 GTTATAGCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:26047051 original size:33 final size:33
Alignment explanation
Indices: 26047013--26047089 Score: 84
Period size: 33 Copynumber: 2.3 Consensus size: 33
26047003 CTATCTATTC
* * *
26047013 TATGTTTACTATCCCAGCAAATTATCT-TTGTTT
1 TATGTTTACTATACCAACAAACTATCTCTT-TTT
* *
26047046 TATGTTTACCATACCAACGAACTATCTCTTTTT
1 TATGTTTACTATACCAACAAACTATCTCTTTTT
*
26047079 TGTGTTTACTA
1 TATGTTTACTA
26047090 CTCCTATGAA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
33 34 0.94
34 2 0.06
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (33 bp):
TATGTTTACTATACCAACAAACTATCTCTTTTT
Found at i:26047112 original size:18 final size:18
Alignment explanation
Indices: 26047085--26047121 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
26047075 TTTTTGTGTT
*
26047085 TACTACTCCTATGAACTA
1 TACTACTCCTACGAACTA
*
26047103 TACTATTCCTACGAACTA
1 TACTACTCCTACGAACTA
26047121 T
1 T
26047122 CTCCATGGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.35
Consensus pattern (18 bp):
TACTACTCCTACGAACTA
Found at i:26053498 original size:40 final size:38
Alignment explanation
Indices: 26053454--26053554 Score: 116
Period size: 40 Copynumber: 2.6 Consensus size: 38
26053444 CGAATATAAT
*
26053454 AATTATAATTACCATAATTATAATAATTTTTGA-CCAAAAA
1 AATTATAATTACCATAATTATAATAATATTTGATCC---AA
* *
26053494 AATTACAATTA-CAGTAATTATAATAATATTTGATCCTA
1 AATTATAATTACCA-TAATTATAATAATATTTGATCCAA
*
26053532 AATTATAATTACAATAATTATAA
1 AATTATAATTACCATAATTATAA
26053555 CAAGGATTTC
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
38 20 0.38
39 3 0.06
40 28 0.53
41 2 0.04
ACGTcount: A:0.50, C:0.09, G:0.03, T:0.39
Consensus pattern (38 bp):
AATTATAATTACCATAATTATAATAATATTTGATCCAA
Found at i:26055821 original size:13 final size:13
Alignment explanation
Indices: 26055803--26055828 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26055793 CATATATATT
26055803 TTATAAAAAAATA
1 TTATAAAAAAATA
26055816 TTATAAAAAAATA
1 TTATAAAAAAATA
26055829 AAAACATACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
TTATAAAAAAATA
Found at i:26058595 original size:17 final size:18
Alignment explanation
Indices: 26058564--26058605 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
26058554 GAGAAAATGA
26058564 AAAATGAAGAAAT-GGAG
1 AAAATGAAGAAATGGGAG
26058581 AAAATGAA-AATATGGGAG
1 AAAATGAAGAA-ATGGGAG
*
26058599 CAAATGA
1 AAAATGA
26058606 GTGGTATGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 2 0.09
17 10 0.45
18 10 0.45
ACGTcount: A:0.57, C:0.02, G:0.26, T:0.14
Consensus pattern (18 bp):
AAAATGAAGAAATGGGAG
Found at i:26059175 original size:15 final size:15
Alignment explanation
Indices: 26059151--26059185 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
26059141 CACTCTCTCA
*
26059151 TTTTATTAACCCAAT
1 TTTTACTAACCCAAT
26059166 TTTTACTAACCCAAT
1 TTTTACTAACCCAAT
26059181 TTTTA
1 TTTTA
26059186 GGATGTGGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.31, C:0.20, G:0.00, T:0.49
Consensus pattern (15 bp):
TTTTACTAACCCAAT
Found at i:26065532 original size:41 final size:41
Alignment explanation
Indices: 26065484--26065566 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
26065474 ATTCAAGTGA
26065484 ATTATGTTTGAATGCACAAACATGTGTTGTTAATGGTGCTT
1 ATTATGTTTGAATGCACAAACATGTGTTGTTAATGGTGCTT
26065525 ATTATGTTTGAATGCACAAACATGTGTTGTTAATGGTGCTT
1 ATTATGTTTGAATGCACAAACATGTGTTGTTAATGGTGCTT
26065566 A
1 A
26065567 GGCTTGTGCC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.41
Consensus pattern (41 bp):
ATTATGTTTGAATGCACAAACATGTGTTGTTAATGGTGCTT
Found at i:26073529 original size:27 final size:27
Alignment explanation
Indices: 26073499--26073550 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
26073489 CCAATGATTC
26073499 AGGGAATCAGCACTTAGCAACCCCTCG
1 AGGGAATCAGCACTTAGCAACCCCTCG
26073526 AGGGAATCAGCACTTAGCAACCCCT
1 AGGGAATCAGCACTTAGCAACCCCT
26073551 TCACATTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.31, C:0.33, G:0.21, T:0.15
Consensus pattern (27 bp):
AGGGAATCAGCACTTAGCAACCCCTCG
Found at i:26073579 original size:101 final size:101
Alignment explanation
Indices: 26073425--26073725 Score: 469
Period size: 102 Copynumber: 3.0 Consensus size: 101
26073415 CAATGAGTCG
**
26073425 GGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACGGTGGGTTCAGCACTTAGCAACCAC
1 GGGAATCAGCACTTAGCAACCCC-TTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCAC
*
26073490 CAATGATTCAGGGAATCAGCACTTAGCAACCCCTCGA
65 CAATGAATCAGGGAATCAGCACTTAGCAACCCCTCGA
26073527 GGGAATCAGCACTTAGCAACCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCACC
1 GGGAATCAGCACTTAGCAACCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCACC
* * * * *
26073592 AATGAGTCGGGGAATCAGCAGTTAGCAACCCCTTGG
66 AATGAATCAGGGAATCAGCACTTAGCAACCCCTCGA
* *
26073628 GGGAATCAGCACTTAGCAACCCCCTTCACATTCAAGATACGGCGGAATCAGCACTTAGCAACCAC
1 GGGAATCAGCACTTAGCAA-CCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCAC
*
26073693 CAACGAAT-AGGGGAATCAGCACTTAGCAACCCC
65 CAATGAATCA-GGGAATCAGCACTTAGCAACCCC
26073726 CTTTTTATTC
Statistics
Matches: 184, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
101 90 0.49
102 94 0.51
ACGTcount: A:0.32, C:0.29, G:0.21, T:0.19
Consensus pattern (101 bp):
GGGAATCAGCACTTAGCAACCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCACC
AATGAATCAGGGAATCAGCACTTAGCAACCCCTCGA
Found at i:26079029 original size:50 final size:50
Alignment explanation
Indices: 26078918--26079164 Score: 221
Period size: 50 Copynumber: 4.8 Consensus size: 50
26078908 ATTTGGGTAA
**
26078918 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGTGTCATTGAGATTATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATT-G-G-CACCGAG---ATG
* * *
26078974 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* *** * *
26079024 AGAGGTCCCCCATAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * *
26079074 AGA-ACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA--GTACAAG
1 AGAGA-TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATG
* * * * *
26079123 AAACATCCCATATAAGACCATGTCTAGGACATGGCTTTGGCA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
26079165 TGTTATTATC
Statistics
Matches: 161, Mismatches: 27, Indels: 13
0.80 0.13 0.06
Matches are distributed among these distances:
48 1 0.01
49 37 0.23
50 81 0.50
53 5 0.03
54 1 0.01
55 1 0.01
56 35 0.22
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (50 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:26079114 original size:100 final size:105
Alignment explanation
