Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 106 of 333
Found at i:33988677 original size:22 final size:23
Alignment explanation
Indices: 33988652--33988707 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 23
33988642 AAATTATTGT
33988652 TTATAAAATA-TAAAA-TTACTTA
1 TTATAAAATATTAAAATTTAC-TA
33988674 TTATATAAATAATTAAAATTTACTA
1 TTATA-AAAT-ATTAAAATTTACTA
33988699 TT-TAAAATA
1 TTATAAAATA
33988708 AAAGTAATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
22 6 0.20
23 8 0.27
24 3 0.10
25 9 0.30
26 4 0.13
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.43
Consensus pattern (23 bp):
TTATAAAATATTAAAATTTACTA
Found at i:33988692 original size:25 final size:23
Alignment explanation
Indices: 33988655--33988708 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 23
33988645 TTATTGTTTA
33988655 TAAAAT-A-TAAAA-TTACTTATT
1 TAAAATAATTAAAATTTAC-TATT
33988676 ATATAAATAATTAAAATTTACTATT
1 -TA-AAATAATTAAAATTTACTATT
33988701 TAAAATAA
1 TAAAATAA
33988709 AAGTAATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
22 2 0.07
23 10 0.36
24 3 0.11
25 9 0.32
26 4 0.14
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.41
Consensus pattern (23 bp):
TAAAATAATTAAAATTTACTATT
Found at i:34025796 original size:19 final size:18
Alignment explanation
Indices: 34025767--34025807 Score: 57
Period size: 17 Copynumber: 2.2 Consensus size: 18
34025757 TTGTAAAAGT
34025767 TGTGAAAATGAGTAGAAAAA
1 TGTGAAAATGAG-AG-AAAA
34025787 TGTG-AAATGAGAGAAAA
1 TGTGAAAATGAGAGAAAA
34025804 TGTG
1 TGTG
34025808 TAACACCCCG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.38
18 2 0.10
19 7 0.33
20 4 0.19
ACGTcount: A:0.49, C:0.00, G:0.29, T:0.22
Consensus pattern (18 bp):
TGTGAAAATGAGAGAAAA
Found at i:34027249 original size:40 final size:40
Alignment explanation
Indices: 34027195--34027408 Score: 272
Period size: 40 Copynumber: 5.3 Consensus size: 40
34027185 CTCGCACAAG
* * * *
34027195 GCCTTCGGGTCTTAGTCCGG-ATATGGTCACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTAGCACAAAT
34027235 GCCTTCGGGACTTAGCCCGG-ATATAGTAACTCA-CACAAAT
1 GCCTTCGGGACTTAGCCCGGAAT-TAGTAACT-AGCACAAAT
* *
34027275 GCCTTCGGGGCTTAGCCCGGAATTAGTAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAAT
* * *
34027315 GCCTTCGGGGCTTAGCCCGGAATTAGTAACTCGTACAAAT
1 GCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAAT
* *
34027355 GCCTTCGGGACTTAGCCCGGAATTAATCACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAAT
*
34027395 GTCTTCGGGACTTA
1 GCCTTCGGGACTTA
34027409 ACCCCGTTAG
Statistics
Matches: 158, Mismatches: 13, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
40 155 0.98
41 3 0.02
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAAT
Found at i:34027295 original size:80 final size:80
Alignment explanation
Indices: 34027159--34027408 Score: 310
Period size: 80 Copynumber: 3.1 Consensus size: 80
34027149 ACCCAATTAT
* *** * * * *
34027159 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGTCCGG-ATATGG
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAG
34027221 TCACTAGCACAAATGC
65 TCACTAGCACAAATGC
* *
34027237 CTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGGCTTAGCCCGGAATTAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* *
34027302 AACTCGCACAAATGC
66 CACTAGCACAAATGC
* * *
34027317 CTTCGGGGCTTAGCCCGGA-ATTAGTAACTCGTACAAATGCCTTCGGGACTTAGCCCGGAATTAA
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
*
34027381 TCACTAGCACAAATGT
65 TCACTAGCACAAATGC
34027397 CTTCGGGACTTA
1 CTTCGGGACTTA
34027409 ACCCCGTTAG
Statistics
Matches: 148, Mismatches: 20, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 12 0.08
79 17 0.11
80 117 0.79
81 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
CACTAGCACAAATGC
Found at i:34032500 original size:40 final size:40
Alignment explanation
Indices: 34032435--34032659 Score: 285
Period size: 40 Copynumber: 5.7 Consensus size: 40
34032425 GGATATAACC
* * * * *
34032435 ACTCGCAC-AAGGCCTTCGGGTCTTAGTCCGG-ATATGGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
*
34032474 ACTAGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
* *
34032514 ACTCGCCCAAATGCCTTCGGGGCTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
34032554 ACTCGCACAAATGCCTTCGGGGCTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* * *
34032594 ACTCGCACAAATGCCTTCGAGACTTAGCCCGGAATTAATC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
34032634 ACTAGCACAAATGTCTTCGGGACTTA
1 ACTCGCACAAATGCCTTCGGGACTTA
34032660 ACCCCGTTAG
Statistics
Matches: 167, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 7 0.04
40 158 0.95
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:34041395 original size:77 final size:77
Alignment explanation
Indices: 34041305--34041472 Score: 255
Period size: 77 Copynumber: 2.2 Consensus size: 77
34041295 ATGGCCTGAC
*
34041305 ACACAGTCGTGTGGGACACACGGGCGTATCCCAAGCTGTATTGATACATGGGATAAAAGCATATA
1 ACACAGTCGTGTGGGACACACGAGCGTATCCCAAGCTGTATTGATACATGGGATAAAAGCATATA
*
34041370 CATGGTTAATAG
66 CACGGTTAATAG
* * ** * *
34041382 ACACAGTCGTGTGGGATACACGAGCGTCTCTGAAGCTGTGTTGATACATGGGCTAAAAGCATATA
1 ACACAGTCGTGTGGGACACACGAGCGTATCCCAAGCTGTATTGATACATGGGATAAAAGCATATA
34041447 CACGGTTAATAG
66 CACGGTTAATAG
*
34041459 ACACGGTCGTGTGG
1 ACACAGTCGTGTGG
34041473 CCCAACACGG
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
77 82 1.00
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (77 bp):
ACACAGTCGTGTGGGACACACGAGCGTATCCCAAGCTGTATTGATACATGGGATAAAAGCATATA
CACGGTTAATAG
Found at i:34043558 original size:24 final size:25
Alignment explanation
Indices: 34043526--34043585 Score: 79
Period size: 24 Copynumber: 2.4 Consensus size: 25
34043516 TTTCATTTGT
34043526 TTTTATTTTTATT-TTCAATTG-TAA
1 TTTTATTTTTATTGTT-AATTGTTAA
*
34043550 TTTTATTTTTATTGTTAATTGTTTTA
1 TTTTATTTTTATTGTTAATTG-TTAA
34043576 TTTTATTTTT
1 TTTTATTTTT
34043586 TAGACTTATA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 18 0.56
25 2 0.06
26 12 0.38
ACGTcount: A:0.20, C:0.02, G:0.05, T:0.73
Consensus pattern (25 bp):
TTTTATTTTTATTGTTAATTGTTAA
Found at i:34056088 original size:40 final size:40
Alignment explanation
Indices: 34056033--34056157 Score: 173
Period size: 40 Copynumber: 3.1 Consensus size: 40
34056023 GCTTGCAATG
* * *
34056033 CATTGACTTGGTTATGTTACCGTAAGCATGTTAAGCATGC
1 CATTGAATTGATTATGTTACCATAAGCATGTTAAGCATGC
34056073 CATTGAATTGATTATGTTACCATAAGCATGTTAA-CTATGC
1 CATTGAATTGATTATGTTACCATAAGCATGTTAAGC-ATGC
* *
34056113 CATTGAATTGATTATGTTTCCATAAGCAT-ATAAGACATGC
1 CATTGAATTGATTATGTTACCATAAGCATGTTAAG-CATGC
34056153 CATTG
1 CATTG
34056158 TACTTAAATC
Statistics
Matches: 77, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.94
41 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (40 bp):
CATTGAATTGATTATGTTACCATAAGCATGTTAAGCATGC
Found at i:34056852 original size:50 final size:50
Alignment explanation
Indices: 34056797--34056904 Score: 189
Period size: 50 Copynumber: 2.2 Consensus size: 50
34056787 GGACTGTAAA
*
34056797 GCTTTATTTTGGACTATGGTTTATGGTTTTTGGATATGGTTTTTACGCAT
1 GCTTTATTTTGGACTATGGTTTATGGTTTTTAGATATGGTTTTTACGCAT
* *
34056847 GCTTTATTTTGGGCTATGGTTTATGGTTTTTAGATATGGTTTTTATGCAT
1 GCTTTATTTTGGACTATGGTTTATGGTTTTTAGATATGGTTTTTACGCAT
34056897 GCTTTATT
1 GCTTTATT
34056905 CAACACATTG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.16, C:0.07, G:0.23, T:0.54
Consensus pattern (50 bp):
GCTTTATTTTGGACTATGGTTTATGGTTTTTAGATATGGTTTTTACGCAT
Found at i:34062506 original size:25 final size:25
Alignment explanation
Indices: 34062474--34062560 Score: 75
Period size: 25 Copynumber: 3.5 Consensus size: 25
34062464 AGCTATAAAC
* * *
34062474 GGGAAGCTCCTCCAAGCTGAATAAT
1 GGGAAGCTCATACAAGCTAAATAAT
*
34062499 GGGAAGCTCATACGAGCTAAATAAT
1 GGGAAGCTCATACAAGCTAAATAAT
* * * ** * *
34062524 GGAAAGCTTATACGAGCTGTAGAAC
1 GGGAAGCTCATACAAGCTAAATAAT
34062549 GGGAAGCTCATA
1 GGGAAGCTCATA
34062561 AGAGATGAAA
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 50 1.00
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.20
Consensus pattern (25 bp):
GGGAAGCTCATACAAGCTAAATAAT
Found at i:34074901 original size:30 final size:30
Alignment explanation
Indices: 34074844--34074901 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
34074834 TTTTCGGGCT
* * * **
34074844 TAGGGGTAAAATGGTTATTTTGTCAAAGTC
1 TAGGGGCAAAATGGTCATTGTACCAAAGTC
34074874 TAGGGGCAAAATGGTCATTGTACCAAAG
1 TAGGGGCAAAATGGTCATTGTACCAAAG
34074902 ATAGAATTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTGTACCAAAGTC
Found at i:34075285 original size:46 final size:46
Alignment explanation
Indices: 34075232--34075496 Score: 162
Period size: 46 Copynumber: 5.6 Consensus size: 46
34075222 TGTGAGCTAG
* ** *
34075232 TGTAAGACATGTATGGGACATGCATCGGCCACGTTATGGGAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGAGAGCCAA
* * * * * *
34075278 TGTAAGACCATGTCTGGGACATGGCAT-TGACATTGAGATGAGTGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CGAGATGAGAGCCAA
* * *
34075326 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA-AGTCAA
1 TGTAAGACATGTCTGGGACATGCATCGGCCACGAGATG-AGAGCCAA
* * * * * * *
34075372 TGTAAGACATGTTTGGGACATGCATTGGCTACGAAAT-A-TGTCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGAGAGCCAA
* * **
34075416 TGTAAGACCATGTCTGGGAGATGGCATCGG-CACAGATATGCTAGAGCCTG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC-GAGATG--AGAGCCAA
* *
34075466 CGTAAGACCAAGTCTGGGACATGGCATCGGC
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGC
34075497 ACCTTACTCC
Statistics
Matches: 168, Mismatches: 38, Indels: 21
0.74 0.17 0.09
Matches are distributed among these distances:
44 12 0.07
45 14 0.08
46 59 0.35
47 33 0.20
48 19 0.11
49 1 0.01
50 30 0.18
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGAGAGCCAA
Found at i:34082904 original size:43 final size:42
Alignment explanation
Indices: 34082783--34082939 Score: 203
Period size: 43 Copynumber: 3.7 Consensus size: 42
34082773 TGTGTGTTCG
* *
34082783 TGTAAGAGCACGTCTGGGACGTTGGCATTG-ACTTATGATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTA-TT-TGATTT-CA
*
34082827 TGTAAGACCACATCTGGGACGTTGGCATCGTATTTGATTTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTTCA
*
34082869 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCG-TATTTGATTTCA
34082912 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
34082940 TGTACGAGCT
Statistics
Matches: 102, Mismatches: 5, Indels: 13
0.85 0.04 0.11
Matches are distributed among these distances:
41 1 0.01
42 28 0.27
43 42 0.41
44 30 0.29
