Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 87 of 221
Found at i:26217845 original size:47 final size:47
Alignment explanation
Indices: 26217767--26218257 Score: 811
Period size: 47 Copynumber: 10.4 Consensus size: 47
26217757 CCCTTCGGGA
* * * * * * *
26217767 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26217814 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26217861 CTTACCACATATATACACTTTCACATTCATCAGATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26217908 CTTATTACATATATACACTTTCACATTCATCACATCAGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26217955 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26218002 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26218051 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26218098 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26218145 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26218192 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26218239 CTTATCACATATATACACT
1 CTTATCACATATATACACT
26218258 GTCTTGGCTG
Statistics
Matches: 418, Mismatches: 24, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 372 0.89
49 46 0.11
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26218197 original size:237 final size:237
Alignment explanation
Indices: 26217767--26218253 Score: 834
Period size: 237 Copynumber: 2.1 Consensus size: 237
26217757 CCCTTCGGGA
* * * * *
26217767 CTTATCACAT-T-TATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
*
26217830 ACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATACACTTTCACATTCATCAGA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATACACTTTCACATTCATCACA
* * *
26217895 TCGGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCAGCTATTAGGCCTTAT
131 TCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTAT
26217960 CACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
196 CACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
26218002 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
*
26218067 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATACACTTTCACATTCATCACA
*
26218132 TCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
131 TCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTAT
26218197 CACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
196 CACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
26218239 CTTATCACATATATA
1 CTTATCACATATATA
26218254 CACTGTCTTG
Statistics
Matches: 236, Mismatches: 14, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
235 10 0.04
236 1 0.00
237 225 0.95
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (237 bp):
CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTAT
CACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:26225378 original size:30 final size:30
Alignment explanation
Indices: 26225344--26225409 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 30
26225334 AATAGGCATA
26225344 AGTGACCTAATTTG-TCAATAATAAAAGTTT
1 AGTGACCTAATTTGATCAA-AATAAAAGTTT
** * *
26225374 AGTGATTTAATTTGATGAAATTAAAAGTTT
1 AGTGACCTAATTTGATCAAAATAAAAGTTT
26225404 A-TGACC
1 AGTGACC
26225410 CATATGATAG
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
29 3 0.10
30 23 0.79
31 3 0.10
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.38
Consensus pattern (30 bp):
AGTGACCTAATTTGATCAAAATAAAAGTTT
Found at i:26225868 original size:19 final size:19
Alignment explanation
Indices: 26225824--26225872 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
26225814 ATTAATTAAA
* *
26225824 ATTTAAAAAATTTAAAAGT
1 ATTTAAAAATTTTAAAAAT
*
26225843 -TGATAAAAATTTTAAAAAT
1 AT-TTAAAAATTTTAAAAAT
26225862 ATTTAAAAATT
1 ATTTAAAAATT
26225873 AAAAATGTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
18 1 0.04
19 22 0.92
20 1 0.04
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (19 bp):
ATTTAAAAATTTTAAAAAT
Found at i:26225891 original size:22 final size:23
Alignment explanation
Indices: 26225859--26225901 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
26225849 AAATTTTAAA
* *
26225859 AATATTTAAAAATTA-AAAATGT
1 AATATTAAAAAAATATAAAATGT
26225881 AATATTAAAAAAATATAAAAT
1 AATATTAAAAAAATATAAAAT
26225902 ATATATTTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (23 bp):
AATATTAAAAAAATATAAAATGT
Found at i:26225907 original size:22 final size:22
Alignment explanation
Indices: 26225859--26225908 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
26225849 AAATTTTAAA
* * *
26225859 AATATTTAAAAATTAAAAATGT
1 AATATTAAAAAAATAAAAATAT
26225881 AATATTAAAAAAATATAAAATAT
1 AATATTAAAAAAATA-AAAATAT
26225904 -ATATT
1 AATATT
26225909 TCATTTTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 18 0.75
23 6 0.25
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (22 bp):
AATATTAAAAAAATAAAAATAT
Found at i:26234113 original size:16 final size:16
Alignment explanation
Indices: 26234092--26234124 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
26234082 ATATAAATAT
*
26234092 AATAATATTAATAAAA
1 AATAATATCAATAAAA
26234108 AATAATATCAATAAAA
1 AATAATATCAATAAAA
26234124 A
1 A
26234125 TATTAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (16 bp):
AATAATATCAATAAAA
Found at i:26234130 original size:28 final size:30
Alignment explanation
Indices: 26234073--26234130 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
26234063 TATTCTAAAT
*
26234073 TAAAAACTAATATAAATATAATAATATTAA
1 TAAAAAATAATATAAATATAATAATATTAA
*
26234103 TAAAAAATAATATCAATA-AA-AATATTAA
1 TAAAAAATAATATAAATATAATAATATTAA
26234131 AATTTAATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 8 0.31
29 2 0.08
30 16 0.62
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (30 bp):
TAAAAAATAATATAAATATAATAATATTAA
Found at i:26234131 original size:25 final size:25
Alignment explanation
Indices: 26234071--26234149 Score: 63
Period size: 30 Copynumber: 3.0 Consensus size: 25
26234061 TCTATTCTAA
* *
26234071 ATTAAAAACTAATATAAATATAATAAT
1 ATTAAAAAATAATATCAATA-AA-AAT
26234098 ATTAATAAAAAATAATATCAATAAAAAT
1 A-T--TAAAAAATAATATCAATAAAAAT
* *
26234126 ATT-AAAATTTA-ATCAATAAAAAT
1 ATTAAAAAATAATATCAATAAAAAT
26234149 A
1 A
26234150 AAATTAAAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
23 13 0.29
24 6 0.13
25 1 0.02
27 2 0.04
28 5 0.11
29 2 0.04
30 16 0.36
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.32
Consensus pattern (25 bp):
ATTAAAAAATAATATCAATAAAAAT
Found at i:26234701 original size:9 final size:9
Alignment explanation
Indices: 26234687--26234753 Score: 84
Period size: 9 Copynumber: 7.4 Consensus size: 9
26234677 TTTGGTTAAA
26234687 AATTAACCG
1 AATTAACCG
26234696 AATTAACCG
1 AATTAACCG
26234705 AATT-ACTCG
1 AATTAAC-CG
26234714 AATTAACCG
1 AATTAACCG
26234723 AATT-ACTCG
1 AATTAAC-CG
* *
26234732 AATTACCCA
1 AATTAACCG
26234741 AATTAACCG
1 AATTAACCG
26234750 AATT
1 AATT
26234754 GAATCACTAC
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
8 4 0.08
9 43 0.86
10 3 0.06
ACGTcount: A:0.42, C:0.22, G:0.09, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:26234725 original size:27 final size:27
Alignment explanation
Indices: 26234686--26234753 Score: 102
Period size: 27 Copynumber: 2.5 Consensus size: 27
26234676 TTTTGGTTAA
*
26234686 AAATTAACCGAATTAAC-CGAATTACTC
1 AAATTAACCGAATT-ACTCGAATTACCC
*
26234713 GAATTAACCGAATTACTCGAATTACCC
1 AAATTAACCGAATTACTCGAATTACCC
26234740 AAATTAACCGAATT
1 AAATTAACCGAATT
26234754 GAATCACTAC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 2 0.05
27 35 0.95
ACGTcount: A:0.43, C:0.22, G:0.09, T:0.26
Consensus pattern (27 bp):
AAATTAACCGAATTACTCGAATTACCC
Found at i:26234783 original size:17 final size:17
Alignment explanation
Indices: 26234761--26234821 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
26234751 ATTGAATCAC
26234761 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
26234778 TACATAAGTCTTTGAATCAC
1 TACATAA---TTAAAAACAT
26234798 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
26234815 TACATAA
1 TACATAA
26234822 GTCTTGAAAT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 20 0.61
20 13 0.39
ACGTcount: A:0.51, C:0.15, G:0.03, T:0.31
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:26234793 original size:37 final size:37
Alignment explanation
Indices: 26234752--26234826 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
26234742 ATTAACCGAA
26234752 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
26234789 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
26234826 T
1 T
26234827 GAAATTAACA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.45, C:0.16, G:0.05, T:0.33
Consensus pattern (37 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGTCT
Found at i:26234840 original size:37 final size:37
Alignment explanation
Indices: 26234752--26234843 Score: 134
Period size: 37 Copynumber: 2.5 Consensus size: 37
26234742 ATTAACCGAA
*
26234752 TTGAATCACTACATAATTAAAAACATTACATAAGTCT
1 TTGAATAACTACATAATTAAAAACATTACATAAGTCT
*
26234789 TTGAATCACTACATAATTAAAAACATTACATAAGTC-
1 TTGAATAACTACATAATTAAAAACATTACATAAGTCT
26234825 TTGAAATTAAC-ACATAATT
1 TTG-AA-TAACTACATAATT
26234844 GAAATGTAAG
Statistics
Matches: 52, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
36 3 0.06
37 46 0.88
38 3 0.06
ACGTcount: A:0.47, C:0.15, G:0.05, T:0.33
Consensus pattern (37 bp):
TTGAATAACTACATAATTAAAAACATTACATAAGTCT
Found at i:26235015 original size:8 final size:8
Alignment explanation
Indices: 26235002--26235031 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
26234992 TTGGGTTGGG
26235002 TTGGGTAA
1 TTGGGTAA
26235010 TTGGGTAA
1 TTGGGTAA
26235018 TTGGGTAA
1 TTGGGTAA
26235026 TTGGGT
1 TTGGGT
26235032 TGGGTTAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (8 bp):
TTGGGTAA
Found at i:26243173 original size:25 final size:26
Alignment explanation
Indices: 26243144--26243194 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
26243134 TTTCTCATCC
*
26243144 CAATTTTACTCCAA-TAAAATTTTGA
1 CAATTTTACCCCAAGTAAAATTTTGA
26243169 CAATTTTACCCCAAGTAAAATTTTGA
1 CAATTTTACCCCAAGTAAAATTTTGA
26243195 GAAAATTTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.39, C:0.18, G:0.06, T:0.37
Consensus pattern (26 bp):
CAATTTTACCCCAAGTAAAATTTTGA
Found at i:26246313 original size:37 final size:37
Alignment explanation
Indices: 26246263--26246342 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
26246253 CTTATTACGA
* *
26246263 AGTCTTACCCGGACATAA-TCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATTC-CCACACGAAGTCATCG
*
26246300 AGTCTTACCCGGACAAAATTCCCACACGTAGTCATCG
1 AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
*
26246337 GGTCTT
1 AGTCTT
26246343 TAGAGCCCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
Found at i:26246536 original size:47 final size:47
Alignment explanation
Indices: 26246473--26247387 Score: 1541
Period size: 47 Copynumber: 19.6 Consensus size: 47
26246463 TATCACATTT
* * * * * *
26246473 ATACAC-T-TTCACATTCATTACATCGGCCATTAGGCCTTACCTCAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
26246518 ATACACATGCTCACATTCATCACATTGGCCACTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
*
26246565 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
