Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_29
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 657899
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
File 1 of 3
Found at i:868 original size:22 final size:22
Alignment explanation
Indices: 840--961 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
830 TTCCACATCC
840 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
862 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
886 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
909 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
933 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
956 ATCACA
1 ATCACA
962 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:875 original size:47 final size:47
Alignment explanation
Indices: 812--1125 Score: 461
Period size: 47 Copynumber: 6.6 Consensus size: 47
802 CCCTTCGGGA
* * *
812 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
859 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
906 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
953 CTTATCACACATACACA-TGTTCACATTCATCATATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
1000 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
1047 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1094 CTTATCACATATATATACACTTTCACATTCAT
1 CTTATCAC--ATATATACACTTTCACATTCAT
1126 TCAAATATAC
Statistics
Matches: 246, Mismatches: 17, Indels: 6
0.91 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 222 0.90
48 1 0.00
49 22 0.09
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:6935 original size:51 final size:48
Alignment explanation
Indices: 6852--6960 Score: 155
Period size: 51 Copynumber: 2.2 Consensus size: 48
6842 CTGGAGGCCT
*
6852 AGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTCAATAAATTAGGGCAA
1 AGCC-CTTTTAATAACTGGGGCAAAGCCCTTTTCAATAAACTAGGGCAA
* *
6901 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCAT
1 AGCCCTTTT-AAT-AACTGGGGCA-AAGCCCTTTTCAATAAACTAGGGCAA
6952 AGCCCTTTT
1 AGCCCTTTT
6961 GCACTTCCTC
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
48 5 0.09
49 7 0.13
50 10 0.19
51 32 0.59
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCAAAGCCCTTTTCAATAAACTAGGGCAA
Found at i:6936 original size:26 final size:25
Alignment explanation
Indices: 6852--6960 Score: 159
Period size: 25 Copynumber: 4.4 Consensus size: 25
6842 CTGGAGGCCT
6852 AGCCTCTTTT-AAT-AACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCAA
* *
6876 AGCCCTTTTCAATAAATTAGGGCAA
1 AGCCCTTTTCAATAAACTGGGGCAA
6901 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCA-A
*
6927 AGCCCTTTTCAATAAACTGGGGCAT
1 AGCCCTTTTCAATAAACTGGGGCAA
6952 AGCCCTTTT
1 AGCCCTTTT
6961 GCACTTCCTC
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
23 5 0.06
24 7 0.09
25 40 0.52
26 25 0.32
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (25 bp):
AGCCCTTTTCAATAAACTGGGGCAA
Found at i:7039 original size:20 final size:20
Alignment explanation
Indices: 7010--7104 Score: 142
Period size: 20 Copynumber: 4.8 Consensus size: 20
7000 TTATGATTAC
*
7010 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
*
7030 ATCATATGCATATCATACAT
1 ATCATGTGCATATCATACAT
7050 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
7070 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
7090 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
7105 TCCCACGTAT
Statistics
Matches: 71, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
18 8 0.11
20 61 0.86
21 2 0.03
ACGTcount: A:0.36, C:0.19, G:0.08, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:7041 original size:11 final size:11
Alignment explanation
Indices: 7010--7087 Score: 78
Period size: 11 Copynumber: 7.6 Consensus size: 11
7000 TTATGATTAC
*
7010 ATCATGTGCAT
1 ATCATATGCAT
*
7021 TTCATA--CAT
1 ATCATATGCAT
7030 ATCATATGCAT
1 ATCATATGCAT
7041 ATCATA--CAT
1 ATCATATGCAT
*
7050 ATCATGTGCAT
1 ATCATATGCAT
7061 ATCATA--CAT
1 ATCATATGCAT
*
7070 ATCATGTGCAT
1 ATCATATGCAT
7081 ATCATAT
1 ATCATAT
7088 CAATCATGTA
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
9 24 0.44
11 30 0.56
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (11 bp):
ATCATATGCAT
Found at i:7102 original size:9 final size:10
Alignment explanation
Indices: 7027--7103 Score: 63
Period size: 9 Copynumber: 7.8 Consensus size: 10
7017 GCATTTCATA
*
7027 CATATCATAT
1 CATATCATGT
*
7037 GCATATCAT-A
1 -CATATCATGT
7047 CATATCATGT
1 CATATCATGT
*
7057 GCATATCAT-A
1 -CATATCATGT
7067 CATATCATGT
1 CATATCATGT
*
7077 GCATATCATAT
1 -CATATCATGT
7088 CA-ATCATGT
1 CATATCATGT
7097 -ATATCAT
1 CATATCAT
7104 ATCCCACGTA
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
8 1 0.02
9 27 0.49
10 2 0.04
11 25 0.45
ACGTcount: A:0.36, C:0.19, G:0.08, T:0.36
Consensus pattern (10 bp):
CATATCATGT
Found at i:9678 original size:27 final size:27
Alignment explanation
Indices: 9647--9823 Score: 203
Period size: 27 Copynumber: 6.5 Consensus size: 27
9637 TAAATTGTAC
9647 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
9674 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
9700 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
9728 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
9756 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
9783 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
9810 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
9824 AGACTCAATA
Statistics
Matches: 128, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:9761 original size:82 final size:81
Alignment explanation
Indices: 9648--9803 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
9638 AAATTGTACA
* *
9648 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
9712 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
9729 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
9794 TGCGAGTTGA
65 TGCGAATTGA
9804 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:9815 original size:82 final size:81
Alignment explanation
Indices: 9644--9823 Score: 227
Period size: 82 Copynumber: 2.2 Consensus size: 81
9634 GATTAAATTG
* *
9644 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
9709 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
9725 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
9789 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
9807 TATAGCACTGAGTGTGC
1 TACAGCACTAAGTGTGC
9824 AGACTCAATA
Statistics
Matches: 83, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:21041 original size:56 final size:56
Alignment explanation
Indices: 20955--21071 Score: 225
Period size: 56 Copynumber: 2.1 Consensus size: 56
20945 AGGGATGATA
20955 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATG
1 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATG
*
21011 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATG
1 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATG
21067 GGCAA
1 GGCAA
21072 TAAACTAATA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 60 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.22
Consensus pattern (56 bp):
GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATG
Found at i:22284 original size:40 final size:40
Alignment explanation
Indices: 22200--22424 Score: 239
Period size: 40 Copynumber: 5.7 Consensus size: 40
22190 TCGAATGATG
* * *
22200 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
22239 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
22280 TCCGGGCTAAG-CCCGAAGGCA-TTGATACGAGTTACTAAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACT-AAT
* *
22320 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
22359 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
22398 AACCGGGCTATGTCCCAAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
22425 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 16, Indels: 20
0.82 0.08 0.10
Matches are distributed among these distances:
38 3 0.02
39 30 0.19
40 113 0.71
41 13 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:22339 original size:79 final size:80
Alignment explanation
Indices: 22200--22424 Score: 253
Period size: 79 Copynumber: 2.8 Consensus size: 80
22190 TCGAATGATG
* * * * * *
22200 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
22263 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
* *
22280 TCCGGGCTAAG-CCCGAAGGCA-TTGATACGAGTTACTA-AATTCGGGTTAAGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTG-TACGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCAT
*
22342 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
* * * *
22359 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCAAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
22424 G
66 G
22425 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
78 2 0.02
79 60 0.49
80 55 0.45
81 5 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:22446 original size:119 final size:119
Alignment explanation
Indices: 22207--22447 Score: 278
Period size: 119 Copynumber: 2.0 Consensus size: 119
22197 ATGTCCGGGC
*
22207 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
* * *
22272 ATACTAATTCCGGGCTAAGCCCGAAGGCATTGATACGAGTTACTAAATTCGGGT
66 ATACTAATACCGGGCTAAGCCCAAAGGCATTGATACGAGTTACTAAATTCCGGT
* * * **
22326 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
* * *
22389 AGTTACT-ATAACCGGGCTATGTCCCAAAGGCATTTGA-ACGAG-TAGCTATA-TCCGGT
64 AGATACTAAT-ACCGGGCTAAG-CCCAAAGGCA-TTGATACGAGTTA-CTAAATTCCGGT
22445 TAA
1 TAA
22448 ATTCTGAAGG
Statistics
Matches: 104, Mismatches: 12, Indels: 12
0.81 0.09 0.09
Matches are distributed among these distances:
118 3 0.03
119 72 0.69
120 25 0.24
121 4 0.04
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (119 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
ATACTAATACCGGGCTAAGCCCAAAGGCATTGATACGAGTTACTAAATTCCGGT
Found at i:28194 original size:25 final size:25
Alignment explanation
Indices: 28136--28201 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 25
28126 CAGCTCACAT
* * *
28136 GAGCTTACCGTTATTCAGCTTGGAG
1 GAGCTTACTGTTATCCAACTTGGAG
28161 GAGCTTACTGTTATCCAACTTGGAG
1 GAGCTTACTGTTATCCAACTTGGAG
28186 GAGCTTACTGATTATC
1 GAGCTTACTG-TTATC
28202 GCTAATATGA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
25 32 0.86
26 5 0.14
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (25 bp):
GAGCTTACTGTTATCCAACTTGGAG
Found at i:28658 original size:17 final size:17
Alignment explanation
Indices: 28636--28677 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
28626 TACAAGTCAG
* *
28636 ATATAATATACTTTTAA
1 ATATAATACACATTTAA
28653 ATATAA-ACACATTTAA
1 ATATAATACACATTTAA
28669 ATA-AATACA
1 ATATAATACA
28678 TATAATAAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 2 0.09
16 14 0.64
17 6 0.27
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.36
Consensus pattern (17 bp):
ATATAATACACATTTAA
Found at i:34981 original size:27 final size:26
Alignment explanation
Indices: 34942--35053 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
34932 AGCATGGCTG
* * *
34942 CCAGAACTGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
34968 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
34996 CCAGAACAGTTATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
35023 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
35050 CCAG
1 CCAG
35054 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 6 0.08
27 51 0.70
28 16 0.22
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:39669 original size:39 final size:40
Alignment explanation
Indices: 39624--39795 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
