Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 11 of 333
Found at i:2904896 original size:16 final size:16
Alignment explanation
Indices: 2904874--2904942 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
2904864 TTTGGTTCGC
2904874 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
2904890 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
2904906 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
2904923 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
2904939 TGTA
1 TGTA
2904943 ATAGCTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:2904920 original size:33 final size:32
Alignment explanation
Indices: 2904874--2904942 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
2904864 TTTGGTTCGC
2904874 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
*
2904906 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGCGTATTGGATTAGAGG
2904939 TGTA
1 TGTA
2904943 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 6 0.17
33 29 0.83
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTAGAGG
Found at i:2905007 original size:44 final size:45
Alignment explanation
Indices: 2904923--2905013 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
2904913 GGATTAGAGG
* * *
2904923 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
2904968 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
2905012 TG
1 TG
2905014 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:2905199 original size:18 final size:17
Alignment explanation
Indices: 2905178--2905212 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
2905168 TTATTATTAA
*
2905178 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
2905196 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
2905213 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:2905374 original size:120 final size:120
Alignment explanation
Indices: 2905161--2905423 Score: 517
Period size: 120 Copynumber: 2.2 Consensus size: 120
2905151 ATCATATTTA
2905161 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
2905226 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
2905281 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
2905346 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
2905401 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
2905424 AACTTGAAAA
Statistics
Matches: 142, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 142 1.00
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:2910003 original size:42 final size:40
Alignment explanation
Indices: 2909951--2910053 Score: 104
Period size: 42 Copynumber: 2.5 Consensus size: 40
2909941 AATAAATTAA
2909951 ATTATAAAAATAATTATTTTTATTTATCAC-ATATGA-CATTTT
1 ATTAT-AAAATAATTATTTTTA---ATCACTATATGATCATTTT
* *
2909993 ATATTTAAAAT-ATTATATTTTAATCACTTATATTATCATTTT
1 AT-TATAAAATAATTAT-TTTTAATCAC-TATATGATCATTTT
2910035 ATTATAAAATAATTATTTT
1 ATTATAAAATAATTATTTT
2910054 ACTGTTAAAC
Statistics
Matches: 52, Mismatches: 3, Indels: 13
0.76 0.04 0.19
Matches are distributed among these distances:
39 5 0.10
41 20 0.38
42 25 0.48
43 2 0.04
ACGTcount: A:0.41, C:0.06, G:0.01, T:0.52
Consensus pattern (40 bp):
ATTATAAAATAATTATTTTTAATCACTATATGATCATTTT
Found at i:2915298 original size:16 final size:16
Alignment explanation
Indices: 2915277--2915310 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
2915267 TCGATATATT
2915277 TTATATTTTATTAGAA
1 TTATATTTTATTAGAA
*
2915293 TTATATTTTATTATAA
1 TTATATTTTATTAGAA
2915309 TT
1 TT
2915311 TTTATAAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
TTATATTTTATTAGAA
Found at i:2917455 original size:24 final size:22
Alignment explanation
Indices: 2917412--2917455 Score: 52
Period size: 24 Copynumber: 1.9 Consensus size: 22
2917402 ATACAAAGAT
* *
2917412 ATTTATAAATGGTATTTAAATA
1 ATTTATAAATGATATATAAATA
2917434 ATTTAATATAATGATATATAAA
1 ATTT-ATA-AATGATATATAAA
2917456 ATATTAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 4 0.22
23 3 0.17
24 11 0.61
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (22 bp):
ATTTATAAATGATATATAAATA
Found at i:2926459 original size:12 final size:12
Alignment explanation
Indices: 2926442--2926476 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
2926432 TTCTTTCAGC
2926442 TGTTTTTTTTTT
1 TGTTTTTTTTTT
*
2926454 TGTTTTTTTGTT
1 TGTTTTTTTTTT
2926466 TGTTTGTTTTT
1 TGTTT-TTTTT
2926477 ACTATTTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 16 0.80
13 4 0.20
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (12 bp):
TGTTTTTTTTTT
Found at i:2926461 original size:8 final size:8
Alignment explanation
Indices: 2926444--2926476 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
2926434 CTTTCAGCTG
2926444 TTTT-TTT
1 TTTTGTTT
2926451 TTTTGTTT
1 TTTTGTTT
2926459 TTTTGTTT
1 TTTTGTTT
*
2926467 GTTTGTTT
1 TTTTGTTT
2926475 TT
1 TT
2926477 ACTATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
7 4 0.17
8 19 0.83
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (8 bp):
TTTTGTTT
Found at i:2932672 original size:133 final size:133
Alignment explanation
Indices: 2932434--2932701 Score: 473
Period size: 133 Copynumber: 2.0 Consensus size: 133
2932424 ATGCACAATG
* *
2932434 TGCTCATAAAAGAAGAGACATTCTTGCCCTAGTATGCAAACCCAAACCAAAAGAAAAACATTTAA
1 TGCTCATAAAAGAAGAGACATTCTTGCCCCAGTATGCAAACCCAAACCAAAAGAAAAACAATTAA
* * *
2932499 CACAAATAATTTACAATCACTTTCAAGCTCTGGGGAATCCATAACTACCATTCCTGAGATATTTA
66 CACAAATAATTTACAATCACTTTCAAACTCTGGGGAATCCAGAACTACCATTCCTGAAATATTTA
2932564 GGC
131 GGC
* *
2932567 TGCTCGTAAAAGAAGAGACATTCTTGCCCCAGTATGCAAATCCAAACCAAAAGAAAAACAATTAA
1 TGCTCATAAAAGAAGAGACATTCTTGCCCCAGTATGCAAACCCAAACCAAAAGAAAAACAATTAA
2932632 CACAAATAATTTACAATCACTTTCAAACTCTGGGGAATCCAGAACTACCATTCCTGAAATATTTA
66 CACAAATAATTTACAATCACTTTCAAACTCTGGGGAATCCAGAACTACCATTCCTGAAATATTTA
2932697 GGC
131 GGC
2932700 TG
1 TG
2932702 AGATATGCAG
Statistics
Matches: 128, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
133 128 1.00
ACGTcount: A:0.40, C:0.22, G:0.13, T:0.24
Consensus pattern (133 bp):
TGCTCATAAAAGAAGAGACATTCTTGCCCCAGTATGCAAACCCAAACCAAAAGAAAAACAATTAA
CACAAATAATTTACAATCACTTTCAAACTCTGGGGAATCCAGAACTACCATTCCTGAAATATTTA
GGC
Found at i:2938136 original size:29 final size:29
Alignment explanation
Indices: 2938087--2938142 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
2938077 ATTCAAGACT
* **
2938087 AGAGTTTGAGGGGAGTTTTTTGGGAGAAA
1 AGAGTTTGAGGAGAGAGTTTTGGGAGAAA
*
2938116 AGAGTTTGAGGAGAGAGTTTTTGGAGA
1 AGAGTTTGAGGAGAGAGTTTTGGGAGA
2938143 GGCTAAGTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.29, C:0.00, G:0.41, T:0.30
Consensus pattern (29 bp):
AGAGTTTGAGGAGAGAGTTTTGGGAGAAA
Found at i:2938477 original size:6 final size:6
Alignment explanation
Indices: 2938468--2938494 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
2938458 ATTATTACTA
2938468 TTAATT TTAATT TTAATT TTAATT TTA
1 TTAATT TTAATT TTAATT TTAATT TTA
2938495 TCTTTTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
TTAATT
Found at i:2938602 original size:19 final size:19
Alignment explanation
Indices: 2938579--2938641 Score: 69
Period size: 19 Copynumber: 3.4 Consensus size: 19
2938569 TTATATATTT
2938579 TTATTATTGTTATTAACATA
1 TTATTATT-TTATTAACATA
2938599 -TATTA--TTATTAACATA
1 TTATTATTTTATTAACATA
* **
2938615 TTATTTTTTTATTAATGTA
1 TTATTATTTTATTAACATA
2938634 TTATTATT
1 TTATTATT
2938642 ATTTGCATTA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
16 11 0.31
17 4 0.11
19 21 0.58
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.60
Consensus pattern (19 bp):
TTATTATTTTATTAACATA
Found at i:2938607 original size:16 final size:16
Alignment explanation
Indices: 2938583--2938615 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
2938573 ATATTTTTAT
*
2938583 TATTGTTATTAACATA
1 TATTATTATTAACATA
2938599 TATTATTATTAACATA
1 TATTATTATTAACATA
2938615 T
1 T
2938616 TATTTTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (16 bp):
TATTATTATTAACATA
Found at i:2939741 original size:16 final size:17
Alignment explanation
Indices: 2939692--2939755 Score: 76
Period size: 16 Copynumber: 3.8 Consensus size: 17
2939682 TAATAATGCA
**
2939692 AATAATAATAATACATT
1 AATAATAATAATATGTT
*
2939709 AATAAAAAATAATATGTT
1 AAT-AATAATAATATGTT
2939727 AATAATAAT-ATATGTT
1 AATAATAATAATATGTT
*
2939743 AATAACAATAATA
1 AATAATAATAATA
2939756 AAAATATATA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
16 15 0.38
17 11 0.28
18 14 0.35
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.34
Consensus pattern (17 bp):
AATAATAATAATATGTT
Found at i:2940324 original size:30 final size:30
Alignment explanation
Indices: 2940290--2940371 Score: 128
Period size: 30 Copynumber: 2.7 Consensus size: 30
2940280 GATGGTGCAA
* * * *
2940290 GTGCAAGTGAGAGGCGATGTGGTGGAGTAG
1 GTGCAAGTGGGAGGCAAGGTGGTAGAGTAG
2940320 GTGCAAGTGGGAGGCAAGGTGGTAGAGTAG
1 GTGCAAGTGGGAGGCAAGGTGGTAGAGTAG
2940350 GTGCAAGTGGGAGGCAAGGTGG
1 GTGCAAGTGGGAGGCAAGGTGG
2940372 CTAGGGTTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.24, C:0.07, G:0.51, T:0.17
Consensus pattern (30 bp):
GTGCAAGTGGGAGGCAAGGTGGTAGAGTAG
Found at i:2945771 original size:23 final size:24
Alignment explanation
Indices: 2945745--2945791 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
2945735 CAACCAAACC
2945745 AATTCA-ACATATTT-TCAAGATAA
1 AATTCATACATATTTAT-AAGATAA
*
2945768 AATTCATGCATATTTATAAGATAA
1 AATTCATACATATTTATAAGATAA
2945792 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 6 0.29
24 14 0.67
25 1 0.05
ACGTcount: A:0.47, C:0.11, G:0.06, T:0.36
Consensus pattern (24 bp):
AATTCATACATATTTATAAGATAA
Found at i:2947633 original size:120 final size:121
Alignment explanation
Indices: 2947420--2947664 Score: 384
Period size: 120 Copynumber: 2.0 Consensus size: 121
2947410 TTATTCTATG
* * *
2947420 AGAAACTAGACTCAATAATATTTAATTGCATATTTTTTTCATCTTCTAATTCGATTCCTACAATT
1 AGAAACTAGACCCAATAATATTTAATTACATATTTTGTTCATCTTCTAATTCGATTCCTACAATT
* *
2947485 TATGATGATTTTTCAAAGTTAGTCTA-CTGCTACTGTCCAATATTGTTTTAGTGCA
66 TATGATGACTTTTCAAAGTTAGTCTACCTGCTACTGTCAAATATTGTTTTAGTGCA
* *
2947540 AGAAACTAGACCCAATAATCTTTAATTACATATTTTGTTCATCTTGTAATTCGATTCCTACAATT
1 AGAAACTAGACCCAATAATATTTAATTACATATTTTGTTCATCTTCTAATTCGATTCCTACAATT
* *
2947605 TATGGTGACTTTTCAAAGTTAGTCTACTGCTGCTGCTGTCAAATATTGTTTTAGTGCA
66 TATGATGACTTTTCAAAGTTAGTCTAC--CTGCTACTGTCAAATATTGTTTTAGTGCA
2947663 AG
1 AG
2947665 CTATTTATTA
Statistics
Matches: 113, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
120 84 0.74
123 29 0.26
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (121 bp):
AGAAACTAGACCCAATAATATTTAATTACATATTTTGTTCATCTTCTAATTCGATTCCTACAATT
TATGATGACTTTTCAAAGTTAGTCTACCTGCTACTGTCAAATATTGTTTTAGTGCA