26246612 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCCTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
26246659 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
26246706 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCCTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
26246753 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
26246800 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCCTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
26246847 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
*
26246894 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
26246941 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCCTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
*
26246988 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCCTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
*
26247035 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
26247082 ATACACATGTTCACATTCATCACATTGGCCATTC-GCCCTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
26247128 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
26247175 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCCTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
26247222 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
*
26247269 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCC-TATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
*
26247315 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCCTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
26247362 ATATACATGTTCACATTCATCACATT
1 ATACACATGTTCACTTTCATCACATT
26247388 TATTCAATTA
Statistics
Matches: 822, Mismatches: 44, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
45 6 0.01
46 90 0.11
47 726 0.88
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.31
Consensus pattern (47 bp):
ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
Found at i:26250957 original size:40 final size:40
Alignment explanation
Indices: 26250900--26251552 Score: 1003
Period size: 40 Copynumber: 16.6 Consensus size: 40
26250890 CCAGCATGAT
* *
26250900 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
26250940 TGCTCTTCGGAACTTAGCCCGGATTTATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
26250980 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
26251020 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
26251060 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
26251100 TGCTCTTCGGGACTTAGCCCGGATTTATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
26251140 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
26251180 TGCTCTTCGGGACTTAGCCCGG--ATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
26251218 TGCTCTTCGGGACTTAGCCCGG--ATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
26251256 TGCTCTTC-GGACTTAGCCCGG--ATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
26251293 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
26251332 TGCTCTTCGGGACTTAGCCCGGAT-TATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
26251371 TGCTCTTCGGGACTTAGCCCGGATA-ATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
26251410 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
26251450 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCA-CACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACT-AGCACGAA
* *
26251491 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
26251531 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
26251553 CATCATTCGA
Statistics
Matches: 573, Mismatches: 28, Indels: 24
0.92 0.04 0.04
Matches are distributed among these distances:
37 50 0.09
38 61 0.11
39 103 0.18
40 339 0.59
41 19 0.03
42 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:26253409 original size:37 final size:37
Alignment explanation
Indices: 26253359--26253438 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
26253349 CTTATTACGA
* *
26253359 AGTCTTACCCGGACATAA-TCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATTC-CCACACGAAGTCATCG
*
26253396 AGTCTTACCCGGACAAAATTCCCACACGTAGTCATCG
1 AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
*
26253433 GGTCTT
1 AGTCTT
26253439 TAGAGCCCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
Found at i:26253632 original size:47 final size:47
Alignment explanation
Indices: 26253569--26254485 Score: 1550
Period size: 47 Copynumber: 19.6 Consensus size: 47
26253559 TATCACATTT
* * * * * *
26253569 ATACAC-T-TTCACATTCATTACATCGGCCATTAGGCCTTACCTCAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* * *
26253614 ATACACATGCTCACATTCATCACATTGGCCACTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
*
26253661 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
26253708 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCCTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
26253755 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
26253802 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCCTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
26253849 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
26253896 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCCTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
26253943 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
*
26253990 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
26254037 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCCTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
*
26254084 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCCTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
*
26254131 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
26254178 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCCTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
26254225 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
26254272 ATACACATGTTCACATTCATCACATTGGCCATTCGGCCCTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
26254319 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
26254366 ATATACATGTTCACTTTCATCACATTGGCCATTCGGCCCTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
*
26254413 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCCTATCACAC
1 ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
* *
26254460 ATATACATGTTCACATTCATCACATT
1 ATACACATGTTCACTTTCATCACATT
26254486 TATTCAATTA
Statistics
Matches: 825, Mismatches: 45, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
45 6 0.01
46 1 0.00
47 818 0.99
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.31
Consensus pattern (47 bp):
ATACACATGTTCACTTTCATCACATTGGCCATTCGGCCTTATCACAC
Found at i:26258137 original size:36 final size:36
Alignment explanation
Indices: 26258090--26258159 Score: 113
Period size: 36 Copynumber: 1.9 Consensus size: 36
26258080 AACTCTATTC
*
26258090 AGTTCAATAGCCTTTTGGATCTATTCTAACTGATTT
1 AGTTCAATAGCCTTTCGGATCTATTCTAACTGATTT
* *
26258126 AGTTCAGTAGCCTTTCGGATCTATTCTGACTGAT
1 AGTTCAATAGCCTTTCGGATCTATTCTAACTGAT
26258160 GTGCTCCGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.41
Consensus pattern (36 bp):
AGTTCAATAGCCTTTCGGATCTATTCTAACTGATTT
Found at i:26262233 original size:13 final size:13
Alignment explanation
Indices: 26262215--26262243 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
26262205 ACATAAAAAT
26262215 AAAATTAAAATGA
1 AAAATTAAAATGA
26262228 AAAATTAAAATGA
1 AAAATTAAAATGA
26262241 AAA
1 AAA
26262244 TAAAAATTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.21
Consensus pattern (13 bp):
AAAATTAAAATGA
Found at i:26262236 original size:19 final size:18
Alignment explanation
Indices: 26262207--26262261 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 18
26262197 CTTATTGAAC
26262207 ATAAAAA-TAAAATTAAA
1 ATAAAAATTAAAATTAAA
*
26262224 ATGAAAAATTAAAATGAAA
1 AT-AAAAATTAAAATTAAA
26262243 ATAAAAATTTCAAAATTAA
1 ATAAAAA-TT-AAAATTAA
26262262 TTAGAAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 2 0.06
18 10 0.31
19 13 0.41
20 7 0.22
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.25
Consensus pattern (18 bp):
ATAAAAATTAAAATTAAA
Found at i:26264508 original size:118 final size:118
Alignment explanation
Indices: 26264295--26264537 Score: 459
Period size: 118 Copynumber: 2.1 Consensus size: 118
26264285 CTCCAATGTT
* * *
26264295 GTTGCTTGGCCTTGAATCAAGGCATCATTTTTAACAGTTTATTTCTTTAATAAGTTCTCCAAATC
1 GTTGATTGGCCTTGAATCAAGGCATCATTTTTAACAGTTTAATTCTTTAACAAGTTCTCCAAATC
26264360 ATTTGAAGGCTCAACTTGCGATGGGTTTTGAACTTGTTGATTGAAACCAAGAG
66 ATTTGAAGGCTCAACTTGCGATGGGTTTTGAACTTGTTGATTGAAACCAAGAG
26264413 GTTGATTGGCCTTGAATCAAGGCATCATTTTTAACAGTTTAATTCTTTAACAAGTTCTCCAAATC
1 GTTGATTGGCCTTGAATCAAGGCATCATTTTTAACAGTTTAATTCTTTAACAAGTTCTCCAAATC
26264478 ATTTGAAGGCTCAACTTGCGATGGGTTTTGAACTTGTTGATTGAAACCAAGAG
66 ATTTGAAGGCTCAACTTGCGATGGGTTTTGAACTTGTTGATTGAAACCAAGAG
26264531 GTTGATT
1 GTTGATT
26264538 TGATTTGCGC
Statistics
Matches: 122, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
118 122 1.00
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.37
Consensus pattern (118 bp):
GTTGATTGGCCTTGAATCAAGGCATCATTTTTAACAGTTTAATTCTTTAACAAGTTCTCCAAATC
ATTTGAAGGCTCAACTTGCGATGGGTTTTGAACTTGTTGATTGAAACCAAGAG
Found at i:26278893 original size:26 final size:26
Alignment explanation
Indices: 26278864--26278955 Score: 107
Period size: 26 Copynumber: 3.6 Consensus size: 26
26278854 CTTCAGCCGG
*
26278864 TGTTTATTTAGTAGGCCTTAAG-CTGA
1 TGTTTATTTAGCAGGCCTTAAGTC-GA
*
26278890 TGTTTATATAGCAGGCCTTAAGTCGA
1 TGTTTATTTAGCAGGCCTTAAGTCGA
* * * *
26278916 TGTTTATTTAGCAGGACTTGACTCGG
1 TGTTTATTTAGCAGGCCTTAAGTCGA
26278942 T-TTTATTTAGCAGG
1 TGTTTATTTAGCAGG
26278956 ATTTGAGCCG
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
25 13 0.22
26 44 0.76
27 1 0.02
ACGTcount: A:0.23, C:0.13, G:0.24, T:0.40
Consensus pattern (26 bp):
TGTTTATTTAGCAGGCCTTAAGTCGA
Found at i:26284565 original size:26 final size:26
Alignment explanation
Indices: 26284536--26284587 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
26284526 TCATAAATGA
26284536 GTAAGACCATAGCTGAAAGATGTTAT
1 GTAAGACCATAGCTGAAAGATGTTAT
*
26284562 GTAAGACCATAGTTGAAAGATGTTAT
1 GTAAGACCATAGCTGAAAGATGTTAT
26284588 AGCATCATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.29
Consensus pattern (26 bp):
GTAAGACCATAGCTGAAAGATGTTAT
Found at i:26287557 original size:24 final size:25
Alignment explanation
Indices: 26287530--26287583 Score: 60
Period size: 23 Copynumber: 2.2 Consensus size: 25
26287520 ATGAGTGATA
*
26287530 AAAAAAGAGA-GAGTGATTCAAAA-G
1 AAAAAAGAAACGAGTGA-TCAAAATG
*
26287554 -AAAAAGAAACGAGTGATGAAAATG
1 AAAAAAGAAACGAGTGATCAAAATG
26287578 AAAAAA
1 AAAAAA
26287584 AGAATTTGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 13 0.52
24 7 0.28
25 5 0.20
ACGTcount: A:0.63, C:0.04, G:0.22, T:0.11
Consensus pattern (25 bp):
AAAAAAGAAACGAGTGATCAAAATG
Found at i:26295142 original size:47 final size:47
Alignment explanation
Indices: 26295084--26295527 Score: 717
Period size: 47 Copynumber: 9.4 Consensus size: 47
26295074 CAGCCAAGAC
*
26295084 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
26295131 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
26295178 AGTTTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
