Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 102 of 333
Found at i:32606993 original size:42 final size:38
Alignment explanation
Indices: 32606900--32607012 Score: 122
Period size: 42 Copynumber: 2.9 Consensus size: 38
32606890 GCAAACAACA
* *
32606900 CTATCAACAAACAACAGT-ATGCATTTCTTAAGCCTAAC
1 CTATCAACAAACAACAGTCAT-CAATTCTTAAGCCAAAC
* *
32606938 C-AACAACAGACAACAGTCATCAATTCTTAAGCCAAGGCAC
1 CTATCAACAAACAACAGTCATCAATTCTTAAGCCAA---AC
*
32606978 CTTATCAACAAACAACAATCATCAATTCTTAAGCC
1 C-TATCAACAAACAACAGTCATCAATTCTTAAGCC
32607013 TAATCCAAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
37 27 0.44
38 3 0.05
40 3 0.05
42 29 0.47
ACGTcount: A:0.42, C:0.28, G:0.08, T:0.22
Consensus pattern (38 bp):
CTATCAACAAACAACAGTCATCAATTCTTAAGCCAAAC
Found at i:32607399 original size:38 final size:38
Alignment explanation
Indices: 32607357--32607497 Score: 131
Period size: 38 Copynumber: 4.0 Consensus size: 38
32607347 GCAGAAACTG
32607357 GCAAATCGGCAGAAAAGAAAAGAAAAGAAACAAAGGGA
1 GCAAATCGGCAGAAAAGAAAAGAAAAGAAACAAAGGGA
* *
32607395 GCAAATCGACAGAAAAGAAAAGAAAATAAAC--A--GA
1 GCAAATCGGCAGAAAAGAAAAGAAAAGAAACAAAGGGA
*
32607429 G------GGCAGAAAAGAAAAGAAAAGAAACGAAGGGA
1 GCAAATCGGCAGAAAAGAAAAGAAAAGAAACAAAGGGA
** * * * *
32607461 GCAAATTAGAAGAAAAGAACAGAAAATAAACAGAGGG
1 GCAAATCGGCAGAAAAGAAAAGAAAAGAAACAAAGGG
32607498 CAGAAAAGAA
Statistics
Matches: 83, Mismatches: 10, Indels: 20
0.73 0.09 0.18
Matches are distributed among these distances:
28 22 0.27
30 1 0.01
32 3 0.04
34 3 0.04
36 1 0.01
38 53 0.64
ACGTcount: A:0.61, C:0.09, G:0.26, T:0.04
Consensus pattern (38 bp):
GCAAATCGGCAGAAAAGAAAAGAAAAGAAACAAAGGGA
Found at i:32607444 original size:66 final size:66
Alignment explanation
Indices: 32607364--32607513 Score: 257
Period size: 66 Copynumber: 2.3 Consensus size: 66
32607354 CTGGCAAATC
*
32607364 GGCAGAAAAGAAAAGAAAAGAAACAAAGGGAGCAAA-TCGACAGAAAAGAAAAGAAAATAAACAG
1 GGCAGAAAAGAAAAGAAAAGAAACAAAGGGAGCAAATTAGA-AGAAAAGAAAAGAAAATAAACAG
32607428 AG
65 AG
* *
32607430 GGCAGAAAAGAAAAGAAAAGAAACGAAGGGAGCAAATTAGAAGAAAAGAACAGAAAATAAACAGA
1 GGCAGAAAAGAAAAGAAAAGAAACAAAGGGAGCAAATTAGAAGAAAAGAAAAGAAAATAAACAGA
32607495 G
66 G
32607496 GGCAGAAAAGAAAAGAAA
1 GGCAGAAAAGAAAAGAAA
32607514 CGGAGGGAGC
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
66 77 0.96
67 3 0.04
ACGTcount: A:0.63, C:0.08, G:0.25, T:0.03
Consensus pattern (66 bp):
GGCAGAAAAGAAAAGAAAAGAAACAAAGGGAGCAAATTAGAAGAAAAGAAAAGAAAATAAACAGA
G
Found at i:32607447 original size:61 final size:62
Alignment explanation
Indices: 32607371--32607534 Score: 224
Period size: 66 Copynumber: 2.6 Consensus size: 62
32607361 ATCGGCAGAA
*
32607371 AAGAAAAGAAAAGAAACAAAGGGAGCAAATCGACAGAAAAGAAAAGAAAATAAACAGAGGGC
1 AAGAAAAGAAAAGAAACGAAGGGAGCAAATCGACAGAAAAGAAAAGAAAATAAACAGAGGGC
* *
32607433 AGAAAAGAAAAGAAAAGAAACGAAGGGAGCAAATTAGA-AGAAAAGAACAGAAAATAAACAGAGG
1 ----AAGAAAAGAAAAGAAACGAAGGGAGCAAA-TCGACAGAAAAGAAAAGAAAATAAACAGAGG
32607497 GC
61 GC
* *
32607499 -AGAAAAGAAAAGAAACGGAGGGAGCAAATCGGCAGA
1 AAGAAAAGAAAAGAAACGAAGGGAGCAAATCGACAGA
32607535 GGCTAGAAGG
Statistics
Matches: 90, Mismatches: 6, Indels: 9
0.86 0.06 0.09
Matches are distributed among these distances:
60 2 0.02
61 30 0.33
66 55 0.61
67 3 0.03
ACGTcount: A:0.60, C:0.09, G:0.27, T:0.04
Consensus pattern (62 bp):
AAGAAAAGAAAAGAAACGAAGGGAGCAAATCGACAGAAAAGAAAAGAAAATAAACAGAGGGC
Found at i:32607507 original size:23 final size:23
Alignment explanation
Indices: 32607476--32607520 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
32607466 TTAGAAGAAA
* *
32607476 AGAACAGAAAATAAACAGAGGGC
1 AGAAAAGAAAAGAAACAGAGGGC
*
32607499 AGAAAAGAAAAGAAACGGAGGG
1 AGAAAAGAAAAGAAACAGAGGG
32607521 AGCAAATCGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.58, C:0.09, G:0.31, T:0.02
Consensus pattern (23 bp):
AGAAAAGAAAAGAAACAGAGGGC
Found at i:32608969 original size:42 final size:43
Alignment explanation
Indices: 32608905--32609228 Score: 361
Period size: 43 Copynumber: 7.6 Consensus size: 43
32608895 ATAATTTTTT
*
32608905 TAAAGGTCATGTTTTTTAGCGGCGTTTGT-GAGAAAAGCGCCGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTAG-GAAAAGCGCCGC
* * * * *
32608948 TAAAGGT-TTGTTCTATAGCGGCGTTTGT-GGGAAAGTGTCGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTAGGAAAAGCGCCGC
* * * *
32608989 TAAAGGTCATGTT-TTTAGCAGCGTTTCTAGGAAAAGTGCAGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTAGGAAAAGCGCCGC
* * * **
32609031 TAAAGGGCATGTTCTTTAGCGACGTTTCTAGGAAAAGCGTTGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTAGGAAAAGCGCCGC
* * *
32609074 TAAAGGTCATGTTCTTTAGCGGCGTTTGT-GGGAATGCGCCAC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTAGGAAAAGCGCCGC
* * *
32609116 TAAAGGTCATGTGCTTTAGCGGGGTTTGTAGGAAAAGCACCGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTAGGAAAAGCGCCGC
* * *
32609159 TAAAGGTCATGTTCTTTAGCGACATTTGTAGGAAAAGCGCCAC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTAGGAAAAGCGCCGC
** *
32609202 TAAAAATCATGTTCTATAGCGGCGTTT
1 TAAAGGTCATGTTCTTTAGCGGCGTTT
32609229 TTTTCATGAA
Statistics
Matches: 233, Mismatches: 44, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
41 28 0.12
42 80 0.34
43 125 0.54
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (43 bp):
TAAAGGTCATGTTCTTTAGCGGCGTTTGTAGGAAAAGCGCCGC
Found at i:32609120 original size:85 final size:86
Alignment explanation
Indices: 32608905--32609228 Score: 354
Period size: 85 Copynumber: 3.8 Consensus size: 86
32608895 ATAATTTTTT
* * **
32608905 TAAAGGTCATGTTTTTTAGCGGCGTTTGT-GAGAAAAGCGCCGCTAAA-GGTTTGTTCTATAGCG
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTAG-GAAAAGCGCCACTAAAGGGCATGTTCTATAGCG
* *
32608968 GCGTTTGT-GGGAAAGTGTCGC
65 GCGTTTGTAGGAAAAGCGTCGC
* * * *
32608989 TAAAGGTCATGTT-TTTAGCAGCGTTTCTAGGAAAAGTG-CAGCTAAAGGGCATGTTCTTTAGCG
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTAGGAAAAGCGCCA-CTAAAGGGCATGTTCTATAGCG
* * *
32609052 ACGTTTCTAGGAAAAGCGTTGC
65 GCGTTTGTAGGAAAAGCGTCGC
* * * * *
32609074 TAAAGGTCATGTTCTTTAGCGGCGTTTGT-GGGAATGCGCCACTAAAGGTCATGTGCTTTAGCGG
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTAGGAAAAGCGCCACTAAAGGGCATGTTCTATAGCGG
* **
32609138 GGTTTGTAGGAAAAGCACCGC
66 CGTTTGTAGGAAAAGCGTCGC
* * ***
32609159 TAAAGGTCATGTTCTTTAGCGACATTTGTAGGAAAAGCGCCACTAAAAATCATGTTCTATAGCGG
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTAGGAAAAGCGCCACTAAAGGGCATGTTCTATAGCGG
32609224 CGTTT
66 CGTTT
32609229 TTTTCATGAA
Statistics
Matches: 199, Mismatches: 34, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
82 1 0.01
83 25 0.13
84 33 0.17
85 92 0.46
86 48 0.24
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (86 bp):
TAAAGGTCATGTTCTTTAGCGGCGTTTGTAGGAAAAGCGCCACTAAAGGGCATGTTCTATAGCGG
CGTTTGTAGGAAAAGCGTCGC
Found at i:32613216 original size:37 final size:35
Alignment explanation
Indices: 32613154--32613223 Score: 88
Period size: 37 Copynumber: 1.9 Consensus size: 35
32613144 TTCCAAAAAT
*
32613154 AATATTATTTTAATAGTTTAATATTAAATTTAATTG
1 AATATTATTTTAATAATTTAATATT-AATTTAATTG
*
32613190 AATACTTATTTTAATAATATT-TTATTAATTTAAT
1 AATA-TTATTTTAATAAT-TTAATATTAATTTAAT
32613224 ATTAAAGTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
36 12 0.40
37 16 0.53
38 2 0.07
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.54
Consensus pattern (35 bp):
AATATTATTTTAATAATTTAATATTAATTTAATTG
Found at i:32613236 original size:20 final size:18
Alignment explanation
Indices: 32613154--32613263 Score: 57
Period size: 19 Copynumber: 5.9 Consensus size: 18
32613144 TTCCAAAAAT
* *
32613154 AATATTATTTTAATAGTTT
1 AATATTAATTTAATA-TTA
*
32613173 AATATTAAATTT-A-ATTG
1 AATATT-AATTTAATATTA
* *
32613190 AATACTTATTTTAATAATA
1 AATA-TTAATTTAATATTA
**
32613209 TTTTATTAATTTAATATTA
1 -AATATTAATTTAATATTA
*
32613228 AAGTGATT-ATCTTATTATTA
1 AA-T-ATTAAT-TTAATATTA
32613248 AAT-TTAATTTAATATT
1 AATATTAATTTAATATT
32613264 TATCTTGTAA
Statistics
Matches: 69, Mismatches: 13, Indels: 20
0.68 0.13 0.20
Matches are distributed among these distances:
17 19 0.28
18 6 0.09
19 25 0.36
20 19 0.28
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.54
Consensus pattern (18 bp):
AATATTAATTTAATATTA
Found at i:32613408 original size:130 final size:127
Alignment explanation
Indices: 32613156--32613384 Score: 290
Period size: 130 Copynumber: 1.8 Consensus size: 127
32613146 CCAAAAATAA
* *
32613156 TATTATTTTAATAGTTTAATATTAAATTTAATTGAATACTTATTTTAATAATATTTTATTAATTT
1 TATTATTTTAATAGTTTAATATTAAATTTAATTGAATACTTATCTTAATAATATTATATTAATTT
* * * * **
32613221 AATATTAAAGTGATTATCTTATTATTAAATTTAATTTAATATTTATCTTGTAAATAAATATTC
66 AATATTAAAGTGA-TATCTAAGTATTAAATATAATTGAATATTTATCTCCTAAATAAATATTC
*
32613284 TATTATTTTAATAAGATTTAATATTAAATTTAATCT-AATATTTATCTTAATAAATATTATATTA
1 TATTATTTTAAT-AG-TTTAATATTAAATTTAAT-TGAATACTTATCTTAAT-AATATTATATTA
32613348 ATTTAATATTAAAGT-A-AT-TAAGT-TT-AATATAATTGAA
62 ATTTAATATTAAAGTGATATCTAAGTATTAAATATAATTGAA
32613385 CTCTTTCAAC
Statistics
Matches: 90, Mismatches: 7, Indels: 11
0.83 0.06 0.10
Matches are distributed among these distances:
125 10 0.11
126 2 0.02
127 3 0.03
128 14 0.16
129 2 0.02
130 32 0.36
131 27 0.30
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (127 bp):
TATTATTTTAATAGTTTAATATTAAATTTAATTGAATACTTATCTTAATAATATTATATTAATTT
AATATTAAAGTGATATCTAAGTATTAAATATAATTGAATATTTATCTCCTAAATAAATATTC
Found at i:32620196 original size:29 final size:27
Alignment explanation
Indices: 32620178--32620247 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
32620168 ATATTAAGTC
32620178 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
32620205 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
32620233 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
32620248 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:32620241 original size:28 final size:28
Alignment explanation
Indices: 32620178--32620275 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
32620168 ATATTAAGTC
*
32620178 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
32620205 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
32620233 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
32620262 CGCACACTTAGTGC
1 CGCACACTTAGTGC
32620276 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:32626750 original size:47 final size:47
Alignment explanation
Indices: 32626698--32627820 Score: 1850
Period size: 47 Copynumber: 23.6 Consensus size: 47
32626688 GATAATTGTG
* *
32626698 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
32626745 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
32626792 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
32626841 ATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
32626888 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
32626935 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
32626984 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
32627033 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
32627080 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
32627127 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
32627174 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