Found at i:2954912 original size:889 final size:889
Alignment explanation
Indices: 2953194--2954977 Score: 3541
Period size: 889 Copynumber: 2.0 Consensus size: 889
2953184 GGTAATGCTG
2953194 ATTTTGTTTTTTCTTGTTTAATAAGACTAGTAGCCAACAGTTAACCTTTCTGTTCTTATACTTAC
1 ATTTTGTTTTTTCTTGTTTAATAAGACTAGTAGCCAACAGTTAACCTTTCTGTTCTTATACTTAC
2953259 ACATCTAATGGTTGCCTCTTGCATTTCAGGCACTTTATGTGATGAATCCTAATAAGTTCAGGGCA
66 ACATCTAATGGTTGCCTCTTGCATTTCAGGCACTTTATGTGATGAATCCTAATAAGTTCAGGGCA
2953324 TGTGAGTTTCTCATACGGTTCCATGAACGAGAGCGTGGTGATAAGATAATTGTCTTTGCTGACAA
131 TGTGAGTTTCTCATACGGTTCCATGAACGAGAGCGTGGTGATAAGATAATTGTCTTTGCTGACAA
2953389 TCTTTTTGCACTGGTTGAGTATGCAATGAAGCTACGCAAGCCTATGATCTATGGTGCTACCAGGT
196 TCTTTTTGCACTGGTTGAGTATGCAATGAAGCTACGCAAGCCTATGATCTATGGTGCTACCAGGT
2953454 TATTTGTGAACATCAATTGCTCTGTCCTTTTTGTATTGTTTTTATATTGTTGTGTCAATCTTCCC
261 TATTTGTGAACATCAATTGCTCTGTCCTTTTTGTATTGTTTTTATATTGTTGTGTCAATCTTCCC
2953519 TTGTAATGTGCAGCCATCTTGAGAGGACTAAAATTCTCCAGGCATTCAAGACTAGTCGTGATGTG
326 TTGTAATGTGCAGCCATCTTGAGAGGACTAAAATTCTCCAGGCATTCAAGACTAGTCGTGATGTG
2953584 AACACTATTTTCCTCTCAAAGGTATTCATCAGCAGATTATGTTTTACTCAGTATTGTCAGTGATT
391 AACACTATTTTCCTCTCAAAGGTATTCATCAGCAGATTATGTTTTACTCAGTATTGTCAGTGATT
2953649 GTAGAGAAATGCTGCAAAATTTTGATTATGAGCTACTATCGCACCCCCATCAAAAAGCCAAGTTT
456 GTAGAGAAATGCTGCAAAATTTTGATTATGAGCTACTATCGCACCCCCATCAAAAAGCCAAGTTT
2953714 TACTTTTATTCTCCCCTCTTTTGGTCCCTATAATGTGTTGGGTTTTGGGAGGAGGGGGTGGCGGC
521 TACTTTTATTCTCCCCTCTTTTGGTCCCTATAATGTGTTGGGTTTTGGGAGGAGGGGGTGGCGGC
*
2953779 AGTGTCTAGAAATGATTCAGATTAACTGCAATATATTCTTAAATGCATTTGGCCTTAATTATCTA
586 AGTGTCTAGAAATGATTCAAATTAACTGCAATATATTCTTAAATGCATTTGGCCTTAATTATCTA
2953844 TTATAGTTAACATCATCTAATCTGTTTTAAGATGATGAGACTGCTAGTTTTGTTCCCAAGTGGAT
651 TTATAGTTAACATCATCTAATCTGTTTTAAGATGATGAGACTGCTAGTTTTGTTCCCAAGTGGAT
2953909 TCTTTTCATGAAAATGGTTTGGTGTTTCTGTTTCTCTCTACAGGTTGGTGATAATTCGATAGATA
716 TCTTTTCATGAAAATGGTTTGGTGTTTCTGTTTCTCTCTACAGGTTGGTGATAATTCGATAGATA
2953974 TTCCTGAGGCAAATGTGATCATTCAGATTTCATCACATGCTGGTTCAAGACGTCAAGAAGCCCAG
781 TTCCTGAGGCAAATGTGATCATTCAGATTTCATCACATGCTGGTTCAAGACGTCAAGAAGCCCAG
2954039 CGTTTGGGACGTATTCTTAGGGCAAAGGTTTGTGTTACAGTTTT
846 CGTTTGGGACGTATTCTTAGGGCAAAGGTTTGTGTTACAGTTTT
2954083 ATTTTGTTTTTTCTTGTTTAATAAGACTAGTAGCCAACAGTTAACCTTTCTGTTCTTATACTTAC
1 ATTTTGTTTTTTCTTGTTTAATAAGACTAGTAGCCAACAGTTAACCTTTCTGTTCTTATACTTAC
2954148 ACATCTAATGGTTGCCTCTTGCATTTCAGGCACTTTATGTGATGAATCCTAATAAGTTCAGGGCA
66 ACATCTAATGGTTGCCTCTTGCATTTCAGGCACTTTATGTGATGAATCCTAATAAGTTCAGGGCA
2954213 TGTGAGTTTCTCATACGGTTCCATGAACGAGAGCGTGGTGATAAGATAATTGTCTTTGCTGACAA
131 TGTGAGTTTCTCATACGGTTCCATGAACGAGAGCGTGGTGATAAGATAATTGTCTTTGCTGACAA
2954278 TCTTTTTGCACTGGTTGAGTATGCAATGAAGCTACGCAAGCCTATGATCTATGGTGCTACCAGGT
196 TCTTTTTGCACTGGTTGAGTATGCAATGAAGCTACGCAAGCCTATGATCTATGGTGCTACCAGGT
2954343 TATTTGTGAACATCAATTGCTCTGTCCTTTTTGTATTGTTTTTATATTGTTGTGTCAATCTTCCC
261 TATTTGTGAACATCAATTGCTCTGTCCTTTTTGTATTGTTTTTATATTGTTGTGTCAATCTTCCC
2954408 TTGTAATGTGCAGCCATCTTGAGAGGACTAAAATTCTCCAGGCATTCAAGACTAGTCGTGATGTG
326 TTGTAATGTGCAGCCATCTTGAGAGGACTAAAATTCTCCAGGCATTCAAGACTAGTCGTGATGTG
2954473 AACACTATTTTCCTCTCAAAGGTATTCATCAGCAGATTATGTTTTACTCAGTATTGTCAGTGATT
391 AACACTATTTTCCTCTCAAAGGTATTCATCAGCAGATTATGTTTTACTCAGTATTGTCAGTGATT
2954538 GTAGAGAAATGCTGCAAAATTTTGATTATGAGCTACTATCGCACCCCCATCAAAAAGCCAAGTTT
456 GTAGAGAAATGCTGCAAAATTTTGATTATGAGCTACTATCGCACCCCCATCAAAAAGCCAAGTTT
*
2954603 TACTTTTATTCTCTCCTCTTTTGGTCCCTATAATGTGTTGGGTTTTGGGAGGAGGGGGTGGCGGC
521 TACTTTTATTCTCCCCTCTTTTGGTCCCTATAATGTGTTGGGTTTTGGGAGGAGGGGGTGGCGGC
*
2954668 GGTGTCTAGAAATGATTCAAATTAACTGCAATATATTCTTAAATGCATTTGGCCTTAATTATCTA
586 AGTGTCTAGAAATGATTCAAATTAACTGCAATATATTCTTAAATGCATTTGGCCTTAATTATCTA
2954733 TTATAGTTAACATCATCTAATCTGTTTTAAGATGATGAGACTGCTAGTTTTGTTCCCAAGTGGAT
651 TTATAGTTAACATCATCTAATCTGTTTTAAGATGATGAGACTGCTAGTTTTGTTCCCAAGTGGAT
2954798 TCTTTTCATGAAAATGGTTTGGTGTTTCTGTTTCTCTCTACAGGTTGGTGATAATTCGATAGATA
716 TCTTTTCATGAAAATGGTTTGGTGTTTCTGTTTCTCTCTACAGGTTGGTGATAATTCGATAGATA
2954863 TTCCTGAGGCAAATGTGATCATTCAGATTTCATCACATGCTGGTTCAAGACGTCAAGAAGCCCAG
781 TTCCTGAGGCAAATGTGATCATTCAGATTTCATCACATGCTGGTTCAAGACGTCAAGAAGCCCAG
2954928 CGTTTGGGACGTATTCTTAGGGCAAAGGTTTGTGTTACAGTTTT
846 CGTTTGGGACGTATTCTTAGGGCAAAGGTTTGTGTTACAGTTTT
2954972 ATTTTG
1 ATTTTG
2954978 CATCTGACAA
Statistics
Matches: 892, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
889 892 1.00
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.37
Consensus pattern (889 bp):
ATTTTGTTTTTTCTTGTTTAATAAGACTAGTAGCCAACAGTTAACCTTTCTGTTCTTATACTTAC
ACATCTAATGGTTGCCTCTTGCATTTCAGGCACTTTATGTGATGAATCCTAATAAGTTCAGGGCA
TGTGAGTTTCTCATACGGTTCCATGAACGAGAGCGTGGTGATAAGATAATTGTCTTTGCTGACAA
TCTTTTTGCACTGGTTGAGTATGCAATGAAGCTACGCAAGCCTATGATCTATGGTGCTACCAGGT
TATTTGTGAACATCAATTGCTCTGTCCTTTTTGTATTGTTTTTATATTGTTGTGTCAATCTTCCC
TTGTAATGTGCAGCCATCTTGAGAGGACTAAAATTCTCCAGGCATTCAAGACTAGTCGTGATGTG
AACACTATTTTCCTCTCAAAGGTATTCATCAGCAGATTATGTTTTACTCAGTATTGTCAGTGATT
GTAGAGAAATGCTGCAAAATTTTGATTATGAGCTACTATCGCACCCCCATCAAAAAGCCAAGTTT
TACTTTTATTCTCCCCTCTTTTGGTCCCTATAATGTGTTGGGTTTTGGGAGGAGGGGGTGGCGGC
AGTGTCTAGAAATGATTCAAATTAACTGCAATATATTCTTAAATGCATTTGGCCTTAATTATCTA
TTATAGTTAACATCATCTAATCTGTTTTAAGATGATGAGACTGCTAGTTTTGTTCCCAAGTGGAT
TCTTTTCATGAAAATGGTTTGGTGTTTCTGTTTCTCTCTACAGGTTGGTGATAATTCGATAGATA
TTCCTGAGGCAAATGTGATCATTCAGATTTCATCACATGCTGGTTCAAGACGTCAAGAAGCCCAG
CGTTTGGGACGTATTCTTAGGGCAAAGGTTTGTGTTACAGTTTT
Found at i:2961671 original size:17 final size:17
Alignment explanation
Indices: 2961649--2961698 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
2961639 AATAATAACT
2961649 AAATAATAACTAAATAG
1 AAATAATAACTAAATAG
2961666 --A-AATAA--AAAT--
1 AAATAATAACTAAATAG
2961676 AAATAATAACTAAATAG
1 AAATAATAACTAAATAG
2961693 AAATAA
1 AAATAA
2961699 ATATATATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 14
0.65 0.00 0.35
Matches are distributed among these distances:
12 5 0.19
13 5 0.19
14 5 0.19
15 5 0.19
17 6 0.23
ACGTcount: A:0.70, C:0.04, G:0.04, T:0.22
Consensus pattern (17 bp):
AAATAATAACTAAATAG
Found at i:2961680 original size:27 final size:27
Alignment explanation
Indices: 2961638--2961733 Score: 122
Period size: 27 Copynumber: 3.4 Consensus size: 27
2961628 ACAGCGATGT
*
2961638 AAATAATAACTAAATAATAACTAAATAG
1 AAATAA-AAATAAATAATAACTAAATAG
2961666 AAATAAAAATAAATAATAACTAAATAG
1 AAATAAAAATAAATAATAACTAAATAG
* *
2961693 AAATAAATATATATAATAATAA-TATATAA
1 AAATAAA-A-ATA-AATAATAACTAAATAG
2961722 AAATAAAAATAA
1 AAATAAAAATAA
2961734 TATATAAATA
Statistics
Matches: 62, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
26 1 0.02
27 30 0.48
28 8 0.13
29 15 0.24
30 8 0.13
ACGTcount: A:0.69, C:0.03, G:0.02, T:0.26
Consensus pattern (27 bp):
AAATAAAAATAAATAATAACTAAATAG
Found at i:2961718 original size:15 final size:15
Alignment explanation
Indices: 2961698--2961758 Score: 61
Period size: 16 Copynumber: 3.9 Consensus size: 15
2961688 AATAGAAATA
2961698 AATATATATAATAAT
1 AATATATATAATAAT
* *
2961713 AATATATAAAAATAAA
1 AATATAT-ATAATAAT
2961729 AATAATATATAAATAGAT
1 AAT-ATATAT-AATA-AT
2961747 AATATA-ATAATA
1 AATATATATAATA
2961759 GATAGAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
15 11 0.29
16 12 0.32
17 11 0.29
18 4 0.11
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (15 bp):
AATATATATAATAAT
Found at i:2961736 original size:34 final size:35
Alignment explanation
Indices: 2961687--2961792 Score: 101
Period size: 34 Copynumber: 2.9 Consensus size: 35
2961677 AATAATAACT
*
2961687 AAATAGAAATAAATATATATAATA-ATAATATATAA
1 AAATAAAAATAAATATATA-AATAGATAATATATAA
2961722 AAATAAAAAT-AATATATAAATAGATAATATAATAA
1 AAATAAAAATAAATATATAAATAGATAATAT-ATAA
* *
2961757 TAGATAGAATAATAAAATAAATAATATAGA-AATATA
1 -AAATA-AA-AAT-AAATATATAA-ATAGATAATATA
2961793 GATTTATAAA
Statistics
Matches: 60, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
33 4 0.07
34 15 0.25
35 13 0.22
36 4 0.07
37 2 0.03
38 3 0.05
39 1 0.02
40 13 0.22
41 5 0.08
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (35 bp):
AAATAAAAATAAATATATAAATAGATAATATATAA
Found at i:2961752 original size:32 final size:31
Alignment explanation
Indices: 2961660--2961790 Score: 101
Period size: 32 Copynumber: 4.2 Consensus size: 31
2961650 AATAATAACT
* *
2961660 AAATAGAAATAA-AAATAAATAATAA-CT--
1 AAATAGAAATAATATATAAATAATAATATAA
2961687 AAATAGAAATAAATATATATAATAATAATATATAA
1 AAATAGAAAT-AATATATA-AATAAT-A-ATATAA
*
2961722 AAATAAAAATAATATATAAATAGATAATATAA
1 AAATAGAAATAATATATAAATA-ATAATATAA
* * * *
2961754 TAATAGATAGAATA-ATAAAATAAATAATATAG
1 AAATAGAAATAATATAT-AAAT-AATAATATAA
2961786 AAATA
1 AAATA
2961791 TAGATTTATA
Statistics
Matches: 84, Mismatches: 9, Indels: 17
0.76 0.08 0.15
Matches are distributed among these distances:
27 10 0.12
28 2 0.02
29 4 0.05
30 6 0.07
31 3 0.04
32 33 0.39
33 7 0.08
34 10 0.12
35 9 0.11
ACGTcount: A:0.67, C:0.01, G:0.05, T:0.27
Consensus pattern (31 bp):
AAATAGAAATAATATATAAATAATAATATAA
Found at i:2961759 original size:15 final size:14
Alignment explanation
Indices: 2961639--2961786 Score: 73
Period size: 15 Copynumber: 10.6 Consensus size: 14
2961629 CAGCGATGTA
2961639 AATAATA-ACTAAAT
1 AATAATAGA-TAAAT
* *
2961653 AATAACTAAATAGA-
1 AATAA-TAGATAAAT
*
2961667 AATAA-AAATAAAT
1 AATAATAGATAAAT
* *
2961680 AATAACTAAATAGA-
1 AATAA-TAGATAAAT
*
2961694 AATAAATATATATAAT
1 AAT-AATAGATA-AAT
*
2961710 AATAATATATAAA-
1 AATAATAGATAAAT
*
2961723 AATAA-AAAT-AAT
1 AATAATAGATAAAT
2961735 ATATAAATAGATAATAT
1 A-AT-AATAGATAA-AT
2961752 AATAATAGATAGAAT
1 AATAATAGATA-AAT
2961767 AATAA-A-ATAAAT
1 AATAATAGATAAAT
2961779 AAT-ATAGA
1 AATAATAGA
2961787 AATATAGATT
Statistics
Matches: 110, Mismatches: 7, Indels: 35
0.72 0.05 0.23
Matches are distributed among these distances:
11 3 0.03
12 17 0.15
13 16 0.15
14 23 0.21
15 40 0.36
16 8 0.07
17 3 0.03
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (14 bp):
AATAATAGATAAAT
Found at i:2961767 original size:12 final size:10
Alignment explanation
Indices: 2961637--2961782 Score: 85
Period size: 11 Copynumber: 13.9 Consensus size: 10
2961627 CACAGCGATG
2961637 TAAATAATAA
1 TAAATAATAA
2961647 CTAAATAATAA
1 -TAAATAATAA
2961658 CTAAATAGA-AA
1 -TAAATA-ATAA
2961669 T--A-AA-AA
1 TAAATAATAA
2961675 TAAATAATAA
1 TAAATAATAA
2961685 CTAAATAGA-AA
1 -TAAATA-ATAA
2961696 TAAAT-ATATA
1 TAAATAATA-A
2961706 TAATAATAATATA
1 T-A-AATAATA-A
2961719 TAAA-AATAA
1 TAAATAATAA
2961728 -AAATAATATA
1 TAAATAATA-A
2961738 TAAATAGATAA
1 TAAATA-ATAA
2961749 TATAATAATAGA
1 TA-AATAATA-A
2961761 TAGAATAATAAAA
1 TA-AATAAT--AA
2961774 TAAATAATA
1 TAAATAATA
2961783 TAGAAATATA
Statistics
Matches: 114, Mismatches: 1, Indels: 41
0.73 0.01 0.26