26295225 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
26295272 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
26295319 AGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
26295368 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAAGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
26295415 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
26295462 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
26295509 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
26295528 TCCCGAAGGG
Statistics
Matches: 371, Mismatches: 24, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 325 0.88
49 46 0.12
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:26295508 original size:237 final size:237
Alignment explanation
Indices: 26295088--26295527 Score: 745
Period size: 237 Copynumber: 1.9 Consensus size: 237
26295078 CAAGACAGTG
26295088 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * *
26295153 TAATGGCCGATGTGATGAATGTGAAAGTTTATATGTGTGATAAGGCCTAATAGCCGATGTGATGA
66 TAATAGCCGATGTGAAGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGA
* * * * * *
26295218 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
131 ATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGCATAAAT
26295283 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
196 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
26295325 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
26295390 TAATAGCCGATGTGAAGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGA
66 TAATAGCCGATGTGAAGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGA
* * *
26295455 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAAT
131 ATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGCATAAAT
26295520 GTGATAAG
196 GTGATAAG
26295528 TCCCGAAGGG
Statistics
Matches: 188, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
237 188 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (237 bp):
TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATAGCCGATGTGAAGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGA
ATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGCATAAAT
GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:26295702 original size:37 final size:37
Alignment explanation
Indices: 26295646--26295724 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
26295636 CCGAGCTCTA
* *
26295646 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
26295683 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
26295720 AAGAC
1 AAGAC
26295725 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:26297637 original size:43 final size:43
Alignment explanation
Indices: 26297589--26297691 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
26297579 TTGGTTTTCA
26297589 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
26297632 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
26297675 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
26297692 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:26298181 original size:40 final size:40
Alignment explanation
Indices: 26298027--26298169 Score: 189
Period size: 40 Copynumber: 3.6 Consensus size: 40
26298017 TTGAATGATG
*
26298027 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
*
26298067 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
* *** * *
26298107 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
*
26298147 TCCGGGCT-AGGTCCGGAAGAGCA
1 TCCGGGCTAAGTTCC-GAAGAGCA
26298170 ATCATGCTGG
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
39 3 0.03
40 86 0.97
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:26301774 original size:47 final size:47
Alignment explanation
Indices: 26301713--26302156 Score: 710
Period size: 47 Copynumber: 9.4 Consensus size: 47
26301703 CAGCCAAGAC
26301713 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
26301760 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
26301807 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
26301854 AGTGTATATATGTGATAAGGCCTCATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
26301901 AGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
26301950 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATTAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
26301997 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
26302044 AGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* ** * * * *
26302091 AGTGTATATATGTGA-CAGGGTTGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAA
* *
26302138 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
26302157 TCCCGAAGGG
Statistics
Matches: 371, Mismatches: 22, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
46 4 0.01
47 320 0.86
48 2 0.01
49 45 0.12
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:26302040 original size:190 final size:190
Alignment explanation
Indices: 26301717--26302101 Score: 707
Period size: 190 Copynumber: 2.0 Consensus size: 190
26301707 CAAGACAGTG
* *
26301717 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
26301782 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGA
*
26301847 ATGTGAAAGTGTATATATGTGATAAGGCCTCATGGCCGATGTGATGAATGTGAAAGTGTA
131 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
26301907 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
26301972 TAATAGCCGATGTGATTAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGA
66 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGA
*
26302037 ATGTGAAAGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
131 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
26302097 TATAT
1 TATAT
26302102 GTGACAGGGT
Statistics
Matches: 188, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
190 188 1.00
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.31
Consensus pattern (190 bp):
TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:26302331 original size:37 final size:37
Alignment explanation
Indices: 26302275--26302353 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
26302265 CCGAGCTCTA
* *
26302275 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
26302312 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
26302349 AAGAC
1 AAGAC
26302354 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:26304263 original size:43 final size:43
Alignment explanation
Indices: 26304215--26304317 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
26304205 TTGGTTTTCA
26304215 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
26304258 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
26304301 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
26304318 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:26304735 original size:40 final size:40
Alignment explanation
Indices: 26304690--26304835 Score: 179
Period size: 40 Copynumber: 3.6 Consensus size: 40
26304680 CTAAGTGACC
*
26304690 ATATCCGGACTAAGTTCCAAAGAGCATTCGTGCTAGTGAT
1 ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
*
26304730 GTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
1 ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
*** * *
26304770 ATATCCGTG-CTAAACCCCGAAGAGCATTCGTGCTGGTGTT
1 ATATCCG-GACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
* *
26304810 ATATCCGGGCT-AGGTCCGGAAGAGCA
1 ATATCCGGACTAAGTTCC-GAAGAGCA
26304836 ATCATGCTGG
Statistics
Matches: 92, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
39 4 0.04
40 87 0.95
41 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAT
Found at i:26308433 original size:47 final size:47
Alignment explanation
Indices: 26308380--26308832 Score: 656
Period size: 47 Copynumber: 9.4 Consensus size: 47
26308370 CAGCCAAGAC
* *
26308380 AGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
26308427 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
26308474 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
26308521 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
26308568 AGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
26308617 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCC--------G-ATGTGATGAATGTGAA
26308673 AGTGTATATATGT-ACTAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGA-TAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
26308720 AGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
26308767 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
26308814 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
26308833 TCCCGAAGGG
Statistics
Matches: 374, Mismatches: 19, Indels: 26
0.89 0.05 0.06
Matches are distributed among these distances:
47 282 0.75
48 1 0.00
49 46 0.12
55 2 0.01
56 43 0.11
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:26308667 original size:56 final size:56
Alignment explanation
Indices: 26308601--26308765 Score: 233
Period size: 56 Copynumber: 3.1 Consensus size: 56
26308591 CTAATAGCCG
*
26308601 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26308657 ATGTGATGAATGTGAAAGTGTATATATGT-ACTAAGGCCTAATGGCC--------G-
1 ATGTGATGAATGTGAAAGTGTATATATGTGA-TAAGGCCTAATGGCCGATGTGATGA
*
26308704 ATGTGATGAATGTGAAAGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATGA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
26308760 ATGTGA
1 ATGTGA
26308766 AAGTGTATAT
Statistics
Matches: 96, Mismatches: 2, Indels: 22
0.80 0.02 0.18
Matches are distributed among these distances:
47 44 0.46
48 1 0.01
55 2 0.02
56 49 0.51
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (56 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:26308739 original size:103 final size:104
Alignment explanation
Indices: 26308552--26308765 Score: 369
Period size: 103 Copynumber: 2.1 Consensus size: 104
26308542 CTAATGGCCG
26308552 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
26308617 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
65 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
*
26308657 ATGTGATGAATGTGAAAGTG-TATATATGT-ACTAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGATATATATGTGA-TAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
26308720 AGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATGA
65 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
26308760 ATGTGA
1 ATGTGA
26308766 AAGTGTATAT
Statistics
Matches: 105, Mismatches: 3, Indels: 4
0.94 0.03 0.04
Matches are distributed among these distances:
102 1 0.01
103 84 0.80
105 20 0.19
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (104 bp):
ATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
GTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
Found at i:26309007 original size:37 final size:37
Alignment explanation
Indices: 26308951--26309028 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
26308941 CCGAGCTCTA
* *
26308951 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
26308988 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
26309025 AAGA
1 AAGA
26309029 TTTCGTAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:26311733 original size:53 final size:53
Alignment explanation
Indices: 26311660--26311869 Score: 240