45 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTTCA
Found at i:34087513 original size:67 final size:67
Alignment explanation
Indices: 34087435--34087569 Score: 270
Period size: 67 Copynumber: 2.0 Consensus size: 67
34087425 ACAATTTATT
34087435 CACTTGACTTGATCCGTAGAAATGCCTAAGTTATATTATTATCTCTCTCGAGACTAACAACATCT
1 CACTTGACTTGATCCGTAGAAATGCCTAAGTTATATTATTATCTCTCTCGAGACTAACAACATCT
34087500 AA
66 AA
34087502 CACTTGACTTGATCCGTAGAAATGCCTAAGTTATATTATTATCTCTCTCGAGACTAACAACATCT
1 CACTTGACTTGATCCGTAGAAATGCCTAAGTTATATTATTATCTCTCTCGAGACTAACAACATCT
34087567 AA
66 AA
34087569 C
1 C
34087570 CCTAGGTTGA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 68 1.00
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.33
Consensus pattern (67 bp):
CACTTGACTTGATCCGTAGAAATGCCTAAGTTATATTATTATCTCTCTCGAGACTAACAACATCT
AA
Found at i:34094326 original size:12 final size:13
Alignment explanation
Indices: 34094309--34094337 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
34094299 TTCTTTCATT
34094309 ATTTAAAA-TATA
1 ATTTAAAACTATA
34094321 ATTTAAAACTATA
1 ATTTAAAACTATA
34094334 ATTT
1 ATTT
34094338 TACAAGGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (13 bp):
ATTTAAAACTATA
Found at i:34098562 original size:44 final size:46
Alignment explanation
Indices: 34098477--34098566 Score: 130
Period size: 44 Copynumber: 2.0 Consensus size: 46
34098467 GACTATAAAT
*
34098477 GAATAGAGCTGTAATAAGTAATTCAACTGTTTGGTTGAATGGAATG
1 GAATAGAGCTATAATAAGTAATTCAACTGTTTGGTTGAATGGAATG
***
34098523 GAATAGAGCTATAAT-AGT-ATTCTTGTGTTTGGTTGAATGGAATG
1 GAATAGAGCTATAATAAGTAATTCAACTGTTTGGTTGAATGGAATG
34098567 ATGTTGTAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 23 0.57
45 3 0.08
46 14 0.35
ACGTcount: A:0.32, C:0.06, G:0.27, T:0.36
Consensus pattern (46 bp):
GAATAGAGCTATAATAAGTAATTCAACTGTTTGGTTGAATGGAATG
Found at i:34098760 original size:17 final size:17
Alignment explanation
Indices: 34098738--34098771 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
34098728 TAATTATTAT
34098738 TAAATATAATTTAATAA
1 TAAATATAATTTAATAA
34098755 TAAATATAATTTAATAA
1 TAAATATAATTTAATAA
34098772 CATTCTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TAAATATAATTTAATAA
Found at i:34098786 original size:55 final size:57
Alignment explanation
Indices: 34098664--34098794 Score: 148
Period size: 58 Copynumber: 2.3 Consensus size: 57
34098654 TTATTAAATT
*
34098664 TTAATA-AGATTATTATTAAAAATAATTTAATAAAAATAATAAATAGTTTAACTATATT
1 TTAATATA-ATTATTATTAAAAATAATTTAATAAAAATAATAAATA-TTTAACTATATC
* *
34098722 TTAACATAATTATTATTAAATATAATTTAATAATAAAT-AT-AAT-TTAATAAC-AT-TC
1 TTAATATAATTATTATTAAAAATAATTTAATAA-AAATAATAAATATT--TAACTATATC
34098777 TTAATATAATTATTATTA
1 TTAATATAATTATTATTA
34098795 TATGAATTAA
Statistics
Matches: 65, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
55 20 0.31
56 2 0.03
57 7 0.11
58 31 0.48
59 5 0.08
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (57 bp):
TTAATATAATTATTATTAAAAATAATTTAATAAAAATAATAAATATTTAACTATATC
Found at i:34101693 original size:44 final size:44
Alignment explanation
Indices: 34101645--34101733 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
34101635 TCCTCTCTTC
34101645 TTCTATTTTCTTTTTCTCCTTCTTTTCTTCTCTAGCCGAAACAT
1 TTCTATTTTCTTTTTCTCCTTCTTTTCTTCTCTAGCCGAAACAT
*
34101689 TTCTATTTTCTTTTTCTCCTTCTTTTCTTCTCTAGCTGAAACAT
1 TTCTATTTTCTTTTTCTCCTTCTTTTCTTCTCTAGCCGAAACAT
34101733 T
1 T
34101734 CCTACCATTC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.13, C:0.26, G:0.04, T:0.56
Consensus pattern (44 bp):
TTCTATTTTCTTTTTCTCCTTCTTTTCTTCTCTAGCCGAAACAT
Found at i:34113200 original size:44 final size:41
Alignment explanation
Indices: 34113164--34113242 Score: 117
Period size: 39 Copynumber: 2.0 Consensus size: 41
34113154 TAAATGCAGA
34113164 ACACATATTAATGATGTTCAAACCATGACATAATT-AA-AG
1 ACACATATTAATGATGTTCAAACCATGACATAATTAAATAG
* **
34113203 ACTCATATTAATGATGTTCAAATTATGACATAATTAAATA
1 ACACATATTAATGATGTTCAAACCATGACATAATTAAATA
34113243 TACAAACTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
39 32 0.91
40 2 0.06
41 1 0.03
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.33
Consensus pattern (41 bp):
ACACATATTAATGATGTTCAAACCATGACATAATTAAATAG
Found at i:34116727 original size:5 final size:5
Alignment explanation
Indices: 34116713--34116751 Score: 60
Period size: 5 Copynumber: 7.6 Consensus size: 5
34116703 TGAGGTGAGT
*
34116713 ATTGA TATTGA ATTGA ATGGA ATTGA ATTGA ATTGA ATT
1 ATTGA -ATTGA ATTGA ATTGA ATTGA ATTGA ATTGA ATT
34116752 ATGAATTATG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
5 26 0.84
6 5 0.16
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.41
Consensus pattern (5 bp):
ATTGA
Found at i:34119073 original size:40 final size:40
Alignment explanation
Indices: 34119029--34119256 Score: 343
Period size: 40 Copynumber: 5.7 Consensus size: 40
34119019 GCTACTAGCT
34119029 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
34119069 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
34119109 CAAATGCCTTCGGGACTTAGCCTGGTTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
34119149 CAACTGCCTTCAGGACTTAGCCCGGATATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
34119189 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
34119228 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
34119257 CAATCCGAAT
Statistics
Matches: 168, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
38 1 0.01
39 33 0.20
40 133 0.79
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:34125850 original size:8 final size:9
Alignment explanation
Indices: 34125827--34125861 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
34125817 TTTTTCTATC
*
34125827 TCTTTTTCT
1 TCTTTTTCA
34125836 TCTTTTTCA
1 TCTTTTTCA
34125845 TCTTTTTCA
1 TCTTTTTCA
34125854 TCTTTTTC
1 TCTTTTTC
34125862 TTCTCTCACT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.06, C:0.23, G:0.00, T:0.71
Consensus pattern (9 bp):
TCTTTTTCA
Found at i:34134185 original size:39 final size:39
Alignment explanation
Indices: 34134131--34134207 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
34134121 ATGTAAAACA
34134131 CATATTAATGATGTTCAAACCATGACATAATTAAAGACT
1 CATATTAATGATGTTCAAACCATGACATAATTAAAGACT
*
34134170 CATATTAATGATGTTCAAACTATGACATAATTAAAGAC
1 CATATTAATGATGTTCAAACCATGACATAATTAAAGAC
34134208 ACAAACTAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.44, C:0.14, G:0.10, T:0.31
Consensus pattern (39 bp):
CATATTAATGATGTTCAAACCATGACATAATTAAAGACT
Found at i:34137694 original size:56 final size:56
Alignment explanation
Indices: 34137608--34137724 Score: 234
Period size: 56 Copynumber: 2.1 Consensus size: 56
34137598 ATATGGATGT
34137608 ATGCTAATTACTCGGTAAGTTTACTTTCCAGTTATTTGAGCTTACTAAGCATGAAA
1 ATGCTAATTACTCGGTAAGTTTACTTTCCAGTTATTTGAGCTTACTAAGCATGAAA
34137664 ATGCTAATTACTCGGTAAGTTTACTTTCCAGTTATTTGAGCTTACTAAGCATGAAA
1 ATGCTAATTACTCGGTAAGTTTACTTTCCAGTTATTTGAGCTTACTAAGCATGAAA
34137720 ATGCT
1 ATGCT
34137725 TACCCCCTCT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 61 1.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (56 bp):
ATGCTAATTACTCGGTAAGTTTACTTTCCAGTTATTTGAGCTTACTAAGCATGAAA
Found at i:34145719 original size:20 final size:20
Alignment explanation
Indices: 34145694--34145739 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
34145684 GTATAGTACG
34145694 ACAAACCATAAATTTGTAGA
1 ACAAACCATAAATTTGTAGA
34145714 ACAAACCATAAATTTGTAGA
1 ACAAACCATAAATTTGTAGA
34145734 ACAAAC
1 ACAAAC
34145740 TAAAGTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.52, C:0.17, G:0.09, T:0.22
Consensus pattern (20 bp):
ACAAACCATAAATTTGTAGA
Found at i:34151388 original size:3 final size:3
Alignment explanation
Indices: 34151370--34151411 Score: 66
Period size: 3 Copynumber: 14.0 Consensus size: 3
34151360 GTATATACAT
* *
34151370 ATA ATA ATG ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
34151412 TGAAAATACA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:34152630 original size:17 final size:17
Alignment explanation
Indices: 34152608--34152641 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
34152598 GACGGGTTAT
34152608 TGGGTTGTTTGGTTTAG
1 TGGGTTGTTTGGTTTAG
34152625 TGGGTTGTTTGGTTTAG
1 TGGGTTGTTTGGTTTAG
34152642 GGCCCAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.06, C:0.00, G:0.41, T:0.53
Consensus pattern (17 bp):
TGGGTTGTTTGGTTTAG
Found at i:34153404 original size:72 final size:72
Alignment explanation
Indices: 34153306--34153457 Score: 193
Period size: 72 Copynumber: 2.1 Consensus size: 72
34153296 TGAAACTTAA
** * ** *
34153306 TTTGAAAAGCAGATTTTGAAAATACCTCAAT-G-AGTCTTGAGGCTCAACTCATTTCTCGCAATA
1 TTTGAAAAGCAGAAATTGAAAATACCTC-ATCGTA-TCCTGAGGCTCAACTCACCTCTAGCAATA
34153369 TGAGTTGAAT
64 TGAGTTG-AT
*
34153379 TTTGAAAA-CAGAAATTGAAATTACCTCATCGTATCCTGAGGCTCAACTCACCTCTAGCAATATG
1 TTTGAAAAGCAGAAATTGAAAATACCTCATCGTATCCTGAGGCTCAACTCACCTCTAGCAATATG
34153443 AGTTGAT
66 AGTTGAT
34153450 TTTGAAAA
1 TTTGAAAA
34153458 AGTAGGAATT
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
71 12 0.17
72 49 0.70
73 9 0.13
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (72 bp):
TTTGAAAAGCAGAAATTGAAAATACCTCATCGTATCCTGAGGCTCAACTCACCTCTAGCAATATG
AGTTGAT
Found at i:34153765 original size:126 final size:127
Alignment explanation
Indices: 34153359--34153877 Score: 915
Period size: 127 Copynumber: 4.1 Consensus size: 127
34153349 TCAACTCATT
34153359 TCTCGCAATATGAGTTGAATT-TTGA-AAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCT
1 TCTCGCAATATGAGTTG-ATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCT
34153422 CAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
65 CAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
*
34153485 TCTCGCAATATGAGTTGATTCTTGACAGACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
1 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
34153550 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
66 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
34153612 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTAT-CTGAGGCTC
1 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
*
34153676 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAGAAGGTTCAACCCACC
66 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
34153738 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
1 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
* ** * *
34153803 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAA-CAAAAATGAAAAGGCTT-AACTCACC
