Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 113 of 333
Found at i:36428385 original size:22 final size:21
Alignment explanation
Indices: 36428359--36428404 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
36428349 CTTCCTTTAT
* *
36428359 AATTATCATATATATTAATTAA
1 AATTATAAAATATATTAA-TAA
*
36428381 AATTATAAAATATCTTAATAA
1 AATTATAAAATATATTAATAA
36428402 AAT
1 AAT
36428405 ATTAATTACA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.41
Consensus pattern (21 bp):
AATTATAAAATATATTAATAA
Found at i:36430784 original size:25 final size:25
Alignment explanation
Indices: 36430743--36430804 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
36430733 CAGGCCCATT
* *
36430743 TTCACAGCTTGTGTGAGCATTCTGA
1 TTCACAGCTCGTATGAGCATTCTGA
* *
36430768 TTCGCAGCTCGTATGAGCATTTTGA
1 TTCACAGCTCGTATGAGCATTCTGA
36430793 TTCACAGCTCGT
1 TTCACAGCTCGT
36430805 GTGAACATAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (25 bp):
TTCACAGCTCGTATGAGCATTCTGA
Found at i:36432077 original size:17 final size:17
Alignment explanation
Indices: 36432051--36432097 Score: 76
Period size: 17 Copynumber: 2.8 Consensus size: 17
36432041 ATCTGACAAA
36432051 GCCCGATCAATGATAAT
1 GCCCGATCAATGATAAT
*
36432068 GCCTGATCAATGATAAT
1 GCCCGATCAATGATAAT
*
36432085 GCCCGATAAATGA
1 GCCCGATCAATGA
36432098 GAAATGATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.23
Consensus pattern (17 bp):
GCCCGATCAATGATAAT
Found at i:36432362 original size:44 final size:44
Alignment explanation
Indices: 36432294--36432407 Score: 156
Period size: 44 Copynumber: 2.6 Consensus size: 44
36432284 TGTTGCTGAT
* * * * * * *
36432294 AGGATTTAGCTCGAACGAGCAATCCTATTTACCTCATTACAGAA
1 AGGATTTAGCCCGGACGGGTAATCCTACTGACCTCATGACAGAA
36432338 AGGATTTAGCCCGGACGGGTAATCCTACTGACCTCATGACAGAA
1 AGGATTTAGCCCGGACGGGTAATCCTACTGACCTCATGACAGAA
*
36432382 AGGATTTAGCCCAGACGGGTAATCCT
1 AGGATTTAGCCCGGACGGGTAATCCT
36432408 GATATAAGTC
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 62 1.00
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.24
Consensus pattern (44 bp):
AGGATTTAGCCCGGACGGGTAATCCTACTGACCTCATGACAGAA
Found at i:36433417 original size:30 final size:30
Alignment explanation
Indices: 36433382--36433438 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
36433372 TTTACGAGCC
36433382 TAGGGGCAAAAA-TGTAATTTTGACAAAGTT
1 TAGGGG-AAAAATTGTAATTTTGACAAAGTT
*
36433412 TAGGGGAAAAATTGTAATTTTGCCAAA
1 TAGGGGAAAAATTGTAATTTTGACAAA
36433439 ATATGATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAATTGTAATTTTGACAAAGTT
Found at i:36440997 original size:20 final size:20
Alignment explanation
Indices: 36440970--36441037 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
36440960 ATGCGATCAC
36440970 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
*
36440990 ATACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
* *
36441010 ACATGCCCATGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
36441030 ACACGCCC
1 ACACGCCC
36441038 ATGTACTCAG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.13, C:0.31, G:0.35, T:0.21
Consensus pattern (20 bp):
ACACGCCCGTGTGGCTTGGG
Found at i:36445153 original size:10 final size:10
Alignment explanation
Indices: 36445138--36445172 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
36445128 TTATGTATTC
36445138 TAATTAAATT
1 TAATTAAATT
36445148 TAATTAAATAT
1 TAATTAAAT-T
*
36445159 TAAATAAATT
1 TAATTAAATT
36445169 TAAT
1 TAAT
36445173 ACATTTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
TAATTAAATT
Found at i:36445384 original size:16 final size:17
Alignment explanation
Indices: 36445363--36445400 Score: 69
Period size: 16 Copynumber: 2.3 Consensus size: 17
36445353 TACCAACGAA
36445363 AATTTATAGTTGTTTC-
1 AATTTATAGTTGTTTCG
36445379 AATTTATAGTTGTTTCG
1 AATTTATAGTTGTTTCG
36445396 AATTT
1 AATTT
36445401 CGAAATGGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.26, C:0.05, G:0.13, T:0.55
Consensus pattern (17 bp):
AATTTATAGTTGTTTCG
Found at i:36445586 original size:21 final size:20
Alignment explanation
Indices: 36445549--36445590 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
36445539 TTACATTCAA
36445549 TACTCATTTAATATTAAAAT
1 TACTCATTTAATATTAAAAT
* * *
36445569 TACTTATTTTATATTTAAAT
1 TACTCATTTAATATTAAAAT
36445589 TA
1 TA
36445591 TTTTTAACAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.52
Consensus pattern (20 bp):
TACTCATTTAATATTAAAAT
Found at i:36446254 original size:4 final size:4
Alignment explanation
Indices: 36446245--36446297 Score: 88