Period size: 53 Copynumber: 4.0 Consensus size: 53
26311650 CCATGGCACT
* * * * *
26311660 AAAGAAGACCACGTCATGTAATACCCTAATTGGTGGGTTATGGCATCATATGG
1 AAAGAAGACCACATCATGTAAGACCGTAACTGGTGGGTTATGACATCATATGG
* * * *
26311713 AAAGAAGACCATATCCTGTAAGACCGTAACTGATAGGTTATGACATCATATGG
1 AAAGAAGACCACATCATGTAAGACCGTAACTGGTGGGTTATGACATCATATGG
* ** ** * * *
26311766 AAAGAAGAACTTATTGTGTAAGGCTGTAACTGGTGGGTTATGACATCTTATGG
1 AAAGAAGACCACATCATGTAAGACCGTAACTGGTGGGTTATGACATCATATGG
* * *
26311819 AAGGAAGACCACATCATGTAAGACCATAACTGGTTGGTTATGACATCATAT
1 AAAGAAGACCACATCATGTAAGACCGTAACTGGTGGGTTATGACATCATAT
26311870 CAGAAAAATT
Statistics
Matches: 128, Mismatches: 29, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
53 128 1.00
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.27
Consensus pattern (53 bp):
AAAGAAGACCACATCATGTAAGACCGTAACTGGTGGGTTATGACATCATATGG
Found at i:26312110 original size:61 final size:59
Alignment explanation
Indices: 26312034--26312245 Score: 196
Period size: 61 Copynumber: 3.5 Consensus size: 59
26312024 AGCCTTTATA
* *
26312034 GCAAAACTCTGGATAGGAAAATCTTTGTAGCGAGTATTGAATGTAAAAGGAAACTTTTGTG
1 GCAAAACTATAGATAGGAAAATCTTTGT-GCGAGTATTGAATGT-AAAGGAAACTTTTGTG
* * * ** *
26312095 GCAACACTATTGATAGGAAAGAT-TTTGTGGCTAGTACCGAATGTAAAGGAAAACTATTGTG
1 GCAAAACTATAGATAGGAAA-ATCTTTGT-GCGAGTATTGAATGTAAAGG-AAACTTTTGTG
* * * *
26312156 GCAAAACTCTAGATAGGAAAACCTTTGTGTCGAGTCCTT-AATGTAAAGGACAACCTTTGTG
1 GCAAAACTATAGATAGGAAAATCTTTGTG-CGAGT-ATTGAATGTAAAGGA-AACTTTTGTG
* *
26312217 GCAAAACTCTAGATA-GAAAAGCCTTTGTG
1 GCAAAACTATAGATAGGAAAA-TCTTTGTG
26312246 GCAACCTCTG
Statistics
Matches: 126, Mismatches: 18, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
60 13 0.10
61 111 0.88
62 2 0.02
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (59 bp):
GCAAAACTATAGATAGGAAAATCTTTGTGCGAGTATTGAATGTAAAGGAAACTTTTGTG
Found at i:26312183 original size:29 final size:29
Alignment explanation
Indices: 26312141--26312249 Score: 89
Period size: 29 Copynumber: 3.7 Consensus size: 29
26312131 CCGAATGTAA
26312141 AGGAAAA-CTATTGTGGCAAAACTCTAGAT
1 AGGAAAACCT-TTGTGGCAAAACTCTAGAT
* * ** *
26312170 AGGAAAACCTTTGTGTCGAGTC-CTTAATGTAA
1 AGGAAAACCTTTGTGGCAAAACTC-T-A-G-AT
*
26312202 AGGACAACCTTTGTGGCAAAACTCTAGAT
1 AGGAAAACCTTTGTGGCAAAACTCTAGAT
26312231 A-GAAAAGCCTTTGTGGCAA
1 AGGAAAA-CCTTTGTGGCAA
26312250 CCTCTGTTTA
Statistics
Matches: 61, Mismatches: 12, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
28 5 0.08
29 30 0.49
30 4 0.07
31 2 0.03
32 19 0.31
33 1 0.02
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.26
Consensus pattern (29 bp):
AGGAAAACCTTTGTGGCAAAACTCTAGAT
Found at i:26324093 original size:9 final size:9
Alignment explanation
Indices: 26324073--26324101 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
26324063 CAAATAATTC
26324073 ACACAA-CA
1 ACACAATCA
26324081 ACACAATCA
1 ACACAATCA
26324090 ACACAATCA
1 ACACAATCA
26324099 ACA
1 ACA
26324102 TTTAGCCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 6 0.30
9 14 0.70
ACGTcount: A:0.59, C:0.34, G:0.00, T:0.07
Consensus pattern (9 bp):
ACACAATCA
Found at i:26328376 original size:21 final size:21
Alignment explanation
Indices: 26328351--26328392 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
26328341 AAACCTGGTA
*
26328351 AAAGGTATCAATTCTTTTTGT
1 AAAGGTATCAATACTTTTTGT
26328372 AAAGGTATCAATACTTTTTGT
1 AAAGGTATCAATACTTTTTGT
26328393 GTAATTTGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.45
Consensus pattern (21 bp):
AAAGGTATCAATACTTTTTGT
Found at i:26331897 original size:26 final size:22
Alignment explanation
Indices: 26331845--26331899 Score: 58
Period size: 26 Copynumber: 2.4 Consensus size: 22
26331835 GAGTATAGGA
26331845 ATTTAT-AATTAATTATTATTT
1 ATTTATAAATTAATTATTATTT
*
26331866 AATTATAAATTAAATTATTAATATAT
1 ATTTATAAATT-AATTATT-AT-T-T
26331892 ATTTATAA
1 ATTTATAA
26331900 TTCTTCAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 5 0.19
22 4 0.15
23 7 0.26
24 2 0.07
25 1 0.04
26 8 0.30
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
ATTTATAAATTAATTATTATTT
Found at i:26332610 original size:56 final size:57
Alignment explanation
Indices: 26332507--26332618 Score: 133
Period size: 56 Copynumber: 2.0 Consensus size: 57
26332497 AAAAAATTAA
* *
26332507 AATTATTAAAAATATATATTTTTATAATTTTTTACTTTTGAATAATTTTAATATTTTT
1 AATTATTAAAAATATATATTTTTATAATTTTTAAATTTTGAATAATTTTAA-ATTTTT
* *
26332565 AATTTTTAAAAATA-A-A-TTTTATCAATTTTTAAAATTTTTAA-AATTTTAAATTTT
1 AATTATTAAAAATATATATTTTTAT-AATTTTT-AAATTTTGAATAATTTTAAATTTT
26332619 AAAAAATAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
55 11 0.23
56 16 0.33
57 8 0.17
58 13 0.27
ACGTcount: A:0.41, C:0.02, G:0.01, T:0.56
Consensus pattern (57 bp):
AATTATTAAAAATATATATTTTTATAATTTTTAAATTTTGAATAATTTTAAATTTTT
Found at i:26332624 original size:17 final size:17
Alignment explanation
Indices: 26332577--26332625 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
26332567 TTTTTAAAAA
* *
26332577 TAAATTTTATCAATTTT
1 TAAATTTTATAAAATTT
26332594 TAAAATTTT-TAAAATTT
1 T-AAATTTTATAAAATTT
*
26332611 TAAATTTTAAAAAAT
1 TAAATTTTATAAAAT
26332626 AAATTAATTG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 7 0.26
17 13 0.48
18 7 0.26
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (17 bp):
TAAATTTTATAAAATTT
Found at i:26351058 original size:10 final size:10
Alignment explanation
Indices: 26351041--26351086 Score: 51
Period size: 9 Copynumber: 4.7 Consensus size: 10
26351031 TTTATTTTTT
26351041 AAAA-TTTAA
1 AAAATTTTAA
26351050 AAAATTTT-A
1 AAAATTTTAA
26351059 AAAATTTTAA
1 AAAATTTTAA
* *
26351069 AAAAATTGATA
1 AAAATTTTA-A
26351080 AAAATTT
1 AAAATTT
26351087 ATTTTTTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
9 13 0.42
10 11 0.35
11 7 0.23
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (10 bp):
AAAATTTTAA
Found at i:26355292 original size:22 final size:21
Alignment explanation
Indices: 26355248--26355289 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
26355238 TTTAAATTAC
*
26355248 ACAAAAAGTATTGATACCTTT
1 ACAAAAAGAATTGATACCTTT
26355269 ACAAAAAGAAATTGA-ACCTTT
1 ACAAAAAG-AATTGATACCTTT
26355290 TACCAGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.48, C:0.14, G:0.10, T:0.29
Consensus pattern (21 bp):
ACAAAAAGAATTGATACCTTT
Found at i:26358047 original size:21 final size:21
Alignment explanation
Indices: 26358022--26358063 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
26358012 AAACCTGGTA
*
26358022 AAAGGTATCAATTCTTTTTGT
1 AAAGGTATCAATACTTTTTGT
26358043 AAAGGTATCAATACTTTTTGT
1 AAAGGTATCAATACTTTTTGT
26358064 GTAATTGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.45
Consensus pattern (21 bp):
AAAGGTATCAATACTTTTTGT
Found at i:26361562 original size:26 final size:22
Alignment explanation
Indices: 26361510--26361564 Score: 58
Period size: 26 Copynumber: 2.4 Consensus size: 22
26361500 GAGTATAGGA
26361510 ATTTAT-AATTAATTATTATTT
1 ATTTATAAATTAATTATTATTT
*
26361531 AATTATAAATTAAATTATTAATATAT
1 ATTTATAAATT-AATTATT-AT-T-T
26361557 ATTTATAA
1 ATTTATAA
26361565 TTCTTCAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 5 0.19
22 4 0.15
23 7 0.26
24 2 0.07
25 1 0.04
26 8 0.30
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
ATTTATAAATTAATTATTATTT
Found at i:26362295 original size:18 final size:18
Alignment explanation
Indices: 26362246--26362296 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
26362236 TTTTAAAAAA
* *
26362246 TAAATTTTATCAATTTTT
1 TAAATTTTATAAAATTTT
26362264 TAAAATTTT-TAAAATTTT
1 T-AAATTTTATAAAATTTT
*
26362282 TAAATTTTAAAAAAT
1 TAAATTTTATAAAAT
26362297 AAATTAATTG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
17 7 0.25
18 14 0.50
19 7 0.25
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (18 bp):
TAAATTTTATAAAATTTT
Found at i:26381956 original size:12 final size:11
Alignment explanation
Indices: 26381936--26381979 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
26381926 GAATGGAAAC
26381936 TAATTTTTTTT
1 TAATTTTTTTT
*
26381947 CAATTTTTTTT
1 TAATTTTTTTT
*
26381958 TGATTTTTTTT
1 TAATTTTTTTT
* *
26381969 GAGTTTTTTTT
1 TAATTTTTTTT
26381980 GTTTTGTTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.14, C:0.02, G:0.07, T:0.77
Consensus pattern (11 bp):
TAATTTTTTTT
Found at i:26381980 original size:11 final size:10
Alignment explanation
Indices: 26381951--26382002 Score: 58
Period size: 9 Copynumber: 5.5 Consensus size: 10
26381941 TTTTTTCAAT
26381951 TTTTTTTTGA
1 TTTTTTTTGA
26381961 TTTTTTTTGA
1 TTTTTTTTGA
26381971 GTTTTTTTTG-
1 -TTTTTTTTGA
*
26381981 TTTTGTTT--
1 TTTTTTTTGA
26381989 TTTTTTTT-A
1 TTTTTTTTGA
26381998 TTTTT
1 TTTTT
26382003 GAAAAAAACT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
8 7 0.18
9 12 0.32
10 10 0.26
11 9 0.24
ACGTcount: A:0.06, C:0.00, G:0.10, T:0.85
Consensus pattern (10 bp):
TTTTTTTTGA
Found at i:26400479 original size:15 final size:16
Alignment explanation
Indices: 26400453--26400482 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
26400443 TAAAAATAAT
26400453 TATGTGTTAAAATTTA
1 TATGTGTTAAAATTTA
26400469 TATGT-TTAAAATTT
1 TATGTGTTAAAATTT
26400483 TTAATGAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (16 bp):
TATGTGTTAAAATTTA
Found at i:26404531 original size:42 final size:44
Alignment explanation
Indices: 26404437--26404531 Score: 119
Period size: 42 Copynumber: 2.2 Consensus size: 44
26404427 TTCCTAGTGG
*
26404437 CATGC-ACTAGAGGGTCACATTTAAATTGCATAATATTCAGTTT
1 CATGCTACTAGAGAGTCACATTTAAATTGCATAATATTCAGTTT
*
26404480 CAT-CGTACTAGAGAGT-A-ATTTAAATTGCAT-ATACTTTAGTTT
1 CATGC-TACTAGAGAGTCACATTTAAATTGCATAATA-TTCAGTTT
26404522 CATGCTACTA
1 CATGCTACTA
26404532 TAAATTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
41 3 0.07
42 29 0.63
43 5 0.11
44 9 0.20
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.37
Consensus pattern (44 bp):
CATGCTACTAGAGAGTCACATTTAAATTGCATAATATTCAGTTT
Found at i:26411246 original size:21 final size:21
Alignment explanation
Indices: 26411201--26411263 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
26411191 TTTCAACCAT
* *
26411201 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
26411223 TACCATTTCGTACCAATTCCA
1 TACCATTTCGTACCAATTCCA
* *
26411244 TACTATTTCGAACCAATTCC
1 TACCATTTCGTACCAATTCC
26411264 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 24 0.65
22 13 0.35
ACGTcount: A:0.33, C:0.32, G:0.05, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:26411597 original size:11 final size:12
Alignment explanation
Indices: 26411580--26411615 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
26411570 AGGAGTTCGA
26411580 AAAAAAAAATTG
1 AAAAAAAAATTG
26411592 AAAAAAAAATTG
1 AAAAAAAAATTG
26411604 AAAAAAAAATTG
1 AAAAAAAAATTG
26411616 CATACGGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.17
Consensus pattern (12 bp):
AAAAAAAAATTG
Found at i:26416098 original size:21 final size:21
Alignment explanation
Indices: 26416053--26416115 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
26416043 TTTCAACCAT
* *
26416053 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
26416075 TACCATTTCGTACCAATTCCA
1 TACCATTTCGTACCAATTCCA
* *
26416096 TACTATTTCGAACCAATTCC
1 TACCATTTCGTACCAATTCC