39614 GCTCCTCGTT
* * *
39624 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* *
39664 C-AATGCCTTCGGGACATAACCCGAATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
39703 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
39743 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
39783 CAAATGCCTTCGG
1 CAAATGCCTTCGG
39796 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.29
40 79 0.68
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:39808 original size:80 final size:79
Alignment explanation
Indices: 39624--39848 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
39614 GCTCCTCGTT
* * * * *
39624 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCC-GA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
39688 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
39703 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
39768 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
39783 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
39847 GA
63 GA
39849 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 67 0.55
81 15 0.12
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:39857 original size:41 final size:41
Alignment explanation
Indices: 39780--39857 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
39770 TTTGTATCTC
* * *
39780 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
39821 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
39858 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:50738 original size:40 final size:39
Alignment explanation
Indices: 50701--50878 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 39
50691 ATATCCGGAC
50701 TAAGATCCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGT
* *
50741 TAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * *
50781 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * * * *
50821 TATGTCCCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGC
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
50860 TAAGTCCCGAAGGCATTTG
1 TAAGT-CCGAAGGCATTTG
50879 AACGAGGAGC
Statistics
Matches: 120, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 33 0.28
40 84 0.70
41 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
Found at i:50791 original size:80 final size:79
Alignment explanation
Indices: 50707--50878 Score: 229
Period size: 79 Copynumber: 2.2 Consensus size: 79
50697 GGACTAAGAT
*
50707 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
50771 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
50787 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
50852 AACCGGGCTAAGTC
66 AACCGGGCTAAGTC
50866 CCGAAGGCATTTG
1 CCGAAGGCATTTG
50879 AACGAGGAGC
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
79 39 0.49
80 38 0.47
81 3 0.04
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:50896 original size:79 final size:80
Alignment explanation
Indices: 50734--50911 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
50724 AGATACAAAT
* * * *
50734 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
50799 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
50814 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
50878 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
50893 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
50912 TACGTGATTT
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
78 15 0.18
79 49 0.60
80 18 0.22
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:56495 original size:27 final size:26
Alignment explanation
Indices: 56455--56567 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
56445 CAGCATGACT
*
56455 ACCAGAACAGATAATGTGACAGAGTC
1 ACCAGAACAGATAATGTGACAGAGCC
* *
56481 ACCAGATAAAGATAATCGTGACAGAACC
1 ACCAGA-ACAGATAAT-GTGACAGAGCC
*
56509 ACCAGAACAGATATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGACAGAGCC
* * *
56536 ACCAGATCAGATAATTGTGGCATAGCC
1 ACCAGAACAGATAA-TGTGACAGAGCC
56563 ACCAG
1 ACCAG
56568 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 7 0.09
27 51 0.68
28 17 0.23
ACGTcount: A:0.40, C:0.22, G:0.22, T:0.16
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGACAGAGCC
Found at i:58029 original size:24 final size:24
Alignment explanation
Indices: 57997--58045 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
57987 ACACAGTTCA
57997 CCCTAATCAGCTCCTAAATCCTCT
1 CCCTAATCAGCTCCTAAATCCTCT
* *
58021 CCCTTATCAGCTCCTAAATCTTCT
1 CCCTAATCAGCTCCTAAATCCTCT
58045 C
1 C
58046 TAGACAGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.22, C:0.41, G:0.04, T:0.33
Consensus pattern (24 bp):
CCCTAATCAGCTCCTAAATCCTCT
Found at i:60778 original size:50 final size:50
Alignment explanation
Indices: 60655--61245 Score: 471
Period size: 50 Copynumber: 11.8 Consensus size: 50
60645 TGAGAACACA
* * * *** *
60655 TGTGTAGTACTATGTACAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG--TTAGGTCACG
** * * *
60707 TGTGTAGTACTAAGTTTAGGCTACTACATGTACCAGATAGTTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACG
* * * ** * * * *
60757 TGTCTAGTACGAAGTGCAGGCTACTATGCATACCCGACAACTTCA-ATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTT-AGGTCACG
* * *
60808 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACG
* * * *
60858 TGTGTAG---TAAGTGTAGGCTACTACATGTACCAGATAGTTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACG
* * * * * * *
60905 TGTCTAGTACGAAGTGCAGGCTACTATGCGTACCCGATAACTTCA-ATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTT-AGGTCACG
* * * *
60956 TGTGTAGTGCTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACG
* * *
61006 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAAATAGTTAGGTCGA-A
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTC-ACG
* * * * * * *
61056 TGTGTAGTACTAAATGCAAGCTATTACGCGTACCCA-ACAACTTCA-ATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGA-TAGTT-AGGTCACG
* ** *
61107 TGTGTAGTAGTAAGTGCAGGCTACTACGTGTATTAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACG
* * * * *
61157 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTT-GGCCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACG
* * * *
61206 TGTGTAGCACTAAGTGAAGGCTACTATGCGTACCAGATAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
61246 CTTCGGTTAC
Statistics
Matches: 422, Mismatches: 101, Indels: 35
0.76 0.18 0.06
Matches are distributed among these distances:
47 41 0.10
49 41 0.10
50 197 0.47
51 109 0.26
52 34 0.08
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACG
Found at i:60829 original size:101 final size:100
Alignment explanation
Indices: 60697--61184 Score: 416
Period size: 101 Copynumber: 4.9 Consensus size: 100
60687 TAAGATGGTT
* ** * * *
60697 TTAGGTCACGTGTGTAGTACTAAGTTTAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTCT
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGT
* * *
60762 AGTACGAAGTGCAGGCTACTATGCATACCCGACAAC
66 AGTACTAAGTGCAGGCTACTACGCATACCAGA-AAC
* *
60798 TTCA-ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTG
1 TT-AGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTG
* *** * *
60862 TAG---TAAGTGTAGGCTACTACATGTACCAGATAG
65 TAGTACTAAGTGCAGGCTACTACGCATACCAGAAAC
* * * * * * * * * * *
60895 TTAGGTCGCATGTCTAGTACGAAGTGCAGGCTACTATGCGTACCCGATAACTTCA-ATCACGTGT
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTT-AGGTCACATGT
* * ** * ***
60959 GTAGTGCTAAGTGTAGGCTACTACGTGTATCAGATGG
64 GTAGTACTAAGTGCAGGCTACTACGCATACCAGAAAC
* * *
60996 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAAATAGTTAGGTCGA-ATGTG
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTC-ACATGTG
* * * *
61060 TAGTACTAAATGCAAGCTATTACGCGTACCCA-ACAAC
65 TAGTACTAAGTGCAGGCTACTACGCATA-CCAGA-AAC
* ** * *
61097 TTCA-ATCACGTGTGTAGTAGTAAGTGCAGGCTACTACGTGTATTAGATGGTTAGGTCACGTGTG
1 TT-AGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTG
61161 TAGTACTAAGTGCAGGCTACTACG
65 TAGTACTAAGTGCAGGCTACTACG
61185 TGTATCAGAT
Statistics
Matches: 308, Mismatches: 66, Indels: 26
0.77 0.17 0.06
Matches are distributed among these distances:
96 1 0.00
97 38 0.12
98 33 0.11
99 2 0.01
100 33 0.11
101 199 0.65
102 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (100 bp):
TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGT
AGTACTAAGTGCAGGCTACTACGCATACCAGAAAC
Found at i:61111 original size:151 final size:151
Alignment explanation
Indices: 60655--61239 Score: 820
Period size: 151 Copynumber: 3.9 Consensus size: 151
60645 TGAGAACACA
* * * * * *
60655 TGTGTAGTACTATGTACAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACGTGTGTAGTACTAA
1 TGTGTAGTGCTAAGTGCAGGCTACTACGTGTATCAGATGG--TTAGGTCACGTGTGTAGTACTAA
*
60720 GTTTAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTCTAGTACGAAGTGCAGGCTACTATG
64 GTGTAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTCTAGTACGAAGTGCAGGCTACTATG
*
60785 CATACCCGACAACTTCAATCACG
129 CGTACCCGACAACTTCAATCACG
* *
60808 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAG---TAAGT
1 TGTGTAGTGCTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
60870 GTAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTCTAGTACGAAGTGCAGGCTACTATGCG
66 GTAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTCTAGTACGAAGTGCAGGCTACTATGCG
*
60935 TACCCGATAACTTCAATCACG
131 TACCCGACAACTTCAATCACG
*
60956 TGTGTAGTGCTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTGCTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
* * * * * * * * *
61021 GTAGGCTACTACGTGTACCAAATAGTTAGGTCGAATGTGTAGTACTAAATGCAAGCTATTACGCG
66 GTAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTCTAGTACGAAGTGCAGGCTACTATGCG
*
61086 TACCCAACAACTTCAATCACG
131 TACCCGACAACTTCAATCACG
*
61107 TGTGTAGTAG-TAAGTGCAGGCTACTACGTGTATTAGATGGTTAGGTCACGTGTGTAGTACTAAG
1 TGTGTAGT-GCTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
* * * * * * * * *
61171 TGCAGGCTACTACGTGTATCAGATTGTT-GGCCGCATGTGTAGCACTAAGTGAAGGCTACTATGC
65 TGTAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTCTAGTACGAAGTGCAGGCTACTATGC
61235 GTACC
130 GTACC
61240 AGATAGCTTC
Statistics
Matches: 391, Mismatches: 37, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
148 142 0.36
150 33 0.08
151 180 0.46
152 1 0.00
153 35 0.09
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (151 bp):
TGTGTAGTGCTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
GTAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTCTAGTACGAAGTGCAGGCTACTATGCG
TACCCGACAACTTCAATCACG
Found at i:61464 original size:16 final size:15
Alignment explanation
Indices: 61443--61472 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
61433 GAATGGAGTA
61443 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
61459 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
61473 TAAAATAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:64990 original size:42 final size:41
Alignment explanation
Indices: 64920--65039 Score: 102
Period size: 43 Copynumber: 2.8 Consensus size: 41
64910 GTAACTCAAT
* * *
64920 ATCGATGCCTCTGTCCCAGATAGAGTCTTACACGAAAT-T-A
1 ATCGAGGCCTGTGTCCCAGACAG-GTCTTACACGAAATCTCA
* * *
64960 GATACGATGTC-GATGTCCCAGACATGGTCTTATACGTAAATCTCA
1 -AT-CGAGGCCTG-TGTCCCAGACA-GGTCTTACACG-AAATCTCA
65005 ATCGAGGCCTGTGTCCCAGACACGGTCTTACACGA
1 ATCGAGGCCTGTGTCCCAGACA-GGTCTTACACGA
65040 TGTCTCAGAC
Statistics
Matches: 64, Mismatches: 8, Indels: 13
0.75 0.09 0.15
Matches are distributed among these distances:
41 2 0.03
42 26 0.41
43 31 0.48
44 4 0.06
45 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (41 bp):
ATCGAGGCCTGTGTCCCAGACAGGTCTTACACGAAATCTCA
Found at i:72359 original size:42 final size:43
Alignment explanation
Indices: 72269--72361 Score: 100