Period size: 4 Copynumber: 13.2 Consensus size: 4
36446235 TGGGATTGGA
* *
36446245 ACAT ACAT ACGT ACAT ACAT ACAT ACAT AAAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
36446293 ACAT A
1 ACAT A
36446298 TGTATGTATA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 45 1.00
ACGTcount: A:0.51, C:0.23, G:0.02, T:0.25
Consensus pattern (4 bp):
ACAT
Found at i:36446738 original size:2 final size:2
Alignment explanation
Indices: 36446731--36446769 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
36446721 CAAATGCATA
36446731 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
36446770 AACCTAATAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:36471392 original size:80 final size:79
Alignment explanation
Indices: 36471192--36471409 Score: 296
Period size: 80 Copynumber: 2.7 Consensus size: 79
36471182 GGACTAAGAT
*
36471192 CCGAAGGCATTTGTGCGAGA-TACTAATTCCAGGCTAAG-CCCGAAGGCATTTGTACGAGTTACT
1 CCGAAGGCATTTGTGCGA-ATTACTAA-ACCAGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
36471255 AAATCCGGGTTAAGTC
64 AAATCCGGGTTAAGTC
* * *
36471271 CCGAAGGCATTTGTGCGAGTTACTAAATCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAATTACTAAA-CCAGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTA
36471336 AATCCGGGTTAAGTC
65 AATCCGGGTTAAGTC
** * * * *
36471351 CCGAAGGCATTTGTGCGAATTACTATAACTGGGCTATGTCCCAAAGGCATATGAACGAG
1 CCGAAGGCATTTGTGCGAATTACTA-AACCAGGCTAAGTCCCGAAGGCATTTGTACGAG
36471410 GAGCTATATC
Statistics
Matches: 122, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
79 33 0.27
80 87 0.71
81 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAATTACTAAACCAGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:36471400 original size:40 final size:40
Alignment explanation
Indices: 36471140--36471375 Score: 302
Period size: 40 Copynumber: 6.0 Consensus size: 40
36471130 TTGAATGCTG
* * *
36471140 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
** * *
36471179 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
36471219 TCCAGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
36471258 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36471298 TCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
36471338 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
36471376 TAACTGGGCT
Statistics
Matches: 175, Mismatches: 16, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
39 51 0.29
40 116 0.66
41 8 0.05
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36471421 original size:80 final size:80
Alignment explanation
Indices: 36471192--36471436 Score: 266
Period size: 80 Copynumber: 3.1 Consensus size: 80
36471182 GGACTAAGAT
* * * * *
36471192 CCGAAGGCATTTGTGCGAGA-TACTAATTCCAGGCTAAG-CCCGAAGGCATTTGTACGAGTTACT
1 CCGAAGGCATTTGTGCGA-ATTACTAAATCCAGGCTAAGTCCCAAAGGCATATGAACGAGTGACT
36471255 AAATCCGGGTTAAGTC
65 AAATCCGGGTTAAGTC
* * * * ** *
36471271 CCGAAGGCATTTGTGCGAGTTACTAAATCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAATTACTAAATCCAGGCTAAGTCCCAAAGGCATATGAACGAGTGACTA
36471336 AATCCGGGTTAAGTC
66 AATCCGGGTTAAGTC
** *
36471351 CCGAAGGCATTTGTGCGAATTACTATAA-CTGGGCTATGTCCCAAAGGCATATGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAATTACTA-AATCCAGGCTAAGTCCCAAAGGCATATGAACGAGTGA-C
* * *
36471414 TATATCC-GGTTAAATT
64 TAAATCCGGGTTAAGTC
36471430 CCGAAGG
1 CCGAAGG
36471437 TACGTGATTT
Statistics
Matches: 145, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
79 49 0.34
80 94 0.65
81 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTTGTGCGAATTACTAAATCCAGGCTAAGTCCCAAAGGCATATGAACGAGTGACTA
AATCCGGGTTAAGTC
Found at i:36475999 original size:40 final size:40
Alignment explanation
Indices: 36475937--36476235 Score: 399
Period size: 40 Copynumber: 7.5 Consensus size: 40
36475927 AAGCCAAGTA
* * *
36475937 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
36475976 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
36476016 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
36476056 CCTTCGAGACTTTGCCCGGATATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
36476096 CCTTCGGGACTTAGGCCGGATATAGTAACTCACACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
36476136 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
36476176 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
36476217 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
36476236 TTATCATCCA
Statistics
Matches: 233, Mismatches: 22, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
39 12 0.05
40 193 0.83
41 24 0.10