26416116 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 24 0.65
22 13 0.35
ACGTcount: A:0.33, C:0.32, G:0.05, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:26433023 original size:12 final size:11
Alignment explanation
Indices: 26432990--26433019 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
26432980 AATCTTATAG
26432990 ACATTAAATAA
1 ACATTAAATAA
26433001 ACATTAAATAA
1 ACATTAAATAA
26433012 ACATTAAA
1 ACATTAAA
26433020 ATAATAATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (11 bp):
ACATTAAATAA
Found at i:26435006 original size:41 final size:41
Alignment explanation
Indices: 26434959--26435052 Score: 120
Period size: 41 Copynumber: 2.3 Consensus size: 41
26434949 TTGCAGATGT
** *
26434959 GTGCCCCTGA-TTGTACTTCGGTACCCATGAATTGCACATAC
1 GTGCCCCT-ATTTGTACTTCAATACCCATAAATTGCACATAC
*
26435000 AG-GCCCCTATTTGTACTTCAATACCCCTAAATTGCACATAC
1 -GTGCCCCTATTTGTACTTCAATACCCATAAATTGCACATAC
26435041 GTGCCCCTATTT
1 GTGCCCCTATTT
26435053 ACACTCCGAT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
40 2 0.04
41 43 0.93
42 1 0.02
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.31
Consensus pattern (41 bp):
GTGCCCCTATTTGTACTTCAATACCCATAAATTGCACATAC
Found at i:26441699 original size:50 final size:50
Alignment explanation
Indices: 26441526--26441817 Score: 247
Period size: 49 Copynumber: 5.8 Consensus size: 50
26441516 GATAATAACA
* *
26441526 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGAGATGTT-TCATGTAC-
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGT-CG
** *
26441575 TGCCAATGCCATAACCCAGATATGGTCTTACATGGGATGTT-TCATGTAC-
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGT-CG
** * * *
26441624 TGCCAATGCCATAACCAAGATATGGTCTTACATGGGA-GTTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTC-G
* * ** *
26441674 TGCCAACGCCATGTCCCACACATGGTCTTACATGGGA-CCTCTCGTGTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTC-G
* * * **
26441724 TGCCAATGCCATGTCCTAGACATGGTTTTGCATGGGA-CCTCTCATGATCTCAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATG---TC---G
*
26441779 ATGCCAATGTCATGTCCCAGACATGGTCTTACATGGGAT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
26441818 CTCTTTACCC
Statistics
Matches: 204, Mismatches: 29, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
48 4 0.02
49 85 0.42
50 79 0.39
53 2 0.01
55 1 0.00
56 33 0.16
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTCG
Found at i:26449222 original size:50 final size:50
Alignment explanation
Indices: 26449101--26449385 Score: 279
Period size: 50 Copynumber: 5.6 Consensus size: 50
26449091 ACATGCGAAA
* * * *
26449101 GCCATGTCCCAAACATGGTCTTACATGGGA-TGTTTCATGTAC--TACCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACT-TCTCATCT-CGGTGCCAAT
* * * * * *
26449150 GTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATCTCGGTGCCAAT
** * *
26449200 GCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATCTCGGTGCCAAT
* * *
26449250 GCCGTGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGTGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATCTCGGTGCCAAT
* * * * *
26449300 GTCATTTCCCAGACATGGCCTTACATGGGACCTCTCACGATCTCAAGGATGTCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGA-CT-TCTC-ATCTC--GG-TGCCAAT
26449356 GCCATGTCCCAGACATGGTCTTACATGGGA
1 GCCATGTCCCAGACATGGTCTTACATGGGA
26449386 TCTCTTTACC
Statistics
Matches: 193, Mismatches: 34, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
48 1 0.01
49 32 0.17
50 117 0.61
51 1 0.01
52 3 0.02
53 4 0.02
55 2 0.01
56 33 0.17
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATCTCGGTGCCAAT
Found at i:26452289 original size:20 final size:20
Alignment explanation
Indices: 26452264--26452326 Score: 54
Period size: 20 Copynumber: 3.1 Consensus size: 20
26452254 GTACAAACAA
26452264 GGGCACGTATGTGCATTCAG
1 GGGCACGTATGTGCATTCAG
** * * **
26452284 GGGCACCAAAGTACAAACAG
1 GGGCACGTATGTGCATTCAG
* *
26452304 GGGCATGTATGTGAATTCAG
1 GGGCACGTATGTGCATTCAG
26452324 GGG
1 GGG
26452327 TACCAAAGTA
Statistics
Matches: 29, Mismatches: 14, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.29, C:0.17, G:0.35, T:0.19
Consensus pattern (20 bp):
GGGCACGTATGTGCATTCAG
Found at i:26452308 original size:40 final size:40
Alignment explanation
Indices: 26452221--26452481 Score: 288
Period size: 40 Copynumber: 6.5 Consensus size: 40
26452211 AAAATAGAAT
* * * * *
26452221 CAGGAGCATGTATATGCCTTTAGGAGTACCGAAGTACAAA
1 CAGGGGCATGTATGTGCATTCAGGGGTACCGAAGTACAAA
* * * *
26452261 CAAGGGCACGTATGTGCATTCAGGGGCACCAAAGTACAAA
1 CAGGGGCATGTATGTGCATTCAGGGGTACCGAAGTACAAA
* *
26452301 CAGGGGCATGTATGTGAATTCAGGGGTACCAAAGTACAAA
1 CAGGGGCATGTATGTGCATTCAGGGGTACCGAAGTACAAA
* * * * * * *
26452341 AAAGAGCATGTATGTGGATTCAAGGGTACTGATGTACAAA
1 CAGGGGCATGTATGTGCATTCAGGGGTACCGAAGTACAAA
* ** *
26452381 TAGGGGCACATATGTGCATTCAGGGGTACCGAAGTATAAA
1 CAGGGGCATGTATGTGCATTCAGGGGTACCGAAGTACAAA
**
26452421 CAGGGGCATGTATGTGCATTCAGGGGTATTGAAGTACAAA
1 CAGGGGCATGTATGTGCATTCAGGGGTACCGAAGTACAAA
* *
26452461 TAGGGGCATGTAAGTGCATTC
1 CAGGGGCATGTATGTGCATTC
26452482 CTACAATAAT
Statistics
Matches: 182, Mismatches: 39, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 182 1.00
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.22
Consensus pattern (40 bp):
CAGGGGCATGTATGTGCATTCAGGGGTACCGAAGTACAAA
Found at i:26452470 original size:120 final size:120
Alignment explanation
Indices: 26452254--26452481 Score: 321
Period size: 120 Copynumber: 1.9 Consensus size: 120
26452244 GAGTACCGAA
*
26452254 GTACAAACAAGGGCACGTATGTGCATTCAGGGGCACCAAAGTACAAACAGGGGCATGTATGTGAA
1 GTACAAACAAGGGCACATATGTGCATTCAGGGGCACCAAAGTACAAACAGGGGCATGTATGTGAA
* *
26452319 TTCAGGGGTACCAAAGTACAAAAAAGAGCATGTATGTGGATTCAAGGGTACTGAT
66 TTCAGGGGTACCAAAGTACAAAAAAGAGCATGTAAGTGCATTCAAGGGTACTGAT
* * * * * *
26452374 GTACAAATAGGGGCACATATGTGCATTCAGGGGTACCGAAGTATAAACAGGGGCATGTATGTGCA
1 GTACAAACAAGGGCACATATGTGCATTCAGGGGCACCAAAGTACAAACAGGGGCATGTATGTGAA
*** * * *
26452439 TTCAGGGGTATTGAAGTACAAATAGGGGCATGTAAGTGCATTC
66 TTCAGGGGTACCAAAGTACAAAAAAGAGCATGTAAGTGCATTC
26452482 CTACAATAAT
Statistics
Matches: 93, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
120 93 1.00
ACGTcount: A:0.34, C:0.15, G:0.29, T:0.22
Consensus pattern (120 bp):
GTACAAACAAGGGCACATATGTGCATTCAGGGGCACCAAAGTACAAACAGGGGCATGTATGTGAA
TTCAGGGGTACCAAAGTACAAAAAAGAGCATGTAAGTGCATTCAAGGGTACTGAT
Found at i:26456298 original size:40 final size:40
Alignment explanation
Indices: 26456254--26456575 Score: 371
Period size: 40 Copynumber: 8.1 Consensus size: 40
26456244 TGTATATGAC
* * * *
26456254 TTCAGGGGTACTGAAA-TACAAACAAGGGCATGTATGTGGA
1 TTCAGGGGTAC-CAAAGTACAAATAAGGGCACGTATGTGCA
* *
26456294 TTCAGGGGTACCGAAGTGCAAATAAGGGCACGTATGTGCA
1 TTCAGGGGTACCAAAGTACAAATAAGGGCACGTATGTGCA
*
26456334 TTTAGGGGTACCAAAGTACAAA-AAGAGGCACGTATGTGCA
1 TTCAGGGGTACCAAAGTACAAATAAG-GGCACGTATGTGCA
* * *
26456374 TTCAGGGTTACTAAAGTACAAATAGGGGCACGTATGTGCA
1 TTCAGGGGTACCAAAGTACAAATAAGGGCACGTATGTGCA
* * * * * *
26456414 TTCAAGGGTATCGAAGTACAAA-AAGGGGCATGTATGAGAA
1 TTCAGGGGTACCAAAGTACAAATAA-GGGCACGTATGTGCA
* * *
26456454 TTTAGGGGTACCAAAGTACAAATAGGGGCACATATGTGCA
1 TTCAGGGGTACCAAAGTACAAATAAGGGCACGTATGTGCA
* *
26456494 TTTAGGGGTACCAAAGTACAAACAAGGGCACGTATGTGCA
1 TTCAGGGGTACCAAAGTACAAATAAGGGCACGTATGTGCA
* * * *
26456534 TTCAGGGGTAGCGAAGTACAAATAGGGGCACGCATGTGCA
1 TTCAGGGGTACCAAAGTACAAATAAGGGCACGTATGTGCA
26456574 TT
1 TT
26456576 AATATAATAA
Statistics
Matches: 237, Mismatches: 40, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
39 6 0.03
40 228 0.96
41 3 0.01
ACGTcount: A:0.34, C:0.15, G:0.30, T:0.21
Consensus pattern (40 bp):
TTCAGGGGTACCAAAGTACAAATAAGGGCACGTATGTGCA
Found at i:26456396 original size:80 final size:80
Alignment explanation
Indices: 26456257--26456575 Score: 410
Period size: 80 Copynumber: 4.0 Consensus size: 80
26456247 ATATGACTTC
* * * * * *
26456257 AGGGGTACTGAAA-TACAAACAAGGGCATGTATGTGGATTCAGGGGTACCGAAGTGCAAATAAGG
1 AGGGGTAC-CAAAGTACAAACAAGGGCACGTATGTGCATTCAGGGGTACCAAAGTACAAATAGGG
26456321 GCACGTATGTGCATTT
65 GCACGTATGTGCATTT
* *
26456337 AGGGGTACCAAAGTACAAA-AAGAGGCACGTATGTGCATTCAGGGTTACTAAAGTACAAATAGGG
1 AGGGGTACCAAAGTACAAACAAG-GGCACGTATGTGCATTCAGGGGTACCAAAGTACAAATAGGG
*
26456401 GCACGTATGTGCATTC
65 GCACGTATGTGCATTT
* * * * * * *
26456417 AAGGGTATCGAAGTACAAA-AAGGGGCATGTATGAGAATTTAGGGGTACCAAAGTACAAATAGGG
1 AGGGGTACCAAAGTACAAACAA-GGGCACGTATGTGCATTCAGGGGTACCAAAGTACAAATAGGG
*
26456481 GCACATATGTGCATTT
65 GCACGTATGTGCATTT
* *
26456497 AGGGGTACCAAAGTACAAACAAGGGCACGTATGTGCATTCAGGGGTAGCGAAGTACAAATAGGGG
1 AGGGGTACCAAAGTACAAACAAGGGCACGTATGTGCATTCAGGGGTACCAAAGTACAAATAGGGG
*
26456562 CACGCATGTGCATT
66 CACGTATGTGCATT
26456576 AATATAATAA
Statistics
Matches: 204, Mismatches: 31, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
79 6 0.03
80 195 0.96
81 3 0.01
ACGTcount: A:0.34, C:0.15, G:0.30, T:0.21
Consensus pattern (80 bp):
AGGGGTACCAAAGTACAAACAAGGGCACGTATGTGCATTCAGGGGTACCAAAGTACAAATAGGGG
CACGTATGTGCATTT
Found at i:26456443 original size:120 final size:120
Alignment explanation
Indices: 26456254--26456575 Score: 441
Period size: 120 Copynumber: 2.7 Consensus size: 120
26456244 TGTATATGAC
* * *
26456254 TTCAGGGGTACTGAAA-TACAAACAAGGGCATGTATGTGGATTCAGGGGTACCGAAGTGCAAATA
1 TTCAGGGGTACT-AAAGTACAAACAAGGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAA-A
*
26456318 A-GGGCACGTATGTGCATTTAGGGGTACCAAAGTACAAAAAGAGGCACGTATGTGCA
64 AGGGGCACGTATGTGCATTTAGGGGTACCAAAGTACAAAAAGAGGCACATATGTGCA
* * * * *
26456374 TTCAGGGTTACTAAAGTACAAATAGGGGCACGTATGTGCATTCAAGGGTATCGAAGTACAAAAAG
1 TTCAGGGGTACTAAAGTACAAACAAGGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAAAAG
* * * * *
26456439 GGGCATGTATGAGAATTTAGGGGTACCAAAGTACAAATAGGGGCACATATGTGCA
66 GGGCACGTATGTGCATTTAGGGGTACCAAAGTACAAAAAGAGGCACATATGTGCA
* * * *
26456494 TTTAGGGGTACCAAAGTACAAACAAGGGCACGTATGTGCATTCAGGGGTAGCGAAGTACAAATAG
1 TTCAGGGGTACTAAAGTACAAACAAGGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAAAAG
*
26456559 GGGCACGCATGTGCATT
66 GGGCACGTATGTGCATT
26456576 AATATAATAA
Statistics
Matches: 174, Mismatches: 26, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
119 5 0.03
120 169 0.97
ACGTcount: A:0.34, C:0.15, G:0.30, T:0.21
Consensus pattern (120 bp):
TTCAGGGGTACTAAAGTACAAACAAGGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAAAAG
GGGCACGTATGTGCATTTAGGGGTACCAAAGTACAAAAAGAGGCACATATGTGCA
Found at i:26456479 original size:20 final size:20
Alignment explanation
Indices: 26456456--26456515 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
26456446 TATGAGAATT
26456456 TAGGGGTACCAAAGTACAAA
1 TAGGGGTACCAAAGTACAAA
* * * **
26456476 TAGGGGCA-CATATGTGCATT
1 TAGGGGTACCA-AAGTACAAA
26456496 TAGGGGTACCAAAGTACAAA
1 TAGGGGTACCAAAGTACAAA
26456516 CAAGGGCACG
Statistics
Matches: 28, Mismatches: 10, Indels: 4
0.67 0.24 0.10
Matches are distributed among these distances:
19 2 0.07
20 24 0.86
21 2 0.07
ACGTcount: A:0.38, C:0.15, G:0.27, T:0.20
Consensus pattern (20 bp):
TAGGGGTACCAAAGTACAAA
Found at i:26458609 original size:50 final size:50
Alignment explanation
Indices: 26458539--26458638 Score: 173
Period size: 50 Copynumber: 2.0 Consensus size: 50
26458529 GATCTGATAA
*
