Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64892201
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1760000 characters in sequence are not A, C, G, or T
File 90 of 221
Found at i:27408167 original size:55 final size:55
Alignment explanation
Indices: 27408083--27408289 Score: 360
Period size: 55 Copynumber: 3.8 Consensus size: 55
27408073 ATATTAAGTC
* * * *
27408083 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
27408138 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
*
27408193 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
*
27408248 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
27408290 GCACAATTTA
Statistics
Matches: 147, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 147 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
Found at i:27410530 original size:12 final size:12
Alignment explanation
Indices: 27410497--27410531 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
27410487 ATTTCTATGC
*
27410497 AAAGGGAAAGGA
1 AAAGGGAATGGA
27410509 AAAGGAGAATGGA
1 AAAGG-GAATGGA
27410522 AAAGGGAATG
1 AAAGGGAATG
27410532 ATAGATGAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.54, C:0.00, G:0.40, T:0.06
Consensus pattern (12 bp):
AAAGGGAATGGA
Found at i:27411367 original size:28 final size:28
Alignment explanation
Indices: 27411313--27411373 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
27411303 ATACGGTATG
* *
27411313 CAGAAACAGACTGGGCCTGAGCCCATTAA
1 CAGAAACAGACTGGACCTAAGCCCATT-A
*
27411342 CAGAAACA-AGTGGACCTAAGCCCATTA
1 CAGAAACAGACTGGACCTAAGCCCATTA
27411369 CAGAA
1 CAGAA
27411374 TCAGTATCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 6 0.21
28 15 0.52
29 8 0.28
ACGTcount: A:0.39, C:0.26, G:0.21, T:0.13
Consensus pattern (28 bp):
CAGAAACAGACTGGACCTAAGCCCATTA
Found at i:27419053 original size:40 final size:41
Alignment explanation
Indices: 27418963--27419147 Score: 197
Period size: 40 Copynumber: 4.6 Consensus size: 41
27418953 TTGAATGATG
*
27418963 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA
* *
27419003 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAATA
* *
27419043 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTATTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
* * *
27419082 TCCGGGTTAAGTCCCGAAGGCTTTTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
* *
27419122 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
27419148 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 14, Indels: 16
0.80 0.09 0.10
Matches are distributed among these distances:
39 35 0.28
40 74 0.60
41 13 0.11
42 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
Found at i:27419169 original size:79 final size:79
Alignment explanation
Indices: 27419016--27419180 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
27419006 GGACTAAGAT
* ** * *
27419016 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTATTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
27419081 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
27419095 CCGAAGGCTTTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-C
* *
27419158 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
27419174 CCGAAGG
1 CCGAAGG
27419181 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.64
80 24 0.33
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:27424372 original size:40 final size:39
Alignment explanation
Indices: 27424290--27424472 Score: 192
Period size: 40 Copynumber: 4.6 Consensus size: 39
27424280 TTGAATTGTA
* *
27424290 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-AATATC
1 CGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAA-ATC
* * *
27424330 CGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTC
1 CGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAATC
* *
27424370 CGGGCTAAGCCCGAAGGCATTTGTGCGAGTTATTAAATC
1 CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATC
* *
27424409 CGGGTTAAGTCCCGAAGGCTTTTGTGCGAGTTACTATAA-C
1 CGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AATC
*
27424449 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGT-CCGAAGGCATTTG
27424473 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 34 0.28
40 75 0.62
41 12 0.10
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATC
Found at i:27424424 original size:79 final size:81
Alignment explanation
Indices: 27424290--27424472 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 81
27424280 TTGAATTGTA
27424290 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTTG
*
27424354 TGCGAGATACTA-ATTC
66 TGCGAGATACTATA-AC
* * * ** *
27424370 CGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTATTAA-ATCCGGGTTAAG-TCCCGAAGGCTTT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGA-CAATATCCGGACTAAGAT-CCGAAGGCATT
*
27424431 TGTGCGAGTTACTATAAC
64 TGTGCGAGATACTATAAC
*
27424449 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
27424473 AACGAGGAGC
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
78 1 0.01
79 55 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (81 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGATACTATAAC
Found at i:27424494 original size:79 final size:79
Alignment explanation
Indices: 27424290--27424505 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
27424280 TTGAATTGTA
** * **
27424290 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCATT
1 CGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAA-ATCCGGGTTAA-ATCCCGAAGGCATT
*
27424352 TGTGCGAGATACTAATTC
62 TGTGCGAGATACTAATAC
** * * * *
27424370 CGGGCTAAGCCCGAAGGCATTTGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCTTTTGTG
1 CGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTG
*
27424435 CGAGTTACT-ATAAC
66 CGAGATACTAAT-AC
* * *
27424449 CGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
27424506 TACGTGATTT
Statistics
Matches: 113, Mismatches: 17, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
78 3 0.03
79 68 0.60
80 42 0.37
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTG
CGAGATACTAATAC
Found at i:27426171 original size:18 final size:18
Alignment explanation
Indices: 27426145--27426187 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
27426135 TATTCTCTAA
27426145 CCACCACAATC-GAGCCTT
1 CCACCACAA-CGGAGCCTT
*
27426163 CCACTACAACGGAGCCTT
1 CCACCACAACGGAGCCTT
27426181 CCACCAC
1 CCACCAC
27426188 CATTAAATAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 1 0.05
18 21 0.95
ACGTcount: A:0.28, C:0.47, G:0.12, T:0.14
Consensus pattern (18 bp):
CCACCACAACGGAGCCTT
Found at i:27426692 original size:20 final size:20
Alignment explanation
Indices: 27426664--27426702 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
27426654 TTTTAAGTGA
*
27426664 AATATAATGTTATTTAATTT
1 AATAAAATGTTATTTAATTT
27426684 AATAAAATGTTATTTAATT
1 AATAAAATGTTATTTAATT
27426703 AATTAATTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (20 bp):
AATAAAATGTTATTTAATTT
Found at i:27428284 original size:22 final size:22
Alignment explanation
Indices: 27428259--27428300 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
27428249 TACTCAGCCA
27428259 TACATCAATATTTCA-ATACTCG
1 TACATCAATA-TTCACATACTCG
27428281 TACATCAATATTCACATACT
1 TACATCAATATTCACATACT
27428301 ATACTCTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.38, C:0.24, G:0.02, T:0.36
Consensus pattern (22 bp):
TACATCAATATTCACATACTCG
Found at i:27431389 original size:29 final size:28
Alignment explanation
Indices: 27431353--27431430 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
27431343 TCATGAGATT
27431353 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
27431383 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
27431410 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
27431431 GATTACTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:27431647 original size:173 final size:174
Alignment explanation
Indices: 27431383--27431709 Score: 584
Period size: 173 Copynumber: 1.9 Consensus size: 174
27431373 AAATTGTACA
*
27431383 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTACTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAGCACTATG
* *
27431448 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGAC-TTACAGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACAGAGTCAA
27431512 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * *
27431556 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAGCACTATG
*
27431621 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACAGAGTCAA
