Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 112 of 333
Found at i:36060237 original size:16 final size:18
Alignment explanation
Indices: 36060218--36060250 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
36060208 CATACGAGTT
36060218 CCAAAAC-ATA-ATAGTA
1 CCAAAACGATAGATAGTA
36060234 CCAAAACGATAGATAGT
1 CCAAAACGATAGATAGT
36060251 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (18 bp):
CCAAAACGATAGATAGTA
Found at i:36060881 original size:43 final size:43
Alignment explanation
Indices: 36060813--36061149 Score: 496
Period size: 43 Copynumber: 7.9 Consensus size: 43
36060803 TTTGAATTCA
* * * **
36060813 TTCACCGGCATT-TCGCCTGCTAGGCTCGAAGCCAAATATTAT
1 TTCACCAGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
* *
36060855 TTCACCGGCATTATAGCCTGCTAGGCTCGAGGCCTGATATTAT
1 TTCACCAGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
* * ** *
36060898 TTCATCGGCATTATAGCCTGCTAGGCTCGATTCCCAATATTAT
1 TTCACCAGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
* * *
36060941 TTCACCAGTATTATAGCCTGCTAGGCTCGAGGTCTGATATTAT
1 TTCACCAGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
36060984 TTCACCAGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
1 TTCACCAGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
*
36061027 TTCACCAGCATTATAGCCTGCTAGGCTCGAGGCTCGATATTAT
1 TTCACCAGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
36061070 TTCACCAGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
1 TTCACCAGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
* * *
36061113 TTCACCGGTATTATAGCCTGCTAGGCTCGAAGCCCGA
1 TTCACCAGCATTATAGCCTGCTAGGCTCGAGGCCCGA
36061150 ATTCATCATA
Statistics
Matches: 269, Mismatches: 25, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
42 12 0.04
43 257 0.96
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (43 bp):
TTCACCAGCATTATAGCCTGCTAGGCTCGAGGCCCGATATTAT
Found at i:36066366 original size:42 final size:42
Alignment explanation
Indices: 36066248--36066369 Score: 127
Period size: 42 Copynumber: 2.9 Consensus size: 42
36066238 AATCATACCA
* * ** *
36066248 ATGCCATATCCAAGATATGGTCTTACATGGGATCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* ** * * * *
36066290 ACGCCAATAGGCCAGCTGTGGTCTTTCACAAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATATCG
36066333 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCA
36066370 ACTAACCCTA
Statistics
Matches: 60, Mismatches: 19, Indels: 2
0.74 0.23 0.02
Matches are distributed among these distances:
42 30 0.50
43 30 0.50
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:36076680 original size:42 final size:42
Alignment explanation
Indices: 36076573--36076694 Score: 160
Period size: 43 Copynumber: 2.9 Consensus size: 42
36076563 AATCATACCA
* *
36076573 ATGCCATATCCCAGATATGGTCTTACGTAG-GATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTAC-AAGAAATCTCATATCG
*
36076615 ATGCCAATATCCCA-ACTGTGGTCTTACAAGAAATCTCATATCG
1 ATGCC-ATATCCCAGA-TATGGTCTTACAAGAAATCTCATATCG
36076658 ATGCCATATCCCAGATATGGTCTTACACA-AAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACA-AGAAATCTCA
36076695 ACTAACCCTA
Statistics
Matches: 71, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
42 35 0.49
43 36 0.51
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACAAGAAATCTCATATCG
Found at i:36080747 original size:93 final size:93
Alignment explanation
Indices: 36080588--36080760 Score: 312
Period size: 93 Copynumber: 1.9 Consensus size: 93
36080578 CGCCCATAAG
* *
36080588 CGAACTCGGACTCAACTCAACGAGCTTGGGCATTCGCATCCATAGGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
36080653 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
36080681 CGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTT-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
36080745 AACGAGTTCGGATGCC
65 AACGAGTTCGGATGCC
36080761 CAAATATCCT
Statistics
Matches: 77, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
92 2 0.03
93 75 0.97
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:36080753 original size:46 final size:46
Alignment explanation
Indices: 36080581--36080756 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
36080571 TGTAACCCGC
*
36080581 CCATAAGCGAACTCGGACTCAACTCAACGAGCTT-GGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCAT
* * *
36080627 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
36080677 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
36080720 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
36080757 TGCCCAAATA
Statistics
Matches: 108, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 4 0.04
46 60 0.56
47 29 0.27
48 1 0.01
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:36080775 original size:46 final size:46
Alignment explanation
Indices: 36080633--36080775 Score: 120
Period size: 46 Copynumber: 3.1 Consensus size: 46
36080623 GCATCCATAG
* *
36080633 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-TTC-A
1 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATATCCTA
* * *
36080681 -CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC----ATCCATAA
1 GTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATATCC-T-A
36080726 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCTA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCTA
36080772 GTGA
1 GTGA
36080776 CATGCCACTT
Statistics
Matches: 76, Mismatches: 8, Indels: 24
0.70 0.07 0.22
Matches are distributed among these distances:
42 2 0.03
44 4 0.05
45 1 0.01
46 33 0.43
47 29 0.38
48 4 0.05
49 3 0.04
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
GTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCTA
Found at i:36085493 original size:294 final size:291
Alignment explanation
Indices: 36084962--36085535 Score: 855
Period size: 294 Copynumber: 2.0 Consensus size: 291
36084952 TTGTGTTATA
*
36084962 TTAGTTCCACTAAAATAATCACACACAAAGTAGAAAAATTACCCTAAAAAATGTATTTCAAATGA
1 TTAGTTCCACTAAAATAATCACACACAAAGTAGAAAAATCACCCTAAAAAATGTATTTCAAATGA
* * **
36085027 GAAAGTACCTTAACTTCAAGATTGGGTGGTTCTTCGATTAACAACTTGGGTTGTGTGTATTCTTG
66 GAAAGTACCTTAACTTCAAGATTGGGCGGTTCCTCGATTAACAACTTGGGTTGTGTGTATTCCCG
* * * * *
36085092 AGCTTCCAACTCTAATAGTTCAAATCGTGCTAGTTGAACATAGTCCCTCATATTGTCTTTCACCA
131 AGCTTCCAACTCAAATAGTTCAAATCGTGCTAGTTGAACATAATCCATCAAATTGGCTTTCACCA
* * *
36085157 AAGCCATATTTTCCTTACCTTGTTGATCTTCTAATGGCTCAGACCTTAAGGTGTTTTCCAATGGG
196 AAGCCATATTTTCCTTACCTTGTTCATATTCTAATGGCTCAGACCATAAGGTGTTTTCCAATGGG
36085222 TCGTCTACAGAATTACACTCTTGGCATTCTG
261 TCGTCTACAGAATTACACTCTTGGCATTCTG
** *
36085253 TTAGTTCTTCTAAAATAATCACA-AGCAAAGTAGAACAATCA-CCTAAATAAATGTATTTCAAAT
1 TTAGTTCCACTAAAATAATCACACA-CAAAGTAGAAAAATCACCCTAAA-AAATGTATTTCAAAT
* * *
36085316 GAGAGGGAAGTACCTTAAGTTCAAGATTGGGCGGTTCCTCGATTGATAACTTGGGTTGTGTGTAT
64 GAGA---AAGTACCTTAACTTCAAGATTGGGCGGTTCCTCGATTAACAACTTGGGTTGTGTGTAT
* *
36085381 TCCCGAGCTTCCAACTCAAATGGTTCAAATCGTGCTGGTTGAACATAATCCATCAAATTGGCTTT
126 TCCCGAGCTTCCAACTCAAATAGTTCAAATCGTGCTAGTTGAACATAATCCATCAAATTGGCTTT
** * *
36085446 CGTCAAAGTCATATTTTCCTTACCTTGTTCATATTCTAATTGCTCAGACCATAAGGTGTTTTCCA
191 CACCAAAGCCATATTTTCCTTACCTTGTTCATATTCTAATGGCTCAGACCATAAGGTGTTTTCCA
*
36085511 ATGGGTCTTCTACAGAATTACACTC
256 ATGGGTCGTCTACAGAATTACACTC
36085536 AGATTTCATA
Statistics
Matches: 252, Mismatches: 26, Indels: 7
0.88 0.09 0.02
Matches are distributed among these distances:
290 7 0.03
291 54 0.21
294 191 0.76
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.34
Consensus pattern (291 bp):
TTAGTTCCACTAAAATAATCACACACAAAGTAGAAAAATCACCCTAAAAAATGTATTTCAAATGA
GAAAGTACCTTAACTTCAAGATTGGGCGGTTCCTCGATTAACAACTTGGGTTGTGTGTATTCCCG
AGCTTCCAACTCAAATAGTTCAAATCGTGCTAGTTGAACATAATCCATCAAATTGGCTTTCACCA
AAGCCATATTTTCCTTACCTTGTTCATATTCTAATGGCTCAGACCATAAGGTGTTTTCCAATGGG
TCGTCTACAGAATTACACTCTTGGCATTCTG
Found at i:36095229 original size:6 final size:6
Alignment explanation
Indices: 36095211--36095338 Score: 66
Period size: 6 Copynumber: 20.8 Consensus size: 6
36095201 AAGAAACATT
* *
36095211 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * * * *
36095260 ATCGGA ATCTGT ATCAGGTA A-CAGA ATTAAA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* * *
36095311 A-CAGA ATCAAA ATCAGA ACCAGT ATCAG
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAG
36095339 GCAACAGAAT
Statistics
Matches: 91, Mismatches: 20, Indels: 22
0.68 0.15 0.17
Matches are distributed among these distances:
5 6 0.07
6 73 0.80
7 9 0.10
8 3 0.03
ACGTcount: A:0.45, C:0.16, G:0.19, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:36095256 original size:31 final size:31
Alignment explanation
Indices: 36095220--36095362 Score: 178
Period size: 31 Copynumber: 4.6 Consensus size: 31
36095210 TATCAGAACT
* * * *
36095220 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
* * *
36095251 AGAATCAGAATCGGAATCTGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
36095282 AGAATTAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
* *
36095313 AGAATCAAAATCAGAACCAGTATCAGGCAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
36095344 AGAATCAAAAATCAAAATC
1 AGAATC-AAAATCAGAATC
36095363 TGAAAGCAAT
Statistics
Matches: 97, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
31 87 0.90
32 10 0.10
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:36095801 original size:27 final size:27
Alignment explanation
Indices: 36095771--36096207 Score: 215
Period size: 27 Copynumber: 16.2 Consensus size: 27
36095761 GGGCAAAATG
* *
36095771 GTAATTTTACCCCCCAAGGGTATCTCA
1 GTAATTCTACCCCACAAGGGTATCTCA
* * *
36095798 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCCACAAGGGTATCTCA
* * *
36095825 ATAATTCTACCCTACAGGGGTAT-T-A
1 GTAATTCTACCCCACAAGGGTATCTCA
** *
36095850 TGGTAATTCTACCTTACAAGGGTATTTCA
1 --GTAATTCTACCCCACAAGGGTATCTCA
* * * *
36095879 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCCACAAGGGTATCTCA
** * * *
36095906 GTAATTCTACCATACATGGGCATTTCA
1 GTAATTCTACCCCACAAGGGTATCTCA
** * *
36095933 GTAATTCTACCTTAC-AGGAGTATTTTA
1 GTAATTCTACCCCACAAGG-GTATCTCA
* * * *
36095960 GTAATTCTACCCTATAGGGGTATTTC-
1 GTAATTCTACCCCACAAGGGTATCTCA
* * * * *
36095986 GATAATTTTACCCTACAGGGGTATTTCG
1 G-TAATTCTACCCCACAAGGGTATCTCA
* *
36096014 GTAATT-TACCCTACATA-GGTAT-TCTG
1 GTAATTCTACCCCACA-AGGGTATCTC-A
* ** * *
36096040 GTATTTCTACCATACAGGGGTATTTCA
1 GTAATTCTACCCCACAAGGGTATCTCA
* * * *
36096067 GTAATTCTACCCCATAGGGGTATTTCG
1 GTAATTCTACCCCACAAGGGTATCTCA
* * * * *
36096094 GTAATTTTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCCACAAGGGTATCTCA
* * *
36096121 GTAATTCTACCCTACATGGGTAT-TCCG
1 GTAATTCTACCCCACAAGGGTATCT-CA
* * * * * *
36096148 GTATTTGTACTCTACAAGTGTATTTCA
1 GTAATTCTACCCCACAAGGGTATCTCA
* *
36096175 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCCACAAGGGTATCTCA
36096202 GTAATT
1 GTAATT
36096208 TCACAAATCA
Statistics
Matches: 344, Mismatches: 51, Indels: 30
0.81 0.12 0.07
Matches are distributed among these distances:
25 3 0.01
26 25 0.07
27 308 0.90
28 7 0.02
29 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCCACAAGGGTATCTCA
Found at i:36095830 original size:54 final size:54
Alignment explanation
Indices: 36095771--36096208 Score: 474
Period size: 54 Copynumber: 8.1 Consensus size: 54
36095761 GGGCAAAATG
** * *
36095771 GTAATTTTACCCCCCAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTTTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* * * * *
36095825 ATAATTCTACCCTACAGGGGTATTAT-GGTAATTCTACCTTACAAGGGTATTTCA
1 GTAATTTTACCCTACAGGGGTATT-TCAGTAATTCTACCCTACAGGGGTATTTCA
* * * * *
36095879 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCATACATGGGCATTTCA
1 GTAATTTTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* * * * *
36095933 GTAATTCTACCTTACAGGAGTATTTTAGTAATTCTACCCTATAGGGGTATTTC-
1 GTAATTTTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* ** *
36095986 GATAATTTTACCCTACAGGGGTATTTCGGTAATT-TACCCTACATAGGTA-TTCTG
1 G-TAATTTTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC-A
* * * *
36096040 GT-ATTTCTACCATACAGGGGTATTTCAGTAATTCTACCCCATAGGGGTATTTCG
1 GTAATTT-TACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* * * *
36096094 GTAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACATGGGTATTCCG
1 GTAATTTTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* * * *
36096148 GT-ATTTGTACTCTACAAGTGTATTTCAGTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTT-TACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
36096202 GTAATTT