26458539 ATCTGAAGTAAACTCGGTTTGGTTATTCTTATGATGAAATTGAATAAGTC
1 ATCTAAAGTAAACTCGGTTTGGTTATTCTTATGATGAAATTGAATAAGTC
* *
26458589 ATCTAAAGTGAACTTGGTTTGGTTATTCTTATGATGAAATTGAATAAGTC
1 ATCTAAAGTAAACTCGGTTTGGTTATTCTTATGATGAAATTGAATAAGTC
26458639 TTAAGGGACG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (50 bp):
ATCTAAAGTAAACTCGGTTTGGTTATTCTTATGATGAAATTGAATAAGTC
Found at i:26458714 original size:62 final size:62
Alignment explanation
Indices: 26458612--26458742 Score: 235
Period size: 62 Copynumber: 2.1 Consensus size: 62
26458602 TTGGTTTGGT
*
26458612 TATTCTTATGATGAAATTGAATAAGTCTTAAGGGACGGTTCTTAAAAGATAGTATGTATATG
1 TATTCTTATGATGAAATTGAATAAGTCTTAAGGGACGGTTCTTAAAAGAAAGTATGTATATG
*
26458674 TATTCTTATGATGAAATTGAATAAGTCTTAAGGGATGGTTCTTAAAAGAAAGTATGTATATG
1 TATTCTTATGATGAAATTGAATAAGTCTTAAGGGACGGTTCTTAAAAGAAAGTATGTATATG
26458736 TAATTCT
1 T-ATTCT
26458743 AAAGAGGTAA
Statistics
Matches: 66, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
62 61 0.92
63 5 0.08
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (62 bp):
TATTCTTATGATGAAATTGAATAAGTCTTAAGGGACGGTTCTTAAAAGAAAGTATGTATATG
Found at i:26469029 original size:26 final size:27
Alignment explanation
Indices: 26469000--26469050 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
26468990 AGCAATCAAA
26469000 AAATGGGA-AAGGGAAAATAAGAGAGC
1 AAATGGGAGAAGGGAAAATAAGAGAGC
* *
26469026 AAATGGGAGAAGTGAAAATGAGAGA
1 AAATGGGAGAAGGGAAAATAAGAGA
26469051 AATGGATGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.53, C:0.02, G:0.35, T:0.10
Consensus pattern (27 bp):
AAATGGGAGAAGGGAAAATAAGAGAGC
Found at i:26469889 original size:73 final size:73
Alignment explanation
Indices: 26469780--26469932 Score: 288
Period size: 73 Copynumber: 2.1 Consensus size: 73
26469770 AAAGTCTATA
26469780 AATTTTTTAGTTTCCACACCCCTAAACTTAATTCATTTCTCATCTCAAGTAAAGCTAACTTACAA
1 AATTTTTTAGTTTCCACACCCCTAAACTTAATTCATTTCTCATCTCAAGTAAAGCTAACTTACAA
26469845 AAGAATTT
66 AAGAATTT
* *
26469853 AATTTTTTAGTTTCCGCACCCCTAAACTTAATTCATTTCTCATCTCAAGTAATGCTAACTTACAA
1 AATTTTTTAGTTTCCACACCCCTAAACTTAATTCATTTCTCATCTCAAGTAAAGCTAACTTACAA
26469918 AAGAATTT
66 AAGAATTT
26469926 AATTTTT
1 AATTTTT
26469933 AAGAGATTCC
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
73 78 1.00
ACGTcount: A:0.34, C:0.21, G:0.06, T:0.39
Consensus pattern (73 bp):
AATTTTTTAGTTTCCACACCCCTAAACTTAATTCATTTCTCATCTCAAGTAAAGCTAACTTACAA
AAGAATTT
Found at i:26472653 original size:26 final size:26
Alignment explanation
Indices: 26472613--26472671 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 26
26472603 AAATGGGCAC
26472613 TAAAATTACTCAAATA-CCCTCGA-AGGG
1 TAAAA-TACTCAAATAGCCCT--ATAGGG
*
26472640 TAAAATACTGAAATAGCCCTATAGGG
1 TAAAATACTCAAATAGCCCTATAGGG
26472666 TAAAAT
1 TAAAAT
26472672 GACCGTTATA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.03
26 19 0.66
27 9 0.31
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.24
Consensus pattern (26 bp):
TAAAATACTCAAATAGCCCTATAGGG
Found at i:26473097 original size:28 final size:30
Alignment explanation
Indices: 26473066--26473179 Score: 121
Period size: 30 Copynumber: 3.9 Consensus size: 30
26473056 TACTATTTTT
26473066 GGCTAAGGCCCACA-T-TGATACTGTATTG
1 GGCTAAGGCCCACACTCTGATACTGTATTG
* *
26473094 GGCTAAGGCCCACACTCTGTTACAGTATTG
1 GGCTAAGGCCCACACTCTGATACTGTATTG
* **
26473124 GGCTATGGCCCACACTCT-ACTACTGTATAA
1 GGCTAAGGCCCACACTCTGA-TACTGTATTG
* *
26473154 GGCTCAGGCCCAGA--CTGATACTGTAT
1 GGCTAAGGCCCACACTCTGATACTGTAT
26473180 GTTGTATGCC
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
28 24 0.33
29 2 0.03
30 46 0.64
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (30 bp):
GGCTAAGGCCCACACTCTGATACTGTATTG
Found at i:26474034 original size:42 final size:42
Alignment explanation
Indices: 26473980--26474070 Score: 155
Period size: 42 Copynumber: 2.2 Consensus size: 42
26473970 AATTGCTTTT
* *
26473980 CATAAAACATCTGTTAATAATTACTGGAATTATAAATTGATA
1 CATAAAAAATCTGTTAATAATTACTGGAATTATAAACTGATA
*
26474022 CATAAAAAATCTGTTAATAATTACTGGAATTATAAGCTGATA
1 CATAAAAAATCTGTTAATAATTACTGGAATTATAAACTGATA
26474064 CATAAAA
1 CATAAAA
26474071 CTTCTTAAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.47, C:0.10, G:0.10, T:0.33
Consensus pattern (42 bp):
CATAAAAAATCTGTTAATAATTACTGGAATTATAAACTGATA
Found at i:26486027 original size:25 final size:24
Alignment explanation
Indices: 26485983--26486035 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
26485973 CCATGTAGAA
*
26485983 AAATGTCAAGTCAAAATCCAAAAT
1 AAATGTCAAATCAAAATCCAAAAT
* *
26486007 AAATGTCCAAATCAAAGTCCATAAT
1 AAATGT-CAAATCAAAATCCAAAAT
26486032 AAAT
1 AAAT
26486036 AAACACAACC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.53, C:0.17, G:0.08, T:0.23
Consensus pattern (24 bp):
AAATGTCAAATCAAAATCCAAAAT
Found at i:26490751 original size:44 final size:43
Alignment explanation
Indices: 26490703--26491176 Score: 312
Period size: 44 Copynumber: 10.9 Consensus size: 43
26490693 GATCCAAGGT
*
26490703 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAT-GGC
*
26490747 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-TGCC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATGGC
* * * * *
26490789 ATCTTCAGTCTAC-CTCACTGCAACTTCA-GGAGGATAA-A-AATAGA
1 -T-TT-AATCTGCTC-CACTGCAACTTCAGGGA-GATAAGATTATGGC
* * * ** * * *
26490833 TGTGATCTGATCTC-C-GCAACTTCAAAGAAATAAGATCTAAGGT
1 TTTAATCTGCTC-CACTGCAACTTCAGGGAGATAAGAT-TATGGC
*
26490876 TTTAAT-TCGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGC
1 TTTAATCT-GCTCCACTGCAACTTCAGGGAGATAAGATTA-TGGC
* *
26490920 TTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGATT-TGCC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATGGC
* * *
26490962 ATCTTCAGTCTAC-CTCACTGCAACTTCA-GGAGGATAAGAATA-GATGC
1 -T-TT-AATCTGCTC-CACTGCAACTTCAGGGA-GATAAGATTATG--GC
* * * *
26491009 TTACTTAGTCTGCTCCACTGCAACTTCAGGGAGGTAAGACTA--GA
1 -T--TTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATGGC
** * * * *
26491053 TGCAATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTAAGGT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TATGGC
* * * *
26491096 TTTAATCCGCTTCACTGCAACTTCAGGGAGATAGGATTATCAGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAT-GGC
* *
26491140 TTTAATCTGTTCCACTACAACTTCAGGGAGATAAGAT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
26491177 CTGCCATCTT
Statistics
Matches: 335, Mismatches: 63, Indels: 64
0.73 0.14 0.14
Matches are distributed among these distances:
40 34 0.10
41 16 0.05
42 11 0.03
43 28 0.08
44 160 0.48
45 50 0.15
47 29 0.09
48 7 0.02
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (43 bp):
TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATGGC
Found at i:26490923 original size:173 final size:173
Alignment explanation
Indices: 26490631--26491008 Score: 625
Period size: 173 Copynumber: 2.2 Consensus size: 173
26490621 TAGTCTGCTC
* * * * * *
26490631 CACTGCAACTTCAGG-GAAATAAGAATAGATGCGATTTGCTCTCCGTAACTTTAGAGAAATAAGA
1 CACTGCAACTTCAGGAG-GATAAGAATAGATGCGATCTGATCTCCGCAACTTCAAAGAAATAAGA
26490695 TCCAAGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCC
65 TCCAAGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCC
26490760 ACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTACCT
130 ACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTACCT
* *
26490804 CACTGCAACTTCAGGAGGATAAAAATAGATGTGATCTGATCTCCGCAACTTCAAAGAAATAAGAT
1 CACTGCAACTTCAGGAGGATAAGAATAGATGCGATCTGATCTCCGCAACTTCAAAGAAATAAGAT
* *
26490869 CTAAGGTTTTAAT-TCGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCC
66 CCAAGGTTTTAATCT-GCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCC
*
26490933 ACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTACCT
130 ACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTACCT
26490977 CACTGCAACTTCAGGAGGATAAGAATAGATGC
1 CACTGCAACTTCAGGAGGATAAGAATAGATGC
26491009 TTACTTAGTC
Statistics
Matches: 190, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
172 1 0.01
173 188 0.99
174 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (173 bp):
CACTGCAACTTCAGGAGGATAAGAATAGATGCGATCTGATCTCCGCAACTTCAAAGAAATAAGAT
CCAAGGTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCA
CTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTACCT
Found at i:26491089 original size:220 final size:220
Alignment explanation
Indices: 26490804--26491216 Score: 648
Period size: 220 Copynumber: 1.9 Consensus size: 220
26490794 CAGTCTACCT
**
26490804 CACTGCAACTTCAGGAGGATAAAAATAGATGTGATCTGATCTCCGCAACTTCAAAGAAATAAGAT
1 CACTGCAACTTCAGGAGGATAAAAATAGATGCAATCTGATCTCCGCAACTTCAAAGAAATAAGAT
* **
26490869 CTAAGGTTTTAATTCGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCA
66 CTAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTTAATCTGCTCCA
** * *
26490934 CTGTAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTACCTCACTGCAACTTCAGGAGGATAA
131 CTACAACTTCAGGGAGATAAGATCTGCCATCTTCAGCCTACCTCACTGCAACTTCAGGAGGATAA
26490999 GAATAGATGCTTACTTAGTCTGCTC
196 GAATAGATGCTTACTTAGTCTGCTC
* * * * * *
26491024 CACTGCAACTTCAGGGAGG-TAAGACTAGATGCAATCTGCTCTCTGCAACTTCAGAGAGATAAGA
1 CACTGCAACTTCA-GGAGGATAAAAATAGATGCAATCTGATCTCCGCAACTTCAAAGAAATAAGA
* *
26491088 TCTAAGGTTTTAATCCGCTTCACTGCAACTTCAGGGAGATAGGATTATCAGCTTTAATCTGTTCC
65 TCTAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTTAATCTGCTCC
*
26491153 ACTACAACTTCAGGGAGATAAGATCTGCCATCTTCAGCCTACCTCATTGCAACTTCAGGAGGAT
130 ACTACAACTTCAGGGAGATAAGATCTGCCATCTTCAGCCTACCTCACTGCAACTTCAGGAGGAT
26491217 CAACTTCAGG
Statistics
Matches: 174, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
220 169 0.97
221 5 0.03
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (220 bp):
CACTGCAACTTCAGGAGGATAAAAATAGATGCAATCTGATCTCCGCAACTTCAAAGAAATAAGAT
CTAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTTAATCTGCTCCA
CTACAACTTCAGGGAGATAAGATCTGCCATCTTCAGCCTACCTCACTGCAACTTCAGGAGGATAA
GAATAGATGCTTACTTAGTCTGCTC
Found at i:26491222 original size:15 final size:15
Alignment explanation
Indices: 26491202--26491231 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
26491192 TACCTCATTG
26491202 CAACTTCAGGAGGAT
1 CAACTTCAGGAGGAT
26491217 CAACTTCAGGAGGAT
1 CAACTTCAGGAGGAT
26491232 AAGACCCGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.27, T:0.20
Consensus pattern (15 bp):
CAACTTCAGGAGGAT
Found at i:26507725 original size:63 final size:63
Alignment explanation
Indices: 26507626--26507753 Score: 256
Period size: 63 Copynumber: 2.0 Consensus size: 63
26507616 TTAAAACTTA
26507626 ACTAAAATGCTTATGTTCAAGCTCCTAAAGTGCAAAAACTAGTTTAATCTACTACACCGAATT
1 ACTAAAATGCTTATGTTCAAGCTCCTAAAGTGCAAAAACTAGTTTAATCTACTACACCGAATT
26507689 ACTAAAATGCTTATGTTCAAGCTCCTAAAGTGCAAAAACTAGTTTAATCTACTACACCGAATT
1 ACTAAAATGCTTATGTTCAAGCTCCTAAAGTGCAAAAACTAGTTTAATCTACTACACCGAATT
26507752 AC
1 AC
26507754 GACAGATCAA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (63 bp):
ACTAAAATGCTTATGTTCAAGCTCCTAAAGTGCAAAAACTAGTTTAATCTACTACACCGAATT
Found at i:26510517 original size:17 final size:17
Alignment explanation
Indices: 26510495--26510536 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
26510485 AACAAAATGA
*
26510495 GATTTTGGGGTTTTA-AG
1 GATTTTGGAG-TTTAGAG
26510512 GATTTTAGGAGTTTAGAG