32627221 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGACGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
32627270 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
32627317 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
32627366 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
32627413 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
32627460 ATGTGAAAGTGTATAGATATGTGATAAGGCCTAATGGACGATGTGATGA
1 ATGTGAAAGTGTAT--ATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
32627509 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
32627556 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
32627605 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
32627654 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
32627701 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
32627748 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
32627795 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
32627821 TCCCGAAGGG
Statistics
Matches: 1016, Mismatches: 48, Indels: 24
0.93 0.04 0.02
Matches are distributed among these distances:
47 651 0.64
49 365 0.36
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:32626805 original size:96 final size:94
Alignment explanation
Indices: 32626698--32627820 Score: 1850
Period size: 96 Copynumber: 11.8 Consensus size: 94
32626688 GATAATTGTG
* *
32626698 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
32626763 GTGATAAGGCCTAATAGCCAATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
*
32626792 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGAGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
32626857 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
32626888 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
32626953 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
32626984 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
32627049 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
32627080 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
32627145 GTGATAAGGCCTAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
* *
32627174 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
*
32627239 ATGTGATAAGGCCTAATGGACGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
32627270 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
*
32627335 ATGTGATAAGGCCTAATAGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
32627366 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
32627431 GTGATAAGGCCGAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
*
32627460 ATGTGAAAGTGTATAGATATGTGATAAGGCCTAATGGACGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTAT--ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
32627525 ATGTGATAAGGCCGAATGGCCAATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
32627556 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
32627621 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
62 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
32627654 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
32627719 GTGATGAGGCCTAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
32627748 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
32627813 GTGATAAG
66 GTGATAAG
32627821 TCCCGAAGGG
Statistics
Matches: 977, Mismatches: 38, Indels: 28
0.94 0.04 0.03
Matches are distributed among these distances:
94 336 0.34
96 548 0.56
98 93 0.10
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:32627081 original size:239 final size:237
Alignment explanation
Indices: 32626698--32627820 Score: 1885
Period size: 239 Copynumber: 4.7 Consensus size: 237
32626688 GATAATTGTG
* *
32626698 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * *
32626761 ATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAA
* * *
32626826 TGGCCGATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
129 TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATG
* *
32626891 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
194 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
32626935 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
32627000 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
*
32627065 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATG
129 TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATG
32627130 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
194 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
32627174 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
32627239 ATGTGATAAGGCCTAATGGACGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
32627304 GCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATG
131 GCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATG
32627369 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
194 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
32627413 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATAGAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
32627478 ATGTGATAAGGCCTAATGGACGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
*
32627543 GCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
131 GCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATG
32627608 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
194 TGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
32627654 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * *
32627717 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
* * *
32627782 GCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
131 GCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
32627821 TCCCGAAGGG
Statistics
Matches: 851, Mismatches: 27, Indels: 16
0.95 0.03 0.02
Matches are distributed among these distances:
237 161 0.19
239 553 0.65
241 137 0.16
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (237 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
GCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:32631033 original size:49 final size:49
Alignment explanation
Indices: 32630973--32631154 Score: 274
Period size: 49 Copynumber: 3.7 Consensus size: 49
32630963 AAGCTATCTA
*
32630973 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCG
* * * *
32631022 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCG
* *
32631073 GTACGCATAGTAGCCTGCACTTAGTACTGCACATGCGACCAATTATCCG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCG
*
32631122 GTACACGTAGTAGCCTGCACTTAGTACTACACA
1 GTACACATAGTAGCCTGCACTTAGTACTACACA
32631155 CGTGACCTCA
Statistics
Matches: 117, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
49 71 0.61
50 6 0.05
51 40 0.34
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (49 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCG
Found at i:32631108 original size:100 final size:100
Alignment explanation
Indices: 32630973--32631159 Score: 356
Period size: 100 Copynumber: 1.9 Consensus size: 100
32630963 AAGCTATCTA
32630973 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCCT
32631038 GCACTTAGTACTACACACGTGATCGAAGTTATCGG
66 GCACTTAGTACTACACACGTGATCGAAGTTATCGG
* *
32631073 GTACGCATAGTAGCCTGCACTTAGTACTGCACATGCGACCAATTATCCGGTACACGTAGTAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCCT
32631138 GCACTTAGTACTACACACGTGA
66 GCACTTAGTACTACACACGTGA
32631160 CCTCACAATA
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
100 85 1.00
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (100 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCCT
GCACTTAGTACTACACACGTGATCGAAGTTATCGG
Found at i:32633832 original size:13 final size:13
Alignment explanation
Indices: 32633814--32633838 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32633804 TCGATAGGGA
32633814 CATGCCCGTGTGT
1 CATGCCCGTGTGT
32633827 CATGCCCGTGTG
1 CATGCCCGTGTG
32633839 AGGTGGCTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.32, T:0.28
Consensus pattern (13 bp):
CATGCCCGTGTGT
Found at i:32634166 original size:36 final size:36
Alignment explanation
Indices: 32634119--32634195 Score: 136
Period size: 36 Copynumber: 2.1 Consensus size: 36
32634109 ATACCCCCAC
* *
32634119 ACTTAAGCGTTTGCTTGTCTTCAAGCAAAATCTTCA
1 ACTTAAGCGTTTGCATGTCTTCAAGCAAAATCCTCA
32634155 ACTTAAGCGTTTGCATGTCTTCAAGCAAAATCCTCA
1 ACTTAAGCGTTTGCATGTCTTCAAGCAAAATCCTCA
32634191 ACTTA
1 ACTTA
32634196 CAAACAAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (36 bp):
ACTTAAGCGTTTGCATGTCTTCAAGCAAAATCCTCA
Found at i:32636211 original size:40 final size:40
Alignment explanation
Indices: 32636166--32636357 Score: 190
Period size: 40 Copynumber: 4.8 Consensus size: 40
32636156 AGAACCACAA
* *
32636166 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
32636206 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
** * * *
32636246 GCACAAATGCCTTCGGGTCTTAGTCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
32636286 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * *
32636326 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT
32636358 CATTCAAATG
Statistics
Matches: 140, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 135 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:32636250 original size:80 final size:80
Alignment explanation
Indices: 32636137--32636356 Score: 239
Period size: 80 Copynumber: 2.8 Consensus size: 80
32636127 ACCCAAGTTT
* * * * * * * * *
32636137 CTTCGGAATTTAG-CCGGATAGAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
*
32636200 CAACTCGCACAAATGC
66 C-ACTAGCACAAATGC
* * * *
32636216 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGTCCGGATAAAA
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
* *
32636280 TCACTAGCATAAATGC
65 GCACTAGCACAAATGC
* *
32636296 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
32636357 TCATTCAAAT
Statistics
Matches: 115, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
79 12 0.10
80 96 0.83
81 7 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
CACTAGCACAAATGC
Found at i:32639380 original size:18 final size:19
Alignment explanation
Indices: 32639357--32639403 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
32639347 ATTGAAAAAG
* * *
32639357 ATAAATAAAGATAAAAGTA
1 ATAAATAAAAACAAAAATA
32639376 A-AAATAAAAACAAAAATA
1 ATAAATAAAAACAAAAATA
32639394 ATAAATAAAA
1 ATAAATAAAA
32639404 GTCTTCAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 15 0.62
19 9 0.38
ACGTcount: A:0.77, C:0.02, G:0.04, T:0.17
Consensus pattern (19 bp):
ATAAATAAAAACAAAAATA
Found at i:32639385 original size:6 final size:6
Alignment explanation
Indices: 32639359--32639403 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
32639349 TGAAAAAGAT
* * *
32639359 AAATAA AGATAA AAGTAA AAATAA AAACAA AAATAA TAAATAA AA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA -AAATAA AA
32639404 GTCTTCAAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
6 26 0.81
7 6 0.19
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:32641490 original size:23 final size:24
Alignment explanation
Indices: 32641450--32641494 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
32641440 TTTGCTCTTC
*
32641450 TAGCATGAACTTGACTTACCTTTT
1 TAGCATGAACTCGACTTACCTTTT
*
