Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 1 of 333
Found at i:1296 original size:24 final size:23
Alignment explanation
Indices: 1265--1348 Score: 105
Period size: 24 Copynumber: 3.5 Consensus size: 23
1255 TTTAAATCCA
*
1265 CACACATAGTGCTATAAAAGTCCG
1 CACACATAGTGCTATAAAA-TTCG
* *
1289 CACACATAGTGCCATACAATTTCG
1 CACACATAGTGCTATA-AAATTCG
*
1313 CACACATAGTGCTATTCAAATTCG
1 CACACATAGTGCTA-TAAAATTCG
1337 CACACATAGTGC
1 CACACATAGTGC
1349 CGAAGTCAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
24 49 0.94
25 3 0.06
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.24
Consensus pattern (23 bp):
CACACATAGTGCTATAAAATTCG
Found at i:6415 original size:20 final size:20
Alignment explanation
Indices: 6390--6440 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
6380 TGTCAGTCCT
* *
6390 ATGAATAGTGAAGTTAAGTC
1 ATGAATAGTGAAGTCAAATC
6410 ATGAATAGTGAAGTCAAATC
1 ATGAATAGTGAAGTCAAATC
*
6430 ATGAACAGTGA
1 ATGAATAGTGA
6441 TAATATATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.43, C:0.08, G:0.24, T:0.25
Consensus pattern (20 bp):
ATGAATAGTGAAGTCAAATC
Found at i:9196 original size:21 final size:20
Alignment explanation
Indices: 9159--9201 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
9149 ATCAAATAAA
*
9159 AAAATAAATTAAAAAAAGTG
1 AAAATAAATCAAAAAAAGTG
* *
9179 AAAATCAAATCAACAAAATTG
1 AAAAT-AAATCAAAAAAAGTG
9200 AA
1 AA
9202 TAATGTATAG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.67, C:0.07, G:0.07, T:0.19
Consensus pattern (20 bp):
AAAATAAATCAAAAAAAGTG
Found at i:19259 original size:364 final size:362
Alignment explanation
Indices: 18566--19269 Score: 1086
Period size: 364 Copynumber: 1.9 Consensus size: 362
18556 TTTGAGAGTG
* * * * ** *
18566 AATCTTATTTTCCATGTGTATAATATGTACATAACCAATGGCTTTTCATACATAAGTTTTCTCTC
1 AATCTTATTTTCCAGGTGTACAACAGGTACATAACCAATAACTTTTCATACATAAGTCTTCTCTC
* * *
18631 TTGCAAGTTCTCATCAGTAATATTTTACCACATAATTTTAATTGATAACTTATTCTAAATATTGT
66 TTACAAGTTCCCATCAGTAATATTTTACCACATAATTTTAATTGAGAACTTATTCTAAATATTGT
* * **
18696 AGAGTTATACTCACAGTTTTTAAAAAATACTTGTAACTTTAGATTTATCCAACCATAATAAGCTT
131 AGAGTTATACTCACAGTTTTTAAAAAAAACTTGCAACTTTAGATGCATCCAACCATAATAAGCTT
* * * *
18761 TCGATAGAATTATCATATTCTATTGCTTATGAGCAGATCTTTTACAATCAAATATTTTGCTTTCA
196 TAGATAGAATTATCATATTCTATTGCTCATAAGCAGATCTTTCACAATCAAATATTTTGCTTTCA
* * *
18826 ACCCTTTAATAGGGATAATGACAAAAGAATATCATAAATATTATAAATTAATAATTCAATCCTCT
261 ACCCTTTAATAAGGATAATGACAAAAGAATATCATAAATATTATAAATTAATAACTCAATCC-CC
18891 TTTTTTTATTCATATGCCAAAATCTTCAAATGCCCAAA
325 TTTTTTTATTCATATGCCAAAATCTTCAAATGCCCAAA
*
18929 AATC-TATTTTCCAGGTGTACAACAGGTACATAACCAATAACTTTTCATATATAAGTCTTCTCTC
1 AATCTTATTTTCCAGGTGTACAACAGGTACATAACCAATAACTTTTCATACATAAGTCTTCTCTC
* * *
18993 TTACAAGTTCCCATCAGTAATATTTTACTACATAATTTTAATTGAGAACTTATTTTGAATATTGT
66 TTACAAGTTCCCATCAGTAATATTTTACCACATAATTTTAATTGAGAACTTATTCTAAATATTGT
* *
19058 AGAGTTATACTCACAGTTTTTAAAAAAAAAACTTGCAACTTTAGGTGCATCCAACCATAATAAGT
131 AGAGTTATACTCACAGTTTTT--AAAAAAAACTTGCAACTTTAGATGCATCCAACCATAATAAGC
* * *
19123 TTTAGATAGAATTATCATATTCTATTGCTCATAAGTATATCTTTCACAGTCAAATATTTTGCTTT
194 TTTAGATAGAATTATCATATTCTATTGCTCATAAGCAGATCTTTCACAATCAAATATTTTGCTTT
* *
19188 TAACCCTTTAATAAGGATGATGACAAAAGAATATCATAAATATTATAAATTAATAACTCAATCCC
259 CAACCCTTTAATAAGGATAATGACAAAAGAATATCATAAATATTATAAATTAATAACTCAATCCC
19253 CTTTTTTTATTCATATG
324 CTTTTTTTATTCATATG
19270 AAATATAATC
Statistics
Matches: 307, Mismatches: 32, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
362 132 0.43
363 21 0.07
364 154 0.50
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (362 bp):
AATCTTATTTTCCAGGTGTACAACAGGTACATAACCAATAACTTTTCATACATAAGTCTTCTCTC
TTACAAGTTCCCATCAGTAATATTTTACCACATAATTTTAATTGAGAACTTATTCTAAATATTGT
AGAGTTATACTCACAGTTTTTAAAAAAAACTTGCAACTTTAGATGCATCCAACCATAATAAGCTT
TAGATAGAATTATCATATTCTATTGCTCATAAGCAGATCTTTCACAATCAAATATTTTGCTTTCA
ACCCTTTAATAAGGATAATGACAAAAGAATATCATAAATATTATAAATTAATAACTCAATCCCCT
TTTTTTATTCATATGCCAAAATCTTCAAATGCCCAAA
Found at i:23870 original size:123 final size:122
Alignment explanation
Indices: 23777--24177 Score: 563
Period size: 123 Copynumber: 3.3 Consensus size: 122
23767 TGGACATGGT
* *** * *
23777 GGTGGAGCTTCTGGATATGGTGGTGGAAGTGGTGAAGGAGGTGGAGCTGGTGGTGGTTATGGAGG
1 GGTGGAGCTTCTGGGTATGGCAATGGAGGTGGCGAAGGAGGTGGAGCTGGTGGTGGTTATGGAGG
*
23842 AGCCGGTGGACAAGGAGGTGGTGCTGGTGGTGGCAGTGGTGGAGGCGGAGCCAGTGCA
66 AGCCGGTGGACAAGGAGGTGGTGCTGGTGGTGGCAGTGGTGGAGGAGGAG-CAGTGCA
* *
23900 GGTGGTA-CTTCTGGGTATGGCAATGGAGGTGGCGAAGGAGGTGGAACTGGTAGTGGTTATGGAG
1 GGTGG-AGCTTCTGGGTATGGCAATGGAGGTGGCGAAGGAGGTGGAGCTGGTGGTGGTTATGGAG
* * *
23964 GAGCTGGTGGACATGGAGGTGGTGCTGGTGGTGGCAGTGGTGGAGGAAGAGCTAGTGCA
65 GAGCCGGTGGACAAGGAGGTGGTGCTGGTGGTGGCAGTGGTGGAGGAGGAGC-AGTGCA
* *
24023 GGTGGTGCTTCTGGGTATGGCAATAGAGGTGGCGAAGGAGGTGGAGCTGGTGGTGGTTATGGAGG
1 GGTGGAGCTTCTGGGTATGGCAATGGAGGTGGCGAAGGAGGTGGAGCTGGTGGTGGTTATGGAGG
* * * *
24088 AGCTGGTGAACATGGAGGTGGTGCTGGTGGTGGCAGTGGTGGAGGCA-GAACTAGTGCA
66 AGCCGGTGGACAAGGAGGTGGTGCTGGTGGTGGCAGTGGTGGAGG-AGGAGC-AGTGCA
* *
24146 GGTGGTGCTTCTAGGTATGGCAATGGAGGTGG
1 GGTGGAGCTTCTGGGTATGGCAATGGAGGTGG
24178 TACTAGTGGC
Statistics
Matches: 254, Mismatches: 20, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
122 1 0.00
123 251 0.99
124 2 0.01
ACGTcount: A:0.18, C:0.09, G:0.50, T:0.23
Consensus pattern (122 bp):
GGTGGAGCTTCTGGGTATGGCAATGGAGGTGGCGAAGGAGGTGGAGCTGGTGGTGGTTATGGAGG
AGCCGGTGGACAAGGAGGTGGTGCTGGTGGTGGCAGTGGTGGAGGAGGAGCAGTGCA
Found at i:23995 original size:246 final size:249
Alignment explanation
Indices: 23705--24177 Score: 625
Period size: 246 Copynumber: 1.9 Consensus size: 249
23695 TGGTGGCGGG
* **
23705 TATGGAGAAGCCGGTGGACATGGAGGTGGTGGTGGCAGTGGTGGTGGGGGAGGTAGTGCAGGTGG
1 TATGGAGAAGCCGGTGGACATGGA-G-GGTGGTGGCA-TGGTGGT--GGCA-GTAGTGCAGGAAG
** *** * *
23770 A-C-A-TGGTGGTGGAGCTTCTGGATATGGTGGTGGAAGTGGTGAAGGAGGTGGAGCTGGTGGTG
60 AGCTAGTGCAGGTGGAGCTTCTGGATATGGCAATAGAAGTGGCGAAGGAGGTGGAGCTGGTGGTG
* * *
23832 GTTATGGAGGAGCCGGTGGACAAGGAGGTGGTGCTGGTGGTGGCAGTGGTGGAGGCGGAGCCAGT
125 GTTATGGAGGAGCCGGTGAACAAGGAGGTGGTGCTGGTGGTGGCAGTGGTGGAGGCAGAACCAGT
*
23897 GCAGGTGGTACTTCTGGGTATGGCAATGGAGGTGGCGAAGGAGGTGGAACTGGTAGTGGT
190 GCAGGTGGTACTTCTAGGTATGGCAATGGAGGTGGCGAAGGAGGTGGAACTGGTAGTGGT
* * * *
23957 TATGGAGGAGCTGGTGGACATGGA-GGTGGT-GC-TGGTGGTGGCAGTGGTGGAGGAAGAGCTAG
1 TATGGAGAAGCCGGTGGACATGGAGGGTGGTGGCATGGTGGTGGCAGTAGTGCAGGAAGAGCTAG
* * *
24019 TGCAGGTGGTGCTTCTGGGTATGGCAATAGAGGTGGCGAAGGAGGTGGAGCTGGTGGTGGTTATG
66 TGCAGGTGGAGCTTCTGGATATGGCAATAGAAGTGGCGAAGGAGGTGGAGCTGGTGGTGGTTATG
* * *
24084 GAGGAGCTGGTGAACATGGAGGTGGTGCTGGTGGTGGCAGTGGTGGAGGCAGAACTAGTGCAGGT
131 GAGGAGCCGGTGAACAAGGAGGTGGTGCTGGTGGTGGCAGTGGTGGAGGCAGAACCAGTGCAGGT
*
24149 GGTGCTTCTAGGTATGGCAATGGAGGTGG
196 GGTACTTCTAGGTATGGCAATGGAGGTGG
24178 TACTAGTGGC
Statistics
Matches: 193, Mismatches: 25, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
243 10 0.05
244 4 0.02
245 1 0.01
246 148 0.77
248 2 0.01
249 6 0.03
252 22 0.11
ACGTcount: A:0.18, C:0.09, G:0.50, T:0.22
Consensus pattern (249 bp):
TATGGAGAAGCCGGTGGACATGGAGGGTGGTGGCATGGTGGTGGCAGTAGTGCAGGAAGAGCTAG
TGCAGGTGGAGCTTCTGGATATGGCAATAGAAGTGGCGAAGGAGGTGGAGCTGGTGGTGGTTATG
GAGGAGCCGGTGAACAAGGAGGTGGTGCTGGTGGTGGCAGTGGTGGAGGCAGAACCAGTGCAGGT
GGTACTTCTAGGTATGGCAATGGAGGTGGCGAAGGAGGTGGAACTGGTAGTGGT
Found at i:24149 original size:42 final size:41
Alignment explanation
Indices: 23980--24154 Score: 103
Period size: 42 Copynumber: 4.2 Consensus size: 41
23970 GTGGACATGG
* * *
23980 AGGTGGTGCTGGTGGTGGCAGTGGTGGAGGAAGAGCTAGTGC
1 AGGTGGTGCTGGTGGTGGCAGTGGAGGAGGCAGAAC-AGTGC
** * * *
24022 AGGTGGTGCTTCTGGGTATGGCAATAGAGGTGGC-G-A-AG-G-
1 AGGTGGTGCTGGT-GG--TGGCAGTGGAGGAGGCAGAACAGTGC
* * ** *
24061 AGGTGGAGCTGGTGGTGGTTA-TGGAGGAGCTGGTGAACA-TGG
1 AGGTGGTGCTGGTGGTGG-CAGTGGAGGAG--GCAGAACAGTGC
*
24103 AGGTGGTGCTGGTGGTGGCAGTGGTGGAGGCAGAACTAGTGC
1 AGGTGGTGCTGGTGGTGGCAGTGGAGGAGGCAGAAC-AGTGC
24145 AGGTGGTGCT
1 AGGTGGTGCT
24155 TCTAGGTATG
Statistics
Matches: 98, Mismatches: 21, Indels: 28
0.67 0.14 0.19
Matches are distributed among these distances:
36 9 0.09
37 1 0.01
38 3 0.03
39 11 0.11
40 7 0.07
41 6 0.06
42 47 0.48
43 2 0.02
44 1 0.01
45 11 0.11
ACGTcount: A:0.18, C:0.10, G:0.50, T:0.23
Consensus pattern (41 bp):
AGGTGGTGCTGGTGGTGGCAGTGGAGGAGGCAGAACAGTGC
Found at i:24174 original size:69 final size:69
Alignment explanation
Indices: 24099--24246 Score: 206
Period size: 69 Copynumber: 2.1 Consensus size: 69
24089 GCTGGTGAAC
* * * * *
24099 ATGGAGGTGGTGCTGGTGGTGGCAGTGGTGGAGGCAGAACTAGTGCAGGTGGTGCTTCTAGGTAT
1 ATGGAGGTGGTACTAGTGGCGGCAGTGGTGGAGGCAGAACTAGTGCAAGTGGCGCTTCTAGGTAT
24164 GGCA
66 GGCA
* * * * *
24168 ATGGAGGTGGTACTAGTGGCGGTAGTGGTGGAGGCGGAGCTAGTGTAAGTGGCGCTTCTGGGTAT
1 ATGGAGGTGGTACTAGTGGCGGCAGTGGTGGAGGCAGAACTAGTGCAAGTGGCGCTTCTAGGTAT
24233 GGCA
66 GGCA
24237 ATGGAGGTGG
1 ATGGAGGTGG
24247 CAACGGAGGT
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.18, C:0.11, G:0.47, T:0.24
Consensus pattern (69 bp):
ATGGAGGTGGTACTAGTGGCGGCAGTGGTGGAGGCAGAACTAGTGCAAGTGGCGCTTCTAGGTAT
GGCA
Found at i:33974 original size:3 final size:3
Alignment explanation
Indices: 33966--34002 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
33956 AAAATTGCAA
33966 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
34003 GAGAATTATC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:34640 original size:12 final size:12
Alignment explanation
Indices: 34623--34647 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
34613 ACCCAAAACC
34623 CTTAGCCCAAAA
1 CTTAGCCCAAAA
34635 CTTAGCCCAAAA
1 CTTAGCCCAAAA
34647 C
1 C
34648 ACTAACCCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.36, G:0.08, T:0.16
Consensus pattern (12 bp):
CTTAGCCCAAAA
Found at i:35377 original size:3 final size:3
Alignment explanation
Indices: 35369--35401 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
35359 TGCATTTTAA
35369 TAT TAT TAT TAT TAT TAT TAT TAT TAT ATAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TA
35402 GTGTATATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:35504 original size:3 final size:3
Alignment explanation
Indices: 35496--35528 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
35486 TGTATTTCTA
35496 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
35529 ATGGTAGTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:35653 original size:16 final size:15
Alignment explanation
Indices: 35622--35664 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
35612 CCTTCATTCC
*
35622 ATTATTATTATTACT
1 ATTATTATTTTTACT
35637 ATTATTATATTTTACT
1 ATTATTAT-TTTTACT
*
35653 ATCATTATTTTT
1 ATTATTATTTTT
35665 CATACGTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTATTATTTTTACT
Found at i:35840 original size:11 final size:13
Alignment explanation
Indices: 35810--35841 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
35800 TTATTATAAT
35810 TTATTATTGTTAC
1 TTATTATTGTTAC
35823 TTATTATT-TTAC
1 TTATTATTGTTAC
35835 -TATTATT
1 TTATTATT
35842 ATCTAATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.37
12 4 0.21
13 8 0.42
ACGTcount: A:0.25, C:0.06, G:0.03, T:0.66
Consensus pattern (13 bp):
TTATTATTGTTAC
Found at i:36033 original size:22 final size:21
Alignment explanation
Indices: 36003--36062 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
35993 TTATTATATC
*
36003 TTTTACTATTATTATTGTTGTA
1 TTTTACTATTATT-TTGTTATA
* *
36025 TTTTTCTATTATTGTTATTATA
1 TTTTACTATTATT-TTGTTATA
*
36047 TTTTCCT-TTATTTTGT
1 TTTTACTATTATTTTGT
36063 ATTTACTTAT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
20 3 0.09
21 5 0.16
22 24 0.75
ACGTcount: A:0.18, C:0.07, G:0.07, T:0.68
Consensus pattern (21 bp):
TTTTACTATTATTTTGTTATA
Found at i:36036 original size:19 final size:20
Alignment explanation
Indices: 36012--36066 Score: 62
Period size: 19 Copynumber: 2.8 Consensus size: 20
36002 CTTTTACTAT
36012 TATTATTGTTGTATTTTT-C
1 TATTATTGTTGTATTTTTCC
*
36031 TATTATTGTTATTATATTTTCC
1 TATTATTGTT-GTAT-TTTTCC
36053 T-TTATT-TTGTATTT
1 TATTATTGTTGTATTT
36067 ACTTATACGT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
18 2 0.06
19 13 0.42
20 5 0.16
21 9 0.29
22 2 0.06
ACGTcount: A:0.18, C:0.05, G:0.07, T:0.69
Consensus pattern (20 bp):
TATTATTGTTGTATTTTTCC
Found at i:36037 original size:3 final size:3
Alignment explanation
Indices: 35798--36018 Score: 66
Period size: 3 Copynumber: 74.3 Consensus size: 3
35788 TTCTCATCAC
* * *
35798 TAT TAT TAT AATT TAT TAT TGT TACT TAT TAT T-T TAC TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
35844 CTAA TA- TAT CAT CAT TAT CAT TAT T-T TCAT TAT AACT TAA TA- GAT
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TA-T TAT TAT TAT
* * * *
35889 TAT TAT TAT TAT TAT TAT TAT TAG CAC TACT T-T TAT TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT
* * * ** * * * *
35934 T-T AAT ATAT TAT TTT TAC TAT TAT CGT CA- TAT TGT TAC TAT TAC
1 TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
35978 TAT TA- TAT TAT TA- TGT TAT TA- TAT CTTT TAC TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT T
36019 GTTGTATTTT
Statistics
Matches: 155, Mismatches: 45, Indels: 36
0.66 0.19 0.15
Matches are distributed among these distances:
2 16 0.10
3 123 0.79
4 16 0.10
ACGTcount: A:0.32, C:0.09, G:0.03, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:39978 original size:15 final size:15
Alignment explanation
Indices: 39958--39988 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
39948 TTTACTTTCC
39958 AGAGAGGTAGAAAAG
1 AGAGAGGTAGAAAAG
39973 AGAGAGGTAGAAAAG
1 AGAGAGGTAGAAAAG
39988 A
1 A
39989 AAATCTGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.39, T:0.06
Consensus pattern (15 bp):
AGAGAGGTAGAAAAG