1 GTAATTT
36096209 CACAAATCAG
Statistics
Matches: 325, Mismatches: 48, Indels: 21
0.82 0.12 0.05
Matches are distributed among these distances:
52 7 0.02
53 43 0.13
54 263 0.81
55 12 0.04
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (54 bp):
GTAATTTTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
Found at i:36095856 original size:81 final size:81
Alignment explanation
Indices: 36095770--36096207 Score: 481
Period size: 81 Copynumber: 5.4 Consensus size: 81
36095760 GGGGCAAAAT
** *
36095770 GGTAATTTTACCCCCCAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTAC
1 GGTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTAC
36095835 CCTACAGGGGTATTAT-
66 CCTACAGGGGTATT-TC
* * **
36095851 GGTAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
1 GGTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTAC
* * *
36095916 CATACATGGGCATTTC
66 CCTACAGGGGTATTTC
* * * * * * *
36095932 AGTAATTCTACCTTAC-AGGAGTATTTTAGTAATTCTACCCTATAGGGGTATTTCGATAATTTTA
1 GGTAATTTTACCCTACAAGG-GTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTA
36095996 CCCTACAGGGGTATTTC
65 CCCTACAGGGGTATTTC
* * * *
36096013 GGTAA-TTTACCCTACATA-GGTA-TTCTGGTATTTCTACCATACAGGGGTATTTCAGTAATTCT
1 GGTAATTTTACCCTACA-AGGGTATTTC-AGTAATTCTACCCTACAGGGGTATTTCAATAATTCT
* *
36096075 ACCCCATAGGGGTATTTC
64 ACCCTACAGGGGTATTTC
* * * * ** * *
36096093 GGTAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACATGGGTATTCCGGTATTTGTAC
1 GGTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTAC
* * *
36096158 TCTACAAGTGTATTTC
66 CCTACAGGGGTATTTC
* *
36096174 AGTAATTCTACCCTACAAGGGTATTTCAGTAATT
1 GGTAATTTTACCCTACAAGGGTATTTCAGTAATT
36096208 TCACAAATCA
Statistics
Matches: 301, Mismatches: 48, Indels: 16
0.82 0.13 0.04
Matches are distributed among these distances:
79 2 0.01
80 65 0.22
81 230 0.76
82 4 0.01
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (81 bp):
GGTAATTTTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTAC
CCTACAGGGGTATTTC
Found at i:36096250 original size:54 final size:54
Alignment explanation
Indices: 36096189--36096532 Score: 214
Period size: 54 Copynumber: 6.4 Consensus size: 54
36096179 TTCTACCCTA
36096189 CAAGGGTATTTCAGTAATTTCACAAATC-AGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCAGTAATTTCACAAATCGA-GGGTATTTTGGTAATTTTACAAAC
* ** * *** *
36096243 CAGGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTATAAAC
1 CAAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTTGGTAATTTTACAAAC
*** * *** ** *
36096297 CAAGGGTATTTCAGTAATTTTGTAAATCGATGGTAAAATGGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTTGGTAATTTTACAAAC
* ** * ** * ** *
36096351 CGAGGGTAAAAT-GGTAA-TTCTATCTTA-C-AGAAGTATTTCAGTAATTTTACAAAT
1 CAAGGGT-ATTTCAGTAATTTC-A-CAAATCGAG-GGTATTTTGGTAATTTTACAAAC
* ** * * *
36096405 CGAGGGTATTTCAGTAATTTTGCAAA-CTGAGGGTATTTCGATAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTCACAAATC-GAGGGTATTTTGGTAATTTTACAAAC
* * * * * **
36096459 CAAGGATATTTCAGTAATTTTATAAATCGGGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTTGGTAATTTTACAAAC
*
36096513 CGAGGGTATTTCAGTAATTT
1 CAAGGGTATTTCAGTAATTT
36096533 GGTAAACTAA
Statistics
Matches: 221, Mismatches: 59, Indels: 20
0.74 0.20 0.07
Matches are distributed among these distances:
53 8 0.04
54 204 0.92
55 9 0.04
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.38
Consensus pattern (54 bp):
CAAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTTGGTAATTTTACAAAC
Found at i:36096252 original size:81 final size:80
Alignment explanation
Indices: 36095770--36096261 Score: 433
Period size: 81 Copynumber: 6.1 Consensus size: 80
36095760 GGGGCAAAAT
* ** * * ** *
36095770 GGTAATTTTACCCCCCAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCATACAGGGGTATTTCGGTAATTTTA-
*
36095835 CCTACAGGGGTATTAT-
65 CATACAGGGGTATT-TC
* * *
36095851 GGTAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCATACAGGGGTATTTCGGTAATTTTA-
* *
36095916 CATACATGGGCATTTC
65 CATACAGGGGTATTTC
* * * * * *
36095932 AGTAATTCTACCTTAC-AGGAGTATTTTAGTAATTCTACCCTATAGGGGTATTTCGATAATTTTA
1 GGTAATTCTACCCTACAAGG-GTATTTCAGTAATTCTACCATACAGGGGTATTTCGGTAATTTTA
*
36095996 CCCTACAGGGGTATTTC
65 -CATACAGGGGTATTTC
* * * *
36096013 GGTAATT-TACCCTACATA-GGTA-TTCTGGTATTTCTACCATACAGGGGTATTTCAGTAATTCT
1 GGTAATTCTACCCTACA-AGGGTATTTC-AGTAATTCTACCATACAGGGGTATTTCGGTAATTTT
** *
36096075 ACCCCATAGGGGTATTTC
64 A-CATACAGGGGTATTTC
* * * * * *
36096093 GGTAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACATGGGTATTCCGGT-ATTTGTA
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCATACAGGGGTATTTCGGTAATTT-TA
* * *
36096157 CTCTACAAGTGTATTTC
65 C-ATACAGGGGTATTTC
* * *
36096174 AGTAATTCTACCCTACAAGGGTATTTCAGTAATT-T-CACAAATCAGGGGTATTTTGGTAATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC-CATA-CAGGGGTATTTCGGTAATTTT
* *
36096237 ACAAACCAGGGGTATTTT
64 ACATA-CAGGGGTATTTC
36096255 GGTAATT
1 GGTAATT
36096262 TTATTGATCG
Statistics
Matches: 341, Mismatches: 56, Indels: 28
0.80 0.13 0.07
Matches are distributed among these distances:
79 3 0.01
80 74 0.22
81 256 0.75
82 8 0.02
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.36
Consensus pattern (80 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCATACAGGGGTATTTCGGTAATTTTAC
ATACAGGGGTATTTC
Found at i:36096322 original size:27 final size:27
Alignment explanation
Indices: 36096189--36096322 Score: 133
Period size: 27 Copynumber: 5.0 Consensus size: 27
36096179 TTCTACCCTA
** * * *
36096189 CAAGGGTATTTCAGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
36096216 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* ** *
36096243 CAGGGGTATTTTGGTAATTTTATTGAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
36096270 CGAGGGTATTTTGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
** *
36096297 CAAGGGTATTTCAGTAATTTTGTAAA
1 CAAGGGTATTTTGGTAATTTTATAAA
36096323 TCGATGGTAA
Statistics
Matches: 89, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 89 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:36096331 original size:27 final size:26
Alignment explanation
Indices: 36096219--36096538 Score: 128
Period size: 27 Copynumber: 11.8 Consensus size: 26
36096209 CACAAATCAG
** *
36096219 GGGTATTTTGGTAATTTTACAAA-CCA
1 GGGTA-TTTGGTAATTTTGTAAATCGA
* **
36096245 GGGGTATTTTGGTAATTTTATTGATCGA
1 -GGGTA-TTTGGTAATTTTGTAAATCGA
* * *
36096273 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTA-TTTGGTAATTTTGTAAATCGA
*
36096300 GGGTATTTCAGTAATTTTGTAAATCGA
1 GGGTATTT-GGTAATTTTGTAAATCGA
* **
36096327 TGGTAAAATGGTAATTTTGTAAATCGA
1 GGGT-ATTTGGTAATTTTGTAAATCGA
** * *
36096354 GGGTAAAATGGTAATTCTATCT-TA-C-A
1 GGGT-ATTTGGTAATT-T-TGTAAATCGA
* * **
36096380 GAAGTATTTCAGTAATTTTACAAATCGA
1 G-GGTATTT-GGTAATTTTGTAAATCGA
* *
36096408 GGGTATTTCAGTAATTTTGCAAA-CTGA
1 GGGTATTT-GGTAATTTTGTAAATC-GA
* ** *
36096435 GGGTATTTCGATAATTTTACAAATCAA
1 GGGTATTT-GGTAATTTTGTAAATCGA
* * * *
36096462 GGATATTTCAGTAATTTTATAAATCGG
1 GGGTATTT-GGTAATTTTGTAAATCGA
** *
36096489 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTA-TTTGGTAATTTTGTAAATCGA
* *
36096516 GGGTATTTCAGTAATTTGGTAAA
1 GGGTATTT-GGTAATTTTGTAAA
36096539 CTAAAGTATT
Statistics
Matches: 231, Mismatches: 48, Indels: 28
0.75 0.16 0.09
Matches are distributed among these distances:
25 1 0.00
26 13 0.06
27 203 0.88
28 12 0.05
29 2 0.01
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (26 bp):
GGGTATTTGGTAATTTTGTAAATCGA
Found at i:36096531 original size:81 final size:80
Alignment explanation
Indices: 36096191--36096532 Score: 239
Period size: 81 Copynumber: 4.2 Consensus size: 80
36096181 CTACCCTACA
* * * ** *
36096191 AGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAA-CCAGGGGTATTTT
1 AGGGTATTTCAGTAATTTTACAAATCAAGGATATTTCAGTAATTTTACAAATCGA-GGGTA-TTT
**
36096255 GGTAATTTTA-TTGATCG
64 GGTAATTTTACAAG-TCG
** * * * ** * **
36096272 AGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTCAGTAATTTTGTAAATCGATGGTAAAATG
1 AGGGTATTTCAGTAATTTTACAAATCAAGGATATTTCAGTAATTTTACAAATCGAGGGT-ATTTG
** *
36096337 GTAATTTTGTAAATCG
65 GTAATTTTACAAGTCG
** * * ** *
36096353 AGGGTAAAAT-GGTAATTCTATCTTA-C-AGAAGTATTTCAGTAATTTTACAAATCGAGGGTATT
1 AGGGT-ATTTCAGTAATTTTA-CAAATCAAGGA-TATTTCAGTAATTTTACAAATCGAGGGTATT
* * *
36096415 TCAGTAATTTTGCAA-ACTG
63 T-GGTAATTTTACAAGTC-G
* *
36096434 AGGGTATTTC-GATAATTTTACAAATCAAGGATATTTCAGTAATTTTATAAATCGGGGGTACTTT
1 AGGGTATTTCAG-TAATTTTACAAATCAAGGATATTTCAGTAATTTTACAAATCGAGGGTA-TTT
36096498 GGTAATTTTACAAGTCG
64 GGTAATTTTACAAGTCG
36096515 AGGGTATTTCAGTAATTT
1 AGGGTATTTCAGTAATTT
36096533 GGTAAACTAA
Statistics
Matches: 201, Mismatches: 45, Indels: 30
0.73 0.16 0.11
Matches are distributed among these distances:
80 10 0.05
81 177 0.88
82 14 0.07
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (80 bp):
AGGGTATTTCAGTAATTTTACAAATCAAGGATATTTCAGTAATTTTACAAATCGAGGGTATTTGG
TAATTTTACAAGTCG
Found at i:36098547 original size:31 final size:31
Alignment explanation
Indices: 36098494--36098573 Score: 115
Period size: 31 Copynumber: 2.5 Consensus size: 31
36098484 TGTCAGAACT
36098494 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
* * *
36098525 AGAATCAGAATCGGAATTAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTATCAGGTAAC
*
36098556 AGAATAAAAAATCAGAAT
1 AGAAT-CAAAATCAGAAT
36098574 GTGAATGCAA
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
31 33 0.79
32 9 0.21
ACGTcount: A:0.50, C:0.12, G:0.17, T:0.20
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTATCAGGTAAC
Found at i:36099039 original size:27 final size:27
Alignment explanation
Indices: 36098981--36099364 Score: 448
Period size: 27 Copynumber: 14.3 Consensus size: 27
36098971 GGGGAAAAAT
* * * *
36098981 GGTAATTTTACCC-CCAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36099007 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * *
36099034 AATAATTCTACCCTTCAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
36099061 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
36099088 AGTAATTCTACCCTACACGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
36099115 GGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
36099142 AGTAATTGTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
36099169 GATAATTCTACCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36099196 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36099223 GGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36099250 GGTAATTCTACCCTACATGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
36099276 TGGTATTTCTACCCTACAAGTGTATTTC
1 -GGTAATTCTACCCTACAGGGGTATTTC
* *
36099304 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * * *
36099331 GATAATTCTATCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
36099358 GGTAATT
1 GGTAATT
36099365 TCACAAATCA
Statistics
Matches: 304, Mismatches: 51, Indels: 5
0.84 0.14 0.01
Matches are distributed among these distances:
26 15 0.05
27 286 0.94
28 3 0.01
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:36099420 original size:27 final size:27
Alignment explanation
Indices: 36099347--36099461 Score: 122
Period size: 27 Copynumber: 4.3 Consensus size: 27
36099337 TCTATCCTAT
***
36099347 AAGGGTATTTTGGTAATTTCACAAATC
1 AAGGGTATTTTGGTAATTTTGTAAATC
* *
36099374 AGGGGTATTTTGGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTGTAAATC
*
36099401 AAGGGTATTTTAGTAATTTTGTAAATC
1 AAGGGTATTTTGGTAATTTTGTAAATC
*** * *
36099428 AAGGGTAAAATGGTAATTCTATAAATC
1 AAGGGTATTTTGGTAATTTTGTAAATC
*
36099455 GAGGGTA
1 AAGGGTA
36099462 AAATGGTAAT
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.37
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTGTAAATC
Found at i:36099462 original size:27 final size:27
Alignment explanation
Indices: 36099413--36099476 Score: 101
Period size: 27 Copynumber: 2.4 Consensus size: 27
36099403 GGGTATTTTA
* *
36099413 GTAATTTTGTAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCAAGGGTAAAATG
*
36099440 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCAAGGGTAAAATG
36099467 GTAATTCTAT
1 GTAATTCTAT
36099477 CTTACAAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.39, C:0.06, G:0.20, T:0.34
Consensus pattern (27 bp):
GTAATTCTATAAATCAAGGGTAAAATG
Found at i:36099517 original size:27 final size:27
Alignment explanation
Indices: 36099487--36099608 Score: 138
Period size: 27 Copynumber: 4.5 Consensus size: 27
36099477 CTTACAAAAA
* *
36099487 TATTTCAGTAATTTTGCAAATTGAGGG