32641474 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGACTTACCTT
32641495 ACCTTACCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.40
Consensus pattern (24 bp):
TAGCATGAACTCGACTTACCTTTT
Found at i:32641817 original size:55 final size:53
Alignment explanation
Indices: 32641563--32641817 Score: 199
Period size: 55 Copynumber: 4.8 Consensus size: 53
32641553 ACATGGGTAC
* *
32641563 CTTACC-ATTGCCATGACTTGCCATGGTCTTACGTGGTATCCTT---TT-GAAA
1 CTTACCAATTGCCATGCCTTG-CATGGTCTTACATGGTATCCTTGCCTTAGAAA
* * *
32641612 CTTA-CAATTTCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTCATG-AA
1 CTTACCAATTGCCATGCCTTG-CATGGTCTTACATGGTATCCTTGCCTTA-GAAA
* *
32641665 CTCACCAA-TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAAA
1 CTTACCAATTGCCATGCCTT-GCATGGTCTTACATGGTATCC-TTGCC-T-TAG-AAA
* * * * * * *
32641721 -TTATCAA-TGTCGTGTCTTAACATGGTCTTACATGATTTCCTTGCCTTAGAAA
1 CTTACCAATTGCCATGCCTT-GCATGGTCTTACATGGTATCCTTGCCTTAGAAA
*
32641773 CCTTACCAATTCCCATGCCTTAGCATGGTCTTACATGGTATCCTT
1 -CTTACCAATTGCCATGCCTT-GCATGGTCTTACATGGTATCCTT
32641818 AAACCCTAAT
Statistics
Matches: 161, Mismatches: 28, Indels: 28
0.74 0.13 0.13
Matches are distributed among these distances:
48 1 0.01
49 37 0.23
52 6 0.04
53 38 0.24
54 14 0.09
55 61 0.38
56 4 0.02
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.36
Consensus pattern (53 bp):
CTTACCAATTGCCATGCCTTGCATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:32646326 original size:56 final size:56
Alignment explanation
Indices: 32646261--32646436 Score: 325
Period size: 56 Copynumber: 3.1 Consensus size: 56
32646251 ACAAGGGATG
*
32646261 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
*
32646317 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAAAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
*
32646373 ATGGGCAAAGCATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
32646429 ATGGGCAA
1 ATGGGCAA
32646437 TAAACTAATA
Statistics
Matches: 116, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 116 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:32647707 original size:79 final size:81
Alignment explanation
Indices: 32647566--32647748 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
32647556 TCGAATGATG
* *
32647566 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
32647630 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * ** *
32647645 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAGGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
32647707 TTTGTGTGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
32647725 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
32647749 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.65
80 30 0.34
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:32647764 original size:40 final size:40
Alignment explanation
Indices: 32647567--32647750 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
32647557 CGAATGATGT
* * * *
32647567 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
32647607 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
32647647 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* * *
32647685 TCCGGGTTAAGTCCCGAGGGCATTTGTGTGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
32647726 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
32647751 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 78 0.63
41 10 0.08
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:32647772 original size:79 final size:79
Alignment explanation
Indices: 32647619--32647783 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
32647609 GGACTAAGAT
* **
32647619 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
32647684 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * * *
32647698 CCGAGGGCATTTGTGTGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* * *
32647761 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAGTC
32647777 CCGAAGG
1 CCGAAGG
32647784 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.64
80 24 0.33
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:32658006 original size:48 final size:47
Alignment explanation
Indices: 32657946--32658106 Score: 216
Period size: 48 Copynumber: 3.4 Consensus size: 47
32657936 TACCATGTCT
*
32657946 CAAACATGGTCTTACACTAGCTCTAATATTAATGCCGATGTCATGTTC
1 CAAACATGGTCTTACACTAGCTCTAATATTAACGCCGATG-CATGTTC
** * * *
32657994 CAAACATGGTCTTACACTAGCTC-ACATATCGAGGCCAATGCATGTCC
1 CAAACATGGTCTTACACTAGCTCTA-ATATTAACGCCGATGCATGTTC
* *
32658041 CAGACATGGTCTTACACTAGCTCTCATATTAACGCCGATGCCATGTTC
1 CAAACATGGTCTTACACTAGCTCTAATATTAACGCCGATG-CATGTTC
32658089 CAAACATGGTCTTACACT
1 CAAACATGGTCTTACACT
32658107 GGCCTATATA
Statistics
Matches: 97, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
47 40 0.41
48 57 0.59
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (47 bp):
CAAACATGGTCTTACACTAGCTCTAATATTAACGCCGATGCATGTTC
Found at i:32660652 original size:6 final size:6
Alignment explanation
Indices: 32660641--32660820 Score: 169
Period size: 6 Copynumber: 29.8 Consensus size: 6
32660631 AACCAAAATG
*
32660641 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
32660689 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
32660738 AGAATC AGTAA-C AGAATC AGAATC AGTATT AGTAA-C AGAATC AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC
*
32660786 AGAATC AGAAT- ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
32660821 GTGAATGCAA
Statistics
Matches: 145, Mismatches: 12, Indels: 34
0.76 0.06 0.18
Matches are distributed among these distances:
5 12 0.08
6 121 0.83
7 10 0.07
8 2 0.01
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:32660655 original size:30 final size:30
Alignment explanation
Indices: 32660621--32660796 Score: 157
Period size: 30 Copynumber: 5.8 Consensus size: 30
32660611 AAGAAACATT
* *
32660621 TCAGAATT-GGAACCAAAATGAGAATCAGAA
1 TCAGAATTAGGAA-CAGAATCAGAATCAGAA
* *
32660651 TCAGAATCAGTAACAGAATCAGAATCAGAA
1 TCAGAATTAGGAACAGAATCAGAATCAGAA
*
32660681 TCA-ATATTAGTAACAGAATCAGAATCAGAA
1 TCAGA-ATTAGGAACAGAATCAGAATCAGAA
*
32660711 TCAGAATTAGGTGACAGAATCAGAATCAGAA
1 TCAGAATTAGG-AACAGAATCAGAATCAGAA
* * *
32660742 TCAGTAA-CA-GAATCAGAATCAGTATTAGTAA
1 TCAG-AATTAGGAA-CAGAATCAGAATCAG-AA
*
32660773 -CAGAATCA-GAATCAGAATCAGAAT
1 TCAGAATTAGGAA-CAGAATCAGAAT
32660797 ACGTGACAGA
Statistics
Matches: 126, Mismatches: 12, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
29 4 0.03
30 91 0.72
31 29 0.23
32 2 0.02
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (30 bp):
TCAGAATTAGGAACAGAATCAGAATCAGAA
Found at i:32660975 original size:27 final size:26
Alignment explanation
Indices: 32660938--32661003 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
32660928 AGCATGGCTG
*
32660938 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
32660964 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
32660991 CCAGAATCAGATA
1 CCAGAA-CAGATA
32661004 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:32661008 original size:27 final size:27
Alignment explanation
Indices: 32660938--32661011 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
32660928 AGCATGGCTG
* *
32660938 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
32660964 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
32660991 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
32661012 AACCTACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:32661209 original size:22 final size:22
Alignment explanation
Indices: 32661177--32661234 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
32661167 TAAATACGTT
*
32661177 TGGCACGAAGCCATAGTCAAGA
1 TGGCACAAAGCCATAGTCAAGA
* * * *
32661199 TGGCACAAAGCCATATTTAGGT
1 TGGCACAAAGCCATAGTCAAGA
32661221 TGGCACAAAGCCAT
1 TGGCACAAAGCCAT
32661235 TAATAACGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.19
Consensus pattern (22 bp):
TGGCACAAAGCCATAGTCAAGA
Found at i:32661401 original size:27 final size:26
Alignment explanation
Indices: 32661322--32661403 Score: 101
Period size: 27 Copynumber: 3.1 Consensus size: 26
32661312 TCGATCGGTC
* * * *
32661322 AACAGATATTGTGACAGAGTCATCAA
1 AACAGATATTGTGGCAGAGCCACCAG
32661348 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
32661375 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
32661402 AA
1 AA
32661404 TGCTTCCTCC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 41 0.84
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.21
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:32661633 original size:27 final size:27
Alignment explanation
Indices: 32661603--32661797 Score: 221
Period size: 27 Copynumber: 7.3 Consensus size: 27
32661593 GGGGCAAAAT
* * *
32661603 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
32661630 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
32661657 GGTATTTTTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
32661684 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
32661711 GGTAA-TCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
32661737 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
32661764 GAAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
32661791 AGTAATT
1 GGTAATT
32661798 TCACAATCAA
Statistics
Matches: 140, Mismatches: 27, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
26 21 0.15
27 119 0.85
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:32661760 original size:80 final size:81
Alignment explanation
Indices: 32661605--32661797 Score: 244
Period size: 80 Copynumber: 2.4 Consensus size: 81
32661595 GGCAAAATGG
* * * * * * * *
32661605 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTTTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
32661670 TACAAGGGTATTTCGA
66 TACAAGGGTATTTCGA
* * *
32661686 TAATTCTACCCTACAGGGGTATTTTGGTAA-TCTATCCTATAAGGGTATTTCAGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
* *
32661750 TATAGGGGTATTTCGA
66 TACAAGGGTATTTCGA
* *
32661766 AAATTCTACCCTACAGGGGTATTTCAGTAATT
1 TAATTCTACCCTACAGGGGTATTTCGGTAATT
32661798 TCACAATCAA
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 69 0.73
81 26 0.27
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
TACAAGGGTATTTCGA
Found at i:32661822 original size:80 final size:80
Alignment explanation
Indices: 32661656--32661825 Score: 200
Period size: 80 Copynumber: 2.1 Consensus size: 80
32661646 AGGGGTATTT
* * * **
32661656 CGGTATTTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTGGTAATCTAT
1 CGGTAATTCTACCCTACAAGGGTATTTCGAAAATTCTACCCTACAGGGGTATTTCAGTAATCTAT
* ***
32661721 CCTATAAGGGTATTT
66 CCAATAAGGGTAAAA
* * *
32661736 CAGTAATTCTACCCTATAGGGGTATTTCGAAAATTCTACCCTACAGGGGTATTTCAGTAAT-T-T
1 CGGTAATTCTACCCTACAAGGGTATTTCGAAAATTCTACCCTACAGGGGTATTTCAGTAATCTAT
32661799 CACAATCAAGGGTAAAA
66 C-CAAT-AAGGGTAAAA
32661816 CGGTAATTCT
1 CGGTAATTCT
32661826 GTAAATTGAG
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 2 0.03
79 4 0.05
80 69 0.92
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (80 bp):
CGGTAATTCTACCCTACAAGGGTATTTCGAAAATTCTACCCTACAGGGGTATTTCAGTAATCTAT
CCAATAAGGGTAAAA
Found at i:32662336 original size:27 final size:27
Alignment explanation
Indices: 32661802--32662325 Score: 642