Found at i:48012 original size:205 final size:205
Alignment explanation
Indices: 47660--48645 Score: 1541
Period size: 205 Copynumber: 4.9 Consensus size: 205
47650 GTAATAGGCC
* * *
47660 ACACATAGCAGATCTCGCCTTCAGATG-TTTATGCTGAAGCGGATCCAAGATGGTTTGGCAT-CT
1 ACACATAGCAGATCTCACCTTCAGATGATTT-CGCTGAAGCAGATCCAAGATGGTTTGGCATCCT
47723 TGTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAA
65 TGTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAA
47788 ATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTG
130 ATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTG
47853 ATGGAGAGCAG
195 ATGGAGAGCAG
47864 ACACATAGCAGATCTCACCTTCAGATGATTTCGCTGAAGCAGATCCAAGATGGTTTGGCATCCTT
1 ACACATAGCAGATCTCACCTTCAGATGATTTCGCTGAAGCAGATCCAAGATGGTTTGGCATCCTT
*
47929 GTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACGATGAAGCAAA
66 GTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAA
*
47994 TCTAAGATGATCTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
131 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
48059 TGGAGAGCAG
196 TGGAGAGCAG
48069 ACACATAGCAGATCTCACCTTCAGATGATTTCGCTGAAGCAGATCCAAGATGGTTTGGCATCCTT
1 ACACATAGCAGATCTCACCTTCAGATGATTTCGCTGAAGCAGATCCAAGATGGTTTGGCATCCTT
* * *
48134 GTGTTTACAAGGAACAAATCGAAGACATAGCTGGTTTGGCTTTCATGTGATTACGATGAAGCAAA
66 GTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAA
*
48199 TCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAA---T---A--TTCACTTTGA
131 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
*
48256 TGGAAAGCAG
196 TGGAGAGCAG
* * * *
48266 ACACATAGCAGATCTCGCCTTCAGACGATTTCACTGAAGCAGATCCAAGATGGTTTGGTATCCTT
1 ACACATAGCAGATCTCACCTTCAGATGATTTCGCTGAAGCAGATCCAAGATGGTTTGGCATCCTT
* * *
48331 GTGTTTACAAGGAACAAATCGAAGACATAGTTGATTTGGCTTTCACGTGATTATGA-GAAAGCAA
66 GTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATG-AAGCAA
*
48395 ATCTAAGATGATTTGTCGTCTTTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTG
130 ATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTG
48460 ATGGA-ATGCAG
195 ATGGAGA-GCAG
* * *
48471 ACACATAGCAGATCTCACCTTCGGATG-TTTATGCTGAAGCGGATCCAAGATGGTTTGGCATCCT
1 ACACATAGCAGATCTCACCTTCAGATGATTT-CGCTGAAGCAGATCCAAGATGGTTTGGCATCCT
* * * * * * *
48535 TATGCTTACAAGGAGCAAATCGAA-TCATAGTTGATTTGGCTTTCACGTGCTTACGTTAAAGCAA
65 TGTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAA
* * * * *
48599 ATCTAAGATGATTTGGCATCTCTGTATTGTCAGGGAACAAATCGAAG
130 ATCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAG
48646 AAATAGATCT
Statistics
Matches: 727, Mismatches: 41, Indels: 28
0.91 0.05 0.04
Matches are distributed among these distances:
196 1 0.00
197 182 0.25
199 1 0.00
200 1 0.00
202 1 0.00
203 1 0.00
204 133 0.18
205 407 0.56
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (205 bp):
ACACATAGCAGATCTCACCTTCAGATGATTTCGCTGAAGCAGATCCAAGATGGTTTGGCATCCTT
GTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAA
TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
TGGAGAGCAG
Found at i:48414 original size:402 final size:405
Alignment explanation
Indices: 47660--48644 Score: 1572
Period size: 402 Copynumber: 2.4 Consensus size: 405
47650 GTAATAGGCC
*
47660 ACACATAGCAGATCTCGCCTTCAGATGTTTATGCTGAAGCGGATCCAAGATGGTTTGGCAT-CTT
1 ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCGGATCCAAGATGGTTTGGCATCCTT
47724 GTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAA
66 GTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAA
*
47789 TCTAAGATGATTTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCACTTTGA
131 TCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAA--TT-G-A-CTTCACTTTGA
* * *
47854 TGGAGAGCAGACACATAGCAGATCTCACCTTCAGATGATTTCGCTGAAGCAGATCCAAGATGGTT
191 TGGAAAGCAGACACATAGCAGATCTCACCTTCAGACGATTTCACTGAAGCAGATCCAAGATGGTT
* *
47919 TGGCATCCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCATGTGATTACG
256 TGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACG
47984 ATGAAGCAAATCTAAGATGATCTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATC
321 ATGAAGCAAATCTAAGATGATCTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATC
48049 TTCACTTTGATGGAGA-GCAG
386 TTCACTTTGATGGA-ATGCAG
* *
48069 ACACATAGCAGATCTCACCTTCAGATGATTT-CGCTGAAGCAGATCCAAGATGGTTTGGCATCCT
1 ACACATAGCAGATCTCACCTTCAGATG-TTTATGCTGAAGCGGATCCAAGATGGTTTGGCATCCT
* * *
48133 TGTGTTTACAAGGAACAAATCGAAGACATAGCTGGTTTGGCTTTCATGTGATTACGATGAAGCAA
65 TGTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAA
48198 ATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAA-T-A-TTCACTTTGATGGA
130 ATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAATTGACTTCACTTTGATGGA
* *
48260 AAGCAGACACATAGCAGATCTCGCCTTCAGACGATTTCACTGAAGCAGATCCAAGATGGTTTGGT
195 AAGCAGACACATAGCAGATCTCACCTTCAGACGATTTCACTGAAGCAGATCCAAGATGGTTTGGC
* *
48325 ATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGTTGATTTGGCTTTCACGTGATTATGA-GA
260 ATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATG-
* *
48389 AAGCAAATCTAAGATGATTTGTCGTCTTTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTC
324 AAGCAAATCTAAGATGATCTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTC
48454 ACTTTGATGGAATGCAG
389 ACTTTGATGGAATGCAG
*
48471 ACACATAGCAGATCTCACCTTCGGATGTTTATGCTGAAGCGGATCCAAGATGGTTTGGCATCCTT
1 ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCGGATCCAAGATGGTTTGGCATCCTT
* * * * * * *
48536 ATGCTTACAAGGAGCAAATCGAA-TCATAGTTGATTTGGCTTTCACGTGCTTACGTTAAAGCAAA
66 GTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAA
* * * *
48600 TCTAAGATGATTTGGCATCTCTGTATTGTCAGGGAACAAATCGAA
131 TCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAA
48645 GAAATAGATC
Statistics
Matches: 536, Mismatches: 35, Indels: 18
0.91 0.06 0.03
Matches are distributed among these distances:
401 80 0.15
402 288 0.54
404 1 0.00
407 1 0.00
409 54 0.10
410 112 0.21
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (405 bp):
ACACATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCGGATCCAAGATGGTTTGGCATCCTT
GTGTTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAAGCAAA
TCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACGAATCGAATTGACTTCACTTTGATGGAA
AGCAGACACATAGCAGATCTCACCTTCAGACGATTTCACTGAAGCAGATCCAAGATGGTTTGGCA
TCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGATTACGATGAA
GCAAATCTAAGATGATCTGTCGTCTCTGTATCGTCAGAGAACGAATCGAAGTTTGGCATCTTCAC
TTTGATGGAATGCAG
Found at i:49722 original size:3 final size:3
Alignment explanation
Indices: 49714--49752 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
49704 TGCATTTTAA
49714 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
49753 GTACATATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:49979 original size:16 final size:15
Alignment explanation
Indices: 49948--49990 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
49938 CCTTCATTCC
*
49948 ATTATTATTATTACT
1 ATTATTATTTTTACT
49963 ATTATTATATTTTACT
1 ATTATTAT-TTTTACT
*
49979 ATCATTATTTTT
1 ATTATTATTTTT
49991 CATACGTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTATTATTTTTACT
Found at i:50168 original size:11 final size:13
Alignment explanation
Indices: 50138--50169 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
50128 TTATTATAAT
50138 TTATTATTGTTAC
1 TTATTATTGTTAC
50151 TTATTATT-TTAC
1 TTATTATTGTTAC
50163 -TATTATT
1 TTATTATT
50170 ATCTAATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.37
12 4 0.21
13 8 0.42
ACGTcount: A:0.25, C:0.06, G:0.03, T:0.66
Consensus pattern (13 bp):
TTATTATTGTTAC
Found at i:50361 original size:22 final size:22
Alignment explanation
Indices: 50331--50391 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
50321 TTATTATATC
*
50331 TTTTACTATTATTATTGTTGTA
1 TTTTACTATTATTATTGTTATA
* * *
50353 TTTTTCTATTATTGTTATTATA
1 TTTTACTATTATTATTGTTATA
* *
50375 TTTTCCT-TTATTTTTGT
1 TTTTACTATTATTATTGT
50392 ATTTACTTAT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.18, C:0.07, G:0.07, T:0.69
Consensus pattern (22 bp):
TTTTACTATTATTATTGTTATA
Found at i:50365 original size:3 final size:3
Alignment explanation
Indices: 50126--50346 Score: 75
Period size: 3 Copynumber: 74.3 Consensus size: 3
50116 TTCTCATCAC
* * *
50126 TAT TAT TAT AATT TAT TAT TGT TACT TAT TAT T-T TAC TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
* * * * * *
50172 CTAA TA- TAT CAT TAT TAT CAT TAT T-T TCAT TAT AACT TAA TA- GAT
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TA-T TAT TAT TAT
* * * *
50217 TAT TAT TAT TAT TAT TAT TAT TAG CAC TACT T-T TAT TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT
* * * ** * * * *
50262 T-T AAT ATAT TAT TTT TAC TAT TAT CGT CA- TAT TGT TAC TAT TAC
1 TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
50306 TAT TA- TAT TAT TA- TGT TAT TA- TAT CTTT TAC TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT T
50347 GTTGTATTTT
Statistics
Matches: 155, Mismatches: 45, Indels: 36
0.66 0.19 0.15
Matches are distributed among these distances:
2 16 0.10
3 123 0.79
4 16 0.10
ACGTcount: A:0.32, C:0.08, G:0.03, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:56693 original size:135 final size:135
Alignment explanation
Indices: 56511--56870 Score: 605
Period size: 135 Copynumber: 2.7 Consensus size: 135
56501 GAGGTGGCAA
* *
56511 TGGTGGTGGTGAAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGTGGTGGAGGTG
1 TGGTGGTGGTGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGCGGTGGAGGTG
* * *
56576 GTGAAGGAGGCGGAGCTGGTGGTGCTGGCGGGTATGGAGGAGCGGGTGGA-ATTGGAGGTGGTGG
66 GTGAAGGAGGTGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGTGGACA-TGGAGGTGGTGG
56640 TGGTAG
130 TGGTAG
* * *
56646 TGGTGGTGGCGGAGCTAGTGCCGGTGGATATGGTGGTGGAGCTTCTGGATATGGCGGTGGAAGTG
1 TGGTGGTGGTGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGCGGTGGAGGTG
*
56711 GCGAAGGAGGTGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGTGGACATGGAGGTGGTGGT
66 GTGAAGGAGGTGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGTGGACATGGAGGTGGTGGT
56776 GGTAG
131 GGTAG
* *
56781 TGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGCGGTGGGGGTG
1 TGGTGGTGGTGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGCGGTGGAGGTG
56846 GTGAAGGAGGTGGAGCTGGTGGTGC
66 GTGAAGGAGGTGGAGCTGGTGGTGC
56871 AAGTGGACAT
Statistics
Matches: 209, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
135 208 1.00
136 1 0.00
ACGTcount: A:0.15, C:0.09, G:0.53, T:0.23
Consensus pattern (135 bp):
TGGTGGTGGTGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGCGGTGGAGGTG
GTGAAGGAGGTGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGTGGACATGGAGGTGGTGGT
GGTAG
Found at i:56813 original size:270 final size:269
Alignment explanation
Indices: 56511--57343 Score: 1261
Period size: 270 Copynumber: 3.2 Consensus size: 269
56501 GAGGTGGCAA
* *
56511 TGGTGGTGGTGAAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGTGGTGGAGGTG
1 TGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGTGGTGGAGGTG
56576 GTGAAGGAGGCGGAGCTGGTGGTGCTGGCGGGTATGGAGGAGCGGGTGGA-ATTGGAGGTGGTGG
66 GTGAAGGAGGCGGAGCTGGTGGTGCTGGCGGGTATGGAGGAGC-GGTGGACA-TGGAGGTGGTGG
* *
56640 TGGTAGTGGTGGTGGCGGAGCTAGTGCCGGTGGATATGGTGGTGGAGCTTCTGGATATGGCGGTG
129 TGGTAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGCGGTG
* *
56705 GAAGTGGCGAAGGAGGTGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGTGGACATGGAGGT
194 GAGGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGTGGACATGGAGGT
56770 GGTGGTGGTAG
259 GGTGGTGGTAG
* *
56781 TGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGCGGTGGGGGTG
1 TGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGTGGTGGAGGTG
*
56846 GTGAAGGAGGTGGAGCTGGT-G-G-T-GC--------A--A---GTGGACATGGAGGTGGTGGTG
66 GTGAAGGAGGCGGAGCTGGTGGTGCTGGCGGGTATGGAGGAGCGGTGGACATGGAGGTGGTGGTG
*
56894 GTAGTGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGCGGTGGA
131 GTAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGCGGTGGA
* *
56959 GGTGGCGAAGGAGGCGGAGTTGGTGGTGCCGGTGGGTATGGAGGAGCCGGTGGACATGGAGGTGG
196 GGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGTGGACATGGAGGTGG
57024 TGGTGGTAG
261 TGGTGGTAG
* * *
57033 TGGTGGCGGCGGAGCTAATGCAGGTGGATATGGTGGTAGAGCTTCTGGATATGGTGGTGGAGGTG
1 TGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGTGGTGGAGGTG
* * *
57098 GCGAAGGAGGCGGAGCTGGTGGTGCCGGTGGGTATGGAGGAGCCGGTGGACATGGAGGTGGTGGT
66 GTGAAGGAGGCGGAGCTGGTGGTGCTGGCGGGTATGGAGGAG-CGGTGGACATGGAGGTGGTGGT
* * *
57163 GGTAGTGGTGGCGGCGGAGCTAGTGCTGGTGGATATGGTGGTGGAGCTTCAGGATATGGTGGTGG
130 GGTAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGCGGTGG
* *
57228 AGGTGGTGAAGGAGGCGGAGCTGGTGGTGCTGGCGGGTATGGAGGAGCCGGTGGACATGGAGGTG
195 AGGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGTGGACATGGAGGTG
*
57293 GTGGTGGAAG
260 GTGGTGGTAG
* * * *
57303 TGGTGGTGGAGGAGCAAGTGCAGGAGGATATGGTGGTGGAG
1 TGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGGTGGAG
57344 GGGCACATGC
Statistics
Matches: 508, Mismatches: 36, Indels: 38
0.87 0.06 0.07
Matches are distributed among these distances:
252 229 0.45
253 2 0.00
254 1 0.00
256 2 0.00
258 1 0.00
264 1 0.00
266 3 0.01
267 1 0.00
268 1 0.00
269 1 0.00
270 266 0.52
ACGTcount: A:0.16, C:0.09, G:0.53, T:0.22
Consensus pattern (269 bp):
TGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGTGGTGGAGGTG
GTGAAGGAGGCGGAGCTGGTGGTGCTGGCGGGTATGGAGGAGCGGTGGACATGGAGGTGGTGGTG
GTAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGCGGTGGA
GGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGTGGACATGGAGGTGG
TGGTGGTAG
Found at i:56871 original size:69 final size:69
Alignment explanation
Indices: 56528--56888 Score: 249
Period size: 69 Copynumber: 5.3 Consensus size: 69
56518 GGTGAAGCTA
* *
56528 GTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGTGGTGGAGGTGGTGAAGGAGGCGGAGCT