Matches are distributed among these distances:
6 4 0.04
7 1 0.01
8 6 0.05
9 8 0.07
10 16 0.14
11 41 0.36
12 28 0.25
13 9 0.08
14 1 0.01
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.28
Consensus pattern (10 bp):
TAAATAATAA
Found at i:2961837 original size:23 final size:23
Alignment explanation
Indices: 2961806--2961889 Score: 64
Period size: 26 Copynumber: 3.6 Consensus size: 23
2961796 TTATAAATCG
2961806 AAATA-TATTAATATAATAATAT
1 AAATATTATTAATATAATAATAT
* *
2961828 AAATATTATTAATTACTTAATATTCT
1 AAATATTATTAA-TA--TAATAATAT
* * *
2961854 TAATATTAATAACA-AATAATAT
1 AAATATTATTAATATAATAATAT
*
2961876 AAATTAATATTAAT
1 AAA-TATTATTAAT
2961890 TGCTAATAAC
Statistics
Matches: 46, Mismatches: 11, Indels: 9
0.70 0.17 0.14
Matches are distributed among these distances:
22 13 0.28
23 13 0.28
24 2 0.04
25 1 0.02
26 17 0.37
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.43
Consensus pattern (23 bp):
AAATATTATTAATATAATAATAT
Found at i:2961897 original size:26 final size:26
Alignment explanation
Indices: 2961810--2961898 Score: 82
Period size: 23 Copynumber: 3.7 Consensus size: 26
2961800 AAATCGAAAT
2961810 ATATTAA-TA-TAATAATATAAA-TA
1 ATATTAATTACTAATAATATAAATTA
* **
2961833 TTATTAATTACT--TAATAT-TCTTA
1 ATATTAATTACTAATAATATAAATTA
* *
2961856 ATATTAATAACAAATAATATAAATTA
1 ATATTAATTACTAATAATATAAATTA
*
2961882 ATATTAATTGCTAATAA
1 ATATTAATTACTAATAA
2961899 CTTGTAATTT
Statistics
Matches: 49, Mismatches: 11, Indels: 9
0.71 0.16 0.13
Matches are distributed among these distances:
23 23 0.47
24 2 0.04
25 7 0.14
26 17 0.35
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (26 bp):
ATATTAATTACTAATAATATAAATTA
Found at i:2963699 original size:16 final size:16
Alignment explanation
Indices: 2963678--2963728 Score: 84
Period size: 16 Copynumber: 3.2 Consensus size: 16
2963668 AAGAAAGAGC
*
2963678 AAATACGATAGTAAAT
1 AAATACGCTAGTAAAT
2963694 AAATACGCTAGTAAAT
1 AAATACGCTAGTAAAT
*
2963710 AAACACGCTAGTAAAT
1 AAATACGCTAGTAAAT
2963726 AAA
1 AAA
2963729 ATACTAGAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.55, C:0.12, G:0.12, T:0.22
Consensus pattern (16 bp):
AAATACGCTAGTAAAT
Found at i:2964666 original size:16 final size:17
Alignment explanation
Indices: 2964645--2964678 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
2964635 AATTAGAGAA
2964645 TTCTATTTAA-TTCTAT
1 TTCTATTTAATTTCTAT
2964661 TTCTATTTAATTTCTAT
1 TTCTATTTAATTTCTAT
2964678 T
1 T
2964679 AAATCCATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.65
Consensus pattern (17 bp):
TTCTATTTAATTTCTAT
Found at i:2967861 original size:11 final size:11
Alignment explanation
Indices: 2967845--2967870 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
2967835 TCAATCTCTA
2967845 TTTTGAAGAAT
1 TTTTGAAGAAT
2967856 TTTTGAAGAAT
1 TTTTGAAGAAT
2967867 TTTT
1 TTTT
2967871 CTTTTGAGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (11 bp):
TTTTGAAGAAT
Found at i:2969022 original size:27 final size:28
Alignment explanation
Indices: 2968964--2969022 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 28
2968954 TGAATATCTC
** *
2968964 ATTTTAAAAAAATAATAATTTATTTAAT
1 ATTTTAAAAAAATAATAATCAAGTTAAT
*
2968992 -TTTTAACAAAATAA-AATCAAGTTAAT
1 ATTTTAAAAAAATAATAATCAAGTTAAT
2969018 ATTTT
1 ATTTT
2969023 TCAAGTTAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
26 9 0.35
27 17 0.65
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (28 bp):
ATTTTAAAAAAATAATAATCAAGTTAAT
Found at i:2969036 original size:13 final size:15
Alignment explanation
Indices: 2969008--2969036 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
2968998 CAAAATAAAA
2969008 TCAAGTTAATATTTT
1 TCAAGTTAATATTTT
2969023 TCAAGTTAAT-TTTT
1 TCAAGTTAATATTTT
2969037 AACACTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 4 0.29
15 10 0.71
ACGTcount: A:0.31, C:0.07, G:0.07, T:0.55
Consensus pattern (15 bp):
TCAAGTTAATATTTT
Found at i:2969114 original size:13 final size:13
Alignment explanation
Indices: 2969096--2969126 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
2969086 TTTAAAATTT
2969096 TAAAAATTAAAAA
1 TAAAAATTAAAAA
*
2969109 TAAAAATTTAAAA
1 TAAAAATTAAAAA
2969122 TAAAA
1 TAAAA
2969127 TGTGTAGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (13 bp):
TAAAAATTAAAAA
Found at i:2969166 original size:21 final size:20
Alignment explanation
Indices: 2969115--2969168 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 20
2969105 AAAATAAAAA
*
2969115 TTTAAAATAAAATGTGTAGC
1 TTTAAAATTAAATGTGTAGC
2969135 -TTAATATATTAAATGTGTAGC
1 TTTAA-A-ATTAAATGTGTAGC
*
2969156 TTTTAACATTAAA
1 -TTTAAAATTAAA
2969169 ATTAAGGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
19 4 0.14
20 1 0.04
21 19 0.68
23 4 0.14
ACGTcount: A:0.43, C:0.06, G:0.11, T:0.41
Consensus pattern (20 bp):
TTTAAAATTAAATGTGTAGC
Found at i:2970689 original size:22 final size:22
Alignment explanation
Indices: 2970664--2970710 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
2970654 GGTGTTAAGT
2970664 TTTGGAAGGGTTTAATTAAAAA
1 TTTGGAAGGGTTTAATTAAAAA
*
2970686 TTTGTAAGGGTTTAATTAAAAA
1 TTTGGAAGGGTTTAATTAAAAA
2970708 TTT
1 TTT
2970711 TTAAATTTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.43
Consensus pattern (22 bp):
TTTGGAAGGGTTTAATTAAAAA
Found at i:2971424 original size:9 final size:8
Alignment explanation
Indices: 2971409--2971463 Score: 53
Period size: 7 Copynumber: 6.9 Consensus size: 8
2971399 TGTAGACATG
2971409 ATAAAAAT
1 ATAAAAAT
2971417 ATTAAAAAT
1 A-TAAAAAT
2971426 A-AAAAAT
1 ATAAAAAT
2971433 A-AAAAAT
1 ATAAAAAT
2971440 A-AAAAATT
1 ATAAAAA-T
*
2971448 TTAAAAAT
1 ATAAAAAT
2971456 ATATAAAA
1 ATA-AAAA
2971464 AATTCATAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
7 19 0.46
8 5 0.12
9 17 0.41
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (8 bp):
ATAAAAAT
Found at i:2971432 original size:7 final size:7
Alignment explanation
Indices: 2971409--2971446 Score: 58
Period size: 7 Copynumber: 5.3 Consensus size: 7
2971399 TGTAGACATG
2971409 ATAAAAA
1 ATAAAAA
*
2971416 TATTAAAA
1 -ATAAAAA
2971424 ATAAAAA
1 ATAAAAA
2971431 ATAAAAA
1 ATAAAAA
2971438 ATAAAAA
1 ATAAAAA
2971445 AT
1 AT
2971447 TTTAAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
7 22 0.79
8 6 0.21
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (7 bp):
ATAAAAA
Found at i:2971474 original size:20 final size:20
Alignment explanation
Indices: 2971438--2971487 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
2971428 AAAATAAAAA
*
2971438 ATAAAAAATTTTAAAAATA-T
1 ATAAAAAATTATAAAAA-ACT
2971458 ATAAAAAATTCAT-AAAAACT
1 ATAAAAAATT-ATAAAAAACT
2971478 -TAAAAAATTA
1 ATAAAAAATTA
2971488 GTATGAAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 1 0.04
19 10 0.37
20 15 0.56
21 1 0.04
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (20 bp):
ATAAAAAATTATAAAAAACT
Found at i:2972305 original size:108 final size:108
Alignment explanation
Indices: 2972116--2972340 Score: 353
Period size: 108 Copynumber: 2.1 Consensus size: 108
2972106 ATGTTGCGGA
* * *
2972116 CCGATTATCATCAAAATCCTCCTATGGATGGATACCCACCACCGTACCAACAACCTTATGCACTT
1 CCGATTATCATCAAAATCCTCCTATGGATGAATACCCACCACCATACCAACAACCTTATGCACCT
*
2972181 GGCTATGTAGTTCAAGATTATCCGCCATCTGTT-CCCCTACCAC
66 CGCTATGTAGTTCAAGATTATCCGCCATCTGTTACCCC-ACCAC
*
2972224 CCGATTATCATCAAAATCCTCCTATGGATGAATATCCACCACCATACCAACAACCTTATGCACCT
1 CCGATTATCATCAAAATCCTCCTATGGATGAATACCCACCACCATACCAACAACCTTATGCACCT
* * *
2972289 CGCTATGTAGTTCAAGATTATCCGTCGTCTGTTACCCCGCCAC
66 CGCTATGTAGTTCAAGATTATCCGCCATCTGTTACCCCACCAC
*
2972332 CCAATTATC
1 CCGATTATC
2972341 CGTCGTCTGT
Statistics
Matches: 107, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
108 103 0.96
109 4 0.04
ACGTcount: A:0.28, C:0.33, G:0.12, T:0.27
Consensus pattern (108 bp):
CCGATTATCATCAAAATCCTCCTATGGATGAATACCCACCACCATACCAACAACCTTATGCACCT
CGCTATGTAGTTCAAGATTATCCGCCATCTGTTACCCCACCAC
Found at i:2972341 original size:30 final size:30
Alignment explanation
Indices: 2972305--2972370 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 30
2972295 GTAGTTCAAG
*
2972305 ATTATCCGTCGTCTGTTACC-CCGCCACCCA
1 ATTATCCGTCGTCTG-TACCTCCACCACCCA
*
2972335 ATTATCCGTCGTCTGTCCCTCCACCACCCA
1 ATTATCCGTCGTCTGTACCTCCACCACCCA
2972365 ATTATC
1 ATTATC
2972371 GACCATCGTG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 3 0.09
30 30 0.91
ACGTcount: A:0.18, C:0.42, G:0.11, T:0.29
Consensus pattern (30 bp):
ATTATCCGTCGTCTGTACCTCCACCACCCA
Found at i:2974035 original size:30 final size:30
Alignment explanation
Indices: 2974001--2974060 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
2973991 ACTTAACAAG
*
2974001 CAAATACCTCTAAAATAATAATAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
* *
2974031 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
2974061 TAATAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.58, C:0.13, G:0.02, T:0.27
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:2976617 original size:42 final size:42
Alignment explanation
Indices: 2976558--2976718 Score: 153
Period size: 42 Copynumber: 3.7 Consensus size: 42
2976548 TCGTTTTCTC
** *
2976558 GATGCCATAGTTCAACTATGGTCTTACATATCTTCAGATAAT
1 GATGCCATAGCCCAACTATGGTCTTACATATCTTCACATAAT
* * *
2976600 GATGCCATAGCCCAACTATGGTCTTACACATATTCATAT-AT
1 GATGCCATAGCCCAACTATGGTCTTACATATCTTCACATAAT
* * *
2976641 CAATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATATT
1 -GATGCCATAGCCCAACTATGGTCTTACA--T-AT--C-T-TCACATAAT
*
2976691 GATGCCATAGCCCAGCTATGGTCTTACA
1 GATGCCATAGCCCAACTATGGTCTTACA
2976719 CGAATCACAT
Statistics
Matches: 98, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
41 2 0.02
42 60 0.61
45 2 0.02
48 1 0.01
49 32 0.33
50 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.30
Consensus pattern (42 bp):
GATGCCATAGCCCAACTATGGTCTTACATATCTTCACATAAT
Found at i:2976782 original size:46 final size:46
Alignment explanation
Indices: 2976599--2976762 Score: 178
Period size: 49 Copynumber: 3.6 Consensus size: 46
2976589 CTTCAGATAA
* *
2976599 TGATGCCATAGCCCA-ACTATGGTCTTACAC-ATAT-TCATATATCA-
1 TGATGCCATAGCCCAGA-TATGGTCTTACACGA-ATCACATATCTCAC
* * *
2976643 --ATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATAT
1 TGATGCCATAGCCCAGATATGGTCTTACACG-AATCACATATCTC--AC
*
2976690 TGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCAC
1 TGATGCCATAGCCCAGATATGGTCTTACACGAATCACATATCTCAC
*
2976736 TGATGCCATATCCCAGATATGGTCTTA
1 TGATGCCATAGCCCAGATATGGTCTTA
2976763 TACGGAAATC
Statistics
Matches: 103, Mismatches: 8, Indels: 16
0.81 0.06 0.13
Matches are distributed among these distances:
42 26 0.25
43 2 0.02
44 7 0.07
46 27 0.26
48 12 0.12
49 29 0.28
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (46 bp):