1 TATTTCAGTAATTTTACAAATCGAGGG
* * *
36099514 TATTTCGGTAATTTTACAAATTGAGGA
1 TATTTCAGTAATTTTACAAATCGAGGG
* *
36099541 TATTTCAGTAATTTTATAAATCGGGGG
1 TATTTCAGTAATTTTACAAATCGAGGG
* * *
36099568 TACTTT-GGTAGTTTTACAAGTCGAGGG
1 TA-TTTCAGTAATTTTACAAATCGAGGG
36099595 TATTTCAGTAATTT
1 TATTTCAGTAATTT
36099609 GGTAAACTAA
Statistics
Matches: 78, Mismatches: 15, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
26 3 0.04
27 72 0.92
28 3 0.04
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (27 bp):
TATTTCAGTAATTTTACAAATCGAGGG
Found at i:36099544 original size:54 final size:54
Alignment explanation
Indices: 36099486--36099608 Score: 158
Period size: 54 Copynumber: 2.3 Consensus size: 54
36099476 TCTTACAAAA
* * *
36099486 ATATTTCAGTAATTTTGCAAATTGAGGGTA-TTTCGGTAATTTTACAAATTGAGG
1 ATATTTCAGTAATTTTACAAATCGAGGGTACTTT-GGTAATTTTACAAATCGAGG
* * * *
36099540 ATATTTCAGTAATTTTATAAATCGGGGGTACTTTGGTAGTTTTACAAGTCGAGG
1 ATATTTCAGTAATTTTACAAATCGAGGGTACTTTGGTAATTTTACAAATCGAGG
*
36099594 GTATTTCAGTAATTT
1 ATATTTCAGTAATTT
36099609 GGTAAACTAA
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
54 57 0.95
55 3 0.05
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.41
Consensus pattern (54 bp):
ATATTTCAGTAATTTTACAAATCGAGGGTACTTTGGTAATTTTACAAATCGAGG
Found at i:36104745 original size:11 final size:11
Alignment explanation
Indices: 36104731--36104756 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
36104721 CCATCAAGCA
36104731 TAACATAAGTG
1 TAACATAAGTG
36104742 TAACATAAGTG
1 TAACATAAGTG
36104753 TAAC
1 TAAC
36104757 TCAATTCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.27
Consensus pattern (11 bp):
TAACATAAGTG
Found at i:36121022 original size:39 final size:38
Alignment explanation
Indices: 36120979--36121126 Score: 170
Period size: 39 Copynumber: 3.8 Consensus size: 38
36120969 ACCAGCTCGA
* * *
36120979 AGCCTGCGAGACTTTAGCCCGGACGTAATTCCAGCATAT
1 AGCCTGCG-GACTTAAGTCCGGACATAATTCCAGCATAT
* * * *
36121018 AGCCTACGGGCCTTAAGTCCGAACATAATTCCAACATAT
1 AGCCTGC-GGACTTAAGTCCGGACATAATTCCAGCATAT
*
36121057 AGCCTGCGGACCTTAAGTCCGGACATAATCCCAGCATAT
1 AGCCTGCGGA-CTTAAGTCCGGACATAATTCCAGCATAT
* *
36121096 AGCCTGCGGACCTTAAGTCTGGATATAATTC
1 AGCCTGCGGA-CTTAAGTCCGGACATAATTC
36121127 ATCACTGAGT
Statistics
Matches: 92, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
38 2 0.02
39 89 0.97
40 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
AGCCTGCGGACTTAAGTCCGGACATAATTCCAGCATAT
Found at i:36126742 original size:29 final size:27
Alignment explanation
Indices: 36126724--36126793 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
36126714 ATATTAAGTC
36126724 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
36126751 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
36126779 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
36126794 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:36126787 original size:28 final size:28
Alignment explanation
Indices: 36126724--36126821 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
36126714 ATATTAAGTC
*
36126724 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
36126751 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
36126779 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
36126808 CGCACACTTAGTGC
1 CGCACACTTAGTGC
36126822 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:36135475 original size:39 final size:38
Alignment explanation
Indices: 36135432--36135562 Score: 156
Period size: 39 Copynumber: 3.4 Consensus size: 38
36135422 ACCAGCTCGA
* *
36135432 AGCCTGCGGGA-CTTTAGCCCAGACGTAATTCCAGCATAT
1 AGCCTGC-GGACCTTAAGCCC-GACATAATTCCAGCATAT
* *
36135471 AGCCTGCGGACCTTAAGTCCGAACATAATTCCAACATAT
1 AGCCTGCGGACCTTAAGCCCG-ACATAATTCCAGCATAT
* *
36135510 AGCCTACAGACCTTAAGCCCGGACATAATTCCAGCATAT
1 AGCCTGCGGACCTTAAGCCC-GACATAATTCCAGCATAT
*
36135549 AGCCTGCGAACCTT
1 AGCCTGCGGACCTT
36135563 TAGTCCGGAT
Statistics
Matches: 78, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
38 4 0.05
39 73 0.94
40 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (38 bp):
AGCCTGCGGACCTTAAGCCCGACATAATTCCAGCATAT
Found at i:36135571 original size:39 final size:39
Alignment explanation
Indices: 36135447--36135579 Score: 160
Period size: 39 Copynumber: 3.4 Consensus size: 39
36135437 GCGGGACTTT
* * *
36135447 AGCCCAGACGTAATTCCAGCATATAGCCTGCGGACCTTA
1 AGCCCGGACATAATTCCAGCATATAGCCTGCGAACCTTA
* * * *
36135486 AGTCCGAACATAATTCCAACATATAGCCTAC-AGACCTTA
1 AGCCCGGACATAATTCCAGCATATAGCCTGCGA-ACCTTA
*
36135525 AGCCCGGACATAATTCCAGCATATAGCCTGCGAACCTTT
1 AGCCCGGACATAATTCCAGCATATAGCCTGCGAACCTTA
* *
36135564 AGTCCGGATATAATTC
1 AGCCCGGACATAATTC
36135580 ATCACTAAGT
Statistics
Matches: 78, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
39 77 0.99
40 1 0.01
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.23
Consensus pattern (39 bp):
AGCCCGGACATAATTCCAGCATATAGCCTGCGAACCTTA
Found at i:36146249 original size:45 final size:44
Alignment explanation
Indices: 36146107--36146276 Score: 190
Period size: 45 Copynumber: 3.9 Consensus size: 44
36146097 ATATCATACA
* * * *
36146107 ATGCCAATGTCCCAGACGTGGTCTTACATGCT-A-TCTTATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-TAACACATATATCG
* *
36146150 ATGCCACTGTCCCAGACAGGGTCTTACACG-AATCA-A-ATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAA-CACATATATCG
36146191 ATGCCAATGTCCCAGACATGGTCTTACACGTAACCACATATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAA-CACATATATCG
* *
36146236 ATGCCAATGTCCCAGACGTGGTCTTACACGAGAACACATAT
1 ATGCCAATGTCCCAGACATGGTCTTACACG-TAACACATAT
36146277 CAAAAATTCT
Statistics
Matches: 108, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
41 30 0.28
42 8 0.07
43 27 0.25
44 3 0.03
45 38 0.35
46 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAACACATATATCG
Found at i:36146259 original size:86 final size:84
Alignment explanation
Indices: 36146102--36146266 Score: 226
Period size: 86 Copynumber: 1.9 Consensus size: 84
36146092 CACATATATC
* * * * *
36146102 ATACAATGCCAATGTCCCAGACGTGGTCTTACATGCTATCTTATATCGATGCCACTGTCCCAGAC
1 ATACAATGCCAATGTCCCAGACATGGTCTTACACGCTAACATATATCGATGCCAATGTCCCAGAC
36146167 AGGGTCTTACACGAATCAA
66 AGGGTCTTACACGAATCAA
*
36146186 ATACGATGCCAATGTCCCAGACATGGTCTTACACG-TAACCACATATATCGATGCCAATGTCCCA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACACGCT-A--ACATATATCGATGCCAATGTCCCA
36146250 GAC-GTGGTCTTACACGA
63 GACAG-GGTCTTACACGA
36146267 GAACACATAT
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
83 1 0.01
84 33 0.46
85 1 0.01
86 36 0.51
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (84 bp):
ATACAATGCCAATGTCCCAGACATGGTCTTACACGCTAACATATATCGATGCCAATGTCCCAGAC
AGGGTCTTACACGAATCAA
Found at i:36167789 original size:40 final size:39
Alignment explanation
Indices: 36167717--36167799 Score: 94
Period size: 40 Copynumber: 2.1 Consensus size: 39
36167707 TTAATATATA
**
36167717 TAGCCGAAGCTATCTCAAATTGCACACCAAGTGCCACTTT
1 TAGCCGAAGCTATCTCAAACCGCACACCAAGTGCCA-TTT
* * * * *
36167757 TAGCCGAAGCTATTTCGAACCGCATACTAAGTGTCATTT
1 TAGCCGAAGCTATCTCAAACCGCACACCAAGTGCCATTT
36167796 TAGC
1 TAGC
36167800 TGATAAGTCA
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
39 7 0.19
40 29 0.81
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.28
Consensus pattern (39 bp):
TAGCCGAAGCTATCTCAAACCGCACACCAAGTGCCATTT
Found at i:36172220 original size:27 final size:27
Alignment explanation
Indices: 36172190--36172367 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
36172180 ATATCGAGTC
* *
36172190 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
36172217 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
36172244 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
36172272 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
36172299 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
36172326 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
*
36172353 TGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36172368 GTACAATTTA
Statistics
Matches: 128, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:36172329 original size:82 final size:81
Alignment explanation
Indices: 36172211--36172366 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
36172201 TGCTATATAA
* *
36172211 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
36172276 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** * *
36172293 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATTGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
36172357 CACTTAGTGC
65 CACTTAGTGC
36172367 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:36179111 original size:17 final size:17
Alignment explanation
Indices: 36179089--36179124 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
36179079 GTGATTTTTC
36179089 AATTCAATCTCGATTCT
1 AATTCAATCTCGATTCT
36179106 AATTCAATCTCGATTCT
1 AATTCAATCTCGATTCT
36179123 AA
1 AA
36179125 CTTTTTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.33, C:0.22, G:0.06, T:0.39
Consensus pattern (17 bp):
AATTCAATCTCGATTCT
Found at i:36181045 original size:19 final size:19
Alignment explanation
Indices: 36181018--36181110 Score: 68
Period size: 19 Copynumber: 5.1 Consensus size: 19
36181008 TTATTCTAGC
*
36181018 AACTAAATTAACTAAGATG
1 AACTTAATTAACTAAGATG
*
36181037 AACTTAATTAACGAAGATG
1 AACTTAATTAACTAAGATG
* * * *
36181056 -A-TTAATTTATTCCAG--C
1 AACTTAATTAACT-AAGATG
*
36181072 AACTTAATTAACTAAGATA
1 AACTTAATTAACTAAGATG
* *
36181091 AACTCAAATAACTAAGATG
1 AACTTAATTAACTAAGATG
36181110 A
1 A
36181111 GTAATTTATT
Statistics
Matches: 55, Mismatches: 14, Indels: 10
0.70 0.18 0.13
Matches are distributed among these distances:
17 10 0.18
18 11 0.20
19 34 0.62
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.29
Consensus pattern (19 bp):
AACTTAATTAACTAAGATG
Found at i:36181073 original size:54 final size:54
Alignment explanation
Indices: 36181008--36181136 Score: 195
Period size: 54 Copynumber: 2.4 Consensus size: 54
36180998 CAACAATAAA
* * * * * *
36181008 TTATTCTAGCAACTAAATTAACTAAGATGAACTTAATTAACGAAGATGATTAAT
1 TTATTCCAGCAACTTAATTAACTAAGATAAACTCAAATAACGAAGATGAGTAAT
*
36181062 TTATTCCAGCAACTTAATTAACTAAGATAAACTCAAATAACTAAGATGAGTAAT
1 TTATTCCAGCAACTTAATTAACTAAGATAAACTCAAATAACGAAGATGAGTAAT
36181116 TTATTCCAGCAACTTAATTAA
1 TTATTCCAGCAACTTAATTAA
36181137 TTAAACTAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 68 1.00
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.33
Consensus pattern (54 bp):
TTATTCCAGCAACTTAATTAACTAAGATAAACTCAAATAACGAAGATGAGTAAT
Found at i:36183278 original size:18 final size:18
Alignment explanation
Indices: 36183255--36183292 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
36183245 TGGCCCTTTG
36183255 CAATAACAGTAAACAATA
1 CAATAACAGTAAACAATA
*
36183273 CAATAACAGTAAACAGTA
1 CAATAACAGTAAACAATA
36183291 CA
1 CA
36183293 GAAACTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.58, C:0.18, G:0.08, T:0.16
Consensus pattern (18 bp):
CAATAACAGTAAACAATA
Found at i:36183807 original size:37 final size:37
Alignment explanation
Indices: 36183746--36183824 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
36183736 TTATTACGAA
* * *
36183746 GTCTTACCCAGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
* *
36183783 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
36183820 GTCTT
1 GTCTT
36183825 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
Found at i:36184102 original size:47 final size:47
Alignment explanation
Indices: 36183942--36184448 Score: 888
Period size: 47 Copynumber: 10.7 Consensus size: 47
36183932 GCCCTTCGGG
*
36183942 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATACATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCACATAT--ATAC
* *
36183992 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCATATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATC--ACATATATAC
36184041 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
36184088 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
36184135 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
36184182 ACTTTCACATTCATCAAATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
36184229 ACTTTCACATTCATCACATCGGCCATCAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
36184276 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
36184323 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
36184370 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