27431686 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
27431710 ACCTTGAGTT
Statistics
Matches: 146, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
173 112 0.77
174 34 0.23
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACAGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:27437141 original size:40 final size:40
Alignment explanation
Indices: 27437058--27437320 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
27437048 TTGAATGCTG
* * * * * *
27437058 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
27437098 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
*
27437138 TCCGGGTTAAGTCCCGAAGGCATTCCTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
27437178 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
27437218 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
27437258 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
27437297 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
27437321 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:27437340 original size:79 final size:80
Alignment explanation
Indices: 27437097--27437355 Score: 247
Period size: 80 Copynumber: 3.3 Consensus size: 80
27437087 AAGTGAATAT
* * * * * *
27437097 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
*** * *
27437161 TCCTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
27437177 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
27437242 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
27437257 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
27437321 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
27437336 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
27437356 TACATGATTT
Statistics
Matches: 155, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:27448759 original size:39 final size:40
Alignment explanation
Indices: 27448659--27448880 Score: 239
Period size: 39 Copynumber: 5.7 Consensus size: 40
27448649 TTGAATGTTG
*
27448659 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
27448697 AT-CGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* *
27448737 TTCGGGCTAAG-CCCGAAGGCATTTTTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
27448776 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
27448815 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
27448854 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
27448881 AACGAGGAGC
Statistics
Matches: 159, Mismatches: 14, Indels: 19
0.83 0.07 0.10
Matches are distributed among these distances:
38 16 0.10
39 77 0.48
40 65 0.41
41 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:27448902 original size:79 final size:79
Alignment explanation
Indices: 27448659--27448913 Score: 197
Period size: 79 Copynumber: 3.3 Consensus size: 79
27448649 TTGAATGTTG
* * * * *
27448659 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCGGACTAAGATCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATACCGGGCTAAG-CCCGAAGGCAT
** *
27448720 TTGTGCGAGAT-ACTAAT
63 TTGAACGAG-TGACTAAA
* * * *
27448737 TTCGGGCTAAG-CCCGAAGGCATTTTTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
27448801 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
27448815 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
27448878 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
27448895 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
27448914 TACGTGATTT
Statistics
Matches: 148, Mismatches: 19, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
77 10 0.07
78 48 0.32
79 64 0.43
80 26 0.18
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:27456722 original size:40 final size:40
Alignment explanation
Indices: 27456632--27456816 Score: 166
Period size: 40 Copynumber: 4.7 Consensus size: 40
27456622 TTGAATGATG
*
27456632 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
27456671 ATCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* * * *
27456712 TCCGGGCTAAG-CCCGAAGGCATTTTTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
27456751 TCCGGGTTAAGTCCCGAAGGCTTTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
27456790 AACTGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
27456817 AACGAGGAGC
Statistics
Matches: 119, Mismatches: 19, Indels: 14
0.78 0.12 0.09
Matches are distributed among these distances:
39 34 0.29
40 71 0.60
41 13 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:27458523 original size:18 final size:18
Alignment explanation
Indices: 27458497--27458539 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
27458487 TATTCTCTAA
27458497 CCACCACAATC-GAGCCTT
1 CCACCACAA-CGGAGCCTT
*
27458515 CCACTACAACGGAGCCTT
1 CCACCACAACGGAGCCTT
27458533 CCACCAC
1 CCACCAC
27458540 CATTAAATAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 1 0.05
18 21 0.95
ACGTcount: A:0.28, C:0.47, G:0.12, T:0.14
Consensus pattern (18 bp):
CCACCACAACGGAGCCTT
Found at i:27460644 original size:22 final size:22
Alignment explanation
Indices: 27460604--27460645 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
27460594 TACTCAGCCA
*
27460604 TACATCAATATTTCAATACTCG
1 TACATCAATACTTCAATACTCG
27460626 TACATCAAT-CTTCACATACT
1 TACATCAATACTTCA-ATACT
27460646 ATACTCTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.36, C:0.26, G:0.02, T:0.36
Consensus pattern (22 bp):
TACATCAATACTTCAATACTCG
Found at i:27463735 original size:29 final size:28
Alignment explanation
Indices: 27463699--27463771 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 28
27463689 TCATGAGATT
* *
27463699 GGCACTAAGTGTGTGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGAGTTTAAA--GTACA
27463729 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGAGTTTAAAGTACA
27463756 TGGCACTAAGTGTGCG
1 -GGCACTAAGTGTGCG
27463772 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
27 5 0.13
29 34 0.87
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGAGTTTAAAGTACA
Found at i:27463993 original size:173 final size:174
Alignment explanation
Indices: 27463729--27464055 Score: 584
Period size: 173 Copynumber: 1.9 Consensus size: 174
27463719 AAATTGTACA
*
27463729 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
27463794 TGTGCCAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGAC-TTACCGAGTCGA
66 TGTGCCAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
27463858 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
27463902 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
27463967 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGATGGGTGCGACTTTACCGAGTCAA
66 TGTGCCAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
27464032 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
27464056 ACCTTGAGTT
Statistics
Matches: 146, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
173 111 0.76
174 35 0.24
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCCAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:27471587 original size:39 final size:39
Alignment explanation
Indices: 27471538--27471747 Score: 316
Period size: 39 Copynumber: 5.3 Consensus size: 39
27471528 GGACTAAGAT
27471538 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
27471577 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
*
27471616 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
* * *
27471655 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-C
* *
27471695 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-TCCGGGCTAAG-C
27471735 CCGAAGGCATTTG
1 CCGAAGGCATTTG
27471748 AACGAGGAGC
Statistics
Matches: 158, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 112 0.71
40 46 0.29
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
Found at i:27490135 original size:21 final size:21
Alignment explanation
Indices: 27490090--27490152 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
27490080 TTTGAACCAT
* *
27490090 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
*
27490112 TACCATTTCGTACCCATTCCA
1 TACCATTTCGTACCAATTCCA
* *
27490133 TACTATTTCGAACCAATTCC
1 TACCATTTCGTACCAATTCC
27490153 CAAATACCAA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
21 22 0.63
22 13 0.37
ACGTcount: A:0.32, C:0.33, G:0.05, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:27492533 original size:21 final size:21
Alignment explanation
Indices: 27492472--27492534 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 21
27492462 TTTGAACCAT
* * *
27492472 TACCAATTCGTACCAAATACCA
1 TACCATTTCGAACC-AATTCCA
* * *
27492494 TACCATTTTGTACCCATTCCA
1 TACCATTTCGAACCAATTCCA
