Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 88 of 221
Found at i:26642893 original size:15 final size:15
Alignment explanation
Indices: 26642875--26642910 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
26642865 CTCAGCCACG
26642875 TGTGACACACGGCCC
1 TGTGACACACGGCCC
*
26642890 TGTGACACACGGCCG
1 TGTGACACACGGCCC
26642905 TGTGAC
1 TGTGAC
26642911 CCCTGTAGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.17
Consensus pattern (15 bp):
TGTGACACACGGCCC
Found at i:26644153 original size:12 final size:12
Alignment explanation
Indices: 26644116--26644155 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
26644106 AACAACCAGC
26644116 AACGAAAAAGAA
1 AACGAAAAAGAA
*
26644128 AAAGAAAATAGAA
1 AACGAAAA-AGAA
*
26644141 AACGAAAACGAA
1 AACGAAAAAGAA
26644153 AAC
1 AAC
26644156 ATGGCAATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 13 0.54
13 11 0.46
ACGTcount: A:0.72, C:0.10, G:0.15, T:0.03
Consensus pattern (12 bp):
AACGAAAAAGAA
Found at i:26647962 original size:4 final size:4
Alignment explanation
Indices: 26647953--26647979 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
26647943 TACTAATATC
26647953 TAAT TAAT TAAT TAAT TAAT TAAT TAA
1 TAAT TAAT TAAT TAAT TAAT TAAT TAA
26647980 AATATTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
TAAT
Found at i:26652527 original size:45 final size:45
Alignment explanation
Indices: 26652451--26652638 Score: 229
Period size: 45 Copynumber: 4.2 Consensus size: 45
26652441 TATTACGTGT
* *
26652451 ACCGGGTACCATTGATTATAAAAGTGGTTGTTGTGTGCTGATTCC
1 ACCGGGTATCATTGATTATAAAGGTGGTTGTTGTGTGCTGATTCC
* *
26652496 ACCGGGTATCATTGATTTTAAAGGTGATTGTTGTGTGCTGATTCC
1 ACCGGGTATCATTGATTATAAAGGTGGTTGTTGTGTGCTGATTCC
* * *
26652541 ACCGGGTA-CTATTGATTATGAAGGTGGTTGCTATGTGCTGATTCC
1 ACCGGGTATC-ATTGATTATAAAGGTGGTTGTTGTGTGCTGATTCC
* * * * *
26652586 ACCGAGTATCATTGACTATAAGGGTGG-TGCTATGTGCTGA-TCC
1 ACCGGGTATCATTGATTATAAAGGTGGTTGTTGTGTGCTGATTCC
*
26652629 ACCGTGTATC
1 ACCGGGTATC
26652639 TGTTATTATT
Statistics
Matches: 127, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
43 12 0.09
44 14 0.11
45 100 0.79
46 1 0.01
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.35
Consensus pattern (45 bp):
ACCGGGTATCATTGATTATAAAGGTGGTTGTTGTGTGCTGATTCC
Found at i:26656062 original size:13 final size:13
Alignment explanation
Indices: 26656044--26656072 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
26656034 TTTAAAATTT
26656044 AAAATTATTATTA
1 AAAATTATTATTA
26656057 AAAATTATTATTA
1 AAAATTATTATTA
26656070 AAA
1 AAA
26656073 TACGGCTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
AAAATTATTATTA
Found at i:26656389 original size:26 final size:27
Alignment explanation
Indices: 26656335--26656401 Score: 118
Period size: 26 Copynumber: 2.5 Consensus size: 27
26656325 AAAAATAAAA
*
26656335 ATTTAACAAAATATTATAAATTTTTTT
1 ATTTACCAAAATATTATAAATTTTTTT
26656362 ATTTACCAAAATATTAT-AATTTTTTT
1 ATTTACCAAAATATTATAAATTTTTTT
26656388 ATTTACCAAAATAT
1 ATTTACCAAAATAT
26656402 ATCAAAAAAC
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
26 23 0.59
27 16 0.41
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.49
Consensus pattern (27 bp):
ATTTACCAAAATATTATAAATTTTTTT
Found at i:26657056 original size:18 final size:19
Alignment explanation
Indices: 26657027--26657082 Score: 69
Period size: 18 Copynumber: 3.0 Consensus size: 19
26657017 TCTAATTAAG
*
26657027 TAATAACGCTATTTTAATT
1 TAATAACACTATTTTAATT
* *
26657046 TAATAA-ACTATTCTCATT
1 TAATAACACTATTTTAATT
*
26657064 TAATAACTCTATTTTAATT
1 TAATAACACTATTTTAATT
26657083 AAAATAGAGT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
18 15 0.50
19 15 0.50
ACGTcount: A:0.38, C:0.12, G:0.02, T:0.48
Consensus pattern (19 bp):
TAATAACACTATTTTAATT
Found at i:26657084 original size:18 final size:18
Alignment explanation
Indices: 26657022--26657084 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
26657012 AGAATTCTAA
* *
26657022 TTAAGTAATAACGCTATT
1 TTAATTAATAACACTATT
26657040 TTAATTTAATAA-ACTATT
1 TTAA-TTAATAACACTATT
* * *
26657058 CTCATTTAATAACTCTATT
1 -TTAATTAATAACACTATT
26657077 TTAATTAA
1 TTAATTAA
26657085 AATAGAGTTA
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
18 22 0.63
19 13 0.37
ACGTcount: A:0.40, C:0.11, G:0.03, T:0.46
Consensus pattern (18 bp):
TTAATTAATAACACTATT
Found at i:26657139 original size:18 final size:19
Alignment explanation
Indices: 26657079--26657134 Score: 78
Period size: 18 Copynumber: 3.0 Consensus size: 19
26657069 ACTCTATTTT
26657079 AATTAAAATAGAGTTATTA
1 AATTAAAATAGAGTTATTA
* * *
26657098 AATGAGAATAG-TTTATTA
1 AATTAAAATAGAGTTATTA
26657116 AATTAAAATAGAGTTATTA
1 AATTAAAATAGAGTTATTA
26657135 CTTAATTAGA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
18 15 0.50
19 15 0.50
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (19 bp):
AATTAAAATAGAGTTATTA
Found at i:26657592 original size:27 final size:27
Alignment explanation
Indices: 26657560--26657611 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
26657550 CATTTTAGTC
* *
26657560 CTTTGGCACCATTGGTGCCGCCAATCT
1 CTTTGGCACCATTAGTGCCACCAATCT
*
26657587 CTTTGGCACCTTTAGTGCCACCAAT
1 CTTTGGCACCATTAGTGCCACCAAT
26657612 GTGATTGGCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.17, C:0.33, G:0.19, T:0.31
Consensus pattern (27 bp):
CTTTGGCACCATTAGTGCCACCAATCT
Found at i:26657619 original size:27 final size:27
Alignment explanation
Indices: 26657562--26657620 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 27
26657552 TTTTAGTCCT
* * *
26657562 TTGGCACCATTGGTGCCGCCAATCTCT
1 TTGGCACCATTAGTGCCACCAATCTCA
* * *
26657589 TTGGCACCTTTAGTGCCACCAATGTGA
1 TTGGCACCATTAGTGCCACCAATCTCA
26657616 TTGGC
1 TTGGC
26657621 CTGATCAGGC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.17, C:0.29, G:0.24, T:0.31
Consensus pattern (27 bp):
TTGGCACCATTAGTGCCACCAATCTCA
Found at i:26657695 original size:27 final size:27
Alignment explanation
Indices: 26657661--26657728 Score: 118
Period size: 27 Copynumber: 2.5 Consensus size: 27
26657651 GTTTTTTGGT
*
26657661 ATATTTTGATAAATAAAAAAAATTATA
1 ATATTTTGGTAAATAAAAAAAATTATA
*
26657688 ATATTTTGGTAAATAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAATTATA
26657715 ATATTTTGGTAAAT
1 ATATTTTGGTAAAT
26657729 TTTTATTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAAAAAATTATA
Found at i:26657921 original size:24 final size:23
Alignment explanation
Indices: 26657876--26657922 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
26657866 AATATGGTTA
*
26657876 ACTAAAACTCCATTTTCTTCTTC
1 ACTAAAACTCCATCTTCTTCTTC
*
26657899 ACTAAAAGCTTCATCTTCTTCTTC
1 ACTAAAA-CTCCATCTTCTTCTTC
26657923 TTCTTTACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.26, C:0.30, G:0.02, T:0.43
Consensus pattern (23 bp):
ACTAAAACTCCATCTTCTTCTTC
Found at i:26660619 original size:92 final size:91
Alignment explanation
Indices: 26660445--26660629 Score: 210
Period size: 92 Copynumber: 2.0 Consensus size: 91
26660435 GCATAAATGT
* ** * * * *
26660445 CATAATAAAATACATATTAATAGTTTAGATATTACATTAGACATTTTCAATATATATAATCATAT
1 CATAATAAAATAAATATTAATAGTTTAGATACAACATTAGACATTTGCAATATAAATAACCACAT
*
26660510 AAGATATTTTATTAAAGTATAGGTAC
66 AAGATATTTTATAAAAGTATAGGTAC
* * *
26660536 CATAATAAAAATAAATATTTATAGTTTAGGTACAACATTGGACATTTGCAAGTATAAAT-ACCAC
1 CATAAT-AAAATAAATATTAATAGTTTAGATACAACATTAGACATTTGCAA-TATAAATAACCAC
* * * *
26660600 ATTAGATCTTTTGTAAAAGTATATGTAC
64 ATAAGATATTTTATAAAAGTATAGGTAC
26660628 CA
1 CA
26660630 AATGTGGCAT
Statistics
Matches: 77, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
91 6 0.08
92 65 0.84
93 6 0.08
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.37
Consensus pattern (91 bp):
CATAATAAAATAAATATTAATAGTTTAGATACAACATTAGACATTTGCAATATAAATAACCACAT
AAGATATTTTATAAAAGTATAGGTAC
Found at i:26663201 original size:29 final size:29
Alignment explanation
Indices: 26663167--26663625 Score: 373
Period size: 29 Copynumber: 15.8 Consensus size: 29
26663157 TCATCGAAAA
*** * * *
26663167 ATGAAAAGGGATGGTTTTGTCCATCGATT
1 ATGAAAAGGGATGGTGACGACCATCAACT
* ** *
26663196 ATGAAAAGGGATAGTTTCGACTA-CAACT
1 ATGAAAAGGGATGGTGACGACCATCAACT
* * *
26663224 ATGAAAAGGGAAGATGACAACCATCAACT
1 ATGAAAAGGGATGGTGACGACCATCAACT
* *
26663253 ATGAAAAGGGATGGTGATGACCATCGACT
1 ATGAAAAGGGATGGTGACGACCATCAACT
* * ** ** * *
26663282 ATGAAAAGTGATAGTTTCGACTGTCGATT
1 ATGAAAAGGGATGGTGACGACCATCAACT
* *** *
26663311 ATGAAAAGGGATAGTTTTGACTATCAACT
1 ATGAAAAGGGATGGTGACGACCATCAACT
* * *
26663340 ATGAAAAAGGATGGTGATGACCATCAGCT
1 ATGAAAAGGGATGGTGACGACCATCAACT
26663369 ATGAAAAGGGATGGTGACGACCATCAACT
1 ATGAAAAGGGATGGTGACGACCATCAACT
* * *
26663398 ATGAAAAGGGATGATGACGACCATCGATT
1 ATGAAAAGGGATGGTGACGACCATCAACT
** * *
26663427 AATGAAAAGGGATGGTTTCAACCATCAAAT
1 -ATGAAAAGGGATGGTGACGACCATCAACT
* *
26663457 ATGGAAAGGGATGGTGACGGCCATCAACT
1 ATGAAAAGGGATGGTGACGACCATCAACT
* *
26663486 ATGAAAAGGGATGATGACGACCATCGACT
1 ATGAAAAGGGATGGTGACGACCATCAACT
* * ** * * *
26663515 ATGAAAAGAGATAGTTTCGACTATCGATT
1 ATGAAAAGGGATGGTGACGACCATCAACT
* ** ** *
26663544 ATGAAAAAGGATATTTTCGACTATCAACT
1 ATGAAAAGGGATGGTGACGACCATCAACT
26663573 ATGAAAAGGGATGGTGACGACCATCGAA-T
1 ATGAAAAGGGATGGTGACGACCATC-AACT
**
26663602 ATGAAAAGGGATGGTTTCGACCAT
1 ATGAAAAGGGATGGTGACGACCAT
26663626 TATTAGCATA
Statistics
Matches: 348, Mismatches: 79, Indels: 6
0.80 0.18 0.01
Matches are distributed among these distances:
28 19 0.05
29 304 0.87
30 25 0.07
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.24
Consensus pattern (29 bp):
ATGAAAAGGGATGGTGACGACCATCAACT
Found at i:26663620 original size:58 final size:58
Alignment explanation
Indices: 26663167--26663625 Score: 438
Period size: 58 Copynumber: 7.9 Consensus size: 58
26663157 TCATCGAAAA
*** * * *
26663167 ATGAAAAGGGATGGTTTTGTCCATCGATTATGAAAAGGGATAGTTTCGACTA-CAACT
1 ATGAAAAGGGATGGTGACGACCATCGATTATGAAAAGGGATGGTTTCGACCATCAACT
* * * * * * *
26663224 ATGAAAAGGGAAGATGACAACCATCAACTATGAAAAGGGATGGTGAT-GACCATCGACT
1 ATGAAAAGGGATGGTGACGACCATCGATTATGAAAAGGGATGGT-TTCGACCATCAACT
* * ** ** * * *
26663282 ATGAAAAGTGATAGTTTCGACTGTCGATTATGAAAAGGGATAGTTTTGACTATCAACT
1 ATGAAAAGGGATGGTGACGACCATCGATTATGAAAAGGGATGGTTTCGACCATCAACT
* * * **
26663340 ATGAAAAAGGATGGTGATGACCATC-AGCTATGAAAAGGGATGGTGACGACCATCAACT
1 ATGAAAAGGGATGGTGACGACCATCGA-TTATGAAAAGGGATGGTTTCGACCATCAACT
* * *
26663398 ATGAAAAGGGATGATGACGACCATCGATTAATGAAAAGGGATGGTTTCAACCATCAAAT
1 ATGAAAAGGGATGGTGACGACCATCGATT-ATGAAAAGGGATGGTTTCGACCATCAACT
* * * * * ** *
26663457 ATGGAAAGGGATGGTGACGGCCATCAACTATGAAAAGGGATGATGACGACCATCGACT
1 ATGAAAAGGGATGGTGACGACCATCGATTATGAAAAGGGATGGTTTCGACCATCAACT
* * ** * * ** *
26663515 ATGAAAAGAGATAGTTTCGACTATCGATTATGAAAAAGGATATTTTCGACTATCAACT
1 ATGAAAAGGGATGGTGACGACCATCGATTATGAAAAGGGATGGTTTCGACCATCAACT
*
26663573 ATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATGGTTTCGACCAT
1 ATGAAAAGGGATGGTGACGACCATCGATTATGAAAAGGGATGGTTTCGACCAT
26663626 TATTAGCATA
Statistics
Matches: 309, Mismatches: 87, Indels: 11
0.76 0.21 0.03
Matches are distributed among these distances:
57 40 0.13
58 219 0.71
59 50 0.16
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.24
Consensus pattern (58 bp):
ATGAAAAGGGATGGTGACGACCATCGATTATGAAAAGGGATGGTTTCGACCATCAACT
Found at i:26670031 original size:53 final size:53
Alignment explanation
Indices: 26669942--26670092 Score: 187
Period size: 53 Copynumber: 2.8 Consensus size: 53
26669932 AGATCGTAGC
* *
26669942 TGATGGGTTATGACATCATATGGACAGAATATCATATCGTGTAAGACCGTAAT
1 TGATGGGTTATGACATCATATGGAAAGAATACCATATCGTGTAAGACCGTAAT
* * * * **
26669995 TGATGGGTTATGGCATCATACGGAAAAAATACCATATCGTCTAAGACTATTAA-
1 TGATGGGTTATGACATCATATGGAAAGAATACCATATCGTGTAAGAC-CGTAAT
* * *
26670048 TGGTGGATTATGACATCATATGGAAAGAAGACCATATCGTGTAAG
1 TGATGGGTTATGACATCATATGGAAAGAATACCATATCGTGTAAG
26670093 GTCGTAACTG
Statistics
Matches: 82, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
53 79 0.96
54 3 0.04
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (53 bp):
TGATGGGTTATGACATCATATGGAAAGAATACCATATCGTGTAAGACCGTAAT
Found at i:26670118 original size:53 final size:52
Alignment explanation