Period size: 42 Copynumber: 2.2 Consensus size: 43
72259 ATCCCGGATG
* *** *
72269 TGGTCTTACATGTAACTCAATATCGATGCCTCTGTCCCAGATA
1 TGGTCTTACATGTAAATCAATATCGATGCAGATGTCCCAGACA
* *
72312 GGGTCTTACATG-AAATCAGATAT-GATGCAGATGTTCCAGACA
1 TGGTCTTACATGTAAATCA-ATATCGATGCAGATGTCCCAGACA
72354 TGGTCTTA
1 TGGTCTTA
72362 TACATAAATC
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
42 26 0.63
43 15 0.37
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (43 bp):
TGGTCTTACATGTAAATCAATATCGATGCAGATGTCCCAGACA
Found at i:75930 original size:29 final size:29
Alignment explanation
Indices: 75846--75935 Score: 121
Period size: 29 Copynumber: 3.2 Consensus size: 29
75836 TACATACATG
*
75846 CATATGGCCCACT-GGCCC-AATCTCATT
1 CATATGGCCCATTAGGCCCAAATCTCATT
* * *
75873 TATATGGCCCATTAGGCCCAAAACACATT
1 CATATGGCCCATTAGGCCCAAATCTCATT
*
75902 CGTATGGCCCATTAGGCCCAAATCTCATT
1 CATATGGCCCATTAGGCCCAAATCTCATT
75931 CATAT
1 CATAT
75936 TCATGATTTC
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
27 11 0.21
28 5 0.10
29 36 0.69
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.27
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATCTCATT
Found at i:80770 original size:50 final size:50
Alignment explanation
Indices: 80654--80898 Score: 303
Period size: 50 Copynumber: 4.9 Consensus size: 50
80644 ATTGTGAGAA
* * * * *
80654 CACATGTGCAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATAG--TTAGGT
* *
80706 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATAGTTAGGT
* * * *
80756 CGCATGTGTAGTACTAAGTGCAGGCTACTACGTGCATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATAGTTAGGT
** * *
80806 CATGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATAGTTAGGT
* * *
80855 CACATGTGTAGCACTAAGTGAAGGCTACTATGCGTATCAGATAG
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATAG
80899 CTTCGGTTAC
Statistics
Matches: 168, Mismatches: 25, Indels: 3
0.86 0.13 0.02
Matches are distributed among these distances:
49 40 0.24
50 91 0.54
52 37 0.22
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATAGTTAGGT
Found at i:81117 original size:16 final size:15
Alignment explanation
Indices: 81096--81125 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
81086 GAATGAAGTA
81096 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
81112 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
81126 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:82827 original size:25 final size:25
Alignment explanation
Indices: 82767--82828 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
82757 CTCACATGAG
* *
82767 CTTACCGTTATTCAGCTCGAAAGAT
1 CTTACCGTTATCCAGCTCGAAAGAA
* *
82792 CTTATCGTTATCCAGCTCG-GAGAA
1 CTTACCGTTATCCAGCTCGAAAGAA
82816 CTTACCGATTATC
1 CTTACCG-TTATC
82829 ACTCGTATGA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 9 0.29
25 22 0.71
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (25 bp):
CTTACCGTTATCCAGCTCGAAAGAA
Found at i:85362 original size:9 final size:10
Alignment explanation
Indices: 85317--85371 Score: 53
Period size: 10 Copynumber: 5.7 Consensus size: 10
85307 TCTCATGGGC
*
85317 ATGGGCCGTT
1 ATGGGCCGTG
*
85327 ATGGGCC-TC
1 ATGGGCCGTG
*
85336 ATTGGGCCGAG
1 A-TGGGCCGTG
85347 ATGGGCCGTG
1 ATGGGCCGTG
85357 -TGGGCC-TG
1 ATGGGCCGTG
85365 ATGGGCC
1 ATGGGCC
85372 CAATGGGCTC
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
8 2 0.05
9 14 0.37
10 21 0.55
11 1 0.03
ACGTcount: A:0.11, C:0.24, G:0.44, T:0.22
Consensus pattern (10 bp):
ATGGGCCGTG
Found at i:85830 original size:28 final size:27
Alignment explanation
Indices: 85798--85863 Score: 64
Period size: 28 Copynumber: 2.4 Consensus size: 27
85788 TTGGAGGAAG
*
85798 TACTG-TATTAGTGGTTTTGCCACGTAAT
1 TACTGCTATTAGTGGCTTTGCCACGT--T
* *
85826 TACTGCT-CTGGTGGCTTTGCCACGTT
1 TACTGCTATTAGTGGCTTTGCCACGTT
*
85852 TACTGTTATTAG
1 TACTGCTATTAG
85864 CAGCTTTGTT
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
26 7 0.23
27 2 0.07
28 20 0.67
29 1 0.03
ACGTcount: A:0.17, C:0.18, G:0.23, T:0.42
Consensus pattern (27 bp):
TACTGCTATTAGTGGCTTTGCCACGTT
Found at i:87970 original size:55 final size:55
Alignment explanation
Indices: 87902--88036 Score: 204
Period size: 55 Copynumber: 2.5 Consensus size: 55
87892 TGAGCCCTTA
*
87902 GCCCGTGTG-CAACACTGACTTTA-AAGCACGGCCATGACACATGCCCGTGTGGCCT
1 GCCCGTG-GACAACACTGACTTTAGAA-CACGGCCATGACACACGCCCGTGTGGCCT
87957 GCCCGTGGACAACACTGACTTTAGAACACGGCCATGACACACGCCCGTGTGGCCT
1 GCCCGTGGACAACACTGACTTTAGAACACGGCCATGACACACGCCCGTGTGGCCT
*
88012 GCCTGTGGACAACACTTG-CTTTAGA
1 GCCCGTGGACAACAC-TGACTTTAGA
88037 TTTTAAGTGC
Statistics
Matches: 75, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
54 1 0.01
55 70 0.93
56 4 0.05
ACGTcount: A:0.23, C:0.32, G:0.25, T:0.20
Consensus pattern (55 bp):
GCCCGTGGACAACACTGACTTTAGAACACGGCCATGACACACGCCCGTGTGGCCT
Found at i:88985 original size:46 final size:46
Alignment explanation
Indices: 88930--89096 Score: 167
Period size: 46 Copynumber: 3.6 Consensus size: 46
88920 TTTGTAGCCA
* *
88930 ATGCATGTCCCAAACATGTCTTACACTGGCT-TACATCTCAAGGTCG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTA-ATCTCAAGGCCG
* * *
88976 ATGCATGTCCCAGACATGTCTTACACTAGCTCTAGTCTCAATGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTAATCTCAAGGCCG
* * * ** *
89022 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCA
1 ATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTAAT-CTCAAGGCCG
* *
89070 ATGCATGTCCTAAACATGTCTTACACT
1 ATGCATGTCCCAGACATGTCTTACACT
89097 AGCACACAAA
Statistics
Matches: 102, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
46 51 0.50
47 28 0.27
48 22 0.22
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.29
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTCTAATCTCAAGGCCG
Found at i:89074 original size:94 final size:90
Alignment explanation
Indices: 88832--89102 Score: 246
Period size: 94 Copynumber: 2.9 Consensus size: 90
88822 GAGTATAATA
* *
88832 CCGATGACATGTCCTAGACATGGTCTTACACTGACTCTCACATATTCGTGCCGATGCCATGTCCC
1 CCGATG-CATGTCCTAGACATGGTCTTACACTGGCTCTCATA-ATT-G-GCCGATG-CATGTCCC
* * * **
88897 AGACACGGTCTTACACTA-CACATTTTGTAG
61 AGACA-TGTCTTACACTAGCACAGTCTCAAG
* * * *
88927 CCAATGCATGTCCCAAACAT-GTCTTACACTGGCT-TACATCTCAA--GGTCGATGCATGTCCCA
1 CCGATGCATGTCCTAGACATGGTCTTACACTGGCTCT-CA--T-AATTGGCCGATGCATGTCCCA
*
88988 GACATGTCTTACACTAGCTCTAGTCTCAATG
62 GACATGTCTTACACTAGCAC-AGTCTCAA-G
* * *
89019 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCCAATGCATGTCCTAAA
1 CCGATG-CATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-TGGCCGATGCATGTCCCAGA
89084 CATGTCTTACACTAGCACA
64 CATGTCTTACACTAGCACA
89103 CAAATGACCC
Statistics
Matches: 143, Mismatches: 20, Indels: 28
0.75 0.10 0.15
Matches are distributed among these distances:
89 11 0.08
90 15 0.10
91 12 0.08
92 9 0.06
93 28 0.20
94 60 0.42
95 7 0.05
96 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.28
Consensus pattern (90 bp):
CCGATGCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATTGGCCGATGCATGTCCCAGACA
TGTCTTACACTAGCACAGTCTCAAG
Found at i:89461 original size:29 final size:30
Alignment explanation
Indices: 89428--89484 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
89418 AATTTCACAT
* *
89428 CTTTGGTAAAATGATCA-TTTGCCCCTAAA
1 CTTTGGCAAAATGACCATTTTGCCCCTAAA
89457 CTTTGGCAAAATGACCATTTTGCCCCTA
1 CTTTGGCAAAATGACCATTTTGCCCCTA
89485 TACTCGAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 15 0.60
30 10 0.40
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTGCCCCTAAA
Found at i:90930 original size:30 final size:30
Alignment explanation
Indices: 90894--90969 Score: 107
Period size: 30 Copynumber: 2.5 Consensus size: 30
90884 TGGTTCTCAC
* *
90894 ATCCCTTTTCGTAATTCGATAACCAAAGTT
1 ATCCCTTTTCATAATTCGATAACCAAAGCT
* * *
90924 ATCCCTTTTCATAGTTCGATAGCCGAAGCT
1 ATCCCTTTTCATAATTCGATAACCAAAGCT
90954 ATCCCTTTTCATAATT
1 ATCCCTTTTCATAATT
90970 TGATTGTCAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.26, C:0.25, G:0.11, T:0.38
Consensus pattern (30 bp):
ATCCCTTTTCATAATTCGATAACCAAAGCT
Found at i:90988 original size:30 final size:30
Alignment explanation
Indices: 90924--91128 Score: 143
Period size: 30 Copynumber: 6.8 Consensus size: 30
90914 AACCAAAGTT
* * *
90924 ATCCCTTTTCATAGTTCGATAGCCGA--AGCT
1 ATCCCTTTTCATAATTTGATAGCC-ATCA-CC
* *
90954 ATCCCTTTTCATAATTTGATTGTCATCACC
1 ATCCCTTTTCATAATTTGATAGCCATCACC
** ****
90984 ATCCCTTTTCATTGTTTGATAGTTGCCACC
1 ATCCCTTTTCATAATTTGATAGCCATCACC
* **
91014 ATCCCTTTTTCATGATTTGATAG-CAGAAGCC
1 ATCCC-TTTTCATAATTTGATAGCCATCA-CC
*
91045 ATCCCTTTTCATTAGA-TCGATAGCCA-CAGCC
1 ATCCCTTTTCA-TA-ATTTGATAGCCATCA-CC
* * *
91076 ATCCCTTTTCATAATTTGATGGCCGTCACT
1 ATCCCTTTTCATAATTTGATAGCCATCACC
91106 ATCCCTTTTCATAA-TTGATAGCC
1 ATCCCTTTTCATAATTTGATAGCC
91129 GAAGTTATCC
Statistics
Matches: 141, Mismatches: 25, Indels: 19
0.76 0.14 0.10
Matches are distributed among these distances:
29 10 0.07
30 81 0.57
31 47 0.33
32 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.13, T:0.38
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATAGCCATCACC
Found at i:91110 original size:61 final size:60
Alignment explanation
Indices: 90924--91146 Score: 202
Period size: 61 Copynumber: 3.7 Consensus size: 60
90914 AACCAAAGTT
* * * * *
90924 ATCCCTTTTCATAGTTCGATAGCCGAAGCTATCCCTTTTCATAATTTGATTGTCATCACC
1 ATCCCTTTTCATAGATCGATAGCCGAAGCCATCCCTTTTCATAATTTGATAGCCGTCACC
* * * ** * * * *
90984 ATCCCTTTTCATTGTTTGATAGTTGCCA-CCATCCCTTTTTCATGATTTGATAGCAG-AAGCC
1 ATCCCTTTTCATAGATCGATAGCCG-AAGCCATCCC-TTTTCATAATTTGATAGCCGTCA-CC
* *
91045 ATCCCTTTTCATTAGATCGATAGCC-ACAGCCATCCCTTTTCATAATTTGATGGCCGTCACT
1 ATCCCTTTTCA-TAGATCGATAGCCGA-AGCCATCCCTTTTCATAATTTGATAGCCGTCACC
* **
91106 ATCCCTTTTCATA-ATTGATAGCCGAAGTTATCCCTTTTCAT
1 ATCCCTTTTCATAGATCGATAGCCGAAGCCATCCCTTTTCAT
91147 TCGTCAATGA
Statistics
Matches: 129, Mismatches: 26, Indels: 17
0.75 0.15 0.10
Matches are distributed among these distances:
59 23 0.18
60 31 0.24
61 59 0.46
62 16 0.12
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.38
Consensus pattern (60 bp):
ATCCCTTTTCATAGATCGATAGCCGAAGCCATCCCTTTTCATAATTTGATAGCCGTCACC
Found at i:94162 original size:35 final size:33
Alignment explanation
Indices: 94123--94188 Score: 78
Period size: 35 Copynumber: 1.9 Consensus size: 33
94113 TCTCATCTCG
*
94123 AAGGACCTATAAACTATTTACACGGTGTCACCTTA
1 AAGGACCTATAAACCATTTACA--GTGTCACCTTA
* * *
94158 AAGGACTTGTAAACCATTTTCAGTGTCACCT
1 AAGGACCTATAAACCATTTACAGTGTCACCT
94189 ATTAGAGTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 9 0.33
35 18 0.67
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (33 bp):
AAGGACCTATAAACCATTTACAGTGTCACCTTA
Found at i:96516 original size:26 final size:26
Alignment explanation
Indices: 96487--96538 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
96477 CCTCCAAACT
*
96487 TAATTTATTGCTTGTCCTAGTAATGC
1 TAATTTATTGCTCGTCCTAGTAATGC
96513 TAATTTATTGCTCGTCCTAGTAATGC
1 TAATTTATTGCTCGTCCTAGTAATGC
96539 ATTGCTCGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.17, G:0.15, T:0.44
Consensus pattern (26 bp):
TAATTTATTGCTCGTCCTAGTAATGC
Found at i:96542 original size:20 final size:20
Alignment explanation
Indices: 96519--96559 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
96509 ATGCTAATTT
96519 ATTGCTCGTCCTAGTAATGC
1 ATTGCTCGTCCTAGTAATGC
96539 ATTGCTCGTCCTAGTAATGC
1 ATTGCTCGTCCTAGTAATGC
96559 A
1 A
96560 CAAATTGCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (20 bp):
ATTGCTCGTCCTAGTAATGC
Found at i:104078 original size:13 final size:13
Alignment explanation
Indices: 104060--104084 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
