Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 101 of 333
Found at i:32289351 original size:38 final size:38
Alignment explanation
Indices: 32289309--32289383 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
32289299 GAATTTTAAT
*
32289309 CCGGACATAATCTCTGT-ACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCT-TCACATAGCCAGCGGGTCTTTAC
* *
32289347 CCGGACATAATCTCTTCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTA
32289384 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTAC
Found at i:32291597 original size:47 final size:47
Alignment explanation
Indices: 32291519--32291830 Score: 480
Period size: 47 Copynumber: 6.6 Consensus size: 47
32291509 CCCTTCGGGA
* * * * * *
32291519 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32291566 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32291613 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32291660 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32291707 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32291756 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32291805 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
32291831 CACAATTATC
Statistics
Matches: 247, Mismatches: 16, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 151 0.61
49 96 0.39
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32296432 original size:40 final size:40
Alignment explanation
Indices: 32296358--32296459 Score: 138
Period size: 40 Copynumber: 2.6 Consensus size: 40
32296348 AACCCAAGTA
*
32296358 CCTTCGGGAT-TTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGG-TCTTAGCCCGGATATAGCAACTAGCACAAATG
32296397 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAG-CAACTAGCACAAATG
* *
32296437 CCTTCGGGACTTAGCTCGGATAT
1 CCTTCGGGTCTTAGCCCGGATAT
32296460 CATTCGAATA
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
38 1 0.02
39 12 0.21
40 43 0.75
41 1 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATG
Found at i:32304400 original size:40 final size:40
Alignment explanation
Indices: 32304326--32304507 Score: 305
Period size: 40 Copynumber: 4.6 Consensus size: 40
32304316 AACCCAAGTA
* * *
32304326 CCTTCAGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
32304365 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
32304405 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
32304445 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
32304485 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
32304508 CATTCGAACA
Statistics
Matches: 136, Mismatches: 5, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
39 11 0.08
40 124 0.91
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:32305612 original size:43 final size:43
Alignment explanation
Indices: 32305562--32305646 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
32305552 TTGTGATTCT
** *
32305562 GATATGTGTTTACAAGTAAGACC-CTGTCTGGGACAGTGGCATC
1 GATATGTGGCTACAAGTAAGACCAC-GTCTGGAACAGTGGCATC
* *
32305605 GATATGTGGCTACATGTAAGACCACGTCTGGAACATTGGCAT
1 GATATGTGGCTACAAGTAAGACCACGTCTGGAACAGTGGCAT
32305647 TGTAAGATTT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
43 35 0.97
44 1 0.03
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (43 bp):
GATATGTGGCTACAAGTAAGACCACGTCTGGAACAGTGGCATC
Found at i:32318637 original size:49 final size:48
Alignment explanation
Indices: 32318584--32318757 Score: 222
Period size: 49 Copynumber: 3.5 Consensus size: 48
32318574 CTAGTACGCA
* *
32318584 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATGCAGTACATG
1 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTAT-CAGTACACG
* * * ** *
32318633 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTACACTTAGTACTACACATGCGACC-AATTATCAG-TACACG
*
32318683 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTAT-CAGTACACG
*
32318732 TAGTGGCCTACACTTAGTACTACACA
1 TAGTAGCCTACACTTAGTACTACACA
32318758 CGTGACCTCA
Statistics
Matches: 109, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
49 68 0.62
50 41 0.38
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (48 bp):
TAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCAGTACACG
Found at i:32318755 original size:99 final size:99
Alignment explanation
Indices: 32318584--32318765 Score: 310
Period size: 99 Copynumber: 1.8 Consensus size: 99
32318574 CTAGTACGCA
* * * *
32318584 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATGCAGTACATGTAGTAGCCTGCACTTA
1 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAGTAGCCTACACTTA
32318649 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGTGACCTAACCATCTGATACACG
* *
32318683 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTGGCCTACACTTA
1 TAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAGTAGCCTACACTTA
32318748 GTACTACACACGTGACCT
66 GTACTACACACGTGACCT
32318766 CATAATAGAT
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
99 77 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTACACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAGTAGCCTACACTTA
GTACTACACACGTGACCTAACCATCTGATACACG
Found at i:32321497 original size:15 final size:15
Alignment explanation
Indices: 32321477--32321513 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
32321467 CAACAAGTTA
32321477 CAAGATAAAGAAATC
1 CAAGATAAAGAAATC
32321492 CAAGATAAAGAAATC
1 CAAGATAAAGAAATC
*
32321507 CATGATA
1 CAAGATA
32321514 CGAGAATCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.57, C:0.14, G:0.14, T:0.16
Consensus pattern (15 bp):
CAAGATAAAGAAATC
Found at i:32324717 original size:50 final size:49
Alignment explanation
Indices: 32324606--32324837 Score: 302
Period size: 49 Copynumber: 4.7 Consensus size: 49
32324596 CTAGTACGCA
* * *
32324606 TAGTAGCCTGCACGTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
** *
32324655 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCTGGTACACG
* * * * *
32324705 TAGTAGCTTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCTGGTACACG
* * * *
32324756 TAGTAGCCTGCACTTAGTACTACACATGCGACCAAGTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
32324805 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
32324838 TTACAATAGA
Statistics
Matches: 156, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 71 0.46
50 48 0.31
51 37 0.24
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
Found at i:32326909 original size:16 final size:16
Alignment explanation
Indices: 32326888--32326926 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
32326878 TTTTAAAGTT
*
32326888 TAATTAAGTTATATGA
1 TAATTAAGTTAAATGA
*
32326904 TAATTAAGTTAAATGT
1 TAATTAAGTTAAATGA
32326920 TAATTAA
1 TAATTAA
32326927 ACAAAAGATG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (16 bp):
TAATTAAGTTAAATGA
Found at i:32327735 original size:40 final size:40
Alignment explanation
Indices: 32327691--32327848 Score: 235
Period size: 40 Copynumber: 4.0 Consensus size: 40
32327681 ATTGTATGAC
*
32327691 TGCACATATGTGCCCTTGTTTGTACTTCGGTACCCCTGAT
1 TGCACATACGTGCCCTTGTTTGTACTTCGGTACCCCTGAT
*
32327731 TGCACATACATGCCCTTGTTTGTACTTCGGTACCCCTGAT
1 TGCACATACGTGCCCTTGTTTGTACTTCGGTACCCCTGAT
* * *
32327771 TGCAGATGCGTGCCCTTGTTTGTACTTCGATACCCCTGAT
1 TGCACATACGTGCCCTTGTTTGTACTTCGGTACCCCTGAT
* * * *
32327811 TGCACATATGTGCCCCTGTTTTTACTTTGGTACCCCTG
1 TGCACATACGTGCCCTTGTTTGTACTTCGGTACCCCTG
32327849 CCTATTTGTA
Statistics
Matches: 105, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 105 1.00
ACGTcount: A:0.15, C:0.28, G:0.20, T:0.37
Consensus pattern (40 bp):
TGCACATACGTGCCCTTGTTTGTACTTCGGTACCCCTGAT
Found at i:32327869 original size:64 final size:64
Alignment explanation
Indices: 32327789--32327912 Score: 212
Period size: 64 Copynumber: 1.9 Consensus size: 64
32327779 CGTGCCCTTG
* *
32327789 TTTGTACTTCGATACCCCTGATTGCACATATGTGCCCCTGTTTTTACTTTGGTACCCCTGCCTA
1 TTTGTACTTCGATACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTGCCTA
* *
32327853 TTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTATTTTGGTACCCCTG
1 TTTGTACTTCGATACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTG
32327913 ATTGTACTCA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.15, C:0.29, G:0.18, T:0.39
Consensus pattern (64 bp):
TTTGTACTTCGATACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTGCCTA
Found at i:32327908 original size:40 final size:40
Alignment explanation
Indices: 32327853--32327946 Score: 118
Period size: 40 Copynumber: 2.4 Consensus size: 40
32327843 CCCCTGCCTA
*
32327853 TTTGTACTTCGGTACCCCTGATTGCACAT-ACGTGCCCCTG
1 TTTGTACTTCGGTACCCCTGATTGCAC-TCACATGCCCCTG
* * *
32327893 TTTGTATTTTGGTACCCCTGATTGTACTCACATGCCCCTG
1 TTTGTACTTCGGTACCCCTGATTGCACTCACATGCCCCTG
* *
32327933 TTTATACTCCGGTA
1 TTTGTACTTCGGTA
32327947 ACTTTGAATC
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
39 1 0.02
40 44 0.98
ACGTcount: A:0.16, C:0.29, G:0.18, T:0.37
Consensus pattern (40 bp):
TTTGTACTTCGGTACCCCTGATTGCACTCACATGCCCCTG
Found at i:32327929 original size:104 final size:104
Alignment explanation
Indices: 32327749--32327940 Score: 278
Period size: 104 Copynumber: 1.8 Consensus size: 104
32327739 CATGCCCTTG
* * *
32327749 TTTGTACTTCGGTACCCCTGATTGCAGATGCGTGCCCTTGTTTGTACTTCGATACCCCTGATTGC
1 TTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCCTGATTGC
** *
32327814 ACATATGTGCCCCTGTTTTTACTTTGGTACCCCTGCCTA
66 ACATACATGCCCCTGTTTATACTTTGGTACCCCTGCCTA
* * * *
32327853 TTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTATTTTGGTACCCCTGATTGT
1 TTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCCTGATTGC
32327918 AC-TCACATGCCCCTGTTTATACT
66 ACAT-ACATGCCCCTGTTTATACT
32327941 CCGGTAACTT
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
103 1 0.01
104 76 0.99
ACGTcount: A:0.15, C:0.29, G:0.18, T:0.38
Consensus pattern (104 bp):
TTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCCTGATTGC
ACATACATGCCCCTGTTTATACTTTGGTACCCCTGCCTA
Found at i:32334223 original size:27 final size:27
Alignment explanation
Indices: 32334175--32334226 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
32334165 GTGAGGCTGC
*
32334175 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGATA
* * *
32334202 CAGATATTGTGGCTAGGCCACCAGA
1 CAGATATTGTGACGAAGCCACCAGA
32334227 ATAGATAGAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGACGAAGCCACCAGATA
Found at i:32334323 original size:27 final size:26
Alignment explanation
Indices: 32334275--32334326 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