66 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGG-TTCAACCCACC
34153864 -CTCGCAATATGAGT
1 TCTCGCAATATGAGT
34153878 CAATTTAAAA
Statistics
Matches: 380, Mismatches: 9, Indels: 9
0.95 0.02 0.02
Matches are distributed among these distances:
125 17 0.04
126 162 0.43
127 201 0.53
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (127 bp):
TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
Found at i:34153807 original size:253 final size:252
Alignment explanation
Indices: 34153359--34153952 Score: 917
Period size: 253 Copynumber: 2.4 Consensus size: 252
34153349 TCAACTCATT
34153359 TCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTCA
1 TCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTCA
34153424 ACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACCTCTC
66 ACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACCTCTC
*
34153489 GCAATATGAGTTGATTCTTGACAGACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTCAACT
131 GCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTCAACT
* ** *
34153554 CACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGG-TTCAACCCACC
196 CACCTCTAGCAATATGAGTTGATTTTGAAAAA-CAAAAATGAAAAGGCTT-AACCCACC
34153612 TCTCGCAATATGAGTTG-ATTCTTGACAAACAGAAATTGAAATTACCTCATCGTAT-CTGAGGCT
1 TCTCGCAATATGAGTTGAATT-TTGA-AAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCT
*
34153675 CAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAGAAGGTTCAACCCACCTC
64 CAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACCTC
34153740 TCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTCAA
129 TCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTCAA
*
34153805 CTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATGAAAAGGCTTAACTCACC
194 CTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATGAAAAGGCTTAACCCACC
* * * * ** *
34153864 -CTCGCAATATGAG-TCAA-TTT-AAAAC-----TAGAAA-TACCTCAGCATGCCCCGAGGCTCA
1 TCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTCA
* *
34153919 ACTCACTTCTCGCAATATGAGTTGATTTTGAAAA
66 ACTCACCTCTAGCAATATGAGTTGATTTTGAAAA
34153953 CAAAGATTAA
Statistics
Matches: 320, Mismatches: 16, Indels: 21
0.90 0.04 0.06
Matches are distributed among these distances:
241 9 0.03
242 46 0.14
247 4 0.01
248 1 0.00
249 2 0.01
250 2 0.01
251 14 0.04
252 20 0.06
253 193 0.60
254 29 0.09
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (252 bp):
TCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTCA
ACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACCTCTC
GCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTCAACT
CACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATGAAAAGGCTTAACCCACC
Found at i:34162350 original size:16 final size:17
Alignment explanation
Indices: 34162324--34162355 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
34162314 AGTATGGGAT
34162324 ATGCAATGAATGAATGG
1 ATGCAATGAATGAATGG
34162341 ATGC-ATGAATGAATG
1 ATGCAATGAATGAATG
34162356 CATGGATGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.41, C:0.06, G:0.28, T:0.25
Consensus pattern (17 bp):
ATGCAATGAATGAATGG
Found at i:34164805 original size:3 final size:3
Alignment explanation
Indices: 34164797--34164868 Score: 117
Period size: 3 Copynumber: 24.0 Consensus size: 3
34164787 GTATATACAT
* * *
34164797 ATA ATA ATA ATG ATG ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
34164845 ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA
34164869 TGAAAATACA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 67 1.00
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:34166070 original size:17 final size:17
Alignment explanation
Indices: 34166048--34166081 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
34166038 GACGGGTTAT
34166048 TGGGTTGTTTGGTTTAG
1 TGGGTTGTTTGGTTTAG
34166065 TGGGTTGTTTGGTTTAG
1 TGGGTTGTTTGGTTTAG
34166082 GGCCCAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.06, C:0.00, G:0.41, T:0.53
Consensus pattern (17 bp):
TGGGTTGTTTGGTTTAG
Found at i:34173016 original size:15 final size:15
Alignment explanation
Indices: 34172996--34173067 Score: 50
Period size: 14 Copynumber: 5.1 Consensus size: 15
34172986 ATAATATAAT
34172996 TATTTTTATATTAAA
1 TATTTTTATATTAAA
34173011 TA--TTT-TA--AAA
1 TATTTTTATATTAAA
*
34173021 TA-TTTTATTTTAAA
1 TATTTTTATATTAAA
*
34173035 TTATATTTTGAAATTAAA
1 -TAT-TTTT-ATATTAAA
34173053 TATTTTT-TATTAAA
1 TATTTTTATATTAAA
34173067 T
1 T
34173068 TATATTAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 17
0.68 0.06 0.26
Matches are distributed among these distances:
10 5 0.11
11 3 0.07
12 3 0.07
13 3 0.07
14 10 0.22
15 4 0.09
16 4 0.09
17 7 0.16
18 6 0.13
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.58
Consensus pattern (15 bp):
TATTTTTATATTAAA
Found at i:34173037 original size:29 final size:33
Alignment explanation
Indices: 34172971--34173037 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 33
34172961 TATAATTATC
*
34172971 ATTAAATATAATTTAATAATATAATTATTTTTAT
1 ATTAAATAT-ATTTAATAATATAATTATTTTTAA
*
34173005 ATTAAATAT-TTTAA-AATAT-TTTA-TTTTAA
1 ATTAAATATATTTAATAATATAATTATTTTTAA
34173034 ATTA
1 ATTA
34173038 TATTTTGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
29 9 0.29
30 3 0.10
31 5 0.16
32 5 0.16
34 9 0.29
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (33 bp):
ATTAAATATATTTAATAATATAATTATTTTTAA
Found at i:34173437 original size:44 final size:44
Alignment explanation
Indices: 34173387--34173470 Score: 150
Period size: 44 Copynumber: 1.9 Consensus size: 44
34173377 AATTTTAAAC
* *
34173387 TAAATTATAATTATTTTTAAATGTGTAATTATTACAACTTCTAT
1 TAAATTATAATTATTTTTAAATGTATAATTATCACAACTTCTAT
34173431 TAAATTATAATTATTTTTAAATGTATAATTATCACAACTT
1 TAAATTATAATTATTTTTAAATGTATAATTATCACAACTT
34173471 ATATATAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.40, C:0.07, G:0.04, T:0.49
Consensus pattern (44 bp):
TAAATTATAATTATTTTTAAATGTATAATTATCACAACTTCTAT
Found at i:34174653 original size:7 final size:7
Alignment explanation
Indices: 34174641--34174675 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
34174631 ATCAAGGGAC
34174641 TATACAT
1 TATACAT
34174648 TATACAT
1 TATACAT
34174655 TATACAT
1 TATACAT
34174662 TATACAT
1 TATACAT
34174669 TATACAT
1 TATACAT
34174676 ATGAAATGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (7 bp):
TATACAT
Found at i:34178435 original size:43 final size:43
Alignment explanation
Indices: 34178370--34178528 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 43
34178360 GGAATTAAGA
* * *
34178370 AATTCGAGCTCGTTGAGCGGTCCGAGTTCATGATATAGGTGAG
1 AATTCGAGCTCGTTGAGTGGTCCAAGTTCATGATATATGTGAG
* * *
34178413 AATTCGAACTTGTTGAGTGGTCCAAGTTCGTGATATATGTG-G
1 AATTCGAGCTCGTTGAGTGGTCCAAGTTCATGATATATGTGAG
* * * *** * *
34178455 CATCCGAGCTCCTTGAGTGGTTTGAGTTCATTATAGATGTGAG
1 AATTCGAGCTCGTTGAGTGGTCCAAGTTCATGATATATGTGAG
*
34178498 CA-TCTGAGCTCGTTGAGTGGTCCAAGTTCAT
1 AATTC-GAGCTCGTTGAGTGGTCCAAGTTCAT
34178529 AATGGACGTG
Statistics
Matches: 92, Mismatches: 22, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
42 32 0.35
43 60 0.65
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.33
Consensus pattern (43 bp):
AATTCGAGCTCGTTGAGTGGTCCAAGTTCATGATATATGTGAG
Found at i:34181314 original size:45 final size:45
Alignment explanation
Indices: 34181206--34181512 Score: 435
Period size: 45 Copynumber: 6.9 Consensus size: 45
34181196 TCGAATTCAT
* * * *
34181206 TCACCGGCATT-TCGCCTGCTAGGCTC-GAGGCTCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* **
34181248 TCACCAGCATTATAGTTTGCTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
*
34181293 TCACCGGCATTGTAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
34181338 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
34181383 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
34181428 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
34181473 TCACTGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
34181513 ATCAAATCCA
Statistics
Matches: 240, Mismatches: 19, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
42 10 0.04
43 12 0.05
44 7 0.03
45 210 0.88
46 1 0.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:34184064 original size:45 final size:45
Alignment explanation
Indices: 34183996--34184085 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
34183986 TAGCCAACAC
*
34183996 TTAGGCTATTCTCCAAGCTTTATGTTGTCCTTAATTCTCTCCCAT
1 TTAGGCTATTCTCCAAGCCTTATGTTGTCCTTAATTCTCTCCCAT
*
34184041 TTAGGCTATTTTCCAAGCCTTATGTTGTCCTTAATTCTCTCCCAT
1 TTAGGCTATTCTCCAAGCCTTATGTTGTCCTTAATTCTCTCCCAT
34184086 GCTTATTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.18, C:0.27, G:0.11, T:0.44
Consensus pattern (45 bp):
TTAGGCTATTCTCCAAGCCTTATGTTGTCCTTAATTCTCTCCCAT
Found at i:34185340 original size:16 final size:16
Alignment explanation
Indices: 34185321--34185352 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
34185311 AATTGTTTTA
34185321 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
34185337 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
34185353 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:34185617 original size:50 final size:50
Alignment explanation
Indices: 34185552--34185939 Score: 440
Period size: 50 Copynumber: 7.7 Consensus size: 50
34185542 ATCGAAGCTC
* *
34185552 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * * * *
34185602 TCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* ** *
34185652 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGATCAAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAA
* * *
34185704 -CAGGTACACGTAGTAGCCTGCACGTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* ** * * * *
34185753 TCTGGTACACGTAGTAGCCTGCATTTAGTACTACACACATAACTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * ** *
34185803 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAA
* ** * *
34185855 -CAGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTA-CAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
34185903 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
34185940 CGTGGCTCAC
Statistics
Matches: 277, Mismatches: 55, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
48 2 0.01
49 35 0.13
50 163 0.59
51 75 0.27
52 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
Found at i:34185756 original size:101 final size:100
Alignment explanation
Indices: 34185563--34185941 Score: 352
Period size: 101 Copynumber: 3.8 Consensus size: 100
34185553 CTGGTACGCA