Indices: 26669946--26670119 Score: 177
Period size: 53 Copynumber: 3.3 Consensus size: 52
26669936 CGTAGCTGAT
* * * *
26669946 GGGTTATGACATCATATGGACAGAATATCATATCGTGTAAGACCGTAATTGA
1 GGGTTATGACATCATATGGAAAGAATACCATATCGTGTAAGATCGTAATGGA
* * * * ** *
26669998 TGGGTTATGGCATCATACGGAAAAAATACCATATCGTCTAAGACTATTAATGGT
1 -GGGTTATGACATCATATGGAAAGAATACCATATCGTGTAAGA-TCGTAATGGA
* * *
26670052 GGATTATGACATCATATGGAAAGAAGACCATATCGTGTAAGGTCGTAACTGGA
1 GGGTTATGACATCATATGGAAAGAATACCATATCGTGTAAGATCGTAA-TGGA
* *
26670105 GGGTTGTGGCATCAT
1 GGGTTATGACATCAT
26670120 TTGGGGAAGT
Statistics
Matches: 95, Mismatches: 24, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
52 4 0.04
53 86 0.91
54 5 0.05
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (52 bp):
GGGTTATGACATCATATGGAAAGAATACCATATCGTGTAAGATCGTAATGGA
Found at i:26670340 original size:29 final size:29
Alignment explanation
Indices: 26670307--26670403 Score: 81
Period size: 29 Copynumber: 3.4 Consensus size: 29
26670297 TGTAAAGGAT
26670307 GCCTTTGTGGCAAAACTCTAAAAAGGTAA
1 GCCTTTGTGGCAAAACTCTAAAAAGGTAA
* * ** *
26670336 GCCTTTTTGGC-AACCTCTATTTAAGG-AT
1 GCCTTTGTGGCAAAACTCTA-AAAAGGTAA
* * **
26670364 GCCTTTGCGGCAAAACTTTGGAAAGGTAA
1 GCCTTTGTGGCAAAACTCTAAAAAGGTAA
*
26670393 GCCTTTATGGC
1 GCCTTTGTGGC
26670404 GAACCTCTTA
Statistics
Matches: 50, Mismatches: 15, Indels: 6
0.70 0.21 0.08
Matches are distributed among these distances:
28 21 0.42
29 29 0.58
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30
Consensus pattern (29 bp):
GCCTTTGTGGCAAAACTCTAAAAAGGTAA
Found at i:26670367 original size:28 final size:28
Alignment explanation
Indices: 26670300--26670380 Score: 83
Period size: 28 Copynumber: 2.9 Consensus size: 28
26670290 TACTAAATGT
26670300 AAAGGATGCCTTTGTGGCAAAACTCTAA
1 AAAGGATGCCTTTGTGGCAAAACTCTAA
* * * *
26670328 AAAGGTAAGCCTTTTTGGC-AACCTCTATT
1 AAAGG-ATGCCTTTGTGGCAAAACTCTA-A
* *
26670357 TAAGGATGCCTTTGCGGCAAAACT
1 AAAGGATGCCTTTGTGGCAAAACT
26670381 TTGGAAAGGT
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
28 22 0.54
29 19 0.46
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (28 bp):
AAAGGATGCCTTTGTGGCAAAACTCTAA
Found at i:26670376 original size:57 final size:58
Alignment explanation
Indices: 26670301--26670411 Score: 170
Period size: 57 Copynumber: 1.9 Consensus size: 58
26670291 ACTAAATGTA
* *
26670301 AAGGATGCCTTTGTGGCAAAACTCTAAAAAGGTAAGCCTTTTTGGC-AACCTCTATTT
1 AAGGATGCCTTTGCGGCAAAACTCTAAAAAGGTAAGCCTTTATGGCGAACCTCTATTT
* **
26670358 AAGGATGCCTTTGCGGCAAAACTTTGGAAAGGTAAGCCTTTATGGCGAACCTCT
1 AAGGATGCCTTTGCGGCAAAACTCTAAAAAGGTAAGCCTTTATGGCGAACCTCT
26670412 TAAGGAACAT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 41 0.85
58 7 0.15
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (58 bp):
AAGGATGCCTTTGCGGCAAAACTCTAAAAAGGTAAGCCTTTATGGCGAACCTCTATTT
Found at i:26670481 original size:29 final size:28
Alignment explanation
Indices: 26670441--26670514 Score: 78
Period size: 29 Copynumber: 2.6 Consensus size: 28
26670431 AAATCTCTGG
** *
26670441 AAGGAAATGCCTTTATGGTGATCTCTATCA
1 AAGGAAA-GCCTTTATGGAAATCTCCAT-A
* *
26670471 AAGGAAAGCCTCTATGGAAATCTCCGTA
1 AAGGAAAGCCTTTATGGAAATCTCCATA
26670499 AAGG-AAGCCTTTATGG
1 AAGGAAAGCCTTTATGG
26670515 CTATATCTAA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
27 11 0.29
28 5 0.13
29 15 0.39
30 7 0.18
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (28 bp):
AAGGAAAGCCTTTATGGAAATCTCCATA
Found at i:26674804 original size:21 final size:21
Alignment explanation
Indices: 26674780--26674819 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26674770 TTAAACTTCA
*
26674780 AAATTAGTTAAATTGTTGTTT
1 AAATTAGTTAAATTATTGTTT
**
26674801 AAATTTTTTAAATTATTGT
1 AAATTAGTTAAATTATTGT
26674820 ATATGAAATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.55
Consensus pattern (21 bp):
AAATTAGTTAAATTATTGTTT
Found at i:26677252 original size:26 final size:26
Alignment explanation
Indices: 26677222--26677304 Score: 78
Period size: 28 Copynumber: 3.1 Consensus size: 26
26677212 TGATTCAAAA
* *
26677222 CTATATATTAAGTCCGCACACTCAGTG
1 CTATATATCAACT-CGCACACTCAGTG
*
26677249 -TATATAATCAACTCGCACACTTAGTG
1 CTATAT-ATCAACTCGCACACTCAGTG
* *
26677275 CTATATAATCAAACTCACACACTTAGTG
1 CTATAT-ATC-AACTCGCACACTCAGTG
26677303 CT
1 CT
26677305 GTACAATTTA
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 17 0.35
27 14 0.29
28 18 0.37
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.30
Consensus pattern (26 bp):
CTATATATCAACTCGCACACTCAGTG
Found at i:26677297 original size:28 final size:28
Alignment explanation
Indices: 26677236--26677332 Score: 117
Period size: 28 Copynumber: 3.5 Consensus size: 28
26677226 ATATTAAGTC
*
26677236 CGCACACTCAGTG-TATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
26677262 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * * *
26677290 CACACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
26677319 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26677333 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
26 12 0.20
27 9 0.15
28 22 0.36
29 18 0.30
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:26685214 original size:27 final size:26
Alignment explanation
Indices: 26685197--26685266 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
26685187 ATATTAAGTC
26685197 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
26685224 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
26685252 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
26685267 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:26685260 original size:28 final size:28
Alignment explanation
Indices: 26685197--26685294 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
26685187 ATATTAAGTC
*
26685197 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
26685224 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
26685252 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
26685281 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26685295 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:26685760 original size:12 final size:12
Alignment explanation
Indices: 26685743--26685769 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
26685733 TGGGCATACT
26685743 TATGTATATATA
1 TATGTATATATA
26685755 TATGTATATATA
1 TATGTATATATA
26685767 TAT
1 TAT
26685770 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:26699675 original size:44 final size:44
Alignment explanation
Indices: 26699361--26700465 Score: 197
Period size: 44 Copynumber: 25.2 Consensus size: 44
26699351 GCGGAGAAGG
*
26699361 TTGAAGATTGTAGATCTTATCTCCCTAAACAGTAGTGGAGCAGA
1 TTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
* ** * * *
26699405 TCGAAGACAGCAAATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGA
1 TTGAAGATTGTAGATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGA
* ***** * * * * *
26699449 TTTAAGCCACCA-AGCATTGTCTCCCTGAGCAGTAGCGGAG-AAA
1 TTGAAGATTGTAGATC-TTATCTCCCTAAGCAGTAGTGGAGCAGA
* * * *
26699492 GTTAAAAATTGTAGATCTTATCTCCCTAAGAAATAGTGGAGCAGA
1 -TTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
* ** * * * *
26699537 TCGAAGACGGCAAATCTCATCTTTCC-AAG-A-TAGTGGGAAGCAGA
1 TTGAAGATTGTAGATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGA
* *** * * * * * * *
26699581 TTTAAGCCA-CCAAG-CCTTGTCTCCCTGAGCAGCAGCGGAGAAGG
1 TTGAAG--ATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
26699625 TTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 TTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
* ** * *
26699669 TCGAAGACGGTAAATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGA
1 TTGAAGATTGTAGATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGA
* *** * * * * * * *
26699713 TTTAAGCCA-CCAAG-CCTTGTCTCCCTGAGCAGCAGCGGAGAAGG
1 TTGAAG--ATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
*
26699757 TTGAATATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 TTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
* ** * * *
26699801 TCGAAGACAGCAAATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGA
1 TTGAAGATTGTAGATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGA
* *** * * * ** * * *
26699845 TTTAAGCCA-CCAAG-CCTTGTCTCCCTGAGCAACAGCGGAGAAGG
1 TTGAAG--ATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
26699889 TTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 TTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
** ** * *
26699933 TCAAAGACGGTAAATCTTATCTTCC-AAG-A-TAGTGGGAAGCAGA
1 TTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGT-GG-AGCAGA
* *** * * * * * ** *
26699976 TTTAAGCCA-CCAAG-CCTTGTCTCCCTGAGCAGCAG-CGAAAAGG
1 TTGAAG--ATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
*
26700019 TTGAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 TTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
* * ** * * *
26700063 TCGAATACAGCAAATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGA
1 TTGAAGATTGTAGATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGA
* *** * * * * * * ** *
26700107 TTTAAGCCA-CCAAG-CCTTGTCTCCCTGAGCAGCAGCGAAAAAGG
1 TTGAAG--ATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
* * *
26700151 TTAAAGATTATAGATCTTATCTCCCTAAACAGTAGTGGAGCAGA
1 TTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
* ** * * *
26700195 TCGAAGACAGCAAATCTTATCTTTCC-AAG-A-TAGTGGGCAGCAGA
1 TTGAAGATTGTAGATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGA
* *** * * * * * * *
26700239 TTTAAGCCA-CCAAG-CCTTGTCTCCCTGAGCAGCAGCGGAGAAGG
1 TTGAAG--ATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
26700283 TTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 TTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
** * *
26700327 TTGAAGACAGTAAATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGA
1 TTGAAGATTGTAGATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGA
* *** * * * * * * * *
26700371 TTTAAGCCA-CCAAG-CCTTGTCTCCTTGAGCTA-CAGCGGAGAAGG
1 TTGAAG--ATTGTAGATCTTATCTCCCTAAGC-AGTAGTGGAGCAGA
26700415 TTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 TTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
*
26700459 TCGAAGA
1 TTGAAGA
26700466 CAGCAAATCT
Statistics
Matches: 713, Mismatches: 267, Indels: 162
0.62 0.23 0.14
Matches are distributed among these distances:
41 5 0.01
42 39 0.05
43 104 0.15
44 489 0.69
45 52 0.07
46 24 0.03
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (44 bp):
TTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
Found at i:26700661 original size:658 final size:660
Alignment explanation
Indices: 26699235--26700632 Score: 2428
Period size: 658 Copynumber: 2.1 Consensus size: 660
26699225 ATCAGTGAAA
* * * *
26699235 ATTGTAGATCTTATCTCCCTAAACAGTAGTGGCGCAGATCGAAGACGGCGAATCTTATCTTTCCC
1 ATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCA
* * *
26699300 AGATAGTGGGAAGTAGATTTAAGCCACCAAGCCTTGTCTTCCTGAGCAGCAGCGGAGAAGGTTGA
66 AGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAAAAGGTTGA
*
26699365 AGATTGTAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAATCTTATCTTTC
131 AGATTATAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAATCTTATCTTTC
* *
26699430 CAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCATTGTCTCCCTGAGCAGTAGCGGAGAAAGTT
196 CAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCATTGTCTCCCTGAGCAGCAGCGGAAAAAGTT
* *
26699495 AAAAATTGTAGATCTTATCTCCCTAAGAAATAGTGGAGCAGATCGAAGACGGCAAATCTCATCTT
261 AAAAATTATAGATCTTATCTCCCTAAGAAATAGTGGAGCAGATCGAAGACAGCAAATCTCATCTT
26699560 TCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGG
326 TCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGG
*
26699625 TTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTAAATCTTATC
391 TTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGTAAATCTTATC
26699690 TTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAA
456 TTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAA
*
26699755 GGTTGAATATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCAAATCTTA
521 GGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCAAATCTTA
*