TGATGCCATAGCCCAGATATGGTCTTACACGAATCACATATCTCAC
Found at i:2976819 original size:31 final size:31
Alignment explanation
Indices: 2976784--2976963 Score: 281
Period size: 31 Copynumber: 5.8 Consensus size: 31
2976774 CTTGTCACTT
*
2976784 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
2976815 GTAGCC-AGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGA-AGCTACCACTTTTCACTGATCAG
*
2976846 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
2976877 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
**
2976908 GTAGTAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
2976939 GTAGCCAAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
2976964 TGTTATTTGT
Statistics
Matches: 137, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
30 1 0.01
31 136 0.99
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:2977044 original size:50 final size:50
Alignment explanation
Indices: 2976939--2977115 Score: 273
Period size: 50 Copynumber: 3.5 Consensus size: 50
2976929 CACTGATCAG
* * * * *
2976939 GTAGCCAAAGCTACCACTTTTCACTTGTTATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
* *
2976990 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTGATCAGGTAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
*
2977040 GTAGCCGAAGCTATTACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
2977090 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
2977116 GTTGCCATGG
Statistics
Matches: 115, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
50 92 0.80
51 23 0.20
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:2987561 original size:27 final size:27
Alignment explanation
Indices: 2987478--2987568 Score: 74
Period size: 27 Copynumber: 3.1 Consensus size: 27
2987468 CTCGTCATAT
2987478 CCATATTAATCTCCCAATCATCTATAA
1 CCATATTAATCTCCCAATCATCTATAA
* *** * *
2987505 CCATTATTATTAAACATGATTAAACATCTATAT
1 CC---A-TATTAATC-T-CCCAATCATCTATAA
2987538 CCATATTAATCTCCCAATCATCTATAA
1 CCATATTAATCTCCCAATCATCTATAA
2987565 CCAT
1 CCAT
2987569 CTATAACCAA
Statistics
Matches: 46, Mismatches: 12, Indels: 12
0.66 0.17 0.17
Matches are distributed among these distances:
27 16 0.35
28 1 0.02
29 7 0.15
30 2 0.04
31 7 0.15
32 1 0.02
33 12 0.26
ACGTcount: A:0.38, C:0.25, G:0.01, T:0.35
Consensus pattern (27 bp):
CCATATTAATCTCCCAATCATCTATAA
Found at i:2998778 original size:23 final size:23
Alignment explanation
Indices: 2998749--2998793 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
2998739 CTCTTTACAT
2998749 TTTTAAATAAT-ATATTATTATTA
1 TTTTAAATAATAATATT-TTATTA
*
2998772 TTTTAAATATTAATATTTTATT
1 TTTTAAATAATAATATTTTATT
2998794 CTTAACATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (23 bp):
TTTTAAATAATAATATTTTATTA
Found at i:2999774 original size:29 final size:29
Alignment explanation
Indices: 2999732--2999793 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
2999722 TATTTATTCT
2999732 AATACAAACTATAAAGATTCTAAAAATTA
1 AATACAAACTATAAAGATTCTAAAAATTA
2999761 AATACAAACTATAAAGATTCTAAAAATTA
1 AATACAAACTATAAAGATTCTAAAAATTA
2999790 AATA
1 AATA
2999794 TTCATAATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.60, C:0.10, G:0.03, T:0.27
Consensus pattern (29 bp):
AATACAAACTATAAAGATTCTAAAAATTA
Found at i:3001109 original size:589 final size:589
Alignment explanation
Indices: 2999993--3001162 Score: 2340
Period size: 589 Copynumber: 2.0 Consensus size: 589
2999983 TACCGATGCC
2999993 AATGCAAAAGGACGTGAGTTTAAGTACGTTAAAGCATATTATTCTCTTATTTATGGGTTAAGAAA
1 AATGCAAAAGGACGTGAGTTTAAGTACGTTAAAGCATATTATTCTCTTATTTATGGGTTAAGAAA
3000058 ATATAAAGCTTATGCCACTGATTAAAATTCAGCTAAAGTTTAAGCCACTATCAATGATTTAACTT
66 ATATAAAGCTTATGCCACTGATTAAAATTCAGCTAAAGTTTAAGCCACTATCAATGATTTAACTT
3000123 AAGTTTACACACATCTTTTCAAAGACAAACATATAATAATATGGAGTTCAATCTCTTTTCGTTAT
131 AAGTTTACACACATCTTTTCAAAGACAAACATATAATAATATGGAGTTCAATCTCTTTTCGTTAT
3000188 TTGTTTAAAAATTTGCAGAAATTACCATTAGAAACTCACCTTTGATAGATGTTATGAATGATTGT
196 TTGTTTAAAAATTTGCAGAAATTACCATTAGAAACTCACCTTTGATAGATGTTATGAATGATTGT
3000253 GTTATTAACCGAGTTGGATTTGAAGTAGATGTCTTTCTAAATGCAATGGAGTTGAGACAATGTGG
261 GTTATTAACCGAGTTGGATTTGAAGTAGATGTCTTTCTAAATGCAATGGAGTTGAGACAATGTGG
3000318 CTTAAGAAAGTGAATTTCTTTTGTTTCTTTGCAAGAATCACGACCCATGAATCAAAACGATTACC
326 CTTAAGAAAGTGAATTTCTTTTGTTTCTTTGCAAGAATCACGACCCATGAATCAAAACGATTACC
3000383 TCTAATTCTGACTTCTACTATCAATTTAAGATTTAGTTTCTAGACATATTTTATCTTTTTAATCT
391 TCTAATTCTGACTTCTACTATCAATTTAAGATTTAGTTTCTAGACATATTTTATCTTTTTAATCT
3000448 TATTATAAATCCAAATTTATTACTAAGTAAAGTAATGATATAGAGTTTTATCATATGATCATAAA
456 TATTATAAATCCAAATTTATTACTAAGTAAAGTAATGATATAGAGTTTTATCATATGATCATAAA
3000513 TTATTTTTACCGTAAAAAAAAAACATGTTAAAATGCAGAACCAGGAGGGGAAGAAAATAAACATG
521 TTATTTTTACCGTAAAAAAAAAACATGTTAAAATGCAGAACCAGGAGGGGAAGAAAATAAACATG
3000578 TTAA
586 TTAA
3000582 AATGCAAAAGGACGTGAGTTTAAGTACGTTAAAGCATATTATTCTCTTATTTATGGGTTAAGAAA
1 AATGCAAAAGGACGTGAGTTTAAGTACGTTAAAGCATATTATTCTCTTATTTATGGGTTAAGAAA
3000647 ATATAAAGCTTATGCCACTGATTAAAATTCAGCTAAAGTTTAAGCCACTATCAATGATTTAACTT
66 ATATAAAGCTTATGCCACTGATTAAAATTCAGCTAAAGTTTAAGCCACTATCAATGATTTAACTT
3000712 AAGTTTACACACATCTTTTCAAAGACAAACATATAATAATATGGAGTTCAATCTCTTTTCGTTAT
131 AAGTTTACACACATCTTTTCAAAGACAAACATATAATAATATGGAGTTCAATCTCTTTTCGTTAT
3000777 TTGTTTAAAAATTTGCAGAAATTACCATTAGAAACTCACCTTTGATAGATGTTATGAATGATTGT
196 TTGTTTAAAAATTTGCAGAAATTACCATTAGAAACTCACCTTTGATAGATGTTATGAATGATTGT
3000842 GTTATTAACCGAGTTGGATTTGAAGTAGATGTCTTTCTAAATGCAATGGAGTTGAGACAATGTGG
261 GTTATTAACCGAGTTGGATTTGAAGTAGATGTCTTTCTAAATGCAATGGAGTTGAGACAATGTGG
3000907 CTTAAGAAAGTGAATTTCTTTTGTTTCTTTGCAAGAATCACGACCCATGAATCAAAACGATTACC
326 CTTAAGAAAGTGAATTTCTTTTGTTTCTTTGCAAGAATCACGACCCATGAATCAAAACGATTACC
3000972 TCTAATTCTGACTTCTACTATCAATTTAAGATTTAGTTTCTAGACATATTTTATCTTTTTAATCT
391 TCTAATTCTGACTTCTACTATCAATTTAAGATTTAGTTTCTAGACATATTTTATCTTTTTAATCT
3001037 TATTATAAATCCAAATTTATTACTAAGTAAAGTAATGATATAGAGTTTTATCATATGATCATAAA
456 TATTATAAATCCAAATTTATTACTAAGTAAAGTAATGATATAGAGTTTTATCATATGATCATAAA
3001102 TTATTTTTACCGTAAAAAAAAAACATGTTAAAATGCAGAACCAGGAGGGGAAGAAAATAAA
521 TTATTTTTACCGTAAAAAAAAAACATGTTAAAATGCAGAACCAGGAGGGGAAGAAAATAAA
3001163 TAAAAATGAT
Statistics
Matches: 581, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
589 581 1.00
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (589 bp):
AATGCAAAAGGACGTGAGTTTAAGTACGTTAAAGCATATTATTCTCTTATTTATGGGTTAAGAAA
ATATAAAGCTTATGCCACTGATTAAAATTCAGCTAAAGTTTAAGCCACTATCAATGATTTAACTT
AAGTTTACACACATCTTTTCAAAGACAAACATATAATAATATGGAGTTCAATCTCTTTTCGTTAT
TTGTTTAAAAATTTGCAGAAATTACCATTAGAAACTCACCTTTGATAGATGTTATGAATGATTGT
GTTATTAACCGAGTTGGATTTGAAGTAGATGTCTTTCTAAATGCAATGGAGTTGAGACAATGTGG
CTTAAGAAAGTGAATTTCTTTTGTTTCTTTGCAAGAATCACGACCCATGAATCAAAACGATTACC
TCTAATTCTGACTTCTACTATCAATTTAAGATTTAGTTTCTAGACATATTTTATCTTTTTAATCT
TATTATAAATCCAAATTTATTACTAAGTAAAGTAATGATATAGAGTTTTATCATATGATCATAAA
TTATTTTTACCGTAAAAAAAAAACATGTTAAAATGCAGAACCAGGAGGGGAAGAAAATAAACATG
TTAA
Found at i:3002601 original size:61 final size:62
Alignment explanation
Indices: 3002474--3002603 Score: 183
Period size: 61 Copynumber: 2.1 Consensus size: 62
3002464 CCTTTTTTGA
* * * * *
3002474 ATTTTAAAATTAGAACTAAATTGATAAATTTTATAAATATTGAGGGATAAATTTATTTAACT
1 ATTTTAGAATTAGAACTAAAATGATAAATTTTATAAACATTGAGGGATAAATTTAGTTAAAT
* *
3002536 -TTTTAGAATTAGAACTAAAATGATAAATTTTGTAAACATTGAGGGCTAAATTT-GTTAAAT
1 ATTTTAGAATTAGAACTAAAATGATAAATTTTATAAACATTGAGGGATAAATTTAGTTAAAT
3002596 ATTTTAGA
1 ATTTTAGA
3002604 TTTAAGATCG
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
60 5 0.08
61 55 0.92
ACGTcount: A:0.43, C:0.04, G:0.12, T:0.41
Consensus pattern (62 bp):
ATTTTAGAATTAGAACTAAAATGATAAATTTTATAAACATTGAGGGATAAATTTAGTTAAAT
Found at i:3003432 original size:22 final size:22
Alignment explanation
Indices: 3003404--3003463 Score: 84
Period size: 22 Copynumber: 2.6 Consensus size: 22
3003394 TGTCGAAACC
3003404 ATTTTTTTGAAAAACAGGGTCG
1 ATTTTTTTGAAAAACAGGGTCG
*
3003426 ATTTTTTTGAAAAACGGGGTCG
1 ATTTTTTTGAAAAACAGGGTCG
3003448 ACTTTATATTTGAAAA
1 A-TTT-T-TTTGAAAA
3003464 GAAAACGAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
22 22 0.65
23 3 0.09
24 1 0.03
25 8 0.24
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.38
Consensus pattern (22 bp):
ATTTTTTTGAAAAACAGGGTCG
Found at i:3006539 original size:44 final size:45
Alignment explanation
Indices: 3006437--3006595 Score: 141
Period size: 44 Copynumber: 3.7 Consensus size: 45
3006427 ATCATCAATG
* * * * *
3006437 TGCTCCACTGCAACTTTAGAGAGATAAGGTTTATAACTTTAATCC
1 TGCTCCACTGCAACTTCAGAGAAATAAGATTTGTAACTTCAATCC
* * *
3006482 -ACTCTACTGCAACTTCAGAAAAATAAGATTTGTAACTTCAA-CC
1 TGCTCCACTGCAACTTCAGAGAAATAAGATTTGTAACTTCAATCC
* * * *
3006525 TGCTCCACTACAACTTCAGAGAAATGATATTTGT---TTTAA-CC
1 TGCTCCACTGCAACTTCAGAGAAATAAGATTTGTAACTTCAATCC
* * *
3006566 TGCTCTACTGCAACTCCAGAGAGATAAGAT
1 TGCTCCACTGCAACTTCAGAGAAATAAGAT
3006596 CTATGATTTA
Statistics
Matches: 92, Mismatches: 21, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
41 30 0.33
43 2 0.02
44 60 0.65
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (45 bp):
TGCTCCACTGCAACTTCAGAGAAATAAGATTTGTAACTTCAATCC
Found at i:3006580 original size:41 final size:42
Alignment explanation
Indices: 3006483--3006595 Score: 129
Period size: 41 Copynumber: 2.7 Consensus size: 42
3006473 CTTTAATCCA
*
3006483 CTCTACTGCAACTTCAGAAAAATAAGATTTGTAACTTCAACCTG
1 CTCTACTGCAACTTCAGAGAAATAAGATTTGT-A-TTCAACCTG
* * * * *
3006527 CTCCACTACAACTTCAGAGAAATGATATTTGT-TTTAACCTG
1 CTCTACTGCAACTTCAGAGAAATAAGATTTGTATTCAACCTG
* *
3006568 CTCTACTGCAACTCCAGAGAGATAAGAT
1 CTCTACTGCAACTTCAGAGAAATAAGAT
3006596 CTATGATTTA
Statistics
Matches: 57, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
41 30 0.53
44 27 0.47
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29
Consensus pattern (42 bp):
CTCTACTGCAACTTCAGAGAAATAAGATTTGTATTCAACCTG
Found at i:3006707 original size:137 final size:137
Alignment explanation
Indices: 3006566--3006967 Score: 597
Period size: 137 Copynumber: 2.9 Consensus size: 137
3006556 TGTTTTAACC
* * * *
3006566 TGCTCTACTGCAACTCCAGAGAGATAAGATCTATGATTTATAGATTCAATTTGTTCCACTACAAC
1 TGCTCTACTGCAACTCCAGAGAGATAAGATCTATAATTTATAGCTTCAATCTGTTCCACTGCAAC
* * *
3006631 TCCAGGGGAATAAGACTTGCTATCTTCAATCCGTTCCGCTGCAACTTCAGGGAGATAAGACTTGT
66 TCCAGGGAAATAAGACTTGCTATCTTCAGTCCGCTCCGCTGCAACTTCAGGGAGATAAGACTTGT
3006696 TTTGATA
131 TTTGATA
* *
3006703 TGCTCTACTGCAACTTCAGAGAGATGAGATCTATAATTTATAGCTTCAATCTGTTCCACTGCAAC
1 TGCTCTACTGCAACTCCAGAGAGATAAGATCTATAATTTATAGCTTCAATCTGTTCCACTGCAAC
* * *
3006768 TCCAGGGAAATAAGACTTGCTATCTTCAGCCCGCTCCGCTGCAACTTCAAGAAGATAAGACTTGT
66 TCCAGGGAAATAAGACTTGCTATCTTCAGTCCGCTCCGCTGCAACTTCAGGGAGATAAGACTTGT
*
3006833 TTTGATC
131 TTTGATA