36184417 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
36184449 ATACTATCAT
Statistics
Matches: 444, Mismatches: 11, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
47 362 0.82
49 73 0.16
50 4 0.01
51 5 0.01
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:36184316 original size:22 final size:23
Alignment explanation
Indices: 36184283--36184363 Score: 67
Period size: 22 Copynumber: 3.5 Consensus size: 23
36184273 TACACTTTCA
36184283 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
**** ***
36184306 CATT-ATCACATATATACACTTTCA
1 CATTCATCACAT-CGGCCA-TTAGG
36184330 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
36184353 CATT-ATCACAT
1 CATTCATCACAT
36184364 ATATACACTT
Statistics
Matches: 41, Mismatches: 14, Indels: 7
0.66 0.23 0.11
Matches are distributed among these distances:
22 14 0.34
23 12 0.29
24 8 0.20
25 7 0.17
ACGTcount: A:0.31, C:0.28, G:0.10, T:0.31
Consensus pattern (23 bp):
CATTCATCACATCGGCCATTAGG
Found at i:36184339 original size:25 final size:24
Alignment explanation
Indices: 36184120--36184388 Score: 80
Period size: 25 Copynumber: 11.4 Consensus size: 24
36184110 CCATTAGGCC
36184120 TTATCACATATATACACTTTCACA
1 TTATCACATATATACACTTTCACA
**** ***
36184144 TTCATCACAT-CGGCCA-TTAGGCA
1 TT-ATCACATATATACACTTTCACA
36184167 TTATCACATATATACACTTTCACA
1 TTATCACATATATACACTTTCACA
*** * *
36184191 TTCATCA-A-ATCGGC-CATT-AGGCC
1 TT-ATCACATATATACACTTTCA--CA
36184214 TTATCACATATATACACTTTCACA
1 TTATCACATATATACACTTTCACA
*** *
36184238 TTCATCAC--ATCGGC-C-ATCAGGCA
1 TT-ATCACATATATACACTTTCA--CA
36184261 TTATCACATATATACACTTTCACA
1 TTATCACATATATACACTTTCACA
**** ***
36184285 TTCATCACAT-CGGCCA-TTAGGCA
1 TT-ATCACATATATACACTTTCACA
36184308 TTATCACATATATACACTTTCACA
1 TTATCACATATATACACTTTCACA
**** ***
36184332 TTCATCACAT-CGGCCA-TTAGGCA
1 TT-ATCACATATATACACTTTCACA
36184355 TTATCACATATATACACTTTCACA
1 TTATCACATATATACACTTTCACA
36184379 TTCATCACAT
1 TT-ATCACAT
36184389 CGGCCATTAG
Statistics
Matches: 161, Mismatches: 60, Indels: 47
0.60 0.22 0.18
Matches are distributed among these distances:
21 4 0.02
22 34 0.21
23 38 0.24
24 40 0.25
25 41 0.25
26 4 0.02
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.32
Consensus pattern (24 bp):
TTATCACATATATACACTTTCACA
Found at i:36188263 original size:40 final size:40
Alignment explanation
Indices: 36187962--36188317 Score: 371
Period size: 40 Copynumber: 8.9 Consensus size: 40
36187952 CGAATACACG
* * * *
36187962 TCACCAGCATGATTACTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * ** *
36188002 ACACCAGCATGAATGCTCTTTGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * *
36188042 TCACTAGCACGAATGCTCTTCGGAACTTAGCTCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
*
36188082 TCACTAGCACGAATGCTCCTT-GGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCT-CTTCGGGACTTAGCCCGGATATA
* *
36188122 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* *
36188162 TCACTAGCATGAATGCTCTTCGGGACTTAGCCAGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* *
36188202 TCGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* * ** * *
36188242 GTAACTCGCACCAATGC-CTTC-GGATCTTAGTCCGGATATGG
1 -TCACTAGCATGAATGCTCTTCGGGA-CTTAGCCCGGATAT-A
* *
36188283 TCACTTAGCA-CAAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-TAGCATGAATGCTCTTCGGGACTTAGCCCGGA
36188318 CATCATTCAA
Statistics
Matches: 268, Mismatches: 41, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
39 6 0.02
40 241 0.90
41 21 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:36188666 original size:29 final size:29
Alignment explanation
Indices: 36188627--36188705 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
36188617 CTTAATAATC
*
36188627 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
36188657 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
36188686 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
36188706 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:36190662 original size:37 final size:37
Alignment explanation
Indices: 36190612--36190690 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
36190602 TTATTACGAA
* *
36190612 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACA-AACTCCCCACACGAAGTCATCGG
*
36190649 GTCTTACCCGGACAAACTCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAACTCCCCACACGAAGTCATCGG
36190686 GTCTT
1 GTCTT
36190691 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 2 0.05
37 36 0.95
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAACTCCCCACACGAAGTCATCGG
Found at i:36190968 original size:47 final size:47
Alignment explanation
Indices: 36190808--36191359 Score: 973
Period size: 47 Copynumber: 11.7 Consensus size: 47
36190798 GCCCTTCGGG
*
36190808 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
36190858 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
36190907 ACTTTCACATTCATCACATCGGCCATTAGGCCGTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
36190954 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
36191001 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
36191048 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
36191095 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
36191142 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
36191189 ACTTTCACATTCATCACATCGGCCATCAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
36191236 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
36191283 ACTTTCACATTCATCACATCGGCCATTAGGCC-TAT-ACACATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
36191328 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
36191360 ATACTATCAT
Statistics
Matches: 491, Mismatches: 11, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
45 41 0.08
46 3 0.01
47 360 0.73
49 83 0.17
50 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:36191320 original size:37 final size:40
Alignment explanation
Indices: 36191277--36191357 Score: 117
Period size: 45 Copynumber: 1.9 Consensus size: 40
36191267 CTTATCACAT
36191277 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATACAC
1 ATATACACTTTCACATTCATCACATCGGCCATTAGG-----ACAC
36191322 ATATACACTTTCACATTCATCACATCGGCCATTAGG
1 ATATACACTTTCACATTCATCACATCGGCCATTAGG
36191358 CCATACTATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.31, C:0.30, G:0.10, T:0.30
Consensus pattern (40 bp):
ATATACACTTTCACATTCATCACATCGGCCATTAGGACAC
Found at i:36195006 original size:39 final size:39
Alignment explanation
Indices: 36194896--36195126 Score: 196
Period size: 40 Copynumber: 5.8 Consensus size: 39
36194886 GTACTACCGG
* ** *
36194896 CACGAAGCCTGCTAGGTGCTAAGCCTAAATAACACGCCA
1 CACGAAGCCTACTAGGCACTAAGCCTAAATAACACACCA
* * * *
36194935 GCACAAAGCCTGCTAGGCACTAAGTCTGAATAACACACCA
1 -CACGAAGCCTACTAGGCACTAAGCCTAAATAACACACCA
* *
36194975 CCACGAAGTCC-AC-AGGCACTAAGCCCAAATAACACATCGA
1 -CACGAAG-CCTACTAGGCACTAAGCCTAAATAACACA-CCA
* * * *
36195015 CATGAAGCCTACTTGGCACTAAGCCGAAATAACACACTA
1 CACGAAGCCTACTAGGCACTAAGCCTAAATAACACACCA
* * * * *
36195054 GTACGAAGCCTGCTAGGCACTATGCCTGAGTAACACACCA
1 -CACGAAGCCTACTAGGCACTAAGCCTAAATAACACACCA
* * *
36195094 GCATGAAGCCTATTAGGCACTAAGCCTGAATAA
1 -CACGAAGCCTACTAGGCACTAAGCCTAAATAA
36195127 TTATAAGGTA
Statistics
Matches: 154, Mismatches: 32, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 120 0.78
41 2 0.01
ACGTcount: A:0.36, C:0.29, G:0.19, T:0.16
Consensus pattern (39 bp):
CACGAAGCCTACTAGGCACTAAGCCTAAATAACACACCA
Found at i:36197101 original size:46 final size:46
Alignment explanation
Indices: 36196994--36197120 Score: 157
Period size: 46 Copynumber: 2.7 Consensus size: 46
36196984 AAGCTAACGC
* *
36196994 CATGTCCCAGAC-TGGTCTTACACTAGCTTGTATATCGCAAGGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGC-TCT-CATCGCAAGGCCGATG
* *
36197042 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCGCAAGGCCGATG
* * *
36197088 CATGTCCCGGACATGTCTTACATTGGCTCTCAT
1 CATGTCCCAGACATGTCTTACACTAGCTCTCAT
36197121 ACTGTGGCTG
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
46 43 0.61
47 2 0.03
48 25 0.35
49 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCGCAAGGCCGATG
Found at i:36197134 original size:46 final size:45
Alignment explanation
Indices: 36196994--36197160 Score: 142
Period size: 46 Copynumber: 3.6 Consensus size: 45
36196984 AAGCTAACGC
* * * *
36196994 CATGTCCCAGAC-TGGTCTTACACTAGCTTGTATATCGCAAGGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGC-TCT-CATC-TAATGCCGATG
36197042 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCT-AATGCCGATG
* * * * *
36197088 CATGTCCCGGACATGTCTTACATTGGCTCTCATACT-GTGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCAT-CTAAT-GCCGATG
* *
36197134 CATG-CCCTAGACATGTCTAATACTAGC
1 CATGTCCC-AGACATGTCTTACACTAGC
36197161 ACACATATCA
Statistics
Matches: 100, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
45 4 0.04
46 66 0.66
47 4 0.04
48 25 0.25
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCTAATGCCGATG
Found at i:36210635 original size:53 final size:53
Alignment explanation
Indices: 36210555--36210658 Score: 181
Period size: 53 Copynumber: 2.0 Consensus size: 53
36210545 TTCCACTCTT
* *
36210555 ATTTTTACAAACTCCATTGTGATGTATCTGCTTAACCCTCAATACATTTGGGC
1 ATTTTTACAAAATCCATCGTGATGTATCTGCTTAACCCTCAATACATTTGGGC
*
36210608 ATTTTTACAAAATCCATCGTGATGTATCTGCTTAACCCTTAATACATTTGG
1 ATTTTTACAAAATCCATCGTGATGTATCTGCTTAACCCTCAATACATTTGG
36210659 ACAGACATCT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.28, C:0.21, G:0.12, T:0.38
Consensus pattern (53 bp):
ATTTTTACAAAATCCATCGTGATGTATCTGCTTAACCCTCAATACATTTGGGC
Found at i:36212188 original size:31 final size:31
Alignment explanation
Indices: 36212147--36212225 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
36212137 TTTAATGGTT
*
36212147 ACTGTGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
36212178 ACTGGGCCGAAGCCTTTTCATAAATCATGTC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
36212209 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
36212226 ACTGTAAACA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:36212300 original size:42 final size:42
Alignment explanation
Indices: 36212253--36212340 Score: 131
Period size: 42 Copynumber: 2.1 Consensus size: 42
36212243 CCTTAGGCCT
* ** * *
36212253 ATTTCAATATCACATGTAATGTCAATGGATGTATGTAAGCCC
1 ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
36212295 ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
1 ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
36212337 ATTT
1 ATTT
36212341 GGGGAGACTA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (42 bp):
ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
Found at i:36212513 original size:25 final size:25
Alignment explanation
Indices: 36212485--36212580 Score: 133
Period size: 25 Copynumber: 3.8 Consensus size: 25
36212475 CCTCTTTAAT
36212485 AACTGGGGCA-AAGCCCTTCTCGGTA
1 AACTGGGGCATAAGCCCTT-TCGGTA
**
36212510 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCC-TTTCGGTA
36212535 AACTGGGGCATAAGCCCCTTTCGGTA
1 AACTGGGGCATAAG-CCCTTTCGGTA
36212561 AACTGGGGCATAAGCCCTTT
1 AACTGGGGCATAAGCCCTTT
36212581 TGCACTTCCT
Statistics
Matches: 64, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
25 36 0.56
26 25 0.39
27 3 0.05
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Consensus pattern (25 bp):
AACTGGGGCATAAGCCCTTTCGGTA
Found at i:36212556 original size:26 final size:25
Alignment explanation
Indices: 36212473--36212577 Score: 108
Period size: 26 Copynumber: 4.2 Consensus size: 25
36212463 CTGGAGGCCT
*
36212473 AGCCTCTTT-AAT-AACTGGGGCAA
1 AGCCCCTTTCAATAAACTGGGGCAA
**
36212496 AG-CCCTTCTCGGTAAACTGGGGCAA
1 AGCCCCTT-TCAATAAACTGGGGCAA
*
36212521 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCCTTTCAATAAACTGGGGCA-A
**
36212547 AGCCCCTTTCGGTAAACTGGGGCATA
1 AGCCCCTTTCAATAAACTGGGGCA-A
36212573 AGCCC
1 AGCCC
36212578 TTTTGCACTT
Statistics
Matches: 68, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
22 4 0.06
23 3 0.04
24 1 0.01
25 27 0.40
26 33 0.49
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.23
Consensus pattern (25 bp):
AGCCCCTTTCAATAAACTGGGGCAA
Found at i:36212559 original size:51 final size:51
Alignment explanation
Indices: 36212485--36212581 Score: 162
Period size: 51 Copynumber: 1.9 Consensus size: 51
36212475 CCTCTTTAAT
36212485 AACTGGGGCAAAGCCCTTCTCGGTAAACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCAAAGCCCTTCTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