26699820 TCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAACAGCGGAG
586 TCTTTCCAAGATAGTGGGAAGCAGATTCAAGCCACCAAGCCTTGTCTCCCTGAGCAACAGCGGAG
*
26699885 AAGGTTGAAG
651 AAGGTTAAAG
* *
26699895 ATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGTAAATCTTATC-TTCCA
1 ATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCA
26699959 AGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGC-GAAAAGGTTGA
66 AGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAAAAGGTTGA
* *
26700023 AGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAATACAGCAAATCTTATCTTTC
131 AGATTATAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAATCTTATCTTTC
*
26700088 CAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGC-GAAAAAGGT
196 CAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCATTGTCTCCCTGAGCAGCAGCGGAAAAA-GT
* * *
26700152 TAAAGATTATAGATCTTATCTCCCTAA-ACAGTAGTGGAGCAGATCGAAGACAGCAAATCTTATC
260 TAAAAATTATAGATCTTATCTCCCTAAGA-AATAGTGGAGCAGATCGAAGACAGCAAATCTCATC
*
26700216 TTTCCAAGATAGTGGGCAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAA
324 TTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAA
*
26700281 GGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGTAAATCTTA
389 GGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGTAAATCTTA
*
26700346 TCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCTTGAGCTA-CAGCGGA
454 TCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGC-AGCAGCGGA
26700410 GAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCAAATC
518 GAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCAAATC
* *
26700475 TTATCTTTCCAAGATAGTGGGAAGCAGATTCAAGCCACCAAGCCTTGTTTCCCTGAGCAGCAGCG
583 TTATCTTTCCAAGATAGTGGGAAGCAGATTCAAGCCACCAAGCCTTGTCTCCCTGAGCAACAGCG
*
26700540 GAGTAGGTTAAAG
648 GAGAAGGTTAAAG
* * * *
26700553 ATTGTAGATCTTATCTCCCTAAGCAATAGTGGAGTAGATCGAAGACGACAAATCATATCTTTCCA
1 ATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCA
26700618 AGATAGTGGGAAGCA
66 AGATAGTGGGAAGCA
26700633 AATTAAAGTC
Statistics
Matches: 698, Mismatches: 36, Indels: 9
0.94 0.05 0.01
Matches are distributed among these distances:
657 6 0.01
658 562 0.81
659 76 0.11
660 54 0.08
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (660 bp):
ATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCA
AGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAAAAGGTTGA
AGATTATAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAATCTTATCTTTC
CAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCATTGTCTCCCTGAGCAGCAGCGGAAAAAGTT
AAAAATTATAGATCTTATCTCCCTAAGAAATAGTGGAGCAGATCGAAGACAGCAAATCTCATCTT
TCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGG
TTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGTAAATCTTATC
TTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAA
GGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCAAATCTTA
TCTTTCCAAGATAGTGGGAAGCAGATTCAAGCCACCAAGCCTTGTCTCCCTGAGCAACAGCGGAG
AAGGTTAAAG
Found at i:26700682 original size:44 final size:44
Alignment explanation
Indices: 26700629--26701070 Score: 229
Period size: 44 Copynumber: 10.2 Consensus size: 44
26700619 GATAGTGGGA
* *
26700629 AGCAAATTAAAGTCGACAATCCTATCTCCCTGAAGTTGCAGTGG
1 AGCAGATTAAAGTCGACAATCTTATCTCCCTGAAGTTGCAGTGG
* * * * *
26700673 AGCGGATTAAAATC-ATAGATCTTATCTCTCTGAAGTTGCAG-AG
1 AGCAGATTAAAGTCGACA-ATCTTATCTCCCTGAAGTTGCAGTGG
** * * *
26700716 AGCAGATTGCA-TC--TAGTCTTATCTTCCTGAAGTTGCAGTGG
1 AGCAGATTAAAGTCGACAATCTTATCTCCCTGAAGTTGCAGTGG
* * * *
26700757 AGCAGACT-AAGTAAGTA-AGTCTTATC-CTCCTGAAGTTACAGT-G
1 AGCAGATTAAAGT-CG-ACAATCTTATCTC-CCTGAAGTTGCAGTGG
* * *
26700800 AGGCAGAATGAAGAT-GGCAAATCTTATCTCCCTGAAGTTGCAGTGG
1 A-GCAGATTAAAG-TCGAC-AATCTTATCTCCCTGAAGTTGCAGTGG
* * * * *
26700846 AGCAGATTAAAGCCGACAATCCTGTTTCCCTAAAGTTGCAGTGG
1 AGCAGATTAAAGTCGACAATCTTATCTCCCTGAAGTTGCAGTGG
* * * * *
26700890 AGCGGATTAAAATC-ACAGATCTTATCTCTCTGAAGTTGTAG-AG
1 AGCAGATTAAAGTCGACA-ATCTTATCTCCCTGAAGTTGCAGTGG
* *** * * *
26700933 AACAGATCGCA-TC--TAGTCTTATCTCCTTGAAGTTGCAGTGG
1 AGCAGATTAAAGTCGACAATCTTATCTCCCTGAAGTTGCAGTGG
* * ** *
26700974 AGCAGACTAAGGAAG-CAAGTCTTATC-CTCCTAAAGTTGCAGT-G
1 AGCAGATTAAAGTCGACAA-TCTTATCTC-CCTGAAGTTGCAGTGG
* * *
26701017 AGGCAGACTGAAGATAG-CAAGTCTTATCTCCCTGAAGTTGCAGTGG
1 A-GCAGATTAAAG-TCGACAA-TCTTATCTCCCTGAAGTTGCAGTGG
*
26701063 AGTAGATT
1 AGCAGATT
26701071 GAACCACTAA
Statistics
Matches: 302, Mismatches: 70, Indels: 51
0.71 0.17 0.12
Matches are distributed among these distances:
40 40 0.13
41 18 0.06
42 4 0.01
43 27 0.09
44 140 0.46
45 66 0.22
46 7 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (44 bp):
AGCAGATTAAAGTCGACAATCTTATCTCCCTGAAGTTGCAGTGG
Found at i:26700683 original size:132 final size:132
Alignment explanation
Indices: 26699230--26700632 Score: 2364
Period size: 132 Copynumber: 10.6 Consensus size: 132
26699220 AACAGATCAG
* * * * *
26699230 TGAAAATTGTAGATCTTATCTCCCTAAACAGTAGTGGCGCAGATCGAAGACGGCGAATCTTATCT
1 TGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCAAATCTTATCT
* * *
26699295 TTCCCAGATAGTGGGAAGTAGATTTAAGCCACCAAGCCTTGTCTTCCTGAGCAGCAGCGGAGAAG
66 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAG
26699360 GT
131 GT
*
26699362 TGAAGATTGTAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAATCTTATCT
1 TGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCAAATCTTATCT
* * *
26699427 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCATTGTCTCCCTGAGCAGTAGCGGAGAAA
66 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAG
26699492 GT
131 GT
* * * * * *
26699494 TAAAAATTGTAGATCTTATCTCCCTAAGAAATAGTGGAGCAGATCGAAGACGGCAAATCTCATCT
1 TGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCAAATCTTATCT
26699559 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAG
66 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAG
26699624 GT
131 GT
* *
26699626 TGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTAAATCTTATCT
1 TGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCAAATCTTATCT
26699691 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAG
66 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAG
26699756 GT
131 GT
*
26699758 TGAATATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCAAATCTTATCT
1 TGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCAAATCTTATCT
*
26699823 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAACAGCGGAGAAG
66 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAG
26699888 GT
131 GT
* * *
26699890 TGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGTAAATCTTATC-
1 TGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCAAATCTTATCT
*
26699954 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGC-GAAAAG
66 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAG
26700018 GT
131 GT
* *
26700020 TGAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAATACAGCAAATCTTATCT
1 TGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCAAATCTTATCT
* *
26700085 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGAAAAAG
66 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAG
26700150 GT
131 GT
* * *
26700152 TAAAGATTATAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCGAAGACAGCAAATCTTATCT
1 TGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCAAATCTTATCT
*
26700217 TTCCAAGATAGTGGGCAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAG
66 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAG
26700282 GT
131 GT
* *
26700284 TGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACAGTAAATCTTATCT
1 TGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCAAATCTTATCT
*
26700349 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCTTGAGCTA-CAGCGGAGAA
66 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGC-AGCAGCGGAGAA
26700413 GGT
130 GGT
26700416 TGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCAAATCTTATCT
1 TGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCAAATCTTATCT
* * *
26700481 TTCCAAGATAGTGGGAAGCAGATTCAAGCCACCAAGCCTTGTTTCCCTGAGCAGCAGCGGAGTAG
66 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAG
26700546 GT
131 GT
* * * *
26700548 TAAAGATTGTAGATCTTATCTCCCTAAGCAATAGTGGAGTAGATCGAAGAC-GACAAATCATATC
1 TGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAG-CAAATCTTATC
26700612 TTTCCAAGATAGTGGGAAGCA
65 TTTCCAAGATAGTGGGAAGCA
26700633 AATTAAAGTC
Statistics
Matches: 1201, Mismatches: 65, Indels: 10
0.94 0.05 0.01
Matches are distributed among these distances:
130 66 0.05
131 117 0.10
132 1017 0.85
133 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (132 bp):
TGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCAAATCTTATCT
TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAG
GT
Found at i:26700792 original size:84 final size:87
Alignment explanation
Indices: 26700646--26700856 Score: 220
Period size: 84 Copynumber: 2.4 Consensus size: 87
26700636 TAAAGTCGAC
* * * *
26700646 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCATAGATCTTATCTCTCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAATCATAGATCTTATCTCTCTGAAGTTA
* *
26700711 CAGAGA-GCAGATTG-CAT-CT
66 CAGAGAGGCAGAATGACATGCA
* *
26700730 AGTCTTATCTTCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGT-A-AG-TCTTATC-CTCCTGAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA--AA-TCATAGATCTTATCTCT-CTGAA
* *
26700791 GTTACAGTGAGGCAGAATGAAGATGGCA
62 GTTACAGAGAGGCAGAATG-ACAT-GCA
*
26700819 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAA
26700857 GCCGACAATC
Statistics
Matches: 105, Mismatches: 13, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
83 2 0.02
84 52 0.50
85 9 0.09
86 3 0.03
87 4 0.04
89 35 0.33
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.28
Consensus pattern (87 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAATCATAGATCTTATCTCTCTGAAGTTA
CAGAGAGGCAGAATGACATGCA
Found at i:26700892 original size:217 final size:217
Alignment explanation
Indices: 26700629--26701070 Score: 715
Period size: 217 Copynumber: 2.0 Consensus size: 217
26700619 GATAGTGGGA
* * * *
26700629 AGCAAATTAAAGTCGACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCATAGATC
1 AGCAGATTAAAGCCGACAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAATCACAGATC
* *
26700694 TTATCTCTCTGAAGTTGCAGAGAGCAGATTGCATCTAGTCTTATCTTCC-TGAAGTTGCAGTGGA
66 TTATCTCTCTGAAGTTGCAGAGAACAGATCGCATCTAGTCTTATC-TCCTTGAAGTTGCAGTGGA
* * * *
26700758 GCAGACTAAGTAAGTAAGTCTTATCCTCCTGAAGTTACAGTGAGGCAGAATGAAGATGGCAAATC
130 GCAGACTAAGGAAGCAAGTCTTATCCTCCTAAAGTTACAGTGAGGCAGAATGAAGATAGCAAATC
26700823 TTATCTCCCTGAAGTTGCAGTGG
195 TTATCTCCCTGAAGTTGCAGTGG
* *
26700846 AGCAGATTAAAGCCGACAATCCTGTTTCCCTAAAGTTGCAGTGGAGCGGATTAAAATCACAGATC
1 AGCAGATTAAAGCCGACAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAATCACAGATC
*
26700911 TTATCTCTCTGAAGTTGTAGAGAACAGATCGCATCTAGTCTTATCTCCTTGAAGTTGCAGTGGAG
66 TTATCTCTCTGAAGTTGCAGAGAACAGATCGCATCTAGTCTTATCTCCTTGAAGTTGCAGTGGAG
* * *
26700976 CAGACTAAGGAAGCAAGTCTTATCCTCCTAAAGTTGCAGTGAGGCAGACTGAAGATAGCAAGTCT
131 CAGACTAAGGAAGCAAGTCTTATCCTCCTAAAGTTACAGTGAGGCAGAATGAAGATAGCAAATCT
26701041 TATCTCCCTGAAGTTGCAGTGG
196 TATCTCCCTGAAGTTGCAGTGG
*
26701063 AGTAGATT
1 AGCAGATT
26701071 GAACCACTAA
Statistics
Matches: 207, Mismatches: 17, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
216 3 0.01
217 204 0.99
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (217 bp):
AGCAGATTAAAGCCGACAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAATCACAGATC
TTATCTCTCTGAAGTTGCAGAGAACAGATCGCATCTAGTCTTATCTCCTTGAAGTTGCAGTGGAG
CAGACTAAGGAAGCAAGTCTTATCCTCCTAAAGTTACAGTGAGGCAGAATGAAGATAGCAAATCT
TATCTCCCTGAAGTTGCAGTGG
Found at i:26701290 original size:19 final size:19
Alignment explanation
Indices: 26701266--26701378 Score: 163
Period size: 19 Copynumber: 5.8 Consensus size: 19
26701256 AATTTTTTAG
26701266 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
26701285 GATATGCAATCCAAGATAT
1 GATATGCAATCTTAGATAT
26701304 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
26701325 GATATGCAATATTAGATAT
1 GATATGCAATCTTAGATAT
**
26701344 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