* ** *
3006840 TGCTCTACTGTAACTCCAGAGAGATAAGATCTGCAATTTATATCTTCAATCTGTTCCACTGCAAC
1 TGCTCTACTGCAACTCCAGAGAGATAAGATCTATAATTTATAGCTTCAATCTGTTCCACTGCAAC
* ** * *
3006905 TCCAGGGAAATAAGACTTACTATCTTCCAGTCTACTCCACTGCAACTTCAGGGAGATACGACT
66 TCCAGGGAAATAAGACTTGCTATCTT-CAGTCCGCTCCGCTGCAACTTCAGGGAGATAAGACT
3006968 CGTAACTTCA
Statistics
Matches: 237, Mismatches: 27, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
137 208 0.88
138 29 0.12
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (137 bp):
TGCTCTACTGCAACTCCAGAGAGATAAGATCTATAATTTATAGCTTCAATCTGTTCCACTGCAAC
TCCAGGGAAATAAGACTTGCTATCTTCAGTCCGCTCCGCTGCAACTTCAGGGAGATAAGACTTGT
TTTGATA
Found at i:3007042 original size:44 final size:44
Alignment explanation
Indices: 3006994--3007230 Score: 194
Period size: 44 Copynumber: 5.3 Consensus size: 44
3006984 TCCATCGTAT
*
3006994 CTTCAGGGAA-ATAAGGTTAGTGGCTTCGATCTACTTCACTGCAA
1 CTTCA-GGAAGATAAGGTTAGTGGCTTCGATCTGCTTCACTGCAA
* * * *** * *
3007038 CTTCAGAAAGATAAGATTCGCCATCTTC-AGTCTGCTCCACTACAA
1 CTTCAGGAAGATAAGGTTAG-TGGCTTCGA-TCTGCTTCACTGCAA
* * ** *
3007083 CTTCAGGGAGATAAGGTTACTGGCTTCGATCTATTTCATTGCAA
1 CTTCAGGAAGATAAGGTTAGTGGCTTCGATCTGCTTCACTGCAA
* * *** *
3007127 CTTCAGGAAGATAAGATTCGCCATCTTC-AGTCTGCTCCACTGCAA
1 CTTCAGGAAGATAAGGTTAG-TGGCTTCGA-TCTGCTTCACTGCAA
* *
3007172 CTTCAAGG-AGATAAGGTTAGTGGTTTCGATCTGCTTCACTACAA
1 CTTC-AGGAAGATAAGGTTAGTGGCTTCGATCTGCTTCACTGCAA
3007216 CTTCAGGAAGATAAG
1 CTTCAGGAAGATAAG
3007231 ATTTGTCGAA
Statistics
Matches: 143, Mismatches: 41, Indels: 18
0.71 0.20 0.09
Matches are distributed among these distances:
43 6 0.04
44 72 0.50
45 62 0.43
46 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (44 bp):
CTTCAGGAAGATAAGGTTAGTGGCTTCGATCTGCTTCACTGCAA
Found at i:3007087 original size:45 final size:45
Alignment explanation
Indices: 3007017--3007233 Score: 183
Period size: 45 Copynumber: 4.9 Consensus size: 45
3007007 AGGTTAGTGG
* * *
3007017 CTTCGATCTACTTCACTGCAACTTCAGAAAGATAAGATTCGCCAT
1 CTTCGATCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCCAT
* * * * ***
3007062 CTTC-AGTCTGCTCCACTACAACTTCAGGGAGATAAGGTT-ACTGG
1 CTTCGA-TCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCCAT
** * *
3007106 CTTCGATCTATTTCATTGCAACTTCAGGAAGATAAGATTCGCCAT
1 CTTCGATCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCCAT
* * ***
3007151 CTTC-AGTCTGCTCCACTGCAACTTCAAGG-AGATAAGGTTAGTGGT
1 CTTCGA-TCTGCTCCACTGCAACTTC-AGGAAGATAAGATTCGCCAT
* *
3007196 -TTCGATCTGCTTCACTACAACTTCAGGAAGATAAGATT
1 CTTCGATCTGCTCCACTGCAACTTCAGGAAGATAAGATT
3007234 TGTCGAAATT
Statistics
Matches: 132, Mismatches: 33, Indels: 15
0.73 0.18 0.08
Matches are distributed among these distances:
43 3 0.02
44 62 0.47
45 64 0.48
46 3 0.02
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (45 bp):
CTTCGATCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCCAT
Found at i:3007098 original size:89 final size:89
Alignment explanation
Indices: 3006994--3007233 Score: 390
Period size: 89 Copynumber: 2.7 Consensus size: 89
3006984 TCCATCGTAT
* *
3006994 CTTCAGGGAAATAAGGTTAGTGGCTTCGATCTACTTCACTGCAACTTCAGAAAGATAAGATTCGC
1 CTTCAGGGAGATAAGGTTAGTGGCTTCGATCTACTTCACTGCAACTTCAGGAAGATAAGATTCGC
3007059 CATCTTCAGTCTGCTCCACTACAA
66 CATCTTCAGTCTGCTCCACTACAA
* * *
3007083 CTTCAGGGAGATAAGGTTACTGGCTTCGATCTATTTCATTGCAACTTCAGGAAGATAAGATTCGC
1 CTTCAGGGAGATAAGGTTAGTGGCTTCGATCTACTTCACTGCAACTTCAGGAAGATAAGATTCGC
*
3007148 CATCTTCAGTCTGCTCCACTGCAA
66 CATCTTCAGTCTGCTCCACTACAA
* * * *
3007172 CTTCAAGGAGATAAGGTTAGTGGTTTCGATCTGCTTCACTACAACTTCAGGAAGATAAGATT
1 CTTCAGGGAGATAAGGTTAGTGGCTTCGATCTACTTCACTGCAACTTCAGGAAGATAAGATT
3007234 TGTCGAAATT
Statistics
Matches: 138, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
89 138 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (89 bp):
CTTCAGGGAGATAAGGTTAGTGGCTTCGATCTACTTCACTGCAACTTCAGGAAGATAAGATTCGC
CATCTTCAGTCTGCTCCACTACAA
Found at i:3008973 original size:20 final size:20
Alignment explanation
Indices: 3008937--3008979 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
3008927 GGCCTTTTAC
*
3008937 AAAAATAAACCATTACAACT
1 AAAAATAAACCATTACAAAT
*
3008957 AAAATTAAACCCA-TACAAAT
1 AAAAATAAA-CCATTACAAAT
3008977 AAA
1 AAA
3008980 CCCAAAACCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 17 0.85
21 3 0.15
ACGTcount: A:0.63, C:0.19, G:0.00, T:0.19
Consensus pattern (20 bp):
AAAAATAAACCATTACAAAT
Found at i:3011722 original size:52 final size:52
Alignment explanation
Indices: 3011651--3011998 Score: 468
Period size: 52 Copynumber: 6.9 Consensus size: 52
3011641 ATCAAGTGAC
* **
3011651 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
3011703 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
3011755 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* **
3011801 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
3011853 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
*
3011899 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
** *
3011951 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
3011999 AGTGATAAGT
Statistics
Matches: 264, Mismatches: 20, Indels: 24
0.86 0.06 0.08
Matches are distributed among these distances:
46 85 0.32
52 179 0.68
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (52 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
Found at i:3011773 original size:98 final size:98
Alignment explanation
Indices: 3011703--3012009 Score: 438
Period size: 98 Copynumber: 3.1 Consensus size: 98
3011693 TGACAAGTGG
* *
3011703 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
* * *
3011768 ATAGCTTCGGCTATACTTATCTGATCAAGTGAC
66 ATAGCTACGACTATACTGATCTGATCAAGTGAC
* **
3011801 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
* * *
3011866 ATAGCTTCGGCTATACTTATCTGATCAAGTGAC
66 ATAGCTACGACTATACTGATCTGATCAAGTGAC
* *
3011899 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
* * *
3011964 ATAGCTTTA-G-CTACACTTATCTGATCAAGAGAC
66 ATAGC--TACGACTATACTGATCTGATCAAGTGAC
3011997 AAAGTGATAAGTG
1 AAAGTGATAAGTG
3012010 GCTACACTTA
Statistics
Matches: 194, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
98 192 0.99
99 1 0.01
100 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (98 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
ATAGCTACGACTATACTGATCTGATCAAGTGAC
Found at i:3011857 original size:150 final size:144
Alignment explanation
Indices: 3011637--3011998 Score: 580
Period size: 150 Copynumber: 2.4 Consensus size: 144
3011627 TTTGAGTACT
3011637 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
3011702 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGT
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------AAAGTGATAAGT
*
3011767 AATAGCTTCGGCTATACTTA
125 AATAGCTTCGGCTACACTTA
3011787 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
3011852 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGATAGC
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTAATAGC
3011917 TTCGGCTACACTTA
131 TTCGGCTACACTTA
* *
3011931 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
1 TCTGATCAAGTGAC------AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGA
3011996 CAA
60 CAA
3011999 AGTGATAAGT
Statistics
Matches: 202, Mismatches: 4, Indels: 12
0.93 0.02 0.06
Matches are distributed among these distances:
144 44 0.22
150 158 0.78
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (144 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTAATAGC
TTCGGCTACACTTA
Found at i:3012017 original size:37 final size:37
Alignment explanation
Indices: 3011973--3012081 Score: 177
Period size: 37 Copynumber: 3.0 Consensus size: 37
3011963 GATAGCTTTA
3011973 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
3012010 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
3012047 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
3012082 ATCATACGTA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
35 11 0.16
36 4 0.06
37 52 0.78
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:3013255 original size:21 final size:20
Alignment explanation
Indices: 3013202--3013255 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 20
3013192 ATTAATATTA
* *
3013202 GTATATGTTTTATTATATAT
1 GTATATATTTAATTATATAT
*
3013222 GTATAAATCTTTAATATATATAT
1 GTAT--ATATTTAAT-TATATAT
3013245 GTATATATTTA
1 GTATATATTTA
3013256 TGTAGTATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 4 0.14
21 6 0.21
22 7 0.25
23 11 0.39
ACGTcount: A:0.37, C:0.02, G:0.07, T:0.54
Consensus pattern (20 bp):
GTATATATTTAATTATATAT
Found at i:3013345 original size:24 final size:24
Alignment explanation
Indices: 3013302--3013364 Score: 76
Period size: 24 Copynumber: 2.6 Consensus size: 24
3013292 TTCTAATATG
3013302 TATATATTATGTA-A-ATATTTTAA
1 TATATATTATGTATACAT-TTTTAA
*
3013325 TACTATATTATGTATACATTTTTTA
1 TA-TATATTATGTATACATTTTTAA
*
3013350 TATATATTACGTATA
1 TATATATTATGTATA
3013365 TATATCTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
23 2 0.06
24 23 0.66
25 8 0.23
26 2 0.06
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (24 bp):
TATATATTATGTATACATTTTTAA
Found at i:3013380 original size:15 final size:14
Alignment explanation
Indices: 3013361--3013398 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
3013351 ATATATTACG
3013361 TATATATATCTTTT
1 TATATATATCTTTT
*
3013375 TA-ATATTATATTTT
1 TATATA-TATCTTTT
3013389 TATATATATC
1 TATATATATC
3013399 ATGTATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
13 3 0.15
14 14 0.70
15 3 0.15
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (14 bp):
TATATATATCTTTT
Found at i:3013393 original size:37 final size:37
Alignment explanation
Indices: 3013344--3013435 Score: 103
Period size: 37 Copynumber: 2.4 Consensus size: 37
3013334 ATGTATACAT
* *
3013344 TTTTTATATATATTACGTATATATATCTTTTTAATATTATA
1 TTTTTATATATA-T-C--ATATATATATTTTTAATACTATA
*
3013385 TTTTTATATATATCATGTATATATTTTTAATACTATA
1 TTTTTATATATATCATATATATATTTTTAATACTATA
*
3013422 TTATATATATATAT
1 TT-TTTATATATAT
3013436 ATTTTTACAT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
37 22 0.48
38 10 0.22
39 1 0.02
40 1 0.02
41 12 0.26
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (37 bp):
TTTTTATATATATCATATATATATTTTTAATACTATA
Found at i:3013431 original size:66 final size:67
Alignment explanation
Indices: 3013316--3013450 Score: 184
Period size: 66 Copynumber: 2.0 Consensus size: 67
3013306 TATTATGTAA
* * * *
3013316 ATATTTTAATACTATATTATGTATACATTTTTTATATATATTACGTATATATATCTTTTTA-ATA
1 ATATTTTAATACTATATCATGTATACATTTTTAATATATATTACATATATATATATTTTTACATA
3013380 TT
66 TT
* * *
3013382 ATATTTTTATA-TATATCATGTATATATTTTTAATACTATATTATATATATATATATTTTTACAT
1 ATATTTTAATACTATATCATGTATACATTTTTAATA-TATATTACATATATATATATTTTTACAT