32334265 ACGAGGCTGC
*
32334275 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
32334301 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
32334327 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:32338618 original size:17 final size:18
Alignment explanation
Indices: 32338586--32338619 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32338576 CACTCCTAAA
32338586 ATGATTTCGATCTTTCTC
1 ATGATTTCGATCTTTCTC
*
32338604 ATGATTTTG-TCTTTCT
1 ATGATTTCGATCTTTCT
32338620 GTATGCTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.15, C:0.18, G:0.12, T:0.56
Consensus pattern (18 bp):
ATGATTTCGATCTTTCTC
Found at i:32343490 original size:12 final size:13
Alignment explanation
Indices: 32343473--32343501 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
32343463 CTCATACATG
32343473 AATAAATAAA-GC
1 AATAAATAAATGC
32343485 AATAAATAAATGC
1 AATAAATAAATGC
32343498 AATA
1 AATA
32343502 GTTATAACCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:32345596 original size:16 final size:16
Alignment explanation
Indices: 32345571--32345606 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
32345561 GAGAAACCAT
*
32345571 TTGGATTGATTAAGGG
1 TTGGACTGATTAAGGG
32345587 TTGGACTGATTAAGGG
1 TTGGACTGATTAAGGG
32345603 TTGG
1 TTGG
32345607 TAGTATTTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.22, C:0.03, G:0.39, T:0.36
Consensus pattern (16 bp):
TTGGACTGATTAAGGG
Found at i:32352305 original size:40 final size:38
Alignment explanation
Indices: 32352212--32352305 Score: 118
Period size: 38 Copynumber: 2.4 Consensus size: 38
32352202 TAGTTAAAGT
* *
32352212 CTTTAATTATGTCATAATCTGAACATCATTAATATGAG
1 CTTTAATTATGTCATAATATGAACATCATTAATAAGAG
*
32352250 CTTTAATTATGTCATAATATGAACAT-ATTTAATAAGGG
1 CTTTAATTATGTCATAATATGAACATCA-TTAATAAGAG
*
32352288 TTTTTTAATTATGTCATA
1 --CTTTAATTATGTCATA
32352306 GTTTAGGACA
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
37 1 0.02
38 33 0.67
40 15 0.31
ACGTcount: A:0.36, C:0.10, G:0.11, T:0.44
Consensus pattern (38 bp):
CTTTAATTATGTCATAATATGAACATCATTAATAAGAG
Found at i:32352347 original size:39 final size:38
Alignment explanation
Indices: 32352290--32352372 Score: 103
Period size: 39 Copynumber: 2.1 Consensus size: 38
32352280 AATAAGGGTT
* *
32352290 TTTTAATTATGTCATAGTTTAGGACATCTTAAATATATG
1 TTTTAAATATGTCATAGTTTA-GACATCTTAAATACATG
* * *
32352329 TTTTAAATATGTCCTAGTTTAGACGTCTTTAATACATG
1 TTTTAAATATGTCATAGTTTAGACATCTTAAATACATG
32352367 TCTTTA
1 T-TTTA
32352373 GTTTAGACAA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
38 15 0.39
39 23 0.61
ACGTcount: A:0.30, C:0.11, G:0.12, T:0.47
Consensus pattern (38 bp):
TTTTAAATATGTCATAGTTTAGACATCTTAAATACATG
Found at i:32354711 original size:55 final size:54
Alignment explanation
Indices: 32354582--32354778 Score: 254
Period size: 54 Copynumber: 3.6 Consensus size: 54
32354572 TTGGTAAGAT
* *
32354582 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* * *
32354636 AAGGAAATCATGTAAGACCATGTCAAGGCATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGGC
* * * *
32354691 AAAGG-TCCCATGTAAGACCATACCAAGGCATGGCATTGGTGAGTTC-ATAAGGG
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* * *
32354744 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCA
32354779 ATGGTAAGTT
Statistics
Matches: 125, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
52 4 0.03
53 31 0.25
54 43 0.34
55 43 0.34
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
Found at i:32356145 original size:11 final size:10
Alignment explanation
Indices: 32356128--32356224 Score: 76
Period size: 10 Copynumber: 9.5 Consensus size: 10
32356118 AAAAATAGAA
32356128 ATAAAAATATTT
1 ATAAAAATA--T
32356140 ATAAAAATAT
1 ATAAAAATAT
32356150 ATAAAAATA-
1 ATAAAAATAT
32356159 ATATAAAA-AT
1 ATA-AAAATAT
32356169 ATAAAAATAT
1 ATAAAAATAT
32356179 AT-AAAATAT
1 ATAAAAATAT
* *
32356188 TTAGAATATAT
1 ATA-AAAATAT
32356199 ATAATAAA-AT
1 ATAA-AAATAT
* *
32356209 AGATATAATAT
1 ATA-AAAATAT
32356220 ATAAA
1 ATAAA
32356225 TAAATTGAAT
Statistics
Matches: 69, Mismatches: 8, Indels: 18
0.73 0.08 0.19
Matches are distributed among these distances:
9 16 0.23
10 29 0.42
11 15 0.22
12 9 0.13
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (10 bp):
ATAAAAATAT
Found at i:32356169 original size:8 final size:8
Alignment explanation
Indices: 32356139--32356187 Score: 52
Period size: 8 Copynumber: 6.4 Consensus size: 8
32356129 TAAAAATATT
32356139 TATAAAAA
1 TATAAAAA
32356147 TATATAAAA
1 TATA-AAAA
32356156 -AT---AA
1 TATAAAAA
32356160 TATAAAAA
1 TATAAAAA
32356168 TATAAAAA
1 TATAAAAA
32356176 TATATAAAA
1 TATA-AAAA
32356185 TAT
1 TAT
32356188 TTAGAATATA
Statistics
Matches: 35, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
4 2 0.06
5 2 0.06
8 20 0.57
9 11 0.31
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (8 bp):
TATAAAAA
Found at i:32356180 original size:18 final size:19
Alignment explanation
Indices: 32356128--32356224 Score: 81
Period size: 19 Copynumber: 4.8 Consensus size: 19
32356118 AAAAATAGAA
32356128 ATAAAAATATTTATAAAAATAT
1 ATAAAAATA--TAT-AAAATAT
32356150 ATAAAAATAATATAAAA-AT
1 ATAAAAAT-ATATAAAATAT
32356169 ATAAAAATATATAAAATAT
1 ATAAAAATATATAAAATAT
* *
32356188 TTAGAATATATATAATAAAATAG
1 ATA-AA-A-ATAT-ATAAAATAT
*
32356211 AT-ATAATATATAAA
1 ATAAAAATATATAAA
32356225 TAAATTGAAT
Statistics
Matches: 65, Mismatches: 4, Indels: 16
0.76 0.05 0.19
Matches are distributed among these distances:
18 13 0.20
19 18 0.28
20 7 0.11
21 5 0.08
22 12 0.18
23 10 0.15
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (19 bp):
ATAAAAATATATAAAATAT
Found at i:32356184 original size:9 final size:9
Alignment explanation
Indices: 32356139--32356224 Score: 67
Period size: 9 Copynumber: 9.9 Consensus size: 9
32356129 TAAAAATATT
32356139 TATA-AAAA
1 TATATAAAA
32356147 TATATAAAAA
1 TATAT-AAAA
32356157 TAATATAAAA
1 T-ATATAAAA
32356167 -ATATAAAAA
1 TATAT-AAAA
32356176 TATATAAAA
1 TATATAAAA
* *
32356185 TATTTAGAA
1 TATATAAAA
32356194 TATAT---A
1 TATATAAAA
32356200 TA-ATAAAA
1 TATATAAAA
* *
32356208 TAGATATAA
1 TATATAAAA
32356217 TATATAAA
1 TATATAAA
32356225 TAAATTGAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 17
0.73 0.07 0.20
Matches are distributed among these distances:
5 2 0.03
6 3 0.05
8 11 0.17
9 30 0.48
10 13 0.21
11 4 0.06
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (9 bp):
TATATAAAA
Found at i:32356209 original size:23 final size:23
Alignment explanation
Indices: 32356175--32356228 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
32356165 AAATATAAAA
**
32356175 ATAT-ATAAAATATTTAGAATAT
1 ATATAATAAAATAGATAGAATAT
*
32356197 ATATAATAAAATAGATATAATAT
1 ATATAATAAAATAGATAGAATAT
32356220 ATA-AATAAA
1 ATATAATAAA
32356229 TTGAATATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 10 0.36
23 18 0.64
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (23 bp):
ATATAATAAAATAGATAGAATAT
Found at i:32356236 original size:22 final size:22
Alignment explanation
Indices: 32356192--32356247 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 22
32356182 AAATATTTAG
32356192 AATATATATAATAAAATAGATAT
1 AATATATA-AATAAAATAGATAT
*
32356215 AATATATAAAT-AAATTGAATAT
1 AATATATAAATAAAATAG-ATAT
32356237 AATAT-TAAATA
1 AATATATAAATA
32356248 TATAAATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 10 0.33
22 12 0.40
23 8 0.27
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.36
Consensus pattern (22 bp):
AATATATAAATAAAATAGATAT
Found at i:32359345 original size:40 final size:40
Alignment explanation
Indices: 32359299--32359520 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
32359289 TATTCGAATG
* *
32359299 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGTTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
32359339 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
32359379 ATATCCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
32359419 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
32359459 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
* *
32359499 ATATTC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
32359521 TACTTGGGTT
Statistics
Matches: 168, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 14 0.08
40 151 0.90
41 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:32361497 original size:30 final size:30
Alignment explanation
Indices: 32361463--32361559 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
32361453 TAAACTAAAA
*
32361463 TGAGCTAAGTTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
* * * * * * *
32361493 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
* *
32361523 TGAGCCAAGGTTTAGCTCGAGAGCTAAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
32361552 ATGAGCTA
1 -TGAGCTA
32361560 GGAGTGAGCT
Statistics
Matches: 48, Mismatches: 18, Indels: 2
0.71 0.26 0.03
Matches are distributed among these distances:
29 1 0.02
30 47 0.98
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
Found at i:32363753 original size:12 final size:12
Alignment explanation
Indices: 32363738--32363768 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
32363728 TTCTTTTTGC
32363738 TTTTCAAAGGCT
1 TTTTCAAAGGCT
32363750 TTTTCAAAGGCT
1 TTTTCAAAGGCT
32363762 TTTTCAA
1 TTTTCAA
32363769 GTTCTCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:32363845 original size:6 final size:6
Alignment explanation
Indices: 32363829--32363878 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
32363819 TTTCTTTTTA
*
32363829 TTTCAT TTTCTT TTTCTT CTCTTGCTT TTTCTT TTTC-T TTTC-T TTTCTT
1 TTTCTT TTTCTT TTTCTT -T-TT-CTT TTTCTT TTTCTT TTTCTT TTTCTT
32363878 T
1 T
32363879 GTTTTCTCTT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
5 10 0.26
6 20 0.51
7 3 0.08
8 3 0.08
9 3 0.08
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.76
Consensus pattern (6 bp):
TTTCTT
Found at i:32363861 original size:37 final size:37
Alignment explanation
Indices: 32363818--32363888 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
32363808 CTTGCCTCTC
32363818 TTTTCTTTTT-ATTTCATTTTCTTT-TTCTTCTCTTGCT
1 TTTTCTTTTTCATTTC-TTTTCTTTGTT-TTCTCTTGCT
*
32363855 TTTTCTTTTTCTTTTCTTTTCTTTGTTTTCTCTT
1 TTTTCTTTTTCATTTCTTTTCTTTGTTTTCTCTT
32363889 TACAAGAATG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
37 25 0.81
38 6 0.19
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (37 bp):
TTTTCTTTTTCATTTCTTTTCTTTGTTTTCTCTTGCT