26701363 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
26701379 ATATATGATT
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
19 65 0.79
21 17 0.21
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:26701319 original size:40 final size:40
Alignment explanation
Indices: 26701267--26701373 Score: 173
Period size: 40 Copynumber: 2.7 Consensus size: 40
26701257 ATTTTTTAGG
26701267 ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
***
26701307 ATATGCAATCTTAGATATGATATGCAATATTAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
26701347 ATAT--AATCTTAGATATGATATGCAATC
1 ATATGCAATCTTAGATATGATATGCAATC
26701374 TTAGAATATA
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
38 22 0.35
40 41 0.65
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.36
Consensus pattern (40 bp):
ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
Found at i:26701361 original size:59 final size:56
Alignment explanation
Indices: 26701266--26701385 Score: 161
Period size: 59 Copynumber: 2.1 Consensus size: 56
26701256 AATTTTTTAG
* *
26701266 GATATGCAATCTTAGATATGATATGCAATCCAAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATATTAGATATGATATACAATCCAAGATATG--ATATGCAATCTTAGA-AT
* **
26701325 GATATGCAATATTAGATATGATATATAATCTTAGATATGATATGCAATCTTAGAAT
1 GATATGCAATATTAGATATGATATACAATCCAAGATATGATATGCAATCTTAGAAT
26701381 -ATATG
1 GATATG
26701386 ATTTTGTAAT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
55 5 0.09
56 2 0.04
57 15 0.27
59 34 0.61
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (56 bp):
GATATGCAATATTAGATATGATATACAATCCAAGATATGATATGCAATCTTAGAAT
Found at i:26701941 original size:16 final size:16
Alignment explanation
Indices: 26701900--26701941 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
26701890 TTGCAATTCA
26701900 ATTTAGTTTTTCTTTTC
1 ATTTA-TTTTTCTTTTC
* *
26701917 TTTTTTTTTTCTTTTC
1 ATTTATTTTTCTTTTC
26701933 ATTTATTTT
1 ATTTATTTT
26701942 ATTAATTAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 18 0.86
17 3 0.14
ACGTcount: A:0.10, C:0.10, G:0.02, T:0.79
Consensus pattern (16 bp):
ATTTATTTTTCTTTTC
Found at i:26702175 original size:25 final size:26
Alignment explanation
Indices: 26702142--26702191 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
26702132 TACATGTATA
26702142 TATATTTTTTAAAACGAATATTTTCC
1 TATATTTTTTAAAACGAATATTTTCC
* *
26702168 TATATTTTTT-TAATGAATATTTTC
1 TATATTTTTTAAAACGAATATTTTC
26702192 ATATTTATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.56
Consensus pattern (26 bp):
TATATTTTTTAAAACGAATATTTTCC
Found at i:26702968 original size:98 final size:98
Alignment explanation
Indices: 26702799--26702993 Score: 345
Period size: 98 Copynumber: 2.0 Consensus size: 98
26702789 AAAAATCATG
* *
26702799 AAGGAAATATTTCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
26702864 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
* *
26702897 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGGATCGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
*
26702962 AAATCTTGGATGAGTGGATGTTCTTTTAAAGT
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGT
26702994 TTTATTGTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 92 1.00
ACGTcount: A:0.28, C:0.10, G:0.25, T:0.37
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
Found at i:26706294 original size:19 final size:19
Alignment explanation
Indices: 26706270--26706306 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
26706260 ATAGATATAT
*
26706270 TTTTATAGTTTATAATTTC
1 TTTTATAGTTTAAAATTTC
*
26706289 TTTTATATTTTAAAATTT
1 TTTTATAGTTTAAAATTT
26706307 TATATAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (19 bp):
TTTTATAGTTTAAAATTTC
Found at i:26707604 original size:25 final size:28
Alignment explanation
Indices: 26707576--26707634 Score: 70
Period size: 26 Copynumber: 2.2 Consensus size: 28
26707566 TGTACATATA
*
26707576 AAATATATATAGATT-T-AAAA-TAATT
1 AAATATATATACATTATCAAAATTAATT
*
26707601 AAATAATATCTACATTATCAAAATTAATT
1 AAAT-ATATATACATTATCAAAATTAATT
26707630 AAATA
1 AAATA
26707635 AAAAAATATG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
25 4 0.14
26 9 0.32
27 1 0.04
28 5 0.18
29 9 0.32
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (28 bp):
AAATATATATACATTATCAAAATTAATT
Found at i:26707730 original size:27 final size:26
Alignment explanation
Indices: 26707690--26707746 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
26707680 AAAAAAATAT
*
26707690 ATATATGTACATAAAA-AATAAATATAC
1 ATATATATACATAAAATAAT-AAT-TAC
*
26707717 ATATATATAGATAAAATAATAATTAC
1 ATATATATACATAAAATAATAATTAC
26707743 ATAT
1 ATAT
26707747 GAAAATTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 7 0.26
27 17 0.63
28 3 0.11
ACGTcount: A:0.58, C:0.05, G:0.04, T:0.33
Consensus pattern (26 bp):
ATATATATACATAAAATAATAATTAC
Found at i:26709426 original size:44 final size:44
Alignment explanation
Indices: 26709315--26709603 Score: 229
Period size: 44 Copynumber: 6.7 Consensus size: 44
26709305 CTTTCTTGAG
* * * *
26709315 TCTGCTCCACTGCAATTTCAGGGAGATAAGA-C-CT-GATGTGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGGATTTAA
* * * * *
26709356 TCTACTCTACAGTAACTTCAGAGAGATAAGATCTGTGGATTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGGATTTAA
* * * *
26709400 TCTGCTCCACTGCAACTTTAGGGAGATAGGAT-TATTGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCT-GTGGATTTAA
* * ***
26709444 TCTGCTCCACTGCAACTTCAGGGATATAAGA-C--TAGATGCGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGGATTTAA
* ** *
26709485 TTTGCT-CTTTGCAACTTCAGAGAGATAAGATCTGT-GATTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGGA-TTTAA
* * * * *
26709528 TCCGCTCCACTGTAACTTCAGGGAGATAGGAT-TATTGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCT-GTGGATTTAA
*
26709572 TCTGCTCCACTGTAACTTCAGGGAGATAAGAT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGAT
26709604 TCGCCATCTT
Statistics
Matches: 191, Mismatches: 45, Indels: 21
0.74 0.18 0.08
Matches are distributed among these distances:
40 20 0.10
41 35 0.18
42 3 0.02
43 10 0.05
44 122 0.64
45 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.31
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGGATTTAA
Found at i:26709528 original size:128 final size:129
Alignment explanation
Indices: 26709315--26709602 Score: 429
Period size: 128 Copynumber: 2.2 Consensus size: 129
26709305 CTTTCTTGAG
* * *
26709315 TCTGCTCCACTGCAATTTCAGGGAGATAAGACCTGATGTGATCTACTCTACAGTAACTTCAGAGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACCTGATGCGATCTACTCTACAGCAACTTCAGAGA
* *
26709380 GATAAGATCTGTGGATTTAATCTGCTCCACTGCAACTTTAGGGAGATAGGATTATTGGCTTTAA
66 GATAAGATCTGTGGATTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAA
* * * **
26709444 TCTGCTCCACTGCAACTTCAGGGATATAAGA-CTAGATGCGATTTGCTCT-TTGCAACTTCAGAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACCT-GATGCGATCTACTCTACAGCAACTTCAGAG
*
26709507 AGATAAGATCTGT-GATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTATTGGCTTTA
65 AGATAAGATCTGTGGA-TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTA
26709571 A
129 A
*
26709572 TCTGCTCCACTGTAACTTCAGGGAGATAAGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA
26709603 TTCGCCATCT
Statistics
Matches: 144, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
127 2 0.01
128 101 0.70
129 41 0.28
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (129 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACCTGATGCGATCTACTCTACAGCAACTTCAGAGA
GATAAGATCTGTGGATTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAA
Found at i:26710097 original size:267 final size:266
Alignment explanation
Indices: 26709619--26710423 Score: 1263
Period size: 267 Copynumber: 3.0 Consensus size: 266
26709609 ATCTTCAGTC
* *
26709619 TTTTTAATTGAAATGTTGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTACACCG
1 TTTTTAATTGAAATGTTGAGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTACACTG
* * * ** *
26709684 CCAAGGAAGTAAGATTCGCCGTTGCGG-CTTCAATCTTTTTCACTGTAATGCCAAAGAGATAGGA
66 CCAGGGGAGTAAGATTCG-CATTGCGGCCTT-AATCTACTCCACTGTAATGCCAAAGAGATAGGA
*
26709748 TTCGCTGCCCACAGCTTCAATCCA-CTCCACTTCAGCTAATCCAAGCCTTAACGCCAAGGAGATA
129 TTCGCTGCCCACAGCTTCAAT-CAGCTCCACTTCAGCTAATCCAAGCCTTAACGCCAGGGAGATA
* * *
26709812 AGATTCGCTGTCGTGGCTTAAATCTGCTCCGCTACAACGCCAGGGAAGTAAGATTCGCCGTTGCG
193 AGATTCACCGTCGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGAAGTAAGATTCGCCGTTGCG
26709877 GCTTCAATA
258 GCTTCAATA
* * *
26709886 TTTTTAATTGTAATGTTGAGGAAACAAGATTCACCGTTGTAGCTTCAATCTATTCCACTACACTG
1 TTTTTAATTGAAATGTTGAGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTACACTG
*
26709951 CCAGGGGAGTAAGATTCGTCATTGAGGCCTTAATCTACTCCACTGTAATGCCAAAGAGATAGGAT
66 CCAGGGGAGTAAGATTCG-CATTGCGGCCTTAATCTACTCCACTGTAATGCCAAAGAGATAGGAT
* * *
26710016 TCGCTACCCATAGCTTCAATCAGCTCCACTTCAGCTAATCCAAGCCTTAACGCCGGGGAGATAAG
130 TCGCTGCCCACAGCTTCAATCAGCTCCACTTCAGCTAATCCAAGCCTTAACGCCAGGGAGATAAG
* * *
26710081 ATTCACCGTTGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGAAGTAAGATTCTCCGTTGCGGT
195 ATTCACCGTCGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGAAGTAAGATTCGCCGTTGCGGC
*
26710146 TTCAATC
260 TTCAATA
* *
26710153 TTTTTAATTGCAATGTTGAGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACTG
1 TTTTTAATTGAAATGTTGAGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTACACTG
* *
26710218 CCAGGGGAGTAAAATTCGCAGTTGCGGCCTTAATCTGCTCCACTGTAATGCCAAAGAGATAGGAT
66 CCAGGGGAGTAAGATTCGCA-TTGCGGCCTTAATCTACTCCACTGTAATGCCAAAGAGATAGGAT
* *
26710283 TCGCTGCCCACAGCTTCAATCCGCTCCACTTCAGCTAATCCAAGCCTTAATGCCAGGGAGATAAG
130 TCGCTGCCCACAGCTTCAATCAGCTCCACTTCAGCTAATCCAAGCCTTAACGCCAGGGAGATAAG
* * *
26710348 ATTCACCGTCGTGGCTTCAATCTGCTCCGCTATAACGCCAGGGAAATAAGATTCGCCGTTGTGGC
195 ATTCACCGTCGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGAAGTAAGATTCGCCGTTGCGGC
26710413 TTCAATA
260 TTCAATA
26710420 TTTT
1 TTTT
26710424 CCATTGCTAC
Statistics
Matches: 492, Mismatches: 43, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
266 4 0.01
267 485 0.99
268 3 0.01
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (266 bp):
TTTTTAATTGAAATGTTGAGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTACACTG
CCAGGGGAGTAAGATTCGCATTGCGGCCTTAATCTACTCCACTGTAATGCCAAAGAGATAGGATT
CGCTGCCCACAGCTTCAATCAGCTCCACTTCAGCTAATCCAAGCCTTAACGCCAGGGAGATAAGA
TTCACCGTCGTGGCTTCAATCTGCTCCGCTACAACGCCAGGGAAGTAAGATTCGCCGTTGCGGCT
TCAATA
Found at i:26710602 original size:88 final size:88
Alignment explanation
Indices: 26710453--26710624 Score: 263
Period size: 88 Copynumber: 2.0 Consensus size: 88
26710443 ATAAGACTGA
* * *
26710453 TATCTTCGACCTACTTCACTGCCAATATAGGAAGGCAAGATCTGCTATTTTCAAACTACTCCACT
1 TATCTGCGACCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATTTTCAAACTACTCCACT
* *
26710518 GCTGCTCTGGGAGACAAGGCTGG
66 GCTACTCAGGGAGACAAGGCTGG
* * *
26710541 TATCTGCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATTTTTAACCTACTCCACT
1 TATCTGCGACCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATTTTCAAACTACTCCACT
*
26710606 GCTATTCAGGGAGACAAGG
66 GCTACTCAGGGAGACAAGG
26710625 TTGGAGTTTC
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 75 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (88 bp):
TATCTGCGACCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATTTTCAAACTACTCCACT
GCTACTCAGGGAGACAAGGCTGG
Found at i:26710606 original size:45 final size:45
Alignment explanation
Indices: 26710461--26710607 Score: 127
Period size: 45 Copynumber: 3.3 Consensus size: 45
26710451 GATATCTTCG
* * *
26710461 ACCTACTTCACTGCCAATATAGGAAGGCAAGATCTGCTATTTTCA
1 ACCTACTCCACTGCCAATACAGGAAGACAAGATCTGCTATTTTCA
* *** * * * * * * *
26710506 AACTACTCCACTGCTGCT-CTGGGAGACAAG-GCTGGTATCTGCG
1 ACCTACTCCACTGCCAATACAGGAAGACAAGATCTGCTATTTTCA
* * *
26710549 ATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATTTTTA
1 ACCTACTCCACTGCCAATACAGGAAGACAAGATCTGCTATTTTCA
26710594 ACCTACTCCACTGC
1 ACCTACTCCACTGC
26710608 TATTCAGGGA
Statistics
Matches: 71, Mismatches: 29, Indels: 4
0.68 0.28 0.04
Matches are distributed among these distances:
43 21 0.30
44 18 0.25
45 32 0.45
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (45 bp):