Indices: 26078930--26079115 Score: 256
Period size: 100 Copynumber: 1.8 Consensus size: 105
26078920 AGATCCCATG
* **
26078930 TAAGACCATGTCTGGGACATGGCATTGGTGTCATTGAGATTATGAGAGGTCCCATGTAAGACCAT
1 TAAGACCATGTCTGGGACATGGCATTGGTGTCA-TCAGATTATGAGAACTCCCATGTAAGACCAT
* *
26078995 GTCTAGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCA
65 ATCTAGGACATGGCATTGGCACCGAGATGAGAGGTCCCCCA
*
26079036 TAAGACCATGTCTGGGACATGGCA-TGG-G-CA-CCGA-TATGAGAACTCCCATGTAAGACCATA
1 TAAGACCATGTCTGGGACATGGCATTGGTGTCATCAGATTATGAGAACTCCCATGTAAGACCATA
* *
26079096 TCTGGGATATGGCATTGGCA
66 TCTAGGACATGGCATTGGCA
26079116 GTACAAGAAA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
100 40 0.56
101 2 0.03
103 2 0.03
104 1 0.01
105 3 0.04
106 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (105 bp):
TAAGACCATGTCTGGGACATGGCATTGGTGTCATCAGATTATGAGAACTCCCATGTAAGACCATA
TCTAGGACATGGCATTGGCACCGAGATGAGAGGTCCCCCA
Found at i:26085739 original size:26 final size:26
Alignment explanation
Indices: 26085710--26085760 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
26085700 TTATTAAATT
*
26085710 TTTAATCTAAATTGAATTAAATCAAA
1 TTTAATCTAAATTGAATCAAATCAAA
* * *
26085736 TTTAATTTTAATTTAATCAAATCAA
1 TTTAATCTAAATTGAATCAAATCAA
26085761 TTTTTTAAGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.43
Consensus pattern (26 bp):
TTTAATCTAAATTGAATCAAATCAAA
Found at i:26085765 original size:21 final size:21
Alignment explanation
Indices: 26085724--26085764 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
26085714 ATCTAAATTG
*
26085724 AATTAAATCAAATTTAATTTT
1 AATTAAATCAAATTCAATTTT
*
26085745 AATTTAATCAAA-TCAATTTT
1 AATTAAATCAAATTCAATTTT
26085765 TTAAGTCTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.46
Consensus pattern (21 bp):
AATTAAATCAAATTCAATTTT
Found at i:26089773 original size:13 final size:13
Alignment explanation
Indices: 26089755--26089780 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26089745 GGCTTCCCCT
26089755 TTCCTTCTGTTTC
1 TTCCTTCTGTTTC
26089768 TTCCTTCTGTTTC
1 TTCCTTCTGTTTC
26089781 AGTTTAGCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.31, G:0.08, T:0.62
Consensus pattern (13 bp):
TTCCTTCTGTTTC
Found at i:26089825 original size:13 final size:13
Alignment explanation
Indices: 26089807--26089832 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26089797 AACTTAGTCG
26089807 TTCCTTCTGTTTC
1 TTCCTTCTGTTTC
26089820 TTCCTTCTGTTTC
1 TTCCTTCTGTTTC
26089833 AGTTTAGCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.31, G:0.08, T:0.62
Consensus pattern (13 bp):
TTCCTTCTGTTTC
Found at i:26090640 original size:127 final size:127
Alignment explanation
Indices: 26090457--26090711 Score: 492
Period size: 127 Copynumber: 2.0 Consensus size: 127
26090447 TTATCCAGCT
*
26090457 TTAGTGAGATGTTTCTGATTTAAAGATTCTAAATTACAGCTTGCATAGATATTCAGTGGTTGCTG
1 TTAGTGAGATGTTTCTGATTTAAAGATTCTAAATTACAGCTTGCATAGATATTCAGTGGCTGCTG
*
26090522 GAAAAGGAAAAGGGGGAAGTGATTTTATAATTAGAAACTGATTCACCGATAAACCATGTGAA
66 GAAAAGGAAAAGGGGGAAGTGATTTTATAATTAGAAACTAATTCACCGATAAACCATGTGAA
26090584 TTAGTGAGATGTTTCTGATTTAAAGATTCTAAATTACAGCTTGCATAGATATTCAGTGGCTGCTG
1 TTAGTGAGATGTTTCTGATTTAAAGATTCTAAATTACAGCTTGCATAGATATTCAGTGGCTGCTG
26090649 GAAAAGGAAAAGGGGGAAGTGATTTTATAATTAGAAACTAATTCACCGATAAACCATGTGAA
66 GAAAAGGAAAAGGGGGAAGTGATTTTATAATTAGAAACTAATTCACCGATAAACCATGTGAA
26090711 T
1 T
26090712 ACTTTAGCTC
Statistics
Matches: 126, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
127 126 1.00
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.31
Consensus pattern (127 bp):
TTAGTGAGATGTTTCTGATTTAAAGATTCTAAATTACAGCTTGCATAGATATTCAGTGGCTGCTG
GAAAAGGAAAAGGGGGAAGTGATTTTATAATTAGAAACTAATTCACCGATAAACCATGTGAA
Found at i:26092608 original size:24 final size:26
Alignment explanation
Indices: 26092584--26092633 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
26092574 ACAACGCATT
26092584 AATTAAAAATATT-TTTAAATAATTAA
1 AATTAAAAATATTATTTAAATAATT-A
* *
26092610 AATTAAAAATTTTATTTTAATAAT
1 AATTAAAAATATTATTTAAATAAT
26092634 ATTACATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 12 0.57
27 9 0.43
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (26 bp):
AATTAAAAATATTATTTAAATAATTA
Found at i:26092781 original size:16 final size:16
Alignment explanation
Indices: 26092757--26092787 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26092747 GTTATTATGA
*
26092757 TTGATTAAAAAACAAC
1 TTGAGTAAAAAACAAC
26092773 TTGAGTAAAAAACAA
1 TTGAGTAAAAAACAA
26092788 ATATTTGGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.10, G:0.10, T:0.23
Consensus pattern (16 bp):
TTGAGTAAAAAACAAC
Found at i:26096096 original size:91 final size:91
Alignment explanation
Indices: 26095970--26096177 Score: 292
Period size: 91 Copynumber: 2.3 Consensus size: 91
26095960 TTGATTTTAG
* *
26095970 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
* *
26096035 ATTTAAT-ATTAATTATTTTAAATTGTA
65 ATGTAATAATT-ATTATTTTAAATTATA
* *
26096062 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTATA
*
26096127 TGTAATAATTATTTTTTTAAATTATA
66 TGTAATAATTATTATTTTAAATTATA
* * * *
26096153 CAAATTCATAAAATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
26096178 GTTATAATTA
Statistics
Matches: 104, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
91 85 0.82
92 19 0.18
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTATA
TGTAATAATTATTATTTTAAATTATA
Found at i:26096337 original size:123 final size:120
Alignment explanation
Indices: 26096193--26096608 Score: 667
Period size: 120 Copynumber: 3.4 Consensus size: 120
26096183 AATTATTTTA
* *
26096193 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTT-TCA-
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT--AATTTAT-AT
* * *
26096255 TTTATAGTATCATATATTATAATTTGAGTAAATTCGTATAAGAATATTAATTATTAAG
63 TTTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* * *
26096313 AATTTTGCTCCATAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATAT
1 AATTTT-AT-TA-AATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATAT
*
26096378 TTTACAGTATCATATAATATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
63 TTTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
26096436 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
26096501 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
26096556 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
26096609 TAAATGTGAT
Statistics
Matches: 277, Mismatches: 13, Indels: 12
0.92 0.04 0.04
Matches are distributed among these distances:
120 167 0.60
121 2 0.01
122 8 0.03