104050 CCGAAACTAG
104060 AAAGAAAAAAAAC
1 AAAGAAAAAAAAC
104073 AAAGAAAAAAAA
1 AAAGAAAAAAAA
104085 TGCTCATCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.04, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAAAAC
Found at i:105297 original size:79 final size:80
Alignment explanation
Indices: 105162--105385 Score: 289
Period size: 79 Copynumber: 2.8 Consensus size: 80
105152 TTGAATGCTG
* * *
105162 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGCTAAG-TCCCGAAGGCA
*
105223 TTTGTGCGAGATACTAAT
63 TTTGTGCGAGATACTAAA
*
105241 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
*
105305 GTGCGAGTTACTAAA
66 GTGCGAGATACTAAA
* * *
105320 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAAT-CGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
105384 TG
65 TG
105386 AACGAGGAGC
Statistics
Matches: 129, Mismatches: 10, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
78 10 0.08
79 61 0.47
80 55 0.43
81 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:105399 original size:40 final size:40
Alignment explanation
Indices: 105162--105385 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
105152 TTGAATGCTG
* *
105162 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
105201 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
105241 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
105280 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
105320 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
105361 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
105386 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 12, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
39 53 0.32
40 102 0.61
41 11 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:112069 original size:13 final size:13
Alignment explanation
Indices: 112051--112075 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
112041 CCGAAACTAG
112051 AAAGAAAAAAAAC
1 AAAGAAAAAAAAC
112064 AAAGAAAAAAAA
1 AAAGAAAAAAAA
112076 TGCTCATCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.04, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAAAAC
Found at i:113298 original size:40 final size:40
Alignment explanation
Indices: 113153--113376 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
113143 TTGAATGCTG
* *
113153 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
113192 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
113232 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
113271 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
113311 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
113352 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
113377 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 14, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
39 52 0.32
40 102 0.62
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:113356 original size:80 final size:80
Alignment explanation
Indices: 113153--113376 Score: 278
Period size: 79 Copynumber: 2.8 Consensus size: 80
113143 TTGAATGCTG
* * * * *
113153 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
113215 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
* * *
113232 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
113295 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* *
113311 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
113376 G
66 G
113377 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
78 11 0.09
79 56 0.45
80 55 0.44
81 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:113394 original size:80 final size:79
Alignment explanation
Indices: 113160--113409 Score: 219
Period size: 80 Copynumber: 3.2 Consensus size: 79
113150 CTGTCCGGGC
* * * **
113160 TAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCATTTGTGC
1 TAAGTCCCGAAGGCATTTGTGCGAA-TTACTAA-ATCCGGGCTAAG-TCCCGAAGGCATTTGAAC
* * *
113221 GAGAT-ACTAATTCTGGGC
63 GAG-TGACTAAATC-CGGT
* * **
113239 TAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG
*
113303 TTACTAAATCCGGGT
66 TGACTAAATCC-GGT
*
113318 TAAGTCCCGAAGGCATTTGTGCGAATTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGA
1 TAAGTCCCGAAGGCATTTGTGCGAATTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGA
*
113382 G-GAGCTATATCCGGT
65 GTGA-CTAAATCCGGT
* *
113397 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
113410 TACGTGATTT
Statistics
Matches: 145, Mismatches: 17, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
78 11 0.08
79 64 0.44
80 68 0.47
81 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG
TGACTAAATCCGGT
Found at i:116608 original size:40 final size:39
Alignment explanation
Indices: 116547--116624 Score: 97
Period size: 40 Copynumber: 2.0 Consensus size: 39
116537 TTAGACAAAC
*
116547 ATTAATGATGTCAAAGTTAAGACACATAATTAAA-ACACAT
1 ATTAATGATGTCAAAGCTAAG--ACATAATTAAAGACACAT
*
116587 ATTAATTATGTTCAAA-CTAAGACATAATTAAAGACACA
1 ATTAATGATG-TCAAAGCTAAGACATAATTAAAGACACA
116625 AACTAAAGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
38 11 0.32
39 5 0.15
40 13 0.38
41 5 0.15
ACGTcount: A:0.50, C:0.13, G:0.09, T:0.28
Consensus pattern (39 bp):
ATTAATGATGTCAAAGCTAAGACATAATTAAAGACACAT
Found at i:120028 original size:43 final size:43
Alignment explanation
Indices: 119904--120060 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 43
119894 TGTGTTTTTG
* * *
119904 TGTAAGACCATGTCTGGGATATTGGCATCAACT-TATGATTTACA
1 TGTAAGACCATGTCTGGGACAGTGGCATCAA-TATTTGATTT-CA
* * * *
119948 TGTAAGACCATGTCTTGGATA-TCGGCATC-ATAATTGATTTCG
1 TGTAAGACCATGTCTGGGACAGT-GGCATCAATATTTGATTTCA
* *
119990 TGTAAGACCCTGTCTGGGACAGTGGCATCAATATTTGATTACA
1 TGTAAGACCATGTCTGGGACAGTGGCATCAATATTTGATTTCA
*
120033 TGTAAGACCACGTCTGGGAC-GTTGGCAT
1 TGTAAGACCATGTCTGGGACAG-TGGCAT
120061 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
42 27 0.28
43 43 0.45
44 26 0.27
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGTGGCATCAATATTTGATTTCA
Found at i:122872 original size:27 final size:27
Alignment explanation
Indices: 122835--122975 Score: 185
Period size: 27 Copynumber: 5.2 Consensus size: 27
122825 CAATTTGATG
* *
122835 AAATGACTGTTTTGCCCTTATGAGGTG
1 AAATGATTGTTTTGCCCTTATGAGGTA
** *
122862 AAACAATTGTTTTGCCCTTATGTGGTA
1 AAATGATTGTTTTGCCCTTATGAGGTA
* * *
122889 AAATGACTGTTCTGCCCTTATGTGGTA
1 AAATGATTGTTTTGCCCTTATGAGGTA
*
122916 AAATGATTGTTTTGCCCTTCTGAGGTA
1 AAATGATTGTTTTGCCCTTATGAGGTA
122943 AAATGATTGTTTTGCCCTTAT-ATGGTA
1 AAATGATTGTTTTGCCCTTATGA-GGTA
122970 AAATGA
1 AAATGA
122976 CTGAAATGCC
Statistics
Matches: 99, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 98 0.99
ACGTcount: A:0.26, C:0.14, G:0.21, T:0.39
Consensus pattern (27 bp):
AAATGATTGTTTTGCCCTTATGAGGTA
Found at i:122985 original size:27 final size:27
Alignment explanation
Indices: 122835--123013 Score: 173
Period size: 27 Copynumber: 6.6 Consensus size: 27
122825 CAATTTGATG
*
122835 AAATGACTGTTTTGCCCTTATGA-GGTG
1 AAATGACTGTTTTGCCCTTAT-ATGGTA
** * *
122862 AAACAATTGTTTTGCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
* *
122889 AAATGACTGTTCTGCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
* *
122916 AAATGATTGTTTTGCCCTTCTGA-GGTA
1 AAATGACTGTTTTGCCCTTAT-ATGGTA
*
122943 AAATGATTGTTTTGCCCTTATATGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
*** *
122970 AAATGACTGAAATGCCCTTACATGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
* * *
122997 AATTGACTATTTGGCCC
1 AAATGACTGTTTTGCCC
123014 CTATGTGAGG
Statistics
Matches: 124, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
26 1 0.01
27 123 0.99
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCTTATATGGTA
Found at i:122986 original size:81 final size:81
Alignment explanation
Indices: 122835--123018 Score: 233
Period size: 81 Copynumber: 2.3 Consensus size: 81
122825 CAATTTGATG
* * **
122835 AAATGACTGTTTTGCCCTTATGAGGTGAAACAATTGTTTTGCCCTTATGTGGTAAAATGACTGTT
1 AAATGACTGTTTTGCCCTTATGAGGTAAAACAATTGTTTTGCCCTTATATGGTAAAATGACTGAA
* **
122900 CTGCCCTTATGTGGTA
66 ATGCCCTTACATGGTA
* * **
122916 AAATGATTGTTTTGCCCTTCTGAGGTAAAATGATTGTTTTGCCCTTATATGGTAAAATGACTGAA
1 AAATGACTGTTTTGCCCTTATGAGGTAAAACAATTGTTTTGCCCTTATATGGTAAAATGACTGAA
122981 ATGCCCTTACATGGTA
66 ATGCCCTTACATGGTA
* * * *
122997 AATTGACTATTTGGCCCCTATG
1 AAATGACTGTTTTGCCCTTATG
123019 TGAGGTATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 86 1.00
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.38
Consensus pattern (81 bp):
AAATGACTGTTTTGCCCTTATGAGGTAAAACAATTGTTTTGCCCTTATATGGTAAAATGACTGAA
ATGCCCTTACATGGTA
Found at i:124477 original size:46 final size:46
Alignment explanation
Indices: 124424--124606 Score: 285
Period size: 46 Copynumber: 4.0 Consensus size: 46
124414 TATATATACA
* * * *
124424 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
124470 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
124516 CATCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
124562 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
124607 ATACACTTCC
Statistics
Matches: 127, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 127 1.00
ACGTcount: A:0.25, C:0.32, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:124703 original size:47 final size:47
Alignment explanation
Indices: 124580--124704 Score: 162
Period size: 47 Copynumber: 2.7 Consensus size: 47
124570 ACACATTTCG
* * * * *
124580 CATTAGCCATTCGGCTTTACCACATATATACACTTCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCACTTCCACATTCATCA
* *
124627 CATTGGCCATTCTGCCTTATCACATATATGCA-TGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCACT-TCCACATTCATCA
*
124674 CATTGGCCATTCGGCCTTATCACACATATGC
1 CATTGGCCATTCGGCCTTATCACATATATGC
124705 CATTCGGCCT
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
46 1 0.01
47 67 0.99
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCACTTCCACATTCATCA
Found at i:124706 original size:24 final size:24
Alignment explanation
Indices: 124679--124775 Score: 105
Period size: 24 Copynumber: 4.1 Consensus size: 24
124669 CATCACATTG
124679 GCCATTCGGCCTTATCACACATAT
1 GCCATTCGGCCTTATCACACATAT
124703 GCCATTCGGCCTTATCACACATAT
1 GCCATTCGGCCTTATCACACATAT
* *
124727 G-CATGTTC--ACAT-TCATCACAT-T
1 GCCA--TTCGGCCTTATCA-CACATAT
124749 GGCCATTCGGCCTTATCACACATAT
1 -GCCATTCGGCCTTATCACACATAT
124774 GC
1 GC
124776 ATGTTCACAT
Statistics
Matches: 60, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
22 7 0.12
23 10 0.17
24 36 0.60
25 7 0.12
ACGTcount: A:0.25, C:0.32, G:0.13, T:0.30
Consensus pattern (24 bp):
GCCATTCGGCCTTATCACACATAT
Found at i:124715 original size:71 final size:71
Alignment explanation
Indices: 124632--124775 Score: 270
Period size: 71 Copynumber: 2.0 Consensus size: 71
124622 CATCACATTG
* *
124632 GCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
124697 ACATAT
66 ACATAT
124703 GCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
124768 ACATAT
66 ACATAT
124774 GC
1 GC
124776 ATGTTCACAT
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 71 1.00
ACGTcount: A:0.25, C:0.31, G:0.12, T:0.32
Consensus pattern (71 bp):
GCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
ACATAT
Found at i:124754 original size:47 final size:47
Alignment explanation
Indices: 124703--124935 Score: 394
Period size: 47 Copynumber: 5.0 Consensus size: 47
124693 TCACACATAT
*
124703 GCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
124750 GCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
124797 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
124844 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * **
124891 GCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
124936 AAAATCCTAA
Statistics
Matches: 180, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 180 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:124793 original size:118 final size:118
Alignment explanation
Indices: 124585--124822 Score: 379
Period size: 118 Copynumber: 2.0 Consensus size: 118
124575 TTTCGCATTA
* * * *
124585 GCCATTCGGCTTTACCACATATATACACTTCCACGTTCATCACATTGGCCATTCTGCCTTATCAC
1 GCCATTCGGCCTTACCACACATATACACTTCCACATTCATCACATTGGCCATTCGGCCTTATCAC
*
124650 ATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
66 ACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
* * *
124703 GCCATTCGGCCTTATCACACATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
1 GCCATTCGGCCTTACCACACATATACACT-TCCACATTCATCACATTGGCCATTCGGCCTTATCA
*
124767 CACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT
65 CACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
124821 GC
1 GC
124823 ATGTTCACAT
Statistics
Matches: 110, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
117 1 0.01
118 109 0.99
ACGTcount: A:0.25, C:0.30, G:0.12, T:0.32
Consensus pattern (118 bp):
GCCATTCGGCCTTACCACACATATACACTTCCACATTCATCACATTGGCCATTCGGCCTTATCAC
ACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
Found at i:128804 original size:29 final size:29
Alignment explanation
Indices: 128772--128873 Score: 91
Period size: 29 Copynumber: 3.6 Consensus size: 29
128762 GATTAAAGAA
*
128772 CTCGCACATATAGTGCCTCAATTACCAAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
* * **
128801 CTCGCACAGATAGTG-CTCGATTGAAGAA-
1 CTCGCACACATAGTGCCTCAATT-ACCAAT
* * **
128829 CTCGTACACATAGTGCCTCAACTACTGAT
1 CTCGCACACATAGTGCCTCAATTACCAAT
*
128858 CTGGCACACATAGTGC
1 CTCGCACACATAGTGC
128874 TCGGTTGGAG
Statistics
Matches: 57, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
28 21 0.37
29 36 0.63
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACCAAT
Found at i:128828 original size:57 final size:57
Alignment explanation
Indices: 128748--128905 Score: 199
Period size: 57 Copynumber: 2.8 Consensus size: 57
128738 ACTGATTTCA
* * * *
128748 CACACATAGCGCTCGATTAAAGAACTCGCACATATAGTGCCTCAATTACCAATCTCG
1 CACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATCTCG
* * ** *
128805 CACAGATAGTGCTCGATTGAAGAACTCGTACACATAGTGCCTCAACTACTGATCTGG
1 CACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATCTCG
* * * *
128862 CACACATAGTGCTCGGTTGGAGAACTTGCACACACAGTGCCTCA
1 CACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCA
128906 TAATTCTAGC
Statistics
Matches: 86, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
57 86 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (57 bp):
CACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATCTCG
Found at i:128841 original size:28 final size:27
Alignment explanation
Indices: 128748--128901 Score: 101
Period size: 28 Copynumber: 5.4 Consensus size: 27
128738 ACTGATTTCA
*
128748 CACACATAGCGCTCGATTAAAGAACTCG
1 CACACATAGTGCTCGATT-AAGAACTCG
* * **
128776 CACATATAGTGCCTCAATTACCAATCTCG
1 CACACATAGTG-CTCGATTAAGAA-CTCG
*
128805 CACAGATAGTGCTCGATTGAAGAACTCG
1 CACACATAGTGCTCGATT-AAGAACTCG
* * * * * *
128833 TACACATAGTGCCTCAACTACTGATCTGG
1 CACACATAGTG-CTCGATTA-AGAACTCG
* * *
128862 CACACATAGTGCTCGGTTGGAGAACTTG
1 CACACATAGTGCTCGATT-AAGAACTCG
*
128890 CACACACAGTGC
1 CACACATAGTGC
128902 CTCATAATTC
Statistics
Matches: 95, Mismatches: 25, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
28 52 0.55
29 43 0.45
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (27 bp):
CACACATAGTGCTCGATTAAGAACTCG
Found at i:128979 original size:40 final size:40
Alignment explanation
Indices: 128911--129227 Score: 521
Period size: 40 Copynumber: 8.0 Consensus size: 40
128901 CCTCATAATT
* *
128911 CTAGCATGAATGC-CTTCGAGG-TTTAGCCCGGATATATCA
1 CTAGCACGAATGCTCTTCG-GGACTTAGCCCGGATATATCA
*
128950 CTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATATCA
1 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
*
128990 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCA
1 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
* *
129030 CTAGCACGAATGGTCTTCGGGACTTATCCCGGATATATCA
1 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
* *
129070 CTAGCACGAATGCTCTTCGGAATTTAGCCCGGATATATCA
1 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
*
129110 CTAGCACGAATGCTCTTCGGGACTTAGCTCGGATATATCA
1 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
*
129150 CTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCA
1 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
129190 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
129228 ATAACTCTCA
Statistics
Matches: 258, Mismatches: 18, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
39 13 0.05
40 245 0.95
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCA
Found at i:131863 original size:28 final size:28
Alignment explanation
Indices: 131831--131958 Score: 184
Period size: 29 Copynumber: 4.5 Consensus size: 28
131821 ATAGTAAGTC
*
131831 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
131859 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
131888 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
** * *
131916 CGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
131945 CGCACACTTAGTGC
1 CGCACACTTAGTGC
131959 CAATCTCATG
Statistics
Matches: 91, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
28 45 0.49
29 46 0.51
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:131919 original size:57 final size:57
Alignment explanation
Indices: 131830--131958 Score: 197
Period size: 57 Copynumber: 2.3 Consensus size: 57
131820 TATAGTAAGT
*
131830 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * *
131887 TCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
131944 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
131959 CAATCTCATG
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 62 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:134008 original size:46 final size:46
Alignment explanation
Indices: 133955--134137 Score: 267
Period size: 46 Copynumber: 4.0 Consensus size: 46
133945 TATATATACA
* * * *
133955 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
134001 CATCTCATACACGTTTTGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
134047 CATCTCATACACGTTTCGCATTAGCCATTCAGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
*
134093 CATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
134138 ATACACTTCC
Statistics
Matches: 124, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 124 1.00
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.36
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:134180 original size:22 final size:21
Alignment explanation
Indices: 134154--134275 Score: 64
Period size: 22 Copynumber: 5.3 Consensus size: 21
134144 TTCCACGTTC
134154 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTC-GCCTT
* * * *
134176 ATCACATATATGCACGTTCACATT
1 ATCACAT-T-GGC-CATTCGCCTT
*
134200 CATCACATTGGCCATTTGGCCTT
1 -ATCACATTGGCCA-TTCGCCTT
* * * *
134223 ATCACATATATGCATATTCACATT
1 ATCACAT-T-GGC-CATTCGCCTT
134247 CATCACATTGGCCATTCAGCCTT
1 -ATCACATTGGCCATTC-GCCTT
134270 ATCACA
1 ATCACA
134276 CATATGCATG
Statistics
Matches: 72, Mismatches: 18, Indels: 20
0.65 0.16 0.18
Matches are distributed among these distances:
22 25 0.35
23 14 0.19
24 14 0.19
25 19 0.26
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (21 bp):
ATCACATTGGCCATTCGCCTT
Found at i:134182 original size:47 final size:47
Alignment explanation
Indices: 134111--134489 Score: 544
Period size: 47 Copynumber: 8.1 Consensus size: 47
134101 ACATATTTCG
* * * * * *
134111 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
* *
134158 CATTGGCCATTCTGCCTTATCACATATATGCACGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
134205 CATTGGCCATTTGGCCTTATCACATATATGCATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
134252 CATTGGCCATTCAGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
134299 CATTAGCCATTCGGCCTTATCACACATATGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
134346 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
134393 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * **
134440 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
134487 CAT
1 CAT
134490 AAAATCCTAA
Statistics
Matches: 304, Mismatches: 27, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 304 1.00
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:134322 original size:22 final size:21
Alignment explanation
Indices: 134154--134322 Score: 61
Period size: 22 Copynumber: 7.3 Consensus size: 21
134144 TTCCACGTTC
*
134154 ATCACATTGGCCATTCTGCCTT
1 ATCACATTAGCCATTC-GCCTT
* * *
134176 ATCACATATATGCACGTTCACATT
1 ATCACAT-TA-GC-CATTCGCCTT
* *
134200 CATCACATTGGCCATTTGGCCTT
1 -ATCACATTAGCCA-TTCGCCTT
* * *
134223 ATCACATATATGCATATTCACATT
1 ATCACAT-TA-GC-CATTCGCCTT
*
134247 CATCACATTGGCCATTCAGCCTT
1 -ATCACATTAGCCATTC-GCCTT
* * *
134270 ATCACACATATG-CATGTTCACATT
1 ATCACA-TTA-GCCA--TTCGCCTT
134294 CATCACATTAGCCATTCGGCCTT
1 -ATCACATTAGCCATTC-GCCTT
134317 ATCACA
1 ATCACA
134323 CATATGCATG
Statistics
Matches: 105, Mismatches: 25, Indels: 34
0.64 0.15 0.21
Matches are distributed among these distances:
22 34 0.32
23 21 0.20
24 22 0.21
25 28 0.27
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (21 bp):
ATCACATTAGCCATTCGCCTT
Found at i:144420 original size:43 final size:43
Alignment explanation
Indices: 144295--144436 Score: 132
Period size: 43 Copynumber: 3.3 Consensus size: 43
144285 CGATATGTGT
* *
144295 TTTCGTGTAAGAC-CTCGTCTGGGAC-GTTGGCATCAACT-TATGA
1 TTTCATGTAAGACTCT-GTCTGGGACAG-TGGCATCAA-TATTTGA
* * * *
144338 TTTACGTGTAAGACTATGTCTGGGACA-TCAGTATC-ATATTTGA
1 TTT-CATGTAAGACTCTGTCTGGGACAGT-GGCATCAATATTTGA
*
144381 TTTCATGTAAGACTCTGTCTGGGACAGTGGCATCAATATTTAA
1 TTTCATGTAAGACTCTGTCTGGGACAGTGGCATCAATATTTGA
*
144424 TTACATGTAAGAC
1 TTTCATGTAAGAC
144437 CACGTCTAGG
Statistics
Matches: 82, Mismatches: 10, Indels: 14
0.77 0.09 0.13
Matches are distributed among these distances:
42 26 0.32
43 32 0.39
44 23 0.28
45 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.35
Consensus pattern (43 bp):
TTTCATGTAAGACTCTGTCTGGGACAGTGGCATCAATATTTGA
Found at i:144455 original size:43 final size:43
Alignment explanation
Indices: 144300--144456 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 43
144290 TGTGTTTTCG
* * * *
144300 TGTAAGACCTCGTCTGGGACGTTGGCATCAACT-TATGATTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCAA-TAT-TTAATTACA
* * * ** * * *
144344 TGTAAGACTATGTCTGGGACATCAGTATC-ATATTTGATTTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCAATATTTAATTACA
*
144386 TGTAAGACTC-TGTCTGGGACAG-TGGCATCAATATTTAATTACA
1 TGTAAGAC-CACGTCTGGGAC-GTTGGCATCAATATTTAATTACA
*
144429 TGTAAGACCACGTCTAGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
144457 TGTACAAGCT
Statistics
Matches: 86, Mismatches: 21, Indels: 13
0.72 0.17 0.11
Matches are distributed among these distances:
42 29 0.34
43 35 0.41
44 22 0.26
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCAATATTTAATTACA
Found at i:152194 original size:21 final size:20
Alignment explanation
Indices: 152169--152208 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
152159 TGAGTTGAAC
152169 CGAGCAAAAATCAAGCTCAAA
1 CGAGCAAAAA-CAAGCTCAAA
* *
152190 CGAGCTAAAACGAGCTCAA
1 CGAGCAAAAACAAGCTCAA
152209 GTGAGTTGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.47, C:0.25, G:0.17, T:0.10
Consensus pattern (20 bp):