ACCTACTCCACTGCCAATACAGGAAGACAAGATCTGCTATTTTCA
Found at i:26710621 original size:44 final size:44
Alignment explanation
Indices: 26710488--26710623 Score: 121
Period size: 44 Copynumber: 3.1 Consensus size: 44
26710478 TATAGGAAGG
** *
26710488 CAAGATCTGCTATTTTCAAACTACTCCACTGCTGCTCTGGGAGA
1 CAAGATCTGCTATTTTCAAACTACTCCACTGCTATTCAGGGAGA
* * * * * * * * * *
26710532 CAAG-GCTGGTATCTGCGATCTACTTCACTGCCAATACAGGAAGA
1 CAAGATCTGCTATTTTCAAACTACTCCACTG-CTATTCAGGGAGA
* *
26710576 CAAGATCTGCTATTTTTAACCTACTCCACTGCTATTCAGGGAGA
1 CAAGATCTGCTATTTTCAAACTACTCCACTGCTATTCAGGGAGA
26710620 CAAG
1 CAAG
26710624 GTTGGAGTTT
Statistics
Matches: 66, Mismatches: 24, Indels: 4
0.70 0.26 0.04
Matches are distributed among these distances:
43 19 0.29
44 29 0.44
45 18 0.27
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (44 bp):
CAAGATCTGCTATTTTCAAACTACTCCACTGCTATTCAGGGAGA
Found at i:26711627 original size:35 final size:35
Alignment explanation
Indices: 26711581--26711651 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
26711571 AAACTAGGCG
26711581 CCCCAGATATCGCAGCTTGAACTTCTCTGTACAAA
1 CCCCAGATATCGCAGCTTGAACTTCTCTGTACAAA
26711616 CCCCAGATATCGCAGCTTGAACTTCTCTGTACAAA
1 CCCCAGATATCGCAGCTTGAACTTCTCTGTACAAA
26711651 C
1 C
26711652 TTCCTAAAGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.25
Consensus pattern (35 bp):
CCCCAGATATCGCAGCTTGAACTTCTCTGTACAAA
Found at i:26711928 original size:6 final size:6
Alignment explanation
Indices: 26711919--26711963 Score: 53
Period size: 6 Copynumber: 8.2 Consensus size: 6
26711909 CTCCTTTTCC
*
26711919 TCTTTT TC--TT TCTTTT TC-TTT T-TTTT TCTTTT TCTTTT CCTTTT
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT
26711963 T
1 T
26711964 TCCATCATCA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
4 4 0.12
5 8 0.24
6 21 0.64
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (6 bp):
TCTTTT
Found at i:26711940 original size:16 final size:16
Alignment explanation
Indices: 26711919--26711961 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
26711909 CTCCTTTTCC
26711919 TCTTTTTCTTTCTTTT
1 TCTTTTTCTTTCTTTT
*
26711935 TCTTTTTTTTTCTTTT
1 TCTTTTTCTTTCTTTT
*
26711951 TCTTTTCCTTT
1 TCTTTTTCTTT
26711962 TTTCCATCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (16 bp):
TCTTTTTCTTTCTTTT
Found at i:26711950 original size:10 final size:10
Alignment explanation
Indices: 26711921--26711964 Score: 61
Period size: 10 Copynumber: 4.2 Consensus size: 10
26711911 CCTTTTCCTC
*
26711921 TTTTTCTTTC
1 TTTTTCTTTT
26711931 TTTTTCTTTT
1 TTTTTCTTTT
26711941 TTTTTCTTTT
1 TTTTTCTTTT
26711951 TCTTTTCCTTTT
1 T-TTTT-CTTTT
26711963 TT
1 TT
26711965 CCATCATCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
10 20 0.65
11 5 0.16
12 6 0.19
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:26712829 original size:25 final size:25
Alignment explanation
Indices: 26712776--26712841 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
26712766 AAGAAGATCC
* *
26712776 AAAAGAATGAAAGAATAATTATTCG
1 AAAAGAATGAAAGAATAATTACTCA
*
26712801 AAAAGAATGAAAGAAT-ATTGGCTCA
1 AAAAGAATGAAAGAATAATT-ACTCA
26712826 AAAATGAATGCAAAGA
1 AAAA-GAATG-AAAGA
26712842 TGTATTTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 3 0.09
25 22 0.63
26 5 0.14
27 5 0.14
ACGTcount: A:0.56, C:0.06, G:0.18, T:0.20
Consensus pattern (25 bp):
AAAAGAATGAAAGAATAATTACTCA
Found at i:26722194 original size:25 final size:25
Alignment explanation
Indices: 26722158--26722244 Score: 99
Period size: 25 Copynumber: 3.6 Consensus size: 25
26722148 CACACAAGTA
*
26722158 CATA-AACAGGAAGCTC-TTGTGAGC
1 CATATAACGGGAAGCTCATT-TGAGC
26722182 CATATAACGGGAAGCTCATTTGAGC
1 CATATAACGGGAAGCTCATTTGAGC
* **
26722207 CATGTAACGGGAAGCTCATACGAGC
1 CATATAACGGGAAGCTCATTTGAGC
*
26722232 CA-ATAACAGGAAG
1 CATATAACGGGAAG
26722245 GTTCAAGCGA
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
24 13 0.24
25 40 0.73
26 2 0.04
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.18
Consensus pattern (25 bp):
CATATAACGGGAAGCTCATTTGAGC
Found at i:26726232 original size:51 final size:51
Alignment explanation
Indices: 26726045--26726232 Score: 191
Period size: 51 Copynumber: 3.7 Consensus size: 51
26726035 CATGAGAACT
* * * * * *
26726045 CATGTGTAGTACTATGTGTAGGCTACAATGAGTA-TAAGATAGTTATGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACT-GGATAGCTATGGTCA
* * *
26726096 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAGCTTTCGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAGCTATGGTCA
** * * * *
26726147 TGTGTGTAGTATTATGTGCAGGCTACTACGTGTACTGGAT-GGTAGTGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAGCTA-TGGTCA
* *
26726198 CATGTTTAGTACTAAGTGTAGGCTACTATGTGTAC
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTAC
26726233 CAGATAGCAT
Statistics
Matches: 110, Mismatches: 25, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
50 2 0.02
51 108 0.98
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (51 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAGCTATGGTCA
Found at i:26734704 original size:6 final size:6
Alignment explanation
Indices: 26734693--26734724 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
26734683 ATATCACATA
26734693 TCTCTT TCTCTT TCTCTT TCTCTT TCTCTT TC
1 TCTCTT TCTCTT TCTCTT TCTCTT TCTCTT TC
26734725 ACTCATTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (6 bp):
TCTCTT
Found at i:26739021 original size:15 final size:16
Alignment explanation
Indices: 26739001--26739044 Score: 63
Period size: 15 Copynumber: 2.8 Consensus size: 16
26738991 AATAAAAAGG
*
26739001 ATGAAAAGGTTTTC-A
1 ATGAAAAGGTTATCGA
26739016 ATGAAAAGGTTATCGA
1 ATGAAAAGGTTATCGA
*
26739032 TTGAAAAGGTTAT
1 ATGAAAAGGTTAT
26739045 TGATTAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
15 13 0.50
16 13 0.50
ACGTcount: A:0.41, C:0.05, G:0.23, T:0.32
Consensus pattern (16 bp):
ATGAAAAGGTTATCGA
Found at i:26739038 original size:16 final size:16
Alignment explanation
Indices: 26739002--26739060 Score: 68
Period size: 16 Copynumber: 3.8 Consensus size: 16
26738992 ATAAAAAGGA
* *
26739002 TGAAAAGGTTTTC-AA
1 TGAAAAGGTTATCGAT
26739017 TGAAAAGGTTATCGAT
1 TGAAAAGGTTATCGAT
*
26739033 TGAAAAGGTTATTGAT
1 TGAAAAGGTTATCGAT
26739049 T-AGAAAGGTTAT
1 TGA-AAAGGTTAT
26739061 ACTAATAATA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
15 13 0.33
16 26 0.67
ACGTcount: A:0.39, C:0.03, G:0.24, T:0.34
Consensus pattern (16 bp):
TGAAAAGGTTATCGAT
Found at i:26753919 original size:61 final size:61
Alignment explanation
Indices: 26753808--26753934 Score: 150
Period size: 61 Copynumber: 2.1 Consensus size: 61
26753798 CCTAAATATA
* * * * *
26753808 AAAAAATTCAATAAATTTAGCCCTCAATATTTTAAAAAAATTTCATTTTAGTTCTAATTGT
1 AAAAAATTCAATAAATTTAACCCTCAATATTTTAAAAAAATTTCAATTTAGTCCTAACTCT
* * *
26753869 AAAAAATTTAATAAATTTAACTCTCAATA-TTT-ATAAAATCTATCAATTTAGTCCTAACTCT
1 AAAAAATTCAATAAATTTAACCCTCAATATTTTAAAAAAAT-T-TCAATTTAGTCCTAACTCT
26753930 AAAAA
1 AAAAA
26753935 TTAAAAATAT
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
59 6 0.11
60 4 0.07
61 46 0.82
ACGTcount: A:0.46, C:0.13, G:0.03, T:0.39
Consensus pattern (61 bp):
AAAAAATTCAATAAATTTAACCCTCAATATTTTAAAAAAATTTCAATTTAGTCCTAACTCT
Found at i:26754945 original size:211 final size:211
Alignment explanation
Indices: 26754581--26754994 Score: 801
Period size: 211 Copynumber: 2.0 Consensus size: 211
26754571 AAAATAGAAC
* *
26754581 AAAAAGAATAGTTGTGTAAACATTTTTGTAGTTTAGCCATAAAAAATAATTTTTATCATGTCCAC
1 AAAAAGAATAGTTGTGTAAACATTTTTGTAGCTTAGCCATAAAAAATAATTTTTAACATGTCCAC
26754646 ATCATCATTTAACAGAAAATTTAACAGAAAGACTAATTTGCATGTTTAAAAATATATAAGGGCTA
66 ATCATCATTTAACAGAAAATTTAACAGAAAGACTAATTTGCATGTTTAAAAATATATAAGGGCTA
26754711 ATTTGTCCATTTTTTTTCAATTGCGGGACCAAACTGCAATCCACCCCTAAGTAAGGGACTTCCCT
131 ATTTGTCCATTTTTTTTCAATTGCGGGACCAAACTGCAATCCACCCCTAAGTAAGGGACTTCCCT
26754776 GGTACTTTAAATTCAA
196 GGTACTTTAAATTCAA
26754792 AAAAAGAATAGTTGTGTAAACATTTTTGTAGCTTAGCCATAAAAAATAATTTTTAACATGTCCAC
1 AAAAAGAATAGTTGTGTAAACATTTTTGTAGCTTAGCCATAAAAAATAATTTTTAACATGTCCAC
26754857 ATCATCATTTAACAGAAAATTTAACAGAAAGACTAATTTGCATGTTTAAAAATATATAAGGGCTA
66 ATCATCATTTAACAGAAAATTTAACAGAAAGACTAATTTGCATGTTTAAAAATATATAAGGGCTA
*
26754922 ATTTGTCCATTTTTTTTCAATTGCGGGACCAAACTGCAATCCACCCCTAAGTAAGGGGCTTCCCT
131 ATTTGTCCATTTTTTTTCAATTGCGGGACCAAACTGCAATCCACCCCTAAGTAAGGGACTTCCCT
26754987 GGTACTTT
196 GGTACTTT
26754995 TACCAACCAA
Statistics
Matches: 200, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
211 200 1.00
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.33
Consensus pattern (211 bp):
AAAAAGAATAGTTGTGTAAACATTTTTGTAGCTTAGCCATAAAAAATAATTTTTAACATGTCCAC
ATCATCATTTAACAGAAAATTTAACAGAAAGACTAATTTGCATGTTTAAAAATATATAAGGGCTA
ATTTGTCCATTTTTTTTCAATTGCGGGACCAAACTGCAATCCACCCCTAAGTAAGGGACTTCCCT
GGTACTTTAAATTCAA
Found at i:26758149 original size:5 final size:5
Alignment explanation
Indices: 26758139--26758170 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
26758129 TAATGTATTC
26758139 CATAT CATAT CATAT CATAT CATAT CATAT CA
1 CATAT CATAT CATAT CATAT CATAT CATAT CA
26758171 CATATATTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.41, C:0.22, G:0.00, T:0.38
Consensus pattern (5 bp):
CATAT
Found at i:26759851 original size:24 final size:23
Alignment explanation
Indices: 26759787--26759851 Score: 55
Period size: 24 Copynumber: 2.8 Consensus size: 23
26759777 CAATTAAAAT
26759787 ATATTA-AAATTATTTTATAATG
1 ATATTATAAATTATTTTATAATG
* *
26759809 -T-TGTATAAATTGAACTTTATTAGTG
1 ATAT-TATAAATT--ATTTTA-TAATG
26759834 ATATTATAAATTATTTTA
1 ATATTATAAATTATTTTA
26759852 ATCATTATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 12
0.69 0.06 0.25
Matches are distributed among these distances:
20 1 0.03
21 3 0.09
22 5 0.15
24 10 0.30
25 4 0.12
26 9 0.27
27 1 0.03
ACGTcount: A:0.40, C:0.02, G:0.08, T:0.51
Consensus pattern (23 bp):
ATATTATAAATTATTTTATAATG
Found at i:26760685 original size:26 final size:24
Alignment explanation
Indices: 26760654--26760725 Score: 72
Period size: 26 Copynumber: 2.8 Consensus size: 24
26760644 TTCTCATTCT
*
26760654 AATTTTACCCCAGTAAATTTTTTGAC
1 AATTTTACCCC-GTAAA-ATTTTGAC
*
26760680 AATTTTACCTCCGATAAAATTTTGAT
1 AATTTTACC-CCG-TAAAATTTTGAC
*
26760706 GATTTTACCCCGGTAAAATT
1 AATTTTACCCC-GTAAAATT
26760726 CAATATGTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
25 9 0.22
26 25 0.62
27 6 0.15
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.40
Consensus pattern (24 bp):
AATTTTACCCCGTAAAATTTTGAC
Found at i:26790828 original size:17 final size:18
Alignment explanation
Indices: 26790806--26790841 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
26790796 CCTCCAGCCA
26790806 ATGTTT-ATAGATGAAAC
1 ATGTTTGATAGATGAAAC
*
26790823 ATGTTTGATAGATTAAAC
1 ATGTTTGATAGATGAAAC
26790841 A
1 A
26790842 ATAAGAACGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.42, C:0.06, G:0.17, T:0.36
Consensus pattern (18 bp):
ATGTTTGATAGATGAAAC
Found at i:26794300 original size:20 final size:20
Alignment explanation
Indices: 26794266--26794372 Score: 90
Period size: 20 Copynumber: 5.3 Consensus size: 20
26794256 GCATCATAGA
26794266 TGCATAACAGGGGCACCGAAG
1 TGCA-AACAGGGGCACCGAAG
* *
26794287 TGCAAACAGAGGCA-CAAATG
1 TGCAAACAGGGGCACCGAA-G
*
26794307 TGCAAACAGGGGCACCGTAG
1 TGCAAACAGGGGCACCGAAG
** * * * *
26794327 TGGGAATAGAGACACCAAAG
1 TGCAAACAGGGGCACCGAAG
* *
26794347 TGTATACAGGGGCACCGAAG
1 TGCAAACAGGGGCACCGAAG
26794367 TGCAAA
1 TGCAAA
26794373 TCCCATACAA
Statistics
Matches: 63, Mismatches: 21, Indels: 5
0.71 0.24 0.06
Matches are distributed among these distances:
19 3 0.05
20 54 0.86
21 6 0.10
ACGTcount: A:0.37, C:0.21, G:0.31, T:0.11
Consensus pattern (20 bp):
TGCAAACAGGGGCACCGAAG
Found at i:26794315 original size:40 final size:40
Alignment explanation
Indices: 26794266--26794372 Score: 126
Period size: 40 Copynumber: 2.6 Consensus size: 40
26794256 GCATCATAGA
*
26794266 TGCATAACAGGGGCACCGAAGTGCAAACAGAGGCA-CAAATG
1 TGCA-AACAGGGGCACCGAAGTGCAAACAGAGACACCAAA-G
* ** *
26794307 TGCAAACAGGGGCACCGTAGTGGGAATAGAGACACCAAAG
1 TGCAAACAGGGGCACCGAAGTGCAAACAGAGACACCAAAG