*
27492515 TACTATTTCGAACCAATTCC
1 TACCATTTCGAACCAATTCC
27492535 CAAATACCAA
Statistics
Matches: 33, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.32, C:0.32, G:0.05, T:0.32
Consensus pattern (21 bp):
TACCATTTCGAACCAATTCCA
Found at i:27496565 original size:10 final size:10
Alignment explanation
Indices: 27496550--27496611 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
27496540 TTTGAACCAT
*
27496550 TACCAATTCG
1 TACCAATTCA
*
27496560 TACCAAATACCA
1 TACC-AAT-TCA
*
27496572 TACCATTTCA
1 TACCAATTCA
27496582 TACCAATTCCA
1 TACCAATT-CA
* *
27496593 TACCATTTCG
1 TACCAATTCA
27496603 TACCAATTC
1 TACCAATTC
27496612 CCAAATACCA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
10 22 0.54
11 14 0.34
12 5 0.12
ACGTcount: A:0.34, C:0.32, G:0.03, T:0.31
Consensus pattern (10 bp):
TACCAATTCA
Found at i:27496595 original size:21 final size:21
Alignment explanation
Indices: 27496550--27496612 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
27496540 TTTGAACCAT
* *
27496550 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
*
27496572 TACCATTTCATACCAATTCCA
1 TACCATTTCGTACCAATTCCA
27496593 TACCATTTCGTACCAATTCC
1 TACCATTTCGTACCAATTCC
27496613 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 25 0.68
22 12 0.32
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:27500681 original size:23 final size:22
Alignment explanation
Indices: 27500629--27500681 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
27500619 TCCACGTCTT
*
27500629 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
27500651 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
27500674 TTTCTTTT
1 TTTCTTTT
27500682 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:27505542 original size:11 final size:13
Alignment explanation
Indices: 27505526--27505601 Score: 52
Period size: 12 Copynumber: 5.7 Consensus size: 13
27505516 TTGGAGTAAC
27505526 AAAAAAA-TC-AA
1 AAAAAAATTCGAA
27505537 AAAAAAATTCGAAA
1 AAAAAAATTCG-AA
*
27505551 AAAAAAATTGATTGAAA
1 AAAAAAA-T--TCG-AA
27505568 AAAAAATATTC-AA
1 AAAAAA-ATTCGAA
*
27505581 AAAAAAAGT-GAA
1 AAAAAAATTCGAA
27505593 AAAAAAATT
1 AAAAAAATT
27505602 GAGCAAAAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 15
0.74 0.06 0.21
Matches are distributed among these distances:
11 7 0.13
12 14 0.26
13 8 0.15
14 9 0.17
15 2 0.04
17 12 0.23
18 1 0.02
ACGTcount: A:0.72, C:0.04, G:0.07, T:0.17
Consensus pattern (13 bp):
AAAAAAATTCGAA
Found at i:27505543 original size:12 final size:13
Alignment explanation
Indices: 27505526--27505558 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
27505516 TTGGAGTAAC
27505526 AAAAAAATC-AAA
1 AAAAAAATCGAAA
*
27505538 AAAAAATTCGAAA
1 AAAAAAATCGAAA
27505551 AAAAAAAT
1 AAAAAAAT
27505559 TGATTGAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 8 0.44
13 10 0.56
ACGTcount: A:0.79, C:0.06, G:0.03, T:0.12
Consensus pattern (13 bp):
AAAAAAATCGAAA
Found at i:27505552 original size:14 final size:14
Alignment explanation
Indices: 27505535--27505599 Score: 55
Period size: 13 Copynumber: 4.6 Consensus size: 14
27505525 CAAAAAAATC
27505535 AAAAAAAAATTCGA
1 AAAAAAAAATTCGA
*
27505549 AAAAAAAAATTGATTGA
1 AAAAAAAAA-T--TCGA
27505566 AAAAAAAATATTC--
1 AAAAAAAA-ATTCGA
*
27505579 AAAAAAAAAGT-GA
1 AAAAAAAAATTCGA
27505592 AAAAAAAA
1 AAAAAAAA
27505600 TTGAGCAAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 13
0.72 0.05 0.22
Matches are distributed among these distances:
12 2 0.05
13 16 0.38
14 9 0.21
15 2 0.05
17 12 0.29
18 1 0.02
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.15
Consensus pattern (14 bp):
AAAAAAAAATTCGA
Found at i:27505611 original size:17 final size:18
Alignment explanation
Indices: 27505591--27505631 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
27505581 AAAAAAAGTG
* *
27505591 AAAAAAAAA-TTGAGCAA
1 AAAAAAAAAGGTGACCAA
27505608 AAAAAAAAAGGTGACCAA
1 AAAAAAAAAGGTGACCAA
27505626 AAAAAA
1 AAAAAA
27505632 TCAAGTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.73, C:0.07, G:0.12, T:0.07
Consensus pattern (18 bp):
AAAAAAAAAGGTGACCAA
Found at i:27505611 original size:42 final size:42
Alignment explanation
Indices: 27505526--27505616 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 42
27505516 TTGGAGTAAC
*
27505526 AAAAAAATCAAAAAAAAATTCGAAAAAAAAAATTGATTG-AAAA
1 AAAAAAATCAAAAAAAAAGTCGAAAAAAAAAATTGA--GCAAAA
*
27505569 AAAAATATTCAAAAAAAAAGT-G-AAAAAAAAATTGAGCAAAA
1 AAAAA-AATCAAAAAAAAAGTCGAAAAAAAAAATTGAGCAAAA
27505610 AAAAAAA
1 AAAAAAA
27505617 GGTGACCAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
40 2 0.05
41 9 0.21
42 13 0.30
43 6 0.14
44 13 0.30
ACGTcount: A:0.74, C:0.04, G:0.08, T:0.14
Consensus pattern (42 bp):
AAAAAAATCAAAAAAAAAGTCGAAAAAAAAAATTGAGCAAAA
Found at i:27506708 original size:17 final size:18
Alignment explanation
Indices: 27506676--27506709 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
27506666 AAAAGAGAGT
*
27506676 GAGATTGAAGGAAGAAAC
1 GAGAGTGAAGGAAGAAAC
27506694 GAGAGTGAA-GAAGAAA
1 GAGAGTGAAGGAAGAAA
27506710 GGAGTGTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.53, C:0.03, G:0.35, T:0.09
Consensus pattern (18 bp):
GAGAGTGAAGGAAGAAAC
Found at i:27514399 original size:12 final size:12
Alignment explanation
Indices: 27514382--27514439 Score: 71
Period size: 13 Copynumber: 4.7 Consensus size: 12
27514372 AAGAGGAAAT
27514382 TTGAAAAAAAAA
1 TTGAAAAAAAAA
27514394 TTGAAAAAAAAAA
1 TTG-AAAAAAAAA
*
27514407 TCGAAAAAAAAA
1 TTGAAAAAAAAA
*
27514419 TTTTAAAAAAAAA
1 -TTGAAAAAAAAA
*
27514432 TCGAAAAA
1 TTGAAAAA
27514440 TCGAAGTATA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
12 18 0.46
13 21 0.54
ACGTcount: A:0.72, C:0.03, G:0.07, T:0.17
Consensus pattern (12 bp):
TTGAAAAAAAAA
Found at i:27514412 original size:25 final size:25
Alignment explanation
Indices: 27514384--27514439 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
27514374 GAGGAAATTT
27514384 GAAAAAAAAATTGAAAAAAAAAATC
1 GAAAAAAAAATTGAAAAAAAAAATC
**
27514409 GAAAAAAAAATTTTAAAAAAAAATC
1 GAAAAAAAAATTGAAAAAAAAAATC
27514434 GAAAAA
1 GAAAAA
27514440 TCGAAGTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.75, C:0.04, G:0.07, T:0.14
Consensus pattern (25 bp):
GAAAAAAAAATTGAAAAAAAAAATC
Found at i:27514432 original size:13 final size:13
Alignment explanation
Indices: 27514378--27514432 Score: 76
Period size: 13 Copynumber: 4.3 Consensus size: 13
27514368 AGAGAAGAGG
27514378 AAATTTGAAAAAA
1 AAATTTGAAAAAA
27514391 AAA-TTGAAAAAA
1 AAATTTGAAAAAA
* *
27514403 AAAATCGAAAAAA
1 AAATTTGAAAAAA
*
27514416 AAATTTTAAAAAA
1 AAATTTGAAAAAA
27514429 AAAT
1 AAAT
27514433 CGAAAAATCG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
12 12 0.32
13 25 0.68
ACGTcount: A:0.73, C:0.02, G:0.05, T:0.20
Consensus pattern (13 bp):
AAATTTGAAAAAA
Found at i:27514451 original size:26 final size:25
Alignment explanation
Indices: 27514384--27514456 Score: 76
Period size: 25 Copynumber: 2.9 Consensus size: 25
27514374 GAGGAAATTT
*
27514384 GAAAAAAAAATTGA-AAAAAAAAATC
1 GAAAAAAAAAGT-ATAAAAAAAAATC
* *
27514409 GAAAAAAAAATTTTAAAAAAAAATC
1 GAAAAAAAAAGTATAAAAAAAAATC
**
27514434 GAAAAATCGAAGTATAAAAAAAA
1 GAAAAA-AAAAGTATAAAAAAAA
27514457 GAGTGAAAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
25 29 0.71
26 12 0.29
ACGTcount: A:0.73, C:0.04, G:0.08, T:0.15
Consensus pattern (25 bp):
GAAAAAAAAAGTATAAAAAAAAATC
Found at i:27515400 original size:37 final size:37
Alignment explanation
Indices: 27515349--27515419 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
27515339 CATTCTTGTA
27515349 AAGAGAAAACAAAGAAAA-GAAAAGAAAAAGAAAAAGC
1 AAGAGAAAACAAAGAAAATG-AAAGAAAAAGAAAAAGC
*
27515386 AAGAGAAGAA-AAAGAAAATGAAATAAAAAGAAAA
1 AAGAGAA-AACAAAGAAAATGAAAGAAAAAGAAAA
27515420 GAGAGGCAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
37 28 0.90
38 3 0.10
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (37 bp):
AAGAGAAAACAAAGAAAATGAAAGAAAAAGAAAAAGC
Found at i:27515419 original size:6 final size:6
Alignment explanation
Indices: 27515359--27515408 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
27515349 AAGAGAAAAC
*
27515359 AAAG-A AAAG-A AAAGAA AAAGAA AAAGCAA GAGAAGAA AAAGAA AATGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAG-AA -A-AAGAA AAAGAA AAAGAA
27515408 A
1 A
27515409 TAAAAAGAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
5 9 0.22
6 22 0.55
7 3 0.08
8 3 0.08
9 3 0.08
ACGTcount: A:0.76, C:0.02, G:0.20, T:0.02
Consensus pattern (6 bp):
AAAGAA