1 GATTTT-GGAGTTTAGAG
26510530 GATTTTG
1 GATTTTG
26510537 AAAGAATTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 11 0.50
18 11 0.50
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.45
Consensus pattern (17 bp):
GATTTTGGAGTTTAGAG
Found at i:26511588 original size:13 final size:13
Alignment explanation
Indices: 26511554--26511588 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
26511544 TAAGGCACAC
26511554 GGCTGTGTGAGTA
1 GGCTGTGTGAGTA
**
26511567 GGCCATGTGAGTA
1 GGCTGTGTGAGTA
26511580 GGCTGTGTG
1 GGCTGTGTG
26511589 TGGCACACGG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.14, C:0.11, G:0.46, T:0.29
Consensus pattern (13 bp):
GGCTGTGTGAGTA
Found at i:26512357 original size:20 final size:20
Alignment explanation
Indices: 26512332--26512411 Score: 74
Period size: 20 Copynumber: 4.0 Consensus size: 20
26512322 GATGTATAAC
*
26512332 AGAGGCATCGAAGTGCAAAT
1 AGAGGCACCGAAGTGCAAAT
* *
26512352 AGAGGCA-CGAA-TGTACGAT
1 AGAGGCACCGAAGTGCA-AAT
* *
26512371 CAAAGGCACCGAAGTGCAAAA
1 -AGAGGCACCGAAGTGCAAAT
*
26512392 AGAGGCACCGAAGTGTAAAT
1 AGAGGCACCGAAGTGCAAAT
26512412 TCAGTGCAAG
Statistics
Matches: 47, Mismatches: 9, Indels: 8
0.73 0.14 0.12
Matches are distributed among these distances:
18 3 0.06
19 6 0.13
20 30 0.64
21 5 0.11
22 3 0.06
ACGTcount: A:0.41, C:0.17, G:0.29, T:0.12
Consensus pattern (20 bp):
AGAGGCACCGAAGTGCAAAT
Found at i:26514910 original size:230 final size:230
Alignment explanation
Indices: 26514497--26514957 Score: 823
Period size: 230 Copynumber: 2.0 Consensus size: 230
26514487 ATAAGAACAC
26514497 TACAAGAAGAGCTCATGTTAACTTGTTCTCCTACCTTAATTTTCCTACGCCTAGACATGATTTCC
1 TACAAGAAGAGCTCATGTTAACTTGTTCTCCTACCTTAATTTTCCTACGCCTAGACATGATTTCC
26514562 TTTAAAATTTTGGCATACTTAGGAACTTTTTCAATCAAATACAGGTTGACATCTAATGTTTTGAA
66 TTTAAAATTTTGGCATACTTAGGAACTTTTTCAATCAAATACAGGTTGACATCTAATGTTTTGAA
* *
26514627 CAAGTTTAAAAAACTTACAACCTCGTTTCCATCCCACTTTTATTTCTCTTCTAGCCTTGAAGGTT
131 CAAGTTTAAAAAACTTACAACCTCATTTCCATCCCACTTTTATTTCTCTTCTAGCCTTGAAGGGT
* **
26514692 ACGGTATCTTTGCAATGGCAAAATCTTTAATTGTT
196 ACGATATCTTTGCAACAGCAAAATCTTTAATTGTT
* * *
26514727 TACAATAAGTGCTCATGTTAACTTGTTCTCCTACCTTAATTTTCCTATGCCTAGACATGATTTCC
1 TACAAGAAGAGCTCATGTTAACTTGTTCTCCTACCTTAATTTTCCTACGCCTAGACATGATTTCC
* *
26514792 TTTAAAATTTTGGCATACTTAGGAACTTTTTCAATCAAATGCAGGTTGACATCTAATTTTTTGAA
66 TTTAAAATTTTGGCATACTTAGGAACTTTTTCAATCAAATACAGGTTGACATCTAATGTTTTGAA
26514857 CAAGTTTAAAAAACTTACAACCTCATTTCCATCCCACTTTTATTTCTCTTCTAGCCTTGAAGGGT
131 CAAGTTTAAAAAACTTACAACCTCATTTCCATCCCACTTTTATTTCTCTTCTAGCCTTGAAGGGT
*
26514922 ACGATATCTTTGCAACAGCAGAATCTTTAATTGTT
196 ACGATATCTTTGCAACAGCAAAATCTTTAATTGTT
26514957 T
1 T
26514958 CTATCTCTAG
Statistics
Matches: 220, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
230 220 1.00
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (230 bp):
TACAAGAAGAGCTCATGTTAACTTGTTCTCCTACCTTAATTTTCCTACGCCTAGACATGATTTCC
TTTAAAATTTTGGCATACTTAGGAACTTTTTCAATCAAATACAGGTTGACATCTAATGTTTTGAA
CAAGTTTAAAAAACTTACAACCTCATTTCCATCCCACTTTTATTTCTCTTCTAGCCTTGAAGGGT
ACGATATCTTTGCAACAGCAAAATCTTTAATTGTT
Found at i:26515143 original size:24 final size:24
Alignment explanation
Indices: 26515111--26515156 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
26515101 GATCAAGCGC
*
26515111 TATTGCTTCCACATGCTCCTTCGT
1 TATTGCTTCAACATGCTCCTTCGT
26515135 TATTGCTTCAACATGCTCCTTC
1 TATTGCTTCAACATGCTCCTTC
26515157 CCTTCTCTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.15, C:0.33, G:0.11, T:0.41
Consensus pattern (24 bp):
TATTGCTTCAACATGCTCCTTCGT
Found at i:26525322 original size:46 final size:46
Alignment explanation
Indices: 26525255--26525791 Score: 672
Period size: 46 Copynumber: 12.6 Consensus size: 46
26525245 TTTGAGTACT
* *
26525255 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
26525301 TCTGATCAAGTGACAAAGTGATAA---GTA-C--T-G---CACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
26525337 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
26525383 TCTGATCAAGTGAAAAAGTGAT-A-----AG---T-GCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
26525419 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
26525465 TCTGATCAAGTGACAAAGTGATAA---GTA-C--T-G---CACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
26525501 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
26525547 TCTGATCAAGTGAAAAAGTGAT-A-----AG---T-GCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
26525583 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
* *
26525629 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGTTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
26525675 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
26525721 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
26525767 TCTGATC-AGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
26525792 ATCATACGTA
Statistics
Matches: 435, Mismatches: 16, Indels: 82
0.82 0.03 0.15
Matches are distributed among these distances:
36 119 0.27
37 4 0.01
39 8 0.02
40 8 0.02
42 8 0.02
43 8 0.02
44 12 0.03
45 9 0.02
46 259 0.60
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (46 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
Found at i:26525392 original size:82 final size:82
Alignment explanation
Indices: 26525255--26525746 Score: 804
Period size: 82 Copynumber: 5.9 Consensus size: 82
26525245 TTTGAGTACT
*
26525255 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
26525320 GATAAGTACTGCACTTA
66 GATAAGTACTGCACTTA
*
26525337 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
* *
26525402 GATAAGTGCTACACTTA
66 GATAAGTACTGCACTTA
26525419 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
26525484 GATAAGTACTGCACTTA
66 GATAAGTACTGCACTTA
*
26525501 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
* *
26525566 GATAAGTGCTACACTTA
66 GATAAGTACTGCACTTA
*
26525583 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
26525648 GATAAGTGGTAGCCTTAGTTACACTTA
66 GATAA---GTA--C-T-G---CACTTA
* *
26525675 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
26525740 GATAAGT
66 GATAAGT
26525747 GGTAGCCTTA
Statistics
Matches: 385, Mismatches: 15, Indels: 13
0.93 0.04 0.03
Matches are distributed among these distances:
82 304 0.79
85 2 0.01
87 1 0.00
88 1 0.00
89 2 0.01
92 75 0.19
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (82 bp):
TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
GATAAGTACTGCACTTA
Found at i:26528368 original size:27 final size:27
Alignment explanation
Indices: 26528338--26528390 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
26528328 TAGTGAAGAC
* *
26528338 GGGGTAGTCCACTGGGACATTAAACAT
1 GGGGTAGCCCACTAGGACATTAAACAT
26528365 GGGGTAGCCCACTAGGACATTAAACA
1 GGGGTAGCCCACTAGGACATTAAACA
26528391 CGGGTGGTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.28, T:0.19
Consensus pattern (27 bp):
GGGGTAGCCCACTAGGACATTAAACAT
Found at i:26532335 original size:42 final size:41
Alignment explanation
Indices: 26532269--26532354 Score: 122
Period size: 42 Copynumber: 2.1 Consensus size: 41
26532259 CCAAATTTTA
*
26532269 ATATTTTATATTATTTTTTATTATATATATTTGAATTATTT
1 ATATTTTATATTATTTTTTATTATATAAATTTGAATTATTT
26532310 ATATGTTTATAATT-TTTATTT-TTATATAAATTTGAATTATTT
1 ATAT-TTTAT-ATTATTT-TTTATTATATAAATTTGAATTATTT
26532352 ATA
1 ATA
26532355 AAATTATACT
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
41 4 0.10
42 31 0.76
43 6 0.15
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (41 bp):
ATATTTTATATTATTTTTTATTATATAAATTTGAATTATTT
Found at i:26532362 original size:42 final size:43
Alignment explanation
Indices: 26532274--26532371 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 43
26532264 TTTTAATATT
* * * ***
26532274 TTATATTATTTT-TTATTATATATATTTGAATTATTTATATGT
1 TTATAATATTTTATTTTTATATAAATTTGAATTATTTATAAAA
26532316 TTATAAT-TTTTATTTTTATATAAATTTGAATTATTTATAAAA
1 TTATAATATTTTATTTTTATATAAATTTGAATTATTTATAAAA
*
26532358 TTATACTATTTTAT
1 TTATAATATTTTAT
26532372 AATATATTAC
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
41 4 0.09
42 37 0.79
43 6 0.13
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.61
Consensus pattern (43 bp):
TTATAATATTTTATTTTTATATAAATTTGAATTATTTATAAAA
Found at i:26535118 original size:25 final size:25
Alignment explanation
Indices: 26535065--26535118 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
26535055 TGCATTAATT
* * * *
26535065 TTTTTAATATTTTTGTACAAATTAT
1 TTTTTAATATATTTATACAAACTAC
26535090 TTTTTAATATATTTATACAAACTAC
1 TTTTTAATATATTTATACAAACTAC
26535115 TTTT
1 TTTT
26535119 CTCAGTACTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.57
Consensus pattern (25 bp):
TTTTTAATATATTTATACAAACTAC
Found at i:26543717 original size:27 final size:27
Alignment explanation
Indices: 26543687--26543741 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
26543677 AATCCTTGGT
26543687 CTATAAGTATGTAGGCTATGGATGGCA
1 CTATAAGTATGTAGGCTATGGATGGCA
26543714 CTATAAGTATGTAGGCTATGGATGGCA
1 CTATAAGTATGTAGGCTATGGATGGCA
26543741 C
1 C
26543742 ACAATGTAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.29
Consensus pattern (27 bp):
CTATAAGTATGTAGGCTATGGATGGCA
Found at i:26544996 original size:14 final size:14
Alignment explanation
Indices: 26544977--26545004 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26544967 AGAAAAAGAG
26544977 TTATTATTATAAAA
1 TTATTATTATAAAA
26544991 TTATTATTATAAAA
1 TTATTATTATAAAA
26545005 GTTAAATACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TTATTATTATAAAA
Found at i:26547118 original size:24 final size:24
Alignment explanation
Indices: 26547091--26547137 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
26547081 ATTGAAATGG
26547091 ATTG-ATTTAGTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
26547115 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
26547138 GGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:26549220 original size:14 final size:14
Alignment explanation
Indices: 26549201--26549228 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26549191 TTGGGAATAG
26549201 GGGTAAAAAAATTC
1 GGGTAAAAAAATTC
26549215 GGGTAAAAAAATTC
1 GGGTAAAAAAATTC
26549229 AGATTTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.21, T:0.21
Consensus pattern (14 bp):
GGGTAAAAAAATTC
Found at i:26554884 original size:25 final size:25
Alignment explanation
Indices: 26554815--26554974 Score: 137
Period size: 25 Copynumber: 6.4 Consensus size: 25
26554805 ATGGATTTCT
*
26554815 GAAATGCCTTTGTGGTGAA-TCATCTA
1 GAAA-GCCTTTGTGGTGAATTC-TCTG
* * *
26554841 AAAAGCCTTTGT-ATAGAATACTCTG
1 GAAAGCCTTTGTGGT-GAATTCTCTG
* *
26554866 GAATGCCTTTGTGGTGAATTCTATG
1 GAAAGCCTTTGTGGTGAATTCTCTG
* ***
26554891 GAACGCCTTTGTGACAAATTCTCT-
1 GAAAGCCTTTGTGGTGAATTCTCTG
* *
26554915 GAAAGGCCTTTGTGGTGAATTTTTTG
1 GAAA-GCCTTTGTGGTGAATTCTCTG
*
26554941 GAAAGCCTTTGTGGTGAATTCTTTG
1 GAAAGCCTTTGTGGTGAATTCTCTG
*
26554966 GAAAACCTT
1 GAAAGCCTT
26554975 CGCGGCAAAC
Statistics
Matches: 107, Mismatches: 22, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
24 4 0.04
25 94 0.88
26 9 0.08
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (25 bp):
GAAAGCCTTTGTGGTGAATTCTCTG
Found at i:26554899 original size:50 final size:50