* *
26794347 TGTATACAGGGGCACCGAAGTGCAAA
1 TGCAAACAGGGGCACCGAAGTGCAAA
26794373 TCCCATACAA
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
40 47 0.85
41 8 0.15
ACGTcount: A:0.37, C:0.21, G:0.31, T:0.11
Consensus pattern (40 bp):
TGCAAACAGGGGCACCGAAGTGCAAACAGAGACACCAAAG
Found at i:26804794 original size:40 final size:40
Alignment explanation
Indices: 26804696--26805038 Score: 467
Period size: 40 Copynumber: 8.6 Consensus size: 40
26804686 TCCTCGTTCA
* * * * *
26804696 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
26804735 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
26804775 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26804815 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26804855 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
26804895 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
26804935 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
26804975 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
26805015 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
26805039 CAGCATTCAA
Statistics
Matches: 280, Mismatches: 20, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
39 37 0.13
40 235 0.84
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:26812804 original size:40 final size:40
Alignment explanation
Indices: 26812706--26812968 Score: 300
Period size: 40 Copynumber: 6.6 Consensus size: 40
26812696 TCCTCGTTCA
* * * ** *
26812706 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
26812745 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
26812785 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
26812825 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
26812865 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
26812905 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
26812945 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
26812969 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:26820727 original size:40 final size:40
Alignment explanation
Indices: 26820629--26820887 Score: 289
Period size: 40 Copynumber: 6.6 Consensus size: 40
26820619 TCCTCGTTCA
* * * * *
26820629 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
26820668 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26820708 AATGCCTTCGGGACTTAACCCGGA-TTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26820747 AATGCCTTC-GGACTTAACCCGGA-TT-ATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
26820784 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
26820824 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
26820864 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
26820888 CAGCATTCAA
Statistics
Matches: 193, Mismatches: 20, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
37 21 0.11
38 30 0.16
39 62 0.32
40 72 0.37
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:26820810 original size:116 final size:118
Alignment explanation
Indices: 26820629--26820848 Score: 295
Period size: 116 Copynumber: 1.9 Consensus size: 118
26820619 TCCTCGTTCA
* *
26820629 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGTATTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
* *
26820694 TAACAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGATTAATAACTCGCACG
66 TAACAACTCGCACAAAGGCCTTC-GGATCTTAACCCGGATTAATAACTCGCACG
* * *
26820747 AATGCCTTC-GGACTTAACCCGG-ATTA-TAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAACCCGGTATTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGAT
** * *
26820809 TTAGTATCTCGCACAAAGGCCTTCGGATCTTAATCCGGAT
65 TTAACAACTCGCACAAAGGCCTTCGGATCTTAACCCGGAT
26820849 ATATTCACTT
Statistics
Matches: 89, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
115 12 0.13
116 57 0.64
117 11 0.12
118 9 0.10
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (118 bp):
AATGCCTTCGGGACATAACCCGGTATTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
TAACAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATTAATAACTCGCACG
Found at i:26835574 original size:35 final size:35
Alignment explanation
Indices: 26835523--26835592 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
26835513 ACACTCTCGG
*
26835523 GCATATTTGTTTAGTATAACAAATTCCTGCTCATA
1 GCATATTTGTTCAGTATAACAAATTCCTGCTCATA
26835558 GCATATTTGTTCAGTATAACAAATTCCTGCTCATA
1 GCATATTTGTTCAGTATAACAAATTCCTGCTCATA
26835593 CTCTACACAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.39
Consensus pattern (35 bp):
GCATATTTGTTCAGTATAACAAATTCCTGCTCATA
Found at i:26840300 original size:28 final size:28
Alignment explanation
Indices: 26840239--26840474 Score: 384
Period size: 28 Copynumber: 8.4 Consensus size: 28
26840229 ATTAAGTCCA
*
26840239 CACACTCAGTGCTATATAATC-AACTCG
1 CACACTTAGTGCTATATAATCAAACTCG
26840266 CACACTTAGTGCTATATAATCAAACTCG
1 CACACTTAGTGCTATATAATCAAACTCG
* *
26840294 CACACTTAGTGCTACATAATCAAACTTG
1 CACACTTAGTGCTATATAATCAAACTCG
26840322 CACACTTAGTGCTATATAATCAAACTCG
1 CACACTTAGTGCTATATAATCAAACTCG
26840350 CACACTTAGTGCTATATAATCAAACTCG
1 CACACTTAGTGCTATATAATCAAACTCG
26840378 CACACTTAGTGCTATATAATCAAACTCG
1 CACACTTAGTGCTATATAATCAAACTCG
* *
26840406 CACACTTAGTGCTACATAATCAAACTTG
1 CACACTTAGTGCTATATAATCAAACTCG
* * *
26840434 CACACTTAGTGCTATACAATTTAAACCCG
1 CACACTTAGTGCTATATAA-TCAAACTCG
26840463 CACACTTAGTGC
1 CACACTTAGTGC
26840475 CAATCTCATG
Statistics
Matches: 195, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
27 20 0.10
28 157 0.81
29 18 0.09
ACGTcount: A:0.35, C:0.26, G:0.11, T:0.28
Consensus pattern (28 bp):
CACACTTAGTGCTATATAATCAAACTCG
Found at i:26848343 original size:54 final size:56
Alignment explanation
Indices: 26848274--26848480 Score: 323
Period size: 55 Copynumber: 3.8 Consensus size: 56
26848264 ATATTAAGTC
*
26848274 CGCACACTCAGTGCTATATAATC-AACTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATATAATCAAACT
*
26848329 CGCACA-TTAGTGCTACATAATCAAACT-GCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATATAATCAAACT
*
26848383 CGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATATAATCAAACT
* * *
26848439 -GCACACTTAGTGCTATACAATTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATATAA-TCAAACTCGCACACTTAGTGC
26848481 CAATGTCATG
Statistics
Matches: 141, Mismatches: 7, Indels: 7
0.91 0.05 0.05
Matches are distributed among these distances:
54 47 0.33
55 49 0.35
56 45 0.32
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.27
Consensus pattern (56 bp):
CGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATATAATCAAACT
Found at i:26848396 original size:28 final size:28
Alignment explanation
Indices: 26848274--26848480 Score: 323
Period size: 27 Copynumber: 7.5 Consensus size: 28
26848264 ATATTAAGTC
*
26848274 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
26848301 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
26848329 CGCACA-TTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
26848356 -GCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
26848383 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
26848411 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
26848439 -GCACACTTAGTGCTATACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
26848467 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26848481 CAATGTCATG
Statistics
Matches: 167, Mismatches: 8, Indels: 8
0.91 0.04 0.04
Matches are distributed among these distances:
26 5 0.03
27 80 0.48
28 69 0.41
29 13 0.08
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:26852961 original size:20 final size:20
Alignment explanation
Indices: 26852925--26852974 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
26852915 ATCATGATCT
* *
26852925 TTACTTTCTTCTTTACTTAC
1 TTACTTACTTGTTTACTTAC
26852945 TCT-CTTACTTGTTTACTTAC
1 T-TACTTACTTGTTTACTTAC
26852965 TTACTTACTT
1 TTACTTACTT
26852975 AAATAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 1 0.04
20 24 0.92
21 1 0.04
ACGTcount: A:0.16, C:0.24, G:0.02, T:0.58
Consensus pattern (20 bp):
TTACTTACTTGTTTACTTAC
Found at i:26863869 original size:21 final size:20
Alignment explanation
Indices: 26863824--26863869 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
26863814 TTGTTGGAAT
26863824 GGTT-AATTTAATCAATTTA
1 GGTTGAATTTAATCAATTTA
*
26863843 GCTTGAATTTAATTC-ATGTTA
1 GGTTGAATTTAA-TCAAT-TTA
26863864 GGTTGA
1 GGTTGA
26863870 TTGCATTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.30, C:0.07, G:0.17, T:0.46
Consensus pattern (20 bp):
GGTTGAATTTAATCAATTTA
Found at i:26886184 original size:25 final size:25
Alignment explanation
Indices: 26886124--26886184 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
26886114 AGCTCGTATG
* * *
26886124 AGCATACCAATTTATAGCTCATGAA
1 AGCATACCGATCTATAGCTCAAGAA
*
26886149 AGCATATCGATCTATAGCTCAAGAA
1 AGCATACCGATCTATAGCTCAAGAA
*
26886174 AGTATACCGAT
1 AGCATACCGAT
26886185 TAACAGCTCG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (25 bp):
AGCATACCGATCTATAGCTCAAGAA
Found at i:26895934 original size:25 final size:25
Alignment explanation
Indices: 26895900--26895995 Score: 72
Period size: 25 Copynumber: 3.8 Consensus size: 25
26895890 TTCATGTACA
26895900 TGTATGCTCATACGAGCTGTGAATC
1 TGTATGCTCATACGAGCTGTGAATC
* *
26895925 TGTATGCTCACT-TGAGCT-TTAGATC
1 TGTATGCTCA-TACGAGCTGTGA-ATC
* * * *
26895950 GGTATGCTC-TCATGAGCTATAAATC
1 TGTATGCTCAT-ACGAGCTGTGAATC
* *
26895975 AGTATGCTCACACGAGCTGTG
1 TGTATGCTCATACGAGCTGTG
26895996 GGTTGGAACG
Statistics
Matches: 56, Mismatches: 9, Indels: 12
0.73 0.12 0.16
Matches are distributed among these distances:
23 1 0.02
24 2 0.04
25 50 0.89
26 3 0.05
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (25 bp):
TGTATGCTCATACGAGCTGTGAATC
Found at i:26901064 original size:28 final size:28
Alignment explanation
Indices: 26901024--26901140 Score: 173
Period size: 28 Copynumber: 4.2 Consensus size: 28
26901014 TATGCAAATA
*
26901024 ACAGT-ACAGTGTGGGCCTTAGCCCAAT
1 ACAGTAACAATGTGGGCCTTAGCCCAAT
*
26901051 ACAGTAACAATGTGGGCCTTATCCCAAT
1 ACAGTAACAATGTGGGCCTTAGCCCAAT
* *
26901079 ACAATAACAATGTGGGCCTTATCCCAAT
1 ACAGTAACAATGTGGGCCTTAGCCCAAT
* *
26901107 ACAATAACAATGTGAGCCTTAGCCCAAT
1 ACAGTAACAATGTGGGCCTTAGCCCAAT
26901135 ACAGTA
1 ACAGTA
26901141 TCGGTACAGT
Statistics
Matches: 83, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
27 5 0.06
28 78 0.94
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (28 bp):
ACAGTAACAATGTGGGCCTTAGCCCAAT
Found at i:26901526 original size:27 final size:27
Alignment explanation
Indices: 26901496--26901673 Score: 123
Period size: 27 Copynumber: 6.6 Consensus size: 27
26901486 ATCTCCTAGC
26901496 GGTATAAT-AGTCATTTTACCCTATGAG
1 GGTAT-ATCAGTCATTTTACCCTATGAG
*
26901523 GGTATTTCAGTCATTTTACCCTATGAG
1 GGTATATCAGTCATTTTACCCTATGAG
* * *
26901550 GGTATTTC-GATTATTTTACCGTATTG-G
1 GGTATATCAG-TCATTTTACCCTA-TGAG
* * * *
26901577 TGTATTTTAGTTATTTTACCCTATG-G
1 GGTATATCAGTCATTTTACCCTATGAG
* * * *
26901603 AGGTATTTCAGTTATTTTATCCTATAAG
1 -GGTATATCAGTCATTTTACCCTATGAG
* ** *
26901631 GGTATTTTGGTTATTTTACCCTAT-AG
1 GGTATATCAGTCATTTTACCCTATGAG
*
26901657 AGGTATTTCAGTCATTT
1 -GGTATATCAGTCATTT
26901674 ATTGACCTCT
Statistics
Matches: 128, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
26 7 0.05
27 117 0.91
28 4 0.03
ACGTcount: A:0.23, C:0.13, G:0.18, T:0.46
Consensus pattern (27 bp):
GGTATATCAGTCATTTTACCCTATGAG
Found at i:26901554 original size:54 final size:53
Alignment explanation
Indices: 26901503--26901673 Score: 177
Period size: 54 Copynumber: 3.2 Consensus size: 53
26901493 AGCGGTATAA
* * *
26901503 TAGTCATTTTACCCTATGAGGGTATTTCAGTCATTTTACCCTATGAGGGTATT
1 TAGTTATTTTACCCTATGAGGGTATTTTAGTTATTTTACCCTATGAGGGTATT
* * *
26901556 TCGATTATTTTACCGTATTG-GTGTATTTTAGTTATTTTACCCTATG-GAGGTATT
1 TAG-TTATTTTACCCTA-TGAGGGTATTTTAGTTATTTTACCCTATGAG-GGTATT
* * *
26901610 TCAGTTATTTTATCCTATAAGGGTATTTTGGTTATTTTACCCTAT-AGAGGTATT
1 T-AGTTATTTTACCCTATGAGGGTATTTTAGTTATTTTACCCTATGAG-GGTATT
*
26901664 TCAGTCATTT
1 T-AGTTATTT
26901674 ATTGACCTCT
Statistics
Matches: 99, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
53 4 0.04
54 92 0.93
55 3 0.03