Found at i:27515501 original size:11 final size:12
Alignment explanation
Indices: 27515469--27515499 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
27515459 TTGAGAGAAC
27515469 TTGAAAAAGCCT
1 TTGAAAAAGCCT
27515481 TTGAAAAAGCCT
1 TTGAAAAAGCCT
27515493 TTGAAAA
1 TTGAAAA
27515500 GCAAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:27517713 original size:30 final size:30
Alignment explanation
Indices: 27517677--27517749 Score: 105
Period size: 30 Copynumber: 2.5 Consensus size: 30
27517667 AGCTCACTCC
* *
27517677 TAGCTCATATTTAGCTCACGAGCTAAACCT
1 TAGCTCATATTTAGCTCACAAGCTAAAACT
27517707 TAGCTCA-ACTTTAGCTCACAAGCTAAAACT
1 TAGCTCATA-TTTAGCTCACAAGCTAAAACT
27517737 TAGCTCAT-TTTAG
1 TAGCTCATATTTAG
27517750 TTTAAACTCG
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
29 6 0.15
30 33 0.85
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.32
Consensus pattern (30 bp):
TAGCTCATATTTAGCTCACAAGCTAAAACT
Found at i:27533004 original size:24 final size:25
Alignment explanation
Indices: 27532951--27533004 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 25
27532941 AACAAATTCT
* *
27532951 TTTTTTCATTTTCATCACTCGTTTC
1 TTTTTTCATTTTAATCACTCGTCTC
27532976 -TTTTTC-TTTTGAATCACTC-TCTC
1 TTTTTTCATTTT-AATCACTCGTCTC
27532999 TTTTTT
1 TTTTTT
27533005 TATCACTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 7 0.28
24 18 0.72
ACGTcount: A:0.11, C:0.22, G:0.04, T:0.63
Consensus pattern (25 bp):
TTTTTTCATTTTAATCACTCGTCTC
Found at i:27535267 original size:28 final size:28
Alignment explanation
Indices: 27535236--27535290 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
27535226 TTTTTTCCTT
*
27535236 CTTTTTTTTCGGA-TTTTTTTTTTCGAAA
1 CTTTTTTTT-GAACTTTTTTTTTTCGAAA
*
27535264 CTTTTTTTTTAACTTTTTTTTTTCGAA
1 CTTTTTTTTGAACTTTTTTTTTTCGAA
27535291 GCTACGATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 1 0.04
28 23 0.96
ACGTcount: A:0.15, C:0.11, G:0.07, T:0.67
Consensus pattern (28 bp):
CTTTTTTTTGAACTTTTTTTTTTCGAAA
Found at i:27539058 original size:6 final size:6
Alignment explanation
Indices: 27539045--27539080 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
27539035 CAATTTTTTT
* *
27539045 TCTCAA TATCAA TATCAA TCTCAA TCTCAA TCTCAA
1 TCTCAA TCTCAA TCTCAA TCTCAA TCTCAA TCTCAA
27539081 ATTCTTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.39, C:0.28, G:0.00, T:0.33
Consensus pattern (6 bp):
TCTCAA
Found at i:27539131 original size:20 final size:20
Alignment explanation
Indices: 27539088--27539131 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
27539078 CAAATTCTTT
*
27539088 TTTCTTTTTCTCACTCTCAT
1 TTTCTTTTTCTCACTCTCAA
*
27539108 TTTCTTTTT-TCTTCTCTCAA
1 TTTCTTTTTCTC-ACTCTCAA
27539128 TTTC
1 TTTC
27539132 ATTCAAGATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.09, C:0.27, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTCTTTTTCTCACTCTCAA
Found at i:27539133 original size:26 final size:27
Alignment explanation
Indices: 27539069--27539134 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 27
27539059 TCAATCTCAA
** *
27539069 TCTCAATCTCAAATTCTTTTTTCTTTT
1 TCTCAATCTCATTTTCTTTTTTCTTTC
*
27539096 TCTCACTCTCATTTTCTTTTTTC-TTC
1 TCTCAATCTCATTTTCTTTTTTCTTTC
*
27539122 TCTCAATTTCATT
1 TCTCAATCTCATT
27539135 CAAGATTCGT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 13 0.39
27 20 0.61
ACGTcount: A:0.15, C:0.26, G:0.00, T:0.59
Consensus pattern (27 bp):
TCTCAATCTCATTTTCTTTTTTCTTTC
Found at i:27539977 original size:28 final size:29
Alignment explanation
Indices: 27539936--27540003 Score: 102
Period size: 28 Copynumber: 2.3 Consensus size: 29
27539926 TCAATCACTC
* *
27539936 TTTTTTTTTCAATTTTG-ATTTTTTTTCT
1 TTTTTTTTTTAATTTCGAATTTTTTTTCT
27539964 TTTTTTTTTTAATTTCGAATTTTTTTTCT
1 TTTTTTTTTTAATTTCGAATTTTTTTTCT
27539993 TCTTTTTTTTT
1 T-TTTTTTTTT
27540004 CTTCAATACT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 15 0.42
29 12 0.33
30 9 0.25
ACGTcount: A:0.10, C:0.07, G:0.03, T:0.79
Consensus pattern (29 bp):
TTTTTTTTTTAATTTCGAATTTTTTTTCT
Found at i:27540007 original size:13 final size:13
Alignment explanation
Indices: 27539983--27540007 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27539973 TAATTTCGAA
27539983 TTTTTTTTCTTCT
1 TTTTTTTTCTTCT
27539996 TTTTTTTTCTTC
1 TTTTTTTTCTTC
27540008 AATACTAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTTTTTCTTCT
Found at i:27540103 original size:12 final size:12
Alignment explanation
Indices: 27540048--27540093 Score: 65
Period size: 12 Copynumber: 3.7 Consensus size: 12
27540038 GAATACAAAC
27540048 TTTTTTTTTGAA
1 TTTTTTTTTGAA
*
27540060 TTTTTTTTTCAAAA
1 TTTTTTTTT--GAA
27540074 TTTTTTTTTGAA
1 TTTTTTTTTGAA
27540086 TTTTTTTT
1 TTTTTTTT
27540094 ATATTTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 19 0.63
14 11 0.37
ACGTcount: A:0.17, C:0.02, G:0.04, T:0.76
Consensus pattern (12 bp):
TTTTTTTTTGAA
Found at i:27540103 original size:26 final size:26
Alignment explanation
Indices: 27540043--27540093 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
27540033 AAATTGAATA
*
27540043 CAAACTTTTTTTTTGAATTTTTTTTT
1 CAAAATTTTTTTTTGAATTTTTTTTT
27540069 CAAAATTTTTTTTTGAATTTTTTTT
1 CAAAATTTTTTTTTGAATTTTTTTT
27540094 ATATTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.22, C:0.06, G:0.04, T:0.69
Consensus pattern (26 bp):
CAAAATTTTTTTTTGAATTTTTTTTT
Found at i:27541732 original size:13 final size:13
Alignment explanation
Indices: 27541714--27541738 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27541704 GTATTAATCA
27541714 TGTGTTCACACCT
1 TGTGTTCACACCT
27541727 TGTGTTCACACC
1 TGTGTTCACACC
27541739 ATGATGACCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTGTTCACACCT
Found at i:27542798 original size:11 final size:12
Alignment explanation
Indices: 27542782--27542868 Score: 54
Period size: 13 Copynumber: 6.8 Consensus size: 12
27542772 TGGAGTAACA
27542782 AAAAAAAAATC-
1 AAAAAAAAATCG
*
27542793 AAAAAAAATTCG
1 AAAAAAAAATCG
*
27542805 AAAAAAAAATTGATTG
1 -AAAAAAAA---ATCG
27542821 AAAAAAAAATTC-
1 AAAAAAAAA-TCG
27542833 AAAAAAAAAGT-G
1 AAAAAAAAA-TCG
27542845 AAAAAAAAAATCG
1 -AAAAAAAAATCG
27542858 AGCAAAAAAAA
1 A--AAAAAAAA
27542869 AAAAGGTGAC
Statistics
Matches: 60, Mismatches: 5, Indels: 19
0.71 0.06 0.23
Matches are distributed among these distances:
11 10 0.17
12 13 0.22
13 19 0.32
14 8 0.13
15 8 0.13
16 2 0.03
ACGTcount: A:0.74, C:0.06, G:0.08, T:0.13
Consensus pattern (12 bp):
AAAAAAAAATCG
Found at i:27542809 original size:13 final size:13
Alignment explanation
Indices: 27542781--27542868 Score: 67
Period size: 12 Copynumber: 6.7 Consensus size: 13
27542771 TTGGAGTAAC
*
27542781 AAAAAAAAAATC-
1 AAAAAAAAATTCG
27542793 -AAAAAAAATTCG
1 AAAAAAAAATTCG
*
27542805 AAAAAAAAATTGATTG
1 AAAAAAAAA-T--TCG
27542821 AAAAAAAAATTC-
1 AAAAAAAAATTCG
*
27542833 AAAAAAAAAGT-G
1 AAAAAAAAATTCG
*
27542845 AAAAAAAAAATCG
1 AAAAAAAAATTCG
27542858 AGCAAAAAAAA
1 A--AAAAAAAA
27542869 AAAAGGTGAC
Statistics
Matches: 62, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
11 10 0.16
12 20 0.32
13 11 0.18
14 1 0.02
15 9 0.15
16 11 0.18
ACGTcount: A:0.74, C:0.06, G:0.08, T:0.12
Consensus pattern (13 bp):
AAAAAAAAATTCG
Found at i:27542865 original size:40 final size:40
Alignment explanation
Indices: 27542780--27542870 Score: 107
Period size: 40 Copynumber: 2.3 Consensus size: 40
27542770 ATTGGAGTAA
* *
27542780 CAAAAAAAAAATCAAAAAAAATTCGAAAAAAAAATTGATTG
1 CAAAAAAAAAATCAAAAAAAAGTCGAAAAAAAAATCGA-TG
*
27542821 -AAAAAAAAATTCAAAAAAAAAGT-GAAAAAAAAAATCGA-G
1 CAAAAAAAAAATC-AAAAAAAAGTCG-AAAAAAAAATCGATG
27542860 CAAAAAAAAAA
1 CAAAAAAAAAA
27542871 AAGGTGACCA
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
39 1 0.02
40 21 0.49
41 21 0.49
ACGTcount: A:0.74, C:0.07, G:0.08, T:0.12
Consensus pattern (40 bp):
CAAAAAAAAAATCAAAAAAAAGTCGAAAAAAAAATCGATG
Found at i:27542900 original size:34 final size:31
Alignment explanation
Indices: 27542833--27542902 Score: 86
Period size: 34 Copynumber: 2.2 Consensus size: 31
27542823 AAAAAAATTC
*
27542833 AAAAAAAAAGTGAAAAAAAAAATCGAGCAAA
1 AAAAAAAAAGTGAAAAAAAAAATCAAGCAAA
**
27542864 AAAAAAAAAGGTGACCAAAAAAAAATCAAGTTAA
1 AAAAAAAAA-GTGA--AAAAAAAAATCAAGCAAA
27542898 AAAAA
1 AAAAA
27542903 GTGAAAAGTC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
31 9 0.27
32 4 0.12
34 20 0.61
ACGTcount: A:0.73, C:0.07, G:0.11, T:0.09
Consensus pattern (31 bp):
AAAAAAAAAGTGAAAAAAAAAATCAAGCAAA
Found at i:27543962 original size:17 final size:18
Alignment explanation