123 98 0.35
124 2 0.01
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:26096356 original size:15 final size:15
Alignment explanation
Indices: 26096325--26096372 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
26096315 TTTTGCTCCA
26096325 TAATTAT-ATAT-TT
1 TAATTATAATATATT
26096338 TAATTATAATATATT
1 TAATTATAATATATT
*
26096353 TAATAATAAT-TATGT
1 TAATTATAATATAT-T
26096368 TAATT
1 TAATT
26096373 TATATTTTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
13 7 0.23
14 7 0.23
15 16 0.53
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TAATTATAATATATT
Found at i:26096476 original size:15 final size:15
Alignment explanation
Indices: 26096441--26096492 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
26096431 TTAAGAATTT
*
26096441 TATTAAATTAT-ATA
1 TATTTAATTATAATA
26096455 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
26096469 TATTTAATAATAAT-
1 TATTTAATTATAATA
26096483 TATGTTAATT
1 TAT-TTAATT
26096493 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:26096585 original size:18 final size:17
Alignment explanation
Indices: 26096557--26096591 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26096547 ATTATTAAGA
*
26096557 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
26096574 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
26096592 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:26096717 original size:157 final size:157
Alignment explanation
Indices: 26096545--26096862 Score: 591
Period size: 157 Copynumber: 2.0 Consensus size: 157
26096535 ATAAGAATAT
26096545 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
*
26096610 AAATGTGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
26096675 TAATAATTTACCAAAACAAATTTCTGC
131 TAATAATTTACCAAAACAAATTTATGC
*
26096702 TAATTATTAATAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
*
26096767 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAATAA
66 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
26096832 TAATCATTTACCAAAACAAATTTATGC
131 TAATAATTTACCAAAACAAATTTATGC
26096859 TAAT
1 TAAT
26096863 GGTATTCTAG
Statistics
Matches: 156, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
157 156 1.00
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:26096742 original size:18 final size:17
Alignment explanation
Indices: 26096714--26096748 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26096704 ATTATTAATA
*
26096714 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
26096731 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
26096749 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:26096782 original size:75 final size:75
Alignment explanation
Indices: 26096546--26096784 Score: 182
Period size: 75 Copynumber: 3.1 Consensus size: 75
26096536 TAAGAATATT
*
26096546 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
1 AATTATTAATAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
*
26096611 AATGTGATTA
66 AATATGATTA
* * * * * * * *
26096621 AATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATA-A--CAATAATAATT
1 AATTATTAATAATT--T--TATTAA-ATTA-TATATTTTAATTAA-AATATATTTAATAATAATT
**** * * *
26096683 -TACCAAAACAAAT-TTCTGCT
59 AT-GTTTAA-ATATGAT-T--A
26096703 AATTATTAATAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
1 AATTATTAATAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
26096768 AATATGATTA
66 AATATGATTA
26096778 AATTATT
1 AATTATT
26096785 TATTATTGAT
Statistics
Matches: 115, Mismatches: 32, Indels: 34
0.64 0.18 0.19
Matches are distributed among these distances:
75 22 0.19
76 12 0.10
77 8 0.07
78 19 0.17
79 19 0.17
80 7 0.06
81 12 0.10
82 16 0.14
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (75 bp):
AATTATTAATAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
AATATGATTA
Found at i:26097008 original size:16 final size:16
Alignment explanation
Indices: 26096987--26097019 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
26096977 TTGCTATTAT
*
26096987 ACCTCTAATTCAATAC
1 ACCTCTAATCCAATAC
26097003 ACCTCTAATCCAATAC
1 ACCTCTAATCCAATAC
26097019 A
1 A
26097020 GCGAACCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.33, G:0.00, T:0.27
Consensus pattern (16 bp):
ACCTCTAATCCAATAC
Found at i:26107909 original size:86 final size:85
Alignment explanation
Indices: 26107755--26107919 Score: 219
Period size: 86 Copynumber: 1.9 Consensus size: 85
26107745 AGCTCGTACA
*
26107755 ATGCCAACGTCCCAGACGAGGTCTTACATGTAATCAAAAATCGATGCCACTATCCCAAACAGGGT
1 ATGCCAACGTCCCAGACGAGGTCTTACACGTAATCAAAAATCGATGCCACTATCCCAAACAGGGT
*
26107820 CTTACACGAAATCATATACG
66 CTTACACAAAATCATATACG
* ** *
26107840 ATGCCAATGTCCCAGAC-ATGGTCTTACACGTAAATCTCAAATCGATGCCAAC-ATCCCAGAC-G
1 ATGCCAACGTCCCAGACGA-GGTCTTACACGT-AATCAAAAATCGATGCC-ACTATCCCAAACAG
26107902 TGGTCTTACACAAAATCA
63 -GGTCTTACACAAAATCA
26107920 CATATCAGAA
Statistics
Matches: 70, Mismatches: 6, Indels: 7
0.84 0.07 0.08
Matches are distributed among these distances:
84 1 0.01
85 28 0.40
86 39 0.56
87 2 0.03
ACGTcount: A:0.35, C:0.28, G:0.16, T:0.22
Consensus pattern (85 bp):
ATGCCAACGTCCCAGACGAGGTCTTACACGTAATCAAAAATCGATGCCACTATCCCAAACAGGGT
CTTACACAAAATCATATACG
Found at i:26114924 original size:15 final size:15
Alignment explanation
Indices: 26114904--26114932 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
26114894 GATTACCGTG
26114904 TTATTTAATTTGTTT
1 TTATTTAATTTGTTT
26114919 TTATTTAATTTGTT
1 TTATTTAATTTGTT
26114933 GCTATGGGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.72
Consensus pattern (15 bp):
TTATTTAATTTGTTT
Found at i:26119440 original size:11 final size:11
Alignment explanation
Indices: 26119410--26119484 Score: 78
Period size: 11 Copynumber: 6.7 Consensus size: 11
26119400 AAACTAATCC
26119410 TCTCTCAATTAT
1 TCTCTCAATT-T
*
26119422 TTTCTCAATTT
1 TCTCTCAATTT
*
26119433 TCTCTCAAATT
1 TCTCTCAATTT
*
26119444 GCTCTCAATTT
1 TCTCTCAATTT
*
26119455 GCTCTCAATTT
1 TCTCTCAATTT
* * *
26119466 CCTTTCAAATT
1 TCTCTCAATTT
26119477 TCTCTCAA
1 TCTCTCAA
26119485 ATCCATATTT
Statistics
Matches: 53, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
11 44 0.83
12 9 0.17
ACGTcount: A:0.23, C:0.27, G:0.03, T:0.48
Consensus pattern (11 bp):
TCTCTCAATTT
Found at i:26123471 original size:125 final size:125
Alignment explanation
Indices: 26123145--26123582 Score: 662
Period size: 125 Copynumber: 3.5 Consensus size: 125
26123135 AACATGCTAA
* * *
26123145 TGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCATAAATTCTTCTGATAAAGCATCCTACTTGA
1 TGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGCTTGA
* * *
26123210 AGCATTTTTTATACTATTCACTCAGAAACGTCAACTCGAAATTA-TTTTTCAGAACCTAC
66 AGCATTTTTTATACTATTCGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCAAC
* * *
26123269 TTTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTATTCTGATAAAGCATCTTGCTTGA
1 TGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGCTTGA
* *
26123334 AGCATTTTTTTATACTATTCGCTCAGAAACGTCAACTCAAAATTATTTTTTAAGGACCAAC
66 AGCA-TTTTTTATACTATTCGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCAAC
*
26123395 TGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTTAGAAATTCTTCTGATAAAGCATCCTGCTTGA
1 TGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGCTTGA
* * *
26123460 AGCGTTTTTTATACTATTCGCTCATAAATGTCAACTCGAAATTATTTTTTCAGGACCAAC
66 AGCATTTTTTATACTATTCGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCAAC
** * * * * *
26123520 TGTAGCAAAAAAGCATCCACGTGGGCACGATTTAAAAAATTCTTCTGATAAAGCATCATGCTT
1 TGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGCTT
26123583 TGATTTTATC
Statistics
Matches: 285, Mismatches: 27, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
124 63 0.22
125 146 0.51
126 76 0.27
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (125 bp):
TGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGCTTGA
AGCATTTTTTATACTATTCGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCAAC
Found at i:26123743 original size:21 final size:22
Alignment explanation
Indices: 26123700--26123745 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
26123690 ATTTCTCTAA
* *
26123700 AACCCTAAAAACCTTAAACCCT
1 AACCCTAAAAACCTCAAAACCT
*
26123722 AACCCTAAAAGCC-CAAAACCT
1 AACCCTAAAAACCTCAAAACCT
26123743 AAC
1 AAC
26123746 GTGGAGAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.48, C:0.37, G:0.02, T:0.13
Consensus pattern (22 bp):
AACCCTAAAAACCTCAAAACCT
Found at i:26124011 original size:28 final size:29
Alignment explanation
Indices: 26123946--26124011 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
26123936 ATTTTTGGGG
*
26123946 AAAAAGGGCCCATTCCGGTAAATAATAAA
1 AAAAAGGGCCCATTCCGATAAATAATAAA
* ** * *
26123975 ATACCGGGCCCATTTCGATAAAT-TTAAA
1 AAAAAGGGCCCATTCCGATAAATAATAAA
26124003 AAAAAGGGC
1 AAAAAGGGC
26124012 TTTTTTTGGT
Statistics
Matches: 28, Mismatches: 9, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
28 10 0.36
29 18 0.64
ACGTcount: A:0.44, C:0.18, G:0.18, T:0.20
Consensus pattern (29 bp):
AAAAAGGGCCCATTCCGATAAATAATAAA
Found at i:26125681 original size:76 final size:76
Alignment explanation
Indices: 26125532--26125806 Score: 273
Period size: 74 Copynumber: 3.7 Consensus size: 76
26125522 TAAAAAAAAT
* *
26125532 TATTGTAT-TTTACATCAATAATATA-A-TTATTTACAGTCTACAAAAAAAATTTAAAAATTGTT
1 TATTGTATCTTTACATCAATAATATATACTTATTTACAATCTACGAAAAAAA-TTAAAAATTGTT
* *
26125594 TGTTTTATATTC
65 TGTATTGTATTC
* * * **
26125606 TATTGTAT-TTTATATCAATAATATATACTTATTTACAATCTATGAAAACAATTAAAGTTTTGTT
1 TATTGTATCTTTACATCAATAATATATACTTATTTACAATCTACGAAAAAAATTAAA-AATTGTT
26125670 TGTATTGTATTC
65 TGTATTGTATTC
* * *
26125682 TATCGTATGCCTTT---TCAAT-A-ATATACTTATTTACAATCAACGAAAAAAATGAAAAAAATT
1 TATTGTAT--CTTTACATCAATAATATATACTTATTTACAATCTACGAAAAAAAT--TAAAAATT
*
26125742 GTTTATATTGTATTC
62 GTTTGTATTGTATTC
* * * *
26125757 TACTAT-TCTTTACATCAATAATATATACTTATTTACAATTTACCAAAAAA
1 TATTGTATCTTTACATCAATAATATATACTTATTTACAATCTACGAAAAAA
26125807 TGAGAAGTAA
Statistics
Matches: 165, Mismatches: 23, Indels: 23
0.78 0.11 0.11
Matches are distributed among these distances:
72 4 0.02
74 52 0.32
75 31 0.19
76 50 0.30
77 25 0.15
79 3 0.02
ACGTcount: A:0.40, C:0.11, G:0.06, T:0.44
Consensus pattern (76 bp):
TATTGTATCTTTACATCAATAATATATACTTATTTACAATCTACGAAAAAAATTAAAAATTGTTT
GTATTGTATTC
Found at i:26125842 original size:4 final size:4
Alignment explanation
Indices: 26125833--26125866 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
26125823 AATGAACAAA
*
26125833 TTGT TTGT TTGT TTGT TTGT TTGT TTGT ATGT TT
1 TTGT TTGT TTGT TTGT TTGT TTGT TTGT TTGT TT
26125867 ATAAAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.03, C:0.00, G:0.24, T:0.74
Consensus pattern (4 bp):
TTGT
Found at i:26129471 original size:26 final size:25
Alignment explanation
Indices: 26129413--26129474 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 25
26129403 TTTCTCACTC
*
26129413 CAATTTTACCCTACTAAAATTTTGA
1 CAATTTTACCCTACTAAAATTTTAA
* * **
26129438 TAAATTTACCCTTGGTAAAATTTTAA
1 CAATTTTACCC-TACTAAAATTTTAA
26129464 CAATTTTACCC
1 CAATTTTACCC
26129475 CCAATAAAAT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
25 9 0.31
26 20 0.69
ACGTcount: A:0.35, C:0.19, G:0.05, T:0.40
Consensus pattern (25 bp):
CAATTTTACCCTACTAAAATTTTAA
Found at i:26132000 original size:26 final size:25
Alignment explanation
Indices: 26131942--26132003 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 25
26131932 TTTCTCACTC
*
26131942 CAATTTTACCCTACTAAAATTTTGA
1 CAATTTTACCCTACTAAAATTTTAA
* * **
26131967 TAAATTTACCCTTGGTAAAATTTTAA
1 CAATTTTACCC-TACTAAAATTTTAA
26131993 CAATTTTACCC
1 CAATTTTACCC
26132004 CCAATAAAAT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
25 9 0.31
26 20 0.69
ACGTcount: A:0.35, C:0.19, G:0.05, T:0.40
Consensus pattern (25 bp):
CAATTTTACCCTACTAAAATTTTAA
Found at i:26134092 original size:28 final size:28
Alignment explanation
Indices: 26134029--26134154 Score: 164
Period size: 28 Copynumber: 4.5 Consensus size: 28
26134019 ATATTAAGTC
*
26134029 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
26134056 CGCACACTTAGTACTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
26134084 TGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
26134112 TGCACACTTAGTGCTATACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
26134141 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26134155 CAATCTCATG
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
27 21 0.24
28 48 0.55
29 18 0.21
ACGTcount: A:0.34, C:0.27, G:0.11, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:26137662 original size:26 final size:25
Alignment explanation
Indices: 26137604--26137665 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 25
26137594 TTTCTTACTC
*
26137604 CAATTTTACCCTACTAAAATTTTGA
1 CAATTTTACCCTACTAAAATTTTAA
* * **
26137629 TAAATTTACCCTTGGTAAAATTTTAA
1 CAATTTTACCC-TACTAAAATTTTAA
26137655 CAATTTTACCC
1 CAATTTTACCC
26137666 CCAATAAAAT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
25 9 0.31
26 20 0.69
ACGTcount: A:0.35, C:0.19, G:0.05, T:0.40
Consensus pattern (25 bp):
CAATTTTACCCTACTAAAATTTTAA
Found at i:26141733 original size:27 final size:28