Found at i:32363889 original size:16 final size:16
Alignment explanation
Indices: 32363814--32363874 Score: 63
Period size: 16 Copynumber: 3.8 Consensus size: 16
32363804 GCCTCTTGCC
*
32363814 TCTCTTTTCTTTTTAT
1 TCTCTTTTCTTTTTCT
32363830 T-TCATTTTCTTTTTCT
1 TCTC-TTTTCTTTTTCT
*
32363846 TCTC-TTGCTTTTTCTT
1 TCTCTTTTCTTTTTC-T
*
32363862 TTTCTTTTCTTTT
1 TCTCTTTTCTTTT
32363875 CTTTGTTTTC
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
15 11 0.30
16 17 0.46
17 9 0.24
ACGTcount: A:0.03, C:0.20, G:0.02, T:0.75
Consensus pattern (16 bp):
TCTCTTTTCTTTTTCT
Found at i:32364835 original size:12 final size:13
Alignment explanation
Indices: 32364804--32364835 Score: 50
Period size: 11 Copynumber: 2.6 Consensus size: 13
32364794 TTTAACTCGA
32364804 TTTTTTTTGTCAC
1 TTTTTTTTGTCAC
32364817 TTTTTTTT-TC-C
1 TTTTTTTTGTCAC
32364828 TTTTTTTT
1 TTTTTTTT
32364836 CGATTTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 9 0.47
12 2 0.11
13 8 0.42
ACGTcount: A:0.03, C:0.12, G:0.03, T:0.81
Consensus pattern (13 bp):
TTTTTTTTGTCAC
Found at i:32364843 original size:12 final size:12
Alignment explanation
Indices: 32364800--32364859 Score: 56
Period size: 12 Copynumber: 5.1 Consensus size: 12
32364790 TTTTTTTAAC
32364800 TCGATTTTTTTT
1 TCGATTTTTTTT
32364812 GTC-ACTTTTTTTT
1 -TCGA-TTTTTTTT
*
32364825 TC--CTTTTTTT
1 TCGATTTTTTTT
32364835 TCGATTTTTTTT
1 TCGATTTTTTTT
32364847 T-GAATTTTTTTT
1 TCG-ATTTTTTTT
32364859 T
1 T
32364860 GAATTTCTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
10 9 0.22
11 1 0.02
12 21 0.51
13 10 0.24
ACGTcount: A:0.08, C:0.10, G:0.07, T:0.75
Consensus pattern (12 bp):
TCGATTTTTTTT
Found at i:32364860 original size:12 final size:12
Alignment explanation
Indices: 32364828--32364865 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
32364818 TTTTTTTTCC
*
32364828 TTTTTTTTCG-A
1 TTTTTTTTTGAA
32364839 TTTTTTTTTGAA
1 TTTTTTTTTGAA
32364851 TTTTTTTTTGAA
1 TTTTTTTTTGAA
32364863 TTT
1 TTT
32364866 CTTCTCCTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
11 9 0.36
12 16 0.64
ACGTcount: A:0.13, C:0.03, G:0.08, T:0.76
Consensus pattern (12 bp):
TTTTTTTTTGAA
Found at i:32364957 original size:12 final size:12
Alignment explanation
Indices: 32364940--32364987 Score: 69
Period size: 12 Copynumber: 3.8 Consensus size: 12
32364930 CCAACTCAAA
32364940 ATTTTTTTTTTG
1 ATTTTTTTTTTG
32364952 ATTTTTTTTTTG
1 ATTTTTTTTTTG
32364964 ACTTCTTTTTTTTTG
1 A--T-TTTTTTTTTG
32364979 ATTTTTTTT
1 ATTTTTTTT
32364988 CGTTATGAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
12 20 0.61
13 1 0.03
14 1 0.03
15 11 0.33
ACGTcount: A:0.08, C:0.04, G:0.06, T:0.81
Consensus pattern (12 bp):
ATTTTTTTTTTG
Found at i:32366628 original size:30 final size:30
Alignment explanation
Indices: 32366594--32366690 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
32366584 TAAACTAAAA
*
32366594 TGAGCTAAGTTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
* * * * * * *
32366624 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
* *
32366654 TGAGCCAAGGTTTAGCTCGAGAGCTAAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
32366683 ATGAGCTA
1 -TGAGCTA
32366691 GGAGTGAGCT
Statistics
Matches: 48, Mismatches: 18, Indels: 2
0.71 0.26 0.03
Matches are distributed among these distances:
29 1 0.02
30 47 0.98
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
Found at i:32372035 original size:47 final size:47
Alignment explanation
Indices: 32371984--32372319 Score: 424
Period size: 47 Copynumber: 7.4 Consensus size: 47
32371974 GATGTACAAG
* *
32371984 GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
32372031 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
32372078 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
32372125 GTGTGTATATGTGATAAGACCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * *
32372172 GTGTATACATGAGATAAGACCTAATGGCCAATGTGATGAATGTG-AA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * * * *
32372218 --G-----A---GATAAGACCTAATAGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
32372255 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
32372302 GAGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
32372320 TCCCGAAGGG
Statistics
Matches: 256, Mismatches: 22, Indels: 22
0.85 0.07 0.07
Matches are distributed among these distances:
36 29 0.11
37 1 0.00
39 2 0.01
44 2 0.01
46 2 0.01
47 220 0.86
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
Found at i:32372150 original size:94 final size:94
Alignment explanation
Indices: 32371984--32372319 Score: 469
Period size: 94 Copynumber: 3.7 Consensus size: 94
32371974 GATGTACAAG
*
32371984 GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAG
*
32372049 GCCTAATGGCCGATGTGATGAATGTGAAA
66 ACCTAATGGCCGATGTGATGAATGTGAAA
32372078 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAG
*
32372143 ACCTAATGGCCAATGTGATGAATGTGAAA
66 ACCTAATGGCCGATGTGATGAATGTGAAA
* * * *
32372172 GTGTATACATGAGATAAGACCTAATGGCCAATGTGATGAATGTG-AA----G---A---GATAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAG
* * *
32372226 ACCTAATAGCCGATGTGATGGATGTGAAG
66 ACCTAATGGCCGATGTGATGAATGTGAAA
* * * *
32372255 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGAGTATAAATGTGATAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAG
32372320 TCCCGAAGGG
Statistics
Matches: 214, Mismatches: 17, Indels: 22
0.85 0.07 0.09
Matches are distributed among these distances:
83 70 0.33
84 2 0.01
86 1 0.00
89 1 0.00
91 1 0.00
93 2 0.01
94 137 0.64
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (94 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAG
ACCTAATGGCCGATGTGATGAATGTGAAA
Found at i:32372224 original size:36 final size:36
Alignment explanation
Indices: 32372182--32372254 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
32372172 GTGTATACAT
*
32372182 GAGATAAGACCTAATGGCCAATGTGATGAATGTGAA
1 GAGATAAGACCTAATAGCCAATGTGATGAATGTGAA
* *
32372218 GAGATAAGACCTAATAGCCGATGTGATGGATGTGAA
1 GAGATAAGACCTAATAGCCAATGTGATGAATGTGAA
32372254 G
1 G
32372255 GTGTATATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.37, C:0.11, G:0.30, T:0.22
Consensus pattern (36 bp):
GAGATAAGACCTAATAGCCAATGTGATGAATGTGAA
Found at i:32372242 original size:83 final size:84
Alignment explanation
Indices: 32372137--32372309 Score: 249
Period size: 83 Copynumber: 2.1 Consensus size: 84
32372127 GTGTATATGT
* *
32372137 GATAAGACCTAATGGCCAATGTGATGAATGTGAAAGTGTATACATGAGATAAGACCTAATGGCCA
1 GATAAGACCTAATAGCCAATGTGATGAATGTGAAAGTGTATACATGAGATAAGACCGAATGGCCA
32372202 ATGTGATGAATGTG-AAGA
66 ATGTGATGAATGTGAAAGA
* * * * * *
32372220 GATAAGACCTAATAGCCGATGTGATGGATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCA
1 GATAAGACCTAATAGCCAATGTGATGAATGTGAAAGTGTATACATGAGATAAGACCGAATGGCCA
*
32372285 ATGTGATGGATGTGAAAGA
66 ATGTGATGAATGTGAAAGA
32372304 GTATAA
1 G-ATAA
32372310 ATGTGATAAG
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
83 70 0.89
84 5 0.06
85 4 0.05
ACGTcount: A:0.36, C:0.10, G:0.29, T:0.25
Consensus pattern (84 bp):
GATAAGACCTAATAGCCAATGTGATGAATGTGAAAGTGTATACATGAGATAAGACCGAATGGCCA
ATGTGATGAATGTGAAAGA
Found at i:32374234 original size:40 final size:40
Alignment explanation
Indices: 32374173--32374484 Score: 482
Period size: 40 Copynumber: 7.8 Consensus size: 40
32374163 CAGTATGTTA
32374173 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* * * *
32374213 TATTCGGGCTAAGTCCTGAAGAGCATTCGTGCTGCTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* * *
32374253 TATCCGGACTAGGTCCCGAAGAGCATTCGTGCTGTTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
*
32374293 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* * *
32374333 TATCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* *
32374373 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
*
32374413 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
*
32374453 TATCCGGGCTAAGCCCCGAAG-GCATTCGTGCT
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
32374485 TGGAAAAAAT
Statistics
Matches: 250, Mismatches: 22, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
39 11 0.04
40 239 0.96
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
Found at i:32378482 original size:47 final size:47
Alignment explanation
Indices: 32378423--32378946 Score: 696
Period size: 47 Copynumber: 11.4 Consensus size: 47
32378413 GATGTACAAG
* *
32378423 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGACCTAATGGCCAATGTGATGAATGTGAAA
* * * *
32378470 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGGGAAA
1 GTGTGTATATGTGATAAGACCTAATGGCCAATGTGATGAATGTGAAA
* *
32378517 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGACCTAATGGCCAATGTGATGAATGTGAAA
* * *
32378564 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGACCTAATGGCCAATGTGATGAATGTGAAA
*
32378611 GTGTGTATATGTGATAAAACCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGACCTAATGGCCAATGTGATGAATGTGAAA
32378658 GTGTGTATATGTGATAAGACCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGACCTAATGGCCAATGTGATGAATGTGAAA
** * *
32378705 ACGTGTACATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGACCTAATGGCCAATGTGATGAATGTGAAA
32378752 GTGTGTATATGTGATAAGACCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGACCTAATGGCCAATGTGATGAATGTGAAA
* * *
32378799 GTGTATACATGAGATAAGACCTAATGGCCAATGTGATGAATGTG-AA
1 GTGTGTATATGTGATAAGACCTAATGGCCAATGTGATGAATGTGAAA
* *
32378845 ----G---A---GATAAGACCTAATGGCCGATGTGATGGAAT-TGAAG
1 GTGTGTATATGTGATAAGACCTAATGGCCAATGTGAT-GAATGTGAAA
* * *
32378882 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT-AGATGTGAAA
1 GTGTGTATATGTGATAAGACCTAATGGCCAATGTGATGA-ATGTGAAA
* * *
32378929 GAGTATAAATGTGATAAG
1 GTGTGTATATGTGATAAG
32378947 TCCCGAAGGG
Statistics
Matches: 426, Mismatches: 37, Indels: 28
0.87 0.08 0.06
Matches are distributed among these distances:
36 26 0.06
37 5 0.01
39 1 0.00
44 1 0.00
45 1 0.00
46 4 0.01
47 388 0.91
ACGTcount: A:0.35, C:0.09, G:0.29, T:0.27
Consensus pattern (47 bp):
GTGTGTATATGTGATAAGACCTAATGGCCAATGTGATGAATGTGAAA
Found at i:32378851 original size:36 final size:36
Alignment explanation
Indices: 32378809--32378881 Score: 121
Period size: 36 Copynumber: 2.0 Consensus size: 36
32378799 GTGTATACAT
32378809 GAGATAAGACCTAATGGCCAATGTGAT-GAATGTGAA
1 GAGATAAGACCTAATGGCCAATGTGATGGAAT-TGAA
*
32378845 GAGATAAGACCTAATGGCCGATGTGATGGAATTGAA
1 GAGATAAGACCTAATGGCCAATGTGATGGAATTGAA
32378881 G
1 G
32378882 GTGTATATAT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 31 0.89