3013446 ATT
65 ATT
3013449 AT
1 AT
3013451 CTTATGTATA
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
65 21 0.35
66 32 0.53
67 7 0.12
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.56
Consensus pattern (67 bp):
ATATTTTAATACTATATCATGTATACATTTTTAATATATATTACATATATATATATTTTTACATA
TT
Found at i:3013432 original size:27 final size:25
Alignment explanation
Indices: 3013377--3013582 Score: 122
Period size: 25 Copynumber: 8.2 Consensus size: 25
3013367 TATCTTTTTA
*
3013377 ATAT-TATATTTTT-ATA-TATATC
1 ATATATATATTTTTAATACTATATT
*
3013399 ATGTATATATTTTTAATACTATATTATAT
1 ATATATATATTTTTAATAC--TA-TAT-T
* *
3013428 ATATATATATTTTTACATATTATCTT
1 ATATATATATTTTTA-ATACTATATT
*
3013454 ATGTATATATTTTTTAATAACTATATT
1 ATATATATA-TTTTTAAT-ACTATATT
* * **
3013481 ATGTATGTATTTTTAACGCTATATT
1 ATATATATATTTTTAATACTATATT
* *
3013506 ATGTACATATTTTTAATAC--TA-T
1 ATATATATATTTTTAATACTATATT
* * * *
3013528 GTATATA-CTTTTTATTCCTATTATT
1 ATATATATATTTTTAATACTA-TATT
*
3013553 ACATATATA-TTTTAATACATATATGT
1 ATATATATATTTTTAATAC-TATAT-T
3013579 ATAT
1 ATAT
3013583 TATTATTATT
Statistics
Matches: 140, Mismatches: 27, Indels: 30
0.71 0.14 0.15
Matches are distributed among these distances:
21 8 0.06
22 8 0.06
23 11 0.08
24 5 0.04
25 38 0.27
26 24 0.17
27 24 0.17
28 5 0.04
29 14 0.10
30 3 0.02
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.54
Consensus pattern (25 bp):
ATATATATATTTTTAATACTATATT
Found at i:3013461 original size:55 final size:53
Alignment explanation
Indices: 3013377--3013482 Score: 153
Period size: 52 Copynumber: 2.0 Consensus size: 53
3013367 TATCTTTTTA
*
3013377 ATATTATATTTTTATATATATCATGTATATA-TTTTTAAT-ACTATATTATAT
1 ATATTATATTTTTACATATATCATGTATATATTTTTTAATAACTATATTATAT
3013428 ATATATATATTTTTACATATTATCTTATGTATATATTTTTTAATAACTATATTAT
1 ATAT-TATATTTTTACATA-TATC--ATGTATATATTTTTTAATAACTATATTAT
3013483 GTATGTATTT
Statistics
Matches: 48, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
51 4 0.08
52 13 0.27
53 4 0.08
55 9 0.19
56 8 0.17
57 10 0.21
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.57
Consensus pattern (53 bp):
ATATTATATTTTTACATATATCATGTATATATTTTTTAATAACTATATTATAT
Found at i:3013505 original size:57 final size:55
Alignment explanation
Indices: 3013399--3013527 Score: 144
Period size: 55 Copynumber: 2.4 Consensus size: 55
3013389 TATATATATC
*
3013399 ATGTATATATTTTTAATACTATATTATATATATATATATTTTTACATATTATCTT
1 ATGTATATATTTTTAATACTATATTATATATATATATATTTTAACATATTATCTT
* * *
3013454 ATGTATATATTTTTTAATAACTATA-T-TATGTATGTAT-TTTTAACGCTA-TA--TT
1 ATGTATATA-TTTTTAAT-ACTATATTATATATATATATATTTTAAC-ATATTATCTT
*
3013506 ATGTACATATTTTTAATACTAT
1 ATGTATATATTTTTAATACTAT
3013528 GTATATACTT
Statistics
Matches: 66, Mismatches: 5, Indels: 11
0.80 0.06 0.13
Matches are distributed among these distances:
50 5 0.08
51 8 0.12
52 10 0.15
54 8 0.12
55 20 0.30
56 9 0.14
57 6 0.09
ACGTcount: A:0.35, C:0.06, G:0.05, T:0.54
Consensus pattern (55 bp):
ATGTATATATTTTTAATACTATATTATATATATATATATTTTAACATATTATCTT
Found at i:3016347 original size:27 final size:28
Alignment explanation
Indices: 3016317--3016413 Score: 88
Period size: 28 Copynumber: 3.2 Consensus size: 28
3016307 CTTTTTTTAA
3016317 TTTTAAAATTAGAACTAAATTGATAAAT
1 TTTTAAAATTAGAACTAAATTGATAAAT
* *
3016345 TTTATAAATATTGAGGGA-TAAATTTATTTAAAT
1 TTT-TAAA-ATT-A-GAACTAAATTGA--TAAAT
* *
3016378 TTTTAGAATTAGAACTAAAATGATAAAT
1 TTTTAAAATTAGAACTAAATTGATAAAT
3016406 TTTGTAAA
1 TTT-TAAA
3016414 TATTGAGGGC
Statistics
Matches: 54, Mismatches: 7, Indels: 15
0.71 0.09 0.20
Matches are distributed among these distances:
28 11 0.20
29 9 0.17
30 10 0.19
31 11 0.20
32 5 0.09
33 8 0.15
ACGTcount: A:0.46, C:0.02, G:0.10, T:0.41
Consensus pattern (28 bp):
TTTTAAAATTAGAACTAAATTGATAAAT
Found at i:3016463 original size:61 final size:61
Alignment explanation
Indices: 3016317--3016495 Score: 191
Period size: 61 Copynumber: 2.9 Consensus size: 61
3016307 CTTTTTTTAA
* * * *
3016317 TTTTAAAATTAGAACTAAATTGATAAATTTTATAAATATTGAGGGATAAATTTATTTAAAT
1 TTTTAGAATTAGAACTAAATTGATAAATTTTGTAAATATTGAGGGATAAATTTGTTGAAAT
* *
3016378 TTTTAGAATTAGAACTAAAATGATAAATTTTGTAAATATTGAGGGCTAAATTTGTTG-AAT
1 TTTTAGAATTAGAACTAAATTGATAAATTTTGTAAATATTGAGGGATAAATTTGTTGAAAT
* * * ** * * *
3016438 ATTTTAGATTTAAGATC-GAATTGATAAAACTTGTAAACATTGAAAGGTTAAATTTGTT
1 -TTTTAGAATT-AGAACTAAATTGATAAATTTTGTAAATATTG-AGGGATAAATTTGTT
3016496 ATTAGGCTAA
Statistics
Matches: 100, Mismatches: 15, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
60 3 0.03
61 80 0.80
62 17 0.17
ACGTcount: A:0.42, C:0.03, G:0.14, T:0.41
Consensus pattern (61 bp):
TTTTAGAATTAGAACTAAATTGATAAATTTTGTAAATATTGAGGGATAAATTTGTTGAAAT
Found at i:3019351 original size:46 final size:46
Alignment explanation
Indices: 3019266--3019353 Score: 110
Period size: 46 Copynumber: 1.9 Consensus size: 46
3019256 TTAGGTTTTA
* *
3019266 TATATTAAATTATATATATATATTATAATGATTATTATTATAGTTT
1 TATATTAAATTATATATATATATTATAATAATAATTATTATAGTTT
3019312 TATATTAAATTAT-TATGAT-TATT-TAATTAATAATGTATTATA
1 TATATTAAATTATATAT-ATATATTATAA-TAATAAT-TATTATA
3019354 AATAAATTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
44 3 0.08
45 12 0.32
46 22 0.59
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (46 bp):
TATATTAAATTATATATATATATTATAATAATAATTATTATAGTTT
Found at i:3026759 original size:79 final size:79
Alignment explanation
Indices: 3026628--3026784 Score: 224
Period size: 79 Copynumber: 2.0 Consensus size: 79
3026618 AAGATGATGG
* * *
3026628 TTCACAGTACCCCTGGCTCAACCAGTAAGCTAGGTCAAACCAGAGATCAACCACCCAATGATCCG
1 TTCACAGTACCCCTGGCTCAACCAGTAAGCTAGGACAAACAAGAGATCAACCACCCAAAGATCCG
3026693 GACCCGAAGTAGCA
66 GACCCGAAGTAGCA
* * * * * * *
3026707 TTCACAGTATCCCTGGTTCACCCAGTAAGTTAGGACGAACAAGAGATGAACCACGCAAAGATCCG
1 TTCACAGTACCCCTGGCTCAACCAGTAAGCTAGGACAAACAAGAGATCAACCACCCAAAGATCCG
3026772 GACCCGAAGTAGC
66 GACCCGAAGTAGC
3026785 CAAACCAGCT
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
79 68 1.00
ACGTcount: A:0.33, C:0.30, G:0.21, T:0.16
Consensus pattern (79 bp):
TTCACAGTACCCCTGGCTCAACCAGTAAGCTAGGACAAACAAGAGATCAACCACCCAAAGATCCG
GACCCGAAGTAGCA
Found at i:3032793 original size:17 final size:18
Alignment explanation
Indices: 3032760--3032794 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
3032750 TAAAAAATGA
3032760 TTAGGTCTAATTATGATT
1 TTAGGTCTAATTATGATT
*
3032778 TTAGTTCTAA-TATGATT
1 TTAGGTCTAATTATGATT
3032795 AAATTTAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.29, C:0.06, G:0.14, T:0.51
Consensus pattern (18 bp):
TTAGGTCTAATTATGATT
Found at i:3033627 original size:14 final size:14
Alignment explanation
Indices: 3033608--3033651 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
3033598 AACACTCGAC
3033608 GATTGGTTATAGAT
1 GATTGGTTATAGAT
3033622 GATTGGTTAT--A-
1 GATTGGTTATAGAT
3033633 GA-TGGTTATAGAT
1 GATTGGTTATAGAT
3033646 GATTGG
1 GATTGG
3033652 GAGATTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
10 7 0.27
11 2 0.08
12 2 0.08
13 2 0.08
14 13 0.50
ACGTcount: A:0.27, C:0.00, G:0.32, T:0.41
Consensus pattern (14 bp):
GATTGGTTATAGAT
Found at i:3042898 original size:31 final size:31
Alignment explanation
Indices: 3042863--3042924 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
3042853 AATGACTTAA
*
3042863 TAAATAAAAACTTCTCAATAGTTTAGTGACT
1 TAAATAAAAACTTCTCAATACTTTAGTGACT
* * *
3042894 TAAATGAAAACTTTTGAATACTTTAGTGACT
1 TAAATAAAAACTTCTCAATACTTTAGTGACT
3042925 ATTTTGTAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.37
Consensus pattern (31 bp):
TAAATAAAAACTTCTCAATACTTTAGTGACT
Found at i:3044788 original size:49 final size:49
Alignment explanation
Indices: 3044713--3044810 Score: 162
Period size: 49 Copynumber: 2.0 Consensus size: 49
3044703 CATGCAAACT
*
3044713 TATTAACTGATAATTAATGCGTACAATGGAGTG-TGTTGCTGTAAATTAG
1 TATTAACTGATAATTAATGCGCACAATGGAGTGCT-TTGCTGTAAATTAG
*
3044762 TATTAACTGCTAATTAATGCGCACAATGGAGTGCTTTGCTGTAAATTAG
1 TATTAACTGATAATTAATGCGCACAATGGAGTGCTTTGCTGTAAATTAG
3044811 AAGCCTAGAT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
49 45 0.98
50 1 0.02
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36
Consensus pattern (49 bp):
TATTAACTGATAATTAATGCGCACAATGGAGTGCTTTGCTGTAAATTAG
Found at i:3053784 original size:30 final size:30
Alignment explanation
Indices: 3053741--3053816 Score: 84
Period size: 30 Copynumber: 2.5 Consensus size: 30
3053731 TACTATTTAA
* *
3053741 AAAGTATATTTTTAT-AATTTTTAAAGGA-T
1 AAAGTAAAATTTTATCAA-TTTTAAAGGACT
*
3053770 TAAGTCAAAATTTTATCAATTTTAAAGGACT
1 AAAGT-AAAATTTTATCAATTTTAAAGGACT
*
3053801 AAAGTATAATTTTATC
1 AAAGTAAAATTTTATC
3053817 TTTACTAATT
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
29 4 0.10
30 28 0.72
31 7 0.18
ACGTcount: A:0.42, C:0.05, G:0.09, T:0.43
Consensus pattern (30 bp):
AAAGTAAAATTTTATCAATTTTAAAGGACT
Found at i:3054630 original size:5 final size:5
Alignment explanation
Indices: 3054620--3054654 Score: 56
Period size: 5 Copynumber: 7.4 Consensus size: 5
3054610 TTACGTGATA
3054620 AAAAT AAAAT AAAAT AAAAT AAAAT --AAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AA
3054655 TAATTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 3 0.11
5 25 0.89
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:3054640 original size:15 final size:13
Alignment explanation
Indices: 3054620--3054654 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 13
3054610 TTACGTGATA
3054620 AAAATAAAATAAAAT
1 AAAATAAAAT--AAT
3054635 AAAATAAAATAAT
1 AAAATAAAATAAT
3054648 AAAATAA
1 AAAATAA
3054655 TAATTTTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 10 0.50
15 10 0.50
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AAAATAAAATAAT
Found at i:3054658 original size:11 final size:11
Alignment explanation
Indices: 3054617--3054658 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
3054607 TAATTACGTG
*
3054617 ATAAAAATAAA
1 ATAATAATAAA
3054628 ATAA-AATAAA
1 ATAATAATAAA
3054638 ATAAAATAATAAA
1 AT--AATAATAAA
3054651 ATAATAAT
1 ATAATAAT
3054659 TTTATAATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 8 0.29
11 10 0.36
12 2 0.07
13 8 0.29
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (11 bp):
ATAATAATAAA
Found at i:3056234 original size:31 final size:30
Alignment explanation
Indices: 3056163--3056236 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 30
3056153 TCAACCGGCT
* *
3056163 AATAGCTTAGTGACTTAAATGATAAGTTTC
1 AATAGTTTAGTGACTTAAATGAAAAGTTTC
* * *
3056193 ACATAATTTAGTGACTTAAATGAAAATTTTTG
1 A-ATAGTTTAGTGACTTAAATGAAAA-GTTTC
3056225 AATAGTTTAGTG
1 AATAGTTTAGTG
3056237 GCTATTTTGT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
30 1 0.03
31 31 0.86
32 4 0.11