** * *
34185563 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACAAATCAATCAGGTACACGTAGTAGCCTACACGT
* * *
34185628 AGTACTACACACGTGACTTAACCATCTGATACACG
66 AGTACTACACACGCGACCTAACAATCTGATACACG
* *
34185663 TAGTAGCCTGCACTTAGTACTACACATGTGATCAAAGTTAA-CAGGTACACGTAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CAAA-TCAATCAGGTACACGTAGTAGCCTACAC
* * *
34185727 GTAGTACTACACATGCGACCTATCAATCTGGTACACG
64 GTAGTACTACACACGCGACCTAACAATCTGATACACG
* ** * * * * * * *
34185764 TAGTAGCCTGCATTTAGTACTACACACATAACTTAA-CCATCTGATACACGTAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACATGTGAC-AAATCAATCAGGTACACGTAGTAGCCTACACG
* * * * * * ** *
34185828 TAGTACTACACACGTGATCGAAGTTAA-CAGGTATGCA
65 TAGTACTACACACGCGACCTAA--CAATCTGATACACG
* ** * * *
34185865 TAGTAGCCTGCACTTAGTACTACACATGCGACCTA-CAATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACAAATCAATCAGGTACACGTAGTAGCCTACACGT
34185929 AGTACTACACACG
66 AGTACTACACACG
34185942 TGGCTCACAA
Statistics
Matches: 232, Mismatches: 41, Indels: 12
0.81 0.14 0.04
Matches are distributed among these distances:
99 1 0.00
100 111 0.48
101 115 0.50
102 5 0.02
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACAAATCAATCAGGTACACGTAGTAGCCTACACGT
AGTACTACACACGCGACCTAACAATCTGATACACG
Found at i:34185829 original size:151 final size:151
Alignment explanation
Indices: 34185555--34185940 Score: 657
Period size: 151 Copynumber: 2.6 Consensus size: 151
34185545 GAAGCTCTCT
* *
34185555 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * *
34185620 CTACACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACATAACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
*
34185685 CACATGTGATCAAAGTTAACA
131 CACACGTGATCAAAGTTAACA
* *
34185706 GGTACACGTAGTAGCCTGCACGTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
*
34185771 CTGCATTTAGTACTACACACATAACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACATAACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
*
34185836 CACACGTGATCGAAGTTAACA
131 CACACGTGATCAAAGTTAACA
**
34185857 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTA-CAATCTGGTACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
34185921 CTGCACTTAGTACTACACAC
66 CTGCACTTAGTACTACACAC
34185941 GTGGCTCACA
Statistics
Matches: 220, Mismatches: 15, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
150 40 0.18
151 180 0.82
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (151 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACATAACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
CACACGTGATCAAAGTTAACA
Found at i:34186321 original size:19 final size:20
Alignment explanation
Indices: 34186293--34186339 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
34186283 AAGAACATGT
34186293 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
34186314 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
34186333 TATATAT
1 TATATAT
34186340 ATACTTACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:34186612 original size:30 final size:30
Alignment explanation
Indices: 34186555--34186613 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
34186545 CAAAAATCAT
* *
34186555 ACTTTTACAAATTTACATTTTGACCCCTAA
1 ACTTTCACAAATTTACACTTTGACCCCTAA
* * *
34186585 ACTTTCACATATTTGCACTTTGGCCCCTA
1 ACTTTCACAAATTTACACTTTGACCCCTA
34186614 GGCTCGTAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.07, T:0.39
Consensus pattern (30 bp):
ACTTTCACAAATTTACACTTTGACCCCTAA
Found at i:34191359 original size:47 final size:46
Alignment explanation
Indices: 34191272--34191380 Score: 137
Period size: 47 Copynumber: 2.3 Consensus size: 46
34191262 AAAGCTATAG
* * * *
34191272 CCCAGCCATGGTCTTACAAGGATCACATATCACATTGATGCCATAT
1 CCCAGACATGGTCTTACAAGAAGCACATATCACACTGATGCCATAT
** * *
34191318 CCCAGATGTGGTCTTACATAGAAGCTCATATCACACTGATGCCATGT
1 CCCAGACATGGTCTTACA-AGAAGCACATATCACACTGATGCCATAT
34191365 CCCAGACATGGTCTTA
1 CCCAGACATGGTCTTA
34191381 TACGGGAACA
Statistics
Matches: 52, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
46 15 0.29
47 37 0.71
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (46 bp):
CCCAGACATGGTCTTACAAGAAGCACATATCACACTGATGCCATAT
Found at i:34192436 original size:40 final size:40
Alignment explanation
Indices: 34192392--34192479 Score: 167
Period size: 40 Copynumber: 2.2 Consensus size: 40
34192382 GTCCAACCCA
*
34192392 TATTATTTTGGGCAAAATTGCTCTTTAAGTCTCTCTTATT
1 TATTATTTTGGGAAAAATTGCTCTTTAAGTCTCTCTTATT
34192432 TATTATTTTGGGAAAAATTGCTCTTTAAGTCTCTCTTATT
1 TATTATTTTGGGAAAAATTGCTCTTTAAGTCTCTCTTATT
34192472 TATTATTT
1 TATTATTT
34192480 AAGTCATTTA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.24, C:0.12, G:0.11, T:0.52
Consensus pattern (40 bp):
TATTATTTTGGGAAAAATTGCTCTTTAAGTCTCTCTTATT
Found at i:34198357 original size:24 final size:23
Alignment explanation
Indices: 34198320--34198364 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
34198310 TGGAATCGGA
34198320 AAAAAAACGTAAAAAAATTTCTG
1 AAAAAAACGTAAAAAAATTTCTG
34198343 AAAAAAACGTAAAAAAATTTCT
1 AAAAAAACGTAAAAAAATTTCT
34198365 ATCTTTCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.62, C:0.09, G:0.07, T:0.22
Consensus pattern (23 bp):
AAAAAAACGTAAAAAAATTTCTG
Found at i:34202802 original size:71 final size:67
Alignment explanation
Indices: 34202723--34202860 Score: 195
Period size: 67 Copynumber: 2.0 Consensus size: 67
34202713 TCACTAGATA
* * *
34202723 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTGCAGCGA
34202788 GGCTGC
62 GGCTGC
* *
34202794 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
34202859 GC
66 GC
34202861 TAGAACGCTT
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
67 37 0.60
71 25 0.40
ACGTcount: A:0.30, C:0.22, G:0.29, T:0.19
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
GC
Found at i:34202842 original size:27 final size:26
Alignment explanation
Indices: 34202794--34202845 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
34202784 GCGAGGCTGC
*
34202794 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
34202820 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
34202846 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:34203516 original size:27 final size:27
Alignment explanation
Indices: 34203486--34203663 Score: 266
Period size: 27 Copynumber: 6.6 Consensus size: 27
34203476 GGGGAAAAAT
* * * *
34203486 GGTAATTTTACCCTATAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
34203513 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
34203540 GATAATTCTACCCTACAGGGTTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
34203567 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
34203594 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
34203621 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
34203648 GGTAATTCTACCCTAC
1 GGTAATTCTACCCTAC
34203664 GGACCCATTG
Statistics
Matches: 137, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 137 1.00
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:34205770 original size:37 final size:37
Alignment explanation
Indices: 34205712--34205856 Score: 218
Period size: 37 Copynumber: 3.9 Consensus size: 37
34205702 TAGCTCGAAT
* *
34205712 AATCCCCACACGTAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
34205749 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
* * *
34205786 AATCTCCACACATAGTTATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
* * *
34205823 AATCTCCACACGTAGTCATCAGGACTTATCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
34205857 ATATATTTCC
Statistics
Matches: 98, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:34206049 original size:48 final size:48
Alignment explanation
Indices: 34205989--34206286 Score: 497
Period size: 48 Copynumber: 6.2 Consensus size: 48
34205979 CGGCCACAAT
* *
34205989 ATATACACATCTCATACATATTTCACATTAGCCATTCGGCTTTACAAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
*
34206037 ATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* **
34206085 ATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
34206133 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
34206181 ATATATATATCTCATACATATTTCATATTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
*
34206229 ATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* *
34206277 ACATATATAT
1 ATATACATAT
34206287 ATTTATCTTG
Statistics
Matches: 233, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 233 1.00
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.36
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
Found at i:34214311 original size:71 final size:67
Alignment explanation
Indices: 34214234--34214375 Score: 158
Period size: 67 Copynumber: 2.1 Consensus size: 67
34214224 TCACCAGATA
* * * *
34214234 CAGATATTATGGCTAGGCCACCAGAACAGATATATATATGTGGTGAAACCACCAGATCGCAGCGA
1 CAGATATTATGACGAAGCCACCAGAACAG--ATAT-T-TGTGGCGAAACCACCAGATCGCAGCGA
34214299 GGCTGC
62 GGCTGC
* ** ** *
34214305 CAGATATTGTGACGAAGTTACCAGAACAGATATTTGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTATGACGAAGCCACCAGAACAGATATTTGTGGCGAAACCACCAGATCGCAGCGAGGCT
34214370 GC
66 GC
34214372 CAGA
1 CAGA
34214376 ACGCTTCCTC
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
67 33 0.54
68 1 0.02
69 4 0.07
71 23 0.38
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.20
Consensus pattern (67 bp):
CAGATATTATGACGAAGCCACCAGAACAGATATTTGTGGCGAAACCACCAGATCGCAGCGAGGCT
GC
Found at i:34214982 original size:26 final size:27
Alignment explanation
Indices: 34214953--34215006 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
34214943 TCACACAAGT
*
34214953 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
34214979 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
34215006 T
1 T
34215007 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:34215037 original size:27 final size:27
Alignment explanation
Indices: 34215007--34215179 Score: 238
Period size: 27 Copynumber: 6.4 Consensus size: 27
34214997 GGGGCAAAAT
* * * *
34215007 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
34215034 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
34215061 GGTATTTCTAACCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
34215088 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
34215115 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
34215142 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
34215169 GGTAATTCTAC
1 GGTAATTCTAC
34215180 AACTTATCCA
Statistics
Matches: 127, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:34217570 original size:12 final size:12
Alignment explanation