37 4 0.11
ACGTcount: A:0.37, C:0.11, G:0.30, T:0.22
Consensus pattern (36 bp):
GAGATAAGACCTAATGGCCAATGTGATGGAATTGAA
Found at i:32378862 original size:83 final size:84
Alignment explanation
Indices: 32378764--32378936 Score: 244
Period size: 83 Copynumber: 2.1 Consensus size: 84
32378754 GTGTATATGT
*
32378764 GATAAGACCTAATGGCCAATGTGAT-GAATGTGAAAGTGTATACATGAGATAAGACCTAATGGCC
1 GATAAGACCTAATGGCCAATGTGATGGAAT-TGAAAGTGTATACATGAGATAAGACCGAATGGCC
32378828 AATGTGAT-GAATGTG-AAGA
65 AATGTGATAG-ATGTGAAAGA
* * * * *
32378847 GATAAGACCTAATGGCCGATGTGATGGAATTGAAGGTGTATATATGTGATAAGGCCGAATGGCCA
1 GATAAGACCTAATGGCCAATGTGATGGAATTGAAAGTGTATACATGAGATAAGACCGAATGGCCA
32378912 ATGTGATAGATGTGAAAGA
66 ATGTGATAGATGTGAAAGA
32378931 GTATAA
1 G-ATAA
32378937 ATGTGATAAG
Statistics
Matches: 80, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
83 66 0.82
84 10 0.12
85 4 0.05
ACGTcount: A:0.37, C:0.10, G:0.28, T:0.25
Consensus pattern (84 bp):
GATAAGACCTAATGGCCAATGTGATGGAATTGAAAGTGTATACATGAGATAAGACCGAATGGCCA
ATGTGATAGATGTGAAAGA
Found at i:32385377 original size:40 final size:40
Alignment explanation
Indices: 32385322--32385503 Score: 296
Period size: 40 Copynumber: 4.6 Consensus size: 40
32385312 TATTCAAATG
32385322 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
32385362 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
32385402 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
32385442 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
32385482 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
32385504 TACTTGGGTT
Statistics
Matches: 133, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 14 0.11
40 116 0.87
41 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:32391333 original size:54 final size:54
Alignment explanation
Indices: 32391267--32391481 Score: 225
Period size: 54 Copynumber: 4.0 Consensus size: 54
32391257 GTAAGATAAG
* *
32391267 GATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGAAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGAAAA
* * ** *
32391321 GAAATCATGTAAGACCATGTGAAGACATGGCATTGATGAGTTACTATAAGGAAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGAAAA
* * * * * * * *
32391376 GGTCCCATGTATGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGGAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGAAAA
* * * * * *
32391429 GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCAAAAAGGAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGAAA
32391482 TGGTTCCCGA
Statistics
Matches: 133, Mismatches: 26, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
53 43 0.32
54 45 0.34
55 45 0.34
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (54 bp):
GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGAAAA
Found at i:32391393 original size:55 final size:54
Alignment explanation
Indices: 32391272--32391460 Score: 220
Period size: 55 Copynumber: 3.5 Consensus size: 54
32391262 ATAAGGATAT
* * ** *
32391272 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGAAAAGAAAT
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGAAAAGGTAC
** *
32391326 CATGTAAGACCATGTGAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGAAAAGGTAC
* * * *
32391381 CATGTATGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGG-GAAGGATAC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGAAAAGG-TAC
* *
32391434 CACGTAAGACCATGTCAAGACATGGCA
1 CATGTAAGACCATGCCAAGACATGGCA
32391461 ATGGTAAGTT
Statistics
Matches: 114, Mismatches: 19, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
52 4 0.04
53 31 0.27
54 34 0.30
55 45 0.39
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGAAAAGGTAC
Found at i:32392614 original size:21 final size:21
Alignment explanation
Indices: 32392588--32392630 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
32392578 GTGCAACAAG
*
32392588 GGAAACTTTAACTAATAAACT
1 GGAAACTTTAACGAATAAACT
32392609 GGAAACTTTAACGAATAAACT
1 GGAAACTTTAACGAATAAACT
32392630 G
1 G
32392631 TACTAATTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.47, C:0.14, G:0.14, T:0.26
Consensus pattern (21 bp):
GGAAACTTTAACGAATAAACT
Found at i:32407959 original size:40 final size:40
Alignment explanation
Indices: 32407882--32408102 Score: 279
Period size: 40 Copynumber: 5.5 Consensus size: 40
32407872 ACCCAAGTAT
* *
32407882 CTTCGGGAT-TTAG-CCGGATATA-ACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
32407921 CTTCGGGTCTTAGCCCTGATATAGTCACTAGAATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
32407961 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
32408001 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
32408041 CTTCGGATCTTAGTCCGGATATAGTCACTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
32408081 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
32408103 CATTCGAATA
Statistics
Matches: 157, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 12 0.08
40 142 0.90
41 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:32414979 original size:42 final size:41
Alignment explanation
Indices: 32414933--32415041 Score: 128
Period size: 42 Copynumber: 2.6 Consensus size: 41
32414923 ACAACGTGCC
* * * *
32414933 AGACCTTATCTGGGATATGGCATTGATATGAGACTTTGTGTA
1 AGACCATATCTGGGATATGGCATTGATACGAGA-TATATGTA
* **
32414975 AGACCATAGCTGGGATATTGGCATCAATACGAGATATATGTA
1 AGACCATATCTGGGATA-TGGCATTGATACGAGATATATGTA
*
32415017 AGACCATATGTGGGATATGGCATTG
1 AGACCATATCTGGGATATGGCATTG
32415042 GTACAGTACT
Statistics
Matches: 55, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
41 6 0.11
42 36 0.65
43 13 0.24
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30
Consensus pattern (41 bp):
AGACCATATCTGGGATATGGCATTGATACGAGATATATGTA
Found at i:32418151 original size:79 final size:81
Alignment explanation
Indices: 32418015--32418199 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
32418005 TTGAATGATG
* *
32418015 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
32418079 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
32418094 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
32418156 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
32418174 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32418200 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:32418213 original size:40 final size:40
Alignment explanation
Indices: 32418016--32418199 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
32418006 TGAATGATGT
* * * *
32418016 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
32418056 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
32418096 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
32418134 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32418175 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
32418200 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:32418221 original size:79 final size:79
Alignment explanation
Indices: 32418068--32418232 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
32418058 GGACTAAGAT
* * **
32418068 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
32418133 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
32418147 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
32418210 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
32418226 CCGAAGG
1 CCGAAGG
32418233 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:32421805 original size:37 final size:37
Alignment explanation
Indices: 32421746--32421854 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
32421736 AGCTCAGACG
* * *
32421746 AAATCTCCACTCGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
32421783 AAATCTCCACACGTAGTCATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
32421820 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
32421855 ATATATTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:32422131 original size:48 final size:48
Alignment explanation
Indices: 32422000--32422183 Score: 271
Period size: 48 Copynumber: 3.8 Consensus size: 48
32421990 GCACATCGCC
* *
32422000 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTC--A
* * *
32422050 TATATATTTCACATT-GACCATTCAGCTTGACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATGCATATCTCA
*
32422098 TACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATTTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCA
*
32422146 TACATTTTTCACATTAGCCATTCGGCTTTACCACATAT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATAT
32422184 ATGCATGTTC
Statistics
Matches: 122, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
48 80 0.66
49 2 0.02
50 40 0.33
ACGTcount: A:0.29, C:0.27, G:0.08, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCA
Found at i:32422189 original size:98 final size:98
Alignment explanation
Indices: 32422000--32422183 Score: 284
Period size: 98 Copynumber: 1.9 Consensus size: 98
32421990 GCACATCGCC
*
32422000 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATATTTCACATT
32422065 GACCATTCAGCTTGACCACATATGCATATCTCA
66 GACCATTCAGCTTGACCACATATGCATATCTCA
* * *
32422098 TACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATTTCTCATACAT-T-TTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATATTTCACATT
* *
32422161 -AGCCATTCGGCTTTACCACATAT
66 GA-CCATTCAGCTTGACCACATAT
32422184 ATGCATGTTC
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
95 1 0.01
96 28 0.35
97 1 0.01
98 49 0.62
ACGTcount: A:0.29, C:0.27, G:0.08, T:0.36
Consensus pattern (98 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATATTTCACATT
GACCATTCAGCTTGACCACATATGCATATCTCA
Found at i:32422233 original size:47 final size:47
Alignment explanation
Indices: 32422106--32422300 Score: 187
Period size: 47 Copynumber: 4.1 Consensus size: 47
32422096 CATACATATT
* * **
32422106 TCACATTAGCCATTCGGCTTTA-C-CACATATGCATTTCTCATACATTTT
1 TCACATTAGCCATTCGGCCTTATCACACATATGCATGT-TC--ACATTCA
* * * *
32422154 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTAGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* * ** *
32422201 CCACATTGGCCATTCGGCCTTATCACACATATGTGTGCTCACATTCA
1 TCACATTAGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* * * **
32422248 TCACATTGGCCATTCGGCCTTATCTCATATATGCACATTCACATTCA
1 TCACATTAGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
32422295 TCACAT
1 TCACAT
32422301 AAAATCCTAA
Statistics
Matches: 123, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
47 87 0.71