Indices: 27543930--27543963 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
27543920 AAAAGAGAGT
*
27543930 GAGATTGAAGGAAGAAAC
1 GAGAGTGAAGGAAGAAAC
27543948 GAGAGTGAA-GAAGAAA
1 GAGAGTGAAGGAAGAAA
27543964 GGAGTATTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.53, C:0.03, G:0.35, T:0.09
Consensus pattern (18 bp):
GAGAGTGAAGGAAGAAAC
Found at i:27545809 original size:13 final size:13
Alignment explanation
Indices: 27545791--27545815 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27545781 GTATTGATCA
27545791 TGTGTTCACACCT
1 TGTGTTCACACCT
27545804 TGTGTTCACACC
1 TGTGTTCACACC
27545816 ATGATGACCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTGTTCACACCT
Found at i:27548169 original size:33 final size:34
Alignment explanation
Indices: 27548129--27548194 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 34
27548119 TATTGGATTT
* * *
27548129 AAAAAAAGAAGAAGAAGAAAT-TCAAAAAAAATA
1 AAAAAAAGAAAAAAAAGAAATGACAAAAAAAATA
*
27548162 AAAAAAAGAAAAAAAAGAAGTGACAAAAAAAAT
1 AAAAAAAGAAAAAAAAGAAATGACAAAAAAAAT
27548195 CGAGTTAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 18 0.64
34 10 0.36
ACGTcount: A:0.77, C:0.03, G:0.12, T:0.08
Consensus pattern (34 bp):
AAAAAAAGAAAAAAAAGAAATGACAAAAAAAATA
Found at i:27548231 original size:12 final size:10
Alignment explanation
Indices: 27548201--27548225 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
27548191 AAATCGAGTT
27548201 AAAAGAAAAA
1 AAAAGAAAAA
27548211 AAAAGAAAAA
1 AAAAGAAAAA
27548221 AAAAG
1 AAAAG
27548226 TGAAAAGTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (10 bp):
AAAAGAAAAA
Found at i:27550347 original size:12 final size:12
Alignment explanation
Indices: 27550330--27550387 Score: 64
Period size: 12 Copynumber: 4.6 Consensus size: 12
27550320 TTGGAGTAAC
27550330 AAAAAAA-TCAA
1 AAAAAAATTCAA
27550341 AAAAAAATTCGAA
1 AAAAAAATTC-AA
*
27550354 AAAAAATTGATTGAA
1 AAAAAA---ATTCAA
27550369 AAAAAAATTCAA
1 AAAAAAATTCAA
27550381 AAAAAAA
1 AAAAAAA
27550388 AGTGAAAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
11 7 0.17
12 14 0.35
13 8 0.20
15 8 0.20
16 3 0.08
ACGTcount: A:0.74, C:0.05, G:0.05, T:0.16
Consensus pattern (12 bp):
AAAAAAATTCAA
Found at i:27550398 original size:28 final size:28
Alignment explanation
Indices: 27550339--27550399 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
27550329 CAAAAAAATC
* * **
27550339 AAAAAAAAATTCGAAAAAAAATTGATTG
1 AAAAAAAAATTCAAAAAAAAAGTGATAA
27550367 AAAAAAAAATTCAAAAAAAAAAGTGA-AA
1 AAAAAAAAATTC-AAAAAAAAAGTGATAA
27550395 AAAAA
1 AAAAA
27550400 TCGAGCAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 17 0.61
29 11 0.39
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.15
Consensus pattern (28 bp):
AAAAAAAAATTCAAAAAAAAAGTGATAA
Found at i:27550438 original size:29 final size:26
Alignment explanation
Indices: 27550380--27550450 Score: 88
Period size: 26 Copynumber: 2.6 Consensus size: 26
27550370 AAAAAATTCA
*
27550380 AAAAAAAAAGTGAAAAAAAATCGAGC
1 AAAAAAAAAGTGAAAAAAAATCAAGC
* *
27550406 AAAAAAAAGGTGACCAAAAAAATCAAGTT
1 AAAAAAAAAGTGA--AAAAAAATCAAG-C
27550435 AAAAAAAAAGTGAAAA
1 AAAAAAAAAGTGAAAA
27550451 GTCTTGCGAG
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
26 12 0.32
27 3 0.08
28 11 0.29
29 12 0.32
ACGTcount: A:0.69, C:0.07, G:0.14, T:0.10
Consensus pattern (26 bp):
AAAAAAAAAGTGAAAAAAAATCAAGC
Found at i:27551343 original size:18 final size:18
Alignment explanation
Indices: 27551322--27551356 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
27551312 AGAAAAGAAA
27551322 ATTGA-AAAAGAAATTGAG
1 ATTGAGAAAA-AAATTGAG
27551340 ATTGAGAAAAAAATTGA
1 ATTGAGAAAAAAATTGA
27551357 AAAAGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (18 bp):
ATTGAGAAAAAAATTGAG
Found at i:27555190 original size:17 final size:18
Alignment explanation
Indices: 27555158--27555191 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
27555148 AGAAAAGAAA
27555158 ATTGAAAAAGAAATTGAG
1 ATTGAAAAAGAAATTGAG
*
27555176 ATTGAGAAA-AAATTGA
1 ATTGAAAAAGAAATTGA
27555192 AAAAGAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.56, C:0.00, G:0.21, T:0.24
Consensus pattern (18 bp):
ATTGAAAAAGAAATTGAG
Found at i:27555209 original size:29 final size:30
Alignment explanation
Indices: 27555155--27555218 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 30
27555145 TGAAGAAAAG
**
27555155 AAAATTGAAAAAGAAATTGAGATTG-AGAA
1 AAAATTGAAAAAGAAAAAGAGATTGAAGAA
27555184 AAAATTGAAAAAGAAAAAGATG-TTGAAGAA
1 AAAATTGAAAAAGAAAAAGA-GATTGAAGAA
*
27555214 GAAAT
1 AAAAT
27555219 GAGAGAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 21 0.70
30 9 0.30
ACGTcount: A:0.61, C:0.00, G:0.20, T:0.19
Consensus pattern (30 bp):
AAAATTGAAAAAGAAAAAGAGATTGAAGAA
Found at i:27560929 original size:11 final size:13
Alignment explanation
Indices: 27560913--27561000 Score: 51
Period size: 12 Copynumber: 6.5 Consensus size: 13
27560903 TTGGAGTAAC
27560913 AAAAAAA-TC-AA
1 AAAAAAATTCGAA
27560924 AAAAAAATTCGAAA
1 AAAAAAATTCG-AA
*
27560938 AAAAAAATTTTGATTGAA
1 AAAAAAA---T--TCGAA
27560956 AAAAAAATTC-AA
1 AAAAAAATTCGAA
*
27560968 AAAAAAAGT-GAA
1 AAAAAAATTCGAA
27560980 AAAAAAA-TCGAGCA
1 AAAAAAATTCGA--A
27560994 AAAAAAA
1 AAAAAAA
27561001 GAAAAGAAAA
Statistics
Matches: 62, Mismatches: 3, Indels: 21
0.72 0.03 0.24
Matches are distributed among these distances:
11 8 0.13
12 23 0.37
13 1 0.02
14 17 0.27
15 1 0.02
17 1 0.02
18 9 0.15
19 2 0.03
ACGTcount: A:0.72, C:0.06, G:0.08, T:0.15
Consensus pattern (13 bp):
AAAAAAATTCGAA
Found at i:27560930 original size:12 final size:13
Alignment explanation
Indices: 27560913--27560945 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
27560903 TTGGAGTAAC
27560913 AAAAAAATC-AAA
1 AAAAAAATCGAAA
*
27560925 AAAAAATTCGAAA
1 AAAAAAATCGAAA
27560938 AAAAAAAT
1 AAAAAAAT
27560946 TTTGATTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 8 0.44
13 10 0.56
ACGTcount: A:0.79, C:0.06, G:0.03, T:0.12
Consensus pattern (13 bp):
AAAAAAATCGAAA
Found at i:27560997 original size:28 final size:27
Alignment explanation
Indices: 27560966--27561030 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 27
27560956 AAAAAAATTC
**
27560966 AAAAAAAAAGTGAAAAAAAAATCGAGCA
1 AAAAAAAAAAAGAAAAAAAAAT-GAGCA
**
27560994 AAAAAAAGAAAAGAAAAAAAGGTGAGCA
1 AAAAAAA-AAAAGAAAAAAAAATGAGCA
27561022 AAAAAAAAA
1 AAAAAAAAA
27561031 TCAAGTTTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
27 2 0.06
28 19 0.59
29 11 0.34
ACGTcount: A:0.75, C:0.05, G:0.15, T:0.05
Consensus pattern (27 bp):
AAAAAAAAAAAGAAAAAAAAATGAGCA
Found at i:27562061 original size:6 final size:6
Alignment explanation
Indices: 27562033--27562172 Score: 55
Period size: 6 Copynumber: 22.3 Consensus size: 6
27562023 CCATTGAGCG
* * * * * * *
27562033 AGAAAA GGAGAA AGAAAT TGAAAA AGAAAT TGAAAGA AAACAAA AAGAAAA
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAA-A AGA-AAA A-GAAAA
* * * * * * * ** *
27562084 CGAAGA AGAAAA AGAAAT TGCAAA AGAAAA AGAAAT CGAAAA AGTGAG
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA
* *
27562132 AGAAAA AGAAAA TGAAGAAA AGAAAA TTGAAAA AGAAAA AG
1 AGAAAA AGAAAA AG-A-AAA AGAAAA -AGAAAA AGAAAA AG
27562173 CGAAAAAAGA
Statistics
Matches: 90, Mismatches: 38, Indels: 12
0.64 0.27 0.09
Matches are distributed among these distances:
6 70 0.78
7 13 0.14
8 7 0.08
ACGTcount: A:0.69, C:0.03, G:0.21, T:0.08
Consensus pattern (6 bp):
AGAAAA
Found at i:27562081 original size:11 final size:12
Alignment explanation
Indices: 27562065--27562184 Score: 66
Period size: 12 Copynumber: 9.6 Consensus size: 12
27562055 AAAGAAATTG
27562065 AAAGAAAAC-AA
1 AAAGAAAACGAA
27562076 AAAGAAAACGAA
1 AAAGAAAACGAA
* *
27562088 GAAGAAAAAGAA
1 AAAGAAAACGAA
**
27562100 ATTGCAAAA-GAA
1 AAAG-AAAACGAA
*
27562112 AAAGAAATCGAA
1 AAAGAAAACGAA
* *
27562124 AAAGTGAGA-GAA
1 AAAG-AAAACGAA
*
27562136 AAAGAAAATGAAGA
1 AAAGAAAACG-A-A
*
27562150 AAAGAAAATTGAA
1 AAAGAAAA-CGAA
27562163 AAAGAAAAAGCGAAA
1 AAAG-AAAA-CG-AA
27562178 AAAGAAA
1 AAAGAAA
27562185 TTGAAAGAGA
Statistics
Matches: 84, Mismatches: 15, Indels: 17
0.72 0.13 0.15
Matches are distributed among these distances:
11 14 0.17
12 33 0.39
13 11 0.13
14 18 0.21
15 8 0.10
ACGTcount: A:0.71, C:0.04, G:0.19, T:0.06
Consensus pattern (12 bp):
AAAGAAAACGAA
Found at i:27562126 original size:18 final size:18
Alignment explanation
Indices: 27562043--27562127 Score: 77
Period size: 18 Copynumber: 4.9 Consensus size: 18
27562033 AGAAAAGGAG
*
27562043 AAAGAAATTGAAAAAGAA
1 AAAGAAATCGAAAAAGAA
** *
27562061 ATTGAAA--G-AAAACAA