Indices: 34217553--34217579 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
34217543 GTGCATCAAA
34217553 TTCGATTCATTT
1 TTCGATTCATTT
34217565 TTCGATTCATTT
1 TTCGATTCATTT
34217577 TTC
1 TTC
34217580 ACATACTCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.19, G:0.07, T:0.59
Consensus pattern (12 bp):
TTCGATTCATTT
Found at i:34221065 original size:46 final size:46
Alignment explanation
Indices: 34221015--34221187 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
34221005 TGGTTGAGCA
34221015 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
34221061 TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
34221106 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
34221154 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
34221188 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.56
47 27 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:34221171 original size:93 final size:93
Alignment explanation
Indices: 34221012--34221182 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
34221002 GGATGGTTGA
* * *
34221012 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
34221077 TGAGTTCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
34221105 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
34221170 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
34221183 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:34228680 original size:45 final size:46
Alignment explanation
Indices: 34228562--34228686 Score: 216
Period size: 46 Copynumber: 2.7 Consensus size: 46
34228552 TGGTTGAGCA
*
34228562 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
34228608 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
34228654 -CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
34228687 GGGGCGGGTT
Statistics
Matches: 76, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
45 31 0.41
46 45 0.59
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:34238544 original size:18 final size:18
Alignment explanation
Indices: 34238521--34238561 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
34238511 GGGTCGAAAT
*
34238521 GGGCTAAATGGGCTCGAG
1 GGGCTAAATGGGCCCGAG
*
34238539 GGGCT-ATTGGGCCCGAG
1 GGGCTAAATGGGCCCGAG
34238556 GGGCTA
1 GGGCTA
34238562 TTGGGCCCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.17, C:0.20, G:0.46, T:0.17
Consensus pattern (18 bp):
GGGCTAAATGGGCCCGAG
Found at i:34238555 original size:17 final size:17
Alignment explanation
Indices: 34238529--34238569 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
34238519 ATGGGCTAAA
*
34238529 TGGGCTCGAGGGGCTAT
1 TGGGCCCGAGGGGCTAT
34238546 TGGGCCCGAGGGGCTAT
1 TGGGCCCGAGGGGCTAT
34238563 TGGGCCC
1 TGGGCCC
34238570 ATATTAGGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.10, C:0.24, G:0.46, T:0.20
Consensus pattern (17 bp):
TGGGCCCGAGGGGCTAT
Found at i:34238670 original size:29 final size:29
Alignment explanation
Indices: 34238641--34238775 Score: 127
Period size: 29 Copynumber: 4.7 Consensus size: 29
34238631 ATAATGTGAT
34238641 TTGGGCCGGATGGGCCATA-GAAATGAGA
1 TTGGGCCGGATGGGCCATATGAAATGAGA
** *
34238669 TTGGGCCTAATGGGCCATATG-AATGTGAA
1 TTGGGCCGGATGGGCCATATGAAATGAG-A
* *
34238698 TTGGGCCTGATGGGCCATATGAACGTGA-A
1 TTGGGCCGGATGGGCCATATGAA-ATGAGA
* *
34238727 TTGGGTCGGATGGGCTATAT-AAATGAGA
1 TTGGGCCGGATGGGCCATATGAAATGAGA
* *
34238755 TTGGACC-TAGTGGGCCATATG
1 TTGGGCCGGA-TGGGCCATATG
34238776 CATGTATGTA
Statistics
Matches: 86, Mismatches: 14, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
27 4 0.05
28 39 0.45
29 40 0.47
30 1 0.01
31 2 0.02
ACGTcount: A:0.26, C:0.14, G:0.35, T:0.25
Consensus pattern (29 bp):
TTGGGCCGGATGGGCCATATGAAATGAGA
Found at i:34238758 original size:57 final size:58
Alignment explanation
Indices: 34238641--34238775 Score: 143
Period size: 57 Copynumber: 2.4 Consensus size: 58
34238631 ATAATGTGAT
* * * *
34238641 TTGGGCCGGATGGGCCATA-GAAATGAGATTGGGCCTAATGGGCCATATGAATGTGAA
1 TTGGGCCTGATGGGCCATATGAAATGAGATTGGGCCGAATGGGCCATATAAATGAGAA
* * * *
34238698 TTGGGCCTGATGGGCCATATGAACGTGA-ATTGGGTCGGATGGGCTATATAAATGAG-A
1 TTGGGCCTGATGGGCCATATGAA-ATGAGATTGGGCCGAATGGGCCATATAAATGAGAA
*
34238755 TTGGACCT-AGTGGGCCATATG
1 TTGGGCCTGA-TGGGCCATATG
34238776 CATGTATGTA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
56 1 0.02
57 37 0.56
58 25 0.38
59 3 0.05
ACGTcount: A:0.26, C:0.14, G:0.35, T:0.25
Consensus pattern (58 bp):
TTGGGCCTGATGGGCCATATGAAATGAGATTGGGCCGAATGGGCCATATAAATGAGAA
Found at i:34242991 original size:16 final size:16
Alignment explanation
Indices: 34242967--34243009 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
34242957 GTAGATCGGT
34242967 AAAAGCTGAAATACCG
1 AAAAGCTGAAATACCG
* *
34242983 AAAATCTGAAATGCCG
1 AAAAGCTGAAATACCG
34242999 AAAAGCTGAAA
1 AAAAGCTGAAA
34243010 GTTTGGCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.51, C:0.16, G:0.19, T:0.14
Consensus pattern (16 bp):
AAAAGCTGAAATACCG
Found at i:34243243 original size:29 final size:29
Alignment explanation
Indices: 34243214--34243348 Score: 127
Period size: 28 Copynumber: 4.7 Consensus size: 29
34243204 ATAATGTGAT
*
34243214 TTGGGCCGGATGGGCCATA-GAAATGAGA
1 TTGGGCCTGATGGGCCATATGAAATGAGA
* * *
34243242 TTGGGCCTAATGGGCTATATG-AATGTGAA
1 TTGGGCCTGATGGGCCATATGAAATGAG-A
* *
34243271 TTGGGCCTGATGGGTCATATGAACGTGA-A
1 TTGGGCCTGATGGGCCATATGAA-ATGAGA
*
34243300 TTGGGCCAGATGGGCCATAT-AAATGAGA
1 TTGGGCCTGATGGGCCATATGAAATGAGA
* *
34243328 ATGGGCAT-AGTGGGCCATATG
1 TTGGGCCTGA-TGGGCCATATG
34243349 CATGTATGTA
Statistics
Matches: 85, Mismatches: 15, Indels: 13
0.75 0.13 0.12
Matches are distributed among these distances:
27 4 0.05
28 39 0.46
29 39 0.46
30 1 0.01
31 2 0.02
ACGTcount: A:0.27, C:0.13, G:0.35, T:0.24
Consensus pattern (29 bp):
TTGGGCCTGATGGGCCATATGAAATGAGA
Found at i:34257483 original size:41 final size:46
Alignment explanation
Indices: 34257413--34257532 Score: 144
Period size: 41 Copynumber: 2.7 Consensus size: 46
34257403 ATTCTATCTC
* * *
34257413 ATATCGATGCCATTGTCCCAGACAGGGTCTTACAT-G-AATCA-A-
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACATCGTAACCACAT
*
34257455 ATA-CGATGCCAATGTCCCAAACATGGTCTTAC-TCGTAACCACAT
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACATCGTAACCACAT
* *
34257499 ATATCGATGCCAACGTCCCAGACGTGGTCTTACA
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACA
34257533 AGAGAACACA
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
40 1 0.02
41 27 0.42
42 7 0.11
43 1 0.02
44 3 0.05
45 26 0.40
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (46 bp):
ATATCGATGCCAATGTCCCAGACATGGTCTTACATCGTAACCACAT
Found at i:34257543 original size:45 final size:44
Alignment explanation
Indices: 34257413--34257545 Score: 130
Period size: 45 Copynumber: 3.0 Consensus size: 44
34257403 ATTCTATCTC
* * *
34257413 ATATCGATGCCATTGTCCCAGACAG-GGTCTTACATGAATCA-A-
1 ATATCGATGCCAATGTCCCAGAC-GTGGTCTTACAAGAAACACAT
* * ** *
34257455 ATA-CGATGCCAATGTCCCAAACATGGTCTTACTCGTAACCACAT
1 ATATCGATGCCAATGTCCCAGACGTGGTCTTACAAG-AAACACAT
*
34257499 ATATCGATGCCAACGTCCCAGACGTGGTCTTACAAGAGAACACAT
1 ATATCGATGCCAATGTCCCAGACGTGGTCTTACAAGA-AACACAT
34257544 AT
1 AT
34257546 CTGAAATCCT
Statistics
Matches: 73, Mismatches: 12, Indels: 9
0.78 0.13 0.10
Matches are distributed among these distances:
41 26 0.36
42 7 0.10
43 1 0.01
44 4 0.05
45 35 0.48
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.24
Consensus pattern (44 bp):
ATATCGATGCCAATGTCCCAGACGTGGTCTTACAAGAAACACAT
Found at i:34259842 original size:40 final size:40
Alignment explanation
Indices: 34259763--34259939 Score: 189
Period size: 40 Copynumber: 4.5 Consensus size: 40
34259753 CGGATGATAA
* * **
34259763 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
* * * * *
34259803 TCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-CTATAT
* *
34259843 CCGGACTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
* *
34259883 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
*
34259923 -CTGGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
34259940 ATACTTGGGT
Statistics
Matches: 115, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 16 0.14
40 96 0.83
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
Found at i:34259898 original size:80 final size:80
Alignment explanation
Indices: 34259763--34259939 Score: 243
Period size: 80 Copynumber: 2.2 Consensus size: 80
34259753 CGGATGATAA
* * * *
34259763 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATTCGGGCTATGTCCCGAAGGCATTTA
1 CCGGACTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
*
34259828 TGCTAG-TGATTATAT
66 TGCGAGTTG-TTATAT
* *
34259843 CCGGACTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGACTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
34259908 TGCGAGTTGTTATAT
66 TGCGAGTTGTTATAT
*
34259923 CTGG-CTAA-ATCCCGAAG
1 CCGGACTAAGA-CCCGAAG
34259940 ATACTTGGGT
Statistics
Matches: 87, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
78 1 0.01
79 11 0.13
80 73 0.84
81 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
CCGGACTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
TGCGAGTTGTTATAT
Found at i:34262055 original size:25 final size:25
Alignment explanation
Indices: 34262026--34262075 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
34262016 CATTATCTTA
34262026 CCATTTC-ATCATATAAATATATCAT
1 CCATTTCAAT-ATATAAATATATCAT
*
34262051 CCATTTCAATATATCAATATATCAT
1 CCATTTCAATATATAAATATATCAT
34262076 GTATTGCCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 21 0.91
26 2 0.09
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (25 bp):
CCATTTCAATATATAAATATATCAT
Found at i:34267970 original size:40 final size:40
Alignment explanation
Indices: 34267906--34267981 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
34267896 TATACATATA
* * *
34267906 TAGCCGAAGCTATCTCCAATCGCACACCAAGTGCCACATT
1 TAGCCGAAGCTATCTCAAACCGCACAACAAGTGCCACATT
* *
34267946 TAGCCGAAGCTATTTCAAACCGCACAATAAGTGCCA
1 TAGCCGAAGCTATCTCAAACCGCACAACAAGTGCCA
34267982 TTTTATTTAG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.33, C:0.32, G:0.16, T:0.20
Consensus pattern (40 bp):
TAGCCGAAGCTATCTCAAACCGCACAACAAGTGCCACATT
Found at i:34271918 original size:11 final size:10
Alignment explanation
Indices: 34271893--34271953 Score: 54
Period size: 10 Copynumber: 6.1 Consensus size: 10
34271883 ACCAATAAAA
34271893 TAAA-TGAGC
1 TAAATTGAGC
*
34271902 TGAATTGTAGC
1 TAAATTG-AGC
34271913 TAAATTGAGC
1 TAAATTGAGC
**
34271923 TCGATTGAGC