Alignment explanation
Indices: 26554812--26554953 Score: 164
Period size: 50 Copynumber: 2.8 Consensus size: 50
26554802 AACATGGATT
* *
26554812 TCTGAAATGCCTTTGTGGTGAATCATCTA--AAAAGCCTTTGT-ATAGAATAC
1 TCTGAAATGCCTTTGTGGTGAAT--TCTATGGAAAGCCTTTGTGACA-AATAC
* * *
26554862 TCTGGAATGCCTTTGTGGTGAATTCTATGGAACGCCTTTGTGACAAATTC
1 TCTGAAATGCCTTTGTGGTGAATTCTATGGAAAGCCTTTGTGACAAATAC
* * *
26554912 TCTGAAAGGCCTTTGTGGTGAATTTTTTGGAAAGCCTTTGTG
1 TCTGAAATGCCTTTGTGGTGAATTCTATGGAAAGCCTTTGTG
26554954 GTGAATTCTT
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
48 4 0.05
50 73 0.92
51 2 0.03
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (50 bp):
TCTGAAATGCCTTTGTGGTGAATTCTATGGAAAGCCTTTGTGACAAATAC
Found at i:26566771 original size:40 final size:40
Alignment explanation
Indices: 26566688--26566990 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
26566678 TTGAATGCTG
* * * * * *
26566688 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
26566728 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
26566768 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
26566808 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
26566848 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
26566888 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
26566928 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
26566967 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
26566991 TGAACGAGGA
Statistics
Matches: 241, Mismatches: 19, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 35 0.15
40 198 0.82
41 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:26587755 original size:40 final size:40
Alignment explanation
Indices: 26587672--26587974 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
26587662 TTGAATGCTG
* * * * * *
26587672 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
26587712 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
26587752 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
26587792 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
26587832 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
26587872 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
26587912 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
26587951 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
26587975 TGAACGAGGA
Statistics
Matches: 241, Mismatches: 19, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 35 0.15
40 198 0.82
41 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:26597276 original size:99 final size:99
Alignment explanation
Indices: 26597105--26597306 Score: 386
Period size: 99 Copynumber: 2.0 Consensus size: 99
26597095 TCATCACTTC
* *
26597105 ATTTTTGAGTGTCAGATCTGCCAACAAATGAAGGATTCTTTCCTCCATCTAGTCGACCTATTACA
1 ATTTTTGAGTGCCAGATCTGCCAACAAATGAAGGATTCTTTCCTCCATCTAGCCGACCTATTACA
26597170 ACCATTACCAATTTCGGAGTTGGTCTTTGAGGGT
66 ACCATTACCAATTTCGGAGTTGGTCTTTGAGGGT
26597204 ATTTTTGAGTGCCAGATCTGCCAACAAATGAAGGATTCTTTCCTCCATCTAGCCGACCTATTACA
1 ATTTTTGAGTGCCAGATCTGCCAACAAATGAAGGATTCTTTCCTCCATCTAGCCGACCTATTACA
26597269 ACCATTACCAATTTCGGAGTTGGTCTTTGAGGGT
66 ACCATTACCAATTTCGGAGTTGGTCTTTGAGGGT
26597303 ATTT
1 ATTT
26597307 CAATAGATTT
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
99 101 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (99 bp):
ATTTTTGAGTGCCAGATCTGCCAACAAATGAAGGATTCTTTCCTCCATCTAGCCGACCTATTACA
ACCATTACCAATTTCGGAGTTGGTCTTTGAGGGT
Found at i:26602422 original size:4 final size:4
Alignment explanation
Indices: 26602413--26602469 Score: 105
Period size: 4 Copynumber: 14.2 Consensus size: 4
26602403 AGTTAATCTA
*
26602413 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACGT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
26602461 ACAT ACAT A
1 ACAT ACAT A
26602470 TATAAATAGA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 51 1.00
ACGTcount: A:0.49, C:0.25, G:0.02, T:0.25
Consensus pattern (4 bp):
ACAT
Found at i:26609421 original size:15 final size:14
Alignment explanation
Indices: 26609394--26609427 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
26609384 TTAAAGGACT
26609394 AATTATGTTAATTA
1 AATTATGTTAATTA
*
26609408 AATTATGTTTAATTT
1 AATTATG-TTAATTA
26609423 AATTA
1 AATTA
26609428 ATTTAGGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (14 bp):
AATTATGTTAATTA
Found at i:26610505 original size:40 final size:39
Alignment explanation
Indices: 26610414--26610542 Score: 150
Period size: 39 Copynumber: 3.3 Consensus size: 39
26610404 TATTATAGAT
* * * *
26610414 TATAACGAGATCTAGCATTTATTGCAGATTCTCGGGAAA
1 TATAATGAGATTTAGCCTTTATTGCAGATTCTCGGGTAA
*
26610453 TATAATGAGATTTAGCCTTTGTTGCAGATTCTCGGGGTAA
1 TATAATGAGATTTAGCCTTTATTGCAGATTCTC-GGGTAA
* * * * *
26610493 TATAATGAGATTTATCCTCTATTGTAGATTCTCAGATAA
1 TATAATGAGATTTAGCCTTTATTGCAGATTCTCGGGTAA
*
26610532 TATAATAAGAT
1 TATAATGAGAT
26610543 CCAACCTTGT
Statistics
Matches: 77, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 43 0.56
40 34 0.44
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36
Consensus pattern (39 bp):
TATAATGAGATTTAGCCTTTATTGCAGATTCTCGGGTAA
Found at i:26612950 original size:13 final size:13
Alignment explanation
Indices: 26612930--26612987 Score: 71
Period size: 13 Copynumber: 4.5 Consensus size: 13
26612920 TTTAAATGTT
*
26612930 CATTTCATATATC
1 CATTTCATATAAC
*
26612943 CATGTCATATAAC
1 CATTTCATATAAC
* *
26612956 CATTTCGTAGAAC
1 CATTTCATATAAC
*
26612969 CATTTCATATATC
1 CATTTCATATAAC
26612982 CATTTC
1 CATTTC
26612988 CACCCGATGA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 37 1.00
ACGTcount: A:0.31, C:0.24, G:0.05, T:0.40
Consensus pattern (13 bp):
CATTTCATATAAC
Found at i:26617531 original size:29 final size:29
Alignment explanation
Indices: 26617498--26617559 Score: 115
Period size: 29 Copynumber: 2.1 Consensus size: 29
26617488 ACTGATATTT
*
26617498 ACATCTCACAATTTTCTCTCTCAAGACTA
1 ACATCTCACAACTTTCTCTCTCAAGACTA
26617527 ACATCTCACAACTTTCTCTCTCAAGACTA
1 ACATCTCACAACTTTCTCTCTCAAGACTA
26617556 ACAT
1 ACAT
26617560 AACACGTGGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.32, C:0.32, G:0.03, T:0.32
Consensus pattern (29 bp):
ACATCTCACAACTTTCTCTCTCAAGACTA
Found at i:26622980 original size:41 final size:41
Alignment explanation
Indices: 26622923--26623000 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
26622913 AGGAAAACAG
* *
26622923 ACATAGCATAAGTAGGTAATTATTGTAAAATAGATTTCTTA
1 ACATAGCATAAATAGGTAATGATTGTAAAATAGATTTCTTA
26622964 ACATAGCATAAATAGGTAATGATTGTAAAATAGATTT
1 ACATAGCATAAATAGGTAATGATTGTAAAATAGATTT
26623001 GATAAAAATC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.44, C:0.06, G:0.15, T:0.35
Consensus pattern (41 bp):
ACATAGCATAAATAGGTAATGATTGTAAAATAGATTTCTTA
Found at i:26628271 original size:51 final size:51
Alignment explanation
Indices: 26628208--26628308 Score: 150
Period size: 51 Copynumber: 2.0 Consensus size: 51
26628198 CACATGACAC
* * *
26628208 CTGTACTGTCTGACTTTGACTAGTAGTTGAGACACCTTGATTACAAGCCAA
1 CTGTACTGTCTGACTTTGACTAGAAGTCGAGACACCTTGATCACAAGCCAA
*
26628259 CTGTAC-GTTCTGACTTTGGCTAGAAGTCGAGACACCTTGATCACAAGCCA
1 CTGTACTG-TCTGACTTTGACTAGAAGTCGAGACACCTTGATCACAAGCCA
26628309 CCTGGACATC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
50 1 0.02
51 44 0.98
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.29
Consensus pattern (51 bp):
CTGTACTGTCTGACTTTGACTAGAAGTCGAGACACCTTGATCACAAGCCAA
Found at i:26628325 original size:51 final size:51
Alignment explanation
Indices: 26628219--26628327 Score: 137
Period size: 51 Copynumber: 2.1 Consensus size: 51
26628209 TGTACTGTCT
* * * * * * *
26628219 GACTTTGACTAGTAGTTGAGACACCTTGATTACAAGCCAACTGTACGTTCT
1 GACTTTGACTAGAAGTCGAGACACCTTGATCACAAGCCAACTGGACATCCA
* *
26628270 GACTTTGGCTAGAAGTCGAGACACCTTGATCACAAGCCACCTGGACATCCA
1 GACTTTGACTAGAAGTCGAGACACCTTGATCACAAGCCAACTGGACATCCA
26628321 GACTTTG
1 GACTTTG
26628328 TCTAAGAGTA
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.27
Consensus pattern (51 bp):
GACTTTGACTAGAAGTCGAGACACCTTGATCACAAGCCAACTGGACATCCA
Found at i:26632961 original size:12 final size:12
Alignment explanation
Indices: 26632946--26632993 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
26632936 AAATGAGTTA
26632946 ATAAACGAGCTT
1 ATAAACGAGCTT
**
26632958 ATAAACGAGCCA
1 ATAAACGAGCTT
26632970 ATAAACGAGCTT
1 ATAAACGAGCTT
*
26632982 TTAAACGAGCTT
1 ATAAACGAGCTT
26632994 GTTAGTGAAC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.23
Consensus pattern (12 bp):
ATAAACGAGCTT
Found at i:26632961 original size:24 final size:24
Alignment explanation
Indices: 26632945--26632991 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
26632935 TAAATGAGTT
26632945 AATAAACGAGCTTATAAACGAGCC
1 AATAAACGAGCTTATAAACGAGCC
*
26632969 AATAAACGAGCTTTTAAACGAGC
1 AATAAACGAGCTTATAAACGAGC
26632992 TTGTTAGTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.45, C:0.19, G:0.17, T:0.19
Consensus pattern (24 bp):
AATAAACGAGCTTATAAACGAGCC
Found at i:26636214 original size:21 final size:23
Alignment explanation
Indices: 26636172--26636214 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 23
26636162 TTTATTAATT
*
26636172 CATAATATTTTTATGTTATATTG
1 CATAATATTTCTATGTTATATTG
*
26636195 CATAAT-TTTCTA-GTTGTATT
1 CATAATATTTCTATGTTATATT
26636215 ATCATGATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.39
22 5 0.28
23 6 0.33
ACGTcount: A:0.28, C:0.07, G:0.09, T:0.56
Consensus pattern (23 bp):
CATAATATTTCTATGTTATATTG
Found at i:26639641 original size:40 final size:40
Alignment explanation
Indices: 26639595--26639682 Score: 133
Period size: 40 Copynumber: 2.2 Consensus size: 40
26639585 AAAGGAAACG
*
26639595 AAGTGC-AGAAAAAGGCACAAATGTGCAATCAGAGGCACCA
1 AAGTGCAAG-AAAAGGCACAAATGTGCAATCAAAGGCACCA
* *
26639635 AAGTGCAAGCAAAGGCACAAATGTGCAATCAAAGGCACCG
1 AAGTGCAAGAAAAGGCACAAATGTGCAATCAAAGGCACCA
26639675 AAGTGCAA
1 AAGTGCAA
26639683 ACCTGTACAA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
40 42 0.95
41 2 0.05
ACGTcount: A:0.44, C:0.20, G:0.25, T:0.10
Consensus pattern (40 bp):
AAGTGCAAGAAAAGGCACAAATGTGCAATCAAAGGCACCA
Found at i:26639680 original size:20 final size:20
Alignment explanation
Indices: 26639605--26639682 Score: 97
Period size: 20 Copynumber: 3.9 Consensus size: 20
26639595 AAGTGCAGAA
26639605 AAAGGCA-CAAATGTGCAATC
1 AAAGGCACCAAA-GTGCAATC
* *
26639625 AGAGGCACCAAAGTGCAAGC
1 AAAGGCACCAAAGTGCAATC
26639645 AAAGGCA-CAAATGTGCAATC
1 AAAGGCACCAAA-GTGCAATC
*
26639665 AAAGGCACCGAAGTGCAA
1 AAAGGCACCAAAGTGCAA
26639683 ACCTGTACAA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
19 4 0.08
20 39 0.78
21 7 0.14
ACGTcount: A:0.44, C:0.22, G:0.24, T:0.10
Consensus pattern (20 bp):
AAAGGCACCAAAGTGCAATC
Found at i:26641155 original size:26 final size:26
Alignment explanation
Indices: 26641126--26641194 Score: 102
Period size: 26 Copynumber: 2.7 Consensus size: 26
26641116 CATTCCGACC
* *
26641126 CACAGCTCGTATGAGCAGGCCCATTT
1 CACAGCTCGTGTGAGCAGACCCATTT
* *
26641152 CACAGCTCGTGTAAGCATACCCATTT
1 CACAGCTCGTGTGAGCAGACCCATTT
26641178 CACAGCTCGTGTGAGCA
1 CACAGCTCGTGTGAGCA
26641195 ACGATGTAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCAGACCCATTT
Done.