48 22 0.18
49 3 0.02
50 11 0.09
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.35
Consensus pattern (47 bp):
TCACATTAGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
Found at i:32428289 original size:51 final size:51
Alignment explanation
Indices: 32428213--32428317 Score: 147
Period size: 51 Copynumber: 2.1 Consensus size: 51
32428203 CCGATGAGTT
* **
32428213 AGAAATGATCCACAATGGGTTTCATGTGTCTATGTTGTGCCGTTATCGATC
1 AGAAAGGATCCACAATGGGTTTCATGTGTCTATGTTACGCCGTTATCGATC
** **
32428264 AGAAAGGATCCACAATTTGTTTCATGTGTCTATGTTACGTTGTTATCGATC
1 AGAAAGGATCCACAATGGGTTTCATGTGTCTATGTTACGCCGTTATCGATC
32428315 AGA
1 AGA
32428318 TCCTTCACAT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (51 bp):
AGAAAGGATCCACAATGGGTTTCATGTGTCTATGTTACGCCGTTATCGATC
Found at i:32429793 original size:42 final size:42
Alignment explanation
Indices: 32429746--32429907 Score: 220
Period size: 42 Copynumber: 3.9 Consensus size: 42
32429736 ATGTCATGAC
*
32429746 GAGACTACGTGTAAGACCATATCTGGGATATGGCATCAATAT
1 GAGACTACGTGTAAGACCATATCTGGGATATGGCATCGATAT
* *
32429788 GAGACTACGTGTAAGACCATATCTGGCATATGACATCGATAT
1 GAGACTACGTGTAAGACCATATCTGGGATATGGCATCGATAT
* * * *
32429830 GAGACTTCGTGTAAGACCATAGT-TGAGCTATTGGCATCGATAC
1 GAGACTACGTGTAAGACCATA-TCTGGGATA-TGGCATCGATAT
*
32429873 GAGA-TACATGTAAGACCATATCTGGGATATGGCAT
1 GAGACTACGTGTAAGACCATATCTGGGATATGGCAT
32429908 TGGTACGGTA
Statistics
Matches: 104, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
41 7 0.07
42 82 0.79
43 15 0.14
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (42 bp):
GAGACTACGTGTAAGACCATATCTGGGATATGGCATCGATAT
Found at i:32434688 original size:20 final size:20
Alignment explanation
Indices: 32434665--32434703 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
32434655 TAAACATGGT
32434665 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
32434685 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
32434704 TGTATTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:32434817 original size:23 final size:23
Alignment explanation
Indices: 32434754--32434829 Score: 107
Period size: 24 Copynumber: 3.2 Consensus size: 23
32434744 GAGGAAGTGA
*
32434754 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTT-TGCCCTAGTTATT
*
32434778 GAAAGGGCTTTTGCCCTAGTTATT
1 AAAAGGGC-TTTGCCCTAGTTATT
*
32434802 AAAAGGGCTTTGCCCTAGTTACT
1 AAAAGGGCTTTGCCCTAGTTATT
32434825 AAAAG
1 AAAAG
32434830 AAGCTAGGCC
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
23 19 0.40
24 26 0.55
25 2 0.04
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCTAGTTATT
Found at i:32453282 original size:40 final size:38
Alignment explanation
Indices: 32453237--32453341 Score: 102
Period size: 40 Copynumber: 2.6 Consensus size: 38
32453227 AAGTGACTAT
* *
32453237 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTATTAA
1 ATCCGG-CTAAG-TCCGAAGGCATTTGTGCGAGATATAAA
* * *
32453277 TTCCGGGTCAAGTCCCGAAGGCCTTTGTGCGAGATATAAA
1 ATCCGGCT-AAGT-CCGAAGGCATTTGTGCGAGATATAAA
*
32453317 ATCCGGGTTAAGTCCTGAAGGCATT
1 ATCC-GGCTAAGTCC-GAAGGCATT
32453342 GTATGAGTTA
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
39 4 0.08
40 46 0.87
41 3 0.06
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (38 bp):
ATCCGGCTAAGTCCGAAGGCATTTGTGCGAGATATAAA
Found at i:32458467 original size:65 final size:65
Alignment explanation
Indices: 32458363--32458492 Score: 251
Period size: 65 Copynumber: 2.0 Consensus size: 65
32458353 TCATTATTTC
32458363 ATGAATTAATAATCGTAAGCTTAAAGTACATACCTGTACCTGGAAACACAAAATTTACATACTTT
1 ATGAATTAATAATCGTAAGCTTAAAGTACATACCTGTACCTGGAAACACAAAATTTACATACTTT
*
32458428 ATGAATTAATAATCGTAAGCTTAAAGTACATACTTGTACCTGGAAACACAAAATTTACATACTTT
1 ATGAATTAATAATCGTAAGCTTAAAGTACATACCTGTACCTGGAAACACAAAATTTACATACTTT
32458493 TTCATACCCT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.32
Consensus pattern (65 bp):
ATGAATTAATAATCGTAAGCTTAAAGTACATACCTGTACCTGGAAACACAAAATTTACATACTTT
Found at i:32459448 original size:20 final size:21
Alignment explanation
Indices: 32459423--32459461 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
32459413 ATCCAAATTA
*
32459423 TCTATCCGCTA-CACACCAGC
1 TCTATCCCCTATCACACCAGC
32459443 TCTATCCCCTATCACACCA
1 TCTATCCCCTATCACACCA
32459462 TGTGGGGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.26, C:0.46, G:0.05, T:0.23
Consensus pattern (21 bp):
TCTATCCCCTATCACACCAGC
Found at i:32460048 original size:28 final size:28
Alignment explanation
Indices: 32460016--32460130 Score: 142
Period size: 29 Copynumber: 4.0 Consensus size: 28
32460006 TACCTATATC
* *
32460016 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
32460044 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCC-AATCACAT-TCATA
* *
32460073 TGGCCCATTAGGCCTAAATCACATTTATA
1 TGGCCCATTAGGCC-CAATCACATTCATA
*
32460102 TGGCCCATTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
32460130 T
1 T
32460131 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
28 27 0.36
29 47 0.63
30 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:32460107 original size:58 final size:57
Alignment explanation
Indices: 32460007--32460117 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 57
32459997 AATTTCATAT
* * *
32460007 ACCTATATCTGGCCCATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTATATATGGCCCATTAAGCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
* * *
32460064 ACCTGTATATGGCCCATTAGGCCTAAATCACATTTATATGGCCCATTAGGCCCA
1 ACCTATATATGGCCCATTAAGCC-AAATCACATTCATATGGCCCATTAGGCCCA
32460118 GTCACATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 20 0.43
58 27 0.57
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (57 bp):
ACCTATATATGGCCCATTAAGCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:32460362 original size:16 final size:16
Alignment explanation
Indices: 32460341--32460377 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
32460331 GTAACCAAAC
*
32460341 TTTCGGCTTTTTAGCA
1 TTTCGGCTTTTCAGCA
*
32460357 TTTCGGCTTTTCAGCT
1 TTTCGGCTTTTCAGCA
32460373 TTTCG
1 TTTCG
32460378 ATTTTTCGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.08, C:0.22, G:0.19, T:0.51
Consensus pattern (16 bp):
TTTCGGCTTTTCAGCA
Found at i:32464552 original size:28 final size:29
Alignment explanation
Indices: 32464520--32464634 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
32464510 TACCTGTATT
* *
32464520 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
32464548 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
* *
32464577 TGGCCCATTAGGCCCAAATCACATTAAGA
1 TGGCCCATTAGGCCCAAATCACATTCATA
** *
32464606 TGGCCTGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
32464634 T
1 T
32464635 TCATGCTCAC
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 26 0.35
29 47 0.64
30 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.26
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:32464577 original size:29 final size:29
Alignment explanation
Indices: 32464511--32464598 Score: 117
Period size: 29 Copynumber: 3.1 Consensus size: 29
32464501 AATTTCACAT
* *
32464511 ACCTGTATTTGGCCCATTAAGCCC-AATC
1 ACCTGTATATGGCCCATTAGGCCCAAATC
**
32464539 ATAT-TCATATGGCCCATTAGGCCCAAATC
1 ACCTGT-ATATGGCCCATTAGGCCCAAATC
32464568 ACCTGTATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAGGCCCAAATC
32464597 AC
1 AC
32464599 ATTAAGATGG
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
27 1 0.02
28 18 0.35
29 31 0.61
30 1 0.02
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (29 bp):
ACCTGTATATGGCCCATTAGGCCCAAATC
Found at i:32464581 original size:57 final size:58
Alignment explanation
Indices: 32464511--32464621 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 58
32464501 AATTTCACAT
* * * *
32464511 ACCTGTATTTGGCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTAAGATGGCCCATTAGGCCCAAATC
* **
32464568 ACCTGTATATGGCCCATTAGGCCCAAATCACATTAAGATGGCCTGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTAAGATGGCCCATTAGGCCCA
32464622 GTCACATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 22 0.48
58 24 0.52
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTAAGATGGCCCATTAGGCCCAAATC
Found at i:32469110 original size:28 final size:28
Alignment explanation
Indices: 32469078--32469163 Score: 109
Period size: 28 Copynumber: 3.0 Consensus size: 28
32469068 TACCTGTATC
* *
32469078 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
32469106 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* * *
32469135 TGGCCCGTTAGGCCCAGTCCCATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
32469163 T
1 T
32469164 TCATGCTCAC
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
28 25 0.50
29 25 0.50
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:32469415 original size:16 final size:16
Alignment explanation
Indices: 32469373--32469408 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
32469363 GTAGCCAAAC
32469373 TTTCAGCTTTTCGACA
1 TTTCAGCTTTTCGACA
*
32469389 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGACA
32469405 TTTC
1 TTTC
32469409 GACTTTTGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.14, C:0.25, G:0.14, T:0.47
Consensus pattern (16 bp):
TTTCAGCTTTTCGACA
Found at i:32478369 original size:17 final size:18
Alignment explanation
Indices: 32478343--32478376 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
32478333 TTTATGTTTA
32478343 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
32478360 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
32478377 ATATTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:32479001 original size:17 final size:17
Alignment explanation
Indices: 32478965--32479002 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
32478955 CCTAAATTTT
* *
32478965 AATTATTTAATTTTTCA
1 AATTATTTAATTATTAA
32478982 AATTATTTAATTATTAA
1 AATTATTTAATTATTAA
32478999 AATT
1 AATT
32479003 TTATATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (17 bp):
AATTATTTAATTATTAA
Found at i:32485451 original size:19 final size:20
Alignment explanation
Indices: 32485421--32485464 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
32485411 AAGGGCATGG
32485421 GCGTGCCCCAAGTCACACGA
1 GCGTGCCCCAAGTCACACGA
*
32485441 GCGTG-CCCAAGTCTCACGA
1 GCGTGCCCCAAGTCACACGA
32485460 GCGTG
1 GCGTG
32485465 TGAGTCCACA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 18 0.78
20 5 0.22
ACGTcount: A:0.20, C:0.36, G:0.30, T:0.14
Consensus pattern (20 bp):
GCGTGCCCCAAGTCACACGA