42 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:36483345 original size:39 final size:40
Alignment explanation
Indices: 36483228--36483450 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
36483218 GCTCCTCGTT
* *
36483228 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
36483268 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
36483308 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
36483347 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
36483386 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
36483427 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36483451 CATCATTCAA
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 62 0.38
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:36483405 original size:79 final size:80
Alignment explanation
Indices: 36483228--36483450 Score: 255
Period size: 79 Copynumber: 2.8 Consensus size: 80
36483218 GCTCCTCGTT
* * * *
36483228 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTTGGGACTTAACCC
1 CAAATGCCTTC-GGACTTAGCCCGGAAT-TAGTAATCTCGCACAAATGCCTTCGGGACTTAGCCC
*
36483291 GGATTTAGTAACTCGCA
64 GGAATTAGTAACTCGCA
*
36483308 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGACTTAGCCCGGAATTAGTAATCTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
36483371 AATTAGTATCTCGCA
66 AATTAGTAACTCGCA
* * *
36483386 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCAC-AA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCACAAATGCCTTCGGGACTTAGCC
36483447 CGGA
63 CGGA
36483451 CATCATTCAA
Statistics
Matches: 126, Mismatches: 10, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 46 0.37
79 59 0.47
80 21 0.17
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGACTTAGCCCGGAATTAGTAATCTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:36491286 original size:79 final size:78
Alignment explanation
Indices: 36491184--36491406 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
36491174 GCTCCTCGTT
* *
36491184 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
36491249 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
36491264 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
36491327 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
36491342 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
36491405 GA
63 GA
36491407 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:36491301 original size:39 final size:40
Alignment explanation
Indices: 36491184--36491406 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
36491174 GCTCCTCGTT
* *
36491184 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
36491224 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
36491264 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
36491303 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
36491342 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
36491383 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36491407 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:36499266 original size:79 final size:78
Alignment explanation
Indices: 36499164--36499386 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
36499154 GCTCCTCGTT
* *
36499164 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
36499229 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
36499244 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
36499307 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
36499322 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
36499385 GA
63 GA
36499387 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:36499281 original size:39 final size:40
Alignment explanation
Indices: 36499164--36499386 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
36499154 GCTCCTCGTT
* *
36499164 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
36499204 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
36499244 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
36499283 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
36499322 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
36499363 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36499387 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:36501605 original size:27 final size:27
Alignment explanation
Indices: 36501575--36501675 Score: 114
Period size: 27 Copynumber: 3.7 Consensus size: 27
36501565 ATTCTGTTAA
* *
36501575 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
*
36501602 GTGGCTACGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* *