Period size: 27 Copynumber: 19.4 Consensus size: 27
32661792 GTAATTTCAC
*
32661802 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
32661829 AATTGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
32661856 AA-CTGAGGGT-AAACTAGTAATTCTGTA
1 AATC-GAGGGTAAAAC-GGTAATTCTGTA
* * **
32661883 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
32661910 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
32661937 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
32661964 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
32661991 AATTGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
32662018 AATTGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
32662045 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
32662072 AATCGAGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
32662099 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
32662126 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
32662153 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
32662180 AATCAAGTGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
32662207 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
32662234 AATCGAGGGTAAAACGGCAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
32662261 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
32662288 AATCGAGGGTGAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
32662315 AATCGAGGGTA
1 AATCGAGGGTA
32662326 CTTTGGTAAT
Statistics
Matches: 428, Mismatches: 61, Indels: 16
0.85 0.12 0.03
Matches are distributed among these distances:
26 6 0.01
27 416 0.97
28 6 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:32664102 original size:15 final size:15
Alignment explanation
Indices: 32664028--32664105 Score: 86
Period size: 15 Copynumber: 5.2 Consensus size: 15
32664018 AGAAAACCGA
32664028 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
32664043 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
*
32664057 AATAAAGAAATCCAAA
1 -ATAAAGAAATCCAAG
*
32664073 ATAAAGAGATCCAAG
1 ATAAAGAAATCCAAG
*
32664088 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
32664103 ATA
1 ATA
32664106 CGATACTATG
Statistics
Matches: 50, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
14 3 0.06
15 45 0.90
16 2 0.04
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:32667140 original size:93 final size:93
Alignment explanation
Indices: 32667028--32667199 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
32667018 GCCCATAAGT
* * *
32667028 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCAGACTCAACTCAA
32667093 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
32667121 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
32667186 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
32667200 CAAATATCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:32667195 original size:46 final size:46
Alignment explanation
Indices: 32667020--32667195 Score: 219
Period size: 46 Copynumber: 3.8 Consensus size: 46
32667010 TGTAACCCGC
* *
32667020 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* * *
32667066 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCGCAT
* *** *
32667112 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* *
32667159 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
32667196 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
46 73 0.67
47 36 0.33
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:32675744 original size:145 final size:145
Alignment explanation
Indices: 32675562--32675838 Score: 527
Period size: 145 Copynumber: 1.9 Consensus size: 145
32675552 TGTTGAACTA
32675562 GATTATGTGCGATATTGATAGCAGACTTATTATCGCAATACAACTTCATTGGACCTTCCCACTTG
1 GATTATGTGCGATATTGATAGCAGACTTATTATCGCAATACAACTTCATTGGACCTTCCCACTTG
* *
32675627 ATCTTCAAGTCTTCTAATATAATCTTTAGTCATAACAACTCACAAACTCCAAGAGCCATTGCCCT
66 ATCTTCAAGTCTTCCAATATAATCTTTAGCCATAACAACTCACAAACTCCAAGAGCCATTGCCCT
32675692 AATCACGTTGAGGTG
131 AATCACGTTGAGGTG
*
32675707 GATTATGTGTGATATTGATAGCAGACTTATTATCGCAATACAACTTCATTGGACCTTCCCACTTG
1 GATTATGTGCGATATTGATAGCAGACTTATTATCGCAATACAACTTCATTGGACCTTCCCACTTG
32675772 ATCTTCAAGTCTTCCAATATAATCTTTAGCCATAACAACTCACAAACTCCAAGAGCCATTGCCCT
66 ATCTTCAAGTCTTCCAATATAATCTTTAGCCATAACAACTCACAAACTCCAAGAGCCATTGCCCT
32675837 AA
131 AA
32675839 ATTCAGCTTC
Statistics
Matches: 129, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
145 129 1.00
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.31
Consensus pattern (145 bp):
GATTATGTGCGATATTGATAGCAGACTTATTATCGCAATACAACTTCATTGGACCTTCCCACTTG
ATCTTCAAGTCTTCCAATATAATCTTTAGCCATAACAACTCACAAACTCCAAGAGCCATTGCCCT
AATCACGTTGAGGTG
Found at i:32677450 original size:21 final size:21
Alignment explanation
Indices: 32677421--32677461 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
32677411 TGCTGGACAG
*
32677421 GAGCCGGAATGGGAGTGTTTA
1 GAGCCGGAATGAGAGTGTTTA
*
32677442 GAGCTGGAATGAGAGTGTTT
1 GAGCCGGAATGAGAGTGTTT
32677462 GGTTGCTGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.07, G:0.41, T:0.27
Consensus pattern (21 bp):
GAGCCGGAATGAGAGTGTTTA
Found at i:32680774 original size:17 final size:16
Alignment explanation
Indices: 32680752--32680783 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
32680742 TTCAGGACAA
32680752 ATGTTGTTCAAGAATAG
1 ATGTTGTTC-AGAATAG
32680769 ATGTTGTTCAGAATA
1 ATGTTGTTCAGAATA
32680784 ACCTCTACCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.38
Consensus pattern (16 bp):
ATGTTGTTCAGAATAG
Found at i:32684508 original size:67 final size:65
Alignment explanation
Indices: 32684393--32684524 Score: 183
Period size: 67 Copynumber: 2.0 Consensus size: 65
32684383 TTGGAAACTC
* * **
32684393 AATCAAGATAAATACTAAACTGTAATTATGACAAAAAGTCATTTAAATCTTACACTCACATTTTC
1 AATCAAGAAAAATACTAAACTGTAATTATGACAAAAAGCCATACAAATCTTACA--CACATTTTC
32684458 TT
64 TT
* * *
32684460 AATCAAGAAAAATATTAAACTGTAATTTTGGCAAAAAGCCATACAAATCTTACACACATTTTCTT
1 AATCAAGAAAAATACTAAACTGTAATTATGACAAAAAGCCATACAAATCTTACACACATTTTCTT
32684525 TCTGCAAGCA
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
65 11 0.19
67 47 0.81
ACGTcount: A:0.44, C:0.17, G:0.07, T:0.33
Consensus pattern (65 bp):
AATCAAGAAAAATACTAAACTGTAATTATGACAAAAAGCCATACAAATCTTACACACATTTTCTT
Found at i:32686776 original size:16 final size:17
Alignment explanation
Indices: 32686755--32686786 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
32686745 CACCTTCTTT
32686755 TTTTTCT-TTTTTTTTC
1 TTTTTCTCTTTTTTTTC
32686771 TTTTTCTCTTTTTTTT
1 TTTTTCTCTTTTTTTT
32686787 TTCTTAGGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (17 bp):
TTTTTCTCTTTTTTTTC
Found at i:32686780 original size:18 final size:18
Alignment explanation
Indices: 32686753--32686787 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
32686743 AACACCTTCT
*
32686753 TTTTTTTCTTTTTTTTTC
1 TTTTTCTCTTTTTTTTTC
32686771 TTTTTCTCTTTTTTTTT
1 TTTTTCTCTTTTTTTTT
32686788 TCTTAGGGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (18 bp):
TTTTTCTCTTTTTTTTTC
Found at i:32689998 original size:57 final size:58
Alignment explanation
Indices: 32689914--32690028 Score: 196
Period size: 57 Copynumber: 2.0 Consensus size: 58
32689904 TTTGCATGAA
*
32689914 TTACTAGGTAAAAAGTACAGTAGATAACTTTATATTTTAGAGTTATCATTTGGTTCAT
1 TTACTAGGTAAAAAGTACAGTAGATAACTCTATATTTTAGAGTTATCATTTGGTTCAT
* *
32689972 TTACTA-GTTAAAAGTACCGTAGATAACTCTATATTTTAGAGTTATCATTTGGTTCAT
1 TTACTAGGTAAAAAGTACAGTAGATAACTCTATATTTTAGAGTTATCATTTGGTTCAT
32690029 GTTGTTCAAG
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
57 48 0.89
58 6 0.11
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (58 bp):
TTACTAGGTAAAAAGTACAGTAGATAACTCTATATTTTAGAGTTATCATTTGGTTCAT
Found at i:32692051 original size:22 final size:22
Alignment explanation
Indices: 32692025--32692066 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
32692015 ACCATGTAGA
**
32692025 AGGAGACACACGGTCGTGTTGG
1 AGGAGACACACAATCGTGTTGG
32692047 AGGAGACACACAATCGTGTT
1 AGGAGACACACAATCGTGTT
32692067 CTAAGACCGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.29, C:0.19, G:0.33, T:0.19
Consensus pattern (22 bp):
AGGAGACACACAATCGTGTTGG
Found at i:32692300 original size:21 final size:21
Alignment explanation
Indices: 32692274--32692313 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
32692264 TAAAAACACA
*
32692274 TCAAAAGTATGCCAAATCATG
1 TCAAAAGTATACCAAATCATG
*
32692295 TCAAAATTATACCAAATCA
1 TCAAAAGTATACCAAATCA
32692314 CAATCAACCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.47, C:0.20, G:0.07, T:0.25
Consensus pattern (21 bp):
TCAAAAGTATACCAAATCATG
Found at i:32696107 original size:17 final size:18
Alignment explanation
Indices: 32696060--32696113 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 18
32696050 ATAGCTCATC
* *
32696060 AGAATTGTGAGCCCACCA
1 AGAACTGTGAGCTCACCA
*
32696078 AGAACTATGAGCTCACCA
1 AGAACTGTGAGCTCACCA
*
32696096 AGATC-GTGAGCTCACCA
1 AGAACTGTGAGCTCACCA
32696113 A
1 A
32696114 CACTGCAAGC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
17 12 0.39
18 19 0.61
ACGTcount: A:0.35, C:0.28, G:0.20, T:0.17
Consensus pattern (18 bp):
AGAACTGTGAGCTCACCA
Found at i:32696141 original size:17 final size:18
Alignment explanation
Indices: 32696103--32696145 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
32696093 CCAAGATCGT
32696103 GAGCTCACCAACACTGCA
1 GAGCTCACCAACACTGCA
32696121 -AGCTCACCAA-ACATG-A
1 GAGCTCACCAACAC-TGCA
32696137 GAGCTCACC
1 GAGCTCACC
32696146 TACGAGCTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 3 0.13
17 20 0.87
ACGTcount: A:0.35, C:0.37, G:0.16, T:0.12
Consensus pattern (18 bp):
GAGCTCACCAACACTGCA
Found at i:32703948 original size:14 final size:14
Alignment explanation
Indices: 32703929--32703957 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
32703919 TCTCATAATC
32703929 TATAAATTTTGAGG
1 TATAAATTTTGAGG
32703943 TATAAATTTTGAGG
1 TATAAATTTTGAGG
32703957 T
1 T
32703958 GTATCTGTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45
Consensus pattern (14 bp):
TATAAATTTTGAGG
Found at i:32707077 original size:38 final size:38
Alignment explanation
Indices: 32707029--32707152 Score: 194
Period size: 38 Copynumber: 3.3 Consensus size: 38
32707019 GGCTCAAAGG
* * *
32707029 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
32707067 CCCGGATATAATACTAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
32707105 CCCGGATATATTAGCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
32707143 CCCGGATATA
1 CCCGGATATA
32707153 CATCAAATAT
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 79 1.00
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.21
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:32710421 original size:3 final size:3
Alignment explanation
Indices: 32710413--32710457 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
32710403 TCACTCATCT
32710413 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
32710458 TAATAATAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.33, G:0.00, T:0.00
Consensus pattern (3 bp):
CAA
Found at i:32711437 original size:32 final size:30
Alignment explanation
Indices: 32711400--32711481 Score: 94