Alignment explanation
Indices: 26141674--26141733 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 28
26141664 TCTTAGGTTA
* * *
26141674 TGCCATGAAAGCCTTCCTTTTCAGATAT
1 TGCCATGAAAGACTTCCTTTACAGAGAT
*
26141702 AGCCATG-AAGACTTCCTTTACAGAGAT
1 TGCCATGAAAGACTTCCTTTACAGAGAT
26141729 TGCCA
1 TGCCA
26141734 CAAAGGCTGT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 21 0.78
28 6 0.22
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (28 bp):
TGCCATGAAAGACTTCCTTTACAGAGAT
Found at i:26143473 original size:21 final size:21
Alignment explanation
Indices: 26143447--26143486 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
26143437 GAAAGTTGCT
26143447 CCTAAAAACAAGATTTTCTTC
1 CCTAAAAACAAGATTTTCTTC
26143468 CCTAAAAACAAGATTTTCT
1 CCTAAAAACAAGATTTTCT
26143487 AAGTTTCATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.23, G:0.05, T:0.33
Consensus pattern (21 bp):
CCTAAAAACAAGATTTTCTTC
Found at i:26153185 original size:21 final size:21
Alignment explanation
Indices: 26153161--26153200 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
26153151 CATGTATAGA
26153161 CTATTGTGGTTAAATGTTGGG
1 CTATTGTGGTTAAATGTTGGG
26153182 CTATTGTGGTTAAATGTTG
1 CTATTGTGGTTAAATGTTG
26153201 ATGTGTGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.05, G:0.30, T:0.45
Consensus pattern (21 bp):
CTATTGTGGTTAAATGTTGGG
Found at i:26159109 original size:57 final size:57
Alignment explanation
Indices: 26159014--26159164 Score: 140
Period size: 57 Copynumber: 2.6 Consensus size: 57
26159004 GGAGTTATCT
* * * * * **
26159014 CTTACATTTCTAGAGTTTTGCTACAAAGGTTGTTCTTTATGAGGTTCACCACAAAGG
1 CTTACCTTTCTAGAGTTCTGCTACAAAGGCTATCCTTTAACAGGTTCACCACAAAGG
* * ** * *
26159071 CTTACCTTTTTAGAGTTCTGCTACAATGGCTATCCTTTAACAGGTTTGCCATAATGG
1 CTTACCTTTCTAGAGTTCTGCTACAAAGGCTATCCTTTAACAGGTTCACCACAAAGG
* * * * *
26159128 CTTACCTTTCCAAAGTTTTGCGACAAAGGCTTTCCTT
1 CTTACCTTTCTAGAGTTCTGCTACAAAGGCTATCCTT
26159165 CTCCTAGTGA
Statistics
Matches: 74, Mismatches: 20, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
57 74 1.00
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (57 bp):
CTTACCTTTCTAGAGTTCTGCTACAAAGGCTATCCTTTAACAGGTTCACCACAAAGG
Found at i:26159356 original size:54 final size:53
Alignment explanation
Indices: 26159275--26159377 Score: 143
Period size: 54 Copynumber: 1.9 Consensus size: 53
26159265 CCTTCCTTAA
* *
26159275 TTTTTTTCATATGATACTATAACCCACCAGTTACAGTCTTACATGATATGGTC
1 TTTTTTTCATATGATACCATAACCCACCAATTACAGTCTTACATGATATGGTC
* * **
26159328 TTTTTTCTCATATGGTTCCATAACCCACCAATTATGGTCTTACATGATAT
1 TTTTTT-TCATATGATACCATAACCCACCAATTACAGTCTTACATGATAT
26159378 AGTCCTTCAG
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 6 0.14
54 37 0.86
ACGTcount: A:0.27, C:0.21, G:0.11, T:0.41
Consensus pattern (53 bp):
TTTTTTTCATATGATACCATAACCCACCAATTACAGTCTTACATGATATGGTC
Found at i:26161692 original size:12 final size:12
Alignment explanation
Indices: 26161675--26161699 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26161665 CACCATAGTT
26161675 AAGATCATGTCA
1 AAGATCATGTCA
26161687 AAGATCATGTCA
1 AAGATCATGTCA
26161699 A
1 A
26161700 TAATTTTGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.16, T:0.24
Consensus pattern (12 bp):
AAGATCATGTCA
Found at i:26170631 original size:40 final size:40
Alignment explanation
Indices: 26170601--26170770 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
26170591 GGACTAAGAT
* *
26170601 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* *
26170641 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* ** * *
26170681 CCGAAGGCATTCGTGCGAGTTGTTGAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
26170721 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
26170760 CCGAAGGCATT
1 CCGAAGGCATT
26170771 TGAACGAGGA
Statistics
Matches: 117, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 33 0.28
40 84 0.72
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:26170685 original size:80 final size:79
Alignment explanation
Indices: 26170548--26170772 Score: 245
Period size: 80 Copynumber: 2.8 Consensus size: 79
26170538 TTGAATGCTG
* * * * * * *
26170548 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTAATAAATCCGGGCTAAG-TCCCGAAGGCATT
26170612 TGTGCGAGATACTAAA
64 TGTGCGAGATACTAAA
* * *
26170628 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTT
* ** *
26170693 GTGCGAGTTGTTGAA
65 GTGCGAGATACTAAA
* * * * *
26170708 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTTG
26170773 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
79 36 0.30
80 82 0.67
81 4 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:26170790 original size:79 final size:80
Alignment explanation
Indices: 26170626--26170805 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 80
26170616 CGAGATACTA
* * *
26170626 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAT
1 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** ** *
26170691 TCGTGCGAGTTGTTG
66 TCGAACGAGGAGCTG
* * *
26170706 AATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCAT
1 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
*
26170770 TTGAACGAGGAGCT-
66 TCGAACGAGGAGCTG
*
26170784 ATATCC-GGTTAAATCCCGAAGG
1 A-ATCCGGGTTAAGTCCCGAAGG
26170806 TACGTGATTT
Statistics
Matches: 85, Mismatches: 14, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
78 15 0.18
79 45 0.53
80 25 0.29
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (80 bp):
AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
TCGAACGAGGAGCTG
Found at i:26178307 original size:21 final size:21
Alignment explanation
Indices: 26178281--26178333 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
26178271 ACTGCCCTCG
*
26178281 ATGTCGCGACACGACCCTCCT
1 ATGTCGCGACAAGACCCTCCT
* *
26178302 ATGTCGTGACAAGGCCCTCCT
1 ATGTCGCGACAAGACCCTCCT
*
26178323 ATGTCACGACA
1 ATGTCGCGACA
26178334 TACCCCTTGG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.23, C:0.36, G:0.21, T:0.21
Consensus pattern (21 bp):
ATGTCGCGACAAGACCCTCCT
Found at i:26180619 original size:102 final size:102
Alignment explanation
Indices: 26180443--26180673 Score: 329
Period size: 102 Copynumber: 2.3 Consensus size: 102
26180433 ACACGTGTGT
* * **
26180443 AGTACTGTGTGAAGGCTACTATGTGTATCGATAAATAATGGTCACATGTGTAGTACTAAGTGAAG
1 AGTACTGTGTGAAGGCTACTACGTGTACCGATAAATAATGAACACATGTGTAGTACTAAGTGAAG
*
26180508 GCTACTATGTGTACC-GAGAAGTTTTGGTCACATGTAC
66 GCTACTATGTGTACCGGA-AAGATTTGGTCACATGTAC
* *
26180545 AGTACTGCGTGAAGGCTACTACGTGTACCGATAAATGATGAACACATGTGTAGTACTAAGTGAAG