1 GTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGAGGTGGAGGTGGTGAAGGAGGTGGAGCT
56593 GGTG
66 GGTG
* * * * *** * * * *
56597 GTGCTGGCGGGTA---TGGAGGAGCGGGTGGA-ATTGGAGGTGGTGGTGGT-AGTGGTGGTGGCG
1 GTGCAGGTGGATATGGTGGTGGAGCTTCTGGATA-TGGAGGTGGAGGTGGTGA-AGGAGGTGGAG
** * *
56657 GAGCTA
64 CTGGTG
* * * *
56663 GTGCCGGTGGATATGGTGGTGGAGCTTCTGGATATGGCGGTGGAAGTGGCGAAGGAGGTGGAGCT
1 GTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGAGGTGGAGGTGGTGAAGGAGGTGGAGCT
56728 GGTG
66 GGTG
* * * * *** * * * * *
56732 GTGCCGGCGGGTA---TGGAGGAGCCGGTGGACATGGAGGTGGTGGTGGT--A-GTGGTGGCGGT
1 GTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGAGGTGGAGGTGGTGAAGGAGGTGGAGCT
*
56791 GGAGCTA
66 -G-G-TG
* *
56798 GTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGCGGTGGGGGTGGTGAAGGAGGTGGAGCT
1 GTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGAGGTGGAGGTGGTGAAGGAGGTGGAGCT
56863 GGTG
66 GGTG
* * *
56867 GTGCAAGTGGACATGGAGGTGG
1 GTGCAGGTGGATATGGTGGTGG
56889 TGGTGGTAGT
Statistics
Matches: 209, Mismatches: 67, Indels: 32
0.68 0.22 0.10
Matches are distributed among these distances:
63 8 0.04
64 2 0.01
65 3 0.01
66 81 0.39
69 102 0.49
70 3 0.01
71 2 0.01
72 8 0.04
ACGTcount: A:0.15, C:0.09, G:0.53, T:0.23
Consensus pattern (69 bp):
GTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGAGGTGGAGGTGGTGAAGGAGGTGGAGCT
GGTG
Found at i:56928 original size:252 final size:256
Alignment explanation
Indices: 56628--57343 Score: 1062
Period size: 252 Copynumber: 2.8 Consensus size: 256
56618 CGGGTGGAAT
* *
56628 TGGAGGTGGTGGTGGTAGTGGTGGTGGCGGAGCTAGTGCCGGTGGATATGGTGGTGGAGCTTCTG
1 TGGAGGTGGTGGTGGTAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTG
* *
56693 GATATGGCGGTGGAAGTGGCGAAGGAGGTGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGT
66 GATATGGCGGTGGAGGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGT
*
56758 GGACATGGAGGTGGTGGTGGTAGTGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGGTGGAGC
131 GGACATGGAGGTGGTGGTGGTAGTGGTGGCGGAGGAGCTAGTGCAGGTGGATATGGTGGTGGAGC
* * *
56823 TTCTGGATATGGCGGTGGGGGTGGTGAAGGAGGTGGAGCTGGTGGTG-C-A-A-GTGGACA
196 TTCTGGATATGGCGGTGGAGGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGAGACGTGGACA
*
56880 TGGAGGTGGTGGTGGTAGTGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTG
1 TGGAGGTGGTGGTGGTAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTG
* *
56945 GATATGGCGGTGGAGGTGGCGAAGGAGGCGGAGTTGGTGGTGCCGGTGGGTATGGAGGAGCCGGT
66 GATATGGCGGTGGAGGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGT
* * *
57010 GGACATGGAGGTGGTGGTGGTAGTGGTGGCGGCGGAGCTAATGCAGGTGGATATGGTGGTAGAGC
131 GGACATGGAGGTGGTGGTGGTAGTGGTGGCGGAGGAGCTAGTGCAGGTGGATATGGTGGTGGAGC
*
57075 TTCTGGATATGGTGGTGGAGGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGTGGGTATGGAGGAG
196 TTCTGGATATGGCGGTGGAGGTGGCGAAGGAGGCGGAGCTGGTGGTGCC----------GA-GA-
57140 CCGGTGGACA
249 -C-GTGGACA
* *
57150 TGGAGGTGGTGGTGGTAGTGGTGGCGGCGGAGCTAGTGCTGGTGGATATGGTGGTGGAGCTTCAG
1 TGGAGGTGGTGGTGGTAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTG
* * *
57215 GATATGGTGGTGGAGGTGGTGAAGGAGGCGGAGCTGGTGGTGCTGGCGGGTATGGAGGAGCCGGT
66 GATATGGCGGTGGAGGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGT
* * * *
57280 GGACATGGAGGTGGTGGTGGAAGTGGTGGTGGAGGAGCAAGTGCAGGAGGATATGGTGGTGGAG
131 GGACATGGAGGTGGTGGTGGTAGTGGTGGCGGAGGAGCTAGTGCAGGTGGATATGGTGGTGGAG
57344 GGGCACATGC
Statistics
Matches: 417, Mismatches: 29, Indels: 18
0.90 0.06 0.04
Matches are distributed among these distances:
252 228 0.55
253 1 0.00
264 1 0.00
266 1 0.00
270 186 0.45
ACGTcount: A:0.16, C:0.09, G:0.53, T:0.22
Consensus pattern (256 bp):
TGGAGGTGGTGGTGGTAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTG
GATATGGCGGTGGAGGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGT
GGACATGGAGGTGGTGGTGGTAGTGGTGGCGGAGGAGCTAGTGCAGGTGGATATGGTGGTGGAGC
TTCTGGATATGGCGGTGGAGGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGAGACGTGGACA
Found at i:56983 original size:135 final size:135
Alignment explanation
Indices: 56873--57343 Score: 807
Period size: 135 Copynumber: 3.5 Consensus size: 135
56863 GGTGGTGCAA
*
56873 GTGGACATGGAGGTGGTGGTGGTAGTGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGGTGGA
1 GTGGACATGGAGGTGGTGGTGGTAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGGTGGTGGA
* *
56938 GCTTCTGGATATGGCGGTGGAGGTGGCGAAGGAGGCGGAGTTGGTGGTGCCGGTGGGTATGGAGG
66 GCTTCTGGATATGGTGGTGGAGGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGTGGGTATGGAGG
57003 AGCCG
131 AGCCG
* *
57008 GTGGACATGGAGGTGGTGGTGGTAGTGGTGGCGGCGGAGCTAATGCAGGTGGATATGGTGGTAGA
1 GTGGACATGGAGGTGGTGGTGGTAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGGTGGTGGA
57073 GCTTCTGGATATGGTGGTGGAGGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGTGGGTATGGAGG
66 GCTTCTGGATATGGTGGTGGAGGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGTGGGTATGGAGG
57138 AGCCG
131 AGCCG
*
57143 GTGGACATGGAGGTGGTGGTGGTAGTGGTGGCGGCGGAGCTAGTGCTGGTGGATATGGTGGTGGA
1 GTGGACATGGAGGTGGTGGTGGTAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGGTGGTGGA
* * * *
57208 GCTTCAGGATATGGTGGTGGAGGTGGTGAAGGAGGCGGAGCTGGTGGTGCTGGCGGGTATGGAGG
66 GCTTCTGGATATGGTGGTGGAGGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGTGGGTATGGAGG
57273 AGCCG
131 AGCCG
* * * * *
57278 GTGGACATGGAGGTGGTGGTGGAAGTGGTGGTGGAGGAGCAAGTGCAGGAGGATATGGTGGTGGA
1 GTGGACATGGAGGTGGTGGTGGTAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGGTGGTGGA
57343 G
66 G
57344 GGGCACATGC
Statistics
Matches: 318, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
135 318 1.00
ACGTcount: A:0.16, C:0.09, G:0.53, T:0.22
Consensus pattern (135 bp):
GTGGACATGGAGGTGGTGGTGGTAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGGTGGTGGA
GCTTCTGGATATGGTGGTGGAGGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGTGGGTATGGAGG
AGCCG
Found at i:57000 original size:117 final size:117
Alignment explanation
Indices: 56752--57002 Score: 430
Period size: 117 Copynumber: 2.1 Consensus size: 117
56742 GTATGGAGGA
56752 GCCGGTGGACATGGAGGTGGTGGTGGTAGTGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGG
1 GCCGGTGGACATGGAGGTGGTGGTGGTAGTGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGG
* * *
56817 TGGAGCTTCTGGATATGGCGGTGGGGGTGGTGAAGGAGGTGGAGCTGGTGGT
66 TGGAGCTTCTGGATATGGCGGTGGAGGTGGCGAAGGAGGCGGAGCTGGTGGT
**
56869 GCAAGTGGACATGGAGGTGGTGGTGGTAGTGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGG
1 GCCGGTGGACATGGAGGTGGTGGTGGTAGTGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGG
*
56934 TGGAGCTTCTGGATATGGCGGTGGAGGTGGCGAAGGAGGCGGAGTTGGTGGT
66 TGGAGCTTCTGGATATGGCGGTGGAGGTGGCGAAGGAGGCGGAGCTGGTGGT
**
56986 GCCGGTGGGTATGGAGG
1 GCCGGTGGACATGGAGG
57003 AGCCGGTGGA
Statistics
Matches: 124, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
117 124 1.00
ACGTcount: A:0.15, C:0.09, G:0.53, T:0.23
Consensus pattern (117 bp):
GCCGGTGGACATGGAGGTGGTGGTGGTAGTGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGG
TGGAGCTTCTGGATATGGCGGTGGAGGTGGCGAAGGAGGCGGAGCTGGTGGT
Found at i:57011 original size:117 final size:117
Alignment explanation
Indices: 56773--57146 Score: 401
Period size: 117 Copynumber: 3.0 Consensus size: 117
56763 TGGAGGTGGT
56773 GGTGGTAGTGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGCGG
1 GGTGGTAGTGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGCGG
* * * ** ** * **
56838 TGGGGGTGGTGAAGGAGGTGGAGCTGGTGGTGCAAGTGGACATGGAGGTGGT
66 TGGAGGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGTGGGTATGGAGGAGCC
56890 GGTGGTAGTGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGCGG
1 GGTGGTAGTGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGCGG
*
56955 TGGAGGTGGCGAAGGAGGCGGAGTTGGTGGTGCCGGTGGGTATGGAGGAGCC
66 TGGAGGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGTGGGTATGGAGGAGCC
* * * * *
57007 GGTGGACATGGAGGTGGTGGTGGTAG-TGGTGGC-GGCGGAGCTAATGCAGGTGGATATGGTGGT
1 GGTGG---TAGTGGTGGCGGTGG-AGCTAGT-GCAGG-TG-G---AT--A--TGG---TGGT-G-
*
57070 AGAGCTTCTGGATATGGTGGTGGAGGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGTGGGTATGG
47 -GAGCTTCTGGATATGGCGGTGGAGGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGTGGGTATGG
57135 AGGAGCC
111 AGGAGCC
57142 GGTGG
1 GGTGG
57147 ACATGGAGGT
Statistics
Matches: 219, Mismatches: 18, Indels: 22
0.85 0.07 0.08
Matches are distributed among these distances:
117 111 0.51
120 17 0.08
121 5 0.02
122 1 0.00
125 2 0.01
127 1 0.00
129 3 0.01
132 4 0.02
133 1 0.00
135 74 0.34
ACGTcount: A:0.15, C:0.09, G:0.53, T:0.22
Consensus pattern (117 bp):
GGTGGTAGTGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGCGG
TGGAGGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGTGGGTATGGAGGAGCC
Found at i:57017 original size:18 final size:18
Alignment explanation
Indices: 56986--57020 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
56976 AGTTGGTGGT
**
56986 GCCGGTGGGTATGGAGGA
1 GCCGGTGGACATGGAGGA
57004 GCCGGTGGACATGGAGG
1 GCCGGTGGACATGGAGG
57021 TGGTGGTGGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.14, G:0.54, T:0.14
Consensus pattern (18 bp):
GCCGGTGGACATGGAGGA
Found at i:57152 original size:18 final size:18
Alignment explanation
Indices: 57121--57155 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
57111 AGCTGGTGGT
**
57121 GCCGGTGGGTATGGAGGA
1 GCCGGTGGACATGGAGGA
57139 GCCGGTGGACATGGAGG
1 GCCGGTGGACATGGAGG
57156 TGGTGGTGGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.14, G:0.54, T:0.14
Consensus pattern (18 bp):
GCCGGTGGACATGGAGGA
Found at i:57227 original size:69 final size:69
Alignment explanation
Indices: 56874--57343 Score: 280
Period size: 69 Copynumber: 6.9 Consensus size: 69
56864 GTGGTGCAAG
* * *
56874 TGGACATGGAGGTGGTGGTGGTAGTGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGGTGGAG
1 TGGATATGGAGGTGGAGGTGGTAGTGGTGGCGGAGGAGCTAGTGCAGGTGGATATGGTGGTGGAG
56939 CTTC
66 CTTC
* * * * ** * * * * *
56943 TGGATATGGCGGTGGAGGTGG-CGAAGGAGGCGGAGTTGGTGGTGCCGGTGGGTA---TGGAGGA
1 TGGATATGGAGGTGGAGGTGGTAG-TGGTGGCGGAGGAGCTAGTGCAGGTGGATATGGTGGTGGA
***
57004 GCCGG
65 GCTTC
* * * * *
57009 TGGACATGGAGGTGGTGGTGGTAGTGGTGGCGGCGGAGCTAATGCAGGTGGATATGGTGGTAGAG
1 TGGATATGGAGGTGGAGGTGGTAGTGGTGGCGGAGGAGCTAGTGCAGGTGGATATGGTGGTGGAG
57074 CTTC
66 CTTC
* * * * ** * * * * *
57078 TGGATATGGTGGTGGAGGTGG-CGAAGGAGGCGGAGCTGGTGGTGCCGGTGGGTA---TGGAGGA
1 TGGATATGGAGGTGGAGGTGGTAG-TGGTGGCGGAGGAGCTAGTGCAGGTGGATATGGTGGTGGA
***
57139 GCCGG
65 GCTTC
* * * *
57144 TGGACATGGAGGTGGTGGTGGTAGTGGTGGCGGCGGAGCTAGTGCTGGTGGATATGGTGGTGGAG
1 TGGATATGGAGGTGGAGGTGGTAGTGGTGGCGGAGGAGCTAGTGCAGGTGGATATGGTGGTGGAG
57209 CTTC
66 CTTC
* * * * ** * * * * * *
57213 AGGATATGGTGGTGGAGGTGGT-GAAGGAGGCGGAGCTGGTGGTGCTGGCGGGTA---TGGAGGA
1 TGGATATGGAGGTGGAGGTGGTAG-TGGTGGCGGAGGAGCTAGTGCAGGTGGATATGGTGGTGGA
***
57274 GCCGG
65 GCTTC
* * * * * *
57279 TGGACATGGAGGTGGTGGTGGAAGTGGTGGTGGAGGAGCAAGTGCAGGAGGATATGGTGGTGGAG
1 TGGATATGGAGGTGGAGGTGGTAGTGGTGGCGGAGGAGCTAGTGCAGGTGGATATGGTGGTGGAG
57344 GGGCACATGC
Statistics
Matches: 280, Mismatches: 106, Indels: 30
0.67 0.25 0.07
Matches are distributed among these distances:
66 136 0.49
67 3 0.01
68 3 0.01
69 138 0.49
ACGTcount: A:0.16, C:0.09, G:0.53, T:0.22
Consensus pattern (69 bp):
TGGATATGGAGGTGGAGGTGGTAGTGGTGGCGGAGGAGCTAGTGCAGGTGGATATGGTGGTGGAG
CTTC
Found at i:57235 original size:387 final size:387
Alignment explanation
Indices: 56511--57257 Score: 1280
Period size: 387 Copynumber: 1.9 Consensus size: 387
56501 GAGGTGGCAA
* *
56511 TGGTGGTGGTGAAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGTGGTGGAGGTG
1 TGGTGGCGGTGAAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGCGGTGGAGGTG
* * *
56576 GTGAAGGAGGCGGAGCTGGTGGTGCTGGCGGGTATGGAGGAGCGGGTGGAATTGGAGGTGGTGGT
66 GCGAAGGAGGCGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGTGGAATTGGAGGTGGTGGT
* * * *
56641 GGTAGTGGTGGTGGCGGAGCTAGTGCCGGTGGATATGGTGGTGGAGCTTCTGGATATGGCGGTGG
131 GGTAGTGGTGGCGGCGGAGCTAATGCAGGTGGATATGGTGGTAGAGCTTCTGGATATGGCGGTGG
*
56706 AAGTGGCGAAGGAGGTGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGTGGACATGGAGGTG
196 AAGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGTGGACATGGAGGTG
* *
56771 GTGGTGGTAGTGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGC
261 GTGGTGGTAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCAGGATATGGC
* *
56836 GGTGGGGGTGGTGAAGGAGGTGGAGCTGGTGGTGCAAGTGGACATGGAGGTGGTGGTGGTAG
326 GGTGGAGGTGGTGAAGGAGGCGGAGCTGGTGGTGCAAGTGGACATGGAGGTGGTGGTGGTAG
*
56898 TGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGCGGTGGAGGTG
1 TGGTGGCGGTGAAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGCGGTGGAGGTG
* *
56963 GCGAAGGAGGCGGAGTTGGTGGTGCCGGTGGGTATGGAGGAGCCGGTGGACA-TGGAGGTGGTGG
66 GCGAAGGAGGCGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGTGGA-ATTGGAGGTGGTGG
*
57027 TGGTAGTGGTGGCGGCGGAGCTAATGCAGGTGGATATGGTGGTAGAGCTTCTGGATATGGTGGTG
130 TGGTAGTGGTGGCGGCGGAGCTAATGCAGGTGGATATGGTGGTAGAGCTTCTGGATATGGCGGTG
* *
57092 GAGGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGTGGGTATGGAGGAGCCGGTGGACATGGAGGT
195 GAAGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGTGGACATGGAGGT
*
57157 GGTGGTGGTAGTGGTGGCGGCGGAGCTAGTGCTGGTGGATATGGTGGTGGAGCTTCAGGATATGG
260 GGTGGTGGTAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCAGGATATGG
*
57222 TGGTGGAGGTGGTGAAGGAGGCGGAGCTGGTGGTGC
325 CGGTGGAGGTGGTGAAGGAGGCGGAGCTGGTGGTGC
57258 TGGCGGGTAT
Statistics
Matches: 337, Mismatches: 22, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
387 336 1.00
388 1 0.00
ACGTcount: A:0.15, C:0.09, G:0.53, T:0.23
Consensus pattern (387 bp):
TGGTGGCGGTGAAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGATATGGCGGTGGAGGTG
GCGAAGGAGGCGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGTGGAATTGGAGGTGGTGGT
GGTAGTGGTGGCGGCGGAGCTAATGCAGGTGGATATGGTGGTAGAGCTTCTGGATATGGCGGTGG
AAGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGTGGACATGGAGGTG
GTGGTGGTAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCAGGATATGGC
GGTGGAGGTGGTGAAGGAGGCGGAGCTGGTGGTGCAAGTGGACATGGAGGTGGTGGTGGTAG
Found at i:57300 original size:12 final size:12
Alignment explanation
Indices: 57285--57314 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
57275 CCGGTGGACA
57285 TGGAGGTGGTGG
1 TGGAGGTGGTGG
*
57297 TGGAAGTGGTGG
1 TGGAGGTGGTGG
57309 TGGAGG
1 TGGAGG
57315 AGCAAGTGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.13, C:0.00, G:0.63, T:0.23
Consensus pattern (12 bp):
TGGAGGTGGTGG
Found at i:57335 original size:66 final size:66
Alignment explanation
Indices: 56873--57335 Score: 247
Period size: 66 Copynumber: 6.9 Consensus size: 66
56863 GGTGGTGCAA
* * *
56873 GTGGACATGGAGGTGGTGGTGGTAGTGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGGTGGA
1 GTGGACATGGAGGTGGTGGTGGAAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATA---TGGAGGA
**
56938 GCTT
63 GCCG
* * * * * * ** * * * *
56942 CTGGATATGGCGGTGGAGGTGGCGAA--GGAGGCGGAGTTGGTGGTGCCGGTGGGTATGGAGGAG
1 GTGGACATGGAGGTGGTGGT-G-GAAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGGAGGAG
57005 CCG
64 CCG
* * *
57008 GTGGACATGGAGGTGGTGGTGGTAGTGGTGGCGGCGGAGCTAATGCAGGTGGATATGGTGGTAGA
1 GTGGACATGGAGGTGGTGGTGGAAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGG-AG--GA
**
57073 GCTT
63 GCCG
* * * * * * ** * * * *
57077 CTGGATATGGTGGTGGAGGTGGCGAA--GGAGGCGGAGCTGGTGGTGCCGGTGGGTATGGAGGAG
1 GTGGACATGGAGGTGGTGGT-G-GAAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGGAGGAG
57140 CCG
64 CCG
* * * * **
57143 GTGGACATGGAGGTGGTGGTGGTAGTGGTGGCGGCGGAGCTAGTGCTGGTGGATATGGTGGTGGA
1 GTGGACATGGAGGTGGTGGTGGAAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGGAGGAGCC
57208 G
66 G
* * ** * * * * * *
57209 CT--TCA-GGATATGGTGGTGGAGGTGGTGAAGGAGGCGGAGCTGGTGGTGCTGGCGGGTATGGA
1 GTGGACATGGAGGTGGTGGTGGAAGTGGT---GGCGGCGGAGC---TAGTGCAGGTGGATATGGA
57271 GGAGCCG
60 GGAGCCG
* * * *
57278 GTGGACATGGAGGTGGTGGTGGAAGTGGTGGTGGAGGAGCAAGTGCAGGAGGATATGG
1 GTGGACATGGAGGTGGTGGTGGAAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGG
57336 TGGTGGAGGG
Statistics
Matches: 281, Mismatches: 93, Indels: 43
0.67 0.22 0.10
Matches are distributed among these distances:
63 17 0.06
64 6 0.02
65 2 0.01
66 119 0.42
67 1 0.00
68 1 0.00
69 109 0.39
70 2 0.01
71 6 0.02
72 18 0.06
ACGTcount: A:0.16, C:0.09, G:0.53, T:0.22
Consensus pattern (66 bp):
GTGGACATGGAGGTGGTGGTGGAAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGGAGGAGCC
G
Found at i:57337 original size:30 final size:30
Alignment explanation
Indices: 57303--57365 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
57293 GTGGTGGAAG
57303 TGGTGGTGGAGGAGCA-AGTGCAGGAGGATA
1 TGGTGGTGGAGGAGCACA-TGCAGGAGGATA
* *
57333 TGGTGGTGGAGGGGCACATGCAGGTGGATA
1 TGGTGGTGGAGGAGCACATGCAGGAGGATA
57363 TGG
1 TGG
57366 CAATGGAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.22, C:0.08, G:0.51, T:0.19
Consensus pattern (30 bp):
TGGTGGTGGAGGAGCACATGCAGGAGGATA
Found at i:57424 original size:24 final size:24
Alignment explanation
Indices: 57393--57449 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
57383 GAGGAGGTTT
57393 TGGTGGTGCAGGCGG-TCATGGTGG
1 TGGTGGTGCAGGCGGTTC-TGGTGG
* *
57417 TGGTGGTGGAGGTGGTTCTGGTGG
1 TGGTGGTGCAGGCGGTTCTGGTGG
*
57441 TGGAGGTGC
1 TGGTGGTGC
57450 CGGTGTATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 26 0.93
25 2 0.07
ACGTcount: A:0.07, C:0.09, G:0.56, T:0.28
Consensus pattern (24 bp):
TGGTGGTGCAGGCGGTTCTGGTGG
Found at i:57443 original size:270 final size:267
Alignment explanation
Indices: 56566--57386 Score: 890
Period size: 252 Copynumber: 3.1 Consensus size: 267
56556 TGGATATGGT
* * ** * * * * *
56566 GGTGGAGGTGGTGAAGGAGGCGGAGCTGGTGGTGCTGGCGGGTATGGAGGAGCGGGTGGA-ATTG
1 GGTGGAGATGGCGAAGGAGAAGGAGCTGGAGGTGCCGGTGGGCATGGAGGAGCCGGTGGACA-TG
* * * * *
56630 GAGGTGGTGGTGGTAGTGGTGGTGGCGGAGCTAGTGCCGGTGGATATGGTGGTGGAGCTTCTGGA
65 GAGGAGGTGGTGCTAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCAGGA
* *
56695 TATGGCGGTGGAAGTGGCGAAGGAGGTGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGTGG
130 TATGGCGGTGGAGGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGTGG
* * * * *
56760 ACATGGAGGTGGTGGTGGTAGTGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGGT---G-GA
195 ACATGGAGGTGGTGGTGGAAGTGGTGGCGGAGGAGCTAATGCAGGAGGATATGGTGGTAGAGCGG
*
56821 G-C-TTC-
260 GACATGCA
* ** * * * * * * **
56826 --TGGATATGGCGGTGG-G--GGTGGT-GAAG-G-AGGTGGAGC-TGGTGGTGCAAGTGGACATG
1 GGTGGAGATGGCGAAGGAGAAGGAGCTGGAGGTGCCGGTGG-GCATGGAGGAGCCGGTGGACATG
* * * *
56882 GAGGTGGTGGTGGTAGTGGTGGCGGTGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCTGGA
65 GAGGAGGTGGTGCTAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCAGGA
* *
56947 TATGGCGGTGGAGGTGGCGAAGGAGGCGGAGTTGGTGGTGCCGGTGGGTATGGAGGAGCCGGTGG
130 TATGGCGGTGGAGGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGTGG
* * *
57012 ACATGGAGGTGGTGGTGGTAGTGGTGGCGGCGGAGCTAATGCAGGTGGATATGGTGGTAGAGCTT
195 ACATGGAGGTGGTGGTGGAAGTGGTGGCGGAGGAGCTAATGCAGGAGGATATGGTGGTAGAG---
* * **
57077 CTGGATATGGT
257 CGGGACATGCA
* ** * *
57088 GGTGGAGGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGTGGGTATGGAGGAGCCGGTGGACATGG
1 GGTGGAGATGGCGAAGGAGAAGGAGCTGGAGGTGCCGGTGGGCATGGAGGAGCCGGTGGACATGG
* * *
57153 AGGTGGTGGTGGTAGTGGTGGCGGCGGAGCTAGTGCTGGTGGATATGGTGGTGGAGCTTCAGGAT
66 AGGAGGTGGTGCTAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCAGGAT
* * *
57218 ATGGTGGTGGAGGTGGTGAAGGAGGCGGAGCTGGTGGTGCTGGCGGGTATGGAGGAGCCGGTGGA
131 ATGGCGGTGGAGGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGTGGA
* *
57283 CATGGAGGTGGTGGTGGAAGTGGTGGTGGAGGAGC-AAGTGCAGGAGGATATGGTGGTGGAG-GG
196 CATGGAGGTGGTGGTGGAAGTGGTGGCGGAGGAGCTAA-TGCAGGAGGATATGGTGGTAGAGCGG
57346 GCACATGCA
260 G-ACATGCA
*
57355 GGTGGATATGGC-AATGGAGAAGGAGCTGGAGG
1 GGTGGAGATGGCGAA-GGAGAAGGAGCTGGAGG
57387 AGGTTTTGGT
Statistics
Matches: 471, Mismatches: 66, Indels: 41
0.81 0.11 0.07
Matches are distributed among these distances:
252 197 0.42
253 3 0.01
254 2 0.00
255 5 0.01
257 1 0.00
258 10 0.02
259 1 0.00
261 1 0.00
264 11 0.02
265 1 0.00
266 4 0.01
267 32 0.07
268 2 0.00
269 4 0.01
270 197 0.42
ACGTcount: A:0.16, C:0.09, G:0.53, T:0.21
Consensus pattern (267 bp):
GGTGGAGATGGCGAAGGAGAAGGAGCTGGAGGTGCCGGTGGGCATGGAGGAGCCGGTGGACATGG
AGGAGGTGGTGCTAGTGGTGGCGGCGGAGCTAGTGCAGGTGGATATGGTGGTGGAGCTTCAGGAT
ATGGCGGTGGAGGTGGCGAAGGAGGCGGAGCTGGTGGTGCCGGCGGGTATGGAGGAGCCGGTGGA
CATGGAGGTGGTGGTGGAAGTGGTGGCGGAGGAGCTAATGCAGGAGGATATGGTGGTAGAGCGGG
ACATGCA
Found at i:64291 original size:25 final size:25
Alignment explanation
Indices: 64262--64312 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
64252 AAAACTTAAT
64262 AATAGTGAGTTAATGACAATCAAAC
1 AATAGTGAGTTAATGACAATCAAAC
64287 AATAGTGAGTTAATGACAATCAAAC
1 AATAGTGAGTTAATGACAATCAAAC
64312 A
1 A
64313 TTCGTTAGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.49, C:0.12, G:0.16, T:0.24
Consensus pattern (25 bp):
AATAGTGAGTTAATGACAATCAAAC
Found at i:67388 original size:145 final size:145
Alignment explanation
Indices: 67202--67515 Score: 502
Period size: 145 Copynumber: 2.2 Consensus size: 145
67192 CCCGAAAGGA
* * *
67202 TACACATACACATACACATATACATATAGGATTCACATGGCTGCAAATCATACCATCAACAATAG
1 TACATATACACATACAC--ATACATATAGGATTCACATGGCTGCAAATCATACCACCAACAATAA
* **
67267 CACATTTAGGAAAAGAATCATCTATCCCTCATATCCTTCATGTCCATGACATGGTTAGAATTATG
64 CACATTTACGAAAAGAATCATCTATCCCTCATATCCTTCATGTCCATGACATAATTAGAATTATG
67332 TTGCATTGCAATATACG
129 TTGCATTGCAATATACG
* *
67349 TACATATATACATACACATACATATAGGATTCACTTGGCTGCAAATCATACCACCAACAATAACA
1 TACATATACACATACACATACATATAGGATTCACATGGCTGCAAATCATACCACCAACAATAACA
*
67414 CATTTACGAAAAGAATCATCTATCCCTCATATCCTTCATGTCCATGACATAATTAGACTTATGTT
66 CATTTACGAAAAGAATCATCTATCCCTCATATCCTTCATGTCCATGACATAATTAGAATTATGTT
67479 GCATTGCAATATACG
131 GCATTGCAATATACG
* * *
67494 TACTTGTACACATAGACATACA
1 TACATATACACATACACATACA
67516 CATACACATA
Statistics
Matches: 154, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
145 139 0.90
147 15 0.10
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (145 bp):
TACATATACACATACACATACATATAGGATTCACATGGCTGCAAATCATACCACCAACAATAACA
CATTTACGAAAAGAATCATCTATCCCTCATATCCTTCATGTCCATGACATAATTAGAATTATGTT
GCATTGCAATATACG
Found at i:67555 original size:6 final size:6
Alignment explanation
Indices: 67500--67539 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
67490 TACGTACTTG
*
67500 TACACA TAGACA TACACA TACACA TACACA TACACA TACA
1 TACACA TACACA TACACA TACACA TACACA TACACA TACA
67540 TATATATACA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.50, C:0.30, G:0.03, T:0.17
Consensus pattern (6 bp):
TACACA
Found at i:70098 original size:6 final size:6
Alignment explanation
Indices: 70087--70478 Score: 596
Period size: 6 Copynumber: 64.3 Consensus size: 6
70077 AAGTTATATA
70087 GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT
1 GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT
70135 GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT
1 GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT
70183 GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT
1 GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT
70231 GTGTAT GTGTAT GTGTAT GTGTA- -TGTAT GTGTAT GTGTAT GTGTAT
1 GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT
70277 GTTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT
1 G-TGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT
70326 GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAACT
1 GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGT-A-T
* * * * * *
70376 ACTGGCCTTAA GTTATAT AATGGA- GAGGTAT GTGTAT GTG--T GTGTAT
1 -GT-G---TAT G-TGTAT -GTGTAT G-TGTAT GTGTAT GTGTAT GTGTAT
70423 GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT
1 GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT GTGTAT
70471 GTGTAT GT
1 GTGTAT GT
70479 ATCCTCTTAT
Statistics
Matches: 358, Mismatches: 12, Indels: 32
0.89 0.03 0.08
Matches are distributed among these distances:
4 8 0.02
6 332 0.93
7 12 0.03
8 1 0.00
9 1 0.00
10 1 0.00
11 1 0.00
12 1 0.00
13 1 0.00
ACGTcount: A:0.18, C:0.01, G:0.33, T:0.48
Consensus pattern (6 bp):
GTGTAT
Found at i:70109 original size:68 final size:67
Alignment explanation
Indices: 69971--70116 Score: 181
Period size: 68 Copynumber: 2.2 Consensus size: 67
69961 TGTATATGTA
*
69971 TGTATGTGTATTTTCTCATTTGTATAACTACTAGCTGTAAGTTATATAATGGAGATGTATGTCTA
1 TGTATGTGTATTCTCTCATTTGTATAACTACTAGCTGTAAGTTATATAATGGAGATGTATGTCTA
70036 TG
66 TG
* * * *
70038 TGTATGTGTATTCTCTTATTTGTGTAACTACT-GTTCCT-TAAGTTATATAGTGTATG-TGTATG
1 TGTATGTGTATTCTCTCATTTGTATAACTACTAG---CTGTAAGTTATATAATGGA-GATGTATG
*
70100 TGTATG
62 TCTATG
70106 TGTATGTGTAT
1 TGTATGTGTAT
70117 GTGTATGTGT
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
66 1 0.01
67 29 0.42
68 36 0.52
69 3 0.04
ACGTcount: A:0.23, C:0.08, G:0.21, T:0.48
Consensus pattern (67 bp):
TGTATGTGTATTCTCTCATTTGTATAACTACTAGCTGTAAGTTATATAATGGAGATGTATGTCTA
TG
Found at i:70550 original size:63 final size:65
Alignment explanation
Indices: 70460--70596 Score: 215
Period size: 63 Copynumber: 2.1 Consensus size: 65
70450 TATGTGTATG
* *
70460 TGTATGTGTATGTGTATGTATCCTCTTATTTGTGTAACTACTGGCCC-TAAGTTATATAATGGAG
1 TGTATGTGTATATG-ATGTATCCTCTTATTTGTGTAACTACTGGCCCTTAAGTTATATAATGAAG
70524 A
65 A
*
70525 TGTATGTGTATATG-TGTATTCTCTTATTTGTGTAACTACTGGCCCTTAAGTTATATAATGAAGA
1 TGTATGTGTATATGATGTATCCTCTTATTTGTGTAACTACTGGCCCTTAAGTTATATAATGAAGA
*
70589 TGTTTGTG
1 TGTATGTG
70597 GTAAGGGAAA
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
63 30 0.45
64 24 0.36
65 13 0.19
ACGTcount: A:0.24, C:0.11, G:0.21, T:0.44
Consensus pattern (65 bp):
TGTATGTGTATATGATGTATCCTCTTATTTGTGTAACTACTGGCCCTTAAGTTATATAATGAAGA
Found at i:77211 original size:31 final size:31
Alignment explanation
Indices: 77175--77240 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
77165 AACAGCCTGG
* * ** *
77175 TGACTTAAATGAAAATTTTTGAATAGTTCAA
1 TGACTTAAATAAAAACTTTCAAATAATTCAA
77206 TGACTTAAATAAAAACTTTCAAATAATTCAA
1 TGACTTAAATAAAAACTTTCAAATAATTCAA
77237 TGAC
1 TGAC
77241 CATATTGTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.45, C:0.11, G:0.09, T:0.35
Consensus pattern (31 bp):
TGACTTAAATAAAAACTTTCAAATAATTCAA
Found at i:77914 original size:144 final size:143
Alignment explanation
Indices: 77661--77929 Score: 398
Period size: 144 Copynumber: 1.9 Consensus size: 143
77651 AACATATTCG
* *
77661 TTTTATAAATCAATAAATATTATTTTGAGGGTATTTATACCTTTCTATATTTTGATAAATCGAGA
1 TTTTATAAATCAATAAATATTATTTTGAGGATATTTATACCTTTCTATATTTTAATAAATC-AGA
*
77726 AAAAAAACATATGAATTTGAATCGAAAACCTTAAAGTTTACTCTCTCAATTTTATTATTTCAATA
65 AAAAAAACATATGAATTTGAATCAAAAACCTTAAAGTTTACTCTCTCAATTTTATTATTTCAATA
77791 AAAATTACGTTTCA
130 AAAATTACGTTTCA
** * *
77805 TTTTATAAATCAATAAATATTATTTTGAGGATATTTATGTCTTTTTATATTTTAATAAATC-TAA
1 TTTTATAAATCAATAAATATTATTTTGAGGATATTTATACCTTTCTATATTTTAATAAATCAGAA
* * *
77869 AAAAAACATATGGATTT-ATATCTAAGAAACCTTATATTTTACTCTCTCAATTTTATTATTT
66 AAAAAACATATGAATTTGA-ATC-AA-AAACCTTAAAGTTTACTCTCTCAATTTTATTATTT
77930 GAGCAAAAGC
Statistics
Matches: 112, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
141 1 0.01
142 21 0.19
143 1 0.01
144 89 0.79
ACGTcount: A:0.39, C:0.10, G:0.07, T:0.44
Consensus pattern (143 bp):
TTTTATAAATCAATAAATATTATTTTGAGGATATTTATACCTTTCTATATTTTAATAAATCAGAA
AAAAAACATATGAATTTGAATCAAAAACCTTAAAGTTTACTCTCTCAATTTTATTATTTCAATAA
AAATTACGTTTCA
Found at i:80184 original size:91 final size:91
Alignment explanation