36501629 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * *
36501656 GTGACTCTGTCACAATATCT
1 GTGGCTATGCCACAATATCT
36501676 AATAACTGAG
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 8 0.12
27 49 0.77
28 7 0.11
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:36501893 original size:31 final size:31
Alignment explanation
Indices: 36501813--36501886 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
36501803 TTGTATTCAC
* *
36501813 ATTTTGATTTTTGATTCTGTTACCTGATACTG
1 ATTTTGA-TTCTGATTCTGTCACCTGATACTG
* **
36501845 ATTCTGATTCTGATTCTGTCACCTGATTTTG
1 ATTTTGATTCTGATTCTGTCACCTGATACTG
36501876 ATTTTGATTCT
1 ATTTTGATTCT
36501887 AGTTCTGATA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
31 30 0.83
32 6 0.17
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.53
Consensus pattern (31 bp):
ATTTTGATTCTGATTCTGTCACCTGATACTG
Found at i:36515805 original size:11 final size:11
Alignment explanation
Indices: 36515789--36515831 Score: 50
Period size: 11 Copynumber: 3.6 Consensus size: 11
36515779 AAGTAATTTT
36515789 TCAATTCAATC
1 TCAATTCAATC
*
36515800 TCAATTCTAATTTT
1 TCAATTC-AA--TC
36515814 TCAATTCAATC
1 TCAATTCAATC
36515825 TCAATTC
1 TCAATTC
36515832 TAACCTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
11 15 0.56
12 2 0.07
13 2 0.07
14 8 0.30
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.44
Consensus pattern (11 bp):
TCAATTCAATC
Found at i:36515846 original size:30 final size:25
Alignment explanation
Indices: 36515782--36515834 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
36515772 TCTAGTTAAG
36515782 TAATTTTTCAATTCAATCTCAATTC
1 TAATTTTTCAATTCAATCTCAATTC
36515807 TAATTTTTCAATTCAATCTCAATTC
1 TAATTTTTCAATTCAATCTCAATTC
36515832 TAA
1 TAA
36515835 CCTTTTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (25 bp):
TAATTTTTCAATTCAATCTCAATTC
Found at i:36528628 original size:46 final size:46
Alignment explanation
Indices: 36528566--36528886 Score: 439
Period size: 46 Copynumber: 7.0 Consensus size: 46
36528556 AGTGTGCTCT
36528566 CTGATA-GAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
36528612 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
36528658 CTGATATGAAATGTGTAAGACCGTGGTTGAAAGATACCATGGCGAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
36528704 CTGATATGAAACGTGTAAGACCATGATTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
36528750 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** ** *
36528796 GTGACGGGGAAATGAATAAGACCATGGTTGAATGATACCATGGCAAC
1 CTGA-TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
36528843 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
36528887 TCATGTCGAA
Statistics
Matches: 247, Mismatches: 25, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
45 1 0.00
46 206 0.83
47 40 0.16
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:36533171 original size:46 final size:46
Alignment explanation
Indices: 36533104--36533195 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
36533094 GATATACACA
*
36533104 TTACCAAACGTATTCACAAACTTCTAGCCTATACATGCCATACTTC
1 TTACCAAACATATTCACAAACTTCTAGCCTATACATGCCATACTTC
36533150 TTACCAAACATATTCACAAACTTCTAGCCTATACATGCCATACTTC
1 TTACCAAACATATTCACAAACTTCTAGCCTATACATGCCATACTTC
36533196 AATATATACA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.34, C:0.30, G:0.05, T:0.30
Consensus pattern (46 bp):
TTACCAAACATATTCACAAACTTCTAGCCTATACATGCCATACTTC
Found at i:36534787 original size:100 final size:102
Alignment explanation
Indices: 36534655--36534844 Score: 285
Period size: 102 Copynumber: 1.9 Consensus size: 102
36534645 AAAGCTATCT
* *
36534655 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCGGTACACGTAGTAG
1 GGTATGCATAGTAGCCTGCACTTAGTACTACACACGCGATCCAAGTTATCCGGTACACATAGTAG
36534718 CCTGCACTTAGTACTACACACGTGATCGAAGTTATTA
66 CCTGCACTTAGTACTACACACGTGATCGAAGTTATTA
* * * * * *
36534755 GGTATGCATAGTAGCCTGCATTTAGTAGTACACACGTGATCGAAGTTATCGGGTACGCATAGTAG
1 GGTATGCATAGTAGCCTGCACTTAGTACTACACACGCGATCCAAGTTATCCGGTACACATAGTAG
*
36534820 CCTGCACTTAGTGCTACACACGTGA
66 CCTGCACTTAGTACTACACACGTGA
36534845 CCTCACAATA
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
100 35 0.44
101 3 0.04
102 41 0.52
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (102 bp):
GGTATGCATAGTAGCCTGCACTTAGTACTACACACGCGATCCAAGTTATCCGGTACACATAGTAG
CCTGCACTTAGTACTACACACGTGATCGAAGTTATTA
Found at i:36534788 original size:51 final size:51
Alignment explanation
Indices: 36534650--36534844 Score: 250