1 AGTACTGTGTGAAGGCTACTACGTGTACCGATAAATAATGAACACATGTGTAGTACTAAGTGAAG
* **
26180610 GCTACTATGTGTACCGGAAAGATTTGGTCACGTGTGT
66 GCTACTATGTGTACCGGAAAGATTTGGTCACATGTAC
* * *
26180647 AGTACTATGTGAAGGTTTCTACGTGTA
1 AGTACTGTGTGAAGGCTACTACGTGTA
26180674 ACGGATGATA
Statistics
Matches: 114, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
102 112 0.98
103 2 0.02
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.30
Consensus pattern (102 bp):
AGTACTGTGTGAAGGCTACTACGTGTACCGATAAATAATGAACACATGTGTAGTACTAAGTGAAG
GCTACTATGTGTACCGGAAAGATTTGGTCACATGTAC
Found at i:26180673 original size:51 final size:51
Alignment explanation
Indices: 26180438--26180661 Score: 254
Period size: 51 Copynumber: 4.4 Consensus size: 51
26180428 ATGAAACACG
** *
26180438 TGTGTAGTACTGTGTGAAGGCTACTATGTGTATCGATAAATAATGGTCACA
1 TGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGATAAATAATGGTCACA
* * **
26180489 TGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAGAAGTTTTGGTCACA
1 TGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGATAAATAATGGTCACA
** ** * * **
26180540 TGTACAGTACTGCGTGAAGGCTACTACGTGTACCGATAAATGATGAACACA
1 TGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGATAAATAATGGTCACA
* *
26180591 TGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGGA-AAGAT-TTGGTCACG
1 TGTGTAGTACTAAGTGAAGGCTACTATGTGTACC-GATAA-ATAATGGTCACA
*
26180642 TGTGTAGTACTATGTGAAGG
1 TGTGTAGTACTAAGTGAAGG
26180662 TTTCTACGTG
Statistics
Matches: 143, Mismatches: 28, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
51 139 0.97
52 4 0.03
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGATAAATAATGGTCACA
Found at i:26180710 original size:102 final size:100
Alignment explanation
Indices: 26180434--26180703 Score: 303
Period size: 102 Copynumber: 2.6 Consensus size: 100
26180424 ATCGATGAAA
* * *
26180434 CACGTGTGTAGTACTGTGTGAAGGCTACTATGTGTATCGATA-AATAATGGTCACATGTGTAGTA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTAACGATATAA-AA--GTAACATGTGTAGTA
*
26180498 CTAAGTGAAGGCTACTATGTGTACCGAGAAGTTTTGGT
63 CTAAGTGAAGGCTACTATGTGTACCGAGAAGATTTGGT
* ** * * * *
26180536 CACATGTACAGTACTGCGTGAAGGCTACTACGTGTACCGATA-AATGATGAACACATGTGTAGTA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTAACGATATAA--AAGTA-ACATGTGTAGTA
26180600 CTAAGTGAAGGCTACTATGTGTACCG-GAAAGATTTGGT
63 CTAAGTGAAGGCTACTATGTGTACCGAG-AAGATTTGGT
* * * *
26180638 CACGTGTGTAGTACTATGTGAAGGTTTCTACGTGTAACGGATGATAAAAGTAACATGGGTAGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTAAC-GAT-ATAAAAGTAACATGTGTAGTAC
26180703 T
64 T
26180704 GTGTGAAAAA
Statistics
Matches: 140, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
101 2 0.01
102 128 0.91
103 7 0.05
104 1 0.01
105 2 0.01
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (100 bp):
CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTAACGATATAAAAGTAACATGTGTAGTACTA
AGTGAAGGCTACTATGTGTACCGAGAAGATTTGGT
Found at i:26182442 original size:13 final size:13
Alignment explanation
Indices: 26182424--26182452 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
26182414 ATGATATGTT
26182424 TATATAAAATTTG
1 TATATAAAATTTG
26182437 TATATAAAATTTG
1 TATATAAAATTTG
26182450 TAT
1 TAT
26182453 TCGTATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (13 bp):
TATATAAAATTTG
Found at i:26184169 original size:25 final size:25
Alignment explanation
Indices: 26184141--26184234 Score: 82
Period size: 25 Copynumber: 3.8 Consensus size: 25
26184131 CTATAAACGG
* *
26184141 TAAGCTCATTCGTGCTGAATAACAA
1 TAAGCTCATACGAGCTGAATAACAA
* * * **
26184166 TAAGCTCCTCCGTGCTGAATAATGA
1 TAAGCTCATACGAGCTGAATAACAA
* * *
26184191 TAAGCTCATGCGAGCTGAGA-ATCAG
1 TAAGCTCATACGAGCTGA-ATAACAA
26184216 TAAGCTCATACGAGCTGAA
1 TAAGCTCATACGAGCTGAA
26184235 ATCGGTAACC
Statistics
Matches: 56, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
24 1 0.02
25 54 0.96
26 1 0.02
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.24
Consensus pattern (25 bp):
TAAGCTCATACGAGCTGAATAACAA
Found at i:26184242 original size:24 final size:25
Alignment explanation
Indices: 26184191--26184242 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
26184181 TGAATAATGA
*
26184191 TAAGCTCATGCGAGCTGAGAATCAG
1 TAAGCTCATACGAGCTGAGAATCAG
*
26184216 TAAGCTCATACGAGCTGA-AATCGG
1 TAAGCTCATACGAGCTGAGAATCAG
26184240 TAA
1 TAA
26184243 CCCTAATGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 8 0.32
25 17 0.68
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (25 bp):
TAAGCTCATACGAGCTGAGAATCAG
Found at i:26188412 original size:17 final size:18
Alignment explanation
Indices: 26188379--26188420 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
26188369 TGGAATAGTT
*
26188379 AATAA-CAATTTATATTC
1 AATAATCAATTCATATTC
26188396 AATAATCAATTCA-ATTC
1 AATAATCAATTCATATTC
*
26188413 CATAATCA
1 AATAATCA
26188421 CAAGTAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 16 0.73
18 6 0.27
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.36
Consensus pattern (18 bp):
AATAATCAATTCATATTC
Found at i:26189634 original size:37 final size:37
Alignment explanation
Indices: 26189583--26189689 Score: 110
Period size: 38 Copynumber: 2.9 Consensus size: 37
26189573 AAGTTTATCT
26189583 GTAG-ATTTTACTCATTTGAGCTCCATTCAGTATAACA
1 GTAGAATTTT-CTCATTTGAGCTCCATTCAGTATAACA
*
26189620 GTAGAATTTTCTCATTTGAGCTTCACA-TCAATATAACA
1 GTAGAATTTTCTCATTTGAGC-TC-CATTCAGTATAACA
* * * * * *
26189658 ATAAAATTTGCTCGTTTGAGCTACTTTCAGTA
1 GTAGAATTTTCTCATTTGAGCTCCATTCAGTA
26189690 GAATCATTAA
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
36 1 0.02
37 21 0.36
38 34 0.59
39 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (37 bp):
GTAGAATTTTCTCATTTGAGCTCCATTCAGTATAACA
Found at i:26189819 original size:40 final size:40
Alignment explanation
Indices: 26189775--26189854 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
26189765 ATTGGAATCG
* * *
26189775 GTAGGTATGGCTCGAAAACGCATACGTTTCACTAGATTCA
1 GTAGGTATAGCTCGAAAACACATACGTTTAACTAGATTCA
** *
26189815 GTAGGTATAGCTCGAAAGTACATACGTTTAAGTAGATTCA
1 GTAGGTATAGCTCGAAAACACATACGTTTAACTAGATTCA
26189855 ATAGATATCA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.29
Consensus pattern (40 bp):
GTAGGTATAGCTCGAAAACACATACGTTTAACTAGATTCA
Found at i:26193930 original size:29 final size:29
Alignment explanation
Indices: 26193897--26194053 Score: 199
Period size: 29 Copynumber: 5.4 Consensus size: 29
26193887 TCATTGACTA
*
26193897 ATGAAAAGGGATAGCTTCAACTATCGAAT
1 ATGAAAAGGGATAGCTTCGACTATCGAAT
* * *
26193926 ATGAAAAGGGATAGCTTCAACTATCCAGT
1 ATGAAAAGGGATAGCTTCGACTATCGAAT