CGAGCAAAAACAAGCTCAAA
Found at i:156663 original size:42 final size:42
Alignment explanation
Indices: 156617--156696 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
156607 TTATTCGAGC
* *
156617 CTCATATCGGTGCCATATCTCAGATATGGTCTTACATGAAGT
1 CTCATATCGATGCCATATCTCAGATATGATCTTACATGAAGT
* * *
156659 CTCATATTGATGTCATATCTTAGATATGATCTTACATG
1 CTCATATCGATGCCATATCTCAGATATGATCTTACATG
156697 TAATCTTAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (42 bp):
CTCATATCGATGCCATATCTCAGATATGATCTTACATGAAGT
Found at i:163295 original size:19 final size:19
Alignment explanation
Indices: 163271--163309 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
163261 AGGTCCGAGT
163271 TCATAATGGATGCGATTCA
1 TCATAATGGATGCGATTCA
163290 TCATAATGGATGCGATTCA
1 TCATAATGGATGCGATTCA
163309 T
1 T
163310 GTAACATCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (19 bp):
TCATAATGGATGCGATTCA
Found at i:164565 original size:13 final size:13
Alignment explanation
Indices: 164547--164581 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
164537 AGCACATAGG
164547 CGTGTGCCTTGGC
1 CGTGTGCCTTGGC
164560 CGTGTGCCTTGGC
1 CGTGTGCCTTGGC
164573 CGTGTGCCT
1 CGTGTGCCT
164582 CTAAATGAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.00, C:0.31, G:0.37, T:0.31
Consensus pattern (13 bp):
CGTGTGCCTTGGC
Found at i:170220 original size:208 final size:208
Alignment explanation
Indices: 169890--170887 Score: 961
Period size: 208 Copynumber: 4.7 Consensus size: 208
169880 TTAATGTAAT
* * *
169890 TCAGCGAGCTGTTAGAAGTT-ACGATCTTAAATCAA-AGAACTCAAATAATTGGAAGTTGCGATC
1 TCAGTGAGCTGTTAGGAGTTGA-GATCTTAAATCAACA-AACTCAAATAATCGGAAGTTGCGATC
* *
169953 TTAAATCAACTAGCCTTAATAATACCAACTATGAACGTAGGTCAGCAAGTTGTTAGGAGTTGTGA
64 TTAAATCAACTAGCCTTAATAATACCAACTATGAACATAGGTCAGTAAGTTGTTAGGAGTTGTGA
* * *
170018 TATTAAATTAGCTAACTCAAATAATTGGACGCTACGATATTAAATCAACTAGCCTTAATAATATC
129 TATTAAATCAGCTAACTCAAATAATTGAAGGCTACGATATTAAATCAACTAGCCTTAATAATATC
*
170083 AGCTGTGAACATAGG
194 AACTGTGAACATAGG
* * *
170098 TCAGTGAGCTGTTAAGAGTTGAGATC-TAATATCAACGAACTCAAATAATTGGAAGTTGCGATCT
1 TCAGTGAGCTGTTAGGAGTTGAGATCTTAA-ATCAACAAACTCAAATAATCGGAAGTTGCGATCT
** *
170162 TAAATCAACTAGCCTTAATAATACCAACTATGAATGTAGGTCAGTGAGTTGTTAGGAGTTGTGAT
65 TAAATCAACTAGCCTTAATAATACCAACTATGAACATAGGTCAGTAAGTTGTTAGGAGTTGTGAT
* * * ** *
170227 ATTAAATTAGCAAACTCAAATAATTGGAGGCTGTGATATTAAATTAACTAGCCTTAATAATATCA
130 ATTAAATCAGCTAACTCAAATAATTGAAGGCTACGATATTAAATCAACTAGCCTTAATAATATCA
*
170292 GCTGTGAACATAGG
195 ACTGTGAACATAGG
* * * * * *
170306 ACAGTGAGCTGTTAGGAGTTGCGATCTTAAATCAACAAACTCAAATAATAGGATGTTGTGATTTT
1 TCAGTGAGCTGTTAGGAGTTGAGATCTTAAATCAACAAACTCAAATAATCGGAAGTTGCGATCTT
* *
170371 AAATCAACTACCCTTAATAATATCAGCTGTGATAATAATATCAGCTGTGAACATAGGTCA-TCAA
66 AAATCAACTAGCCTTAATAATA-C--C------------A--A-CTATGAACATAGGTCAGT-AA
* * * * * * * *
170435 GCTGCTCAGGAGTTGTGATTTTAAATCAGCTAACTCAAATAATCGAAAGTTGCGATCTTAAATCA
112 GTTG-TTAGGAGTTGTGATATTAAATCAGCTAACTCAAATAATTGAAGGCTACGATATTAAATCA
*
170500 CCTAGCCTTAATAATATCAACTGTGAACATAGG
176 ACTAGCCTTAATAATATCAACTGTGAACATAGG
** * * * *
170533 TCA-TCGAGCTGTTTAGGAGTTGTTATCTTAAATCAGCTAACTCAAATAATCGGAGGCTGCGATC
1 TCAGT-GAGCTG-TTAGGAGTTGAGATCTTAAATCAACAAACTCAAATAATCGGAAGTTGCGATC
* ** * * * * *
170597 TTAAATCAACTAGCCTTAATAATATCAGTTGTGAACATAGGTTATTGAGCTAT-TTAGGAGTTGC
64 TTAAATCAACTAGCCTTAATAATACCAACTATGAACATAGGTCAGTAAG-T-TGTTAGGAGTTGT
* * * * * * *
170661 GATCTTAAATCAACGAACTCGAATAATTGAAGGCTATGATCTTAAATCAGCTAGCCTTAATAATA
127 GATATTAAATCAGCTAACTCAAATAATTGAAGGCTACGATATTAAATCAACTAGCCTTAATAATA
* * * *
170726 TTAATTATGAACGTAGG
192 TCAACTGTGAACATAGG
* * * *
170743 TCAATGAGCTGTTAGGAGTT-ACGATCTTAAAT-AAGCAAACTCAAATAATCAGAGGTAGCGATC
1 TCAGTGAGCTGTTAGGAGTTGA-GATCTTAAATCAA-CAAACTCAAATAATCGGAAGTTGCGATC
** * * * * * *
170806 TTAAATCAACTAGCCTTAATAATACCAGTTGTTAACATAGGTCA-TCGAGCTGTTTAAGAGTTGC
64 TTAAATCAACTAGCCTTAATAATACCAACTATGAACATAGGTCAGT-AAGTTG-TTAGGAGTTGT
*
170870 GATCTTAAATCAGCTAAC
127 GATATTAAATCAGCTAAC
170888 CTTAATAATA
Statistics
Matches: 669, Mismatches: 86, Indels: 69
0.81 0.10 0.08
Matches are distributed among these distances:
207 4 0.01
208 265 0.40
209 117 0.17
210 102 0.15
211 3 0.00
212 1 0.00
213 1 0.00
223 1 0.00
225 3 0.00
226 18 0.03
227 88 0.13
228 66 0.10
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (208 bp):
TCAGTGAGCTGTTAGGAGTTGAGATCTTAAATCAACAAACTCAAATAATCGGAAGTTGCGATCTT
AAATCAACTAGCCTTAATAATACCAACTATGAACATAGGTCAGTAAGTTGTTAGGAGTTGTGATA
TTAAATCAGCTAACTCAAATAATTGAAGGCTACGATATTAAATCAACTAGCCTTAATAATATCAA
CTGTGAACATAGG
Found at i:170393 original size:104 final size:104
Alignment explanation
Indices: 169890--170402 Score: 607
Period size: 104 Copynumber: 4.9 Consensus size: 104
169880 TTAATGTAAT
* * * *
169890 TCAGCGAGCTGTTAGAAGTTACGATCTTAAATCAA-AGAACTCAAATAATTGGAAGTTGCGATCT
1 TCAGTGAGCTGTTAGGAGTTGCGATCTTAAATCAACA-AACTCAAATAATTGGAAGTTGCGATAT
* * * *
169954 TAAATCAACTAGCCTTAATAATACCAACTATGAACGTAGG
65 TAAATCAACTAGCCTTAATAATATCAGCTGTGAACATAGG
** * * * * * * * * *
169994 TCAGCAAGTTGTTAGGAGTTGTGATATTAAATTAGCTAACTCAAATAATTGGACGCTACGATATT
1 TCAGTGAGCTGTTAGGAGTTGCGATCTTAAATCAACAAACTCAAATAATTGGAAGTTGCGATATT
170059 AAATCAACTAGCCTTAATAATATCAGCTGTGAACATAGG
66 AAATCAACTAGCCTTAATAATATCAGCTGTGAACATAGG
* * * *
170098 TCAGTGAGCTGTTAAGAGTTGAGATC-TAATATCAACGAACTCAAATAATTGGAAGTTGCGATCT
1 TCAGTGAGCTGTTAGGAGTTGCGATCTTAA-ATCAACAAACTCAAATAATTGGAAGTTGCGATAT
* * * **
170162 TAAATCAACTAGCCTTAATAATACCAACTATGAATGTAGG
65 TAAATCAACTAGCCTTAATAATATCAGCTGTGAACATAGG
* * * * * * * *
170202 TCAGTGAGTTGTTAGGAGTTGTGATATTAAATTAGCAAACTCAAATAATTGGAGGCTGTGATATT
1 TCAGTGAGCTGTTAGGAGTTGCGATCTTAAATCAACAAACTCAAATAATTGGAAGTTGCGATATT
*
170267 AAATTAACTAGCCTTAATAATATCAGCTGTGAACATAGG
66 AAATCAACTAGCCTTAATAATATCAGCTGTGAACATAGG
* * * * *
170306 ACAGTGAGCTGTTAGGAGTTGCGATCTTAAATCAACAAACTCAAATAATAGGATGTTGTGATTTT
1 TCAGTGAGCTGTTAGGAGTTGCGATCTTAAATCAACAAACTCAAATAATTGGAAGTTGCGATATT
*
170371 AAATCAACTACCCTTAATAATATCAGCTGTGA
66 AAATCAACTAGCCTTAATAATATCAGCTGTGA
170403 TAATAATATC
Statistics
Matches: 342, Mismatches: 64, Indels: 6
0.83 0.16 0.01
Matches are distributed among these distances:
103 3 0.01
104 336 0.98
105 3 0.01
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.30
Consensus pattern (104 bp):
TCAGTGAGCTGTTAGGAGTTGCGATCTTAAATCAACAAACTCAAATAATTGGAAGTTGCGATATT
AAATCAACTAGCCTTAATAATATCAGCTGTGAACATAGG
Found at i:170408 original size:18 final size:18
Alignment explanation
Indices: 170385--170420 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
170375 CAACTACCCT
170385 TAATAATATCAGCTGTGA
1 TAATAATATCAGCTGTGA
170403 TAATAATATCAGCTGTGA
1 TAATAATATCAGCTGTGA
170421 ACATAGGTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (18 bp):
TAATAATATCAGCTGTGA
Found at i:170499 original size:123 final size:122
Alignment explanation
Indices: 170281--170525 Score: 330
Period size: 123 Copynumber: 2.0 Consensus size: 122
170271 TAACTAGCCT
* *
170281 TAATAATATCAGCTGTGAACATAGGACAGTGAGCTGTTAGGAGTTGCGATCTTAAATCAACAAAC
1 TAATAATATCAGCTGTGAACATAGGACAGTAAGCTGTCAGGAGTTGCGATCTTAAATCAACAAAC
* * * * *
170346 TCAAATAATAGGATGTTGTGATTTTAAATCAACTACCCTTAATAATATCAGCTGTGA
66 TCAAATAATAGAAAGTTGCGATCTTAAATCAACTACCCTTAATAATATCAACTGTGA
* * * * *
170403 TAATAATATCAGCTGTGAACATAGGTCA-TCAAGCTGCTCAGGAGTTGTGATTTTAAATCAGCTA
1 TAATAATATCAGCTGTGAACATAGGACAGT-AAGCTG-TCAGGAGTTGCGATCTTAAATCAACAA
* * *
170467 ACTCAAATAATCGAAAGTTGCGATCTTAAATCACCTAGCCTTAATAATATCAACTGTGA
64 ACTCAAATAATAGAAAGTTGCGATCTTAAATCAACTACCCTTAATAATATCAACTGTGA
170526 ACATAGGTCA
Statistics
Matches: 106, Mismatches: 15, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
121 1 0.01
122 32 0.30
123 73 0.69
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.30
Consensus pattern (122 bp):
TAATAATATCAGCTGTGAACATAGGACAGTAAGCTGTCAGGAGTTGCGATCTTAAATCAACAAAC
TCAAATAATAGAAAGTTGCGATCTTAAATCAACTACCCTTAATAATATCAACTGTGA
Found at i:170594 original size:105 final size:105
Alignment explanation
Indices: 170403--170887 Score: 609
Period size: 105 Copynumber: 4.6 Consensus size: 105
170393 TCAGCTGTGA
* * * * * *
170403 TAATAATATCAGCTGTGAACATAGGTCATCAAGCTGCTCAGGAGTTGTGATTTTAAATCAGCTAA
1 TAATAATATCAGTTGTGAACATAGGTCATCGAGCTGTTTAGGAGTTGCGATCTTAAATCAGCTAA
* * *
170468 CTCAAATAATCGAAAGTTGCGATCTTAAATCACCTAGCCT
66 CTCAAATAATCGAAGGCTGCGATCTTAAATCAACTAGCCT
** **
170508 TAATAATATCAACTGTGAACATAGGTCATCGAGCTGTTTAGGAGTTGTTATCTTAAATCAGCTAA
1 TAATAATATCAGTTGTGAACATAGGTCATCGAGCTGTTTAGGAGTTGCGATCTTAAATCAGCTAA
*
170573 CTCAAATAATCGGAGGCTGCGATCTTAAATCAACTAGCCT
66 CTCAAATAATCGAAGGCTGCGATCTTAAATCAACTAGCCT
* * * * *
170613 TAATAATATCAGTTGTGAACATAGGTTATTGAGCTATTTAGGAGTTGCGATCTTAAATCAACGAA
1 TAATAATATCAGTTGTGAACATAGGTCATCGAGCTGTTTAGGAGTTGCGATCTTAAATCAGCTAA
* * ** *
170678 CTCGAATAATTGAAGGCTATGATCTTAAATCAGCTAGCCT
66 CTCAAATAATCGAAGGCTGCGATCTTAAATCAACTAGCCT
* * * * * * *
170718 TAATAATATTAATTATGAACGTAGGTCAAT-GAGCTG-TTAGGAGTTACGATCTTAAATAAGCAA
1 TAATAATATCAGTTGTGAACATAGGTC-ATCGAGCTGTTTAGGAGTTGCGATCTTAAATCAGCTA
170781 ACTCAAATAATC-AGAGG-TAGCGATCTTAAATCAACTAGCCT
65 ACTCAAATAATCGA-AGGCT-GCGATCTTAAATCAACTAGCCT
* * *
170822 TAATAATACCAGTTGTTAACATAGGTCATCGAGCTGTTTAAGAGTTGCGATCTTAAATCAGCTAA
1 TAATAATATCAGTTGTGAACATAGGTCATCGAGCTGTTTAGGAGTTGCGATCTTAAATCAGCTAA
170887 C
66 C
170888 CTTAATAATA
Statistics
Matches: 325, Mismatches: 50, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
103 4 0.01
104 82 0.25
105 237 0.73
106 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (105 bp):
TAATAATATCAGTTGTGAACATAGGTCATCGAGCTGTTTAGGAGTTGCGATCTTAAATCAGCTAA
CTCAAATAATCGAAGGCTGCGATCTTAAATCAACTAGCCT
Found at i:170919 original size:68 final size:68
Alignment explanation
Indices: 170800--170952 Score: 177
Period size: 68 Copynumber: 2.3 Consensus size: 68
170790 ATCAGAGGTA
* ** * * * * * *
170800 GCGATCTTAAATCAACTAGCCTTAATAATACCAGTTGTTAACATAGGTCATCGAGCTGTTTAAGA
1 GCGATCTTAAATCAACTAACCTTAATAATACCAACTGTGAACACAGATCATCAAGCTATGTAAGA
170865 GTT
66 GTT
* * *
170868 GCGATCTTAAATCAGCTAACCTTAATAATATCAACTGTGAACGCAGATCATCAAGCTATGTAAGA
1 GCGATCTTAAATCAACTAACCTTAATAATACCAACTGTGAACACAGATCATCAAGCTATGTAAGA
170933 GTT
66 GTT
170936 --G-TCTTAAATCAACTAAC
1 GCGATCTTAAATCAACTAAC
170953 TCAAATAATT
Statistics
Matches: 72, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
65 15 0.21
66 1 0.01
68 56 0.78
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (68 bp):
GCGATCTTAAATCAACTAACCTTAATAATACCAACTGTGAACACAGATCATCAAGCTATGTAAGA
GTT
Found at i:177193 original size:16 final size:16
Alignment explanation
Indices: 177174--177206 Score: 57
Period size: 16 Copynumber: 2.0 Consensus size: 16
177164 TCGCTTTTTA
177174 TTTTCTTCCTCTTTTCT
1 TTTTC-TCCTCTTTTCT
177191 TTTTCTCCTCTTTTCT
1 TTTTCTCCTCTTTTCT
177207 CTTGTAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTCTCCTCTTTTCT
Found at i:181722 original size:18 final size:19
Alignment explanation
Indices: 181694--181729 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
181684 AAATAATTTT
*
181694 TTTTCAAATTTTAAAATAA
1 TTTTCAAATTTAAAAATAA
181713 TTTT-AAATTTAAAAATA
1 TTTTCAAATTTAAAAATA
181730 TATAAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (19 bp):
TTTTCAAATTTAAAAATAA
Found at i:181735 original size:10 final size:10
Alignment explanation
Indices: 181722--181756 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
181712 ATTTTAAATT
181722 TAAAAATATA
1 TAAAAATATA
*
181732 TAAAAAT-TC
1 TAAAAATATA
181741 TAAAAATATA
1 TAAAAATATA
181751 TAAAAA
1 TAAAAA
181757 AGTTAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 8 0.36
10 14 0.64
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.29