1 TAAATTGAGC
34271933 TGAAA-TGAGC
1 T-AAATTGAGC
*
34271943 TCAATTGAGC
1 TAAATTGAGC
34271953 T
1 T
34271954 GGTCGGAGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
9 5 0.12
10 26 0.63
11 10 0.24
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.30
Consensus pattern (10 bp):
TAAATTGAGC
Found at i:34271954 original size:20 final size:20
Alignment explanation
Indices: 34271894--34271954 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
34271884 CCAATAAAAT
*
34271894 AAATGAGCTGAATTGTAGCT-
1 AAATGAGCTCAATTG-AGCTG
*
34271914 AAATTGAGCTCGATTGAGCTG
1 AAA-TGAGCTCAATTGAGCTG
34271935 AAATGAGCTCAATTGAGCTG
1 AAATGAGCTCAATTGAGCTG
34271955 GTCGGAGTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (20 bp):
AAATGAGCTCAATTGAGCTG
Found at i:34274013 original size:33 final size:33
Alignment explanation
Indices: 34273975--34274037 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
34273965 GATTACTCAC
34273975 TTCACTCG-TTTCTTTT-ATAGACTCTCTTTCTTT
1 TTCACTCGATTTCTTTTCA-AG-CTCTCTTTCTTT
*
34274008 TTCACTTGATTTCTTTTCAAGCTCTCTTTC
1 TTCACTCGATTTCTTTTCAAGCTCTCTTTC
34274038 AATTTCTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.13, C:0.25, G:0.06, T:0.56
Consensus pattern (33 bp):
TTCACTCGATTTCTTTTCAAGCTCTCTTTCTTT
Found at i:34274064 original size:21 final size:21
Alignment explanation
Indices: 34274035--34274090 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 21
34274025 CAAGCTCTCT
*
34274035 TTCAATTTCTTTTTTCGCTTT-
1 TTCATTTTCTTTTTTC-CTTTC
* ** *
34274056 TTCTTTTTCAATTTTCTTTTC
1 TTCATTTTCTTTTTTCCTTTC
34274077 TTCATTTTCTTTTT
1 TTCATTTTCTTTTT
34274091 CTCTCACTTT
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
20 3 0.12
21 23 0.88
ACGTcount: A:0.09, C:0.18, G:0.02, T:0.71
Consensus pattern (21 bp):
TTCATTTTCTTTTTTCCTTTC
Found at i:34274083 original size:14 final size:14
Alignment explanation
Indices: 34274034--34274090 Score: 57
Period size: 14 Copynumber: 4.1 Consensus size: 14
34274024 TCAAGCTCTC
34274034 TTTCAA-TTTCTTT
1 TTTCAATTTTCTTT
**
34274047 TTTCGCTTTT-TCTT
1 TTTCAATTTTCT-TT
34274061 TTTCAATTTTCTTT
1 TTTCAATTTTCTTT
34274075 TCTTC-ATTTTCTTT
1 T-TTCAATTTTCTTT
34274089 TT
1 TT
34274091 CTCTCACTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
13 6 0.17
14 26 0.72
15 4 0.11
ACGTcount: A:0.09, C:0.18, G:0.02, T:0.72
Consensus pattern (14 bp):
TTTCAATTTTCTTT
Found at i:34274154 original size:6 final size:6
Alignment explanation
Indices: 34274052--34274141 Score: 58
Period size: 6 Copynumber: 14.7 Consensus size: 6
34274042 TCTTTTTTCG
* * * **
34274052 CTTTTT CTTTTT CAATTTT CTTTTCTT CATTTT CTTTTT CTCTCA CTTTTT
1 CTTTTT CTTTTT C-TTTTT C-TTT-TT CTTTTT CTTTTT CTTTTT CTTTTT
* * *
34274103 -TGATTT CTTTTT CTTTTT CGTTTT CTTTTT -GTTTT CTTT
1 CT-TTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTT
34274142 CAATTTCTTT
Statistics
Matches: 62, Mismatches: 17, Indels: 10
0.70 0.19 0.11
Matches are distributed among these distances:
5 5 0.08
6 44 0.71
7 10 0.16
8 3 0.05
ACGTcount: A:0.06, C:0.18, G:0.03, T:0.73
Consensus pattern (6 bp):
CTTTTT
Found at i:34275172 original size:10 final size:10
Alignment explanation
Indices: 34275159--34275184 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
34275149 GACTTTTCAC
34275159 TTTTTTTTCT
1 TTTTTTTTCT
34275169 TTTTTTTTCT
1 TTTTTTTTCT
34275179 TTTTTT
1 TTTTTT
34275185 CTTTTAACTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:34275341 original size:12 final size:12
Alignment explanation
Indices: 34275326--34275356 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
34275316 CCAACTCAAA
34275326 TTTTTTTTTGA-
1 TTTTTTTTTGAC
34275337 TTTTTTTTTGAC
1 TTTTTTTTTGAC
34275349 TTTTTTTT
1 TTTTTTTT
34275357 ACATTACGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.58
12 8 0.42
ACGTcount: A:0.06, C:0.03, G:0.06, T:0.84
Consensus pattern (12 bp):
TTTTTTTTTGAC
Found at i:34276637 original size:11 final size:10
Alignment explanation
Indices: 34276612--34276672 Score: 54
Period size: 10 Copynumber: 6.1 Consensus size: 10
34276602 ACCAATAAAA
34276612 TAAA-TGAGC
1 TAAATTGAGC
*
34276621 TGAATTGTAGC
1 TAAATTG-AGC
34276632 TAAATTGAGC
1 TAAATTGAGC
**
34276642 TCGATTGAGC
1 TAAATTGAGC
34276652 TGAAA-TGAGC
1 T-AAATTGAGC
*
34276662 TCAATTGAGC
1 TAAATTGAGC
34276672 T
1 T
34276673 GGTCGGAGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
9 5 0.12
10 26 0.63
11 10 0.24
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.30
Consensus pattern (10 bp):
TAAATTGAGC
Found at i:34276673 original size:20 final size:20
Alignment explanation
Indices: 34276613--34276673 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
34276603 CCAATAAAAT
*
34276613 AAATGAGCTGAATTGTAGCT-
1 AAATGAGCTCAATTG-AGCTG
*
34276633 AAATTGAGCTCGATTGAGCTG
1 AAA-TGAGCTCAATTGAGCTG
34276654 AAATGAGCTCAATTGAGCTG
1 AAATGAGCTCAATTGAGCTG
34276674 GTCGGAGTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (20 bp):
AAATGAGCTCAATTGAGCTG
Found at i:34281423 original size:42 final size:41
Alignment explanation
Indices: 34281375--34281698 Score: 227
Period size: 42 Copynumber: 7.3 Consensus size: 41
34281365 ATAGTCCAAC
*
34281375 TATGGTCTTACACAAAGTCTCACATCGATGCCATGTCCCAGA
1 TATGGTCTTACAC-AAGTCTCATATCGATGCCATGTCCCAGA
* * * * ***
34281417 CATGGTCTTATACAAAATCACATATCGATGCCGCATCCCAGA
1 TATGGTCTTACAC-AAGTCTCATATCGATGCCATGTCCCAGA
* * * * * * *
34281459 CACGGTCTTACATGAAATCTCATACCGAAGCCATATCCCAGA
1 TATGGTCTTACA-CAAGTCTCATATCGATGCCATGTCCCAGA
34281501 TATGGTCTTACACGTAA-TCTCATATCGATGCCGATGTTATATCCCAGA
1 TATGGTCTTACAC--AAGTCTCATATCGATGCC-ATG-----TCCCAGA
*
34281549 TATGGTCTTACACAAGATCTCATATCGATGCTAATGTCATATGCCAGA
1 TATGGTCTTACACAAG-TCTCATATCGATGC-CATGTC-----CCAGA
* *
34281597 TATGGTCTTACACAAGATCTCATATCAATGCTGATGCCATATCCCAAA
1 TATGGTCTTACACAAG-TCTC--AT--AT-C-GATGCCATGTCCCAGA
*
34281645 TATGGTCTTACACAGGATCTCATATCGATGCCATGTCCCAGA
1 TATGGTCTTACACAAG-TCTCATATCGATGCCATGTCCCAGA
*
34281687 CATGGTCTTACA
1 TATGGTCTTACA
34281699 TGTATCACAA
Statistics
Matches: 229, Mismatches: 30, Indels: 46
0.75 0.10 0.15
Matches are distributed among these distances:
42 115 0.50
43 7 0.03
44 2 0.01
46 4 0.02
48 87 0.38
50 2 0.01
52 2 0.01
53 5 0.02
54 5 0.02
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (41 bp):
TATGGTCTTACACAAGTCTCATATCGATGCCATGTCCCAGA
Found at i:34281544 original size:48 final size:48
Alignment explanation
Indices: 34281490--34281681 Score: 271
Period size: 48 Copynumber: 4.0 Consensus size: 48
34281480 ATACCGAAGC
*
34281490 CATATCCCAGATATGGTCTTACACGTA-ATCTCATATCGATGCCGATGT
1 CATATCCCAGATATGGTCTTACAC-AAGATCTCATATCGATGCCGATGT
* **
34281538 TATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCTAATGT
1 CATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCCGATGT
* * * *
34281586 CATATGCCAGATATGGTCTTACACAAGATCTCATATCAATGCTGATGC
1 CATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCCGATGT
* *
34281634 CATATCCCAAATATGGTCTTACACAGGATCTCATATCGATGCC-ATGT
1 CATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCCGATGT
34281681 C
1 C
34281682 CCAGACATGG
Statistics
Matches: 128, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
47 5 0.04
48 123 0.96
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.31
Consensus pattern (48 bp):
CATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCCGATGT
Found at i:34281759 original size:37 final size:37
Alignment explanation
Indices: 34281688--34281845 Score: 203
Period size: 37 Copynumber: 4.3 Consensus size: 37
34281678 TGTCCCAGAC
* *
34281688 ATGGTCTTACATG-TATCACAATGCTATAGCCCAGCT
1 ATGGTCTTACATGCTATCACAATGCCATAACCCAGCT
* *
34281724 ATGGTCTTACATG-TCATCACGATGCCATAAACCAGCT
1 ATGGTCTTACATGCT-ATCACAATGCCATAACCCAGCT
* * *
34281761 ATGGCCTTACATGCTATTACGATGCCATAACCCAGCT
1 ATGGTCTTACATGCTATCACAATGCCATAACCCAGCT
* * *
34281798 ATGGCCTTACATGCTATTACAATGCCATAGCCCAGCT
1 ATGGTCTTACATGCTATCACAATGCCATAACCCAGCT
34281835 ATGGTCTTACA
1 ATGGTCTTACA
34281846 CGTACAACAT
Statistics
Matches: 110, Mismatches: 10, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
36 14 0.13
37 95 0.86
38 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.28
Consensus pattern (37 bp):
ATGGTCTTACATGCTATCACAATGCCATAACCCAGCT
Found at i:34284356 original size:28 final size:28
Alignment explanation
Indices: 34284324--34284400 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 28
34284314 ATCTTCGATG
34284324 TCTCGTACACTAAGTGCCATACTCAATA
1 TCTCGTACACTAAGTGCCATACTCAATA
* * * *
34284352 TCTCGCACACCAAGTGCCATTCTTAATA
1 TCTCGTACACTAAGTGCCATACTCAATA
* *
34284380 TTTTGTACACTAAGTGCCATA
1 TCTCGTACACTAAGTGCCATA
34284401 TACATATATA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.31
Consensus pattern (28 bp):
TCTCGTACACTAAGTGCCATACTCAATA
Found at i:34291509 original size:48 final size:48
Alignment explanation
Indices: 34291403--34291582 Score: 184
Period size: 48 Copynumber: 3.7 Consensus size: 48
34291393 GGTTATGTGT
* * *** *
34291403 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGTTATAA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGA
* * *
34291451 GATCTC-GTGTAAGACCATGCCTGGGACATGGCATCGGCCTCAATATGC
1 GAGC-CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGA
* * * *
34291499 GAGCCAGTGTAAGACCATGTCTGAGACATGGCATCGACACTGATGTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCA-ATATGA
* *
34291549 GAGCCAGTGTAGGACCGTG-CTGGGACATGGCATC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
34291583 AAAATTTTAC
Statistics
Matches: 109, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
47 1 0.01
48 69 0.63
49 18 0.17
50 21 0.19
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.23
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGA
Found at i:34293218 original size:46 final size:44
Alignment explanation
Indices: 34293136--34293304 Score: 142
Period size: 46 Copynumber: 3.7 Consensus size: 44
34293126 TCTTAGCCAG
*
34293136 TGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTTGAGGTCGA
1 TGCATGTCCCAGACATGTCTTACACTAGCCT-CGTCTTGAGG-CGA
* ** * *
34293182 TGCATGTCCTAGACATGTCTTACACTAGCACTCGTCTCAATGCCA
1 TGCATGTCCCAGACATGTCTTACACTAGC-CTCGTCTTGAGGCGA
** * * * *
34293227 GTGCCATGTCGTAGACATGGTCTTACACT-GGCTCTTATAATGTGGCTGA
1 -TG-CATGTCCCAGACAT-GTCTTACACTAGCCTCGTCT--TGAGGC-GA
34293276 TGCATGTCCCAGACATGTCTTACACTAGC
1 TGCATGTCCCAGACATGTCTTACACTAGC
34293305 TCACATAAAT
Statistics
Matches: 97, Mismatches: 18, Indels: 15
0.75 0.14 0.12
Matches are distributed among these distances:
45 2 0.02
46 52 0.54
47 28 0.29
48 14 0.14