Period size: 32 Copynumber: 2.6 Consensus size: 30
32711390 ATTATTTAAT
*
32711400 TAATAAATATCT-TTTAACTTAATAATAATAAG
1 TAATAAATATCTATTT-ACTT-A-AATAATAAA
32711432 TAATAAATATCTATTTACTTAAATAATAAA
1 TAATAAATATCTATTTACTTAAATAATAAA
*
32711462 TAATTAAATATTTATGTTAC
1 TAA-TAAATATCTAT-TTAC
32711482 AATTATATTC
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
30 11 0.24
31 11 0.24
32 20 0.44
33 3 0.07
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (30 bp):
TAATAAATATCTATTTACTTAAATAATAAA
Found at i:32713905 original size:17 final size:18
Alignment explanation
Indices: 32713885--32713926 Score: 70
Period size: 17 Copynumber: 2.4 Consensus size: 18
32713875 CAAAATAGTA
32713885 AGCTCACCTA-AACTGCG
1 AGCTCACCTATAACTGCG
32713902 AGCTCA-CTATAACTGCG
1 AGCTCACCTATAACTGCG
32713919 AGCTCACC
1 AGCTCACC
32713927 AAAATGTGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.13
17 19 0.83
18 1 0.04
ACGTcount: A:0.29, C:0.36, G:0.17, T:0.19
Consensus pattern (18 bp):
AGCTCACCTATAACTGCG
Found at i:32719397 original size:21 final size:21
Alignment explanation
Indices: 32719373--32719420 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
32719363 AGCCACTGTG
32719373 TTTCCTGTTTTGGAACCTATT
1 TTTCCTGTTTTGGAACCTATT
* *
32719394 TTTCCTGTTTTGGAACTTGTT
1 TTTCCTGTTTTGGAACCTATT
32719415 TTTCCT
1 TTTCCT
32719421 ATCTCCACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.10, C:0.19, G:0.15, T:0.56
Consensus pattern (21 bp):
TTTCCTGTTTTGGAACCTATT
Found at i:32720311 original size:14 final size:14
Alignment explanation
Indices: 32720292--32720321 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
32720282 GTCATTTAGG
32720292 CCAACCAAACTGGC
1 CCAACCAAACTGGC
32720306 CCAACCAAACTGGC
1 CCAACCAAACTGGC
32720320 CC
1 CC
32720322 GGTGATTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.47, G:0.13, T:0.07
Consensus pattern (14 bp):
CCAACCAAACTGGC
Found at i:32725436 original size:14 final size:14
Alignment explanation
Indices: 32725417--32725446 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
32725407 GTCATTTAGG
32725417 CCAACCAAACTGGC
1 CCAACCAAACTGGC
32725431 CCAACCAAACTGGC
1 CCAACCAAACTGGC
32725445 CC
1 CC
32725447 GGTGATTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.47, G:0.13, T:0.07
Consensus pattern (14 bp):
CCAACCAAACTGGC
Found at i:32735577 original size:25 final size:25
Alignment explanation
Indices: 32735548--32735597 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
32735538 TATATAAAAG
32735548 TTAACTTTAATGTATGTATATTATA
1 TTAACTTTAATGTATGTATATTATA
32735573 TTAACTTTAATGTATGTATATTATA
1 TTAACTTTAATGTATGTATATTATA
32735598 ATAAAAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.04, G:0.08, T:0.52
Consensus pattern (25 bp):
TTAACTTTAATGTATGTATATTATA
Found at i:32736860 original size:20 final size:19
Alignment explanation
Indices: 32736805--32736852 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
32736795 ATGTCAGAGT
* *
32736805 TGAGAAATG-ATTATGAGA
1 TGAGAAATGAAATATGAAA
32736823 TGAGAAATGAAATATGAAA
1 TGAGAAATGAAATATGAAA
32736842 TGATGAAATGA
1 TGA-GAAATGA
32736853 GATGTGAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 9 0.35
19 10 0.38
20 7 0.27
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (19 bp):
TGAGAAATGAAATATGAAA
Found at i:32738242 original size:45 final size:45
Alignment explanation
Indices: 32738192--32738285 Score: 111
Period size: 45 Copynumber: 2.1 Consensus size: 45
32738182 GCTTATTGTT
* *
32738192 TTCAGCTC-ATTAAAGCTTACCGTTTTAGCTCA-TATGAGATTACTG
1 TTCAGCTCGA-TAAAGCTTACCATTTCAGCTCATTA-GAGATTACTG
* * *
32738237 TTCAGCTCGATAGAGCTTACCATTTCATCTCATTAGAGCTTACTG
1 TTCAGCTCGATAAAGCTTACCATTTCAGCTCATTAGAGATTACTG
32738282 TTCA
1 TTCA
32738286 TCAACTCAGA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
45 39 0.93
46 3 0.07
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (45 bp):
TTCAGCTCGATAAAGCTTACCATTTCAGCTCATTAGAGATTACTG
Found at i:32746503 original size:46 final size:46
Alignment explanation
Indices: 32746453--32746625 Score: 206
Period size: 46 Copynumber: 3.7 Consensus size: 46
32746443 TGATTGAGCA
32746453 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * * * *
32746499 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGGTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ATG
*
32746546 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
32746592 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
32746626 GGGTCGGGTC
Statistics
Matches: 104, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
45 1 0.01
46 66 0.63
47 36 0.35
48 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:32746611 original size:93 final size:93
Alignment explanation
Indices: 32746452--32746620 Score: 302
Period size: 93 Copynumber: 1.8 Consensus size: 93
32746442 ATGATTGAGC
* * *
32746452 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGTTG
32746517 AGTCCGAGTTCGTGAAATGTAACTAGGT
66 AGTCCGAGTTCGTGAAATGTAACTAGGT
*
32746545 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGTTG
32746610 AGTCCGAGTTC
66 AGTCCGAGTTC
32746621 ACTTAGGGTC
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGTTG
AGTCCGAGTTCGTGAAATGTAACTAGGT
Found at i:32754124 original size:47 final size:48
Alignment explanation
Indices: 32753979--32754124 Score: 147
Period size: 46 Copynumber: 3.1 Consensus size: 48
32753969 ACTAGCTTGT
* * *
32753979 ATATCGCGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTC
1 ATATCTCGAGGCTGATGCATGTCCCAGACATGTCTTACACTAGCTCAC
* * * * * * *
32754027 --GTCTCAATG-TCGATGCATGTCCCAGACATGTCTTACATTGGCTTAA
1 ATATCTCGAGGCT-GATGCATGTCCCAGACATGTCTTACACTAGCTCAC
* *
32754073 ATATCTCGAGGCTGATG-ATGTCCCAGACATGTCTGACACTAGCACAC
1 ATATCTCGAGGCTGATGCATGTCCCAGACATGTCTTACACTAGCTCAC
32754120 ATATC
1 ATATC
32754125 ACCCATTATC
Statistics
Matches: 75, Mismatches: 19, Indels: 9
0.73 0.18 0.09
Matches are distributed among these distances:
46 35 0.47
47 29 0.39
48 10 0.13
49 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (48 bp):
ATATCTCGAGGCTGATGCATGTCCCAGACATGTCTTACACTAGCTCAC
Found at i:32759776 original size:55 final size:53
Alignment explanation
Indices: 32759624--32759827 Score: 192
Period size: 53 Copynumber: 3.8 Consensus size: 53
32759614 CTTTTTAAAC
*
32759624 TTATCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAAT
1 TTATCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAT
* * * * * * * *
32759677 TCACCATTTCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCGTAGT
1 TTATCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G-AAT
* * * * * * *
32759732 TTATCAATGCCATGTCTTGACATGGTCTTTCATGATTTCCTTGCCTTGTAAAAA
1 TTATCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAAT
* * * * *
32759786 TTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 TTATCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTT
32759828 AAAGCCTAAT
Statistics
Matches: 117, Mismatches: 32, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
53 41 0.35
54 37 0.32
55 39 0.33
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.40
Consensus pattern (53 bp):
TTATCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAT
Found at i:32763082 original size:22 final size:22
Alignment explanation
Indices: 32763031--32763074 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
32763021 TCAATCCATT
32763031 CAAACTTGACATCTTTCTGTAG
1 CAAACTTGACATCTTTCTGTAG
32763053 CAAACTTGACATCTTTCTGTAG
1 CAAACTTGACATCTTTCTGTAG
32763075 AATTCTTGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (22 bp):
CAAACTTGACATCTTTCTGTAG
Found at i:32776423 original size:28 final size:29
Alignment explanation
Indices: 32776369--32776426 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 29
32776359 ACAGGGGTTT
* *
32776369 TTCACATGGCCAGGCACACGCCCGTGTCC
1 TTCACACGGCCACGCACACGCCCGTGTCC
*
32776398 TTCACACGGCCACG-ACACGCTCGTGTCC
1 TTCACACGGCCACGCACACGCCCGTGTCC
32776426 T
1 T
32776427 AGCCCGTGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 14 0.54
29 12 0.46
ACGTcount: A:0.17, C:0.41, G:0.22, T:0.19
Consensus pattern (29 bp):
TTCACACGGCCACGCACACGCCCGTGTCC
Found at i:32777445 original size:47 final size:48
Alignment explanation
Indices: 32777376--32777638 Score: 258
Period size: 47 Copynumber: 5.6 Consensus size: 48
32777366 GTAAGGTGCT
* *
32777376 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCGCAA-GTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGGCC
* * * *
32777423 GATGCCATGTCCTAGACATGGTCTTACATTGACT-ATCATCTCGTA-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-CATCTC-AAGGCC
* * *
32777471 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCAAGGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGGCC
* * * * * *
32777517 GATG-CATATCCTAGACAT-GTCTTACACTAGCTCTCGTCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGGCC
* * **
32777563 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-CTCAAGGCC
32777611 GATG-CATGTCCCAGACAT-GTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
32777639 AGCCAACAAC
Statistics
Matches: 182, Mismatches: 27, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
45 1 0.01
46 73 0.40
47 76 0.42
48 31 0.17
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGGCC
Found at i:32777572 original size:93 final size:95
Alignment explanation
Indices: 32777376--32777597 Score: 303
Period size: 93 Copynumber: 2.4 Consensus size: 95
32777366 GTAAGGTGCT
*
32777376 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCGCAAGTCGATGCCATGTCCTAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCGCAAGTCGATGCCATATCCTAGACA
* *
32777441 TGGTCTTACATTGACTATCATCTCGTAGCC
66 TGGTCTTACATAGACTATCATCTCATAGCC
* * *
32777471 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCAAGGTCGATG-CATATCCTAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCGCAA-GTCGATGCCATATCCTAGAC
* *
32777533 AT-GTCTTACACTAG-CTCTCGTCTCA-ATGCC
65 ATGGTCTTACA-TAGACTATCATCTCATA-GCC
32777563 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC
32777598 TCATAATGTG
Statistics
Matches: 113, Mismatches: 9, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
91 1 0.01
92 23 0.20
93 50 0.44
94 35 0.31
95 4 0.04
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (95 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCGCAAGTCGATGCCATATCCTAGACA
TGGTCTTACATAGACTATCATCTCATAGCC
Found at i:32777614 original size:94 final size:93
Alignment explanation
Indices: 32777376--32777641 Score: 298
Period size: 94 Copynumber: 2.8 Consensus size: 93
32777366 GTAAGGTGCT
*
32777376 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCGCAAGT--CGATGCCATGTCCTAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT--CAAGTGGCGATG-CATGTCCTAGA
* *
32777439 CATGGTCTTACA-TTGACTATCATCTCGTAGCC
63 CAT-GTCTTACACTAG-CTATCATCTCATAGCC
* *
32777471 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTC-TCAAG-GTCGATGCATATCCTAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC-T-C-TCATCAAGTGGCGATGCATGTCCTAGA
* *
32777532 CATGTCTTACACTAGCTCTCGTCTCA-ATGCC
63 CATGTCTTACACTAGCTATCATCTCATA-GCC
*
32777563 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-AATGTGGCCGATGCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCAA-GTGG-CGATGCATGTCCTAGAC