Consensus pattern (10 bp):
TAAAAATATA
Found at i:181746 original size:19 final size:18
Alignment explanation
Indices: 181717--181756 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
181707 AAATAATTTT
181717 AAATTTAAAAATATATAA
1 AAATTTAAAAATATATAA
181735 AAATTCTAAAAATATATAA
1 AAATT-TAAAAATATATAA
181754 AAA
1 AAA
181757 AGTTAATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (18 bp):
AAATTTAAAAATATATAA
Found at i:195487 original size:45 final size:45
Alignment explanation
Indices: 195417--195634 Score: 203
Period size: 45 Copynumber: 4.8 Consensus size: 45
195407 CATTGATTTG
*
195417 AGAAACGAGAAAGACCAT-GATTGAAAGATATTATGGCATTATACC
1 AGAAACGAGAAAGACCATAG-TTGAAAGATACTATGGCATTATACC
* * * *
195462 CGAAATGAGAAAGACAATAGTTGAAAGATACTATGGCATTAAACC
1 AGAAACGAGAAAGACCATAGTTGAAAGATACTATGGCATTATACC
* * * * *
195507 AG-AACGGGTAAGACCCTAGTTGAAAGATACTACGGCACTATACC
1 AGAAACGAGAAAGACCATAGTTGAAAGATACTATGGCATTATACC
* * * **
195551 TGAAGATGA-ATAAGACCATAGTTGAAAGATACTATGGCATTAAAGG
1 AGAA-ACGAGA-AAGACCATAGTTGAAAGATACTATGGCATTATACC
* *
195597 TG-AATGA-ATCAAGACCATAGTTGAAAGATACTATGGCA
1 AGAAACGAGA--AAGACCATAGTTGAAAGATACTATGGCA
195635 CCACCTTGAG
Statistics
Matches: 143, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
44 40 0.28
45 69 0.48
46 34 0.24
ACGTcount: A:0.43, C:0.14, G:0.22, T:0.22
Consensus pattern (45 bp):
AGAAACGAGAAAGACCATAGTTGAAAGATACTATGGCATTATACC
Found at i:195584 original size:90 final size:90
Alignment explanation
Indices: 195427--195635 Score: 262
Period size: 90 Copynumber: 2.3 Consensus size: 90
195417 AGAAACGAGA
* *
195427 AAGACCAT-GATTGAAAGATATTATGGCATTATACCCGAAATGAGAAAGACAATAGTTGAAAGAT
1 AAGACCATAG-TTGAAAGATACTATGGCACTATACCCGAAATGAGAAAGACAATAGTTGAAAGAT
**
195491 ACTATGGCATTAAACCAGAACGGGT-
65 ACTATGGCATTAAACCAGAACGAATC
* * * *
195516 AAGACCCTAGTTGAAAGATACTACGGCACTATACCTGAAGATGA-ATAAGACCATAGTTGAAAGA
1 AAGACCATAGTTGAAAGATACTATGGCACTATACCCGAA-ATGAGA-AAGACAATAGTTGAAAGA
*** *
195580 TACTATGGCATTAAAGGTGAATGAATC
64 TACTATGGCATTAAACCAGAACGAATC
195607 AAGACCATAGTTGAAAGATACTATGGCAC
1 AAGACCATAGTTGAAAGATACTATGGCAC
195636 CACCTTGAGA
Statistics
Matches: 102, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
89 33 0.32
90 42 0.41
91 27 0.26
ACGTcount: A:0.42, C:0.15, G:0.21, T:0.22
Consensus pattern (90 bp):
AAGACCATAGTTGAAAGATACTATGGCACTATACCCGAAATGAGAAAGACAATAGTTGAAAGATA
CTATGGCATTAAACCAGAACGAATC
Found at i:195655 original size:90 final size:89
Alignment explanation
Indices: 195472--195680 Score: 233
Period size: 90 Copynumber: 2.3 Consensus size: 89
195462 CGAAATGAGA
* ** *
195472 AAGACAATAGTTGAAAGATACTATGGCATTAAACCAGAACGGGTAAGACCCTAGTTGAAAGATAC
1 AAGACCATAGTTGAAAGATACTATGGCATTAAACCAGAACGAATAAGACCATAGTTGAAAGATAC
*
195537 TACGGCACTATACCTGAAGATGAAT
66 TACGGCAC-ACACCTGAAGATGAAT
*** *
195562 AAGACCATAGTTGAAAGATACTATGGCATTAAAGGTGAATGAATCAAGACCATAGTTGAAAGATA
1 AAGACCATAGTTGAAAGATACTATGGCATTAAACCAGAACGAAT-AAGACCATAGTTGAAAGATA
* **
195627 CTATGGCAC-CACCTTG-AGATTGTGT
65 CTACGGCACACACC-TGAAGA-TGAAT
* * *
195652 AAGACCCTGGTTGAAAGATACCATGGCAT
1 AAGACCATAGTTGAAAGATACTATGGCAT
195681 CTTCTGAACA
Statistics
Matches: 101, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
89 6 0.06
90 68 0.67
91 27 0.27
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (89 bp):
AAGACCATAGTTGAAAGATACTATGGCATTAAACCAGAACGAATAAGACCATAGTTGAAAGATAC
TACGGCACACACCTGAAGATGAAT
Found at i:195656 original size:45 final size:43
Alignment explanation
Indices: 195427--195679 Score: 163
Period size: 45 Copynumber: 5.7 Consensus size: 43
195417 AGAAACGAGA
* * * *
195427 AAGACCAT-GATTGAAAGATATTATGGCATTATACCCGAAATGAGA-
1 AAGACCATAG-TTGAAAGATACTATGGCA-CA-ACCTGAGATGA-AT
* * * * **
195472 AAGACAATAGTTGAAAGATACTATGGCATTAAACCAGA-ACGGGT
1 AAGACCATAGTTGAAAGATACTATGGCA--CAACCTGAGATGAAT
* *
195516 AAGACCCTAGTTGAAAGATACTACGGCACTATACCTGAAGATGAAT
1 AAGACCATAGTTGAAAGATACTATGGCAC-A-ACCTG-AGATGAAT
* **
195562 AAGACCATAGTTGAAAGATACTATGGCATTAAAGGTGA-ATGAAT
1 AAGACCATAGTTGAAAGATACTATGGCA--CAACCTGAGATGAAT
* **
195606 CAAGACCATAGTTGAAAGATACTATGGCACCACCTTGAGATTGTGT
1 -AAGACCATAGTTGAAAGATACTATGGCACAACC-TGAGA-TGAAT
* * *
195652 AAGACCCTGGTTGAAAGATACCATGGCA
1 AAGACCATAGTTGAAAGATACTATGGCA
195680 TCTTCTGAAC
Statistics
Matches: 166, Mismatches: 29, Indels: 26
0.75 0.13 0.12
Matches are distributed among these distances:
43 2 0.01
44 40 0.24
45 85 0.51
46 38 0.23
47 1 0.01
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.23
Consensus pattern (43 bp):
AAGACCATAGTTGAAAGATACTATGGCACAACCTGAGATGAAT
Found at i:200795 original size:29 final size:30
Alignment explanation
Indices: 200748--200815 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
200738 TGGTCCAAAA
* *
200748 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
200778 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
200808 GCAAATAT
1 GTAAATAT
200816 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:202211 original size:3 final size:3
Alignment explanation
Indices: 202203--202228 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
202193 GTGGAATGGA
202203 GAG GAG GAG GAG GAG GAG GAG GAG GA
1 GAG GAG GAG GAG GAG GAG GAG GAG GA
202229 AAATATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.65, T:0.00
Consensus pattern (3 bp):
GAG
Found at i:203006 original size:46 final size:46
Alignment explanation
Indices: 202938--203200 Score: 368
Period size: 46 Copynumber: 5.7 Consensus size: 46
202928 GTGTGCTCTC
** *
202938 TGATATGAAATGTGTAAAACCATGGTTGAAAGATACCATGGCAATC-
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAA-CA
** *
202984 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
203030 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
*** *
203076 TGACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
*
203122 TGATAAGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
* * *
203168 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 TGATATG-AAATGAATAAGACCATGGTTGAAAGA
203201 CATTATGGCA
Statistics
Matches: 200, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
45 2 0.01
46 198 0.99
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (46 bp):
TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:203517 original size:16 final size:17
Alignment explanation
Indices: 203496--203528 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
203486 ATAATGGAGC
203496 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
203512 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
203529 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:204260 original size:24 final size:23
Alignment explanation
Indices: 204227--204271 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
204217 TTAATAGACT
*
204227 CGTGTGAAGCGACAAACGAAAACC
1 CGTGTCAAGCGACAAAC-AAAACC
204251 CGTGTCAAGCGACAAACAAAA
1 CGTGTCAAGCGACAAACAAAA
204272 GAAAAAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.44, C:0.24, G:0.22, T:0.09
Consensus pattern (23 bp):
CGTGTCAAGCGACAAACAAAACC
Found at i:213849 original size:20 final size:21
Alignment explanation
Indices: 213824--213869 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
213814 TAAAATATAA
213824 ATTTTGGAATTTTT-ATAAA-T
1 ATTTTGGAATTTTTGA-AAATT
213844 ATTTT-GAATTTTTGAAAATT
1 ATTTTGGAATTTTTGAAAATT
213864 ATTTTG
1 ATTTTG
213870 ATTTTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.57
Consensus pattern (21 bp):
ATTTTGGAATTTTTGAAAATT
Found at i:213870 original size:20 final size:19
Alignment explanation
Indices: 213819--213875 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
213809 TTTTTTAAAA
*
213819 TATAAAT-TTTGGAATTTT
1 TATAAATATTTTGAATTTT
213837 TATAAATATTTTGAATTTT
1 TATAAATATTTTGAATTTT
213856 TGA-AAATTATTTTG-ATTTT
1 T-ATAAA-TATTTTGAATTTT
213875 T
1 T
213876 TTAATTTTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
18 7 0.20
19 20 0.57
20 8 0.23
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:217380 original size:27 final size:27
Alignment explanation
Indices: 217349--217526 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
217339 TAAATTGTAC
217349 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
217376 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
217402 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
217430 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
217458 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
217485 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
217512 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
217527 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:217463 original size:82 final size:81
Alignment explanation
Indices: 217350--217505 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
217340 AAATTGTACA
* *
217350 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
217414 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
217431 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
217496 TGCGAGTTGA
65 TGCGAATTGA
217506 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:217517 original size:82 final size:81
Alignment explanation
Indices: 217346--217526 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
217336 GATTAAATTG
* *
217346 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
217411 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
217427 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
217491 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
217509 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
217527 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:219366 original size:171 final size:171
Alignment explanation
Indices: 219077--219415 Score: 615
Period size: 171 Copynumber: 2.0 Consensus size: 171
219067 ATTGCCAACA
*
219077 GCAATGGCATCATCGAGGGTGATGGGGCCACTGTCAAGTCACTGAGCAATATTGTGAATGAGTGC
1 GCAATGGCATCATCGAGGGTGATGGGGCCACTGTCAAGTCACTAAGCAATATTGTGAATGAGTGC
** * * *
219142 ATCGTGGTGTTACCGTATCCTCCAGACCTGCATAATAATTTTTGACGTTCAATGCAAAATATGGT
66 ATCACGGTGTTAACGTATCCTCCAGACCTGCATAATAATTTTCGACATTCAATGCAAAATATGGT
*
219207 AGAAATGATGCTGAAACATAATTCAAATATTGATTGGGATG
131 AGAAATGATGCTGAAACATAATTCAAATATCGATTGGGATG
219248 GCAATGGCATCATCGAGGGTGATGGGGCCACTGTCAAGTCACTAAGCAATATTGTGAATGAGTGC
1 GCAATGGCATCATCGAGGGTGATGGGGCCACTGTCAAGTCACTAAGCAATATTGTGAATGAGTGC
219313 ATCACGGTGTTAACGTATCCTCCAGACCTGCATAATAATTTTCGACATTCAATGCAAAATATGGT
66 ATCACGGTGTTAACGTATCCTCCAGACCTGCATAATAATTTTCGACATTCAATGCAAAATATGGT
219378 AGAAATGATGCTGAAACATAATTCAAATATCGATTGGG
131 AGAAATGATGCTGAAACATAATTCAAATATCGATTGGG
219416 GTTTCATGGG
Statistics
Matches: 161, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
171 161 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.28
Consensus pattern (171 bp):
GCAATGGCATCATCGAGGGTGATGGGGCCACTGTCAAGTCACTAAGCAATATTGTGAATGAGTGC
ATCACGGTGTTAACGTATCCTCCAGACCTGCATAATAATTTTCGACATTCAATGCAAAATATGGT
AGAAATGATGCTGAAACATAATTCAAATATCGATTGGGATG
Found at i:224572 original size:222 final size:222
Alignment explanation
Indices: 224179--224622 Score: 807
Period size: 222 Copynumber: 2.0 Consensus size: 222
224169 TTTATTTAAG
*
224179 CTAGGATGATTATTTTGATTGAATAATATTTATTTGATTCATGCTTATAATATTTGTGCCTTAGT
1 CTAGGATGATTATTTTGATTGAATAATATTTATTTGATTCATGCTTATAATATTTGTGCCTCAGT
* *
224244 CGATCATGTTTTCAATTAAAATCAAGTCTGTATTTCGTTCGTATGTGATTGAAATGCACCTGAAT
66 CGATCATGTTTTCAATTAAAATCAAGTCTGTATTTCGTTCGTACGTGATTGAAATGCACCTAAAT
*
224309 TAGCTGAGCGATCCTAACCAAACGACGGCTAATGAACACATAATTGAAATGTGCATGCTCAATTT
131 TAGCTGAGCGATCCTAACCAAACGACAGCTAATGAACACATAATTGAAATGTGCATGCTCAATTT
*
224374 AGATCTTAACCCGATTAAATTGCAAGT