49 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (44 bp):
TGCATGTCCCAGACATGTCTTACACTAGCCTCGTCTTGAGGCGA
Found at i:34293250 original size:94 final size:91
Alignment explanation
Indices: 34293131--34293304 Score: 217
Period size: 94 Copynumber: 1.9 Consensus size: 91
34293121 ACAACTCTTA
** *
34293131 GCCAGTGCATGTCCCAGACATGTCTTACACTAG-CTTACGTCTTGAGG-TCGATGCATGTCCTAG
1 GCCAGTGCATGTCCCAGACATGTCTTACACTAGCCTTA--TAATGAGGCT-GATGCATGTCCCAG
34293194 ACATGTCTTACACTAGCACTCGTCTCAAT
63 ACATGTCTTACACTAGCACTCGTCTCAAT
** * *
34293223 GCCAGTGCCATGTCGTAGACATGGTCTTACACTGGCTCTTATAATGTGGCTGATGCATGTCCCAG
1 GCCAGTG-CATGTCCCAGACAT-GTCTTACACTAGC-CTTATAATGAGGCTGATGCATGTCCCAG
34293288 ACATGTCTTACACTAGC
63 ACATGTCTTACACTAGC
34293305 TCACATAAAT
Statistics
Matches: 70, Mismatches: 7, Indels: 8
0.82 0.08 0.09
Matches are distributed among these distances:
92 7 0.10
93 12 0.17
94 46 0.66
95 1 0.01
96 4 0.06
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.29
Consensus pattern (91 bp):
GCCAGTGCATGTCCCAGACATGTCTTACACTAGCCTTATAATGAGGCTGATGCATGTCCCAGACA
TGTCTTACACTAGCACTCGTCTCAAT
Found at i:34302243 original size:32 final size:32
Alignment explanation
Indices: 34302202--34302266 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
34302192 ATTAATAAAG
34302202 TTAGCCTAATAATGAACACAAATATGTGCACA
1 TTAGCCTAATAATGAACACAAATATGTGCACA
34302234 TTAGCCTAATAATGAACACAAATATGTGCACA
1 TTAGCCTAATAATGAACACAAATATGTGCACA
34302266 T
1 T
34302267 AATTTATGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.26
Consensus pattern (32 bp):
TTAGCCTAATAATGAACACAAATATGTGCACA
Found at i:34302829 original size:22 final size:22
Alignment explanation
Indices: 34302804--34302848 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
34302794 ATTATGTGTA
*
34302804 TTAATTCATAATTTAA-TTAATT
1 TTAATTCAT-ATTCAATTTAATT
*
34302826 TTAATTTATATTCAATTTAATT
1 TTAATTCATATTCAATTTAATT
34302848 T
1 T
34302849 GGGTTAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (22 bp):
TTAATTCATATTCAATTTAATT
Found at i:34305118 original size:43 final size:43
Alignment explanation
Indices: 34305068--34305150 Score: 123
Period size: 43 Copynumber: 1.9 Consensus size: 43
34305058 GATATATGTG
*
34305068 GCATCCGAGCTCGATGAGTGG-TCCAAGTTCATTATGGATGCGA
1 GCATCCGAGCTCGATGAGTGGCT-CAAGTTCATAATGGATGCGA
* *
34305111 GCATCCGAGCTCGTTGAGTGGCTCGAGTTCATAATGGATG
1 GCATCCGAGCTCGATGAGTGGCTCAAGTTCATAATGGATG
34305151 TAATACATGT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 35 0.97
44 1 0.03
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.27
Consensus pattern (43 bp):
GCATCCGAGCTCGATGAGTGGCTCAAGTTCATAATGGATGCGA
Found at i:34305989 original size:18 final size:18
Alignment explanation
Indices: 34305966--34306020 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
34305956 GTATGTCTCG
34305966 ATGCATTGATGGTGTTTT
1 ATGCATTGATGGTGTTTT
**
34305984 ATGCA-TGCAT-GTG-TCG
1 ATGCATTG-ATGGTGTTTT
*
34306000 ATGCATTGATGATGTTTT
1 ATGCATTGATGGTGTTTT
34306018 ATG
1 ATG
34306021 TGGTTGTGTG
Statistics
Matches: 28, Mismatches: 5, Indels: 8
0.68 0.12 0.20
Matches are distributed among these distances:
16 8 0.29
17 9 0.32
18 11 0.39
ACGTcount: A:0.20, C:0.09, G:0.27, T:0.44
Consensus pattern (18 bp):
ATGCATTGATGGTGTTTT
Found at i:34306001 original size:34 final size:34
Alignment explanation
Indices: 34305950--34306020 Score: 115
Period size: 34 Copynumber: 2.1 Consensus size: 34
34305940 CTAATTGTTC
* *
34305950 ATGCATGTATGTCTCGATGCATTGATGGTGTTTT
1 ATGCATGCATGTCTCGATGCATTGATGATGTTTT
*
34305984 ATGCATGCATGTGTCGATGCATTGATGATGTTTT
1 ATGCATGCATGTCTCGATGCATTGATGATGTTTT
34306018 ATG
1 ATG
34306021 TGGTTGTGTG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.20, C:0.11, G:0.27, T:0.42
Consensus pattern (34 bp):
ATGCATGCATGTCTCGATGCATTGATGATGTTTT
Found at i:34310312 original size:21 final size:21
Alignment explanation
Indices: 34310286--34310325 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
34310276 GATTTCCAAC
34310286 TGGTAATGGTCAAAATTGGAA
1 TGGTAATGGTCAAAATTGGAA
34310307 TGGTAATGGTCAAAATTGG
1 TGGTAATGGTCAAAATTGG
34310326 GGTGTCTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.05, G:0.30, T:0.30
Consensus pattern (21 bp):
TGGTAATGGTCAAAATTGGAA
Found at i:34319590 original size:17 final size:18
Alignment explanation
Indices: 34319568--34319601 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
34319558 AATTTTGAAA
34319568 TTTAT-AGTATCAATACT
1 TTTATAAGTATCAATACT
34319585 TTTATAAGTATCAATAC
1 TTTATAAGTATCAATAC
34319602 CAATTTGACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (18 bp):
TTTATAAGTATCAATACT
Found at i:34321599 original size:48 final size:48
Alignment explanation
Indices: 34321528--34321651 Score: 185
Period size: 48 Copynumber: 2.6 Consensus size: 48
34321518 TGAGATCCCA
** *
34321528 TGTAAGACCATGAGTGGGACATGGCATCGGCGTTGATATGTGTACCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTACCAG
* * *
34321576 TGTAAGACCATGTTTGGGACATGGCATCGGCGATGATATGTGTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTACCAG
*
34321624 CGTAAGACCATGTCTGGGACATGGCATC
1 TGTAAGACCATGTCTGGGACATGGCATC
34321652 AGCACCGATA
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTACCAG
Found at i:34325253 original size:47 final size:47
Alignment explanation
Indices: 34325139--34325441 Score: 486
Period size: 47 Copynumber: 6.4 Consensus size: 47
34325129 TATCACAGTT
* * * *
34325139 ATACACTTCCAC-TTCCATCCCATTGACCATTCGGCCTTAT--CATAT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATAC
*
34325184 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
34325231 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
34325278 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
34325327 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
*
34325374 GTACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
34325423 ATACACTTTCACATTCATC
1 ATACACTTTCACATTCATC
34325442 GTAACAAAAT
Statistics
Matches: 243, Mismatches: 8, Indels: 10
0.93 0.03 0.04
Matches are distributed among these distances:
45 33 0.14
46 2 0.01
47 139 0.57
49 69 0.28
ACGTcount: A:0.27, C:0.32, G:0.08, T:0.33
Consensus pattern (47 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
Found at i:34325364 original size:96 final size:96
Alignment explanation
Indices: 34325139--34325441 Score: 508
Period size: 96 Copynumber: 3.2 Consensus size: 96
34325129 TATCACAGTT
* * * * *
34325139 ATACACTTCCAC-TTCCATCCCATTGACCATTCGGCCTTAT--CATATATATACTTTCACATTCA
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCA
34325201 TCACATTGGCCATTCGGCCTTATCAC--ATAC
65 TCACATTGGCCATTCGGCCTTATCACATATAC
34325231 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCAT
34325296 CACATTGGCCATTCGGCCTTATCACATATAC
66 CACATTGGCCATTCGGCCTTATCACATATAC
*
34325327 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACGTACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCAT
34325392 CACATTGGCCATTCGGCCTTATCACATATAC
66 CACATTGGCCATTCGGCCTTATCACATATAC
34325423 ATACACTTTCACATTCATC
1 ATACACTTTCACATTCATC
34325442 GTAACAAAAT
Statistics
Matches: 200, Mismatches: 6, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
92 34 0.17
93 2 0.01
94 46 0.23
96 118 0.59
ACGTcount: A:0.27, C:0.32, G:0.08, T:0.33
Consensus pattern (96 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCAT
CACATTGGCCATTCGGCCTTATCACATATAC
Found at i:34325368 original size:22 final size:22
Alignment explanation
Indices: 34325343--34325418 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
34325333 TTTCACATTC
34325343 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * * * *
34325365 ATCACATACGTACACTTTC-ACATT
1 ATCACAT-TG-GC-CATTCGGCCTT
34325389 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
34325412 ATCACAT
1 ATCACAT
34325419 ATACATACAC
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.25, C:0.32, G:0.12, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:34325381 original size:143 final size:140
Alignment explanation
Indices: 34325139--34325441 Score: 493
Period size: 143 Copynumber: 2.1 Consensus size: 140
34325129 TATCACAGTT
* * *
34325139 ATACACTTCCAC-TTCCATCCCATTGACCATTCGGCCTTATCATATATATACTTTCACATTCATC
1 ATACACTTTCACATT-CATCACATTGACCATTCGGCCTTATCATATATACACTTTCACATTCATC
34325203 ACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCCT
65 ACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCCT
34325268 TATCAC-ATAC
130 TATCACAATAC
*
34325278 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGACCATTCGGCCTTAT--CATAT--ATACACTTTCACATTC
*
34325343 ATCACATTGGCCATTCGGCCTTATCACATACGTACACTTTCACATTCATCACATTGGCCATTCGG
62 ATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGG
34325408 CCTTATCACATATAC
127 CCTTATCACA-ATAC
34325423 ATACACTTTCACATTCATC
1 ATACACTTTCACATTCATC
34325442 GTAACAAAAT
Statistics
Matches: 152, Mismatches: 5, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
139 34 0.22
140 2 0.01
141 5 0.03
143 88 0.58
145 23 0.15
ACGTcount: A:0.27, C:0.32, G:0.08, T:0.33
Consensus pattern (140 bp):
ATACACTTTCACATTCATCACATTGACCATTCGGCCTTATCATATATACACTTTCACATTCATCA
CATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACAATAC
Found at i:34333110 original size:28 final size:28
Alignment explanation
Indices: 34333057--34333140 Score: 114
Period size: 28 Copynumber: 3.0 Consensus size: 28
34333047 CATTTTGTGC
*
34333057 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTAGTGTGTTTTGGA-GGATTATAT
*
34333086 TATTCTAGTGTGTTTGGGAGGATTATAT
1 TATTCTAGTGTGTTTTGGAGGATTATAT
* * *
34333114 GATACTTGTGTGTTTTGGAGGATTATA
1 TATTCTAGTGTGTTTTGGAGGATTATA
34333141 CTGGTGTGTT
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
28 32 0.65
29 17 0.35
ACGTcount: A:0.20, C:0.04, G:0.29, T:0.48
Consensus pattern (28 bp):
TATTCTAGTGTGTTTTGGAGGATTATAT
Found at i:34333383 original size:23 final size:23
Alignment explanation
Indices: 34333345--34333430 Score: 85
Period size: 23 Copynumber: 4.0 Consensus size: 23
34333335 GCTATACTGA
*
34333345 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTTATGTGTCGTATT
* *
34333368 TTAGGCACCTTGTGTGTCGTA--
1 TCAGGCACCTTATGTGTCGTATT
*
34333389 TCAGGCACC-T-CGTGT-GTAATT
1 TCAGGCACCTTATGTGTCGT-ATT
34333410 TCAGGCA-CTTATGTGTCGTAT
1 TCAGGCACCTTATGTGTCGTAT
34333431 ATTGATCAGG
Statistics
Matches: 51, Mismatches: 6, Indels: 13
0.73 0.09 0.19
Matches are distributed among these distances:
18 2 0.04
19 5 0.10
20 2 0.04
21 16 0.31
22 6 0.12
23 20 0.39
ACGTcount: A:0.17, C:0.20, G:0.24, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTTATGTGTCGTATT
Found at i:34333394 original size:21 final size:21
Alignment explanation
Indices: 34333344--34333430 Score: 77
Period size: 21 Copynumber: 4.1 Consensus size: 21
34333334 GGCTATACTG
*
34333344 ATCAGGCACTTTATGTGTCGT
1 ATCAGGCACCTTATGTGTCGT
* *
34333365 ATTTTAGGCACCTTGTGTGTCGT
1 A--TCAGGCACCTTATGTGTCGT
** **
34333388 ATCAGGCACCTCGTGTGTAAT
1 ATCAGGCACCTTATGTGTCGT
*
34333409 TTCAGGCA-CTTATGTGTCGT
1 ATCAGGCACCTTATGTGTCGT
34333429 AT
1 AT
34333431 ATTGATCAGG
Statistics
Matches: 51, Mismatches: 13, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
20 9 0.18
21 24 0.47
23 18 0.35
ACGTcount: A:0.18, C:0.20, G:0.24, T:0.38
Consensus pattern (21 bp):
ATCAGGCACCTTATGTGTCGT
Found at i:34334669 original size:46 final size:48
Alignment explanation
Indices: 34334511--34334697 Score: 163
Period size: 46 Copynumber: 3.9 Consensus size: 48
34334501 TGGTTGGACC
34334511 ATGGCATCA-A-TGTGATATGTGA-TCTGTGTAAGACCATAGCTGGGCT
1 ATGGCATCAGAGTGTGATATGTGATTC-GTGTAAGACCATAGCTGGGCT
* * * * *
34334557 ATGGCATCAGAGATATGTGATTACGTGCTTCCGTATAAGACCATATCTGGGAT
1 ATGGCATCAGAG---TGTGA-TATGTGATT-CGTGTAAGACCATAGCTGGGCT
*
34334610 ATGGCATC--AGTGTGATATGTGATTCGTGTAAGACCATGGCTGGGCT
1 ATGGCATCAGAGTGTGATATGTGATTCGTGTAAGACCATAGCTGGGCT
* * *
34334656 ATGGC-TACGGTGTGTGATATGTGACTAT-GTGCAAGACCATAG
1 ATGGCAT-CAGAGTGTGATATGTGA-T-TCGTGTAAGACCATAG
34334698 TTTTACTATG
Statistics
Matches: 114, Mismatches: 14, Indels: 23
0.75 0.09 0.15
Matches are distributed among these distances:
45 1 0.01
46 33 0.29
47 8 0.07
48 18 0.16
49 13 0.11
50 1 0.01
51 7 0.06
52 5 0.04
53 27 0.24
54 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.30
Consensus pattern (48 bp):
ATGGCATCAGAGTGTGATATGTGATTCGTGTAAGACCATAGCTGGGCT
Found at i:34343062 original size:48 final size:48
Alignment explanation
Indices: 34342937--34343062 Score: 189
Period size: 48 Copynumber: 2.6 Consensus size: 48
34342927 TGAGATCCCA
* * *
34342937 TGTAAGACCATGTCTGGGACATGGCATCGAAGTTGATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGAGATGATATGTGCGCCAG
* * *
34342985 TGTAAGACCATGTCTGGGACTTGGCATCGGTGATGATATGTGCGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGAGATGATATGTGCGCCAG
*
34343033 TGTAAGACCATGTTTGGGACATGGCATCGG
1 TGTAAGACCATGTCTGGGACATGGCATCGG
34343063 CACCGATATG
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 70 1.00
ACGTcount: A:0.23, C:0.17, G:0.33, T:0.28
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGAGATGATATGTGCGCCAG
Found at i:34347028 original size:16 final size:17
Alignment explanation
Indices: 34347003--34347047 Score: 58
Period size: 16 Copynumber: 2.7 Consensus size: 17
34346993 AAAAGAAAGT
*
34347003 GAAAATGAAAAAT-AAA
1 GAAAAAGAAAAATGAAA
34347019 GAAAAAG-AAAATGAAA
1 GAAAAAGAAAAATGAAA
34347035 GAGAAAAGAAAAA
1 GA-AAAAGAAAAA
34347048 GAGTTGTGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 5 0.20
16 11 0.44
17 5 0.20
18 4 0.16
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.07
Consensus pattern (17 bp):
GAAAAAGAAAAATGAAA
Found at i:34347046 original size:22 final size:20
Alignment explanation
Indices: 34346992--34347046 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 20
34346982 ATGAGAGTGG
*
34346992 AAAAAGAAAGTGAAAATGAAA
1 AAAAAGAAA-AGAAAATGAAA
34347013 AATAAAGAAAAAGAAAATGAAA
1 AA-AAAG-AAAAGAAAATGAAA
34347035 GAGAAAAGAAAA
1 -A-AAAAGAAAA
34347047 AGAGTTGTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
21 2 0.07
22 18 0.62
23 8 0.28
24 1 0.03
ACGTcount: A:0.75, C:0.00, G:0.18, T:0.07
Consensus pattern (20 bp):
AAAAAGAAAAGAAAATGAAA
Found at i:34348158 original size:10 final size:10
Alignment explanation
Indices: 34348143--34348187 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
34348133 AACTCACTTG
34348143 AGCTCGTTTC
1 AGCTCGTTTC
*
34348153 AGCTCGTTTG
1 AGCTCGTTTC
* *
34348163 AGCTTGATTTT
1 AGCTCG-TTTC
34348174 AGCTCGTTTC
1 AGCTCGTTTC
34348184 AGCT
1 AGCT
34348188 TATTCCTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
10 21 0.72
11 8 0.28
ACGTcount: A:0.13, C:0.22, G:0.22, T:0.42
Consensus pattern (10 bp):
AGCTCGTTTC
Found at i:34348179 original size:21 final size:20
Alignment explanation
Indices: 34348140--34348188 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
34348130 ATCAACTCAC
*
34348140 TTGAGCTCGTTTCAGCTCGT
1 TTGAGCTTGTTTCAGCTCGT
*
34348160 TTGAGCTTGATTTTAGCTCGT
1 TTGAGCTTG-TTTCAGCTCGT
*
34348181 TTCAGCTT
1 TTGAGCTT
34348189 ATTCCTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.12, C:0.20, G:0.22, T:0.45
Consensus pattern (20 bp):
TTGAGCTTGTTTCAGCTCGT
Found at i:34356085 original size:94 final size:94
Alignment explanation
Indices: 34355927--34356099 Score: 231
Period size: 94 Copynumber: 1.8 Consensus size: 94
34355917 GCCACATCAT
** * *
34355927 GAGAGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATATTTAAACCAGTGTAAGAC
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATATACAAACAAGTGCAAGAC
*
34355992 ATGTTTGGGACATGCATCGGCATTGAGAC
66 ATGTTTAGGACATGCATCGGCATTGAGAC
* * ** *
34356021 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCT-GCCTTGCTATATACAAGCAAGTGCAAGA
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCAT-TGGCCTCGAGATATACAAACAAGTGCAAGA
*
34356085 CCTGTTTAGGACATG
65 CATGTTTAGGACATG
34356100 GCGTCAGCTT
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
94 66 0.99
95 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (94 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGATATACAAACAAGTGCAAGAC
ATGTTTAGGACATGCATCGGCATTGAGAC
Found at i:34356177 original size:49 final size:48
Alignment explanation
Indices: 34355888--34356243 Score: 181
Period size: 46 Copynumber: 7.5 Consensus size: 48
34355878 TATGTGTGCT
* * *
34355888 AGTGTAAGACATGTCTGGGACAT-GCATC-AGCCA-C-ATCATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CCATCTA-GATGAAAGCC
* * * * *
34355934 AGTGTAAGACATGTCTGGGACAT-GCATTGGCC-TCGAGAT-ATTTAAACC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCATCTAGATGA---AAGCC
* * * * * *
34355982 AGTGTAAGACATGTTTGGGACAT-GCATCG-GCAT-TGAGACGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCATCT-AGATGAAAGCC
* * * *
34356028 AGTGTAAGACATGTCTGGGACAT-GCATCTG-CCTTGCTATAT-ACAAGCA
1 AGTGTAAGACCTGTCTGGGACATGGCATC-GACCAT-CTAGATGA-AAGCC
* * * * * * * * * *
34356076 AGTGCAAGACCTGTTTAGGACATGGCGTC-AGCTTGT-TATG--TGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCATCTAGATGAAAGCC
*
34356120 AGTGTAAGACCTGTCTGGGACATGGCATCGACACCAT-TAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCG--ACCATCTAGATGAAAGCC
* * *
34356169 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTTGCTATATGAAAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCAT-CTAGATGAAAGCC
34356218 AGTGTAAGACCATGTCTGGGACATGG
1 AGTGTAAGACC-TGTCTGGGACATGG
34356244 TGTTGGCATC
Statistics
Matches: 242, Mismatches: 43, Indels: 46
0.73 0.13 0.14
Matches are distributed among these distances:
44 26 0.11
45 1 0.00
46 65 0.27
47 16 0.07
48 61 0.25
49 59 0.24
50 14 0.06
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCATCTAGATGAAAGCC
Found at i:34356210 original size:142 final size:139
Alignment explanation
Indices: 34355981--34356243 Score: 352
Period size: 142 Copynumber: 1.9 Consensus size: 139
34355971 ATATTTAAAC
* * *
34355981 CAGTGTAAGACATGTTTGGGACATGCATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTCTGG
1 CAGTGTAAGACATGTCTGGGACATGCATCGCCATTGAGACGAGAGCCAGTGTAAGACATGTCTGG
* *
34356046 GACATGCATCTGCCTTGCTATAT-ACAAGCAAGTGCAAGACC-TGTTTAGGACATGGCGTCAGCT
66 GACATGCATCGGCCTTGCTATATGA-AAGCAAGTGCAAGACCATGTCTAGGACATGGCGTCAGCT
34356109 TGTTATGTGT
130 TGTTATGTGT
* * *
34356119 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCATT-AGATGAGAGCCAGTGTAAGACCTGT
1 CAGTGTAAGACATGTCTGGGACAT-GCATCG---CCATTGAGACGAGAGCCAGTGTAAGACATGT
* * *
34356183 CTGGGACATGGCATCGGCCTTGCTATATGAAAGCCAGTGTAAGACCATGTCTGGGACATGG
62 CTGGGACAT-GCATCGGCCTTGCTATATGAAAGCAAGTGCAAGACCATGTCTAGGACATGG
34356244 TGTTGGCATC
Statistics
Matches: 107, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
138 22 0.21
139 6 0.06
141 31 0.29
142 35 0.33
143 13 0.12
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (139 bp):
CAGTGTAAGACATGTCTGGGACATGCATCGCCATTGAGACGAGAGCCAGTGTAAGACATGTCTGG
GACATGCATCGGCCTTGCTATATGAAAGCAAGTGCAAGACCATGTCTAGGACATGGCGTCAGCTT
GTTATGTGT
Found at i:34365337 original size:42 final size:44
Alignment explanation
Indices: 34365247--34365369 Score: 130
Period size: 43 Copynumber: 2.9 Consensus size: 44
34365237 GGGATGTTGG
34365247 CATCGACT-TATGATTTACATGTAAGACCATGTCTGGGAAATCGA
1 CATCGA-TATATGATTTACATGTAAGACCATGTCTGGGAAATCGA
* * * * *
34365291 CATCG-TATATGATTT-CGTGTAAGACCCTGTTTGGGGCAAT-GG
1 CATCGATATATGATTTACATGTAAGACCATGTCT-GGGAAATCGA
* *
34365333 CATCGATATTTG-TTTACATGTAAGACCACGTCTGGGA
1 CATCGATATATGATTTACATGTAAGACCATGTCTGGGA
34365370 CGTTGGCTTT
Statistics
Matches: 64, Mismatches: 11, Indels: 10
0.75 0.13 0.12
Matches are distributed among these distances:
42 27 0.42
43 32 0.50
44 5 0.08
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (44 bp):
CATCGATATATGATTTACATGTAAGACCATGTCTGGGAAATCGA
Found at i:34374875 original size:14 final size:14
Alignment explanation
Indices: 34374856--34374900 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
34374846 AACTCATCTT
*
34374856 AGTTTAATTAAATG
1 AGTTTAATTTAATG
*
34374870 AGTTT-ATTTGATG
1 AGTTTAATTTAATG
*
34374883 AATTTAATTTAATG
1 AGTTTAATTTAATG
34374897 AGTT
1 AGTT
34374901 GCTTCTTTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.49
Consensus pattern (14 bp):
AGTTTAATTTAATG
Found at i:34375910 original size:29 final size:29
Alignment explanation
Indices: 34375877--34375934 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
34375867 ATAACCAAAC
*
34375877 CTACAAAAACTTTATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
*
34375906 CTACATAAACTTCATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
34375935 ATTTGAATCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.43, C:0.29, G:0.00, T:0.28
Consensus pattern (29 bp):
CTACAAAAACTTCATATCCATAAACCCAT
Found at i:34375929 original size:15 final size:15
Alignment explanation
Indices: 34375883--34375930 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
34375873 AAACCTACAA
*
34375883 AAACTTTATATCCAT
1 AAACTTCATATCCAT
* * *
34375898 AAAC-CCATCTACAT
1 AAACTTCATATCCAT
34375912 AAACTTCATATCCAT
1 AAACTTCATATCCAT
34375927 AAAC
1 AAAC
34375931 CCATATTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (15 bp):
AAACTTCATATCCAT
Done.