1 AAAGAAATCGAAAAAGAA
* *
27562076 AAAGAAAACGAAGAAGAA
1 AAAGAAATCGAAAAAGAA
* *
27562094 AAAGAAATTGCAAAAGAA
1 AAAGAAATCGAAAAAGAA
27562112 AAAGAAATCGAAAAAG
1 AAAGAAATCGAAAAAG
27562128 TGAGAGAAAA
Statistics
Matches: 51, Mismatches: 13, Indels: 6
0.73 0.19 0.09
Matches are distributed among these distances:
15 11 0.22
16 1 0.02
17 1 0.02
18 38 0.75
ACGTcount: A:0.69, C:0.05, G:0.18, T:0.08
Consensus pattern (18 bp):
AAAGAAATCGAAAAAGAA
Found at i:27562154 original size:14 final size:13
Alignment explanation
Indices: 27562133--27562170 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
27562123 AAAAGTGAGA
27562133 GAAAAAGAAAA-T
1 GAAAAAGAAAATT
27562145 GAAGAAAAGAAAATT
1 G-A-AAAAGAAAATT
27562160 GAAAAAGAAAA
1 GAAAAAGAAAA
27562171 AGCGAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 1 0.04
13 10 0.43
14 10 0.43
15 2 0.09
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (13 bp):
GAAAAAGAAAATT
Found at i:27562184 original size:21 final size:21
Alignment explanation
Indices: 27562134--27562184 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
27562124 AAAGTGAGAG
*
27562134 AAAAAGAAAATGAAGAAAAGA
1 AAAAAGAAAAAGAAGAAAAGA
** *
27562155 AAATTGAAAAAGAA-AAAGCGA
1 AAAAAGAAAAAGAAGAAA-AGA
27562176 AAAAAGAAA
1 AAAAAGAAA
27562185 TTGAAAGAGA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.06
Consensus pattern (21 bp):
AAAAAGAAAAAGAAGAAAAGA
Found at i:27562188 original size:27 final size:27
Alignment explanation
Indices: 27562086--27562190 Score: 77
Period size: 27 Copynumber: 3.8 Consensus size: 27
27562076 AAAGAAAACG
* *
27562086 AAGAAGAAAAAGAAATTGCAAAAGAAA
1 AAGAAGAAAAAAAAATTGAAAAAGAAA
*** **
27562113 AAGAAATCGAAAAAGTGAGAGAAAAAGAAA
1 AAG-AA--GAAAAAAAAATTGAAAAAGAAA
* *
27562143 ATGAAGAAAAGAAAATTGAAAAAGAAA
1 AAGAAGAAAAAAAAATTGAAAAAGAAA
*
27562170 AAG-CGAAAAAAGAAATTGAAA
1 AAGAAGAAAAAA-AAATTGAAA
27562191 GAGAGCTTGA
Statistics
Matches: 59, Mismatches: 15, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
26 6 0.10
27 30 0.51
28 2 0.03
29 2 0.03
30 19 0.32
ACGTcount: A:0.69, C:0.03, G:0.20, T:0.09
Consensus pattern (27 bp):
AAGAAGAAAAAAAAATTGAAAAAGAAA
Found at i:27566072 original size:20 final size:20
Alignment explanation
Indices: 27566049--27566094 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
27566039 CCAGCTCGAA
*
27566049 TTAGCTCACATGAGCTTAAT
1 TTAGCTCACATGAGCTCAAT
***
27566069 TTAGCTCGTTTGAGCTCAAT
1 TTAGCTCACATGAGCTCAAT
27566089 TTAGCT
1 TTAGCT
27566095 TACTTTAGCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (20 bp):
TTAGCTCACATGAGCTCAAT
Found at i:27566076 original size:30 final size:30
Alignment explanation
Indices: 27566041--27566114 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 30
27566031 AGTTTTTCCC
27566041 AGCTCGAATT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-ATTGAGCTCA-ATTGAGCTTAATTT
* * *
27566071 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGATTGAGCTCAATTGAGCTTAATTT
*
27566101 AGCTCGTTTGAGCT
1 AGCTCGATTGAGCT
27566115 TGGCTTAAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
29 3 0.08
30 36 0.92
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (30 bp):
AGCTCGATTGAGCTCAATTGAGCTTAATTT
Found at i:27577369 original size:13 final size:12
Alignment explanation
Indices: 27577342--27577397 Score: 67
Period size: 12 Copynumber: 4.6 Consensus size: 12
27577332 CGGTATTGTC
*
27577342 AAAAATAATTTA
1 AAAAAAAATTTA
27577354 AAAAAAAATTTGA
1 AAAAAAAATTT-A
* *
27577367 AAAAAAAAATTC
1 AAAAAAAATTTA
*
27577379 AAAAAAAATTCA
1 AAAAAAAATTTA
27577391 AAAAAAA
1 AAAAAAA
27577398 GTTTGTATTC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
12 26 0.70
13 11 0.30
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.20
Consensus pattern (12 bp):
AAAAAAAATTTA
Found at i:27577370 original size:14 final size:13
Alignment explanation
Indices: 27577342--27577397 Score: 62
Period size: 13 Copynumber: 4.5 Consensus size: 13
27577332 CGGTATTGTC
* *
27577342 AAAAATAATTTAA
1 AAAAAAAATTCAA
* *
27577355 AAAAAAATTTGAA
1 AAAAAAAATTCAA
27577368 AAAAAAAATTC--
1 AAAAAAAATTCAA
27577379 AAAAAAAATTCAA
1 AAAAAAAATTCAA
27577392 AAAAAA
1 AAAAAA
27577398 GTTTGTATTC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
11 11 0.31
13 25 0.69
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.20
Consensus pattern (13 bp):
AAAAAAAATTCAA
Found at i:27577382 original size:11 final size:11
Alignment explanation
Indices: 27577368--27577397 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
27577358 AAAATTTGAA
27577368 AAAAAAAATTC
1 AAAAAAAATTC
27577379 AAAAAAAATTC
1 AAAAAAAATTC
27577390 AAAAAAAA
1 AAAAAAAA
27577398 GTTTGTATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.80, C:0.07, G:0.00, T:0.13
Consensus pattern (11 bp):
AAAAAAAATTC
Found at i:27577484 original size:26 final size:27
Alignment explanation
Indices: 27577443--27577506 Score: 85
Period size: 27 Copynumber: 2.3 Consensus size: 27
27577433 GTATTGAAGA
*
27577443 AAAAAAAAGAATAAAAAAAATTCGGAATT-
1 AAAAAAAAG-A-AAAAAAAA-TCGAAATTG
27577472 AAAAAAAAGAAAAAAAAATCGAAATTG
1 AAAAAAAAGAAAAAAAAATCGAAATTG
27577499 AAAAAAAA
1 AAAAAAAA
27577507 AAGAGTGATT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
26 7 0.21
27 16 0.48
28 1 0.03
29 9 0.27
ACGTcount: A:0.75, C:0.03, G:0.09, T:0.12
Consensus pattern (27 bp):
AAAAAAAAGAAAAAAAAATCGAAATTG
Found at i:27577510 original size:29 final size:29
Alignment explanation
Indices: 27577442--27577507 Score: 84
Period size: 28 Copynumber: 2.3 Consensus size: 29
27577432 AGTATTGAAG
*
27577442 AAAAAAAAAGAATAAAAAAAATTCGGAATT
1 AAAAAAAAAG-ATAAAAAAAATTCGAAATT
27577472 -AAAAAAAAGA-AAAAAAAA-TCGAAATT
1 AAAAAAAAAGATAAAAAAAATTCGAAATT
27577498 GAAAAAAAAA
1 -AAAAAAAAA
27577508 AGAGTGATTG
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
26 7 0.21
27 8 0.24
28 9 0.27
29 9 0.27
ACGTcount: A:0.76, C:0.03, G:0.09, T:0.12
Consensus pattern (29 bp):
AAAAAAAAAGATAAAAAAAATTCGAAATT
Found at i:27579307 original size:4 final size:4
Alignment explanation
Indices: 27579298--27579331 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
27579288 AAGTTTTATT
27579298 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
27579332 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:27579339 original size:22 final size:22
Alignment explanation
Indices: 27579281--27579340 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
27579271 AAGTGGCCCA
*
27579281 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
27579305 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
27579326 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
27579341 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:27581692 original size:18 final size:18
Alignment explanation
Indices: 27581671--27581709 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
27581661 GATTGAGAGT
* *
27581671 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
*
27581689 GAAAAGAAATTTGAAAAA
1 GAAAAGAAATGTGAAAAA
27581707 GAA
1 GAA
27581710 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.23, T:0.13
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:27583125 original size:18 final size:18
Alignment explanation
Indices: 27583102--27583137 Score: 56
Period size: 17 Copynumber: 2.0 Consensus size: 18
27583092 GTTGTAAAGT
27583102 TTTATTTTTATTTA-TTTA
1 TTTA-TTTTATTTAGTTTA
27583120 TTTATTTTATTTAGTTTA
1 TTTATTTTATTTAGTTTA
27583138 AATTTTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (18 bp):
TTTATTTTATTTAGTTTA
Found at i:27584341 original size:20 final size:20
Alignment explanation
Indices: 27584318--27584364 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
27584308 GGGTTAAGAT
*
27584318 TGAGCTGAATTGAGCTTGAA
1 TGAGCTGAATTGAGCTCGAA
* * *
27584338 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAA
27584358 TGAGCTG
1 TGAGCTG
27584365 GAAACGAGCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAA
Found at i:27586090 original size:48 final size:48
Alignment explanation
Indices: 27586035--27586140 Score: 137
Period size: 48 Copynumber: 2.2 Consensus size: 48
27586025 TTGTCTTTTC
*
27586035 TTTCTTTTTCAATTT-TCTCT-TTTTCCTCACA-CTTTTGTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTT--TCACATCCTTT-TTCAATCTCAA
* *
27586083 TTTCTTTTTCGATTTCTTTCTCTTTTTCACATCCTTTTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
27586131 TTTCTTTTTC
1 TTTCTTTTTC
27586141 CATGACACTC
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.14, C:0.25, G:0.02, T:0.59