196 AGATCCTAACCCGATTAAATTGCAAGT
224401 CTAGGATGATTATTTTGATTGAATAATATTTATTTGATTCATGCTTATAATATTTGTGCCTCAGT
1 CTAGGATGATTATTTTGATTGAATAATATTTATTTGATTCATGCTTATAATATTTGTGCCTCAGT
224466 CGATCATGTTTTCAATTAAAATCAAGTCTGTATTTCGTTCGTACGTGATTGAAATGCACCTAAAT
66 CGATCATGTTTTCAATTAAAATCAAGTCTGTATTTCGTTCGTACGTGATTGAAATGCACCTAAAT
* * * *
224531 TAGCTGAGTGATCCTAACCAGATGACAGCTAATGGACACATAATTGAAATGTGCATGCTCAATTT
131 TAGCTGAGCGATCCTAACCAAACGACAGCTAATGAACACATAATTGAAATGTGCATGCTCAATTT
224596 AGATCCTAACCCGATTAAATTGCAAGT
196 AGATCCTAACCCGATTAAATTGCAAGT
224623 TGCATAACAA
Statistics
Matches: 213, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
222 213 1.00
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.36
Consensus pattern (222 bp):
CTAGGATGATTATTTTGATTGAATAATATTTATTTGATTCATGCTTATAATATTTGTGCCTCAGT
CGATCATGTTTTCAATTAAAATCAAGTCTGTATTTCGTTCGTACGTGATTGAAATGCACCTAAAT
TAGCTGAGCGATCCTAACCAAACGACAGCTAATGAACACATAATTGAAATGTGCATGCTCAATTT
AGATCCTAACCCGATTAAATTGCAAGT
Found at i:230849 original size:15 final size:15
Alignment explanation
Indices: 230829--230859 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
230819 TGGCCAGCAG
230829 CACTAAAAGTGTCAC
1 CACTAAAAGTGTCAC
230844 CACTAAAAGTGTCAC
1 CACTAAAAGTGTCAC
230859 C
1 C
230860 CCGATTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.29, G:0.13, T:0.19
Consensus pattern (15 bp):
CACTAAAAGTGTCAC
Found at i:231228 original size:445 final size:445
Alignment explanation
Indices: 230399--231234 Score: 1663
Period size: 445 Copynumber: 1.9 Consensus size: 445
230389 AACGATTCAA
230399 CACTAAAAGTGTCACCCCGATTTCTATTCGGTCAAGGTGGGATTGCGGAATTGTAGAAGGTTGAA
1 CACTAAAAGTGTCACCCCGATTTCTATTCGGTCAAGGTGGGATTGCGGAATTGTAGAAGGTTGAA
230464 CGCCACACCAAAGCAAGGTGATAAGTTCAAAAGAGAACGATAGACGCCACTAGCACGCTAGATAA
66 CGCCACACCAAAGCAAGGTGATAAGTTCAAAAGAGAACGATAGACGCCACTAGCACGCTAGATAA
230529 GTCAGATCGAAACTCGTACGAATTTAGAGAGGAGAAAACTCACTCTTTGAACAAAGTTCATTCAA
131 GTCAGATCGAAACTCGTACGAATTTAGAGAGGAGAAAACTCACTCTTTGAACAAAGTTCATTCAA
230594 ATGATCAAAAGTCAAAAGTCCCTTCAACAAGCCATTTACAACATATTTATAGTCTATAATGTGCC
196 ATGATCAAAAGTCAAAAGTCCCTTCAACAAGCCATTTACAACATATTTATAGTCTATAATGTGCC
230659 CAACCGAATGGTCACAAAAATTCAGATTAAATGAGCAAATTTAATGAACTAAAATAGCTTAAGAG
261 CAACCGAATGGTCACAAAAATTCAGATTAAATGAGCAAATTTAATGAACTAAAATAGCTTAAGAG
230724 CTAAGTTCACTCCTTTGAAGAATCCGAGACCTTGGGGACGGCAATGGCATCAAAAATCTTTAATA
326 CTAAGTTCACTCCTTTGAAGAATCCGAGACCTTGGGGACGGCAATGGCATCAAAAATCTTTAATA
230789 TCCTTCAATAATCAGCCTTGGAAATTCGGATGGCCAGCAGCACTAAAAGTGTCAC
391 TCCTTCAATAATCAGCCTTGGAAATTCGGATGGCCAGCAGCACTAAAAGTGTCAC
230844 CACTAAAAGTGTCACCCCGATTTCTATTCGGTCAAGGTGGGATTGCGGAATTGTAGAAGGTTGAA
1 CACTAAAAGTGTCACCCCGATTTCTATTCGGTCAAGGTGGGATTGCGGAATTGTAGAAGGTTGAA
*
230909 CGCCACACCAAAGCAAGGTGATAAGTTCAAAAGAGAATGATAGACGCCACTAGCACGCTAGATAA
66 CGCCACACCAAAGCAAGGTGATAAGTTCAAAAGAGAACGATAGACGCCACTAGCACGCTAGATAA
230974 GTCAGATCGAAACTCGTACGAATTTAGAGAGGAGAAAACTCACTCTTTGAACAAAGTTCATTCAA
131 GTCAGATCGAAACTCGTACGAATTTAGAGAGGAGAAAACTCACTCTTTGAACAAAGTTCATTCAA
231039 ATGATCAAAAGTCAAAAGTCCCTTCAACAAGCCATTTACAACATATTTATAGTCTATAATGTGCC
196 ATGATCAAAAGTCAAAAGTCCCTTCAACAAGCCATTTACAACATATTTATAGTCTATAATGTGCC
231104 CAACCGAATGGTCACAAAAATTCAGATTAAATGAGCAAATTTAATGAACTAAAATAGCTTAAGAG
261 CAACCGAATGGTCACAAAAATTCAGATTAAATGAGCAAATTTAATGAACTAAAATAGCTTAAGAG
231169 CTAAGTTCACTCCTTTGAAGAATCCGAGACCTTGGGGACGGCAATGGCATCAAAAATCTTTAATA
326 CTAAGTTCACTCCTTTGAAGAATCCGAGACCTTGGGGACGGCAATGGCATCAAAAATCTTTAATA
231234 T
391 T
231235 TCTTATAAAT
Statistics
Matches: 390, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
445 390 1.00
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (445 bp):
CACTAAAAGTGTCACCCCGATTTCTATTCGGTCAAGGTGGGATTGCGGAATTGTAGAAGGTTGAA
CGCCACACCAAAGCAAGGTGATAAGTTCAAAAGAGAACGATAGACGCCACTAGCACGCTAGATAA
GTCAGATCGAAACTCGTACGAATTTAGAGAGGAGAAAACTCACTCTTTGAACAAAGTTCATTCAA
ATGATCAAAAGTCAAAAGTCCCTTCAACAAGCCATTTACAACATATTTATAGTCTATAATGTGCC
CAACCGAATGGTCACAAAAATTCAGATTAAATGAGCAAATTTAATGAACTAAAATAGCTTAAGAG
CTAAGTTCACTCCTTTGAAGAATCCGAGACCTTGGGGACGGCAATGGCATCAAAAATCTTTAATA
TCCTTCAATAATCAGCCTTGGAAATTCGGATGGCCAGCAGCACTAAAAGTGTCAC
Found at i:233529 original size:15 final size:14
Alignment explanation
Indices: 233509--233556 Score: 60
Period size: 15 Copynumber: 3.3 Consensus size: 14
233499 CTCATTTTCA
233509 TCTTTTTCTTTTATT
1 TCTTTTTCTTTT-TT
*
233524 TCTTTTTCTTTTTA
1 TCTTTTTCTTTTTT
*
233538 TCTCATTTCTTTTTT
1 TCT-TTTTCTTTTTT
233553 TCTT
1 TCTT
233557 CTCTCAATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
14 4 0.14
15 24 0.86
ACGTcount: A:0.06, C:0.17, G:0.00, T:0.77
Consensus pattern (14 bp):
TCTTTTTCTTTTTT
Found at i:233561 original size:20 final size:22
Alignment explanation
Indices: 233521--233567 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
233511 TTTTTCTTTT
*
233521 ATTTCTTTTTCTTTTTATCTC-
1 ATTTCTTTTTCTTCTTATCTCA
*
233542 ATTTCTTTTT-TTCTTCTCTCA
1 ATTTCTTTTTCTTCTTATCTCA
233563 ATTTC
1 ATTTC
233568 ATTCAAGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.11, C:0.21, G:0.00, T:0.68
Consensus pattern (22 bp):
ATTTCTTTTTCTTCTTATCTCA
Found at i:234594 original size:12 final size:12
Alignment explanation
Indices: 234552--234611 Score: 63
Period size: 12 Copynumber: 5.1 Consensus size: 12
234542 TTTTTTTAAC
234552 TCGATTTTTTTT
1 TCGATTTTTTTT
*
234564 GTC-ACTTTTTTT
1 -TCGATTTTTTTT
*
234576 TC-CTTTTTTTT
1 TCGATTTTTTTT
234587 TCGATTTTTTTT
1 TCGATTTTTTTT
234599 T-GAATTTTTTTT
1 TCG-ATTTTTTTT
234611 T
1 T
234612 GAATTTCTTC
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
11 12 0.29
12 27 0.66
13 2 0.05
ACGTcount: A:0.08, C:0.10, G:0.07, T:0.75
Consensus pattern (12 bp):
TCGATTTTTTTT
Found at i:234612 original size:12 final size:12
Alignment explanation
Indices: 234579--234617 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
234569 TTTTTTTTCC
234579 TTTTTTTTTCG-A
1 TTTTTTTTT-GAA
234591 TTTTTTTTTGAA
1 TTTTTTTTTGAA
234603 TTTTTTTTTGAA
1 TTTTTTTTTGAA
234615 TTT
1 TTT
234618 CTTCTCTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 1 0.04
12 25 0.96
ACGTcount: A:0.13, C:0.03, G:0.08, T:0.77
Consensus pattern (12 bp):
TTTTTTTTTGAA
Found at i:234717 original size:10 final size:11
Alignment explanation
Indices: 234702--234730 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
234692 CCAACTCAAT
234702 TTTTTTTTGA-
1 TTTTTTTTGAC
234712 TTTTTTTTGAC
1 TTTTTTTTGAC
234723 TTTTTTTT
1 TTTTTTTT
234731 TACGTTACGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.07, C:0.03, G:0.07, T:0.83
Consensus pattern (11 bp):
TTTTTTTTGAC
Found at i:237352 original size:40 final size:40
Alignment explanation
Indices: 237315--237539 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
237305 GCTACTCGTT
* *
237315 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
237355 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
237395 CAAATGCCTTCGGGATTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
237435 TC-AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 -CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
237474 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
237515 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
237540 CATCATTCGA
Statistics
Matches: 163, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
38 3 0.02
39 30 0.18
40 116 0.71
41 14 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:237499 original size:119 final size:120
Alignment explanation
Indices: 237282--237539 Score: 296
Period size: 119 Copynumber: 2.2 Consensus size: 120
237272 AAATCACGTA
* * *
237282 CCTTCGGAATTTAA-CCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAG
1 CCTTCGGGATTTAACCCGGATATAGCTACTCGATCAAATGCCTTCGGGACATAGCCCGGATATAG
* *
237346 TAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACAAATG
66 TAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCACAAA-G
* *
237401 CCTTCGGGATTTAACCCGGATTTAG-TAACTCGCATC-AATGCCTTCGGG-CTTAGCCCGGA-AT
1 CCTTCGGGATTTAACCCGGATATAGCT-ACTCG-ATCAAATGCCTTCGGGACATAGCCCGGATA-
* ** * *
237462 TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAG
63 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAACTTAGCACAAAG
* *
237520 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGATTTAACCCGGA
237540 CATCATTCGA
Statistics
Matches: 119, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
118 4 0.03
119 79 0.66
120 34 0.29
121 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (120 bp):
CCTTCGGGATTTAACCCGGATATAGCTACTCGATCAAATGCCTTCGGGACATAGCCCGGATATAG
TAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCACAAAG
Found at i:238733 original size:56 final size:56
Alignment explanation
Indices: 238666--238841 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
238656 TATTAGTTTA
*
238666 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
*
238722 TTGCCCATGCTTCTTATTTTATTTTTCCATTAATACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
238778 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
238834 TTGCCCAT
1 TTGCCCAT
238842 CATCCCTTGT
Statistics
Matches: 117, Mismatches: 3, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
56 117 1.00
ACGTcount: A:0.23, C:0.22, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:245463 original size:33 final size:33
Alignment explanation
Indices: 245437--245589 Score: 252
Period size: 33 Copynumber: 4.6 Consensus size: 33
245427 CCTTTCCAAG
*
245437 TGGTACACACAAAGTATACCTTTCCTTTTCATA
1 TGGTATACACAAAGTATACCTTTCCTTTTCATA
*
245470 TGGTATACACAAAGTATACCTTTCCTTTTTATA
1 TGGTATACACAAAGTATACCTTTCCTTTTCATA
* *
245503 TGATATACACAAAGTATACCTTCCCTTTTCATA
1 TGGTATACACAAAGTATACCTTTCCTTTTCATA
* *
245536 TGGTATACATAAATTATACCTTTCCTTTTCATA
1 TGGTATACACAAAGTATACCTTTCCTTTTCATA
245569 TGGTATACACAAAGTATACCT
1 TGGTATACACAAAGTATACCT
245590 AACATTTCCA
Statistics
Matches: 109, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 109 1.00
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (33 bp):
TGGTATACACAAAGTATACCTTTCCTTTTCATA
Found at i:245634 original size:32 final size:33
Alignment explanation
Indices: 245575--245639 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 33
245565 CATATGGTAT
*
245575 ACACAAAGTATACCTAACATTTCCAAG-TGTAC
1 ACACAAAGTATACATAACATTTCCAAGTTGTAC
* * * *
245607 ACACAAAGTGTACATAGCCTTTTCAAGTTGTAC
1 ACACAAAGTATACATAACATTTCCAAGTTGTAC
245640 CATTTGGGTA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
32 22 0.81
33 5 0.19
ACGTcount: A:0.37, C:0.23, G:0.12, T:0.28
Consensus pattern (33 bp):
ACACAAAGTATACATAACATTTCCAAGTTGTAC
Found at i:253181 original size:99 final size:99
Alignment explanation
Indices: 253043--253266 Score: 353
Period size: 99 Copynumber: 2.3 Consensus size: 99
253033 GAGGTGTACA
* * *
253043 TTCCTTTTCAAGTGGTATACACAAAGTATACCTTTCCTTTTCATATGGTATACACAAAGTATACC
1 TTCCTTTTCAAGTGATATACACAAAGTATACCTTCCCTTTTCATATGGTATACACAAAGTATACA
253108 TTTCCTTTTCATATGATATACACAAAGTATACCT
66 TTTCCTTTTCATATGATATACACAAAGTATACCT
253142 TTCCTTTTCATA-TGATATACACAAAGTATACCTTCCCTTTTCATATGGTATACACAAAGTATAC
1 TTCCTTTTCA-AGTGATATACACAAAGTATACCTTCCCTTTTCATATGGTATACACAAAGTATAC
*
253206 ATTTCCTTTTCATATGGTATACACAAAGTATACCT
65 ATTTCCTTTTCATATGATATACACAAAGTATACCT
** * *
253241 AACCTTTCCAAGTG-TACACACAAAGT
1 TTCCTTTTCAAGTGATATACACAAAGT
253267 GTACATAGCC
Statistics
Matches: 115, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
98 12 0.10
99 102 0.89
100 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.37
Consensus pattern (99 bp):
TTCCTTTTCAAGTGATATACACAAAGTATACCTTCCCTTTTCATATGGTATACACAAAGTATACA
TTTCCTTTTCATATGATATACACAAAGTATACCT
Done.