32777627 ATGTCTTACACTAGC
64 ATGTCTTACACTAGC
32777642 CAACAACAAC
Statistics
Matches: 149, Mismatches: 9, Indels: 27
0.81 0.05 0.15
Matches are distributed among these distances:
91 5 0.03
92 26 0.17
93 48 0.32
94 63 0.42
95 6 0.04
96 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (93 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCAAGTGGCGATGCATGTCCTAGACAT
GTCTTACACTAGCTATCATCTCATAGCC
Found at i:32787240 original size:18 final size:18
Alignment explanation
Indices: 32787214--32787274 Score: 86
Period size: 18 Copynumber: 3.4 Consensus size: 18
32787204 CAAGGTCACG
32787214 ATCAATAGCGTCACTATC
1 ATCAATAGCGTCACTATC
* * *
32787232 ATAAATAGCATCACTAGC
1 ATCAATAGCGTCACTATC
*
32787250 ATCAATATCGTCACTATC
1 ATCAATAGCGTCACTATC
32787268 ATCAATA
1 ATCAATA
32787275 AGAAAACCTT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.39, C:0.25, G:0.08, T:0.28
Consensus pattern (18 bp):
ATCAATAGCGTCACTATC
Found at i:32792270 original size:26 final size:26
Alignment explanation
Indices: 32792241--32792292 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
32792231 GAACAAGTTA
*
32792241 AATGAATAAATTGTCCGATTTGGAGT
1 AATGAATAAATTGTCCGATTCGGAGT
32792267 AATGAATAAATTGTCCGATTCGGAGT
1 AATGAATAAATTGTCCGATTCGGAGT
32792293 CAAATTAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.33
Consensus pattern (26 bp):
AATGAATAAATTGTCCGATTCGGAGT
Found at i:32795165 original size:21 final size:21
Alignment explanation
Indices: 32795136--32795175 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
32795126 AACTGAGAAC
32795136 ACACAATAAACCAAAACTAAT
1 ACACAATAAACCAAAACTAAT
*
32795157 ACACGATAAACCAAAACTA
1 ACACAATAAACCAAAACTA
32795176 CGCTAGAACG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.60, C:0.25, G:0.03, T:0.12
Consensus pattern (21 bp):
ACACAATAAACCAAAACTAAT
Found at i:32809264 original size:22 final size:21
Alignment explanation
Indices: 32809231--32809271 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
32809221 TTATTGTTAT
*
32809231 TTTAAAAAATTATATATAATA
1 TTTAAAAAATTAAATATAATA
*
32809252 TTTATAAATATTAAATATAA
1 TTTA-AAAAATTAAATATAA
32809272 AATATTAATC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
TTTAAAAAATTAAATATAATA
Found at i:32812990 original size:8 final size:7
Alignment explanation
Indices: 32812973--32813099 Score: 80
Period size: 7 Copynumber: 18.0 Consensus size: 7
32812963 ATTAATTAAT
32812973 CTAAACC
1 CTAAACC
32812980 CTAAACTC
1 CTAAAC-C
*
32812988 CTAATCC
1 CTAAACC
*
32812995 CTAATCC
1 CTAAACC
*
32813002 CTAATCC
1 CTAAACC
*
32813009 CTAATCC
1 CTAAACC
32813016 CTAAACC
1 CTAAACC
*
32813023 ATAAACC
1 CTAAACC
* *
32813030 TTAAATC
1 CTAAACC
*
32813037 CTAAAAC
1 CTAAACC
*
32813044 ATAAACC
1 CTAAACC
* *
32813051 CT-TACA
1 CTAAACC
*
32813057 CTGAACCC
1 CT-AAACC
*
32813065 CTAACCC
1 CTAAACC
32813072 CT-AACC
1 CTAAACC
32813078 CTTAAACC
1 C-TAAACC
32813086 CT-AACC
1 CTAAACC
32813092 CTTAAACC
1 C-TAAACC
32813100 ATAATCATAA
Statistics
Matches: 97, Mismatches: 16, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
6 13 0.13
7 66 0.68
8 18 0.19
ACGTcount: A:0.38, C:0.39, G:0.01, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:32813112 original size:21 final size:23
Alignment explanation
Indices: 32813088--32813141 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 23
32813078 CTTAAACCCT
32813088 AACCCTTAAACCA-TAA-TCATA
1 AACCCTTAAACCAGTAACTCATA
* *
32813109 AACCTTTAAA-TAGTAACTCATA
1 AACCCTTAAACCAGTAACTCATA
32813131 AA-CCTTAAACC
1 AACCCTTAAACC
32813142 CTTAACCATA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
20 1 0.04
21 18 0.69
22 7 0.27
ACGTcount: A:0.46, C:0.26, G:0.02, T:0.26
Consensus pattern (23 bp):
AACCCTTAAACCAGTAACTCATA
Found at i:32813151 original size:21 final size:21
Alignment explanation
Indices: 32813014--32813151 Score: 52
Period size: 21 Copynumber: 6.6 Consensus size: 21
32813004 AATCCCTAAT
*
32813014 CCCTAAACCATAAACCTTAAA
1 CCCTTAACCATAAACCTTAAA
* * *
32813035 TCCTAAAACATAAACCCTT--A
1 CCCTTAACCATAAA-CCTTAAA
* * * * *
32813055 CACTGAACCCCTAACCCCT-AA
1 CCCTTAA-CCATAAACCTTAAA
* *
32813076 CCCTTAAACCCTAACCCTTAAA
1 CCCTT-AACCATAAACCTTAAA
* *
32813098 -CCATAATCATAAACCTTTAAA
1 CCCTTAACCATAAACC-TTAAA
***
32813119 -TAGTAACTCATAAACCTTAAA
1 CCCTTAAC-CATAAACCTTAAA
32813140 CCCTTAACCATA
1 CCCTTAACCATA
32813152 TGCCCTAAAT
Statistics
Matches: 86, Mismatches: 23, Indels: 16
0.69 0.18 0.13
Matches are distributed among these distances:
20 16 0.19
21 50 0.58
22 20 0.23
ACGTcount: A:0.42, C:0.33, G:0.01, T:0.23
Consensus pattern (21 bp):
CCCTTAACCATAAACCTTAAA
Found at i:32813622 original size:12 final size:12
Alignment explanation
Indices: 32813605--32813632 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
32813595 TTTTTCAATC
32813605 AAACGCCGCTAA
1 AAACGCCGCTAA
32813617 AAACGCCGCTAA
1 AAACGCCGCTAA
32813629 AAAC
1 AAAC
32813633 CTGTTTTACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.32, G:0.14, T:0.07
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:32820663 original size:29 final size:29
Alignment explanation
Indices: 32820618--32820698 Score: 94
Period size: 29 Copynumber: 2.8 Consensus size: 29
32820608 GGCTTGGAAT
*
32820618 TGATTAGGGCC-AGATGGGTCATATAAATG
1 TGATTTGGGCCTA-ATGGGTCATATAAATG
* *
32820647 TGATTTGGGCCTAATGGGCCATATGAATG
1 TGATTTGGGCCTAATGGGTCATATAAATG
* *
32820676 AGA-TTGGGCCTAATGGGTTATAT
1 TGATTTGGGCCTAATGGGTCATAT
32820699 GCATGTATGT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
28 18 0.40
29 26 0.58
30 1 0.02
ACGTcount: A:0.27, C:0.11, G:0.31, T:0.31
Consensus pattern (29 bp):
TGATTTGGGCCTAATGGGTCATATAAATG
Found at i:32820698 original size:28 final size:29
Alignment explanation
Indices: 32820631--32820699 Score: 95
Period size: 28 Copynumber: 2.4 Consensus size: 29
32820621 TTAGGGCCAG
* *
32820631 ATGGGTCATATAAATGTGATTTGGGCCTA
1 ATGGGTCATATGAATGAGATTTGGGCCTA
*
32820660 ATGGGCCATATGAATGAGA-TTGGGCCTA
1 ATGGGTCATATGAATGAGATTTGGGCCTA
*
32820688 ATGGGTTATATG
1 ATGGGTCATATG
32820700 CATGTATGTA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
28 19 0.54
29 16 0.46
ACGTcount: A:0.28, C:0.10, G:0.30, T:0.32
Consensus pattern (29 bp):
ATGGGTCATATGAATGAGATTTGGGCCTA
Found at i:32826130 original size:44 final size:44
Alignment explanation
Indices: 32826081--32826169 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
32826071 CGACTTGAAA
32826081 CTCAATCTCTTTTCTTTTCAAATCAGCATATGACTTTTGCCTAT
1 CTCAATCTCTTTTCTTTTCAAATCAGCATATGACTTTTGCCTAT
32826125 CTCAATCTCTTTTCTTTTCAAATCAGCATATGACTTTTGCCTAT
1 CTCAATCTCTTTTCTTTTCAAATCAGCATATGACTTTTGCCTAT
32826169 C
1 C
32826170 CGATGCCGCT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.22, C:0.26, G:0.07, T:0.45
Consensus pattern (44 bp):
CTCAATCTCTTTTCTTTTCAAATCAGCATATGACTTTTGCCTAT
Found at i:32835397 original size:49 final size:47
Alignment explanation
Indices: 32835325--32835456 Score: 149
Period size: 48 Copynumber: 2.7 Consensus size: 47
32835315 GTGTAATGCT
* *
32835325 GATGCCACGTCCCAAACATGGTCTTACACTGACTA-TCAAAATCGGGACC
1 GATGCCATGTCCCAGACATGGTCTTACACTGAC-ACTC-AAATCGGG-CC
* *** *
32835374 GATGCCATGTCCTAGACATGGTCTTACACTGACACCTCTCTTCGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACA-CTCAAATCGGGCC
*
32835422 AATGCCATGTCCCAGACATGGTCTTACACTGACAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACAC
32835457 ATCTCGTAGC
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
47 1 0.01
48 35 0.49
49 34 0.47
50 2 0.03
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACACTCAAATCGGGCC
Found at i:32842798 original size:45 final size:46
Alignment explanation
Indices: 32842684--32842808 Score: 139
Period size: 48 Copynumber: 2.7 Consensus size: 46
32842674 AAAATCAGGA
* ** *
32842684 CTGATGCCTTGTCCCAAATGTGGTCTTACACTAACACCTCTATTCGTG
1 CTGATGCCATGTCCCAAACATGGTCTTACACTAACACATC--TTCGTG
* * *
32842732 CCGATGCCATGTCCCAGACATGGTCTTACACTGACACATC-TCGTAG
1 CTGATGCCATGTCCCAAACATGGTCTTACACTAACACATCTTCGT-G
32842778 CTGATG-CATGTCCCAAACAT-GTCTTACACTA
1 CTGATGCCATGTCCCAAACATGGTCTTACACTA
32842809 GCTCTTGTTT
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
44 10 0.15
45 17 0.26
46 6 0.09
48 33 0.50
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (46 bp):
CTGATGCCATGTCCCAAACATGGTCTTACACTAACACATCTTCGTG
Found at i:32842897 original size:46 final size:44
Alignment explanation
Indices: 32842730--32842902 Score: 154
Period size: 46 Copynumber: 3.8 Consensus size: 44
32842720 CCTCTATTCG
* *
32842730 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTA
1 TGCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCAC-TCT-ATA
* * * * * *
32842777 -GCTGATG-CATGTCCCAAACATGTCTTACACTAGCTCTTGTTTCAA
1 TGCCGATGCCATGTCCCAGACATGTCTTACACTGGCAC-TCTAT--A
* *
32842822 TGTCGATGCCATGTCCCAGACATGGCTTACACTGGCACTCATAATA
1 TGCCGATGCCATGTCCCAGACATGTCTTACACTGGCACTC-T-ATA
32842868 TGGCCGATG-CATGTCCCAGACATGTCTTACACTGG
1 T-GCCGATGCCATGTCCCAGACATGTCTTACACTGG
32842903 TACACAAATA
Statistics
Matches: 101, Mismatches: 18, Indels: 15
0.75 0.13 0.11
Matches are distributed among these distances:
43 1 0.01
44 14 0.14
45 14 0.14
46 39 0.39
47 32 0.32
48 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (44 bp):
TGCCGATGCCATGTCCCAGACATGTCTTACACTGGCACTCTATA
Found at i:32842900 original size:93 final size:92
Alignment explanation
Indices: 32842634--32842900 Score: 254
Period size: 93 Copynumber: 2.8 Consensus size: 92
32842624 TAACCATTAA
* * * * *
32842634 GTCGATGCCATGTCCTAGACATGGTCTTACACTGAC-TATCAAAATCAGGACTGATGCCTTGTCC
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACACATC-TAAT-A-G-CCGATG-CATGTCC
** * * * * *
32842698 CAAATGTGGTCTTACACTAACACCTCTATTC-GT
61 CAAACAT-GTCTTACACTAGCTCTTGT-TTCAAT
* ** *
32842731 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGCTGATGCATGTCCCAAAC
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTAATAGCCGATGCATGTCCCAAAC
32842796 ATGTCTTACACTAGCTCTTGTTTCAAT
66 ATGTCTTACACTAGCTCTTGTTTCAAT
*
32842823 GTCGATGCCATGTCCCAGACATGG-CTTACACTGGCAC-TCATAATATGGCCGATGCATGTCCCA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACACATC-TAATA--GCCGATGCATGTCCCA
*
32842886 GACATGTCTTACACT
63 AACATGTCTTACACT
32842901 GGTACACAAA
Statistics
Matches: 145, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
90 2 0.01
91 18 0.12
92 39 0.27
93 40 0.28
94 6 0.04
95 1 0.01
96 1 0.01
97 35 0.24
98 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (92 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTAATAGCCGATGCATGTCCCAAAC
ATGTCTTACACTAGCTCTTGTTTCAAT
Found at i:32854805 original size:14 final size:14
Alignment explanation
Indices: 32854786--32854813 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32854776 GGAATTGGGT
32854786 TTTCTCCTTTAAAA
1 TTTCTCCTTTAAAA
32854800 TTTCTCCTTTAAAA
1 TTTCTCCTTTAAAA
32854814 CTTTAAACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (14 bp):
TTTCTCCTTTAAAA
Found at i:32857766 original size:27 final size:27
Alignment explanation
Indices: 32857747--32857927 Score: 218
Period size: 27 Copynumber: 6.7 Consensus size: 27
32857737 CCTTATGTGA
* *
32857747 TAAAATGATCGAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCCTTATAGGG
*
32857774 TAAAATGACCGAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCCTTATAGGG
* * * *
32857801 TAGAATGACCAAAATACCCCTGTAGGG
1 TAAAATGACCGAAATACCCTTATAGGG
32857828 TAAAATGACCGAAATACCCTTATAGGG
1 TAAAATGACCGAAATACCCTTATAGGG
* * * *
32857855 TAGAATGACTGAAACACCCTCATAGGG
1 TAAAATGACCGAAATACCCTTATAGGG
* * *
32857882 TAGAATGATCGAAATACCCTTGTAGGG
1 TAAAATGACCGAAATACCCTTATAGGG
* *
32857909 TAAAATGACTGTAATACCC
1 TAAAATGACCGAAATACCC
32857928 CGGTAAGGTA
Statistics
Matches: 131, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 131 1.00
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCTTATAGGG
Found at i:32857847 original size:81 final size:81
Alignment explanation
Indices: 32857747--32857944 Score: 272
Period size: 81 Copynumber: 2.4 Consensus size: 81
32857737 CCTTATGTGA
* *
32857747 TAAAATGATCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAGAATGACCA
1 TAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAACACCCTCATAGGGTAGAATGACCA
32857812 AAATACCCCTGTAGGG
66 AAATACCCCTGTAGGG
* * * * *
32857828 TAAAATGACCGAAATACCCTTATAGGGTAGAATGACTGAAACACCCTCATAGGGTAGAATGATCG
1 TAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAACACCCTCATAGGGTAGAATGACCA
*
32857893 AAATACCCTTGTAGGG
66 AAATACCCCTGTAGGG
* * * *
32857909 TAAAATGACTGTAATACCC-CGGTAAGGTAAAATGAC
1 TAAAATGACCGAAATACCCTC-ATAGGGTAAAATGAC
32857945 AGATTTGTTC
Statistics
Matches: 102, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
81 102 1.00
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.21
Consensus pattern (81 bp):
TAAAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAACACCCTCATAGGGTAGAATGACCA
AAATACCCCTGTAGGG
Found at i:32858305 original size:18 final size:18
Alignment explanation
Indices: 32858276--32858334 Score: 73
Period size: 18 Copynumber: 3.3 Consensus size: 18
32858266 TTTGCTTGCA
*
32858276 TACTGTACTGATTATTGT
1 TACTGCACTGATTATTGT
* * *
32858294 TACTGCATTGATCATGGT
1 TACTGCACTGATTATTGT
*
32858312 TACTGCACTGATTACTGT
1 TACTGCACTGATTATTGT
32858330 TACTG
1 TACTG
32858335 AAATGGGCTA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.42
Consensus pattern (18 bp):
TACTGCACTGATTATTGT
Found at i:32866079 original size:29 final size:29
Alignment explanation
Indices: 32866034--32866116 Score: 103
Period size: 29 Copynumber: 2.9 Consensus size: 29
32866024 TGAATGTGAC
* * *
32866034 TGGGCATAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
* *
32866063 TGTGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
* *
32866092 TGGGCCTAATGGGCCAAATACAGGT
1 TGGGCCTAATGGGCCATATAAAGGT
32866117 ATGTGAATTT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAAGGTGATT
Found at i:32884064 original size:43 final size:42
Alignment explanation
Indices: 32883979--32884092 Score: 122
Period size: 43 Copynumber: 2.7 Consensus size: 42
32883969 CATCGACTTA
* *
32883979 TGATTTACATGTAAGACCATGGCTAGGACATGGGCATCATATT
1 TGATTT-CATGTAAGACCATGTCTGGGACATGGGCATCATATT
* *
32884022 TGATTTCATGTAAGACCTTGTCTGGGATA-GTGGCATCGATATT
1 TGATTTCATGTAAGACCATGTCTGGGACATG-GGCATC-ATATT
** * *
32884065 TGGCTACATGTAAGACCACGTCTGGGAC
1 TGATTTCATGTAAGACCATGTCTGGGAC
32884093 GTTAGCATTG
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 1 0.02
42 25 0.42
43 33 0.56
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (42 bp):
TGATTTCATGTAAGACCATGTCTGGGACATGGGCATCATATT
Found at i:32899582 original size:93 final size:93
Alignment explanation
Indices: 32899423--32899873 Score: 821
Period size: 93 Copynumber: 4.8 Consensus size: 93
32899413 GGATGGTTGA
*
32899423 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
32899488 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
32899516 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
32899581 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
32899609 GCATCTGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
32899674 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
32899702 GCATCTGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
32899767 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
32899795 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
32899860 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
32899874 CTTATGGGTG
Statistics
Matches: 349, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 349 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:32906332 original size:21 final size:21
Alignment explanation
Indices: 32906294--32906333 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
32906284 GGGGGCATAG
*
32906294 AGAAGCCGATTGATCCATCTT
1 AGAAGCCGATTCATCCATCTT
32906315 AGAAGCCAGATTCA-CCATC
1 AGAAGCC-GATTCATCCATC
32906334 AAGACTGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.23
Consensus pattern (21 bp):
AGAAGCCGATTCATCCATCTT
Found at i:32917892 original size:27 final size:26
Alignment explanation
Indices: 32917848--32917899 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
32917838 CTCACTTCAA
*
32917848 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
32917875 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
32917900 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:32920817 original size:33 final size:33
Alignment explanation
Indices: 32920774--32920846 Score: 128
Period size: 33 Copynumber: 2.2 Consensus size: 33
32920764 ATCTGGACCA
* *
32920774 AAGCCCTATTCAGTCTCGACATATACTGGGCCG
1 AAGCCTTATTCAGTCTCGACAAATACTGGGCCG
32920807 AAGCCTTATTCAGTCTCGACAAATACTGGGCCG
1 AAGCCTTATTCAGTCTCGACAAATACTGGGCCG
32920840 AAGCCTT
1 AAGCCTT
32920847 TCGTTTAACG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (33 bp):
AAGCCTTATTCAGTCTCGACAAATACTGGGCCG
Found at i:32921148 original size:24 final size:25
Alignment explanation
Indices: 32921121--32921172 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
32921111 GCCTAGCCTC
32921121 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
*
32921145 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
32921170 TTT
1 TTT
32921173 CGCACTTCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:32921242 original size:32 final size:32
Alignment explanation
Indices: 32921206--32921270 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 32
32921196 ACCCAACCCA
*
32921206 TGCATATAATAAGTATATCAT-AGCATATCATG
1 TGCATATAATAA-CATATCATGAGCATATCATG
* * *
32921238 TGCATATCATTACATATCATGTGCATATCATG
1 TGCATATAATAACATATCATGAGCATATCATG
32921270 T
1 T
32921271 CCTATCATGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
31 7 0.25
32 21 0.75
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.37
Consensus pattern (32 bp):
TGCATATAATAACATATCATGAGCATATCATG
Found at i:32921276 original size:10 final size:11
Alignment explanation
Indices: 32921228--32921280 Score: 74
Period size: 11 Copynumber: 5.0 Consensus size: 11
32921218 GTATATCATA
32921228 GCATATCATGT
1 GCATATCATGT
32921239 GCATATCAT-T
1 GCATATCATGT
*
32921249 ACATATCATGT
1 GCATATCATGT
32921260 GCATATCATGT
1 GCATATCATGT
*
32921271 -CCTATCATGT
1 GCATATCATGT
32921281 ATAACAATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
10 18 0.47
11 20 0.53
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (11 bp):
GCATATCATGT
Found at i:32921280 original size:21 final size:21
Alignment explanation
Indices: 32921220--32921268 Score: 82
Period size: 21 Copynumber: 2.3 Consensus size: 21
32921210 TATAATAAGT
32921220 ATATCA-TAGCATATCATGTGC
1 ATATCATTA-CATATCATGTGC
32921241 ATATCATTACATATCATGTGC
1 ATATCATTACATATCATGTGC
32921262 ATATCAT
1 ATATCAT
32921269 GTCCTATCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 25 0.93
22 2 0.07
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (21 bp):
ATATCATTACATATCATGTGC
Found at i:32921423 original size:27 final size:27
Alignment explanation
Indices: 32921393--32921507 Score: 117
Period size: 27 Copynumber: 4.3 Consensus size: 27
32921383 AGGCAAAATG
*
32921393 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * * *
32921420 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTTTACCCCACAAGGGTATTTCA
* *
32921447 GT-ATTTCTACCCTACAAGGGTATTTCG
1 GTAATTT-TACCCCACAAGGGTATTTCA
* *
32921474 GTAATTCT-CCCCTACAGGGGTATTTCA
1 GTAATTTTACCCC-ACAAGGGTATTTCA
32921501 GTAATTT
1 GTAATTT
32921508 CACAATCGAG
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
26 6 0.08
27 64 0.88
28 3 0.04
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:32921458 original size:54 final size:55
Alignment explanation
Indices: 32921393--32921508 Score: 173
Period size: 54 Copynumber: 2.1 Consensus size: 55
32921383 AGGCAAAATG
*
32921393 GTAATTT-TACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCA
* * * *
32921447 GT-ATTTCTACCCTACAAGGGTATTTCGGTAATTCTCCCCTACAGGGGTATTTCA
1 GTAATTTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCA
32921501 GTAATTTC
1 GTAATTTC
32921509 ACAATCGAGG
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
53 4 0.07
54 46 0.84
55 5 0.09
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.34
Consensus pattern (55 bp):
GTAATTTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCA
Found at i:32921541 original size:27 final size:27
Alignment explanation
Indices: 32921511--32921632 Score: 165
Period size: 27 Copynumber: 4.5 Consensus size: 27
32921501 GTAATTTCAC
*
32921511 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
*
32921538 AATCGAGGGTAAAACAATAATTCTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
* *
32921565 AATCAAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGATAATTCTGTA
* **
32921592 AATCAAGGGTAAAACGGCAATTCTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
32921619 AATCGTA-GGTAAAA
1 AATCG-AGGGTAAAA
32921633 TAGTAATTGG
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 84 0.99
28 1 0.01
ACGTcount: A:0.43, C:0.11, G:0.20, T:0.25
Consensus pattern (27 bp):
AATCGAGGGTAAAACGATAATTCTGTA
Found at i:32925891 original size:44 final size:42
Alignment explanation
Indices: 32925840--32925937 Score: 117
Period size: 44 Copynumber: 2.3 Consensus size: 42
32925830 ATATGTGTTG
*
32925840 TCGTGTAAGACCACATCTGGGACATTGCCATCG-ACTTATGATT
1 TCGTGTAAGACCACATCTGGGACATGGCCATCGTAC-T-TGATT
** * *
32925883 TACGTGTAAGACCATGTCTGGGACATGGGCATTGTACTTGATT
1 T-CGTGTAAGACCACATCTGGGACATGGCCATCGTACTTGATT
32925926 TCGTGTAAGACC
1 TCGTGTAAGACC
32925938 TTGTCTAGGA
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
42 11 0.23
43 7 0.15
44 28 0.58
45 2 0.04
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGACCACATCTGGGACATGGCCATCGTACTTGATT
Found at i:32928795 original size:39 final size:39
Alignment explanation
Indices: 32928762--32928881 Score: 134
Period size: 39 Copynumber: 3.1 Consensus size: 39
32928752 TATATCCTAT
*
32928762 TACACATATAATCACCTAACATTCAAGCATATATCACAA
1 TACACATATAATCACATAACATTCAAGCATATATCACAA
* * ** * *
32928801 TACTCATATAGTCACATAACATTCTTGGATATTTCACAA
1 TACACATATAATCACATAACATTCAAGCATATATCACAA
* * *
32928840 TATACATTTAATCTCATAACATTTC-AGCATATATCACAA
1 TACACATATAATCACATAACA-TTCAAGCATATATCACAA
32928879 TAC
1 TAC
32928882 TCAAAAACAT
Statistics
Matches: 64, Mismatches: 16, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
39 61 0.95
40 3 0.05