Indices: 80048--80321 Score: 313
Period size: 91 Copynumber: 3.0 Consensus size: 91
80038 TGATCCGTAG
* ** *
80048 CTACCTAAAATCAATAGGATAAACAAGCTGGTTATTTATAAGGTTGAGTAAGAAAAATTGAGAAA
1 CTACCTAAAATCAATAGGATCAACAAATTGGTCA-TTATAAGGTTGAGTAAGAAAAATTGAGAAA
**
80113 TTGAAAATCAATTC-AAATTAAGTGTT
65 TTGAAAATCAATTCAAAACCAAGTGTT
** *
80139 CTGTCTAAAATCAATAGGATCAACAAATTGGTCATTCATAGGGTTGAGT-AGAAAAAATTGAGAA
1 CTACCTAAAATCAATAGGATCAACAAATTGGTCATT-ATAAGGTTGAGTAAG-AAAAATTGAGAA
80203 ATTGAAAATCAATTCAAAACCAAGTGTT
64 ATTGAAAATCAATTCAAAACCAAGTGTT
* * * * * * * *
80231 CTACCTAAACTCAATAGGACCAATAAATTGGTCGTTAGTAAGGTTGAGTAGGAGAAATCGAAAAA
1 CTACCTAAAATCAATAGGATCAACAAATTGGTCATTA-TAAGGTTGAGTAAGAAAAATTGAGAAA
*
80296 TTGAAAAT-GATCTC-AAACCAAGTGTT
65 TTGAAAATCAAT-TCAAAACCAAGTGTT
80322 TTGACATGGG
Statistics
Matches: 156, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
90 4 0.03
91 81 0.52
92 70 0.45
93 1 0.01
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.27
Consensus pattern (91 bp):
CTACCTAAAATCAATAGGATCAACAAATTGGTCATTATAAGGTTGAGTAAGAAAAATTGAGAAAT
TGAAAATCAATTCAAAACCAAGTGTT
Found at i:88829 original size:21 final size:21
Alignment explanation
Indices: 88790--88837 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 21
88780 CTTAATTTCT
88790 CAATTCAATCGATTTTTTAATC
1 CAATTCAATC-ATTTTTTAATC
88812 CAATTCAAT-ATCTTTTTAATC
1 CAATTCAATCAT-TTTTTAATC
88833 CAATT
1 CAATT
88838 AGTTTGATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 2 0.08
21 14 0.56
22 9 0.36
ACGTcount: A:0.33, C:0.19, G:0.02, T:0.46
Consensus pattern (21 bp):
CAATTCAATCATTTTTTAATC
Found at i:90452 original size:41 final size:41
Alignment explanation
Indices: 90395--90477 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
90385 TGCAACTTGC
*
90395 AATGCTTTTGTTAATTTATATATACATACACACACGGGTGA
1 AATGCTTTTGTCAATTTATATATACATACACACACGGGTGA
90436 AATGCTTTTGTCAATTTATATATACATACACACACGGGTGA
1 AATGCTTTTGTCAATTTATATATACATACACACACGGGTGA
90477 A
1 A
90478 GTTATTTTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (41 bp):
AATGCTTTTGTCAATTTATATATACATACACACACGGGTGA
Found at i:90511 original size:22 final size:24
Alignment explanation
Indices: 90486--90537 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 24
90476 AAGTTATTTT
*
90486 TTTTATAA-AAAAT-AAATTATAA
1 TTTTATAAGAAAATAAAAATATAA
*
90508 TTTT-TAAGATAATAAAAATATAA
1 TTTTATAAGAAAATAAAAATATAA
90531 TTTTATA
1 TTTTATA
90538 TTTTTATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 3 0.12
22 8 0.32
23 12 0.48
24 2 0.08
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (24 bp):
TTTTATAAGAAAATAAAAATATAA
Found at i:97840 original size:5 final size:5
Alignment explanation
Indices: 97830--97869 Score: 71
Period size: 5 Copynumber: 8.0 Consensus size: 5
97820 ATTGTTCAGA
*
97830 ATTAT ATTAT ATTAT ATTAT ATTAT AATAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
97870 CACATTATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
ATTAT
Found at i:99125 original size:22 final size:22
Alignment explanation
Indices: 99086--99130 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
99076 TATTTGTATT
*
99086 TAAATTTAATTATAAAAATATA
1 TAAATTTAATTATAAAAACATA
*
99108 TAAATATTAA-TATGAAAACATA
1 TAAAT-TTAATTATAAAAACATA
99130 T
1 T
99131 TTTATTATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (22 bp):
TAAATTTAATTATAAAAACATA
Found at i:99527 original size:31 final size:32
Alignment explanation
Indices: 99486--99545 Score: 79
Period size: 30 Copynumber: 1.9 Consensus size: 32
99476 AATTATGAAT
99486 TATTTCATATTCATTAATCAAATT-TCTTATCA
1 TATTTCATATT-ATTAATCAAATTATCTTATCA
* *
99518 TATTT-ATATTATTTATTAAATTATCTTA
1 TATTTCATATTATTAATCAAATTATCTTA
99546 CTTCTAACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 10 0.40
31 10 0.40
32 5 0.20
ACGTcount: A:0.35, C:0.10, G:0.00, T:0.55
Consensus pattern (32 bp):
TATTTCATATTATTAATCAAATTATCTTATCA
Found at i:102825 original size:22 final size:22
Alignment explanation
Indices: 102798--102840 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
102788 ATTCAACCGG
102798 TTTATAAAAATTTAAATATTTT
1 TTTATAAAAATTTAAATATTTT
* *
102820 TTTATAAAATTTTAATTATTT
1 TTTATAAAAATTTAAATATTT
102841 ATATATTTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
TTTATAAAAATTTAAATATTTT
Found at i:106443 original size:21 final size:21
Alignment explanation
Indices: 106417--106472 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
106407 AACAGCGGTG
*
106417 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
106438 GCGGTGAGATTAGATACTGTA
1 GCGGTGAGATTAGATACTGTA
*
106459 GCAGTGAGATTAGA
1 GCGGTGAGATTAGA
106473 AACAGCGGTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.29, C:0.09, G:0.34, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:109470 original size:6 final size:6
Alignment explanation
Indices: 109459--109507 Score: 80
Period size: 6 Copynumber: 8.2 Consensus size: 6
109449 TTTGCAACCC
* *
109459 AAGGGG AAGGGG AAAGGG AAGGGG AAGGGG AAGGGG AAGGGG AAAGGG
1 AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG
109507 A
1 A
109508 GAAGAAGGTA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.39, C:0.00, G:0.61, T:0.00
Consensus pattern (6 bp):
AAGGGG
Found at i:112696 original size:53 final size:53
Alignment explanation
Indices: 112615--112765 Score: 205
Period size: 53 Copynumber: 2.8 Consensus size: 53
112605 CTTACACGGT
* * *
112615 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATCA
*
112670 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATCA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATCA
** *
112723 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
112766 GCGCACTTAT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
52 1 0.01
53 80 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATCA
Found at i:120210 original size:53 final size:53
Alignment explanation
Indices: 120129--120279 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
120119 CTTACACGGT
* *
120129 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
120184 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
120237 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
120280 GCGCACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:121788 original size:15 final size:16
Alignment explanation
Indices: 121758--121790 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
121748 TATCTGATAA
121758 ATTAAAAGAATTAAGT
1 ATTAAAAGAATTAAGT
*
121774 ATTAAAA-ATTTAAGT
1 ATTAAAAGAATTAAGT
121789 AT
1 AT
121791 GAAATTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (16 bp):
ATTAAAAGAATTAAGT
Found at i:128507 original size:43 final size:43
Alignment explanation
Indices: 128446--128532 Score: 156
Period size: 43 Copynumber: 2.0 Consensus size: 43
128436 AGAATTTTAG
*
128446 TCTCGTACACCGCATGGCCTTAGGTGATTTTTTAACTTAAAAA
1 TCTCGTACACCGCATGGCCTTAAGTGATTTTTTAACTTAAAAA
*
128489 TCTCGTACACCGCGTGGCCTTAAGTGATTTTTTAACTTAAAAA
1 TCTCGTACACCGCATGGCCTTAAGTGATTTTTTAACTTAAAAA
128532 T
1 T
128533 GGAATCATTA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.36
Consensus pattern (43 bp):
TCTCGTACACCGCATGGCCTTAAGTGATTTTTTAACTTAAAAA
Found at i:133186 original size:175 final size:174
Alignment explanation
Indices: 132838--133191 Score: 584
Period size: 175 Copynumber: 2.0 Consensus size: 174
132828 ATAAAAATAA
132838 TATTTTAATATTGTAGAGTTATTTGCATTTTCTTTCCTCTCATTTTCCCACAATTGGGATATTAA
1 TATTTTAATATTGTAGAGTTATTTGCATTTTCTTTCCTCTCATTTTCCCACAATTGGGATATTAA
** * *
132903 ACAATGGAGTAAAACTAAAAAAGTTAGGGATTCTCAATTCCTTTCCTTTCTCTCTCTTTCTAAAA
66 ACAATGGAGTAAAACTAAAAAAGCGAGGGATTCTCAATTACTTTCCTTTCTCTCTCTTTATAAAA
132968 TTCACTTGTCCAAATAAAGAAAAGGAATCTCTTTTCTCTCACTT
131 TTCACTTGTCCAAATAAAGAAAAGGAATCTCTTTTCTCTCACTT
**
133012 TATTTTAATATTGTAGAGTTATTTGCATTTTCTTTCCTCTCATTTTCCCTTAATTGGGATATTAA
1 TATTTTAATATTGTAGAGTTATTTGCATTTTCTTTCCTCTCATTTTCCCACAATTGGGATATTAA
* *
133077 A-AAGTGGAGTAAAGCTAAATAAAGCGAGGGATTCTCAATTATTTTCCTTTCTCTCTCTTTATAA
66 ACAA-TGGAGTAAAACTAAA-AAAGCGAGGGATTCTCAATTACTTTCCTTTCTCTCTCTTTATAA
* * *
133141 AATTCGCTTGTTCAAATAAAGAAAAGGAATCTTTTTTCTCTCACTT
129 AATTCACTTGTCCAAATAAAGAAAAGGAATCTCTTTTCTCTCACTT
133187 TATTT
1 TATTT
133192 AACTTTCCCT
Statistics
Matches: 167, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
173 2 0.01
174 78 0.47
175 87 0.52
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.42
Consensus pattern (174 bp):
TATTTTAATATTGTAGAGTTATTTGCATTTTCTTTCCTCTCATTTTCCCACAATTGGGATATTAA
ACAATGGAGTAAAACTAAAAAAGCGAGGGATTCTCAATTACTTTCCTTTCTCTCTCTTTATAAAA
TTCACTTGTCCAAATAAAGAAAAGGAATCTCTTTTCTCTCACTT
Found at i:136369 original size:23 final size:23
Alignment explanation
Indices: 136341--136386 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
136331 CTATGATAAC
136341 CCCACCAATAAGACATCAAAAAA
1 CCCACCAATAAGACATCAAAAAA
136364 CCCACCAATAAGACATCAAAAAA
1 CCCACCAATAAGACATCAAAAAA
136387 TTGGGGCACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.57, C:0.30, G:0.04, T:0.09
Consensus pattern (23 bp):
CCCACCAATAAGACATCAAAAAA
Found at i:137150 original size:18 final size:18
Alignment explanation
Indices: 137127--137161 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
137117 TTATTTTTAC
*
137127 CTAATTAATATTTAGATG
1 CTAATTAATACTTAGATG
*
137145 CTAATTTATACTTAGAT
1 CTAATTAATACTTAGAT
137162 ATTATAATTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.46
Consensus pattern (18 bp):
CTAATTAATACTTAGATG
Found at i:139082 original size:20 final size:20
Alignment explanation
Indices: 139057--139095 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
139047 GAAGCAAATA
139057 TAAATGAAGTAAAATACAAG
1 TAAATGAAGTAAAATACAAG
139077 TAAATGAAGTAAAATACAA
1 TAAATGAAGTAAAATACAA
139096 TCTGAATATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.62, C:0.05, G:0.13, T:0.21
Consensus pattern (20 bp):
TAAATGAAGTAAAATACAAG
Found at i:159411 original size:27 final size:27
Alignment explanation
Indices: 159373--159425 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
159363 TAATATAGGG
159373 GTGGAGGGTACCCCACAGGCGGCACCA
1 GTGGAGGGTACCCCACAGGCGGCACCA
159400 GTGGAGGGTACCCCACAGGCGGCACC
1 GTGGAGGGTACCCCACAGGCGGCACC
159426 GGTCTCTCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.21, C:0.34, G:0.38, T:0.08
Consensus pattern (27 bp):
GTGGAGGGTACCCCACAGGCGGCACCA
Found at i:159483 original size:22 final size:22
Alignment explanation
Indices: 159443--159484 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
159433 CCTCTGCACC
* *
159443 GACGGGACTTCGCATTGCCACG
1 GACGGGACTCCGCACTGCCACG
*
159465 GACGGGACTCCTCACTGCCA
1 GACGGGACTCCGCACTGCCA
159485 TTGCTTTTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.19, C:0.36, G:0.29, T:0.17
Consensus pattern (22 bp):
GACGGGACTCCGCACTGCCACG
Found at i:159584 original size:11 final size:10
Alignment explanation
Indices: 159570--159608 Score: 51
Period size: 11 Copynumber: 3.6 Consensus size: 10
159560 AAGGGGGAAG
159570 GAGAAGAGAAA
1 GAGAAGAG-AA
159581 GAGAAGAGAA
1 GAGAAGAGAA
159591 GAGAAGAAGAA
1 GAGAAG-AGAA
159602 GAAGAAG
1 G-AGAAG
159609 GAGGAGGAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
10 8 0.31
11 13 0.50
12 5 0.19
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (10 bp):
GAGAAGAGAA
Found at i:159587 original size:5 final size:5
Alignment explanation
Indices: 159570--159608 Score: 51
Period size: 5 Copynumber: 7.2 Consensus size: 5
159560 AAGGGGGAAG
159570 GAGAA GAGAAA GAGAA GAGAA GAGAA GAAGAA GAAGAA G
1 GAGAA GAG-AA GAGAA GAGAA GAGAA G-AGAA G-AGAA G
159609 GAGGAGGAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 16 0.50
6 16 0.50
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (5 bp):
GAGAA
Found at i:159591 original size:16 final size:16
Alignment explanation
Indices: 159570--159608 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
159560 AAGGGGGAAG
159570 GAGAAGAGAA-AGAGAA
1 GAGAAGAGAAGA-AGAA
159586 GAGAAGAGAAGAAGAA
1 GAGAAGAGAAGAAGAA
159602 GAAGAAG
1 G-AGAAG
159609 GAGGAGGAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (16 bp):
GAGAAGAGAAGAAGAA
Found at i:160453 original size:286 final size:279
Alignment explanation
Indices: 160120--160855 Score: 894
Period size: 286 Copynumber: 2.6 Consensus size: 279
160110 AATATATTTT
*
160120 AAAAATCCGAAAATAAAATAAAAAAGGCCAAAATCAGAGGTTTTTTACTAAATTAATATAAATAT
1 AAAAATCCGAAAA-AAAATAAAAAAGGCCAAAATCAGA-GTTTTTTACTAAATTAATATAAA-AA
*
160185 ACTAAAATAATATATATGAAACATTATGTAATAAAAAAATAAAAAAATAAAATACGAAAATAGTA
63 ACTAAAATAATATATATGAAACATTATGTACTAAAAAAATAAAAAAATAAAATACGAAAATAGTA
*
160250 TATTTTGGAAAATAAAATCTGAAAATAAAATAAAAAACAAACGGCTAAAATCAGAAATTTTTACT
128 TATTTT--AAAATAAAATCTGAAAATAAAATAAAAAA-AAACGGCCAAAATCAGAAATTTTTACT
160315 AAATTAATATAAAAAAACCAAAATAATACATTTGAAACATTATGTACTAAAATAATAT-AAAAAA
190 AAATTAATAT-AAAAAACCAAAATAATACA--TGAAACATTATGTACTAAAATAATATAAAAAAA
* * *
160379 TAAAATACGAAAATAGTATATTTT-TAA
252 TAAAATACGAAAATAATAAATTTTAAAA
* *
160406 AAAAATCCGAAAACAAAATAAAAAAAGGCCAAAATCACAGATTTTTACTAAATTAATATAAAAAA
1 AAAAATCCGAAAA-AAAAT-AAAAAAGGCCAAAATCAGAGTTTTTTACTAAATTAATAT-AAAAA
* * * * *
160471 ACAAAAAT-A-ATACATGGAACATTATGTACTAAAATAATATAAAAAAACAAAATACGAAAATAA
63 ACTAAAATAATATATATGAAACATTATGTACTAAAA-AA-ATAAAAAAATAAAATACGAAAATAG
* * * * * *** *
160534 TATATCTTAAAAAATAAAATC-CAAAA-ATAA-AAATAAAAAGGGCCAAAATCAGGGTTTTTTTC
126 TATAT-TT-TAAAATAAAATCTGAAAATAAAATAAAAAAAAACGGCCAAAATCAGAAATTTTTAC
*
160596 TAAATTAATATAAAAAACTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAAATA
189 TAAATTAATATAAAAAACCAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAAATA
*
160661 AAATATGAAAATAATAAATTTTAAAAA
254 AAATACGAAAATAATAAATTTT-AAAA
* *
160688 ATAAAATCCGAAATAAAAAT-AAAAAGGCCAAAATTAGAGTTTTTTTTTTCTAAATTAATATAAA