* *
26193955 ATGAAAAGGGATAGCTTCGGCTATCGATT
1 ATGAAAAGGGATAGCTTCGACTATCGAAT
* * *
26193984 ATGAAAAGGGAT-GGTGACGACCATCGAAT
1 ATGAAAAGGGATAGCT-TCGACTATCGAAT
* *
26194013 ATGAAAAGGGATAGCTTCGATTATCGATT
1 ATGAAAAGGGATAGCTTCGACTATCGAAT
26194042 ATGAAAAGGGAT
1 ATGAAAAGGGAT
26194054 GGTGACGACT
Statistics
Matches: 110, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
28 2 0.02
29 106 0.96
30 2 0.02
ACGTcount: A:0.38, C:0.13, G:0.25, T:0.24
Consensus pattern (29 bp):
ATGAAAAGGGATAGCTTCGACTATCGAAT
Found at i:26193960 original size:58 final size:58
Alignment explanation
Indices: 26193897--26194082 Score: 214
Period size: 58 Copynumber: 3.2 Consensus size: 58
26193887 TCATTGACTA
* * * * *
26193897 ATGAAAAGGGATAGCTTCAACTATCGAATATGAAAAGGGATAGCT-TCAACTATCCAGT
1 ATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGAT-GCTGACAACCATCCAAT
* * * *
26193955 ATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGATGGTGACGACCATCGAAT
1 ATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGCTGACAACCATCCAAT
* * * *
26194013 ATGAAAAGGGATAGCTTCGATTATCGATTATGAAAAGGGATGGTGACGACTAT-CAACT
1 ATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGCTGACAACCATCCAA-T
*
26194071 ATGAAAAAGGAT
1 ATGAAAAGGGAT
26194083 GGTGATGACC
Statistics
Matches: 112, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
57 4 0.04
58 108 0.96
ACGTcount: A:0.38, C:0.13, G:0.25, T:0.24
Consensus pattern (58 bp):
ATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGCTGACAACCATCCAAT
Found at i:26194010 original size:87 final size:87
Alignment explanation
Indices: 26193919--26194095 Score: 239
Period size: 87 Copynumber: 2.0 Consensus size: 87
26193909 AGCTTCAACT
* * * *
26193919 ATCGAATATGAAAAGGGATAGCTTCAACTATCCAGTATGAAAAGGGATAGCT-TCGGCTATCGAT
1 ATCGAATATGAAAAGGGATAGCTTCAACTATCCAGTATGAAAAGGGAT-GCTGACGACTATCAAC
*
26193983 TATGAAAAGGGATGGTGACGACC
65 TATGAAAAAGGATGGTGACGACC
* * * * *
26194006 ATCGAATATGAAAAGGGATAGCTTCGATTATCGATTATGAAAAGGGATGGTGACGACTATCAACT
1 ATCGAATATGAAAAGGGATAGCTTCAACTATCCAGTATGAAAAGGGATGCTGACGACTATCAACT
*
26194071 ATGAAAAAGGATGGTGATGACC
66 ATGAAAAAGGATGGTGACGACC
26194093 ATC
1 ATC
26194096 AGCTAAGAAC
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
86 2 0.03
87 76 0.97
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.24
Consensus pattern (87 bp):
ATCGAATATGAAAAGGGATAGCTTCAACTATCCAGTATGAAAAGGGATGCTGACGACTATCAACT
ATGAAAAAGGATGGTGACGACC
Found at i:26194066 original size:29 final size:29
Alignment explanation
Indices: 26193916--26194172 Score: 166
Period size: 29 Copynumber: 8.9 Consensus size: 29
26193906 GATAGCTTCA
* * *
26193916 ACTATCGAATATGAAAAGGGATAGCT-TCA
1 ACTATCGAATATGAAAAGGGAT-GGTGACG
* * * *
26193945 ACTATCCAGTATGAAAAGGGATAGCT-TCG
1 ACTATCGAATATGAAAAGGGAT-GGTGACG
* *
26193974 GCTATCGATTATGAAAAGGGATGGTGACG
1 ACTATCGAATATGAAAAGGGATGGTGACG
* * *
26194003 ACCATCGAATATGAAAAGGGATAGCT-TCG
1 ACTATCGAATATGAAAAGGGAT-GGTGACG
* *
26194032 ATTATCGATTATGAAAAGGGATGGTGACG
1 ACTATCGAATATGAAAAGGGATGGTGACG
* *
26194061 ACTATC-AACTATGAAAAAGGATGGTGATG
1 ACTATCGAA-TATGAAAAGGGATGGTGACG
* * * * *
26194090 ACCATC-AGCTAAGAACAGGAATGGTGACG
1 ACTATCGA-ATATGAAAAGGGATGGTGACG
* * * **
26194119 ACCATCGATTAATGAAAAGGGAAGGTTTCG
1 ACTATCGAAT-ATGAAAAGGGATGGTGACG
* *
26194149 ACCATCAAATATG-AAAGGGATGGT
1 ACTATCGAATATGAAAAGGGATGGT
26194173 TACAACCATC
Statistics
Matches: 182, Mismatches: 39, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
28 15 0.08
29 143 0.79
30 24 0.13
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (29 bp):
ACTATCGAATATGAAAAGGGATGGTGACG
Found at i:26194172 original size:58 final size:58
Alignment explanation
Indices: 26193983--26194182 Score: 183
Period size: 58 Copynumber: 3.4 Consensus size: 58
26193973 GGCTATCGAT
* ** * *
26193983 TATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATA-GCTTCGATTATCGAT
1 TATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGA-AGGTTTCGACCATCAAA
* * * * **
26194041 TATGAAAAGGGATGGTGACGACTATC-AACTATGAAAAAGGATGGTGAT-GACCATCAGC
1 TATGAAAAGGGATGGTGACGACCATCGAA-TATGAAAAGGGAAGGT-TTCGACCATCAAA
* * * *
26194099 TAAGAACAGGAATGGTGACGACCATCGATTAATGAAAAGGGAAGGTTTCGACCATCAAA
1 TATGAAAAGGGATGGTGACGACCATCGAAT-ATGAAAAGGGAAGGTTTCGACCATCAAA
* *
26194158 TATG-AAAGGGATGGTTACAACCATC
1 TATGAAAAGGGATGGTGACGACCATC
26194183 ATTTAACACA
Statistics
Matches: 111, Mismatches: 25, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
57 2 0.02
58 83 0.75
59 26 0.23
ACGTcount: A:0.38, C:0.14, G:0.27, T:0.21
Consensus pattern (58 bp):
TATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGAAGGTTTCGACCATCAAA
Found at i:26196972 original size:55 final size:50
Alignment explanation
Indices: 26196746--26196994 Score: 191
Period size: 50 Copynumber: 4.9 Consensus size: 50
26196736 TGATAATAAC
* ** * * *
26196746 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTGT-A
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCA
* * ** ** * ** * * *
26196795 CTGACAATTTCATAACCCAGATATGGTCTTACATGGGAGTTCTTATATCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCA
* * * * *
26196845 GTGCCCATGCCATGTCCCAAACATGGTCTTAC-GGGGAACCTCTCATCTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGG-ACCTCTCATCTCA
* *
26196895 GTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAAA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT---CTC--A
26196950 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA--TCTCATC
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATC
26196995 CCTTTAATTT
Statistics
Matches: 156, Mismatches: 36, Indels: 15
0.75 0.17 0.07
Matches are distributed among these distances:
49 37 0.24
50 71 0.46
51 3 0.02
53 9 0.06
55 36 0.23
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (50 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCA
Found at i:26204089 original size:50 final size:50
Alignment explanation
Indices: 26204025--26204157 Score: 162
Period size: 50 Copynumber: 2.7 Consensus size: 50
26204015 CAATGTCATA
* * *
26204025 TCCCAGATATGGTCTTCCATGGGA-GTCCTCATACCGGTGTCC-ATGCCATG
1 TCCCAGATATGGTCTTACATGGGACCT-CTCATACCGGTG-CCAACGCCATG
* * *
26204075 TCCTAGATATGGTCTTACAGGGGACCTCTCATATCGGTGCCAACGCCATG
1 TCCCAGATATGGTCTTACATGGGACCTCTCATACCGGTGCCAACGCCATG
* *
26204125 TCCCAGACATGGTCTTACATGAGACCTCTCATA
1 TCCCAGATATGGTCTTACATGGGACCTCTCATA
26204158 ACCTCAATAA
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
49 2 0.03
50 68 0.96
51 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (50 bp):
TCCCAGATATGGTCTTACATGGGACCTCTCATACCGGTGCCAACGCCATG