36212535 AACTGGGGCATAAGCCCCTT-TCGGTAAACTGGGGCATAAGCCCTTTT
1 AACTGGGGCA-AAG-CCCTTCTCGGTAAACTGGGGCATAAGCCCTTTT
36212582 GCACTTCCTC
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
50 10 0.23
51 19 0.43
52 15 0.34
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.24
Consensus pattern (51 bp):
AACTGGGGCAAAGCCCTTCTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:36213475 original size:27 final size:27
Alignment explanation
Indices: 36213384--36213467 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
36213374 GGGCATATTC
* * *
36213384 GTCATTTTACCATAC-AGGGGTATTACG
1 GTCACTTTACCCTACAAGGGCT-TTACG
*
36213411 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAAGGGCTTTACG
36213438 GTCACTTTACCCTACAAGGGCTTTACG
1 GTCACTTTACCCTACAAGGGCTTTACG
36213465 GTC
1 GTC
36213468 TTTTTACCTA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 47 0.92
28 4 0.08
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAAGGGCTTTACG
Found at i:36213559 original size:27 final size:27
Alignment explanation
Indices: 36213529--36213864 Score: 139
Period size: 27 Copynumber: 12.4 Consensus size: 27
36213519 GTAAATCTAC
* *
36213529 AAACTAAGGGTATTTCAGTAATTTTGT
1 AAACTAAGGGTATTTTAGTAATTTTAT
* * * *
36213556 AAACCAATGGTATTTCCA-TAATTTTTAG
1 AAACTAAGGGTATTT-TAGTAA-TTTTAT
* * * *
36213584 AAAGTCAAGGGTATTTTTGTAACTTTGT
1 AAACT-AAGGGTATTTTAGTAATTTTAT
* * * *
36213612 AAATTAGGGGTATTTTGGTAATTTTAC
1 AAACTAAGGGTATTTTAGTAATTTTAT
* * ** * *
36213639 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAACTAAGGGTATTTTAGTAATTTTAT
* * *
36213666 AAAC-CAGTGGTATTTTGGTAATTTTAC
1 AAACTAAG-GGTATTTTAGTAATTTTAT
* * * *
36213693 GAAC-CAGTGGTATTTTAGCAATTTTAC
1 AAACTAAG-GGTATTTTAGTAATTTTAT
* *
36213720 AGACT-AGGGTATTTTGGTAATTTTAT
1 AAACTAAGGGTATTTTAGTAATTTTAT
** * * *
36213746 TGA-TCGAGGGTATTTTGGTAATTTTGT
1 AAACT-AAGGGTATTTTAGTAATTTTAT
* *
36213773 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACTAAGGGTATTTTAGTAATTTTAT
*** * *
36213800 AAA-TCAAGGGTAAAATAGTAATTCTGT
1 AAACT-AAGGGTATTTTAGTAATTTTAT
*** *
36213827 AAA-TAAGGGTAAAATAGTAATTCTAT
1 AAACTAAGGGTATTTTAGTAATTTTAT
36213853 AAA-TCAAGGGTA
1 AAACT-AAGGGTA
36213865 AAACGGTAAT
Statistics
Matches: 251, Mismatches: 47, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
25 1 0.00
26 45 0.18
27 177 0.71
28 16 0.06
29 12 0.05
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (27 bp):
AAACTAAGGGTATTTTAGTAATTTTAT
Found at i:36213678 original size:54 final size:53
Alignment explanation
Indices: 36213619--36213811 Score: 190
Period size: 54 Copynumber: 3.6 Consensus size: 53
36213609 TGTAAATTAG
* * *
36213619 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCA
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACCA
* * * * * *
36213672 GTGGTATTTTGGTAATTTTACGAA-CCAGTGGTATTTTAGCAATTTTACAGACTA
1 G-GGTATTTTGGTAATTTTACAAATCGAG-GGTATTTTGGTAATTTTACAAACCA
*** **
36213726 GGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACC-A
* ** *
36213780 GGGTATTTTAGTAATTTTGTAAATCAAGGGTA
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTA
36213812 AAATAGTAAT
Statistics
Matches: 112, Mismatches: 24, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
53 40 0.36
54 72 0.64
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.41
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACCA
Found at i:36213836 original size:80 final size:81
Alignment explanation
Indices: 36213752--36213932 Score: 184
Period size: 80 Copynumber: 2.2 Consensus size: 81
36213742 TTATTGATCG
* * **** * *
36213752 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCAAGGGTAAAATA
1 AGGGTAATTTGGTAATTTTATAAACCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACA
*
36213817 GTAATTCTGTAAAT-A
66 GTAATTCTATAAATCA
** * * * * * *
36213832 AGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
1 AGGGTAATTTGGTAATTTTATAAACCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACA
*
36213897 GTAATTCTATAAATCG
66 GTAATTCTATAAATCA
*
36213913 AGGGTACTTTGGTAATTTTA
1 AGGGTAATTTGGTAATTTTA
36213933 CAATTTGAGG
Statistics
Matches: 77, Mismatches: 23, Indels: 1
0.76 0.23 0.01
Matches are distributed among these distances:
80 62 0.81
81 15 0.19
ACGTcount: A:0.38, C:0.07, G:0.21, T:0.34
Consensus pattern (81 bp):
AGGGTAATTTGGTAATTTTATAAACCAAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACA
GTAATTCTATAAATCA
Found at i:36213856 original size:53 final size:54
Alignment explanation
Indices: 36213763--36213918 Score: 188
Period size: 53 Copynumber: 2.9 Consensus size: 54
36213753 GGGTATTTTG
* * *** * * *
36213763 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACA
*
36213817 GTAATTCTGTAAAT-AAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACA
* ** *
36213870 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
1 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTA
36213919 CTTTGGTAAT
Statistics
Matches: 88, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 46 0.52
54 42 0.48
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (54 bp):
GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACA
Found at i:36213929 original size:27 final size:27
Alignment explanation
Indices: 36213761--36213918 Score: 174
Period size: 27 Copynumber: 5.9 Consensus size: 27
36213751 GAGGGTATTT
* * ***
36213761 TGGTAATTTTGTAAACCAAGGGTATTT
1 TGGTAATTCTGTAAATCAAGGGTAAAA
* *
36213788 TAGTAATTTTGTAAATCAAGGGTAAAA
1 TGGTAATTCTGTAAATCAAGGGTAAAA
*
36213815 TAGTAATTCTGTAAAT-AAGGGTAAAA
1 TGGTAATTCTGTAAATCAAGGGTAAAA
* *
36213841 TAGTAATTCTATAAATCAAGGGTAAAA
1 TGGTAATTCTGTAAATCAAGGGTAAAA
* *
36213868 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAATCAAGGGTAAAA
* * *
36213895 CGGTAATTCTATAAATCGAGGGTA
1 TGGTAATTCTGTAAATCAAGGGTA
36213919 CTTTGGTAAT
Statistics
Matches: 118, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
26 25 0.21
27 93 0.79
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.32
Consensus pattern (27 bp):
TGGTAATTCTGTAAATCAAGGGTAAAA
Found at i:36216072 original size:44 final size:43
Alignment explanation
Indices: 36215928--36216116 Score: 122
Period size: 44 Copynumber: 4.3 Consensus size: 43
36215918 TTGAATTTGA
* * *
36215928 GGCACTAAGTGTGCGA-AA-AATGAAGTAGCTACGGCTATTAAAAAT
1 GGCACTAAGTGTGCGATAATAAT--A-TAGCTTCGGCTAAT-GAAAT
* * *
36215973 GGCACTGAGTGTGCGAGAAT-ATAATAG-TGATC-GCGGAAT-AAAT
1 GGCACTAAGTGTGCGATAATAAT-ATAGCT--TCGGC-TAATGAAAT
* * * *
36216016 AGCACTATGTGTGCGATACTAATATAAG-TTCGGTTTAATGAAAT
1 GGCACTAAGTGTGCGATAATAATAT-AGCTTCGG-CTAATGAAAT
* *
36216060 GGCACTAAGTGTGCGATAATATTATAGCTTCGGCTAATTAAATT
1 GGCACTAAGTGTGCGATAATAATATAGCTTCGGCTAATGAAA-T
36216104 GGCACTAAGTGTG
1 GGCACTAAGTGTG
36216117 TGAGTTCATT
Statistics
Matches: 115, Mismatches: 17, Indels: 25
0.73 0.11 0.16
Matches are distributed among these distances:
42 2 0.02
43 35 0.30
44 54 0.47
45 20 0.17
46 4 0.03
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (43 bp):
GGCACTAAGTGTGCGATAATAATATAGCTTCGGCTAATGAAAT
Found at i:36221594 original size:31 final size:31
Alignment explanation
Indices: 36221559--36221622 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
36221549 GTAAAACGAG
36221559 ATAGTCTGAAAGCAGCTGTAGATTGTCAAAA
1 ATAGTCTGAAAGCAGCTGTAGATTGTCAAAA
* *
36221590 ATAGTCTGAAAGCAGTTGTAGATTGTCAGAA
1 ATAGTCTGAAAGCAGCTGTAGATTGTCAAAA
36221621 AT
1 AT
36221623 CGTATGCAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.11, G:0.23, T:0.28
Consensus pattern (31 bp):
ATAGTCTGAAAGCAGCTGTAGATTGTCAAAA
Found at i:36228324 original size:20 final size:20
Alignment explanation
Indices: 36228288--36228325 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
36228278 TTTCATTTCA
*
36228288 TTTATTTATTTGTTTATTCT
1 TTTATTTATTTGATTATTCT
36228308 TTTATTTACTTT-ATTATT
1 TTTATTTA-TTTGATTATT
36228326 ATATATTACT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.18, C:0.05, G:0.03, T:0.74
Consensus pattern (20 bp):
TTTATTTATTTGATTATTCT
Found at i:36237732 original size:16 final size:16
Alignment explanation
Indices: 36237711--36237775 Score: 52
Period size: 16 Copynumber: 4.4 Consensus size: 16
36237701 ATATCATAAT
36237711 CATTTCTCATATTTTC
1 CATTTCTCATATTTTC
*
36237727 CATTTC-AATATTTTC
1 CATTTCTCATATTTTC
36237742 TCA--TCTCATA--TT-
1 -CATTTCTCATATTTTC
* *
36237754 CATTTATCATATTTGC
1 CATTTCTCATATTTTC
36237770 CATTTC
1 CATTTC
36237776 AATATTAATC
Statistics
Matches: 37, Mismatches: 5, Indels: 14
0.66 0.09 0.25
Matches are distributed among these distances:
11 2 0.05
13 8 0.22
14 2 0.05
15 12 0.32
16 13 0.35
ACGTcount: A:0.23, C:0.23, G:0.02, T:0.52
Consensus pattern (16 bp):
CATTTCTCATATTTTC
Found at i:36237752 original size:15 final size:14
Alignment explanation
Indices: 36237715--36237753 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
36237705 CATAATCATT
36237715 TCTCATATTTTCCA
1 TCTCATATTTTCCA
*
36237729 TTTCAATATTTTCTCA
1 TCTC-ATATTTTC-CA
36237745 TCTCATATT
1 TCTCATATT
36237754 CATTTATCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
14 3 0.14
15 13 0.62
16 5 0.24
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.54
Consensus pattern (14 bp):
TCTCATATTTTCCA
Found at i:36237757 original size:43 final size:43
Alignment explanation
Indices: 36237699--36237781 Score: 130
Period size: 43 Copynumber: 1.9 Consensus size: 43
36237689 ATCTCATTTA
* *
36237699 TCATATCATAATCATTTCTCATATTTTCCATTTCAATATTTTC
1 TCATATCATAATCATTTATCATATTTGCCATTTCAATATTTTC
* *
36237742 TCATCTCATATTCATTTATCATATTTGCCATTTCAATATT
1 TCATATCATAATCATTTATCATATTTGCCATTTCAATATT
36237782 AATCACATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.28, C:0.20, G:0.01, T:0.51
Consensus pattern (43 bp):
TCATATCATAATCATTTATCATATTTGCCATTTCAATATTTTC
Found at i:36239009 original size:15 final size:15
Alignment explanation
Indices: 36238985--36239020 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
36238975 TTATGTTTTC
*
36238985 ATTA-TATTATCTTT
1 ATTATTATTATCATT
36238999 ATTATTATTATCATT
1 ATTATTATTATCATT
36239014 ATTATTA
1 ATTATTA
36239021 AAGTTACTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 4 0.20
15 16 0.80
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
ATTATTATTATCATT
Found at i:36242646 original size:40 final size:40
Alignment explanation
Indices: 36242571--36242788 Score: 338
Period size: 39 Copynumber: 5.5 Consensus size: 40
36242561 AACCCAAGTA
* *
36242571 CCTTCGGGATTTAG-CCAGATATAG-CAACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACT-AGCACAAATG
*
36242610 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
36242650 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
36242689 CCTTCGGGACTTAGCCCGAATATATTCACTAGCAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
36242728 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
36242768 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
36242789 GTCATCCGAA
Statistics
Matches: 167, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
39 88 0.53
40 78 0.47
41 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:36251150 original size:40 final size:40
Alignment explanation
Indices: 36251076--36251292 Score: 352
Period size: 40 Copynumber: 5.5 Consensus size: 40
36251066 AACCCAAGTA
* ** *
36251076 CCTTCGGGATTTAG-CCGGATATAGGAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
36251115 CCTTCGGGACTTAGCCCAGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
36251155 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
36251194 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
36251233 -CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
36251272 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
36251293 GTCATCCGAA
Statistics
Matches: 167, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
38 34 0.20
39 60 0.36
40 73 0.44
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:36251283 original size:117 final size:118
Alignment explanation
Indices: 36251076--36251292 Score: 357
Period size: 117 Copynumber: 1.8 Consensus size: 118
36251066 AACCCAAGTA
* *
36251076 CCTTCGGGATTTAGCCGGATATAGGAACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATAGT
1 CCTTCGGGACTTAGCCGGATATAGGAACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAGT
36251141 CAATAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAATG
66 CAATAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAATG
** *
36251194 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-AATG-CTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAG-CCGGATATAGGAACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAG
*
36251257 TCACTAGCACAAATGCCTTCGGGACTTAGCCCGGAT
65 TCAATAGCACAAATGCCTTCGGGACTTAGCCCGGAT
36251293 GTCATCCGAA
Statistics
Matches: 92, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
117 58 0.63
118 17 0.18
119 17 0.18
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.23
Consensus pattern (118 bp):
CCTTCGGGACTTAGCCGGATATAGGAACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAGT
CAATAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAATG
Found at i:36253481 original size:44 final size:42
Alignment explanation
Indices: 36253414--36253507 Score: 154
Period size: 44 Copynumber: 2.2 Consensus size: 42
36253404 AGACAGAGTT
36253414 TTACACGAAATCAAATACGATGCCAACGTCCCAGACGTGGTC
1 TTACACGAAATCAAATACGATGCCAACGTCCCAGACGTGGTC
36253456 TTACACGTAAATCATAAGT-CGATGCCAACGTCCCAGACGTGGTC
1 TTACACG-AAATCA-AA-TACGATGCCAACGTCCCAGACGTGGTC
36253500 TTACACGA
1 TTACACGA
36253508 TAACACATAT
Statistics
Matches: 49, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
42 7 0.14
43 7 0.14
44 34 0.69
45 1 0.02
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (42 bp):
TTACACGAAATCAAATACGATGCCAACGTCCCAGACGTGGTC
Found at i:36261269 original size:23 final size:23
Alignment explanation
Indices: 36261243--36261286 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
36261233 CTAATTAGGC
36261243 TTACTTCGGATTTGAATTTTTGT
1 TTACTTCGGATTTGAATTTTTGT
36261266 TTACTTCGGATTTGAATTTTT
1 TTACTTCGGATTTGAATTTTT
36261287 TCAAAGGTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.18, C:0.09, G:0.16, T:0.57
Consensus pattern (23 bp):
TTACTTCGGATTTGAATTTTTGT
Found at i:36261390 original size:22 final size:22
Alignment explanation
Indices: 36261349--36261397 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
36261339 GACCTTTTGG
* *
36261349 ATTCAGATTATTTCAAGCTCGA
1 ATTCAGATCATTTCAAGCTCAA
**
36261371 ATTCAGATCATTTCGGGCTCAA
1 ATTCAGATCATTTCAAGCTCAA
36261393 ATTCA
1 ATTCA
36261398 TTTAGACGGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (22 bp):
ATTCAGATCATTTCAAGCTCAA
Found at i:36262071 original size:17 final size:17
Alignment explanation
Indices: 36262030--36262071 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 17
36262020 TATTATAATC
*
36262030 TATAATATAATAATATT
1 TATAATATATTAATATT
36262047 TAT--TATATTAATATT
1 TATAATATATTAATATT
*
36262062 TATAAAATAT
1 TATAATATAT
36262072 ATTACTTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
15 14 0.67
17 7 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TATAATATATTAATATT
Found at i:36264709 original size:28 final size:28
Alignment explanation
Indices: 36264677--36264733 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
36264667 TGGTGTTTTG
36264677 ATCAGGTAAGCCCATATGGTATTTATTT
1 ATCAGGTAAGCCCATATGGTATTTATTT
36264705 ATCAGGTAAGCCCATATGGTATTTATTT
1 ATCAGGTAAGCCCATATGGTATTTATTT
36264733 A
1 A
36264734 CTTAGGTTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.39
Consensus pattern (28 bp):
ATCAGGTAAGCCCATATGGTATTTATTT
Found at i:36273761 original size:13 final size:13
Alignment explanation
Indices: 36273743--36273767 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36273733 TCGGTAGGGG
36273743 CATGCCCGTGTGA
1 CATGCCCGTGTGA
36273756 CATGCCCGTGTG
1 CATGCCCGTGTG
36273768 CGATTACTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.32, G:0.32, T:0.24
Consensus pattern (13 bp):
CATGCCCGTGTGA
Found at i:36286493 original size:34 final size:34
Alignment explanation
Indices: 36286450--36286523 Score: 123
Period size: 34 Copynumber: 2.2 Consensus size: 34
36286440 GCATATTGTT
36286450 CTGAAATGGGCTAAGGCCCAGACTG-TCACTATTA
1 CTGAAATGGGCTAAGGCCCAGACTGCT-ACTATTA
*
36286484 CTGAAATGGGCTAAGGCCCAGACTGCTACTGTTA
1 CTGAAATGGGCTAAGGCCCAGACTGCTACTATTA
36286518 CTGAAA
1 CTGAAA
36286524 AATGGGATAA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
34 37 0.97
35 1 0.03
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (34 bp):
CTGAAATGGGCTAAGGCCCAGACTGCTACTATTA
Found at i:36288983 original size:44 final size:42
Alignment explanation
Indices: 36288907--36289004 Score: 117
Period size: 44 Copynumber: 2.3 Consensus size: 42
36288897 GATTGTGTTA
* * *
36288907 TCGTGTAAGACCACGTCTGAGACGTTGGCATCG-ACTTATGATT
1 TCGTGTAAGACCACGTCTGAGACATCGACATCGTA-TT-TGATT
* *
36288950 TACGTGTAAGACCATGTCTGGGACATCGACATCGTATTTGATT
1 T-CGTGTAAGACCACGTCTGAGACATCGACATCGTATTTGATT
36288993 TCGTGTAAGACC
1 TCGTGTAAGACC
36289005 CTATTTGGGA
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
42 11 0.23
43 7 0.15
44 29 0.60
45 1 0.02
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGACCACGTCTGAGACATCGACATCGTATTTGATT
Found at i:36289068 original size:43 final size:43
Alignment explanation
Indices: 36288908--36289066 Score: 146
Period size: 43 Copynumber: 3.7 Consensus size: 43
36288898 ATTGTGTTAT
* *
36288908 CGTGTAAGACCACGTCTGAGACGTTGGCATCGACT-TATGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTA
* * * * *
36288952 CGTGTAAGACCATGTCTGGGACATCGACATCG-TATTTGATTT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
* * * *
36288994 CGTGTAAGACC-CTATTTGGGACAG-TGGCATTGATATTTGGTTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTA
*
36289037 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
36289067 TGTATGAGCT
Statistics
Matches: 90, Mismatches: 19, Indels: 13
0.74 0.16 0.11
Matches are distributed among these distances:
42 27 0.30
43 35 0.39
44 28 0.31
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
Found at i:36298194 original size:29 final size:29
Alignment explanation
Indices: 36298134--36298213 Score: 90
Period size: 29 Copynumber: 2.8 Consensus size: 29
36298124 AGTTTGCCAC
* * *
36298134 AAGGCATTCATTTAACAGAGATAGCTAGA
1 AAGGCTTTCATATAACAGAGATAGCTAAA
36298163 AAGGCTTTCATATAACAGAGATCA-CTAAA
1 AAGGCTTTCATATAACAGAGAT-AGCTAAA
* * *
36298192 AAGCCTTTCTTATAACAAAGAT
1 AAGGCTTTCATATAACAGAGAT
36298214 TGCCACAAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
29 43 0.98
30 1 0.02
ACGTcount: A:0.42, C:0.16, G:0.15, T:0.26
Consensus pattern (29 bp):
AAGGCTTTCATATAACAGAGATAGCTAAA
Found at i:36299391 original size:20 final size:19
Alignment explanation
Indices: 36299366--36299427 Score: 58
Period size: 20 Copynumber: 3.3 Consensus size: 19
36299356 CCAATACATT
36299366 TCACATAGCATATATTGAGC
1 TCACATAGCATATATTGA-C
** *
36299386 TCACATCTCATACATT---
1 TCACATAGCATATATTGAC
36299402 TCACATAGCATATATTGAAC
1 TCACATAGCATATATTG-AC
36299422 TCACAT
1 TCACAT
36299428 CTCATACTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
16 13 0.41
20 19 0.59
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.32
Consensus pattern (19 bp):
TCACATAGCATATATTGAC
Found at i:36299406 original size:36 final size:36
Alignment explanation
Indices: 36299359--36299439 Score: 144
Period size: 36 Copynumber: 2.2 Consensus size: 36
36299349 TCACTAGCCA
*
36299359 ATACATTTCACATAGCATATATTGAGCTCACATCTC
1 ATACATTTCACATAGCATATATTGAACTCACATCTC
36299395 ATACATTTCACATAGCATATATTGAACTCACATCTC
1 ATACATTTCACATAGCATATATTGAACTCACATCTC
*
36299431 ATACTTTTC
1 ATACATTTC
36299440 TCATCTAACT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 43 1.00
ACGTcount: A:0.33, C:0.25, G:0.06, T:0.36
Consensus pattern (36 bp):
ATACATTTCACATAGCATATATTGAACTCACATCTC
Found at i:36299823 original size:140 final size:140
Alignment explanation
Indices: 36299582--36299840 Score: 333
Period size: 140 Copynumber: 1.8 Consensus size: 140
36299572 AGGCTAAGAC
* **
36299582 CATGTCCCAGACATGGTCTTACATTAGCTCTCACATATCCGTGCCGATGCCATATCCCAGACAGG
1 CATGTCCCAGACATGGTCTTACACTAGCTCT-ACATATCAATGCCGATGCCATATCCCAGACAGG
** *
36299647 GTCTTACACTGACACATCTTGTAGCTGATGCATGTCCTAGACATGTCTTACACTGGCTTATGTCA
65 GTCTTACACTGACACATAATGTAGCTGATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCA
36299712 CGAGGTTGATA
130 CGAGGTTGATA
* * * * *
36299723 CATGTCCCAGACAT-GTCTTACACTAGCTCT-CGTCTCAATGTCGATGCCATCTCCCAGACATGG
1 CATGTCCCAGACATGGTCTTACACTAGCTCTACATATCAATGCCGATGCCATATCCCAGACAGGG
* * * * *
36299786 TCTTACGCTGGCTCTTATAATGTGGCTTATGCATGTCCCAGACATGTCTTACACT
66 TCTTACACTGACAC--ATAATGTAGCTGATGCATGTCCCAGACATGTCTTACACT
36299841 AGCACACAAA
Statistics
Matches: 100, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
138 37 0.37
140 49 0.49
141 14 0.14
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (140 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCTACATATCAATGCCGATGCCATATCCCAGACAGGG
TCTTACACTGACACATAATGTAGCTGATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCAC
GAGGTTGATA
Found at i:36306044 original size:27 final size:27
Alignment explanation
Indices: 36306014--36306217 Score: 203
Period size: 27 Copynumber: 7.6 Consensus size: 27
36306004 CCTTAATCGA
*
36306014 TAAAATGACTATTTTACCCTTATGAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* **
36306041 TAAAATAACTATTTTGCCCTTACAAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* * * *
36306068 TGAAATGATTGTTTTGCCCTTAGGAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* * * * * *
36306095 TAAAAGGATTGTTTTACCTTTATGATG
1 TAAAATGACTATTTTGCCCTTATGAGG
*
36306122 TAAAATGACTGTTTTGCCCTTATGAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* * *
36306149 TAAAATGACTGTTTCGCCCTTATAAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* *
36306176 TAAAATGACTATTTTTCCCTT-TTATGG
1 TAAAATGACTATTTTGCCCTTATGA-GG
*
36306203 TAAGATGACTATTTT
1 TAAAATGACTATTTT
36306218 ACCCCTATAT
Statistics
Matches: 148, Mismatches: 28, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
26 2 0.01
27 146 0.99
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGAGG
Found at i:36306574 original size:30 final size:30
Alignment explanation
Indices: 36306538--36306595 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
36306528 AGACTAGCAT
*
36306538 ACTGTTTACCGTTACTGCACTATTTACTAC
1 ACTGTTTACCGTTACTACACTATTTACTAC
* *
36306568 ACTGTTTACTGTTACTACACTGTTTACT
1 ACTGTTTACCGTTACTACACTATTTACT
36306596 GTTACTGCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.22, C:0.24, G:0.10, T:0.43
Consensus pattern (30 bp):
ACTGTTTACCGTTACTACACTATTTACTAC
Found at i:36306582 original size:18 final size:18
Alignment explanation
Indices: 36306561--36306601 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
36306551 ACTGCACTAT
36306561 TTACTACACTGTTTACTG
1 TTACTACACTGTTTACTG
36306579 TTACTACACTGTTTACTG
1 TTACTACACTGTTTACTG
36306597 TTACT
1 TTACT
36306602 GCAATGGGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.22, C:0.22, G:0.10, T:0.46
Consensus pattern (18 bp):
TTACTACACTGTTTACTG
Found at i:36309577 original size:21 final size:21
Alignment explanation
Indices: 36309551--36309603 Score: 106
Period size: 21 Copynumber: 2.5 Consensus size: 21
36309541 CTACTCACTA
36309551 TGTTGCAACATCGACCTTCCG
1 TGTTGCAACATCGACCTTCCG
36309572 TGTTGCAACATCGACCTTCCG
1 TGTTGCAACATCGACCTTCCG
36309593 TGTTGCAACAT
1 TGTTGCAACAT
36309604 TATGGTCAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.21, C:0.30, G:0.19, T:0.30
Consensus pattern (21 bp):
TGTTGCAACATCGACCTTCCG
Found at i:36321479 original size:138 final size:137
Alignment explanation
Indices: 36321298--36321996 Score: 699
Period size: 140 Copynumber: 5.1 Consensus size: 137
36321288 GAGAACATAG
* * * * * * *
36321298 ATATAATTAATATATGATTTTGTTTCATACAATATATTAATTGTCTATATTTTATCAATTTTATT
1 ATATAATTAATATATAAATTTGATTAATACAAAATATTAATTGTATATATTTTACCAA-TTTATT
* *
36321363 AATATAAGA-AATTATATTAATTAATTCTGGTCAAGATATAAAAAACATGGAAATTAATATTCTT
65 AATATAA-ACAATTATATTAATTAATTCTGGTCAAAATATAAAAAACATAGAAATTAATATTCTT
36321427 TTGGACAA-A
129 TTGGA-AAGA
*
36321436 ATATGATTAATATATAAATTTGATTAATACAAAATATTAATTGTATATATTTTACCAAATTTATT
1 ATATAATTAATATATAAATTTGATTAATACAAAATATTAATTGTATATATTTTACC-AATTTATT
* * *
36321501 AATATAAACAATTATATTAATTAATT-TCGGTCAAAATATAAAAGACAT-GAAA--ATTATTATT
65 AATATAAACAATTATATTAATTAATTCT-GGTCAAAATATAAAAAACATAGAAATTAATATTCTT
36321562 TTGGAAAGA
129 TTGGAAAGA
* * * * * * *
36321571 ATATAATTAATATATGAATTTGATTCAA-ACTAAATATTAGTTGTAGATATTTTATCGAAATTGT
1 ATATAATTAATATATAAATTTGATT-AATACAAAATATTAATTGTATATATTTTA-CCAATTTAT
* * ** *
36321635 TGATATAAACAATTATATTAATTAATTTCAAT-TTTGAAATA-AAAGAA-ATAGAAATTAATATT
64 TAATATAAACAATTATATTAATTAA-TTC--TGGTCAAAATATAAAAAACATAGAAATTAATATT
* *
36321697 GTTTTGGAAATA
126 CTTTTGGAAAGA
* * * *