1 A-AAAATCCGAAA-AAAAATAAAAAAGGCCAAAATCAGAG---TTTTTTACTAAATTAATATAAA
* * * * *
160752 AAACTAAAATAATACATTTGAAACATTATATACTAAAGTAATATAAAAGAATAAAATACGAAAAT
61 AAACTAAAATAATATATATGAAACATTATGTACTAAA--AAAATAAAAAAATAAAATACGAAAAT
160817 AGTATATTTTAAAATTTTAAAATCTGAAAATAAAATAAA
124 AGTATATTTTAAAA---TAAAATCTGAAAATAAAATAAA
160856 TACCAAAATA
Statistics
Matches: 384, Mismatches: 42, Indels: 45
0.82 0.09 0.10
Matches are distributed among these distances:
279 26 0.07
280 27 0.07
281 35 0.09
282 34 0.09
283 37 0.10
284 46 0.12
285 53 0.14
286 92 0.24
287 28 0.07
288 3 0.01
289 3 0.01
ACGTcount: A:0.59, C:0.08, G:0.07, T:0.27
Consensus pattern (279 bp):
AAAAATCCGAAAAAAAATAAAAAAGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAACT
AAAATAATATATATGAAACATTATGTACTAAAAAAATAAAAAAATAAAATACGAAAATAGTATAT
TTTAAAATAAAATCTGAAAATAAAATAAAAAAAAACGGCCAAAATCAGAAATTTTTACTAAATTA
ATATAAAAAACCAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACG
AAAATAATAAATTTTAAAA
Found at i:160605 original size:142 final size:142
Alignment explanation
Indices: 160121--160830 Score: 859
Period size: 142 Copynumber: 5.0 Consensus size: 142
160111 ATATATTTTA
* * *
160121 AAAATCCGAAAAT-AAAATAAAAAAGGCCAAAATCAGAGGTTTTTTACTAAATTAATATAAATAT
1 AAAATCCAAAAATAAAAATAAAAAAGGCCAAAATCAG-GGTTTTTTACTAAATTAATATAAAAAA
* *
160185 ACTAAAATAATATATATGAAACATTATGTAATAAAA-AA-ATAAAAAAATAAAATACGAAAATAG
65 ACTAAAAT-A-ATACATGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATAG
**
160248 TATATTTTGGAAAAT
128 TATATTTTAAAAAAT
** * * ***
160263 AAAATCTGAAAATAAAATAAAAAACAAACGGCTAAAATCAGAAATTTTTACTAAATTAATATAAA
1 AAAATCCAAAAAT-AAA-AATAAA-AAA-GGCCAAAATCAGGGTTTTTTACTAAATTAATATAAA
*
160328 AAAACCAAAATAATACATTTGAAACATTATGTACTAAAATAATAT-AAAAAATAAAATACGAAAA
62 AAAACTAAAATAATACA--TGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAA
*
160392 TAGTATATTTT--TAAA-
125 TAGTATATTTTAAAAAAT
* * ** *
160407 AAAATCCGAAAA-CAAAATAAAAAAAGGCCAAAATCACAGATTTTTACTAAATTAATATAAAAAA
1 AAAATCCAAAAATAAAAAT-AAAAAAGGCCAAAATCAGGGTTTTTTACTAAATTAATATAAAAAA
* * * *
160471 ACAAAAATAATACATGGAACATTATGTACTAAAATAATATAAAAAAACAAAATACGAAAATAATA
65 ACTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATAGTA
*
160536 TATCTTAAAAAAT
130 TATTTTAAAAAAT
* *
160549 AAAATCCAAAAATAAAAATAAAAAGGGCCAAAATCAGGGTTTTTTTCTAAATTAATAT-AAAAAA
1 AAAATCCAAAAATAAAAATAAAAAAGGCCAAAATCAGGGTTTTTTACTAAATTAATATAAAAAAA
* * *
160613 CTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAAATAAAATATGAAAATAATAA
66 CTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATAGTAT
160678 ATTTTAAAAAAT
131 ATTTTAAAAAAT
* * * *
160690 AAAATCC-GAAATAAAAAT-AAAAAGGCCAAAATTAGAGTTTTTTTTTTCTAAATTAATAT-AAA
1 AAAATCCAAAAATAAAAATAAAAAAGGCCAAAATCAG-G--GTTTTTTACTAAATTAATATAAAA
* * *
160752 AAACTAAAATAATACATTTGAAACATTATATACTAAAGTAATATAAAAGAATAAAATACGAAAAT
63 AAACTAAAATAATACA--TGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAAT
160817 AGTATATTTTAAAA
126 AGTATATTTTAAAA
160831 TTTTAAAATC
Statistics
Matches: 501, Mismatches: 47, Indels: 38
0.85 0.08 0.06
Matches are distributed among these distances:
138 25 0.05
139 42 0.08
140 60 0.12
141 92 0.18
142 100 0.20
143 5 0.01
144 72 0.14
145 9 0.02
146 51 0.10
147 43 0.09
148 2 0.00
ACGTcount: A:0.59, C:0.08, G:0.07, T:0.27
Consensus pattern (142 bp):
AAAATCCAAAAATAAAAATAAAAAAGGCCAAAATCAGGGTTTTTTACTAAATTAATATAAAAAAA
CTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATAGTAT
ATTTTAAAAAAT
Found at i:160671 original size:15 final size:15
Alignment explanation
Indices: 160647--160694 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
160637 GTACTAAAAT
160647 AATATAAAAAAATAA
1 AATATAAAAAAATAA
*
160662 AATATGAAAATAAT-A
1 AATAT-AAAAAAATAA
* *
160677 AATTTTAAAAAATAA
1 AATATAAAAAAATAA
160692 AAT
1 AAT
160695 CCGAAATAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
14 6 0.22
15 14 0.52
16 7 0.26
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (15 bp):
AATATAAAAAAATAA
Found at i:167050 original size:22 final size:25
Alignment explanation
Indices: 167024--167068 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
167014 TAAATTACCT
167024 TTTCTTT-TTT-T-TCTTCTTCTCC
1 TTTCTTTCTTTCTATCTTCTTCTCC
167046 TTTCTTTCTTTCTATCTTCTTCT
1 TTTCTTTCTTTCTATCTTCTTCT
167069 TCTGTAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 7 0.35
23 3 0.15
24 1 0.05
25 9 0.45
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.71
Consensus pattern (25 bp):
TTTCTTTCTTTCTATCTTCTTCTCC
Found at i:167185 original size:27 final size:27
Alignment explanation
Indices: 167155--167213 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
167145 GAGAAAGGCA
167155 CCACCGGTGCCGCCTGTGGGGTACCCT
1 CCACCGGTGCCGCCTGTGGGGTACCCT
*
167182 CCACTGGTGCCGCCTGTGGGGTACCCT
1 CCACCGGTGCCGCCTGTGGGGTACCCT
*
167209 TCACC
1 CCACC
167214 CCTATTATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.08, C:0.41, G:0.31, T:0.20
Consensus pattern (27 bp):
CCACCGGTGCCGCCTGTGGGGTACCCT
Found at i:168495 original size:15 final size:15
Alignment explanation
Indices: 168475--168504 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
168465 CTAAAAACAC
168475 CACCACAACCAACTT
1 CACCACAACCAACTT
168490 CACCACAACCAACTT
1 CACCACAACCAACTT
168505 TATATGAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.47, G:0.00, T:0.13
Consensus pattern (15 bp):
CACCACAACCAACTT
Found at i:170816 original size:29 final size:29
Alignment explanation
Indices: 170784--170840 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
170774 AATAGTTAAT
*
170784 TGACCAATTTGTAACTTTTAATAGTTGGA
1 TGACCAATTTCTAACTTTTAATAGTTGGA
* *
170813 TGACCATTTTCTAACTTTTCATAGTTGG
1 TGACCAATTTCTAACTTTTAATAGTTGG
170841 GTGAGAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.26, C:0.14, G:0.16, T:0.44
Consensus pattern (29 bp):
TGACCAATTTCTAACTTTTAATAGTTGGA
Found at i:173710 original size:49 final size:49
Alignment explanation
Indices: 173653--173750 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
173643 AAAATACTTA
173653 GTTTCCCAAGTACCTAAATGCAGAAACTAATGGCAATCCAATTTCCTTT
1 GTTTCCCAAGTACCTAAATGCAGAAACTAATGGCAATCCAATTTCCTTT
173702 GTTTCCCAAGTACCTAAATGCAGAAACTAATGGCAATCCAATTTCCTTT
1 GTTTCCCAAGTACCTAAATGCAGAAACTAATGGCAATCCAATTTCCTTT
173751 AAATAATAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.31
Consensus pattern (49 bp):
GTTTCCCAAGTACCTAAATGCAGAAACTAATGGCAATCCAATTTCCTTT
Found at i:174684 original size:3 final size:3
Alignment explanation
Indices: 174676--174710 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
174666 AGGGTTAACT
174676 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TG
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TG
174711 GGTCTGGTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.34, T:0.34
Consensus pattern (3 bp):
TGA
Found at i:176397 original size:15 final size:14
Alignment explanation
Indices: 176357--176386 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
176347 ATCTCTCATC
176357 TATCTATCTATTTTT
1 TATCTAT-TATTTTT
176372 TATCTATTATTTTT
1 TATCTATTATTTTT
176386 T
1 T
176387 CTTTAGTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.20, C:0.10, G:0.00, T:0.70
Consensus pattern (14 bp):
TATCTATTATTTTT
Found at i:181194 original size:37 final size:37
Alignment explanation
Indices: 181123--181194 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 37
181113 AAAAATATAT
* *
181123 ATATAAAATATTTACAATAATGATGTAAATAAACAAC
1 ATATAAAATATTTACAATAATCATATAAATAAACAAC
181160 ATATAAAATATTTGA-AATAA-CATATAAATGAAACA
1 ATATAAAATATTT-ACAATAATCATATAAAT-AAACA
181195 TTTTAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 7 0.23
37 23 0.74
38 1 0.03
ACGTcount: A:0.58, C:0.07, G:0.06, T:0.29
Consensus pattern (37 bp):
ATATAAAATATTTACAATAATCATATAAATAAACAAC
Found at i:183365 original size:88 final size:87
Alignment explanation
Indices: 183253--183463 Score: 266
Period size: 88 Copynumber: 2.4 Consensus size: 87
183243 ACGTGAGCAA
* * * * *
183253 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAA-CAGAATTTGCCAAACAGATT-T
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAATTG-AAAAAACATTAT
* **
183316 TGGAAATACCTTGGCATGTGACC-CG
65 TGAAAATACCTCAGC--GTG-CCTCG
* *
183341 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAGCATAAATTGAAAAAACATTAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAATTGAAAAAACATT-AT
183406 TGAAAATACCTCAGCGTGCCTCG
65 TGAAAATACCTCAGCGTGCCTCG
183429 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
183464 GACGAACAGA
Statistics
Matches: 108, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
87 2 0.02
88 86 0.80
89 7 0.06
90 13 0.12
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (87 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAATTGAAAAAACATTATT
GAAAATACCTCAGCGTGCCTCG
Found at i:183613 original size:75 final size:73
Alignment explanation
Indices: 183403--183866 Score: 411
Period size: 75 Copynumber: 6.1 Consensus size: 73
183393 AAAAAACATT
183403 AATTGAAAATACCTCAGCGTG-CCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTG
1 AATTGAAAATACCTCAGCGTGTCCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
*
183465 ACGAACAGA
65 ACAAACAGA
* * *
183474 AATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCGATATGAGTTGATTTT
1 AATTGAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
183538 TGACAAACAGA
63 TGACAAACAGA
* *
183549 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTT
1 AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTT
*
183614 GA-AGAGCAGA
64 GACA-AACAGA
* ** *** * * * * * * *
183624 AATTGGAAAGCAGAAATCGAAAAT-ACCTCAGTGTGCCCTGAGGCTCAACTCACCTCTCGCATAT
1 AATT-GAAA--ATACCTC-AGCGTGTCCT--GAG-G--CTCA-ACTC-AC-C-TCTCGC-AATAT
*
183688 GAGTTGATTTTTTTGACAAACATA
52 GAGTTGA--TTTTTGACAAACAGA
*
183712 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTT
183777 GA-AAAGCAGA
64 GACAAA-CAGA
* *
183787 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
* *
183852 AAAACATA
66 CAAACAGA
183860 AATTGAA
1 AATTGAA
183867 GAAAACAGAA
Statistics
Matches: 321, Mismatches: 44, Indels: 54
0.77 0.11 0.13
Matches are distributed among these distances:
71 17 0.05
72 2 0.01
73 86 0.27
74 7 0.02
75 124 0.39
76 8 0.02
77 1 0.00
78 8 0.02
79 5 0.02
80 5 0.02
81 1 0.00
82 1 0.00
83 5 0.02
84 5 0.02
85 8 0.02
86 1 0.00
87 8 0.02
88 28 0.09
89 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (73 bp):
AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
CAAACAGA
Found at i:183815 original size:238 final size:236
Alignment explanation
Indices: 183340--183951 Score: 841
Period size: 238 Copynumber: 2.6 Consensus size: 236
183330 CATGTGACCC
* * **
183340 GAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAGCATAAATTGAAAAAACATTAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTGAGAAAACAGAAA
183405 TTGAAAATACCTCAGCGTGCCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTGA
66 TTGAAAATACCTCAGCGTGCCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
* *
183466 CGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCGATATGAGT
130 CAAACAGAAATTGAAAAGACCTCAGCA-GTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGT
* *
183531 TGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCT
194 TGATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGCCCT
* * * *
183574 GAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAGAGCAGAAATTG-GAAAGCAGA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAGCATAAATTGAGAAAACAGA
* *
183638 AATCGAAAATACCTCAGTGTGCCCTGAGGCTCAACTCACCTCTCGC-ATATGAGTTGATTTTTTT
64 AATTGAAAATACCTCAGCGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
* ** *
183702 GACAAACATAAATTGAAATTACCTCAGC-GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGA
128 GACAAACAGAAATTGAAAAGACCTCAGCAGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGA
183765 GTTGATTTTTTTGA-AAAGCAGAAATTGAAAATACCTCAGCGTGCCCT
192 GTTGA--TTTTTGACAAA-CAGAAATTGAAAATACCTCAGCGTGCCCT
* *
183812 GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAACATAAATTGAAGAAAACAGAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTG-AGAAAACAGAA
* *
183877 ATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG
65 ATTGAAAATACCTCAGCGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
*
183940 AAAAACAGAAAT
129 ACAAACAGAAAT
183952 AAAACATCAG
Statistics
Matches: 333, Mismatches: 31, Indels: 25
0.86 0.08 0.06
Matches are distributed among these distances:
234 42 0.13
235 47 0.14
236 73 0.22
237 19 0.06
238 141 0.42
239 11 0.03
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.27
Consensus pattern (236 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTGAGAAAACAGAAA
TTGAAAATACCTCAGCGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAC
AAACAGAAATTGAAAAGACCTCAGCAGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGCCCT
Found at i:183873 original size:16 final size:16
Alignment explanation
Indices: 183852--183882 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
183842 TGATTTTTGA
*
183852 AAAACATAAATTGAAG
1 AAAACAGAAATTGAAG
183868 AAAACAGAAATTGAA
1 AAAACAGAAATTGAA
183883 ATTACCTCAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.06, G:0.13, T:0.16
Consensus pattern (16 bp):
AAAACAGAAATTGAAG
Found at i:183935 original size:89 final size:90
Alignment explanation
Indices: 183777--183951 Score: 298
Period size: 89 Copynumber: 2.0 Consensus size: 90
183767 TGATTTTTTT
*
183777 GAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGC
1 GAAAAGCAGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGC
*
183842 TGATTTTTGAAAAACATAAATTGAA
66 TGATTTTTGAAAAACAGAAATTGAA
* * *
183867 GAAAA-CAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 GAAAAGCAGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGC
183931 TGATTTTTGAAAAACAGAAAT
66 TGATTTTTGAAAAACAGAAAT
183952 AAAACATCAG
Statistics
Matches: 80, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
89 75 0.94
90 5 0.06
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.25
Consensus pattern (90 bp):
GAAAAGCAGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGC
TGATTTTTGAAAAACAGAAATTGAA
Found at i:198426 original size:25 final size:26
Alignment explanation
Indices: 198387--198477 Score: 87
Period size: 27 Copynumber: 3.5 Consensus size: 26
198377 TGCACATGAC
*
198387 GTATATAAAAGATATATACACAATATG
1 GTAT-TAAAATATATATACACAATATG
* *
198414 GTATTAAGAATATATATATACAATATA
1 GTATTAA-AATATATATACACAATATG
* * *
198441 GTATTTAAA-ATATATACATAAGATG
1 GTATTAAAATATATATACACAATATG
198466 GTA-TAGAAATAT
1 GTATTA-AAATAT
198478 GTACTTGGAA
Statistics
Matches: 52, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
24 1 0.02
25 18 0.35
26 7 0.13
27 26 0.50
ACGTcount: A:0.51, C:0.04, G:0.11, T:0.34
Consensus pattern (26 bp):
GTATTAAAATATATATACACAATATG
Found at i:198675 original size:43 final size:43
Alignment explanation
Indices: 198627--198718 Score: 116
Period size: 43 Copynumber: 2.1 Consensus size: 43
198617 ATATATATAA
* *
198627 ATAATAGTATTAGCAATATACAA-T-ATAATATAGAAATATACAT
1 ATAATAGTATAAGAAATATACAACTAATAATAT-GAAA-ATACAT
* *
198670 ATAATAGTATAAGAAATATATAACTAATAATATTAAAATACAT
1 ATAATAGTATAAGAAATATACAACTAATAATATGAAAATACAT
198713 ATAATA
1 ATAATA
198719 CTAAATATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 32 0.74
44 4 0.09
45 7 0.16
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.33
Consensus pattern (43 bp):
ATAATAGTATAAGAAATATACAACTAATAATATGAAAATACAT
Found at i:199015 original size:3 final size:3
Alignment explanation
Indices: 199007--199033 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
198997 TGTAATATGG
199007 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
199034 GGATAATATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:199221 original size:3 final size:3
Alignment explanation
Indices: 199151--199203 Score: 70
Period size: 3 Copynumber: 17.3 Consensus size: 3
199141 GAATATATAC
* * *
199151 TAA TACA TAA TAA TAA TAA TAA TAA TAA TAA CAA TAC TAA TAA TAC
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
199197 TAA TAA T
1 TAA TAA T
199204 TCAAAAATAA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
3 40 0.93
4 3 0.07
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:199695 original size:16 final size:16
Alignment explanation
Indices: 199656--199701 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
199646 GAAAAAAAGA
* *
199656 AAAAAAGAGAAGGGAG
1 AAAAGAGAGAGGGGAG
199672 AAAAGAGAGAGGGGAG
1 AAAAGAGAGAGGGGAG
**
199688 AAGGGAGAGAGGGG
1 AAAAGAGAGAGGGG
199702 CTCCGGCGTG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (16 bp):
AAAAGAGAGAGGGGAG
Found at i:200272 original size:22 final size:22
Alignment explanation
Indices: 200215--200272 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
200205 TACGAGGACT
* * *
200215 GTGGAGGTATGGGACTGTTGTA
1 GTGGAGGTATGGGGCCGCTGTA
200237 GTAGG-GGTATGGGGCCGCTGTA
1 GT-GGAGGTATGGGGCCGCTGTA
200259 GTGGAGGTATGGGG
1 GTGGAGGTATGGGG
200273 TTGCTTCATG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
21 2 0.06
22 27 0.87
23 2 0.06
ACGTcount: A:0.16, C:0.07, G:0.52, T:0.26
Consensus pattern (22 bp):
GTGGAGGTATGGGGCCGCTGTA
Found at i:200816 original size:15 final size:15
Alignment explanation
Indices: 200792--200824 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
200782 TTGATCTTTG
*
200792 AAAAATATAAATTGA
1 AAAAACATAAATTGA
200807 AAAAACATAAATTGA
1 AAAAACATAAATTGA
200822 AAA
1 AAA
200825 TACCTCAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.70, C:0.03, G:0.06, T:0.21
Consensus pattern (15 bp):
AAAAACATAAATTGA
Found at i:201011 original size:89 final size:89
Alignment explanation
Indices: 200746--201164 Score: 458
Period size: 89 Copynumber: 4.7 Consensus size: 89
200736 TACTCGGTGT
* ** * * * *
200746 GTGATCCTGA-GCTCAACTCATTTCTCGCAATATGAATTGATCTTTGAAAAATATAAATTGAAAA
1 GTGAGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTG-AAA
*
200810 AACATAAATTGAAAATACCTCAGCA
65 AACAGAAATTGAAAATACCTCAGCA
* ** *** *
200835 TGTGAGCC-GAGGCTCAACTCACCTCTCTCAATATGAGTTTTTTTTTGTAACTGCGGAAATTGAA
1 -GTGAGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAAACAGAAATTGAA
200899 AAACAGAAATTGAAAATACCTCAGC-
64 AAACAGAAATTGAAAATACCTCAGCA
* * * * *
200924 GTG-CCCTGAGGCTTAACTCACTTCTCGCAATATGAGCTGATTTTTGAAAAACATAAATTGGAGA
1 GTGAGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT-GA-A
*
200988 AAACAGAAATTGAAATTACCTCAGCA
64 AAACAGAAATTGAAAATACCTCAGCA
* * *
201014 -TG-TCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTGAAAAATAGAAATT-AAAA
1 GTGAGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAA
* *
201076 ATAGAAATTGAAAAGACCTCAGCA
66 ACAGAAATTGAAAATACCTCAGCA
* * *
201100 TGTGAGCC-GAGGCTCATCTCACCTCTCGCGATATGAGTTGATTTTTTGACAAACAGAAATTGAA
1 -GTGAGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAA
201164 A
64 A
201165 TTACCTTAGC
Statistics
Matches: 274, Mismatches: 44, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
86 24 0.09
87 11 0.04
88 70 0.26
89 97 0.35
90 64 0.23
91 8 0.03
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (89 bp):
GTGAGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAA
ACAGAAATTGAAAATACCTCAGCA
Found at i:201077 original size:13 final size:14
Alignment explanation
Indices: 201056--201089 Score: 61
Period size: 13 Copynumber: 2.5 Consensus size: 14
201046 GAGTTGATTT
201056 TTGAAAAATAGAAA
1 TTGAAAAATAGAAA
201070 TT-AAAAATAGAAA
1 TTGAAAAATAGAAA
201083 TTGAAAA
1 TTGAAAA
201090 GACCTCAGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.65, C:0.00, G:0.12, T:0.24
Consensus pattern (14 bp):
TTGAAAAATAGAAA
Found at i:201201 original size:74 final size:73
Alignment explanation
Indices: 201073--201308 Score: 296
Period size: 72 Copynumber: 3.2 Consensus size: 73
201063 ATAGAAATTA
* ** * * *
201073 AAAATAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCATCTCACCTCTCGCGATATGAG
1 AAAACAGAAATTGAAATTACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAG
201137 TTGATTTTTTG
63 TTGATTTTTTG
*
201148 ACAAACAGAAATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 A-AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
201213 GA-TTTTCG
65 GATTTTTTG
* * **
201221 AAAACGGAGATCAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
201286 ATTATTTTG
66 ATT-TTTTG
201295 AAAGACAGAAATTG
1 AAA-ACAGAAATTG
201309 GAAAGCAGAA
Statistics
Matches: 138, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
72 60 0.43
73 9 0.07
74 41 0.30
75 7 0.05
76 21 0.15
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (73 bp):
AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTG
Found at i:201445 original size:164 final size:164
Alignment explanation
Indices: 201153--201962 Score: 1142
Period size: 164 Copynumber: 4.9 Consensus size: 164
201143 TTTTGACAAA
* * * *
201153 CAGAAATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--T
1 CAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* ** * **
201216 TTTCGA-AAACGGAGATCAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
66 TTTTGACAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
*
201280 GAGTTGATTATTTTGAA-AGACAGAAATTGGAAAG
131 GAGTTGATTTTTTTGAAGAG-CAGAAATTGGAAAG
*
201314 CAGAAATCGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 CAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* * *
201379 TTTTGACCAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGTTCAACTCACCTCTCGCAATAT
66 TTTTGACAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
201444 GAGTTGATTTTTTTGAAGAGCAGAAATTGGAAAG
131 GAGTTGATTTTTTTGAAGAGCAGAAATTGGAAAG
* * * * *
201478 AATAAAACGAAAATACTTCAGTGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 CAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* *
201543 TTTTGACCAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
66 TTTTGACAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
201608 GAGTTGATTTTTTTGAAGAGCAGAAATTGGAAAG
131 GAGTTGATTTTTTTGAAGAGCAGAAATTGGAAAG
* * *
201642 CAAAAATCAAAAATACCTCAGTGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 CAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
201707 TTTTGACAAACATAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
66 TTTTGACAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
* *
201772 GAGTTGATTTTTTTGAAAAGCAGAAATTGAAAAG
131 GAGTTGATTTTTTTGAAGAGCAGAAATTGGAAAG
* * *
201806 CAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGAGCTGATTT
1 CAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---
* * *
201871 TTTGAAAAATATAAATTGAAGAAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACT
63 TTT------T-T---TTG-A-CAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACT
201936 CACCTCTCGCAATATGAGTTGATTTTT
116 CACCTCTCGCAATATGAGTTGATTTTT
201963 GAAAAACAGA
Statistics
Matches: 588, Mismatches: 42, Indels: 20
0.90 0.06 0.03
Matches are distributed among these distances:
161 57 0.10
163 6 0.01
164 447 0.76
165 2 0.00
167 3 0.01
173 1 0.00
174 1 0.00
177 3 0.01
178 1 0.00
179 67 0.11
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (164 bp):
CAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTTTGACAAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTTTGAAGAGCAGAAATTGGAAAG
Found at i:201450 original size:75 final size:75
Alignment explanation
Indices: 201312--201804 Score: 374
Period size: 75 Copynumber: 6.2 Consensus size: 75
201302 GAAATTGGAA
201312 AGCAGAAATCGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AGCAGAAATCGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
201377 TTTTTTGACC
66 TTTTTTGACC
* * * * * *
201387 AGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGAT
1 AGCAGAAATCGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
**
201452 TTTTTTGAAG
66 TTTTTTGACC
* *** ** * * * * *
201462 AGCAGAAATTGGAAAGAATAAAACGAAAATACTTCAGTGTGCCCTGAGGCTCAACTCACCTCTCG
1 AGCAGAAA-TCG-AA-AATACCTC-AACGTGC--C-CTGAG-GCT----C-AA-CTCACCTCTCG
201527 CAATATGAGTTGATTTTTTTGACC
52 CAATATGAGTTGATTTTTTTGACC
* * * * *
201551 AGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AGCAGAAATCGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
**
201616 TTTTTTGAAG
66 TTTTTTGACC
* **
201626 AGCAGAAATTGGAAAGCAAAAATCAAAAATACCTCAGTGTGCCCTGAGGCTCAACTCACCTCTCG
1 AGCAGAAA-T------C------GAA-AATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCG
*
201691 CAATATGAGTTGATTTTTTTGACA
52 CAATATGAGTTGATTTTTTTGACC
* * * * * * *
201715 AACATAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AGCAGAAATCGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
**
201780 TTTTTTGAAA
66 TTTTTTGACC
*
201790 AGCAGAAATTGAAAA
1 AGCAGAAATCGAAAA
201805 GCAGAAATTG
Statistics
Matches: 327, Mismatches: 63, Indels: 56
0.73 0.14 0.13
Matches are distributed among these distances:
75 183 0.56
76 6 0.02
77 3 0.01
78 4 0.01
79 2 0.01
81 3 0.01
82 6 0.02
83 2 0.01
85 2 0.01
86 4 0.01
87 3 0.01
88 6 0.02
89 103 0.31
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (75 bp):
AGCAGAAATCGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTGACC
Found at i:201560 original size:89 final size:89
Alignment explanation
Indices: 201397--201561 Score: 258
Period size: 89 Copynumber: 1.9 Consensus size: 89
201387 AGCATAAATT
* * * *
201397 GAAATTACCTCAGCGTGTCCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAG
1 GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAC
201462 AGCAGAAATTGGAAAGAATAAAAC
66 AGCAGAAATTGGAAAGAATAAAAC
* * *
201486 GAAAATACTTCAGTGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACC
1 GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAC
*
201551 AGCATAAATTG
66 AGCAGAAATTG
201562 AAATTACCTC
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
89 68 1.00
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (89 bp):
GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAC
AGCAGAAATTGGAAAGAATAAAAC
Found at i:201803 original size:14 final size:14
Alignment explanation
Indices: 201784--201818 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
201774 GTTGATTTTT
201784 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
201798 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
201812 TTGAAAA
1 TTGAAAA
201819 TACCTCAGCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.57, C:0.06, G:0.20, T:0.17
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:201871 original size:89 final size:90
Alignment explanation
Indices: 201714--201975 Score: 395
Period size: 89 Copynumber: 2.9 Consensus size: 90
201704 TTTTTTTGAC
* *
201714 AAACATAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
201779 TTTTTTTGAAAAGCAGAAATTG-A-A
66 -TTTTTTGAAAAACAGAAATTGAAGA
* * * * *
201803 AAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGAGCTGA
1 AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* *
201868 TTTTTTGAAAAATATAAATTGAAGA
66 TTTTTTGAAAAACAGAAATTGAAGA
*
201893 AAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
201958 -TTTTTGAAAAACAGAAAT
66 TTTTTTGAAAAACAGAAAT
201976 AAAACATCAG
Statistics
Matches: 153, Mismatches: 18, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
88 18 0.12
89 75 0.49
90 60 0.39
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.27
Consensus pattern (90 bp):
AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTGAAAAACAGAAATTGAAGA
Found at i:204308 original size:16 final size:16
Alignment explanation
Indices: 204269--204314 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
204259 GAAAAAAAGA
* *
204269 AAAAAAGAGAAGGGAG
1 AAAAGAGAGAGGGGAG
204285 AAAAGAGAGAGGGGAG