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.39
Consensus pattern (30 bp):
AATAGTTTAGTGACTTAAATGAAAAGTTTC
Found at i:3063722 original size:85 final size:85
Alignment explanation
Indices: 3063622--3063792 Score: 288
Period size: 85 Copynumber: 2.0 Consensus size: 85
3063612 CTATTAGATA
** *
3063622 TATGATGAAATTTTTTTATGTTAAGCTTATACCTATGTTATCTAAGTTTCGTATAGAAGCTTTAT
1 TATGATGAAATTTTTTTATGTTAAGCTTATACCTATGCCATCTAAGTTTCATATAGAAGCTTTAT
3063687 CCTTTACCCCAAACAAATCT
66 CCTTTACCCCAAACAAATCT
* *
3063707 TATGATGAAATTTTTTTATGTTCAGCTTGTACCTATGCCATCTAAGTTTCATATAGAAGCTTTAT
1 TATGATGAAATTTTTTTATGTTAAGCTTATACCTATGCCATCTAAGTTTCATATAGAAGCTTTAT
*
3063772 CCTTTACCCCGAACAAATCT
66 CCTTTACCCCAAACAAATCT
3063792 T
1 T
3063793 GTCATAAGAA
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 80 1.00
ACGTcount: A:0.29, C:0.18, G:0.11, T:0.42
Consensus pattern (85 bp):
TATGATGAAATTTTTTTATGTTAAGCTTATACCTATGCCATCTAAGTTTCATATAGAAGCTTTAT
CCTTTACCCCAAACAAATCT
Found at i:3071777 original size:24 final size:23
Alignment explanation
Indices: 3071743--3071790 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 23
3071733 AAATGTGTTT
3071743 TTTTCTTTTAATCTAAGTGAAAATA
1 TTTTCTTTTAATCTAA-T-AAAATA
*
3071768 TTTT-TTTTAATTTAATAAAATA
1 TTTTCTTTTAATCTAATAAAATA
3071790 T
1 T
3071791 CATGTCAGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 7 0.32
23 1 0.05
24 10 0.45
25 4 0.18
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (23 bp):
TTTTCTTTTAATCTAATAAAATA
Found at i:3081286 original size:109 final size:108
Alignment explanation
Indices: 3081096--3081310 Score: 403
Period size: 109 Copynumber: 2.0 Consensus size: 108
3081086 AAAGGATCGG
* *
3081096 TGGCGACTCCCTATTTATTTCAAAATCAAATGTCAAATTTCAAACTTTTTTCCATAAATCGCCAC
1 TGGCGACTCCCTATTTATTTCAAAATCAAACGTCAAATTTCAAACTTTTTTCCATAAATCACCAC
3081161 AATTAGCGACCAAGCTACGCTAAAATTTTTACGTCGCTACAGC
66 AATTAGCGACCAAGCTACGCTAAAATTTTTACGTCGCTACAGC
3081204 TGGCGACTCCACTATTTATTTCAAAATCAAACGTCAAATTTCAAACTTTTTTCCATAAATCACCA
1 TGGCGACTCC-CTATTTATTTCAAAATCAAACGTCAAATTTCAAACTTTTTTCCATAAATCACCA
3081269 CAATTAGCGACCAAGCTACGCTAAAATTTTTACGTCGCTACA
65 CAATTAGCGACCAAGCTACGCTAAAATTTTTACGTCGCTACA
3081311 CAAACAATCC
Statistics
Matches: 104, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
108 10 0.10
109 94 0.90
ACGTcount: A:0.33, C:0.25, G:0.10, T:0.31
Consensus pattern (108 bp):
TGGCGACTCCCTATTTATTTCAAAATCAAACGTCAAATTTCAAACTTTTTTCCATAAATCACCAC
AATTAGCGACCAAGCTACGCTAAAATTTTTACGTCGCTACAGC
Found at i:3082297 original size:22 final size:22
Alignment explanation
Indices: 3082272--3082315 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
3082262 TCCGCCAAAG
*
3082272 TTAAATAAGTGTGGTGAAGCCA
1 TTAAATAAGTGTGGTCAAGCCA
3082294 TTAAATAAGTGTGGTCAAGCCA
1 TTAAATAAGTGTGGTCAAGCCA
3082316 CCAGAATTGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.27
Consensus pattern (22 bp):
TTAAATAAGTGTGGTCAAGCCA
Found at i:3082841 original size:5 final size:5
Alignment explanation
Indices: 3082831--3082862 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
3082821 CAAATTCGCA
3082831 AAAAG AAAAG AAAAG AAAAG AAAAG -AAAG AAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAA
3082863 TCACAAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:3087546 original size:16 final size:16
Alignment explanation
Indices: 3087505--3087564 Score: 59
Period size: 16 Copynumber: 3.8 Consensus size: 16
3087495 AGATTAGGTA
3087505 GCAT-CATACATACAT
1 GCATACATACATACAT
* * *
3087520 GCTTACGTACATGCAT
1 GCATACATACATACAT
* *
3087536 ACATACATACATGCAT
1 GCATACATACATACAT
*
3087552 GCATATATACATA
1 GCATACATACATA
3087565 TATATATGTA
Statistics
Matches: 35, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
15 3 0.09
16 32 0.91
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.28
Consensus pattern (16 bp):
GCATACATACATACAT
Found at i:3087556 original size:12 final size:12
Alignment explanation
Indices: 3087509--3087543 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
3087499 TAGGTAGCAT
3087509 CATACATACATG
1 CATACATACATG
* *
3087521 CTTACGTACATG
1 CATACATACATG
3087533 CATACATACAT
1 CATACATACAT
3087544 ACATGCATGC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.37, C:0.26, G:0.09, T:0.29
Consensus pattern (12 bp):
CATACATACATG
Found at i:3088386 original size:58 final size:58
Alignment explanation
Indices: 3088296--3088411 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
3088286 CTTATTTATT
3088296 CCATCAAGTTTAGGGGTGAAGCCAAAAATTGCTTTAGAAAGGTCAGAGACGAGTTAAA
1 CCATCAAGTTTAGGGGTGAAGCCAAAAATTGCTTTAGAAAGGTCAGAGACGAGTTAAA
3088354 CCATCAAGTTTAGGGGTGAAGCCAAAAATTGCTTTAGAAAGGTCAGAGACGAGTTAAA
1 CCATCAAGTTTAGGGGTGAAGCCAAAAATTGCTTTAGAAAGGTCAGAGACGAGTTAAA
3088412 GTTCAAATTT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.22
Consensus pattern (58 bp):
CCATCAAGTTTAGGGGTGAAGCCAAAAATTGCTTTAGAAAGGTCAGAGACGAGTTAAA
Found at i:3091270 original size:19 final size:17
Alignment explanation
Indices: 3091238--3091282 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 17
3091228 ATAAATATTT
3091238 TTAAAATAAAATAATAA
1 TTAAAATAAAATAATAA
3091255 TTAATAATAAATATAATAA
1 TTAA-AATAAA-ATAATAA
*
3091274 TTTAAATAA
1 TTAAAATAA
3091283 GTTTTAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 4 0.16
18 11 0.44
19 10 0.40
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
TTAAAATAAAATAATAA
Found at i:3093667 original size:53 final size:53
Alignment explanation
Indices: 3093607--3093715 Score: 218
Period size: 53 Copynumber: 2.1 Consensus size: 53
3093597 TTACGTCTTA
3093607 TTGCTCTTTGCAATGTTCTCTATAAAATTGTAGCCAAAGTTCTTGCCAATAGG
1 TTGCTCTTTGCAATGTTCTCTATAAAATTGTAGCCAAAGTTCTTGCCAATAGG
3093660 TTGCTCTTTGCAATGTTCTCTATAAAATTGTAGCCAAAGTTCTTGCCAATAGG
1 TTGCTCTTTGCAATGTTCTCTATAAAATTGTAGCCAAAGTTCTTGCCAATAGG
3093713 TTG
1 TTG
3093716 AAAGCTATTT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 56 1.00
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (53 bp):
TTGCTCTTTGCAATGTTCTCTATAAAATTGTAGCCAAAGTTCTTGCCAATAGG
Found at i:3097664 original size:17 final size:17
Alignment explanation
Indices: 3097642--3097677 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
3097632 CTAATTTATT
*
3097642 TGAGCCTTAATTACTTA
1 TGAGCCCTAATTACTTA
3097659 TGAGCCCTAATTACTTA
1 TGAGCCCTAATTACTTA
3097676 TG
1 TG
3097678 TTCAATCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (17 bp):
TGAGCCCTAATTACTTA
Found at i:3098447 original size:22 final size:22
Alignment explanation
Indices: 3098422--3098467 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
3098412 GATGAAGGAA
3098422 AAAGAATTAAACGCGACCTTTG
1 AAAGAATTAAACGCGACCTTTG
*
3098444 AAAGAATTAAGCGCGACCTTTG
1 AAAGAATTAAACGCGACCTTTG
3098466 AA
1 AA
3098468 GTGATTTTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.41, C:0.17, G:0.20, T:0.22
Consensus pattern (22 bp):
AAAGAATTAAACGCGACCTTTG
Found at i:3098727 original size:27 final size:26
Alignment explanation
Indices: 3098657--3098877 Score: 211
Period size: 26 Copynumber: 8.6 Consensus size: 26
3098647 AAACGAAACA
* *
3098657 AAATAATATATAAAACAATTTGAAGT
1 AAATAATATATAAAACAATTTAAAAT
* *
3098683 AAAT-A-GTACAAAACAATTTAAAAT
1 AAATAATATATAAAACAATTTAAAAT
* *
3098707 AAATAATATGTAAAACAAATTAAAAT
1 AAATAATATATAAAACAATTTAAAAT
* *
3098733 AAATAATATACAAAGCAATTTAAAAT
1 AAATAATATATAAAACAATTTAAAAT
* *
3098759 AAATAATATATAAGACACTTT---A-
1 AAATAATATATAAAACAATTTAAAAT
* * * *
3098781 CAATAACATATAAAAGAATTTAAGAT
1 AAATAATATATAAAACAATTTAAAAT
*
3098807 AAATAATATATAAAATAAATTTAAAAT
1 AAATAATATATAAAA-CAATTTAAAAT
* *
3098834 AAATAATATACAAAACAGTTTAAAAAT
1 AAATAATATATAAAACAATTT-AAAAT
3098861 AAATGATATATATAAAA
1 AAAT-A-ATATATAAAA
3098878 AAACCAATTC
Statistics
Matches: 156, Mismatches: 29, Indels: 17
0.77 0.14 0.08
Matches are distributed among these distances:
22 16 0.10
23 1 0.01
24 19 0.12
25 3 0.02
26 75 0.48
27 32 0.21
28 1 0.01
29 9 0.06
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.29
Consensus pattern (26 bp):
AAATAATATATAAAACAATTTAAAAT
Found at i:3098801 original size:48 final size:50
Alignment explanation
Indices: 3098657--3099023 Score: 250
Period size: 50 Copynumber: 7.2 Consensus size: 50
3098647 AAACGAAACA
* * * * * *
3098657 AAATAATATATAAAACAATTTGAAGTAAATAGTACAAAACAATTTAAAAT
1 AAATAATATATAAAACAAATTAAAATAAATAATATAAAAGAATTTAAAAT
*
3098707 AAATAATATGTAAAACAAATTAAAATAAATAATATACAAAGCAATTTAAAAT
1 AAATAATATATAAAACAAATTAAAATAAATAATATA-AAAG-AATTTAAAAT
* ** * * *
3098759 AAATAATATATAAGACACTTTACAAT-AA-CATATAAAAGAATTTAAGAT
1 AAATAATATATAAAACAAATTAAAATAAATAATATAAAAGAATTTAAAAT
*
3098807 AAATAATATATAAAATAAATTTAAAATAAATAATATACAAA-ACAGTTTAAAAAT
1 AAATAATATATAAAACAAA-TTAAAATAAATAATATA-AAAGA-A-TTT-AAAAT
** * * *
3098861 AAATGATATATATAAAA-AAA-CCAATTCAA-AATGAATAATAG--TTTAAAAT
1 AAAT-A-ATATATAAAACAAATTAAAATAAATAAT--ATAAAAGAATTTAAAAT
* * * * * *
3098910 AAATTATATATAAAA-AAATTTAAAATGGATAATACTTTGAAATAGTTTAAAAT
1 AAATAATATATAAAACAAA-TTAAAAT--A-AATAATATAAAAGAATTTAAAAT
* * * * *
3098963 ACATAATATGTGAAA-AACTTAAAATAAATAATAATAAAATAATTTAAAAT
1 AAATAATATATAAAACAAATTAAAATAAATAAT-ATAAAAGAATTTAAAAT
3099013 AAATAATATAT
1 AAATAATATAT
3099024 GAGACAAAAG
Statistics
Matches: 247, Mismatches: 47, Indels: 46
0.73 0.14 0.14
Matches are distributed among these distances:
47 13 0.05
48 24 0.10
49 27 0.11
50 64 0.26
51 14 0.06
52 47 0.19
53 33 0.13
54 11 0.04
55 4 0.02
56 10 0.04
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.30
Consensus pattern (50 bp):
AAATAATATATAAAACAAATTAAAATAAATAATATAAAAGAATTTAAAAT
Found at i:3098935 original size:26 final size:26
Alignment explanation
Indices: 3098902--3099023 Score: 104
Period size: 25 Copynumber: 4.7 Consensus size: 26
3098892 TGAATAATAG
* *
3098902 TTTAAAATAAATTATATATAAAAAAA
1 TTTAAAATAAATAATATATAAAACAA
** * * * *
3098928 TTTAAAATGGATAATACTTTGAAATAG
1 TTTAAAATAAATAATA-TATAAAACAA
* * *
3098955 TTTAAAATACATAATATGTGAAA-AA
1 TTTAAAATAAATAATATATAAAACAA
* *
3098980 CTTAAAATAAATAATA-ATAAAATAA
1 TTTAAAATAAATAATATATAAAACAA
3099005 TTTAAAATAAATAATATAT
1 TTTAAAATAAATAATATAT
3099024 GAGACAAAAG
Statistics
Matches: 77, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
24 4 0.05
25 32 0.42
26 21 0.27
27 20 0.26
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.34
Consensus pattern (26 bp):
TTTAAAATAAATAATATATAAAACAA
Found at i:3098953 original size:43 final size:44
Alignment explanation
Indices: 3098869--3098953 Score: 109
Period size: 43 Copynumber: 1.9 Consensus size: 44
3098859 ATAAATGATA
*
3098869 TATATAAAAAAACCAATTCAAAATGAATAATAGTTTAAAATAAAT
1 TATATAAAAAAA-CAATTCAAAATGAATAATACTTTAAAATAAAT
* * * *
3098914 TATATATAAAAA-AATTTAAAATGGATAATACTTTGAAATA