36321709 ATATAATTAATATATATGAATTTGATTCAA-ACTAAATATTAGTTGTAGATATTTTACCGAAATT
1 ATATAATTAATATATA--AATTTGATT-AATACAAAATATTAATTGTATATATTTTACC-AATTT
* * * ** * *
36321773 GTTAATATAAACAATTATATTAATTAATTTCAGTTTTGACATA-AAAGAA-ATAGAAATTAATAT
62 ATTAATATAAACAATTATATTAATTAA-TTCTG-GTCAAAATATAAAAAACATAGAAATTAATAT
* *
36321836 TGTTTTGGAAATA
125 TCTTTTGGAAAGA
*
36321849 ATATAATTAATATATATGAATTTGAATT-ATACAAAATATTAATTGTATATATTTTACAGAATTT
1 ATATAATTAATATATA--AATTTG-ATTAATACAAAATATTAATTGTATATATTTTAC-CAATTT
* * *
36321913 ATTAATATAAA-AAGTTATATTAATTAATTCCGGTCAAAATATAAAAGACATTGAAATTAATATT
62 ATTAATATAAACAA-TTATATTAATTAATTCTGGTCAAAATATAAAAAACATAGAAATTAATATT
*
36321977 CTTCTGGAAAGA
126 CTTTTGGAAAGA
36321989 ATATAATT
1 ATATAATT
36321997 CTTCTTTTTC
Statistics
Matches: 486, Mismatches: 51, Indels: 46
0.83 0.09 0.08
Matches are distributed among these distances:
134 2 0.00
135 90 0.19
136 13 0.03
137 12 0.02
138 131 0.27
139 15 0.03
140 220 0.45
141 3 0.01
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (137 bp):
ATATAATTAATATATAAATTTGATTAATACAAAATATTAATTGTATATATTTTACCAATTTATTA
ATATAAACAATTATATTAATTAATTCTGGTCAAAATATAAAAAACATAGAAATTAATATTCTTTT
GGAAAGA
Found at i:36321802 original size:71 final size:71
Alignment explanation
Indices: 36321587--36321802 Score: 182
Period size: 71 Copynumber: 3.1 Consensus size: 71
36321577 TTAATATATG
*
36321587 AATTTGATTCAAACTAAATATTAGTTGTAGATATTTTATCGAAATTGTTGATATAAACAATTATA
1 AATTTGATTCAAACTAAATATTAGTTGTAGATATTTTATCGAAATTGTTAATATAAACAATTATA
36321652 TTAATT
66 TTAATT
* * * * * * * *
36321658 AATTTCAATTTTGAAA-TAAAAGAAATAGAAAT-TA-ATATTGTTTTGGAAA----TAATATAAT
1 AATTT-GA--TTCAAACT-AAA-TATTAG--TTGTAGATATT-TTATCGAAATTGTTAATATAAA
* *
36321716 TAA-TATA-T-ATG
58 CAATTATATTAATT
*
36321727 AATTTGATTCAAACTAAATATTAGTTGTAGATATTTTACCGAAATTGTTAATATAAACAATTATA
1 AATTTGATTCAAACTAAATATTAGTTGTAGATATTTTATCGAAATTGTTAATATAAACAATTATA
36321792 TTAATT
66 TTAATT
36321798 AATTT
1 AATTT
36321803 CAGTTTTGAC
Statistics
Matches: 105, Mismatches: 22, Indels: 36
0.64 0.13 0.22
Matches are distributed among these distances:
63 1 0.01
64 8 0.08
65 9 0.09
66 8 0.08
67 1 0.01
68 11 0.10
69 11 0.10
70 2 0.02
71 16 0.15
72 10 0.10
73 1 0.01
74 8 0.08
75 9 0.09
76 9 0.09
77 1 0.01
ACGTcount: A:0.44, C:0.05, G:0.09, T:0.42
Consensus pattern (71 bp):
AATTTGATTCAAACTAAATATTAGTTGTAGATATTTTATCGAAATTGTTAATATAAACAATTATA
TTAATT
Found at i:36339694 original size:124 final size:124
Alignment explanation
Indices: 36339529--36339778 Score: 358
Period size: 124 Copynumber: 2.0 Consensus size: 124
36339519 CATGAAAATT
* * *
36339529 AATATTCTTTTAGAAAAAGATATAATTAATAGATGAATTTGATTAATAAAAAATATTAATTGTAT
1 AATATTCTTTTAGAAAAAGATATAACTAATAGAGGAATTTGATTAATAAAAAATACTAATTGTAT
* *
36339594 ATATTTTACCGAATTTATTAATATAAATAGTTATATTAATCAATTTTGGTCAAAATATA
66 ATATTTTACCAAATTTATTAATATAAACAGTTATATTAATCAATTTTGGTCAAAATATA
* * * *
36339653 AATATTCTTTTGGAAAAA-ATATAACTAATATAGGAATTTTGATTCATACAAAATACTAATTGTA
1 AATATTCTTTTAGAAAAAGATATAACTAATAGAGGAA-TTTGATTAATAAAAAATACTAATTGTA
* * * * *
36339717 TATTTTTTACTAAATTTATTCATATAAACAGTTATATTAATTAATTTTGGTTAAAATATA
65 TATATTTTACCAAATTTATTAATATAAACAGTTATATTAATCAATTTTGGTCAAAATATA
36339777 AA
1 AA
36339779 AGACATGAAA
Statistics
Matches: 111, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
123 15 0.14
124 96 0.86
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (124 bp):
AATATTCTTTTAGAAAAAGATATAACTAATAGAGGAATTTGATTAATAAAAAATACTAATTGTAT
ATATTTTACCAAATTTATTAATATAAACAGTTATATTAATCAATTTTGGTCAAAATATA
Found at i:36340041 original size:140 final size:138
Alignment explanation
Indices: 36339653--36340095 Score: 661
Period size: 140 Copynumber: 3.2 Consensus size: 138
36339643 TCAAAATATA
* * * *
36339653 AATATTCTTTTGGAAAAAATATAACTAATATAGGAATTTTGATTCATACAAAATACTAATTGTAT
1 AATATTCTTTTGGAAAGAATATAATTAATATATGAA-TTTGATTCATACAAAATATTAATTGTAT
* * * * *
36339718 ATTTTTTACTAAATTTATTCATATAAACAGTTATATTAATTAATTTTGGTTAAAATATAAAAGAC
65 ATATTTTACTGAATTTATTAATATAAACAGTTATATTAATTAATTTTGATTAAAATATAAAAGAT
* *
36339783 ATGAAAAAT
130 ATGGAAATT
*
36339792 AATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAGTTGTATA
1 AATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATA
* *
36339857 TATTTTACTGAACTTATTAATATAAACAGTTATATTAATTAATTTTGATTAAAATATAAAATATA
66 TATTTTACTGAATTTATTAATATAAACAGTTATATTAATTAATTTTGATTAAAATATAAAAGATA
36339922 TGGAAATT
131 TGGAAATT
* *
36339930 AATATTCTTTTGGAAATAATATAATTAATATATATGAATTTGATTCATAAAAAATATTAATTGTA
1 AATATTCTTTTGGAAAGAATATAATT-A-ATATATGAATTTGATTCATACAAAATATTAATTGTA
* ** *
36339995 TATATTTTACTGAATTTATTAATATAAACAATTATATTAATTAATTTCAATCAAAATATAAAAGA
64 TATATTTTACTGAATTTATTAATATAAACAGTTATATTAATTAATTTTGATTAAAATATAAAAGA
36340060 TATGGAAATT
129 TATGGAAATT
* *
36340070 AATATTTTTTTGAAAAGAATATAATT
1 AATATTCTTTTGGAAAGAATATAATT
36340096 CATTTTTCTA
Statistics
Matches: 276, Mismatches: 26, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
138 116 0.42
139 34 0.12
140 126 0.46
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.42
Consensus pattern (138 bp):
AATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATA
TATTTTACTGAATTTATTAATATAAACAGTTATATTAATTAATTTTGATTAAAATATAAAAGATA
TGGAAATT
Found at i:36342071 original size:38 final size:42
Alignment explanation
Indices: 36342019--36342435 Score: 294
Period size: 49 Copynumber: 8.8 Consensus size: 42
36342009 ATATACACTT
36342019 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA-A
*
36342063 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA-A
36342110 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCAC--ATATATA-A
* * *
36342159 CTTTCACATTCATCACATTGGTCATTCGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCAC--ATATATA-A
* *
36342208 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA-A
*
36342255 CTTTCACATTCATCACATCGGTCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCAC--ATATATA-A
* *
36342304 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCAC--ATATATA-A
* *
36342353 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA-A
36342400 CTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATC
36342436 TCACATCGGC
Statistics
Matches: 352, Mismatches: 14, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 167 0.47
49 185 0.53
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (42 bp):
TCACATTATCACATCGGCCATTAGGCCTTATCACATATATAA
Found at i:36342173 original size:49 final size:49
Alignment explanation
Indices: 36341952--36342626 Score: 770
Period size: 47 Copynumber: 13.6 Consensus size: 49
36341942 CCCTTCGGGA
* * * * *
36341952 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36341999 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36342046 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36342093 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36342140 CTTATCACATATATATACACTTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36342189 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36342238 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36342285 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36342334 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36342383 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** **
36342430 CTTATCTCACATCGGCCAT-TAGGC-CTTATCACATATATATACACTTTCACATTCATCACATT-
1 CTTA--TCACAT-----ATATATACACTT-TCAC----AT-T-CA---TCACA-TCGGC-CATTA
36342492 GGC
47 GGC
* * *
36342495 CATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 C-TT----ATCA-CATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36342550 CTTATCACATATATATACACTTTCACATTCATCACAT-TGACATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36342598 CTTATCACATATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
36342627 TATTCAAATA
Statistics
Matches: 553, Mismatches: 39, Indels: 71
0.83 0.06 0.11
Matches are distributed among these distances:
46 1 0.00
47 220 0.40
48 38 0.07
49 218 0.39
50 2 0.00
54 9 0.02
55 14 0.03
56 7 0.01
59 4 0.01
60 2 0.00
61 4 0.01
64 7 0.01
65 14 0.03
66 9 0.02
68 2 0.00
69 2 0.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36342440 original size:71 final size:72
Alignment explanation
Indices: 36342365--36342508 Score: 236
Period size: 73 Copynumber: 2.0 Consensus size: 72
36342355 TTCACATTCA
* *
36342365 TCACATTGGCCATTCGGCCTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGG
1 TCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGG
36342429 CCTTATC
66 CCTTATC
* *
36342436 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCG
1 TCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAG
36342501 GCCTTATC
65 GCCTTATC
36342509 ACATATATAC
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
71 24 0.36
73 43 0.64
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.33
Consensus pattern (72 bp):
TCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGG
CCTTATC
Found at i:36342444 original size:24 final size:24
Alignment explanation
Indices: 36342412--36342459 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
36342402 TTCACATTCA
36342412 TCACATCGGCCATTAGGCCTTATC
1 TCACATCGGCCATTAGGCCTTATC
36342436 TCACATCGGCCATTAGGCCTTATC
1 TCACATCGGCCATTAGGCCTTATC
36342460 ACATATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.33, G:0.17, T:0.29
Consensus pattern (24 bp):
TCACATCGGCCATTAGGCCTTATC
Found at i:36342455 original size:120 final size:120
Alignment explanation
Indices: 36342316--36342555 Score: 462
Period size: 120 Copynumber: 2.0 Consensus size: 120
36342306 TTCACATTCA
* *
36342316 TCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCG
1 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCG
36342381 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
66 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
36342436 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCG
1 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCG
36342501 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
66 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
36342556 ACATATATAT
Statistics
Matches: 118, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 118 1.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (120 bp):
TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCG
GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
Found at i:36342457 original size:169 final size:167
Alignment explanation
Indices: 36342267--36342603 Score: 586
Period size: 169 Copynumber: 2.0 Consensus size: 167
36342257 TTCACATTCA
*
36342267 TCACATCGGTCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCG
1 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCG
* *
36342332 GCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC-ATATA
66 GCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATA
*
36342396 TACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
129 TACACTTTCACATTCATCACAT-GGACATTAGGCCTTATC
36342436 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCG
1 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCG
36342501 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
66 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATAT
*
36342566 ACACTTTCACATTCATCACATTGACATTAGGCCTTATC
130 ACACTTTCACATTCATCACATGGACATTAGGCCTTATC
36342604 ACATATATAT
Statistics
Matches: 161, Mismatches: 5, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
167 45 0.28
168 15 0.09
169 101 0.63
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (167 bp):
TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCG
GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
CACTTTCACATTCATCACATGGACATTAGGCCTTATC
Found at i:36342533 original size:47 final size:48
Alignment explanation
Indices: 36342436--36342626 Score: 305
Period size: 49 Copynumber: 4.0 Consensus size: 48
36342426 AGGCCTTATC
36342436 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCA
1 TCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCA
* *
36342485 TCACATTGGCCATTCGGCCTTATCAC-ATATATACACTTTCACATTCA
1 TCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCA
36342532 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCA
1 TCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCA
* *
36342581 TCACAT-TGACATTAGGCCTTATCACATATATATACACTTTCACATT
1 TCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATT
36342627 TATTCAAATA
Statistics
Matches: 134, Mismatches: 6, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