Found at i:32497296 original size:20 final size:20
Alignment explanation
Indices: 32497271--32497315 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
32497261 AAGGGCATGG
32497271 GCGTGCCCCAAGTCACACGA
1 GCGTGCCCCAAGTCACACGA
*
32497291 GCGTGCCCCAAGTCTCACGA
1 GCGTGCCCCAAGTCACACGA
32497311 GCGTG
1 GCGTG
32497316 TGAGTCCACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.20, C:0.38, G:0.29, T:0.13
Consensus pattern (20 bp):
GCGTGCCCCAAGTCACACGA
Found at i:32515399 original size:50 final size:50
Alignment explanation
Indices: 32515342--32515441 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
32515332 TTGCATTTAT
*
32515342 TATTGACATGAAATATCTTAGAAATGCATATTTGATGATAACGTGTGAAA
1 TATTGACATGAAATATCTTAGAAATGCATATTTGACGATAACGTGTGAAA
32515392 TATTGACATGAAATATCTTAGAAATGCATATTTGACGATAACGTGTGAAA
1 TATTGACATGAAATATCTTAGAAATGCATATTTGACGATAACGTGTGAAA
32515442 AATGTCTCGG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.40, C:0.09, G:0.18, T:0.33
Consensus pattern (50 bp):
TATTGACATGAAATATCTTAGAAATGCATATTTGACGATAACGTGTGAAA
Found at i:32516330 original size:27 final size:27
Alignment explanation
Indices: 32516300--32516353 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
32516290 TGATTTGCCA
32516300 AATGAAGGCATGTAAAAATAAGTTTAT
1 AATGAAGGCATGTAAAAATAAGTTTAT
32516327 AATGAAGGCATGTAAAAATAAGTTTAT
1 AATGAAGGCATGTAAAAATAAGTTTAT
32516354 CTCTTTGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.48, C:0.04, G:0.19, T:0.30
Consensus pattern (27 bp):
AATGAAGGCATGTAAAAATAAGTTTAT
Found at i:32527095 original size:25 final size:25
Alignment explanation
Indices: 32527067--32527122 Score: 58
Period size: 27 Copynumber: 2.2 Consensus size: 25
32527057 ATATACATCA
* *
32527067 CATAGGGGCAAAATAGTCATCTTAC
1 CATAAGGGAAAAATAGTCATCTTAC
* *
32527092 CATATAAGGGAAAAATAGTCATTTTAT
1 C--ATAAGGGAAAAATAGTCATCTTAC
32527119 CATA
1 CATA
32527123 TATAGGGGGT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
25 4 0.16
27 21 0.84
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (25 bp):
CATAAGGGAAAAATAGTCATCTTAC
Found at i:32527106 original size:27 final size:28
Alignment explanation
Indices: 32527076--32527129 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
32527066 ACATAGGGGC
32527076 AAAATAGTCATCTTACCATATA-AGGGA
1 AAAATAGTCATCTTACCATATATAGGGA
* *
32527103 AAAATAGTCATTTTATCATATATAGGG
1 AAAATAGTCATCTTACCATATATAGGG
32527130 GGTCTAGGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 20 0.83
28 4 0.17
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.31
Consensus pattern (28 bp):
AAAATAGTCATCTTACCATATATAGGGA
Found at i:32541896 original size:27 final size:27
Alignment explanation
Indices: 32541849--32541912 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
32541839 AAATATTCTC
32541849 TAAATTAAT-AAATATTAATTTATCGA
1 TAAATTAATAAAATATTAATTTATCGA
*
32541875 TAAATTAATAAAATATTCATTTATCGA
1 TAAATTAATAAAATATTAATTTATCGA
*
32541902 TAAACTAATAA
1 TAAATTAATAA
32541913 TCTCGATAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 9 0.26
27 26 0.74
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (27 bp):
TAAATTAATAAAATATTAATTTATCGA
Found at i:32541920 original size:17 final size:17
Alignment explanation
Indices: 32541898--32541930 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
32541888 TATTCATTTA
*
32541898 TCGATAAACTAATAATC
1 TCGATAAAATAATAATC
32541915 TCGATAAAATAATAAT
1 TCGATAAAATAATAAT
32541931 TTTTTCGGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.12, G:0.06, T:0.30
Consensus pattern (17 bp):
TCGATAAAATAATAATC
Found at i:32542561 original size:39 final size:41
Alignment explanation
Indices: 32542488--32542568 Score: 114
Period size: 40 Copynumber: 2.0 Consensus size: 41
32542478 CAGTATCAAG
*
32542488 GAGCACCAATGTGCTAAGCAGGGCACAAATGTGCAT-ACAA
1 GAGCACCAAAGTGCTAAGCAGGGCACAAATGTGCATAACAA
*
32542528 GAGCACCAAAGTGC-AAGCAGGGCACTAGA-GTGCATAACAA
1 GAGCACCAAAGTGCTAAGCAGGGCAC-AAATGTGCATAACAA
32542568 G
1 G
32542569 GAACACATGT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
39 17 0.46
40 20 0.54
ACGTcount: A:0.38, C:0.22, G:0.27, T:0.12
Consensus pattern (41 bp):
GAGCACCAAAGTGCTAAGCAGGGCACAAATGTGCATAACAA
Found at i:32542581 original size:39 final size:39
Alignment explanation
Indices: 32542496--32542621 Score: 91
Period size: 39 Copynumber: 3.2 Consensus size: 39
32542486 AGGAGCACCA
*
32542496 ATGTGCTAAGCAGGGCAC-AAATGTGCAT-ACAA-GAGCACC
1 ATGTGC-AAGCAGGGCACTAAA-GTGCATAACAAGGAACA-C
* *
32542535 AAAGTGCAAGCAGGGCACTAGAGTGCATAACAAGGAACAC
1 -ATGTGCAAGCAGGGCACTAAAGTGCATAACAAGGAACAC
* * * * *
32542575 ATGTGCAATCAAGGGCA-TCATAGTGTA-AACAAGGCACAG
1 ATGTGCAAGC-AGGGCACT-AAAGTGCATAACAAGGAACAC
32542614 ATGTGCAA
1 ATGTGCAA
32542622 TCAGAAGCAA
Statistics
Matches: 72, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
39 44 0.61
40 24 0.33
41 4 0.06
ACGTcount: A:0.39, C:0.20, G:0.26, T:0.15
Consensus pattern (39 bp):
ATGTGCAAGCAGGGCACTAAAGTGCATAACAAGGAACAC
Found at i:32543293 original size:41 final size:41
Alignment explanation
Indices: 32543227--32543304 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
32543217 CCACAGGGGT
* *
32543227 TTCACACGGCCTGGAACACGCCCGTGTCTCAGGCCCGTATCC
1 TTCACACCGCCAGGAACACGCCCGTGTCTCA-GCCCGTATCC
* *
32543269 TTCACACCGCCAGG-ACATGCCCGTGTCTTAGCCCGT
1 TTCACACCGCCAGGAACACGCCCGTGTCTCAGCCCGT
32543305 GTGCAAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 6 0.19
41 14 0.44
42 12 0.38
ACGTcount: A:0.17, C:0.40, G:0.23, T:0.21
Consensus pattern (41 bp):
TTCACACCGCCAGGAACACGCCCGTGTCTCAGCCCGTATCC
Found at i:32548192 original size:38 final size:39
Alignment explanation
Indices: 32548140--32548245 Score: 142
Period size: 38 Copynumber: 2.7 Consensus size: 39
32548130 CGGGACTACC
*
32548140 ATAACTCGCACAAATGCCTTCGGACTTAGCCCG-GATTA
1 ATAACTCGCACAAATGCCTTCGGACTTAGCCCGAAATTA
*
32548178 GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTA
1 ATAACTCGCACAAATGCCTTC-GGACTTAGCCCGAAATTA
* * * *
32548218 ATCACTAGCACAAATGTCTTGGGACTTA
1 ATAACTCGCACAAATGCCTTCGGACTTA
32548246 ACCCCTTAGC
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
38 20 0.34
39 19 0.32
40 20 0.34
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (39 bp):
ATAACTCGCACAAATGCCTTCGGACTTAGCCCGAAATTA
Found at i:32548242 original size:39 final size:38
Alignment explanation
Indices: 32548140--32548245 Score: 131
Period size: 39 Copynumber: 2.7 Consensus size: 38
32548130 CGGGACTACC
* * *
32548140 ATAACTCGCACAAATGCCTTCGGACTTAGCCCGGATTA
1 ATAACTAGCACAAATGCCTTGGGACTTAGCCCGAATTA
* *
32548178 GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTA
1 ATAACTAGCACAAATGCCTT-GGGACTTAGCCCG-AATTA
* *
32548218 ATCACTAGCACAAATGTCTTGGGACTTA
1 ATAACTAGCACAAATGCCTTGGGACTTA
32548246 ACCCCTTAGC
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
38 19 0.32
39 20 0.34
40 20 0.34
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (38 bp):
ATAACTAGCACAAATGCCTTGGGACTTAGCCCGAATTA
Found at i:32565258 original size:40 final size:40
Alignment explanation
Indices: 32565224--32565369 Score: 197
Period size: 40 Copynumber: 3.6 Consensus size: 40
32565214 GGATATGGTC
*
32565224 ACTAGCACAAATGTCTTCGAGACTTAGCCCGG-ATATAGTA
1 ACTAGCACAAATGTCTTCGGGACTTAGCCCGGAAT-TAGTA
* *
32565264 ACTCGCACAAAT-TCCTTCGGGACTTAGCCTGGAATTAGTA
1 ACTAGCACAAATGT-CTTCGGGACTTAGCCCGGAATTAGTA
* * * *
32565304 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAATC
1 ACTAGCACAAATGTCTTCGGGACTTAGCCCGGAATTAGTA
32565344 ACTAGCACAAATGTCTTCGGGACTTA
1 ACTAGCACAAATGTCTTCGGGACTTA
32565370 ACCCCGTTAG
Statistics
Matches: 94, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
39 1 0.01
40 91 0.97
41 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (40 bp):
ACTAGCACAAATGTCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:32565312 original size:80 final size:80
Alignment explanation
Indices: 32565159--32565369 Score: 243
Period size: 80 Copynumber: 2.7 Consensus size: 80
32565149 AACCCAAGTA
* ** * * *
32565159 TCTTCGGGATTTAG-CCGGATATAATCACTCGCAC-AAGGCCGTCGGGTCTTAGCCTGGATATGG
1 TCTTCGGGACTTAGCCCGGATATAATCACTCGCACAAATTCCTTCGGGACTTAGCCTGGATATAG
*
32565222 TCACTAGCACAAATG
66 TAACTAGCACAAATG
* * *
32565237 TCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATTCCTTCGGGACTTAGCCTGGA-ATTA
1 TCTTCGGGACTTAGCCCGGATATAATCACTCGCACAAATTCCTTCGGGACTTAGCCTGGATA-TA
*
32565301 GTAACTCGCACAAATG
65 GTAACTAGCACAAATG
* *
32565317 CCTTCGGGACTTAGCCCGGA-ATTAATCACTAGCACAAATGT-CTTCGGGACTTA
1 TCTTCGGGACTTAGCCCGGATA-TAATCACTCGCACAAAT-TCCTTCGGGACTTA
32565370 ACCCCGTTAG
Statistics
Matches: 112, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
78 12 0.11
79 20 0.18
80 79 0.71
81 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (80 bp):
TCTTCGGGACTTAGCCCGGATATAATCACTCGCACAAATTCCTTCGGGACTTAGCCTGGATATAG
TAACTAGCACAAATG
Found at i:32573307 original size:39 final size:40
Alignment explanation
Indices: 32573239--32573444 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 40
32573229 AATTATCTTT
* ** * *
32573239 GGGATTTAG-CCGGATATAACCACTCGCAC-AAGGCCGTC
1 GGGACTTAGCCCGGATATAGTCACTCGCACAAATGCCTTC
* * *
32573277 GGGTCTTAGCCCGGATATGGTCACTAGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTCGCACAAATGCCTTC
*
32573317 GGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTCGCACAAATGCCTTC
* * * *
32573357 GGGACTTAGCTCGGA-ATTAGTAACTCGCACAAATTCCTTT
1 GGGACTTAGCCCGGATA-TAGTCACTCGCACAAATGCCTTC
* * *
32573397 GGGACTTAGCCCGGA-ATTAATCACTAGCACAAATGTCTTC
1 GGGACTTAGCCCGGATA-TAGTCACTCGCACAAATGCCTTC
32573437 GGGACTTA
1 GGGACTTA
32573445 ACCCCGTTAG
Statistics
Matches: 143, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
38 7 0.05
39 17 0.12
40 119 0.83
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
GGGACTTAGCCCGGATATAGTCACTCGCACAAATGCCTTC
Found at i:32576413 original size:84 final size:85
Alignment explanation
Indices: 32576231--32576414 Score: 203
Period size: 84 Copynumber: 2.2 Consensus size: 85
32576221 GGGAATCACA
* * **** *
32576231 TACACATAGAA-TCATACCAATGTCATATCCCAGATATGGTCTTACATGGGATCTCATATCGATG
1 TACACATA-AACTCATACCAATGCCATATCCCAGACATGGTCTTACACAAAATCTCATAACGATG
**
32576295 CCAATAGCCCAGCTATGGTCT
65 CCAATAGCCCAAATATGGTCT
** * * *
32576316 TACAC-TATTCTCATATCAATGCCATGTCCCAGACATGGTCTTACACAAAATCTCATAACGATGT
1 TACACATAAACTCATACCAATGCCATATCCCAGACATGGTCTTACACAAAATCTCATAACGATGC
*
32576380 C-ATATCCCAAATATGGTCT
66 CAATAGCCCAAATATGGTCT
32576399 TACACATAAACTCATA
1 TACACATAAACTCATA