1 AAAAGAGAGAGGGGAG
**
204301 AAGGGAGAGAGGGG
1 AAAAGAGAGAGGGG
204315 TTCCGGCGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (16 bp):
AAAAGAGAGAGGGGAG
Found at i:204859 original size:22 final size:22
Alignment explanation
Indices: 204829--204884 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
204819 TACGAGGACT
* *
204829 GTGGAGGTATGGGACTGTTGTA
1 GTGGAGGTATGGGACCGCTGTA
* *
204851 GTGGGGGTATGGGGCCGCTGTA
1 GTGGAGGTATGGGACCGCTGTA
204873 GTGGAGGTATGG
1 GTGGAGGTATGG
204885 AGTTGCTTCA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.14, C:0.07, G:0.52, T:0.27
Consensus pattern (22 bp):
GTGGAGGTATGGGACCGCTGTA
Found at i:206767 original size:27 final size:27
Alignment explanation
Indices: 206729--206783 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
206719 TGATTCTGTA
206729 TAAAATATTTTCCGTTATTTGAAAAAT
1 TAAAATATTTTCCGTTATTTGAAAAAT
*
206756 TAAAATATTTTCCGTTGTTTGAAAAAT
1 TAAAATATTTTCCGTTATTTGAAAAAT
206783 T
1 T
206784 TTCCTAAGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.38, C:0.07, G:0.09, T:0.45
Consensus pattern (27 bp):
TAAAATATTTTCCGTTATTTGAAAAAT
Found at i:210407 original size:13 final size:14
Alignment explanation
Indices: 210378--210410 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
210368 CAATATTAGT
210378 TTTTATAAAATAATA
1 TTTT-TAAAATAATA
210393 TTTTTAAAA-AATA
1 TTTTTAAAATAATA
210406 TTTTT
1 TTTTT
210411 CACCAACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.50
14 5 0.28
15 4 0.22
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TTTTTAAAATAATA
Found at i:217336 original size:200 final size:200
Alignment explanation
Indices: 216993--217386 Score: 788
Period size: 200 Copynumber: 2.0 Consensus size: 200
216983 AAACCCGAAC
216993 CCAATACAAGCCCAAATAAATAAACAAAAAATCCAAATGTTAATAGTCCATTAAGTGTCCAGTTT
1 CCAATACAAGCCCAAATAAATAAACAAAAAATCCAAATGTTAATAGTCCATTAAGTGTCCAGTTT
217058 ACAGGCCCAACACACCAAGACCAATGATAAAATCGGCCCAAATACAATAGGCCCAATGCCTGAAA
66 ACAGGCCCAACACACCAAGACCAATGATAAAATCGGCCCAAATACAATAGGCCCAATGCCTGAAA
217123 GCCAAAACCAAGGTAGAAACCCTAGCCTATGGTTGCGTCGCAGCTAGCCTCCAGCGCCTCTGTAT
131 GCCAAAACCAAGGTAGAAACCCTAGCCTATGGTTGCGTCGCAGCTAGCCTCCAGCGCCTCTGTAT
217188 TTGGG
196 TTGGG
217193 CCAATACAAGCCCAAATAAATAAACAAAAAATCCAAATGTTAATAGTCCATTAAGTGTCCAGTTT
1 CCAATACAAGCCCAAATAAATAAACAAAAAATCCAAATGTTAATAGTCCATTAAGTGTCCAGTTT
217258 ACAGGCCCAACACACCAAGACCAATGATAAAATCGGCCCAAATACAATAGGCCCAATGCCTGAAA
66 ACAGGCCCAACACACCAAGACCAATGATAAAATCGGCCCAAATACAATAGGCCCAATGCCTGAAA
217323 GCCAAAACCAAGGTAGAAACCCTAGCCTATGGTTGCGTCGCAGCTAGCCTCCAGCGCCTCTGTA
131 GCCAAAACCAAGGTAGAAACCCTAGCCTATGGTTGCGTCGCAGCTAGCCTCCAGCGCCTCTGTA
217387 CGCTCCAGCA
Statistics
Matches: 194, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
200 194 1.00
ACGTcount: A:0.38, C:0.27, G:0.16, T:0.19
Consensus pattern (200 bp):
CCAATACAAGCCCAAATAAATAAACAAAAAATCCAAATGTTAATAGTCCATTAAGTGTCCAGTTT
ACAGGCCCAACACACCAAGACCAATGATAAAATCGGCCCAAATACAATAGGCCCAATGCCTGAAA
GCCAAAACCAAGGTAGAAACCCTAGCCTATGGTTGCGTCGCAGCTAGCCTCCAGCGCCTCTGTAT
TTGGG
Found at i:219822 original size:131 final size:131
Alignment explanation
Indices: 219589--219913 Score: 503
Period size: 131 Copynumber: 2.5 Consensus size: 131
219579 TAATTATCCA
* * ** * * *
219589 TTTAAAAATTCTTTAAAACGAAGGCAATACTCGGTGTTTGGAAATTC-GGAAATCGTGCCCTATC
1 TTTAAAAATTCTTCAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
*
219653 GTGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAATCGAACATTCCTTTGGAATTTCACTCATGA
66 GTGCTGGGTTGCGATTTCTCGTTTGTTCAAAACAATCGAACATTCCTTTGGAATTTCACTCATGA
219718 C
131 C
*
219719 TTTAAAAATTCTTCAAAATGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
1 TTTAAAAATTCTTCAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
*
219784 GTGCTGGGTTGCGATTT-TCTGTTTGTTC-AAACTAATCGAATATTCCTTTGGAATTTCACTCAT
66 GTGCTGGGTTGCGATTTCTC-GTTTGTTCAAAAC-AATCGAACATTCCTTTGGAATTTCACTCAT
*
219847 GTC
129 GAC
*
219850 TTTAAAAATTCTTCAAAACGAAGGTAATGTTCTATGTTTGGCAATTCGGGGAATCGTGCCCTAT
1 TTTAAAAATTCTTCAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTAT
219914 TGATACGAGT
Statistics
Matches: 179, Mismatches: 13, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
130 46 0.26
131 133 0.74
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (131 bp):
TTTAAAAATTCTTCAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
GTGCTGGGTTGCGATTTCTCGTTTGTTCAAAACAATCGAACATTCCTTTGGAATTTCACTCATGA
C
Found at i:221179 original size:18 final size:18
Alignment explanation
Indices: 221156--221198 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
221146 AAAAAAAGTG
* *
221156 ATAAAAAAAGTACAAAAA
1 ATAAAAAAAGAAAAAAAA
* *
221174 ATAAAATACGAAAAAAAA
1 ATAAAAAAAGAAAAAAAA
221192 ATAAAAA
1 ATAAAAA
221199 TAAAATTCTG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.79, C:0.05, G:0.05, T:0.12
Consensus pattern (18 bp):
ATAAAAAAAGAAAAAAAA
Found at i:224054 original size:46 final size:46
Alignment explanation
Indices: 223970--224328 Score: 276
Period size: 46 Copynumber: 7.6 Consensus size: 46
223960 TTTGAGTACT
* * *
223970 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCT-TTAGCTACACTTA
1 TCTGATCAAGTGA-CAAGTGATAAGTGATAGCTATCAGCTACACTTA
* *
224016 TCTGATCAAGTGACAAGTGGA-AAGTGATAAG-TAAT-AGCTTCGGC-TA
1 TCTGATCAAGTGACAAGT-GATAAGTGAT-AGCT-ATCAGCTAC-ACTTA
* * * *
224062 TACTTATC---TGATCAAGTGATAAGTTATAGCT-TCGGCTATACTTA
1 T-CTGATCAAGTGA-CAAGTGATAAGTGATAGCTATCAGCTACACTTA
224106 TCTGATCAAGTGACAAAGTGATAAGTGATAGCT-TCAGCTACACTTA
1 TCTGATCAAGTGAC-AAGTGATAAGTGATAGCTATCAGCTACACTTA
*
224152 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCT-TCGGCTACACTTA
1 TCTGATCAAGTGAC-------AAGTGATAAGTGATAGCTATCAGCTACACTTA
* *
224204 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCT-TCGGCTATACTTA
1 TCTGATCAAGTGAC-------AAGTGATAAGTGATAGCTATCAGCTACACTTA
* *
224256 TCTGATCAAGAGACAAAGTGATAAGTGATAGCT-TTAGCTACACTTA
1 TCTGATCAAGTGAC-AAGTGATAAGTGATAGCTATCAGCTACACTTA
*
224302 TCTGATCAAGAGACAAAGTGATAAGTG
1 TCTGATCAAGTGAC-AAGTGATAAGTG
224329 GCTACACTTA
Statistics
Matches: 271, Mismatches: 21, Indels: 42
0.81 0.06 0.13
Matches are distributed among these distances:
43 7 0.03
44 13 0.05
45 24 0.09
46 126 0.46
47 7 0.03
52 94 0.35
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.29
Consensus pattern (46 bp):
TCTGATCAAGTGACAAGTGATAAGTGATAGCTATCAGCTACACTTA
Found at i:224055 original size:52 final size:52
Alignment explanation
Indices: 223984--224085 Score: 150
Period size: 52 Copynumber: 2.0 Consensus size: 52
223974 ATCAAGTGAT
** *
223984 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
* * *
224036 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGATAAGT
1 AAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT
224086 TATAGCTTCG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (52 bp):
AAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
Found at i:224091 original size:38 final size:38
Alignment explanation
Indices: 224037--224118 Score: 155
Period size: 38 Copynumber: 2.2 Consensus size: 38
224027 GACAAGTGGA
224037 AAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATC
1 AAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATC
*
224075 AAGTGATAAGTTATAGCTTCGGCTATACTTATCTGATC
1 AAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATC
224113 AAGTGA
1 AAGTGA
224119 CAAAGTGATA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.34
Consensus pattern (38 bp):
AAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATC
Found at i:224177 original size:98 final size:92
Alignment explanation
Indices: 223970--224365 Score: 358
Period size: 98 Copynumber: 4.3 Consensus size: 92
223960 TTTGAGTACT
* * * **
223970 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-----
* * *
224035 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
61 -AAAGTGATAAGTGATAGCTTCAGCTACACTTA
* *
224068 TCTGAT-------C-AAGTGATAAGTTATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAAGT
224125 GATAAGTGATAGCTTCAGCTACACTTA
66 GATAAGTGATAGCTTCAGCTACACTTA
*
224152 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 TCTGATCAAGAGAC------AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
* *
224217 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
60 C------AAAGTGATAAGTGATAGCTTCAGCTACACTTA
** *
224256 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAAGT
224321 GATAA--G-T-G-----GCTACACTTA
66 GATAAGTGATAGCTTCAGCTACACTTA
*
224339 TCTGATCAAGAAACAAAGTGATAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTG
224366 GCTACACTTA
Statistics
Matches: 259, Mismatches: 19, Indels: 55
0.78 0.06 0.17
Matches are distributed among these distances:
83 35 0.14
84 35 0.14
88 1 0.00
89 1 0.00
90 41 0.16
91 1 0.00
92 10 0.04
98 92 0.36
104 43 0.17
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (92 bp):
TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAAGT
GATAAGTGATAGCTTCAGCTACACTTA
Found at i:224185 original size:52 final size:51
Alignment explanation
Indices: 224120--224328 Score: 293
Period size: 52 Copynumber: 4.1 Consensus size: 51
224110 ATCAAGTGAC
*
224120 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGT-G
* *
224172 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
* *
224223 AAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC-----
1 -AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
*
224270 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGAC-AAGTG
224322 ATAAGTG
1 A-AAGTG
224329 GCTACACTTA
Statistics
Matches: 143, Mismatches: 6, Indels: 15
0.87 0.04 0.09
Matches are distributed among these distances:
46 43 0.30
51 1 0.01
52 94 0.66
53 5 0.03
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.27
Consensus pattern (51 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
Found at i:224336 original size:37 final size:37
Alignment explanation
Indices: 224292--224401 Score: 195
Period size: 37 Copynumber: 3.0 Consensus size: 37
224282 GATAGCTTTA
224292 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
224329 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
224366 GCTACACTTATCTGATCAAGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
224402 ATCATACGTA
Statistics
Matches: 70, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
36 12 0.17
37 58 0.83
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:225717 original size:49 final size:49
Alignment explanation
Indices: 225656--225897 Score: 421
Period size: 49 Copynumber: 4.9 Consensus size: 49
225646 ATGTGAACAT
225656 GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
225706 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
225755 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* *
225804 GTGATATGTGACTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* * * *
225853 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCG
225898 AGAAAACGAA
Statistics
Matches: 185, Mismatches: 7, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
49 181 0.98
50 4 0.02
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (49 bp):
GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
Found at i:229103 original size:46 final size:46
Alignment explanation
Indices: 229019--229377 Score: 276
Period size: 46 Copynumber: 7.6 Consensus size: 46
229009 TTTGAGTACT
* * *
229019 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCT-TTAGCTACACTTA
1 TCTGATCAAGTGA-CAAGTGATAAGTGATAGCTATCAGCTACACTTA
* *
229065 TCTGATCAAGTGACAAGTGGA-AAGTGATAAG-TAAT-AGCTTCGGC-TA
1 TCTGATCAAGTGACAAGT-GATAAGTGAT-AGCT-ATCAGCTAC-ACTTA
* * * *
229111 TACTTATC---TGATCAAGTGATAAGTTATAGCT-TCGGCTATACTTA
1 T-CTGATCAAGTGA-CAAGTGATAAGTGATAGCTATCAGCTACACTTA
229155 TCTGATCAAGTGACAAAGTGATAAGTGATAGCT-TCAGCTACACTTA
1 TCTGATCAAGTGAC-AAGTGATAAGTGATAGCTATCAGCTACACTTA
*
229201 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCT-TCGGCTACACTTA
1 TCTGATCAAGTGAC-------AAGTGATAAGTGATAGCTATCAGCTACACTTA
* *
229253 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCT-TCGGCTATACTTA
1 TCTGATCAAGTGAC-------AAGTGATAAGTGATAGCTATCAGCTACACTTA
* *
229305 TCTGATCAAGAGACAAAGTGATAAGTGATAGCT-TTAGCTACACTTA
1 TCTGATCAAGTGAC-AAGTGATAAGTGATAGCTATCAGCTACACTTA
*
229351 TCTGATCAAGAGACAAAGTGATAAGTG
1 TCTGATCAAGTGAC-AAGTGATAAGTG
229378 GCTACACTTA
Statistics
Matches: 271, Mismatches: 21, Indels: 42
0.81 0.06 0.13
Matches are distributed among these distances:
43 7 0.03
44 13 0.05
45 24 0.09
46 126 0.46
47 7 0.03
52 94 0.35
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.29
Consensus pattern (46 bp):
TCTGATCAAGTGACAAGTGATAAGTGATAGCTATCAGCTACACTTA
Found at i:229104 original size:52 final size:52
Alignment explanation
Indices: 229033--229134 Score: 150
Period size: 52 Copynumber: 2.0 Consensus size: 52
229023 ATCAAGTGAT
** *
229033 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
* * *
229085 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGATAAGT
1 AAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT
229135 TATAGCTTCG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (52 bp):
AAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
Found at i:229140 original size:38 final size:38
Alignment explanation
Indices: 229086--229167 Score: 155
Period size: 38 Copynumber: 2.2 Consensus size: 38
229076 GACAAGTGGA
229086 AAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATC
1 AAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATC
*
229124 AAGTGATAAGTTATAGCTTCGGCTATACTTATCTGATC
1 AAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATC
229162 AAGTGA
1 AAGTGA
229168 CAAAGTGATA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.34
Consensus pattern (38 bp):
AAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATC
Done.