47 45 0.34
48 38 0.28
49 51 0.38
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (48 bp):
TCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCA
Found at i:36342543 original size:96 final size:96
Alignment explanation
Indices: 36342436--36342626 Score: 339
Period size: 96 Copynumber: 2.0 Consensus size: 96
36342426 AGGCCTTATC
* *
36342436 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCG
1 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATT-GACATTAG
36342501 GCCTTATCAC-ATATATACACTTTCACATTCA
65 GCCTTATCACAATATATACACTTTCACATTCA
36342532 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGACATTAGG
1 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGACATTAGG
36342597 CCTTATCACATATATATACACTTTCACATT
66 CCTTATCACA-ATATATACACTTTCACATT
36342627 TATTCAAATA
Statistics
Matches: 91, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
95 16 0.18
96 56 0.62
97 19 0.21
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (96 bp):
TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGACATTAGG
CCTTATCACAATATATACACTTTCACATTCA
Found at i:36348348 original size:28 final size:28
Alignment explanation
Indices: 36348315--36348370 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
36348305 TTCAATCCAC
36348315 ATGAAAATATACTCATTAAGCTTCAATT
1 ATGAAAATATACTCATTAAGCTTCAATT
36348343 ATGAAAATATACTCATTAAGCTTCAATT
1 ATGAAAATATACTCATTAAGCTTCAATT
36348371 TTATAACTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (28 bp):
ATGAAAATATACTCATTAAGCTTCAATT
Found at i:36349184 original size:46 final size:46
Alignment explanation
Indices: 36349117--36349238 Score: 181
Period size: 46 Copynumber: 2.7 Consensus size: 46
36349107 CACCCCTAAG
* * *
36349117 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
**
36349163 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
* *
36349209 TGAATTCAGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
36349239 TGCTCAACCA
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 69 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
Found at i:36349695 original size:30 final size:30
Alignment explanation
Indices: 36349661--36349720 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
36349651 ATTTAATATG
36349661 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
36349691 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
36349721 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:36357241 original size:5 final size:6
Alignment explanation
Indices: 36357228--36357274 Score: 76
Period size: 6 Copynumber: 7.5 Consensus size: 6
36357218 ATAATTTAAT
36357228 AAATAA AAATAA AAATCTAA AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAA
36357275 CATATAATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
6 33 0.85
8 6 0.15
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:36357307 original size:9 final size:9
Alignment explanation
Indices: 36357293--36357341 Score: 73
Period size: 9 Copynumber: 5.6 Consensus size: 9
36357283 TTTATACAAA
*
36357293 TAATTCAGT
1 TAATTCGGT
36357302 TAATTCGGT
1 TAATTCGGT
*
36357311 TAATTC-GA
1 TAATTCGGT
36357319 TAATTCGGT
1 TAATTCGGT
36357328 TAATTCGGT
1 TAATTCGGT
36357337 TAATT
1 TAATT
36357342 TTATACTTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
8 7 0.19
9 29 0.81
ACGTcount: A:0.29, C:0.10, G:0.16, T:0.45
Consensus pattern (9 bp):
TAATTCGGT
Found at i:36357322 original size:26 final size:26
Alignment explanation
Indices: 36357292--36357341 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
36357282 TTTTATACAA
36357292 ATAATTCAGTTAATTCGGTTAATTCG
1 ATAATTCAGTTAATTCGGTTAATTCG
*
36357318 ATAATTCGGTTAATTCGGTTAATT
1 ATAATTCAGTTAATTCGGTTAATT
36357342 TTATACTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.10, G:0.16, T:0.44
Consensus pattern (26 bp):
ATAATTCAGTTAATTCGGTTAATTCG
Found at i:36357324 original size:17 final size:17
Alignment explanation
Indices: 36357302--36357334 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
36357292 ATAATTCAGT
36357302 TAATTCGGTTAATTCGA
1 TAATTCGGTTAATTCGA
36357319 TAATTCGGTTAATTCG
1 TAATTCGGTTAATTCG
36357335 GTTAATTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.42
Consensus pattern (17 bp):
TAATTCGGTTAATTCGA
Found at i:36390514 original size:50 final size:50
Alignment explanation
Indices: 36390452--36390555 Score: 192
Period size: 50 Copynumber: 2.1 Consensus size: 50
36390442 ATCACCTAGG
*
36390452 AAAA-GATGTTTCACACATATCCAACTTTCATATTCCTCCATAATCCATC
1 AAAATGATGTTTCACACATATCCAACTTTCATATTCCTCAATAATCCATC
36390501 AAAATGATGTTTCACACATATCCAACTTTCATATTCCTCAATAATCCATC
1 AAAATGATGTTTCACACATATCCAACTTTCATATTCCTCAATAATCCATC
36390551 AAAAT
1 AAAAT
36390556 ACAAGTAACT
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 4 0.08
50 49 0.92
ACGTcount: A:0.38, C:0.26, G:0.04, T:0.33
Consensus pattern (50 bp):
AAAATGATGTTTCACACATATCCAACTTTCATATTCCTCAATAATCCATC
Found at i:36396633 original size:29 final size:29
Alignment explanation
Indices: 36396601--36396706 Score: 167
Period size: 29 Copynumber: 3.7 Consensus size: 29
36396591 AATCATATTC
36396601 ATATGGCCCATTAGGCCCAAATCACCTGA
1 ATATGGCCCATTAGGCCCAAATCACCTGA
36396630 ATATGGCCCATTAGGCCCAAATCACCTGA
1 ATATGGCCCATTAGGCCCAAATCACCTGA
* **
36396659 ATATGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACCTGA
* *
36396688 GTATGGCCCGTTAGGCCCA
1 ATATGGCCCATTAGGCCCA
36396707 GTCACATTCA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACCTGA
Found at i:36401151 original size:28 final size:29
Alignment explanation
Indices: 36401119--36401233 Score: 135
Period size: 29 Copynumber: 4.0 Consensus size: 29
36401109 TACCTGTATC
* *
36401119 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* **
36401147 TGGCCCATTAGGCCCAAATCACCTGAATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
36401176 TGGCCTATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
36401205 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
36401233 T
1 T
36401234 TCATGCTCAC
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 26 0.36
29 47 0.64
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:36401216 original size:58 final size:57
Alignment explanation
Indices: 36401110--36401220 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 57
36401100 AAATTCACAT
* * *
36401110 ACCTGTATCTGGCCCATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGAATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
* * * *
36401167 ACCTGAATATGGCCTATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTGAATATGGCCCATTAAGCCC-AATCACATTCATATGGCCCATTAGGCCCA
36401221 GTCACATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 20 0.43
58 26 0.57
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (57 bp):
ACCTGAATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:36403740 original size:47 final size:46
Alignment explanation
Indices: 36403684--36403857 Score: 140
Period size: 47 Copynumber: 3.7 Consensus size: 46
36403674 ATCTCATGTT
*
36403684 GATGCCATGTCCTAGACATGGTCTGACACTAACTATCATATCGTAGCC
1 GATGCCATGTCCTAGACAT-GTCTGACACTAGCTATCATAT-GTAGCC
* * * * *
36403732 GATG-CATGTCCCAAACATGTCTGACACTAGC-ACTCGTCTTGATA-CT
1 GATGCCATGTCCTAGACATGTCTGACACTAGCTA-TCAT-ATG-TAGCC
* * * *
36403778 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAATGTGGTC
1 GATGCCATGTCCTAGACAT-GTCTGACACTAGCTATCAT-ATGTAGCC
* * *
36403826 AATG-CATGTCCAAGACATGTCTTACACTAGCT
1 GATGCCATGTCCTAGACATGTCTGACACTAGCT
36403858 CACAATAACC
Statistics
Matches: 101, Mismatches: 18, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
45 1 0.01
46 35 0.35
47 41 0.41
48 24 0.24
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.29
Consensus pattern (46 bp):
GATGCCATGTCCTAGACATGTCTGACACTAGCTATCATATGTAGCC
Found at i:36403807 original size:94 final size:94
Alignment explanation
Indices: 36403683--36403856 Score: 253
Period size: 94 Copynumber: 1.9 Consensus size: 94
36403673 TATCTCATGT
*
36403683 TGATGCCATGTCCTAGACATGGTCTGACACTAACTATCAT-ATCGTAGCCGATGCATGTCCCAA-
1 TGATGCCATGTCCTAGACATGGTCTGACACTAACTATCATAAT-GTAGCCAATGCATGT-CCAAG
36403746 ACATGTCTGACACTAGCACTCGTCTTGATAC
64 ACATGTCTGACACTAGCACTCGTCTTGATAC
* * * * *
36403777 TGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAATGTGGTCAATGCATGTCCAAGAC
1 TGATGCCATGTCCTAGACATGGTCTGACACTAACTATCATAATGTAGCCAATGCATGTCCAAGAC
*
36403842 ATGTCTTACACTAGC
66 ATGTCTGACACTAGC
36403857 TCACAATAAC
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
93 4 0.06
94 65 0.92
95 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.29
Consensus pattern (94 bp):
TGATGCCATGTCCTAGACATGGTCTGACACTAACTATCATAATGTAGCCAATGCATGTCCAAGAC
ATGTCTGACACTAGCACTCGTCTTGATAC
Found at i:36420912 original size:47 final size:48
Alignment explanation
Indices: 36420838--36421014 Score: 222
Period size: 47 Copynumber: 3.8 Consensus size: 48
36420828 AGTAAGGTGC
36420838 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTC-AAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAAGT
* *
36420885 CGATGCCATGTCCCAGACATGGCCTTACACTGACT-ATCATCTCGTAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCG-AAGT
* * * *
36420934 -GATG-CATGTCCCAGACAT-GTCTTACACTAGCAC-TAGTCTCGATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATA-TCTCGAAGT
*
36420979 CGATACCATGTCCCAGACATGGTCTTACACTGGCTC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC
36421015 TCATAATGTG
Statistics
Matches: 111, Mismatches: 11, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
45 3 0.03
46 21 0.19
47 66 0.59
48 17 0.15
49 4 0.04
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAAGT
Found at i:36421006 original size:94 final size:92
Alignment explanation
Indices: 36420839--36421058 Score: 248
Period size: 94 Copynumber: 2.3 Consensus size: 92
36420829 GTAAGGTGCC
* * * *
36420839 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAGACA
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACATATCTCAAGCCGATACCATGTCCCAGACA
*
36420904 TGGCCTTACACTGACTATCAT-CTCGTAAGT-
64 TGGCCTTACACTGACTATCATAAT-GT--GTA
*
36420934 GATGCATGTCCCAGACATGTCTTACACTAGCAC-TAGTCTCGATGCCGATACCATGTCCCAGACA
1 GATGCATGTCCCAGACATGTCTTACACTAGCACATA-TCTC-AAGCCGATACCATGTCCCAGACA
* * *
36420998 TGGTCTTACACTGGCTCTCATAATGTGTA
64 TGGCCTTACACTGACTATCATAATGTGTA
* *
36421027 CGATGCATGTCCCCGACATGTGTTACACTAGC
1 -GATGCATGTCCCAGACATGTCTTACACTAGC
36421059 TCACAATAAC
Statistics
Matches: 109, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
92 4 0.04
93 17 0.16
94 83 0.76
95 5 0.05
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACATATCTCAAGCCGATACCATGTCCCAGACATG
GCCTTACACTGACTATCATAATGTGTA
Found at i:36421036 original size:47 final size:47
Alignment explanation
Indices: 36420838--36421060 Score: 178
Period size: 47 Copynumber: 4.7 Consensus size: 47
36420828 AGTAAGGTGC
36420838 CGATGCCATGTCCCAGACATGGTCTTACACTGG--CTCATATC-TCAAGT
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGT--AGT
* * * *
36420885 CGATGCCATGTCCCAGACATGGCCTTACACTGACTATCATCTCGTAAGT
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGT-AGT
* * * *
36420934 -GATGCATGTCCCAGACAT-GTCTTACACTAGCACT-AGTCTCG-ATGC
1 CGATGCATGTCCCAGACATGGTCTTACACTGGCTCTCA-TATCGTA-GT
*
36420979 CGATACCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GT-GT
1 CGAT-GCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATCGTAGT
* * *
36421026 ACGATGCATGTCCCCGACAT-GTGTTACACTAGCTC
1 -CGATGCATGTCCCAGACATGGTCTTACACTGGCTC
36421061 ACAATAACCC
Statistics
Matches: 145, Mismatches: 19, Indels: 25
0.77 0.10 0.13
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 32 0.22
47 73 0.50
48 24 0.17
49 12 0.08
50 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
CGATGCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTAGT
Found at i:36424612 original size:14 final size:14
Alignment explanation
Indices: 36424593--36424620 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
36424583 CTAGGCTCGA
36424593 AAAATGAAATTCTT
1 AAAATGAAATTCTT
36424607 AAAATGAAATTCTT
1 AAAATGAAATTCTT
36424621 GAAGTTTACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (14 bp):
AAAATGAAATTCTT
Found at i:36427212 original size:4 final size:4
Alignment explanation
Indices: 36427205--36427244 Score: 80
Period size: 4 Copynumber: 10.0 Consensus size: 4
36427195 TACATAACAC
36427205 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
36427245 GGTAATAGAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
ATTT
Done.