Consensus pattern (48 bp):
TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
Found at i:27586198 original size:18 final size:17
Alignment explanation
Indices: 27586116--27586198 Score: 58
Period size: 18 Copynumber: 4.5 Consensus size: 17
27586106 TTTTCACATC
27586116 CTTTTTCAATCTCAATTT
1 CTTTTTCAATCTC-ATTT
* *
27586134 CTTTTTCCATGACACTCGTTT
1 CTTTTT-CA--A-TCTCATTT
* * *
27586155 CTTTTACACTCTCGTTT
1 CTTTTTCAATCTCATTT
27586172 CTTTCTTCAATCTCATTCT
1 CTTT-TTCAATCTCATT-T
27586191 CTTTTTCA
1 CTTTTTCA
27586199 TTTCTTATTC
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
17 11 0.22
18 19 0.37
19 7 0.14
20 2 0.04
21 9 0.18
22 3 0.06
ACGTcount: A:0.16, C:0.28, G:0.04, T:0.53
Consensus pattern (17 bp):
CTTTTTCAATCTCATTT
Found at i:27587201 original size:13 final size:13
Alignment explanation
Indices: 27587185--27587242 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
27587175 TTAACTTGAT
27587185 TTTTTTTGCTCAC
1 TTTTTTTGCTCAC
* **
27587198 TTTTTTTTCTTTC
1 TTTTTTTGCTCAC
27587211 TTTTTTTTGCTCGA-
1 -TTTTTTTGCTC-AC
27587225 TTTTTTT--TCAC
1 TTTTTTTGCTCAC
27587236 TTTTTTT
1 TTTTTTT
27587243 TGAATTTTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
10 1 0.03
11 9 0.25
13 17 0.47
14 9 0.25
ACGTcount: A:0.05, C:0.16, G:0.05, T:0.74
Consensus pattern (13 bp):
TTTTTTTGCTCAC
Found at i:27587241 original size:27 final size:28
Alignment explanation
Indices: 27587164--27587243 Score: 85
Period size: 27 Copynumber: 2.9 Consensus size: 28
27587154 GCAAGACTTT
*
27587164 TCACTTTTTTTTTAACTTGATTTTTTTTGC
1 TCAC-TTTTTTTTCACTT-ATTTTTTTTGC
* *
27587194 TCACTTTTTTTTC-TTTCTTTTTTTTGC
1 TCACTTTTTTTTCACTTATTTTTTTTGC
27587221 TCGA-TTTTTTTTCACTT-TTTTTT
1 TC-ACTTTTTTTTCACTTATTTTTT
27587244 GAATTTTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
27 27 0.61
28 5 0.11
29 8 0.18
30 4 0.09
ACGTcount: A:0.09, C:0.15, G:0.05, T:0.71
Consensus pattern (28 bp):
TCACTTTTTTTTCACTTATTTTTTTTGC
Found at i:27587250 original size:10 final size:11
Alignment explanation
Indices: 27587224--27587260 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
27587214 TTTTTGCTCG
*
27587224 ATTTTTTTTCA
1 ATTTTTTTTGA
*
27587235 CTTTTTTTTGA
1 ATTTTTTTTGA
27587246 ATTTTTTTTGA
1 ATTTTTTTTGA
27587257 ATTT
1 ATTT
27587261 CGATTTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.16, C:0.05, G:0.05, T:0.73
Consensus pattern (11 bp):
ATTTTTTTTGA
Found at i:27588770 original size:20 final size:20
Alignment explanation
Indices: 27588747--27588793 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
27588737 GGGTTAAGAT
*
27588747 TGAGCTGAATTGAGCTTGAA
1 TGAGCTGAATTGAGCTCGAA
* * *
27588767 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAA
27588787 TGAGCTG
1 TGAGCTG
27588794 GAAACGAGCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAA
Found at i:27589032 original size:17 final size:15
Alignment explanation
Indices: 27589012--27589050 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 15
27589002 GCGAGCGAGA
27589012 AAATGAACATGAAAAAG
1 AAATGAA-A-GAAAAAG
27589029 AAATGAAAGAAAAAG
1 AAATGAAAGAAAAAG
27589044 AAGATGA
1 AA-ATGA
27589051 GTGGGAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 9 0.43
16 5 0.24
17 7 0.33
ACGTcount: A:0.67, C:0.03, G:0.21, T:0.10
Consensus pattern (15 bp):
AAATGAAAGAAAAAG
Found at i:27607847 original size:13 final size:13
Alignment explanation
Indices: 27607829--27607876 Score: 69
Period size: 13 Copynumber: 3.7 Consensus size: 13
27607819 ATTTTATTCT
27607829 TCAAAAGCACTTC
1 TCAAAAGCACTTC
27607842 TCAAAAGCACTTC
1 TCAAAAGCACTTC
* * *
27607855 TCCACAGCACTTT
1 TCAAAAGCACTTC
27607868 TCAAAAGCA
1 TCAAAAGCA
27607877 ATGAAGAACT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.38, C:0.31, G:0.08, T:0.23
Consensus pattern (13 bp):
TCAAAAGCACTTC
Found at i:27612822 original size:20 final size:20
Alignment explanation
Indices: 27612775--27612822 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
27612765 AGTAAGCTCG
27612775 GTTGAGCTCAAACGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
**** *
27612795 AACAAGCTCAAATGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
27612815 GTTGAGCT
1 GTTGAGCT
27612823 GGACGGTGCT
Statistics
Matches: 19, Mismatches: 9, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (20 bp):
GTTGAGCTCAAACGAGCTGA
Found at i:27613495 original size:12 final size:12
Alignment explanation
Indices: 27613480--27613576 Score: 77
Period size: 12 Copynumber: 7.8 Consensus size: 12
27613470 AATTGCAAAA
*
27613480 GAAAAAGAAATC
1 GAAAAAGAAATT
** **
27613492 GAAAAAGTGAGA
1 GAAAAAGAAATT
*
27613504 GAAAAAGAAAAT
1 GAAAAAGAAATT
27613516 GAAGAAAAGAAAATT
1 G-A-AAAAG-AAATT
*
27613531 GAAAAGGAAATT
1 GAAAAAGAAATT
** *
27613543 GAAATTGAGATT
1 GAAAAAGAAATT
27613555 GAAAAAGAAATT
1 GAAAAAGAAATT
27613567 GAAAAAGAAA
1 GAAAAAGAAA
27613577 AAGATGTTGA
Statistics
Matches: 66, Mismatches: 16, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
12 50 0.76
13 5 0.08
14 6 0.09
15 5 0.08
ACGTcount: A:0.64, C:0.01, G:0.22, T:0.13
Consensus pattern (12 bp):
GAAAAAGAAATT
Found at i:27613497 original size:18 final size:18
Alignment explanation
Indices: 27613457--27613594 Score: 105
Period size: 18 Copynumber: 7.5 Consensus size: 18
27613447 AAAGAAAACA
27613457 AAAAAGAAAAAGAAATTG
1 AAAAAGAAAAAGAAATTG
* *
27613475 CAAAAGAAAAAGAAATCG
1 AAAAAGAAAAAGAAATTG
** * **
27613493 AAAAAGTGAGAGAAAAAG
1 AAAAAGAAAAAGAAATTG
*
27613511 AAAATGAAGAAAAGAAAATTG
1 AAAAAG-A-AAAAG-AAATTG
* **
27613532 AAAAGGAAATTGAAATTG
1 AAAAAGAAAAAGAAATTG
* **
27613550 AGATTGAAAAAGAAATTG
1 AAAAAGAAAAAGAAATTG
**
27613568 AAAAAGAAAAAGATGTTG
1 AAAAAGAAAAAGAAATTG
27613586 AAAAAGAAA
1 AAAAAGAAA
27613595 CGAGAGAAAA
Statistics
Matches: 90, Mismatches: 27, Indels: 6
0.73 0.22 0.05
Matches are distributed among these distances:
18 74 0.82
19 3 0.03
20 4 0.04
21 9 0.10
ACGTcount: A:0.65, C:0.01, G:0.20, T:0.13
Consensus pattern (18 bp):
AAAAAGAAAAAGAAATTG
Found at i:27615678 original size:21 final size:23
Alignment explanation
Indices: 27615633--27615679 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
27615623 TCACCTGCAA
* *
27615633 TAAACACATTAAAATGAGTTTAT
1 TAAACACATTAAAATCAGCTTAT
27615656 TAAACACATTAAAA-CA-CTTAT
1 TAAACACATTAAAATCAGCTTAT
27615677 TAA
1 TAA
27615680 TCATAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 1 0.05
23 14 0.64
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (23 bp):
TAAACACATTAAAATCAGCTTAT
Found at i:27617184 original size:20 final size:20
Alignment explanation
Indices: 27617161--27617207 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
27617151 GGGTTAAGAT
*
27617161 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
27617181 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
27617201 TGAGCTG
1 TGAGCTG
27617208 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:27619558 original size:30 final size:30
Alignment explanation
Indices: 27619522--27619606 Score: 116
Period size: 30 Copynumber: 2.8 Consensus size: 30
27619512 TAAACTAAAA
*
27619522 TGAGCTAAGTTTTAGCTCGTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTAAGCTGAAGT
* * * *
27619552 TGAGCTAAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTAAGCTGAAGT
*
27619582 TGAGCTAAGGTTTAGCTCGTGAGCT
1 TGAGCTAAGGTTTAGCTCGTAAGCT
27619607 AAATATGAGC
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTAAGCTGAAGT
Found at i:27619616 original size:30 final size:30
Alignment explanation
Indices: 27619522--27619618 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
27619512 TAAACTAAAA
* *
27619522 TGAGCTAAGTTTTAGCTCGTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTAAGCTGAAAT
* * * * *
27619552 TGAGCTAAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTAAGCTGAAAT
*
27619582 TGAGCTAAGGTTTAGCTCGTGAGCT-AAAT
1 TGAGCTAAGGTTTAGCTCGTAAGCTGAAAT
27619611 ATGAGCTA
1 -TGAGCTA
27619619 GGAGTGAGCT
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
29 3 0.05
30 52 0.95
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTAAGCTGAAAT
Found at i:27620731 original size:48 final size:48
Alignment explanation
Indices: 27620679--27620784 Score: 137
Period size: 48 Copynumber: 2.2 Consensus size: 48
27620669 TTGTCTTTTC
*
27620679 TTTCTTTTTCAATTT-TCTCT-TTTTCCTCACA-CTTTTGTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTT--TCACATCCTTT-TTCAATCTCAA
* *
27620727 TTTCTTTTTCGATTTCTTTCTCTTTTTCACATCCTTTTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
27620775 TTTCTTTTTC
1 TTTCTTTTTC
27620785 CATGACACTC