ACGTcount: A:0.41, C:0.23, G:0.04, T:0.33
Consensus pattern (39 bp):
TACACATATAATCACATAACATTCAAGCATATATCACAA
Found at i:32930145 original size:21 final size:22
Alignment explanation
Indices: 32930102--32930152 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
32930092 ATTTTTATTT
* *
32930102 AAAACATGCAATTTAATGGCTA
1 AAAACATGCAATTTAAAGACTA
*
32930124 AAAACTTGC-ATTTAAAGACTA
1 AAAACATGCAATTTAAAGACTA
32930145 AATAACAT
1 AA-AACAT
32930153 TTAAAACTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.49, C:0.14, G:0.10, T:0.27
Consensus pattern (22 bp):
AAAACATGCAATTTAAAGACTA
Found at i:32930834 original size:26 final size:26
Alignment explanation
Indices: 32930805--32930948 Score: 182
Period size: 26 Copynumber: 5.5 Consensus size: 26
32930795 AATTTTCCTG
*
32930805 AAAAGCATTCTTTCATATTACACCAC
1 AAAAGCTTTCTTTCATATTACACCAC
*
32930831 AAAAGTTTTCTTTCATATTACACCAC
1 AAAAGCTTTCTTTCATATTACACCAC
**
32930857 AAAAGCTTTCTTTCATATTATGCCAC
1 AAAAGCTTTCTTTCATATTACACCAC
*
32930883 -AAAGACTTTCTTTCATATTACTCCAC
1 AAAAG-CTTTCTTTCATATTACACCAC
* * **
32930909 AAAGGCTTTGTTTCATATTATGCCAC
1 AAAAGCTTTCTTTCATATTACACCAC
*
32930935 AAAGGCTTTCTTTC
1 AAAAGCTTTCTTTC
32930949 TAGACGTGTT
Statistics
Matches: 104, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
25 4 0.04
26 97 0.93
27 3 0.03
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.38
Consensus pattern (26 bp):
AAAAGCTTTCTTTCATATTACACCAC
Found at i:32936347 original size:81 final size:81
Alignment explanation
Indices: 32936261--32936541 Score: 368
Period size: 81 Copynumber: 3.5 Consensus size: 81
32936251 TATGTCGATC
* * * *
32936261 ATTTTACAAATCGGGGGTGTTTTGGTAATTTTACAAATCGAAGGTATTTCGATAATTTTACAAAT
1 ATTTCACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAAT
*
32936326 CGAGGGTATTTAAGTA
66 CGAGGGTATTTCAGTA
* * * * * *
32936342 ATTTTACAAATTGAGGGTGTTTCGGTAATTTCACAAATC-AGGGGTATTTTGATAATGTTAAAAA
1 ATTTCACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGA-GGGTATTTCGATAATTTTACAAA
*
32936406 TCGAAGGTATTTCAGTA
65 TCGAGGGTATTTCAGTA
* *
32936423 ATTTCAC-AATCGAGGGTATTTCGGTAATTTTACAAATCGGGGGTATTTCGATAATTTTACAAAT
1 ATTTCACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAAT
* * *
32936487 CAAGGGTGTTTCGGTA
66 CGAGGGTATTTCAGTA
* *
32936503 ATTTCACAAATCGGGGGTTTTTCGGTAATTTTACAAATC
1 ATTTCACAAATCGAGGGTGTTTCGGTAATTTTACAAATC
32936542 AGAATATTTT
Statistics
Matches: 173, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
80 69 0.40
81 104 0.60
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.37
Consensus pattern (81 bp):
ATTTCACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAAT
CGAGGGTATTTCAGTA
Found at i:32936551 original size:27 final size:27
Alignment explanation
Indices: 32936247--32936541 Score: 324
Period size: 27 Copynumber: 11.0 Consensus size: 27
32936237 TTTATCTTAT
* * *
32936247 AGGGTATGTCGATCATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
32936274 GGGGTGTTTTGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
32936301 AAGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
** *
32936328 AGGGTATTTAAGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
32936355 AGGGTGTTTCGGTAATTTCACAAATC-
1 AGGGTATTTCGGTAATTTTACAAATCG
* * * *
32936381 AGGGGTATTTTGATAATGTTAAAAATCG
1 A-GGGTATTTCGGTAATTTTACAAATCG
* * *
32936409 AAGGTATTTCAGTAATTTCAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
32936435 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
32936462 GGGGTATTTCGATAATTTTACAAATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
32936489 AGGGTGTTTCGGTAATTTCACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
32936516 GGGGTTTTTCGGTAATTTTACAAATC
1 AGGGTATTTCGGTAATTTTACAAATC
32936542 AGAATATTTT
Statistics
Matches: 217, Mismatches: 48, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
26 24 0.11
27 192 0.88
28 1 0.00
ACGTcount: A:0.31, C:0.11, G:0.22, T:0.37
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:32938841 original size:30 final size:30
Alignment explanation
Indices: 32938807--32938867 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
32938797 TTCCCGAGCC
*
32938807 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTATAAATATGCAAAAGTT
* *
32938837 TAGGGGCAAAATTATAAATTTGCAAAAGTT
1 TAGGGGCAAAAGTATAAATATGCAAAAGTT
32938867 T
1 T
32938868 GAGTTAAGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.43, C:0.07, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAGTATAAATATGCAAAAGTT
Found at i:32939740 original size:51 final size:51
Alignment explanation
Indices: 32939680--32939919 Score: 315
Period size: 51 Copynumber: 4.8 Consensus size: 51
32939670 CTAGGTCGCA
**
32939680 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCTATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACG
**
32939731 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCTATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACG
* * * * * *
32939782 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-AGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACG
* * * * *
32939832 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACG
*
32939881 TGTGTAGTACTAAGTACAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
32939920 GTTTGGCTAC
Statistics
Matches: 174, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
49 41 0.24
50 48 0.28
51 85 0.49
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACG
Found at i:32939856 original size:101 final size:99
Alignment explanation
Indices: 32939678--32939922 Score: 319
Period size: 101 Copynumber: 2.4 Consensus size: 99
32939668 AGCTAGGTCG
** * *
32939678 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCTATAACTTCGATCACGTGTGTAGTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT-AGTTAGATCACGTGTGTAGTACTA
* **
32939743 AGTGCAGGCTACTATGCGTACCCTATAACTTCGATCA
65 AGTGCAGGCTACTACGCGTACCAGATAA-TT-GATCA
* * * * *
32939780 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACGTGTGTAGTACTAA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGTTAGATCACGTGTGTAGTACTAA
* * *
32939845 GTGCAGGCTACTACGTGTACCAGATAATTGGTCG
66 GTGCAGGCTACTACGCGTACCAGATAATTGATCA
*
32939879 CATGTGTAGTACTAAGTACAGGCTACTATGCGTACCAGATAGTT
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGTT
32939923 TGGCTACATA
Statistics
Matches: 123, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
99 42 0.34
100 2 0.02
101 45 0.37
102 34 0.28
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (99 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGTTAGATCACGTGTGTAGTACTAA
GTGCAGGCTACTACGCGTACCAGATAATTGATCA
Found at i:32943741 original size:27 final size:27
Alignment explanation
Indices: 32943451--32943800 Score: 397
Period size: 27 Copynumber: 13.0 Consensus size: 27
32943441 TACCCTACAG
* * * *
32943451 GGGTATGTCGATCATTTTAC-ACTACAA
1 GGGTATTTCGATAATTTTACAAAT-CGA
* *
32943478 GGGTATTTCGATAATTTTAC-ACTACAA
1 GGGTATTTCGATAATTTTACAAAT-CGA
*
32943505 GGGTATTTTGATAATTTTACAAATCGA
1 GGGTATTTCGATAATTTTACAAATCGA
* *
32943532 GGGTGTTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGATAATTTTACAAATCGA
32943559 GGGTATTTCGATAATTTTACAAATCGA
1 GGGTATTTCGATAATTTTACAAATCGA
* * *
32943586 GGGTATTTCAATAATTTTTCAAATCAA
1 GGGTATTTCGATAATTTTACAAATCGA
* * * *
32943613 GGGTGTTTTGATAATTTCACAAATCGG
1 GGGTATTTCGATAATTTTACAAATCGA
32943640 GGGTATTTCAGA-AATTTTACAAATCGA
1 GGGTATTTC-GATAATTTTACAAATCGA
* * *
32943667 GGGTATTTTAGA-AATTTCAC-AATCAA
1 GGGTA-TTTCGATAATTTTACAAATCGA
* *
32943693 GGGTATTTCAATAATTTTACAAATTGA
1 GGGTATTTCGATAATTTTACAAATCGA
32943720 GGGTATTTCGATAATTTTACAAATCGA
1 GGGTATTTCGATAATTTTACAAATCGA
* *
32943747 GGGTGTTTC-AGTAATTTCACAAATCGA
1 GGGTATTTCGA-TAATTTTACAAATCGA
*
32943774 GGGTATCTCGATAATTTTACAAATCGA
1 GGGTATTTCGATAATTTTACAAATCGA
32943801 CAGTTTTTTA
Statistics
Matches: 277, Mismatches: 39, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
25 4 0.01
26 18 0.06
27 247 0.89
28 8 0.03
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.37
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACAAATCGA
Found at i:32943743 original size:134 final size:135
Alignment explanation
Indices: 32943504--32943818 Score: 420
Period size: 134 Copynumber: 2.3 Consensus size: 135
32943494 TTACACTACA
* * * ** * * *
32943504 AGGGTATTTTGATAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTCG
1 AGGGTATCTCGATAATTTTACAAATCGAGGGTATTTTAGTAATTTCACAAATCAAGGGTATTTCA
* *
32943569 ATAATTTTACAAATCGAGGGTATTTCAATAATTTTTCAAATCAAGGGTGTTT-TGATAATTTCAC
66 ATAATTTTACAAATCGAGGGTATTTCAATAATTTTACAAATCAAGGGTGTTTCAG-TAATTTCAC
32943633 AAATCG
130 AAATCG
* * *
32943639 GGGGTATTTCAGA-AATTTTACAAATCGAGGGTATTTTAGAAATTTCAC-AATCAAGGGTATTTC
1 AGGGTATCTC-GATAATTTTACAAATCGAGGGTATTTTAGTAATTTCACAAATCAAGGGTATTTC
* * *
32943702 AATAATTTTACAAATTGAGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTCAGTAATTTCAC
65 AATAATTTTACAAATCGAGGGTATTTCAATAATTTTACAAATCAAGGGTGTTTCAGTAATTTCAC
32943767 AAATCG
130 AAATCG
** *
32943773 AGGGTATCTCGATAATTTTACAAATCGACAGTTTTTTAGTAATTTC
1 AGGGTATCTCGATAATTTTACAAATCGAGGGTATTTTAGTAATTTC
32943819 TCTTTATTAT
Statistics
Matches: 157, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
133 2 0.01
134 114 0.73
135 39 0.25
136 2 0.01
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (135 bp):
AGGGTATCTCGATAATTTTACAAATCGAGGGTATTTTAGTAATTTCACAAATCAAGGGTATTTCA
ATAATTTTACAAATCGAGGGTATTTCAATAATTTTACAAATCAAGGGTGTTTCAGTAATTTCACA
AATCG
Found at i:32948132 original size:27 final size:27
Alignment explanation
Indices: 32948093--32948186 Score: 116
Period size: 27 Copynumber: 3.5 Consensus size: 27
32948083 TGATTGACTG
*
32948093 AAATGACTATTTTGCCCTTATAAGGTA
1 AAATGACTATTTTGCCCTTATATGGTA
* * *
32948120 AAATGAATGTTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATATGGTA
* *
32948147 AAATGACTATTTTGACCTTTTATGGTA
1 AAATGACTATTTTGCCCTTATATGGTA
* *
32948174 AGATGACTGTTTT
1 AAATGACTATTTT
32948187 ACCCCTATGT
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.41
Consensus pattern (27 bp):
AAATGACTATTTTGCCCTTATATGGTA
Found at i:32948185 original size:54 final size:54
Alignment explanation
Indices: 32948093--32948197 Score: 147
Period size: 54 Copynumber: 1.9 Consensus size: 54
32948083 TGATTGACTG
* * *
32948093 AAATGACTATTTTGCCCTTATAAGGTAAAATGAATGTTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGACCTTATAAGGTAAAATGAATGTTTTACCCCTATGTGGTA
* * * *
32948147 AAATGACTATTTTGACCTTTTATGGTAAGATGACTGTTTTACCCCTATGTG
1 AAATGACTATTTTGACCTTATAAGGTAAAATGAATGTTTTACCCCTATGTG
32948198 ATGTATGTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (54 bp):
AAATGACTATTTTGACCTTATAAGGTAAAATGAATGTTTTACCCCTATGTGGTA
Found at i:32948517 original size:6 final size:6
Alignment explanation
Indices: 32948506--32948557 Score: 63
Period size: 6 Copynumber: 8.8 Consensus size: 6
32948496 TGCATATTGT
* *
32948506 TTACTG TTACTG -TACTG TTACTG TTACTA TTACTG -CACTG TTTACTG
1 TTACTG TTACTG TTACTG TTACTG TTACTG TTACTG TTACTG -TTACTG
32948553 TTACT
1 TTACT
32948558 ACAATGGGCC
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 9 0.23
6 26 0.67
7 4 0.10
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.48
Consensus pattern (6 bp):
TTACTG
Done.