1 TATATAAAAAAACAATTCAAAATGAATAATACTTTAAAATA
3098954 GTTTAAAATA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 24 0.69
45 11 0.31
ACGTcount: A:0.58, C:0.05, G:0.06, T:0.32
Consensus pattern (44 bp):
TATATAAAAAAACAATTCAAAATGAATAATACTTTAAAATAAAT
Found at i:3099013 original size:15 final size:16
Alignment explanation
Indices: 3098982--3099022 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
3098972 GTGAAAAACT
3098982 TAAAATAA-ATAATAA
1 TAAAATAATATAATAA
*
3098997 TAAAATAATTTAA-AA
1 TAAAATAATATAATAA
3099012 T-AAATAATATA
1 TAAAATAATATA
3099023 TGAGACAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 9 0.39
15 11 0.48
16 3 0.13
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
TAAAATAATATAATAA
Found at i:3105312 original size:14 final size:14
Alignment explanation
Indices: 3105293--3105324 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
3105283 AGGTCATTTA
3105293 GCCCAACCAAACGG
1 GCCCAACCAAACGG
*
3105307 GCCCAACCAAACTG
1 GCCCAACCAAACGG
3105321 GCCC
1 GCCC
3105325 GGTGATTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.31, C:0.47, G:0.19, T:0.03
Consensus pattern (14 bp):
GCCCAACCAAACGG
Found at i:3105980 original size:19 final size:21
Alignment explanation
Indices: 3105944--3105982 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
3105934 TGGACTAGGG
*
3105944 TTAGTTTTGGGTTATTGGGTT
1 TTAGTTTTGGGATATTGGGTT
3105965 TTAG-TTTGGGAT-TTGGGT
1 TTAGTTTTGGGATATTGGGT
3105983 CTGGTATGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 7 0.41
21 4 0.24
ACGTcount: A:0.10, C:0.00, G:0.36, T:0.54
Consensus pattern (21 bp):
TTAGTTTTGGGATATTGGGTT
Found at i:3115950 original size:2 final size:2
Alignment explanation
Indices: 3115943--3115970 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
3115933 AATCACTTCC
3115943 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3115971 TTATTGCATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3116550 original size:17 final size:17
Alignment explanation
Indices: 3116528--3116565 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
3116518 TATTTTATAA
*
3116528 TATAATTGTATTGTACT
1 TATAATTATATTGTACT
*
3116545 TATAATTATATTGTATT
1 TATAATTATATTGTACT
3116562 TATA
1 TATA
3116566 CTTGCTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.34, C:0.03, G:0.08, T:0.55
Consensus pattern (17 bp):
TATAATTATATTGTACT
Found at i:3125235 original size:16 final size:16
Alignment explanation
Indices: 3125197--3125239 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
3125187 TAGAGTGCAA
* *
3125197 ATATACATACATATAT
1 ATATAAATATATATAT
3125213 ATATAAATATATATAT
1 ATATAAATATATATAT
*
3125229 ATGTAAATATA
1 ATATAAATATA
3125240 ACAATAGAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (16 bp):
ATATAAATATATATAT
Found at i:3128802 original size:41 final size:42
Alignment explanation
Indices: 3128639--3128807 Score: 161
Period size: 41 Copynumber: 4.1 Consensus size: 42
3128629 ATTTAAACAG
* * * *
3128639 ATTCACCGGCATT-TGCCTGCTAGGCTTAAAGCCTG-ATT-C
1 ATTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTAC
* * * * **
3128678 AGTACACCGGCACTT-AGCCTGCTAGACATATAGTCTGAAATGT
1 A-TTCACCGGCA-TTAAGCCTGCTAGACGTAAAGTCTGAATTAC
*
3128721 A-TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAATTAC
1 ATTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTAC
* *
3128762 -TTCACCGGCATTAAGCCTGCTAGACGTAACGTCTGTATTAC
1 ATTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTAC
3128803 ATTCA
1 ATTCA
3128808 ATCACTTTAT
Statistics
Matches: 106, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
39 1 0.01
40 11 0.10
41 87 0.82
42 6 0.06
43 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (42 bp):
ATTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTAC
Found at i:3136334 original size:41 final size:42
Alignment explanation
Indices: 3136170--3136339 Score: 161
Period size: 41 Copynumber: 4.1 Consensus size: 42
3136160 ATTTAAACAG
** * * *
3136170 ATTCACCGGCATTTTGCCTGCTAGGCTTAAAGCCTG-ATT-C
1 ATTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTAC
* * * * **
3136210 AGTACACCGGCACTT-AGCCTGCTAGACATATAGTCTGAAATGT
1 A-TTCACCGGCA-TTAAGCCTGCTAGACGTAAAGTCTGAATTAC
*
3136253 A-TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAATTAC
1 ATTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTAC
* *
3136294 -TTCACCGGCATTAAGCCTGCTAGACGTAACGTCTGTATTAC
1 ATTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTAC
3136335 ATTCA
1 ATTCA
3136340 ATCACTTTAT
Statistics
Matches: 106, Mismatches: 17, Indels: 12
0.79 0.13 0.09
Matches are distributed among these distances:
40 3 0.03
41 94 0.89
42 8 0.08
43 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (42 bp):
ATTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTAC
Found at i:3146563 original size:29 final size:32
Alignment explanation
Indices: 3146508--3146576 Score: 99
Period size: 29 Copynumber: 2.2 Consensus size: 32
3146498 ATAAATAGTT
3146508 TTTTTTATTTTGTAAAAAGAATAAGGCTAATAG
1 TTTTTT-TTTTGTAAAAAGAATAAGGCTAATAG
3146541 TTTTTTTTTTG-AAAAA-AA-AAGGCTAATAG
1 TTTTTTTTTTGTAAAAAGAATAAGGCTAATAG
*
3146570 TTATTTT
1 TTTTTTT
3146577 AGTAGAGAGG
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
29 17 0.49
30 2 0.06
31 5 0.14
32 5 0.14
33 6 0.17
ACGTcount: A:0.38, C:0.03, G:0.13, T:0.46
Consensus pattern (32 bp):
TTTTTTTTTTGTAAAAAGAATAAGGCTAATAG
Found at i:3148348 original size:21 final size:22
Alignment explanation
Indices: 3148322--3148366 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
3148312 TGATATTACA
3148322 TTATTATTATTTT-CTTTCTAT
1 TTATTATTATTTTCCTTTCTAT
* *
3148343 TTATTATTTTTTTCCTTTTTAT
1 TTATTATTATTTTCCTTTCTAT
3148365 TT
1 TT
3148367 TATTTTCGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.16, C:0.09, G:0.00, T:0.76
Consensus pattern (22 bp):
TTATTATTATTTTCCTTTCTAT
Found at i:3149086 original size:15 final size:14
Alignment explanation
Indices: 3149060--3149095 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 14
3149050 TATATTTTTG
3149060 TTATACTTATATATA
1 TTATA-TTATATATA
3149075 TGTATATTATATATA
1 T-TATATTATATATA
3149090 TTATAT
1 TTATAT
3149096 AGTATTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 5 0.25
15 11 0.55
16 4 0.20
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.56
Consensus pattern (14 bp):
TTATATTATATATA
Found at i:3149548 original size:24 final size:24
Alignment explanation
Indices: 3149502--3149548 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
3149492 CTTTAATACT
* *
3149502 ATATCATTTTTATTTTTATTTTTC
1 ATATCATTCTTATGTTTATTTTTC
3149526 ATATCA-TCTTATGTTTATGTTTT
1 ATATCATTCTTATGTTTAT-TTTT
3149549 TCAAACTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.21, C:0.09, G:0.04, T:0.66
Consensus pattern (24 bp):
ATATCATTCTTATGTTTATTTTTC
Found at i:3149743 original size:25 final size:23
Alignment explanation
Indices: 3149694--3149743 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 23
3149684 CATCACCATT
*
3149694 ATTTTTATTATCATATTATTGTC
1 ATTTTTATTATCATATTATTCTC
3149717 ATTTTT-TTATCATTCATTATTTCTC
1 ATTTTTATTATCA-T-ATTA-TTCTC
3149742 AT
1 AT
3149744 CCTTTATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 6 0.26
23 7 0.30
24 4 0.17
25 6 0.26
ACGTcount: A:0.24, C:0.12, G:0.02, T:0.62
Consensus pattern (23 bp):
ATTTTTATTATCATATTATTCTC
Found at i:3149816 original size:3 final size:3
Alignment explanation
Indices: 3149808--3149859 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
3149798 AATTTTACTT
* * * *
3149808 TTA TTA TTA CTA CTA -TA TTA TTTA TTA TTA TCA TTA TCA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA
3149853 TTA TTA T
1 TTA TTA T
3149860 CATATTTATA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
2 2 0.05
3 37 0.88
4 3 0.07
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:3149862 original size:21 final size:21
Alignment explanation
Indices: 3149807--3149862 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
3149797 TAATTTTACT
*
3149807 TTTATTATTA-CTACTATATTA
1 TTTATTATTATC-ATTATATTA
3149828 TTTATTATTATCATTATCATTA
1 TTTATTATTATCATTAT-ATTA
3149850 -TTATTATTATCAT
1 TTTATTATTATCAT
3149863 ATTTATACTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 27 0.84
22 5 0.16
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (21 bp):
TTTATTATTATCATTATATTA
Found at i:3149868 original size:18 final size:18
Alignment explanation
Indices: 3149775--3149868 Score: 63
Period size: 18 Copynumber: 5.1 Consensus size: 18
3149765 ATTAACGTAC
3149775 ATTATTATTATCA-ATTT
1 ATTATTATTATCATATTT
* *
3149792 ACTATTAATT-TTACT-TTT
1 ATTATT-ATTATCA-TATTT
*
3149810 ATTATTACTA-C-TATATT
1 ATTATTATTATCATAT-TT
3149827 ATTTATTATTATCATTATCATT
1 A-TTATTATTATCA-TAT--TT
3149849 ATTATTATTATCATATTT
1 ATTATTATTATCATATTT
3149867 AT
1 AT
3149869 ACTTATATTT
Statistics
Matches: 60, Mismatches: 6, Indels: 21
0.69 0.07 0.24
Matches are distributed among these distances:
15 1 0.02
16 1 0.02
17 12 0.20
18 23 0.38
19 1 0.02
20 3 0.05
21 15 0.25
22 4 0.07
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTATTATTATCATATTT
Found at i:3150081 original size:3 final size:3
Alignment explanation
Indices: 3150073--3150123 Score: 54
Period size: 3 Copynumber: 17.3 Consensus size: 3
3150063 TATCTCTAAC
*
3150073 TAT TAT TAT TAT T-T TA- TAT ATAT TAT TAT CTA- TAT TAT TAT TAC
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT -TAT TAT TAT TAT TAT
3150117 TAT TAT T
1 TAT TAT T
3150124 CTTTATTGTC
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
2 6 0.15
3 30 0.73
4 5 0.12
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:3150098 original size:14 final size:15
Alignment explanation
Indices: 3150073--3150119 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
3150063 TATCTCTAAC
*
3150073 TATTATTATTATTTTA
1 TATTATTATTA-TCTA
3150089 TATATATTATTATCTA
1 TAT-TATTATTATCTA
3150105 TATTATTATTA-CTA
1 TATTATTATTATCTA
3150119 T
1 T
3150120 TATTCTTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 4 0.14
15 8 0.28
16 9 0.31
17 8 0.28
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (15 bp):
TATTATTATTATCTA
Found at i:3154666 original size:52 final size:52
Alignment explanation
Indices: 3154588--3154691 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
3154578 TATTCAAAAG
*
3154588 TTAGTTTATTCCAAGTCTCGATCAAGATGACAGATCCATTTTCTGTACTATC
1 TTAGTTTATTCCAAGTCTCGATCAAGATGACAGACCCATTTTCTGTACTATC
3154640 TTAGTTTATTCCAAGTCTCGATCAAGATGACAGACCCATTTTCTGTACTATC
1 TTAGTTTATTCCAAGTCTCGATCAAGATGACAGACCCATTTTCTGTACTATC
3154692 AATAGGATTA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.38
Consensus pattern (52 bp):
TTAGTTTATTCCAAGTCTCGATCAAGATGACAGACCCATTTTCTGTACTATC
Done.