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.14, C:0.25, G:0.02, T:0.59
Consensus pattern (48 bp):
TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
Found at i:27623437 original size:20 final size:20
Alignment explanation
Indices: 27623414--27623460 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
27623404 GGGTTAAGAT
* *
27623414 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAA
* *
27623434 TGAGTTGACTTGAGCTCGAA
1 TGAGCTGAATTGAGCTCGAA
27623454 TGAGCTG
1 TGAGCTG
27623461 GAAACGAGCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAA
Found at i:27626066 original size:20 final size:20
Alignment explanation
Indices: 27626043--27626089 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
27626033 GGGTTAAGAT
27626043 TGAGCTGACTTGAGCTCGAG
1 TGAGCTGACTTGAGCTCGAG
*
27626063 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGACTTGAGCTCGAG
27626083 TGAGCTG
1 TGAGCTG
27626090 GAAACGAGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.19, C:0.17, G:0.36, T:0.28
Consensus pattern (20 bp):
TGAGCTGACTTGAGCTCGAG
Found at i:27627814 original size:48 final size:48
Alignment explanation
Indices: 27627759--27627864 Score: 137
Period size: 48 Copynumber: 2.2 Consensus size: 48
27627749 TTGTCTTTTC
*
27627759 TTTCTTTTTCAATTT-TCTCT-TTTTCCTCACA-CTTTTGTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTT--TCACATCCTTT-TTCAATCTCAA
* *
27627807 TTTCTTTTTCGATTTCTTTCTCTTTTTCACATCCTTTTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
27627855 TTTCTTTTTC
1 TTTCTTTTTC
27627865 CATGACACTT
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.14, C:0.25, G:0.02, T:0.59
Consensus pattern (48 bp):
TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
Found at i:27630478 original size:20 final size:20
Alignment explanation
Indices: 27630455--27630501 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
27630445 GGGTTAAGAT
*
27630455 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
27630475 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
27630495 TGAGCTG
1 TGAGCTG
27630502 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:27632838 original size:16 final size:16
Alignment explanation
Indices: 27632815--27632851 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
27632805 ATTCGGAATT
27632815 AAAA-AAAAAGAAAAA
1 AAAAGAAAAAGAAAAA
27632830 AAAAGAAAAAGAAAAA
1 AAAAGAAAAAGAAAAA
27632846 AAAAGA
1 AAAAGA
27632852 GAAGTGATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.19
16 17 0.81
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAAGAAAAA
Found at i:27632851 original size:10 final size:10
Alignment explanation
Indices: 27632815--27632849 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
27632805 ATTCGGAATT
27632815 AAAAAAAAAG
1 AAAAAAAAAG
27632825 AAAAAAAAAG
1 AAAAAAAAAG
27632835 AAAAAGAAAA-
1 AAAAA-AAAAG
27632845 AAAAA
1 AAAAA
27632850 GAGAAGTGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 20 0.83
11 4 0.17
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:27633513 original size:15 final size:16
Alignment explanation
Indices: 27633488--27633519 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
27633478 CTCAACGGTT
27633488 CCAACGAAATCGAGAC
1 CCAACGAAATCGAGAC
27633504 CCAA-GAAATCGAGAC
1 CCAACGAAATCGAGAC
27633519 C
1 C
27633520 GTTCGGATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.44, C:0.31, G:0.19, T:0.06
Consensus pattern (16 bp):
CCAACGAAATCGAGAC
Found at i:27635928 original size:18 final size:18
Alignment explanation
Indices: 27635907--27635945 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
27635897 TTTCTTCAAC
*
27635907 TTCTATTTCAAATTTCTT
1 TTCTATTTCAAATTCCTT
* *
27635925 TTCTGTTTCACATTCCTT
1 TTCTATTTCAAATTCCTT
27635943 TTC
1 TTC
27635946 ACTCTCAATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.15, C:0.23, G:0.03, T:0.59
Consensus pattern (18 bp):
TTCTATTTCAAATTCCTT
Found at i:27639690 original size:12 final size:13
Alignment explanation
Indices: 27639668--27639715 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 13
27639658 TTGATCGAGA
27639668 AAAAGAAAAAGAG
1 AAAAGAAAAAGAG
27639681 AAAA-AAAAAGAGTG
1 AAAAGAAAAAGA--G
*
27639695 AAAAGAAAAGAAAG
1 AAAAGAAAA-AGAG
27639709 AAAAGAA
1 AAAAGAA
27639716 TGAGGAGAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
12 7 0.23
13 4 0.13
14 13 0.43
15 4 0.13
16 2 0.07
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (13 bp):
AAAAGAAAAAGAG
Found at i:27642350 original size:20 final size:20
Alignment explanation
Indices: 27642325--27642371 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
27642315 AGCTCGTTTC
27642325 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCGAGCTCAAGT
* *
27642345 CAGCTCATTCGAGCTCAATT
1 CAGCTCACTCGAGCTCAAGT
27642365 CAGCTCA
1 CAGCTCA
27642372 ATCTTAACCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.26, C:0.34, G:0.17, T:0.23
Consensus pattern (20 bp):
CAGCTCACTCGAGCTCAAGT
Found at i:27642369 original size:10 final size:10
Alignment explanation
Indices: 27642336--27642373 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
27642326 AGCTCACTCG
*
27642336 AGCTCAAGTC
1 AGCTCAATTC
27642346 AGCTC-ATTC
1 AGCTCAATTC
27642355 GAGCTCAATTC
1 -AGCTCAATTC
27642366 AGCTCAAT
1 AGCTCAAT
27642374 CTTAACCTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 3 0.12
10 18 0.72
11 4 0.16
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (10 bp):
AGCTCAATTC
Found at i:27644913 original size:12 final size:12
Alignment explanation
Indices: 27644896--27644920 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
27644886 AAGAGAGAGG
27644896 GTTTGAAAAAGA
1 GTTTGAAAAAGA
27644908 GTTTGAAAAAGA
1 GTTTGAAAAAGA
27644920 G
1 G
27644921 AAGAGTGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.28, T:0.24
Consensus pattern (12 bp):
GTTTGAAAAAGA
Found at i:27646460 original size:20 final size:20
Alignment explanation
Indices: 27646435--27646481 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
27646425 AGCTCGTTTC
27646435 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCGAGCTCAAGT
* *
27646455 CAGCTCATTCGAGCTCAATT
1 CAGCTCACTCGAGCTCAAGT
27646475 CAGCTCA
1 CAGCTCA
27646482 ATCTTAACCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.26, C:0.34, G:0.17, T:0.23
Consensus pattern (20 bp):
CAGCTCACTCGAGCTCAAGT
Found at i:27646479 original size:10 final size:10
Alignment explanation
Indices: 27646446--27646483 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
27646436 AGCTCACTCG
*
27646446 AGCTCAAGTC
1 AGCTCAATTC
27646456 AGCTC-ATTC
1 AGCTCAATTC
27646465 GAGCTCAATTC
1 -AGCTCAATTC
27646476 AGCTCAAT
1 AGCTCAAT
27646484 CTTAACCTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 3 0.12
10 18 0.72
11 4 0.16
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (10 bp):
AGCTCAATTC
Found at i:27653264 original size:15 final size:14
Alignment explanation
Indices: 27653244--27653296 Score: 97
Period size: 14 Copynumber: 3.7 Consensus size: 14
27653234 AACTAGCTTC
27653244 TTTTTTTTCACGAAA
1 TTTTTTTTCACG-AA
27653259 TTTTTTTTCACGAA
1 TTTTTTTTCACGAA
27653273 TTTTTTTTCACGAA
1 TTTTTTTTCACGAA
27653287 TTTTTTTTCA
1 TTTTTTTTCA
27653297 ACTTGATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
14 26 0.68
15 12 0.32
ACGTcount: A:0.21, C:0.13, G:0.06, T:0.60
Consensus pattern (14 bp):
TTTTTTTTCACGAA
Found at i:27653350 original size:12 final size:12
Alignment explanation
Indices: 27653333--27653389 Score: 98
Period size: 12 Copynumber: 4.8 Consensus size: 12
27653323 AATGGAAACC
27653333 AATTTTTTTTTG
1 AATTTTTTTTTG
27653345 AATTTTTTTTTG
1 AATTTTTTTTTG
27653357 AA-TTTTTTTTG
1 AATTTTTTTTTG
*
27653368 AATTTCTTTTTG
1 AATTTTTTTTTG
27653380 AATTTTTTTT
1 AATTTTTTTT
27653390 GAAGAAACTA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
11 11 0.26
12 31 0.74
ACGTcount: A:0.18, C:0.02, G:0.07, T:0.74
Consensus pattern (12 bp):
AATTTTTTTTTG
Found at i:27653352 original size:11 final size:11
Alignment explanation
Indices: 27653336--27653392 Score: 96
Period size: 11 Copynumber: 5.0 Consensus size: 11
27653326 GGAAACCAAT
27653336 TTTTTTTTGAA
1 TTTTTTTTGAA
27653347 TTTTTTTTTGAA
1 -TTTTTTTTGAA
27653359 TTTTTTTTGAA
1 TTTTTTTTGAA
27653370 TTTCTTTTTGAA
1 TTT-TTTTTGAA
27653382 TTTTTTTTGAA
1 TTTTTTTTGAA
27653393 GAAACTACTA
Statistics
Matches: 44, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
11 22 0.50
12 22 0.50
ACGTcount: A:0.18, C:0.02, G:0.09, T:0.72
Consensus pattern (11 bp):
TTTTTTTTGAA
Done.