ACGTcount: A:0.22, C:0.13, G:0.18, T:0.47
Consensus pattern (53 bp):
TAGTTATTTTACCCTATGAGGGTATTTTAGTTATTTTACCCTATGAGGGTATT
Found at i:26901663 original size:81 final size:81
Alignment explanation
Indices: 26901503--26901673 Score: 229
Period size: 81 Copynumber: 2.1 Consensus size: 81
26901493 AGCGGTATAA
*
26901503 TAGTCATTTTACCCTATGAGGGTATTTCAGTCATTTTACCCTATGAGGGTATTTCGATTATTTTA
1 TAGTCATTTTACCCTATGAGGGTATTTCAGTCATTTTACCCTATAAGGGTATTTCGATTATTTTA
* *
26901568 CCGTATTGGTGTATTT
66 CCCTATAGGTGTATTT
* * * * *
26901584 TAGTTATTTTACCCTATG-GAGGTATTTCAGTTATTTTATCCTATAAGGGTATTTTGGTTATTTT
1 TAGTCATTTTACCCTATGAG-GGTATTTCAGTCATTTTACCCTATAAGGGTATTTCGATTATTTT
26901648 ACCCTATAGAG-GTATTT
65 ACCCTATAG-GTGTATTT
*
26901665 CAGTCATTT
1 TAGTCATTT
26901674 ATTGACCTCT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
80 1 0.01
81 76 0.97
82 1 0.01
ACGTcount: A:0.22, C:0.13, G:0.18, T:0.47
Consensus pattern (81 bp):
TAGTCATTTTACCCTATGAGGGTATTTCAGTCATTTTACCCTATAAGGGTATTTCGATTATTTTA
CCCTATAGGTGTATTT
Found at i:26903102 original size:14 final size:14
Alignment explanation
Indices: 26903083--26903109 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26903073 GTCTCCCTAC
26903083 AGTTTCCAGTTTCT
1 AGTTTCCAGTTTCT
26903097 AGTTTCCAGTTTC
1 AGTTTCCAGTTTC
26903110 CTACAGTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.22, G:0.15, T:0.48
Consensus pattern (14 bp):
AGTTTCCAGTTTCT
Found at i:26919517 original size:14 final size:14
Alignment explanation
Indices: 26919498--26919524 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26919488 GTAGTCTAGT
26919498 TGAACTGAACCGAG
1 TGAACTGAACCGAG
26919512 TGAACTGAACCGA
1 TGAACTGAACCGA
26919525 CCAAGAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.22, G:0.26, T:0.15
Consensus pattern (14 bp):
TGAACTGAACCGAG
Found at i:26932496 original size:47 final size:47
Alignment explanation
Indices: 26932384--26932765 Score: 602
Period size: 47 Copynumber: 8.1 Consensus size: 47
26932374 GAAATGATAG
26932384 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
26932433 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
26932480 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
26932527 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
26932574 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26932621 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
26932668 TAAGGCCTAATGGCCGATGTGATGGATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
26932715 CCGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26932762 TAAG
1 TAAG
26932766 TCTCGAAGGG
Statistics
Matches: 316, Mismatches: 17, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
47 280 0.89
49 36 0.11
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:26932940 original size:37 final size:37
Alignment explanation
Indices: 26932884--26932962 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
26932874 CCGAGCTCTA
* *
26932884 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
26932921 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
26932958 AAGAC
1 AAGAC
26932963 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:26936968 original size:21 final size:20
Alignment explanation
Indices: 26936923--26936968 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
26936913 TTGTTGGAAT
26936923 GGTT-AATTTAATCAATTTA
1 GGTTGAATTTAATCAATTTA
*
26936942 GCTTGAATTTAATTC-ATGTTA
1 GGTTGAATTTAA-TCAAT-TTA
26936963 GGTTGA
1 GGTTGA
26936969 TTTCATTTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.30, C:0.07, G:0.17, T:0.46
Consensus pattern (20 bp):
GGTTGAATTTAATCAATTTA
Found at i:26939942 original size:50 final size:50
Alignment explanation
Indices: 26939829--26940000 Score: 168
Period size: 50 Copynumber: 3.5 Consensus size: 50
26939819 TAAAGAGATG
* * * **
26939829 CCATGTAAGACCATGTCTGGGAAATGGCGTTGGCACCGAGATGAGAGGTC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATGAGAACTC
** * * *
26939879 CCCCGTAAAACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATGAGAACTC
* * * ** *
26939929 CCATGTAAGACCATATCTGGCATATGGCATTGGCA-TTACAAG-GAACATC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATGAGAAC-TC
*
26939978 CCATGTAAGACCATGTCTAGGAC
1 CCATGTAAGACCATGTCTGGGAC
26940001 TTCGCTATGG
Statistics
Matches: 97, Mismatches: 24, Indels: 3
0.78 0.19 0.02
Matches are distributed among these distances:
48 4 0.04
49 24 0.25
50 69 0.71
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.21
Consensus pattern (50 bp):
CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATGAGAACTC
Found at i:26947213 original size:50 final size:50
Alignment explanation
Indices: 26947149--26947270 Score: 145
Period size: 50 Copynumber: 2.4 Consensus size: 50
26947139 AGGTCCCATA
* * * * ** *
26947149 TAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCTCCG
1 TAAGACCATATCTGGGACATGGCATGGGCACCGAGATAAGAACTCCTACG
* * *
26947199 TAAGACCATATCTGGGACATAGCATGGGCACCGATATAAGAACTCCTATG
1 TAAGACCATATCTGGGACATGGCATGGGCACCGAGATAAGAACTCCTACG
*
26947249 TAAGACCATATCTGGGATATGG
1 TAAGACCATATCTGGGACATGG
26947271 TATTGGCAGT
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 60 1.00
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (50 bp):
TAAGACCATATCTGGGACATGGCATGGGCACCGAGATAAGAACTCCTACG
Found at i:26958087 original size:22 final size:22
Alignment explanation
Indices: 26958044--26958087 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
26958034 TTCTACTATC
* * *
26958044 AAACATAACTCAACTTTTACCA
1 AAACATAACTCAAATATGACCA
*
26958066 AAACATACCTCAAATATGACCA
1 AAACATAACTCAAATATGACCA
26958088 TTAACTCTTC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.48, C:0.27, G:0.02, T:0.23
Consensus pattern (22 bp):
AAACATAACTCAAATATGACCA
Found at i:26958654 original size:48 final size:49
Alignment explanation
Indices: 26958602--26958705 Score: 115
Period size: 50 Copynumber: 2.1 Consensus size: 49
26958592 AATTCATCAC
* *
26958602 TTTCATAA-ACATAAGTATACTTCCA-TTG-AAGCTTACCATTTCAATCCT
1 TTTCATAATACATAA-TATACTT-CATTTGAAAACTTACCATTCCAATCCT
* **
26958650 TTTCATAATTACATAATATAGTTCATTTGAAAACTTACCATTCCTTTCCT
1 TTTCATAA-TACATAATATACTTCATTTGAAAACTTACCATTCCAATCCT
26958700 TTTCAT
1 TTTCAT
26958706 GCCCATTGAA
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
48 10 0.21
49 9 0.19
50 28 0.60
ACGTcount: A:0.32, C:0.21, G:0.05, T:0.42
Consensus pattern (49 bp):
TTTCATAATACATAATATACTTCATTTGAAAACTTACCATTCCAATCCT
Found at i:26965779 original size:41 final size:41
Alignment explanation
Indices: 26965714--26965831 Score: 127
Period size: 41 Copynumber: 2.9 Consensus size: 41
26965704 GCATTGAGGA
***
26965714 GTATCGAAGTACAAACAAAAGCACGTATGTGCAATTTAGGG-
1 GTATCGAAGTACAAACAGGGGCACGTATGTGCAATTT-GGGT
26965755 GTATCGAAGTACAAACAGGGGCACGT-TAGTGCAA-TTGGGT
1 GTATCGAAGTACAAACAGGGGCACGTAT-GTGCAATTTGGGT
* *
26965795 GT-TACCACAGTACAAACAGGGGCACGTATGTGAAATT
1 GTAT-CGA-AGTACAAACAGGGGCACGTATGTGCAATT
26965832 CAACAATATT
Statistics
Matches: 66, Mismatches: 5, Indels: 11
0.80 0.06 0.13
Matches are distributed among these distances:
39 4 0.06
40 7 0.11
41 53 0.80
42 2 0.03
ACGTcount: A:0.35, C:0.16, G:0.27, T:0.22
Consensus pattern (41 bp):
GTATCGAAGTACAAACAGGGGCACGTATGTGCAATTTGGGT
Found at i:26975908 original size:145 final size:145
Alignment explanation
Indices: 26975709--26975984 Score: 507
Period size: 145 Copynumber: 1.9 Consensus size: 145
26975699 AACTCAAGGT
* **
26975709 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCTTGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
26975774 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCTTGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
26975839 ATTTCAAGTTCGCAC
131 ATTTCAAGTTCGCAC
*
26975854 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
26975919 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
26975984 A
131 A
26975985 CTTTAAACTC
Statistics
Matches: 126, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
145 126 1.00
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (145 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
ATTTCAAGTTCGCAC
Found at i:26976028 original size:29 final size:29
Alignment explanation
Indices: 26975965--26976032 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
26975955 TAATCAACCG
26975965 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
26975994 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
26976023 CGCACACTTA
1 CGCACACTTA
26976033 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:26976112 original size:174 final size:174
Alignment explanation
Indices: 26975822--26976181 Score: 684
Period size: 174 Copynumber: 2.1 Consensus size: 174
26975812 ATCAACCGCG
*
26975822 CACACTTAGTGCCTTGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGG
1 CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGG
26975887 TAAGGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
66 TAAGGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
*
26975952 TAATAATCAACCGCGCACACTTAGTGCCATGCACTTTAAACTCA
131 TAATAATCAACCACGCACACTTAGTGCCATGCACTTTAAACTCA
26975996 CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGG
1 CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGG
26976061 TAAGGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
66 TAAGGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
* *
26976126 TAATAATCAACCACGCACACTTAGTGCCATGTACTTTAAACTCG
131 TAATAATCAACCACGCACACTTAGTGCCATGCACTTTAAACTCA
26976170 CACACTTAGTGC
1 CACACTTAGTGC
26976182 TGTACAATTT
Statistics
Matches: 182, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 182 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGG
TAAGGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
TAATAATCAACCACGCACACTTAGTGCCATGCACTTTAAACTCA
Found at i:26976173 original size:29 final size:30
Alignment explanation
Indices: 26976134--26976212 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
26976124 CTTAATAATC
26976134 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
26976164 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
26976193 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
26976213 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:26977460 original size:50 final size:50
Alignment explanation
Indices: 26977405--26977504 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
26977395 TTCTTTATTA
26977405 CCCATACTCCTTATTTTATTTTTTTCCTACATACCTCACTAGGCCAACAT
1 CCCATACTCCTTATTTTATTTTTTTCCTACATACCTCACTAGGCCAACAT
26977455 CCCATACTCCTTATTTTATTTTTTTCCTACATACCTCACTAGGCCAACAT
1 CCCATACTCCTTATTTTATTTTTTTCCTACATACCTCACTAGGCCAACAT
26977505 GTTCCCAACA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.24, C:0.32, G:0.04, T:0.40
Consensus pattern (50 bp):
CCCATACTCCTTATTTTATTTTTTTCCTACATACCTCACTAGGCCAACAT
Found at i:26984032 original size:145 final size:145
Alignment explanation
Indices: 26983834--26984109 Score: 525
Period size: 145 Copynumber: 1.9 Consensus size: 145
26983824 AACTCAAGGT
* *
26983834 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
26983899 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
26983964 ATTTCAAGTTCGCAC
131 ATTTCAAGTTCGCAC
*
26983979 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
26984044 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
26984109 A
131 A
26984110 CTTTAAACTC
Statistics
Matches: 128, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
145 128 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.30
Consensus pattern (145 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
ATTTCAAGTTCGCAC
Found at i:26984153 original size:29 final size:29
Alignment explanation
Indices: 26984090--26984157 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
26984080 TAATCAACCG
26984090 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
26984119 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
26984148 CGCACACTTA
1 CGCACACTTA
26984158 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:26984237 original size:174 final size:174
Alignment explanation
Indices: 26983947--26984306 Score: 693