Found at i:26209824 original size:29 final size:29
Alignment explanation
Indices: 26209791--26210180 Score: 187
Period size: 29 Copynumber: 13.4 Consensus size: 29
26209781 TTATTGACTA
* *
26209791 ATGAAAAGGGATAACTTCGATTATCGAAT
1 ATGAAAAGGGATAGCTTCGACTATCGAAT
* ** *
26209820 ATG-AAAGCGGATTGCTTCGGTTATCAAAT
1 ATGAAAAG-GGATAGCTTCGACTATCGAAT
* * * *
26209849 ATGAAAAGTGATAGCGTCGGCTATCGATT
1 ATGAAAAGGGATAGCTTCGACTATCGAAT
* * * * *
26209878 AAGAAAAGAGAT-GGTGACGACCATC-AACT
1 ATGAAAAGGGATAGCT-TCGACTATCGAA-T
*
26209907 ATGAAAAGGGATA--TTGACGACCATCGAAT
1 ATGAAAAGGGATAGCTT--CGACTATCGAAT
* *
26209936 ATGAACAGGGATAGCTTCGGCTATCGAAT
1 ATGAAAAGGGATAGCTTCGACTATCGAAT
*
26209965 ATGAAAAGGGATAGCTTC-AGCTATCGATT
1 ATGAAAAGGGATAGCTTCGA-CTATCGAAT
* * * * * *
26209994 CTAAAAAGGGAT-GGTGACGACCATCAAAT
1 ATGAAAAGGGATAGCT-TCGACTATCGAAT
* * *
26210023 ATGAAAAGAGAT-GGTGAT-GACCATCGAAT
1 ATGAAAAGGGATAGCT--TCGACTATCGAAT
*
26210052 ATGAAAAGGGATAGCTTC-AGCTATCGATT
1 ATGAAAAGGGATAGCTTCGA-CTATCGAAT
* * * *
26210081 ATAAAAAGGGAT-GGTGACGACCATC-AACT
1 ATGAAAAGGGATAGCT-TCGACTATCGAA-T
* * * *
26210110 ATGAAAAGGGAT-GGTGACGACCATCGATT
1 ATGAAAAGGGATAGCT-TCGACTATCGAAT
* *
26210139 AATGAAAAGGGAT-GGTTCCGACCATCGAAT
1 -ATGAAAAGGGATAGCTT-CGACTATCGAAT
*
26210169 ATGAAACGGGAT
1 ATGAAAAGGGAT
26210181 GGTTACAACC
Statistics
Matches: 284, Mismatches: 54, Indels: 46
0.74 0.14 0.12
Matches are distributed among these distances:
28 14 0.05
29 231 0.81
30 37 0.13
31 2 0.01
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (29 bp):
ATGAAAAGGGATAGCTTCGACTATCGAAT
Found at i:26210001 original size:87 final size:85
Alignment explanation
Indices: 26209910--26210151 Score: 306
Period size: 87 Copynumber: 2.8 Consensus size: 85
26209900 ATCAACTATG
** * * *
26209910 AAAAGGGATATTGACGACCATCGAATATGAACAGGGATAGCT-TCGGCTATCGAATATGAAAAGG
1 AAAAGGGATGGTGACGACCATC-AATATGAAAAGGGAT-GCTAT-GACCATCGAATATGAAAAGG
*
26209974 GATAGCTTCAGCTATCGATTCTA
63 GATAGCTTCAGCTATCGATTATA
* *
26209997 AAAAGGGATGGTGACGACCATCAAATATGAAAAGAGATGGTGATGACCATCGAATATGAAAAGGG
1 AAAAGGGATGGTGACGACCATC-AATATGAAAAGGGATGCT-ATGACCATCGAATATGAAAAGGG
26210062 ATAGCTTCAGCTATCGATTATA
64 ATAGCTTCAGCTATCGATTATA
* * *
26210084 AAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGACGACCATCGATTAATGAAAAGG
1 AAAAGGGATGGTGACGACCATCAA-TATGAAAAGGGATGCT-ATGACCATCGAAT-ATGAAAAGG
26210149 GAT
63 GAT
26210152 GGTTCCGACC
Statistics
Matches: 139, Mismatches: 12, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
86 4 0.03
87 122 0.88
88 13 0.09
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.21
Consensus pattern (85 bp):
AAAAGGGATGGTGACGACCATCAATATGAAAAGGGATGCTATGACCATCGAATATGAAAAGGGAT
AGCTTCAGCTATCGATTATA
Found at i:26210001 original size:116 final size:115
Alignment explanation
Indices: 26209813--26210180 Score: 391
Period size: 116 Copynumber: 3.2 Consensus size: 115
26209803 AACTTCGATT
* * * * *
26209813 ATCGAATATGAAAGCGGATTGCTTCGGTTATCAAATATGAAAAGTGATAGCGTCGGCTATCGATT
1 ATCGAATATGAAAG-GGATAGCTTCGGCTATCGAATATGAAAAGGGATAGCGTCAGCTATCGATT
* * *
26209878 AAGAAAAGAGATGGTGACGACCATCAACTATGAAAAGGGATATTGACGACC
65 AAGAAAAGAGATGGTGACGACCATCAAATATGAAAAGAGATAGTGACGACC
*
26209929 ATCGAATATGAACAGGGATAGCTTCGGCTATCGAATATGAAAAGGGATAGCTTCAGCTATCGATT
1 ATCGAATATGAA-AGGGATAGCTTCGGCTATCGAATATGAAAAGGGATAGCGTCAGCTATCGATT
* * * *
26209994 CTA-AAAAGGGATGGTGACGACCATCAAATATGAAAAGAGATGGTGATGACC
65 -AAGAAAAGAGATGGTGACGACCATCAAATATGAAAAGAGATAGTGACGACC
* * * * * *
26210045 ATCGAATATGAAAAGGGATAGCTTCAGCTATCGATTATAAAAAGGGAT-G-GTGACGACCATCAA
1 ATCGAATATG-AAAGGGATAGCTTCGGCTATCGAATATGAAAAGGGATAGCGTCA-G-CTATCGA
* * * * * * * **
26210108 CTATGAAAAGGGATGGTGACGACCATCGATTAATGAAAAGGGATGGTTCCGACC
63 TTAAGAAAAGAGATGGTGACGACCATCAAAT-ATGAAAAGAGATAGTGACGACC
26210162 ATCGAATATGAAACGGGAT
1 ATCGAATATGAAA-GGGAT
26210181 GGTTACAACC
Statistics
Matches: 215, Mismatches: 29, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
114 2 0.01
115 2 0.01
116 173 0.80
117 38 0.18
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22
Consensus pattern (115 bp):
ATCGAATATGAAAGGGATAGCTTCGGCTATCGAATATGAAAAGGGATAGCGTCAGCTATCGATTA
AGAAAAGAGATGGTGACGACCATCAAATATGAAAAGAGATAGTGACGACC
Found at i:26210182 original size:29 final size:29
Alignment explanation
Indices: 26209871--26210193 Score: 248
Period size: 29 Copynumber: 11.1 Consensus size: 29
26209861 AGCGTCGGCT
* * * *
26209871 ATCGATTAAGAAAAGAGATGGTGACGACC
1 ATCGAATATGAAAAGGGATGGTTACGACC
*
26209900 ATC-AACTATGAAAAGGGAT-ATTGACGACC
1 ATCGAA-TATGAAAAGGGATGGTT-ACGACC
* * * *
26209929 ATCGAATATGAACAGGGATAGCTT-CGGCT
1 ATCGAATATGAAAAGGGAT-GGTTACGACC
* *
26209958 ATCGAATATGAAAAGGGATAGCTT-C-AGCT
1 ATCGAATATGAAAAGGGAT-GGTTACGA-CC
* * * *
26209987 ATCGATTCTAAAAAGGGATGGTGACGACC
1 ATCGAATATGAAAAGGGATGGTTACGACC
* * * *
26210016 ATCAAATATGAAAAGAGATGGTGATGACC
1 ATCGAATATGAAAAGGGATGGTTACGACC
* *
26210045 ATCGAATATGAAAAGGGATAGCTT-C-AGCT
1 ATCGAATATGAAAAGGGAT-GGTTACGA-CC
* * *
26210074 ATCGATTATAAAAAGGGATGGTGACGACC
1 ATCGAATATGAAAAGGGATGGTTACGACC
*
26210103 ATC-AACTATGAAAAGGGATGGTGACGACC
1 ATCGAA-TATGAAAAGGGATGGTTACGACC
* *
26210132 ATCGATTAATGAAAAGGGATGGTTCCGACC
1 ATCGAAT-ATGAAAAGGGATGGTTACGACC
* *
26210162 ATCGAATATGAAACGGGATGGTTACAACC
1 ATCGAATATGAAAAGGGATGGTTACGACC
26210191 ATC
1 ATC
26210194 ATTTAGCACA
Statistics
Matches: 236, Mismatches: 43, Indels: 30
0.76 0.14 0.10
Matches are distributed among these distances:
28 8 0.03
29 193 0.82
30 33 0.14
31 2 0.01
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.21
Consensus pattern (29 bp):
ATCGAATATGAAAAGGGATGGTTACGACC
Found at i:26213591 original size:46 final size:46
Alignment explanation
Indices: 26213524--26213616 Score: 168
Period size: 46 Copynumber: 2.0 Consensus size: 46
26213514 TATTTTTAAA
*
26213524 TTTCATACCTATCCTATGCCTTAGAACGTTACAAGCTGAAAAGTCC
1 TTTCATACCTATCCTAAGCCTTAGAACGTTACAAGCTGAAAAGTCC
*
26213570 TTTCATACCTATCCTAAGCCTTAGAACGTTGCAAGCTGAAAAGTCC
1 TTTCATACCTATCCTAAGCCTTAGAACGTTACAAGCTGAAAAGTCC
26213616 T
1 T
26213617 ATGTGACCTA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (46 bp):
TTTCATACCTATCCTAAGCCTTAGAACGTTACAAGCTGAAAAGTCC
Found at i:26217620 original size:37 final size:37
Alignment explanation
Indices: 26217570--26217648 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
26217560 TTATTACGAA
* *
26217570 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
26217607 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
26217644 GTCTT
1 GTCTT
26217649 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Done.