32576415 ACCCTAATGT
Statistics
Matches: 80, Mismatches: 17, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
83 20 0.25
84 55 0.69
85 5 0.06
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (85 bp):
TACACATAAACTCATACCAATGCCATATCCCAGACATGGTCTTACACAAAATCTCATAACGATGC
CAATAGCCCAAATATGGTCT
Found at i:32576415 original size:42 final size:42
Alignment explanation
Indices: 32576231--32576416 Score: 153
Period size: 42 Copynumber: 4.4 Consensus size: 42
32576221 GGGAATCACA
* *
32576231 TACACATAGAA-TCATACCAATGTCATATCCCAGATATGGTCT
1 TACACATA-AACTCATAACAATGCCATATCCCAGATATGGTCT
**** * * * * *
32576273 TACATGGGATCTCATATCGATGCCAATAGCCCAGCTATGGTCT
1 TACACATAAACTCATAACAATGCC-ATATCCCAGATATGGTCT
** * * *
32576316 TACAC-TATTCTCATATCAATGCCATGTCCCAGACATGGTCT
1 TACACATAAACTCATAACAATGCCATATCCCAGATATGGTCT
* * *
32576357 TACACA-AAATCTCATAACGATGTCATATCCCAAATATGGTCT
1 TACACATAAA-CTCATAACAATGCCATATCCCAGATATGGTCT
32576399 TACACATAAACTCATAAC
1 TACACATAAACTCATAAC
32576417 CCTAATGTCA
Statistics
Matches: 112, Mismatches: 27, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
41 21 0.19
42 68 0.61
43 23 0.21
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.28
Consensus pattern (42 bp):
TACACATAAACTCATAACAATGCCATATCCCAGATATGGTCT
Found at i:32591219 original size:6 final size:6
Alignment explanation
Indices: 32591208--32591314 Score: 67
Period size: 6 Copynumber: 17.3 Consensus size: 6
32591198 TAGAACTAGC
* * *
32591208 ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA ATCAGA ATCAGT
1 ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA
* * * * *
32591257 ATCAGGTA A-CAAA ATCAAA ATCAGA ATTAGT ATCATGTA A-CAGA ATCAAA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
32591307 ATCAGA AT
1 ATCAGA AT
32591315 GTGAATGCAA
Statistics
Matches: 78, Mismatches: 14, Indels: 18
0.71 0.13 0.16
Matches are distributed among these distances:
5 5 0.06
6 62 0.79
7 8 0.10
8 3 0.04
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:32591245 original size:31 final size:31
Alignment explanation
Indices: 32591208--32591314 Score: 142
Period size: 31 Copynumber: 3.5 Consensus size: 31
32591198 TAGAACTAGC
* * * *
32591208 ATCAGAATCAGAATCAGAATTAGGTGACAGA
1 ATCAAAATCAGAATCAGTATCAGGTAACAGA
* *
32591239 ATCAGAATCAGAATCAGTATCAGGTAACAAA
1 ATCAAAATCAGAATCAGTATCAGGTAACAGA
* *
32591270 ATCAAAATCAGAATTAGTATCATGTAACAGA
1 ATCAAAATCAGAATCAGTATCAGGTAACAGA
32591301 ATCAAAATCAGAAT
1 ATCAAAATCAGAAT
32591315 GTGAATGCAA
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 68 1.00
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.21
Consensus pattern (31 bp):
ATCAAAATCAGAATCAGTATCAGGTAACAGA
Found at i:32591753 original size:27 final size:27
Alignment explanation
Indices: 32591723--32591947 Score: 206
Period size: 27 Copynumber: 8.3 Consensus size: 27
32591713 AAGGTAAAAT
* *
32591723 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
32591750 GGTAATTCTACCTTAC-AGGAGTATTTT
1 GGTAATTTTACCCTACAAGG-GTATTTC
* * * * *
32591777 AGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
32591804 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * * *
32591831 GGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
32591858 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
**
32591885 AAT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
32591912 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
32591939 GATAATTTT
1 GGTAATTTT
32591948 GTAAATCGAG
Statistics
Matches: 165, Mismatches: 27, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
26 9 0.05
27 147 0.89
28 9 0.05
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:32591782 original size:54 final size:54
Alignment explanation
Indices: 32591724--32591938 Score: 252
Period size: 54 Copynumber: 4.0 Consensus size: 54
32591714 AGGTAAAATG
* * * * *
32591724 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCTTAC-AGGAGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGG-GTATTTCA
* * * * *
32591778 GTAATTCTACCCTATAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
* * ** *
32591832 GTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
* * *
32591886 ATATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
32591939 GATAATTTTG
Statistics
Matches: 138, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
54 135 0.98
55 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
Found at i:32591857 original size:81 final size:81
Alignment explanation
Indices: 32591722--32591937 Score: 317
Period size: 81 Copynumber: 2.7 Consensus size: 81
32591712 AAAGGTAAAA
* * * *
32591722 TGGTAATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCTTACAGGAGTATTTTAGTAATTCT
1 TGGT-ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCT
*
32591786 ACCCTATAGGGGTATTT
65 ACCCTACAGGGGTATTT
*
32591803 TGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTA
1 TGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTA
32591868 CCCTACAGGGGTATTT
66 CCCTACAGGGGTATTT
*** * *
32591884 CAATATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTT
1 TGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
32591938 CGATAATTTT
Statistics
Matches: 122, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
80 4 0.03
81 118 0.97
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (81 bp):
TGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTA
CCCTACAGGGGTATTT
Found at i:32592025 original size:27 final size:26
Alignment explanation
Indices: 32591990--32592432 Score: 343
Period size: 27 Copynumber: 16.4 Consensus size: 26
32591980 TTAGGGGCAC
32591990 TTTGGTAATTTTACAAGTC-GAGGGTAT
1 TTTGGTAATTTTACAA-TCAG-GGGTAT
** *
32592017 TTTAATAATTTTACAGGTC-GAGGGTAT
1 TTTGGTAATTTTACA-ATCAG-GGGTAT
* *
32592044 TTTAGTAATTTCACAAATCAGGGGTAT
1 TTTGGTAATTTTAC-AATCAGGGGTAT
*
32592071 TTTGGTAATTTTACAAACTAGGGGTAT
1 TTTGGTAATTTTACAATC-AGGGGTAT
* *
32592098 TTTGATAATTTTACGAACCAGGGGTAT
1 TTTGGTAATTTTAC-AATCAGGGGTAT
32592125 TTTGGTAATTTTACAAATCAGGGGTAT
1 TTTGGTAATTTTAC-AATCAGGGGTAT
* * * *
32592152 CTTGGTAATTTTATAAACAAAGGGTAT
1 TTTGGTAATTTTACAATC-AGGGGTAT
* *
32592179 TTTAGTAATTTTACAAACCAGGGGTAT
1 TTTGGTAATTTTAC-AATCAGGGGTAT
* *
32592206 TTTGGTAATTTTGTA-AACCAAGGGTAT
1 TTTGGTAA-TTT-TACAATCAGGGGTAT
* *
32592233 TTTGGTAATTATACAAACCAGGGGTAT
1 TTTGGTAATTTTAC-AATCAGGGGTAT
* * * *
32592260 TTTGGTGATTTTATAAACCAAGGGTAT
1 TTTGGTAATTTTA-CAATCAGGGGTAT
* * *
32592287 TCTAGTAATTTTACAAACCAGGGGTAT
1 TTTGGTAATTTTAC-AATCAGGGGTAT
** * *
32592314 TTTGGTAATTTTGTAAACTAAGGGTAT
1 TTTGGTAATTTTACAATC-AGGGGTAT
* * *
32592341 TTTTGTAATTTTATAAACCAGGGGTAT
1 TTTGGTAATTTTA-CAATCAGGGGTAT
* * * * *
32592368 TTTTGTGATTTTATAAACCAAGGGTAT
1 TTTGGTAATTTTA-CAATCAGGGGTAT
* *
32592395 TTTAGTAATTTTACAAACCAGGGGTAT
1 TTTGGTAATTTTAC-AATCAGGGGTAT
32592422 TTTGGTAATTT
1 TTTGGTAATTT
32592433 GGTAAACTAA
Statistics
Matches: 346, Mismatches: 54, Indels: 32
0.80 0.12 0.07
Matches are distributed among these distances:
25 2 0.01
26 11 0.03
27 317 0.92
28 14 0.04
29 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (26 bp):
TTTGGTAATTTTACAATCAGGGGTAT
Found at i:32592439 original size:27 final size:27
Alignment explanation
Indices: 32592038--32592432 Score: 484
Period size: 27 Copynumber: 14.6 Consensus size: 27
32592028 TACAGGTCGA
* * * *
32592038 GGGTATTTTAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
32592065 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* **
32592092 GGGTATTTTGATAATTTTACGAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
32592119 GGGTATTTTGGTAATTTTACAAATCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
32592146 GGGTATCTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
32592173 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
32592200 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
32592227 GGGTATTTTGGTAATTATACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
32592254 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
32592281 GGGTATTCTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
32592308 GGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTATAAACCAG
*
32592335 GGGTATTTTTGTAATTTTATAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
32592362 GGGTATTTTTGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
32592389 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
32592416 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
32592433 GGTAAACTAA
Statistics
Matches: 314, Mismatches: 54, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 314 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAG
Found at i:32592439 original size:54 final size:54
Alignment explanation
Indices: 32591990--32592432 Score: 564
Period size: 54 Copynumber: 8.2 Consensus size: 54
32591980 TTAGGGGCAC
* ** * * ***
32591990 TTTGGTAATTTTACAAGTCGAGGGTATTTTAATAATTTTACAGGTC-GAGGGTAT
1 TTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG-GGGTAT
* * * * * * *
32592044 TTTAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTAT
1 TTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAT
* ** * * *
32592098 TTTGATAATTTTACGAACCAGGGGTATTTTGGTAATTTTACAAATCAGGGGTAT
1 TTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAT
* *
32592152 CTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAT
1 TTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAT
* * *
32592206 TTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTATACAAACCAGGGGTAT
1 TTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAT
* *
32592260 TTTGGTGATTTTATAAACCAAGGGTATTCTAGTAATTTTACAAACCAGGGGTAT
1 TTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAT
* * * *
32592314 TTTGGTAATTTTGTAAACTAAGGGTATTTTTGTAATTTTATAAACCAGGGGTAT
1 TTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAT
* *
32592368 TTTTGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAT
1 TTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAT
32592422 TTTGGTAATTT
1 TTTGGTAATTT
32592433 GGTAAACTAA
Statistics
Matches: 338, Mismatches: 50, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
54 337 1.00
55 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (54 bp):
TTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAT
Found at i:32593783 original size:23 final size:23
Alignment explanation
Indices: 32593755--32593800 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
32593745 GTTTTGGCCG
32593755 AACCCTTGAAGGTTTTGTTTCTT
1 AACCCTTGAAGGTTTTGTTTCTT
*