Period size: 174 Copynumber: 2.1 Consensus size: 174
26983937 ATCAACCGCG
26983947 CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGG
1 CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGG
26984012 TAAGGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
66 TAAGGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
*
26984077 TAATAATCAACCGCGCACACTTAGTGCCATGCACTTTAAACTCA
131 TAATAATCAACCACGCACACTTAGTGCCATGCACTTTAAACTCA
26984121 CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGG
1 CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGG
26984186 TAAGGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
66 TAAGGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
* *
26984251 TAATAATCAACCACGCACACTTAGTGCCATGTACTTTAAACTCG
131 TAATAATCAACCACGCACACTTAGTGCCATGCACTTTAAACTCA
26984295 CACACTTAGTGC
1 CACACTTAGTGC
26984307 TGTACAATTT
Statistics
Matches: 183, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 183 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (174 bp):
CACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGG
TAAGGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCT
TAATAATCAACCACGCACACTTAGTGCCATGCACTTTAAACTCA
Found at i:26984298 original size:29 final size:30
Alignment explanation
Indices: 26984259--26984337 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
26984249 CTTAATAATC
26984259 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
26984289 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
26984318 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
26984338 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:26985999 original size:41 final size:40
Alignment explanation
Indices: 26985902--26985999 Score: 106
Period size: 41 Copynumber: 2.4 Consensus size: 40
26985892 TGTTACAACT
* * * *
26985902 GAAGTATAAACAGGGGCACGCATGTGCAATTTAGTGGTAC
1 GAAGTACAAACAGGGGAACGCATGTGCAATTCAGGGGTAC
* * * *
26985942 CAACGTACAGATAGGGGAACGTATGTGCAATTCAGGGGTATC
1 GAA-GTACAAACAGGGGAACGCATGTGCAATTCAGGGGTA-C
26985984 GAAGTACAAACAGGGG
1 GAAGTACAAACAGGGG
26986000 CATATATGTG
Statistics
Matches: 45, Mismatches: 11, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
40 2 0.04
41 40 0.89
42 3 0.07
ACGTcount: A:0.34, C:0.15, G:0.32, T:0.19
Consensus pattern (40 bp):
GAAGTACAAACAGGGGAACGCATGTGCAATTCAGGGGTAC
Found at i:26989359 original size:20 final size:20
Alignment explanation
Indices: 26989334--26989373 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
26989324 ATATATCCCA
26989334 TTTCTAGCTTTCATGAAGGG
1 TTTCTAGCTTTCATGAAGGG
26989354 TTTCTAGCTTTCATGAAGGG
1 TTTCTAGCTTTCATGAAGGG
26989374 GATAGGTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.15, G:0.25, T:0.40
Consensus pattern (20 bp):
TTTCTAGCTTTCATGAAGGG
Found at i:26992600 original size:20 final size:20
Alignment explanation
Indices: 26992575--26992621 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
26992565 AAGCTTATGC
*
26992575 TAAGTAAATGAAATGGAAAT
1 TAAGTAAATGAAATGGAAAG
*
26992595 TAAGTAAATGAATTGGAAAG
1 TAAGTAAATGAAATGGAAAG
26992615 TAAGTAA
1 TAAGTAA
26992622 GAATGGTAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.53, C:0.00, G:0.21, T:0.26
Consensus pattern (20 bp):
TAAGTAAATGAAATGGAAAG
Found at i:26994355 original size:24 final size:24
Alignment explanation
Indices: 26994324--26994379 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
26994314 TAAAGGAAAC
* *
26994324 ACAGAATACGCCATAAAGGCATTT
1 ACAGAATAAGCCATAAAGGAATTT
*
26994348 ACAGAATAAGCCGTAAAGGAATTT
1 ACAGAATAAGCCATAAAGGAATTT
*
26994372 ATAGAATA
1 ACAGAATA
26994380 TGCACAAGGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.46, C:0.14, G:0.18, T:0.21
Consensus pattern (24 bp):
ACAGAATAAGCCATAAAGGAATTT
Found at i:26995677 original size:22 final size:23
Alignment explanation
Indices: 26995650--26995694 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
26995640 CAAAAGAAAC
26995650 TGAAATAG-CATT-AAGAAAAGAT
1 TGAAAT-GTCATTAAAGAAAAGAT
26995672 TGAAATGTCATTACAAGAAAAGA
1 TGAAATGTCATTA-AAGAAAAGA
26995695 AAATGACTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 1 0.05
22 10 0.50
24 9 0.45
ACGTcount: A:0.53, C:0.07, G:0.18, T:0.22
Consensus pattern (23 bp):
TGAAATGTCATTAAAGAAAAGAT
Found at i:26998204 original size:21 final size:22
Alignment explanation
Indices: 26998180--26998221 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
26998170 AAGAATGTAC
* *
26998180 ATAAAA-CGATCCTATAAATTT
1 ATAAAAGCAATCCTAAAAATTT
26998201 ATAAAAGCAATCCTAAAAATT
1 ATAAAAGCAATCCTAAAAATT
26998222 CTAAAATGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.52, C:0.14, G:0.05, T:0.29
Consensus pattern (22 bp):
ATAAAAGCAATCCTAAAAATTT
Found at i:26998238 original size:21 final size:23
Alignment explanation
Indices: 26998214--26998257 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
26998204 AAAGCAATCC
*
26998214 TAAAAAT-TCTAAA-ATGTATTA
1 TAAAAATATATAAACATGTATTA
26998235 TAAAAATATATAAACATGTATTA
1 TAAAAATATATAAACATGTATTA
26998258 ATTATAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 7 0.35
22 5 0.25
23 8 0.40
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.36
Consensus pattern (23 bp):
TAAAAATATATAAACATGTATTA
Found at i:27000806 original size:21 final size:21
Alignment explanation
Indices: 27000782--27000821 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
27000772 ATTCCAAAGA
* *
27000782 TAACTCATTAGAAGTATATTG
1 TAACTCACTAAAAGTATATTG
27000803 TAACTCACTAAAAGTATAT
1 TAACTCACTAAAAGTATAT
27000822 GAATTAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.35
Consensus pattern (21 bp):
TAACTCACTAAAAGTATATTG
Found at i:27005889 original size:31 final size:30
Alignment explanation
Indices: 27005854--27005914 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 30
27005844 TCCACAGAAG
*
27005854 TAGTCCATTGGGACAGTAAACACAAGATAGA
1 TAGTCCACTGGGACAGTAAACA-AAGATAGA
**
27005885 TAGTCTGCTGGGACAGTAAACAAAGATAGA
1 TAGTCCACTGGGACAGTAAACAAAGATAGA
27005915 GTCCGCCAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 8 0.30
31 19 0.70
ACGTcount: A:0.41, C:0.15, G:0.25, T:0.20
Consensus pattern (30 bp):
TAGTCCACTGGGACAGTAAACAAAGATAGA
Found at i:27005927 original size:28 final size:30
Alignment explanation
Indices: 27005864--27005935 Score: 94
Period size: 28 Copynumber: 2.4 Consensus size: 30
27005854 TAGTCCATTG
* **
27005864 GGACAGTAAACACAAGATAGATAGTCTGCTG
1 GGACAGTAAACACAAGATAGA-AGTCCGCCA
27005895 GGACAGTAAACA-AAGATAG-AGTCCGCCA
1 GGACAGTAAACACAAGATAGAAGTCCGCCA
27005923 GGACAGTAAACAC
1 GGACAGTAAACAC
27005936 GGAGTAAGTC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 18 0.49
30 7 0.19
31 12 0.32
ACGTcount: A:0.42, C:0.19, G:0.25, T:0.14
Consensus pattern (30 bp):
GGACAGTAAACACAAGATAGAAGTCCGCCA
Found at i:27005945 original size:28 final size:28
Alignment explanation
Indices: 27005895--27005955 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
27005885 TAGTCTGCTG
*
27005895 GGACAGTAAACAAAGATAGAGTCCGCCA
1 GGACAGTAAACAAAGATAGAGTCCACCA
**
27005923 GGACAGTAAACACGGAGTA-AGTCCACCA
1 GGACAGTAAACAAAGA-TAGAGTCCACCA
27005951 GGACA
1 GGACA
27005956 AGTGAAATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 27 0.93
29 2 0.07
ACGTcount: A:0.41, C:0.23, G:0.26, T:0.10
Consensus pattern (28 bp):
GGACAGTAAACAAAGATAGAGTCCACCA
Found at i:27010129 original size:40 final size:39
Alignment explanation
Indices: 27010077--27010260 Score: 160
Period size: 40 Copynumber: 4.6 Consensus size: 39
27010067 TAACTCATAC
* *
27010077 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTAGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAAAACTAGCACA
* * * *
27010117 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTTGGACA
1 AATGCCTTCGGGACTTAACCCGGAATTA-AAACTAGCACA
*
27010157 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCA-CACA
1 AATGCCTTCGGGACTTAACCCGGAATTAA-AACT-AGCACA
** **
27010197 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TA-AAAC-TAGCACA
*
27010238 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
27010261 CAGCATTCAA
Statistics
Matches: 117, Mismatches: 17, Indels: 19
0.76 0.11 0.12
Matches are distributed among these distances:
39 8 0.07
40 99 0.85
41 10 0.09
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGAATTAAAACTAGCACA
Found at i:27010201 original size:80 final size:80
Alignment explanation
Indices: 27010075--27010260 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
27010065 AGTAACTCAT
* * *
27010075 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTAGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTAGCACAAATGCCTTC-GGATCTTAACCCG
*
27010139 GA-ATTAGT-ATCTT-GG
65 GATA-TAGTCA-CTTAGC
**
27010154 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCA-CACAAATGCCTTCGGATCTTAGTC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACT-AGCACAAATGCCTTCGGATCTTAACC
27010217 CGGATATAGTCACTTAGC
63 CGGATATAGTCACTTAGC
*
27010235 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
27010261 CAGCATTCAA
Statistics
Matches: 93, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
79 11 0.12
80 73 0.78
81 9 0.10
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTAGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:27018024 original size:39 final size:40
Alignment explanation
Indices: 27017981--27018148 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
27017971 CTCGTTCAAG
* * * *
27017981 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
27018020 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
27018060 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
27018100 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
27018140 TGCCTTCGG
1 TGCCTTCGG
27018149 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:27018132 original size:80 final size:80
Alignment explanation
Indices: 27018016--27018201 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
27018006 AGTAACTCAT
* * *
27018016 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
27018080 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
27018095 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
27018159 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
27018176 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
27018202 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:27018161 original size:40 final size:40
Alignment explanation
Indices: 27018018--27018201 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
27018008 TAACTCATAC
* *
27018018 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
27018058 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
27018098 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
27018138 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
27018179 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
27018202 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 8 0.06
40 105 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:27023359 original size:27 final size:27
Alignment explanation
Indices: 27023329--27023506 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
27023319 ATATTGAGTC
* * * *
27023329 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
27023356 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
27023383 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
27023411 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
27023438 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
27023465 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
27023492 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
27023507 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:27023468 original size:82 final size:81
Alignment explanation
Indices: 27023350--27023505 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
27023340 TGCTATATAA
* *
27023350 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
27023415 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
27023432 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
27023496 CACTTAGTGC
65 CACTTAGTGC
27023506 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Done.