32593778 AACCCTTGGAGGTTTTGTTTCTT
1 AACCCTTGAAGGTTTTGTTTCTT
32593801 TTCTTTCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.15, C:0.17, G:0.20, T:0.48
Consensus pattern (23 bp):
AACCCTTGAAGGTTTTGTTTCTT
Found at i:32597795 original size:40 final size:40
Alignment explanation
Indices: 32597739--32597816 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
32597729 AAAACCACAG
* *
32597739 CTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAACACCA
1 CTATAGATCGACCATTAGCGGCGCTTTCTGAAAAACACCA
* * *
32597779 CTATAGGTCGACCATTAGCTGCTCTTTCTGAAAAACAC
1 CTATAGATCGACCATTAGCGGCGCTTTCTGAAAAACAC
32597817 TACAAAAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (40 bp):
CTATAGATCGACCATTAGCGGCGCTTTCTGAAAAACACCA
Found at i:32597950 original size:114 final size:114
Alignment explanation
Indices: 32597750--32598056 Score: 350
Period size: 114 Copynumber: 2.7 Consensus size: 114
32597740 TATAGATCGA
* * *
32597750 GCATTAGCGGCGCTTTTTGAAAAACACCACTATAGGTCGACCATTAGC-TGCTCTTTCTGAAAAA
1 GCATTAGCGGCACTTTTTGAAAAACACCACTATAGGTCGAGCATTAGCAT-CGCTTTCTGAAAAA
** *
32597814 CACTACAAAAAAATTAAGCACAACGCCGTCGTTTTATGTGAGCTTTAATG
65 CACCGCAAAAAAATTAAGCACAACGCCGTCGTTTTATATGAGCTTTAATG
* * * ** *
32597864 GCATTAGTGGTACTTTTTAAAAAATGCCATTATAGGTCGAGCATTAGCATCGCTTTCTGAAAAAC
1 GCATTAGCGGCACTTTTTGAAAAACACCACTATAGGTCGAGCATTAGCATCGCTTTCTGAAAAAC
* * * * *
32597929 GCCGCAAAAAAATTAAGCACAACGTCGTTGTTTTCTATGAGCTTTAGTG
66 ACCGCAAAAAAATTAAGCACAACGCCGTCGTTTTATATGAGCTTTAATG
* * ** * * *
32597978 GCATTAGCGGCGCTTTTTGAAAAACACC-GTATAGACCAAGCATTAGCAGCGCTTTTTGAAAAAC
1 GCATTAGCGGCACTTTTTGAAAAACACCACTATAGGTCGAGCATTAGCATCGCTTTCTGAAAAAC
* *
32598042 CCCG-TAAAAAATTAA
66 ACCGCAAAAAAATTAA
32598057 TTTAGTTTAT
Statistics
Matches: 161, Mismatches: 31, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
112 10 0.06
113 33 0.20
114 117 0.73
115 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.28
Consensus pattern (114 bp):
GCATTAGCGGCACTTTTTGAAAAACACCACTATAGGTCGAGCATTAGCATCGCTTTCTGAAAAAC
ACCGCAAAAAAATTAAGCACAACGCCGTCGTTTTATATGAGCTTTAATG
Found at i:32598123 original size:21 final size:21
Alignment explanation
Indices: 32598099--32598148 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
32598089 GCTTATAATT
*
32598099 TAGGTTTTTTGGTTTATGGTC
1 TAGGTTTTATGGTTTATGGTC
* *
32598120 TAGGATTTATGGTTTATGGTT
1 TAGGTTTTATGGTTTATGGTC
32598141 TAAGGTTT
1 T-AGGTTT
32598149 GGGGGTAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 19 0.79
22 5 0.21
ACGTcount: A:0.16, C:0.02, G:0.28, T:0.54
Consensus pattern (21 bp):
TAGGTTTTATGGTTTATGGTC
Found at i:32598621 original size:14 final size:14
Alignment explanation
Indices: 32598595--32598665 Score: 72
Period size: 14 Copynumber: 5.1 Consensus size: 14
32598585 AAATATTTAA
32598595 TTATGGTTTAAGGG
1 TTATGGTTTAAGGG
* * *
32598609 TTGTGGTTAAAGGT
1 TTATGGTTTAAGGG
*
32598623 TTATGGTTTAAGGT
1 TTATGGTTTAAGGG
*
32598637 TTAGGGTTT-AGGG
1 TTATGGTTTAAGGG
*
32598650 TTTATGGTTTAGGGG
1 -TTATGGTTTAAGGG
32598665 T
1 T
32598666 AGGGGTTATG
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
13 3 0.07
14 40 0.87
15 3 0.07
ACGTcount: A:0.18, C:0.00, G:0.37, T:0.45
Consensus pattern (14 bp):
TTATGGTTTAAGGG
Found at i:32598630 original size:7 final size:7
Alignment explanation
Indices: 32598595--32598660 Score: 60
Period size: 7 Copynumber: 9.4 Consensus size: 7
32598585 AAATATTTAA
32598595 TTATGGT
1 TTATGGT
* *
32598602 TTAAGGG
1 TTATGGT
*
32598609 TTGTGGT
1 TTATGGT
* *
32598616 TAAAGGT
1 TTATGGT
32598623 TTATGGT
1 TTATGGT
*
32598630 TTAAGGT
1 TTATGGT
*
32598637 TTAGGGT
1 TTATGGT
*
32598644 TTAGGGT
1 TTATGGT
32598651 TTATGGT
1 TTATGGT
32598658 TTA
1 TTA
32598661 GGGGTAGGGG
Statistics
Matches: 46, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
7 46 1.00
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.47
Consensus pattern (7 bp):
TTATGGT
Found at i:32598635 original size:28 final size:28
Alignment explanation
Indices: 32598595--32598669 Score: 91
Period size: 28 Copynumber: 2.7 Consensus size: 28
32598585 AAATATTTAA
32598595 TTATGGTTTAAGGGTT-GTGGTTAAAGGT
1 TTATGGTTTAAGGGTTAG-GGTTAAAGGT
* * *
32598623 TTATGGTTTAAGGTTTAGGGTTTAGGGT
1 TTATGGTTTAAGGGTTAGGGTTAAAGGT
*
32598651 TTATGGTTT-AGGGGTAGGG
1 TTATGGTTTAAGGGTTAGGG
32598670 GTTATGATGT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
27 8 0.20
28 32 0.78
29 1 0.02
ACGTcount: A:0.19, C:0.00, G:0.39, T:0.43
Consensus pattern (28 bp):
TTATGGTTTAAGGGTTAGGGTTAAAGGT
Found at i:32598659 original size:21 final size:21
Alignment explanation
Indices: 32598620--32598663 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
32598610 TGTGGTTAAA
*
32598620 GGTTTATGGTTTAAGGTTTAG
1 GGTTTAGGGTTTAAGGTTTAG
*
32598641 GGTTTAGGGTTTATGGTTTAG
1 GGTTTAGGGTTTAAGGTTTAG
32598662 GG
1 GG
32598664 GTAGGGGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.00, G:0.39, T:0.45
Consensus pattern (21 bp):
GGTTTAGGGTTTAAGGTTTAG
Found at i:32598672 original size:21 final size:21
Alignment explanation
Indices: 32598627--32598669 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
32598617 AAAGGTTTAT
*
32598627 GGTTTAAGGTTTAGGGTTTAG
1 GGTTTAAGGTTTAGGGTGTAG
*
32598648 GGTTTATGGTTTAGGG-GTAG
1 GGTTTAAGGTTTAGGGTGTAG
32598668 GG
1 GG
32598670 GTTATGATGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.16, C:0.00, G:0.44, T:0.40
Consensus pattern (21 bp):
GGTTTAAGGTTTAGGGTGTAG
Found at i:32600207 original size:46 final size:46
Alignment explanation
Indices: 32600140--32600232 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
32600130 GTACTCTACC
32600140 ATGTTCTTGAGTTTATTCCTATTATTAGTCATCCATTAACATATAT
1 ATGTTCTTGAGTTTATTCCTATTATTAGTCATCCATTAACATATAT
32600186 ATGTTCTTGAGTTTATTCCTATTATTAGTCATCCATTAACATATAT
1 ATGTTCTTGAGTTTATTCCTATTATTAGTCATCCATTAACATATAT
32600232 A
1 A
32600233 CTTAAAATTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.29, C:0.15, G:0.09, T:0.47
Consensus pattern (46 bp):
ATGTTCTTGAGTTTATTCCTATTATTAGTCATCCATTAACATATAT
Found at i:32600656 original size:3 final size:3
Alignment explanation
Indices: 32600648--32600676 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
32600638 TGATTTGGGT
32600648 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
32600677 TACTGTCTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:32602601 original size:16 final size:16
Alignment explanation
Indices: 32602580--32602647 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
32602570 TTTGGTTCGC
32602580 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
32602596 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
32602612 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
32602628 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
32602644 TGTA
1 TGTA
32602648 ATAGCAAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:32602915 original size:17 final size:17
Alignment explanation
Indices: 32602875--32603084 Score: 63
Period size: 17 Copynumber: 12.6 Consensus size: 17
32602865 AACATAATTA
32602875 TTATT-AAATATAT--T
1 TTATTAAAATATATAAT
*
32602889 TT-TTATAATATATAAT
1 TTATTAAAATATATAAT
32602905 TTGA-TAAAATATATGAAT
1 TT-ATTAAAATATAT-AAT
32602923 TTATTAAAAT-TATAAT
1 TTATTAAAATATATAAT
* * *
32602939 ATA-TAATATTATAAAAT
1 TTATTAA-AATATATAAT
* *
32602956 ATAATTTAAAATA-ATTA-
1 -TTA-TTAAAATATATAAT
32602973 TTATT--AA-ATATAAT
1 TTATTAAAATATATAAT
**
32602987 TTAACAAAAATATATAAT
1 TT-ATTAAAATATATAAT
* *
32603005 TTACTAAAAT-CATAAT
1 TTATTAAAATATATAAT
* * *
32603021 ATA-TAATACTATAAAATT
1 TTATTAA-AATATATAA-T
*
32603039 ATTATTATTAA-ATATAAT
1 -TTATTA-AAATATATAAT
**
32603057 TTAACAAAAATATATAAT
1 TT-ATTAAAATATATAAT
*
32603075 TTAATAAAAT
1 TTATTAAAAT
32603085 TAAATATTCT
Statistics
Matches: 141, Mismatches: 29, Indels: 49
0.64 0.13 0.22
Matches are distributed among these distances:
12 1 0.01
13 7 0.05
14 11 0.08
15 9 0.06
16 21 0.15
17 40 0.28
18 36 0.26
19 10 0.07
20 6 0.04
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.43
Consensus pattern (17 bp):
TTATTAAAATATATAAT
Found at i:32602942 original size:24 final size:22
Alignment explanation
Indices: 32602912--32602960 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 22
32602902 AATTTGATAA
32602912 AATATATGAAT-TTATTAAAATTAT
1 AATATAT-AATATTA-TAAAA-TAT
32602936 AATATATAATATTATAAAATAT
1 AATATATAATATTATAAAATAT
32602958 AAT
1 AAT
32602961 TTAAAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.25
23 8 0.33
24 10 0.42
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
AATATATAATATTATAAAATAT
Found at i:32602953 original size:41 final size:39
Alignment explanation
Indices: 32602891--32603027 Score: 127
Period size: 41 Copynumber: 3.4 Consensus size: 39
32602881 AATATATTTT
*
32602891 TTATAATATATAATTTGATAAAATATATGAATTTATTAAAA
1 TTATAATATATAATTTAATAAAATATAT-AATTTA-TAAAA
*
32602932 TTATAATATATAATATT-AT-AAA-ATATAATTTAAAATAA
1 TTATAATATATAAT-TTAATAAAATATATAATTTATAA-AA
* *
32602970 TTATTATTAAATATAATTTAACAAAAATATATAATTTACTAAAA
1 TTA-TA--ATATATAATTTAA-TAAAATATATAATTTA-TAAAA
*
32603014 TCATAATATATAAT
1 TTATAATATATAAT
32603028 ACTATAAAAT
Statistics
Matches: 80, Mismatches: 6, Indels: 20
0.75 0.06 0.19
Matches are distributed among these distances:
37 2 0.03
38 11 0.14
39 6 0.08
40 5 0.06
41 33 0.41
42 2 0.03
43 5 0.06
44 14 0.17
45 2 0.03
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.42
Consensus pattern (39 bp):
TTATAATATATAATTTAATAAAATATATAATTTATAAAA
Found at i:32602981 original size:26 final size:25
Alignment explanation
Indices: 32602941--32603003 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 25
32602931 ATTATAATAT
32602941 ATAATATTATAAAATATAATTTAAA
1 ATAATATTATAAAATATAATTTAAA
*
32602966 ATAATTATTATTAAATATAATTTAACA
1 ATAA-TATTATAAAATATAATTTAA-A
*
32602993 AAAATA-TATAA
1 ATAATATTATAA
32603004 TTTACTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 8 0.24
26 21 0.64
27 4 0.12
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (25 bp):
ATAATATTATAAAATATAATTTAAA
Found at i:32605433 original size:21 final size:21
Alignment explanation
Indices: 32605409--32605455 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
32605399 CAACTTCTTT
*
32605409 GCAGTGATGACAAACTGTTCC
1 GCAGCGATGACAAACTGTTCC
*
32605430 GCAGCGATGACAAACTGTTCT
1 GCAGCGATGACAAACTGTTCC
32605451 GCAGC
1 GCAGC
32605456 CTTTAAGATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.26, T:0.21
Consensus pattern (21 bp):
GCAGCGATGACAAACTGTTCC
Done.