Period size: 51 Copynumber: 3.9 Consensus size: 51
36534640 TAGCCAAAGC
* * * * *
36534650 TATCTGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-T
1 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
* * *
36534699 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
* * * *
36534750 TATTAGGTATGCATAGTAGCCTGCATTTAGTAGTACACACGTGATCGAAGT
1 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
* *
36534801 TATCGGGTACGCATAGTAGCCTGCACTTAGTGCTACACACGTGA
1 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGA
36534845 CCTCACAATA
Statistics
Matches: 124, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
49 38 0.31
50 3 0.02
51 83 0.67
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (51 bp):
TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
Found at i:36536353 original size:43 final size:43
Alignment explanation
Indices: 36536287--36536442 Score: 131
Period size: 43 Copynumber: 3.6 Consensus size: 43
36536277 AGCTCGTACA
*
36536287 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACAGGGTCTTACATGTAATCAAATATCG
*** *
36536330 ATGCC-ACTGTCCCAGACAGGGTCTTACACAAAATCATATAT-G
1 ATGCCAAC-GTCCCAGACAGGGTCTTACATGTAATCAAATATCG
* * * * * * *
36536372 ATGTCGATGTCCCAAATATGGTCTTACATGTAAATCATAA-GTCG
1 ATGCCAACGTCCCAGACAGGGTCTTACATGT-AATCA-AATATCG
*
36536416 ATGCCAACGTCCTAGAC-GTGGTCTTAC
1 ATGCCAACGTCCCAGACAG-GGTCTTAC
36536443 GCGAAAACAC
Statistics
Matches: 85, Mismatches: 22, Indels: 11
0.72 0.19 0.09
Matches are distributed among these distances:
42 24 0.28
43 40 0.47
44 21 0.25
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACATGTAATCAAATATCG
Found at i:36539928 original size:24 final size:24
Alignment explanation
Indices: 36539900--36539946 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
36539890 ACACATATTC
*
36539900 AATTCAATC-AATACAAATTCAATA
1 AATTC-ATCAAATACAAAATCAATA
36539924 AATTCATCAAATACAAAATCAAT
1 AATTCATCAAATACAAAATCAAT
36539947 CCATTTAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 3 0.14
24 18 0.86
ACGTcount: A:0.55, C:0.17, G:0.00, T:0.28
Consensus pattern (24 bp):
AATTCATCAAATACAAAATCAATA
Found at i:36546161 original size:28 final size:28
Alignment explanation
Indices: 36546129--36546194 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
36546119 ACAGTGCATG
*
36546129 CAGTAACAGTCTGGGCCTTAGCCCT-ATA
1 CAGTAACAGTCTGGGCCTAAG-CCTAATA
* *
36546157 CAGTAATAGTGTGGGCCTAAGCCTAATA
1 CAGTAACAGTCTGGGCCTAAGCCTAATA
*
36546185 CAGTATCAGT
1 CAGTAACAGT
36546195 ACAATGTAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 3 0.09
28 29 0.91
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (28 bp):
CAGTAACAGTCTGGGCCTAAGCCTAATA
Found at i:36546380 original size:27 final size:27
Alignment explanation
Indices: 36546350--36546409 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
36546340 AGTTGCCAGA
*
36546350 AACAGTAAATGTGGCAAAGCCACCAAT
1 AACAGTAAATGTGACAAAGCCACCAAT
** * *
36546377 AACAGTGGATGTGACATAGTCACCAAT
1 AACAGTAAATGTGACAAAGCCACCAAT
36546404 -ACAGTA
1 AACAGTA
36546410 CTTCCTCCAT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 5 0.19
27 22 0.81
ACGTcount: A:0.42, C:0.20, G:0.20, T:0.18
Consensus pattern (27 bp):
AACAGTAAATGTGACAAAGCCACCAAT
Found at i:36551666 original size:20 final size:19
Alignment explanation
Indices: 36551643--36551686 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 19
36551633 TTGGCTCGTT
36551643 ATGGGCCACGT-TGGGCCACA
1 ATGGGCC-CGTGTGGGCC-CA
36551663 ATGGG-CCGTGTGGGCCCA
1 ATGGGCCCGTGTGGGCCCA
36551681 ATGGGC
1 ATGGGC
36551687 TCGCTGGACC
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 10 0.45
19 7 0.32
20 5 0.23
ACGTcount: A:0.16, C:0.27, G:0.41, T:0.16
Consensus pattern (19 bp):
ATGGGCCCGTGTGGGCCCA
Found at i:36552000 original size:27 final size:27
Alignment explanation
Indices: 36551926--36552000 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
36551916 CCCCAAAATA
* * *
36551926 GGTAAAATGACCATAATACCACTGTAG
1 GGTAAAATGACGATAATACCCCTATAG
* *
36551953 GGTAAAATGATTG-TAATACCCCTATAT
1 GGTAAAATGA-CGATAATACCCCTATAG
*
36551980 GGTAAAATGACGATTATACCC
1 GGTAAAATGACGATAATACCC
36552001 TTATGTTATG
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
26 1 0.03
27 38 0.97
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (27 bp):
GGTAAAATGACGATAATACCCCTATAG
Found at i:36552176 original size:27 final size:26
Alignment explanation
Indices: 36552127--36552178 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
36552117 TGGAGGAAGT
*
36552127 ACTATACTGGTGACTATGTCACATTC
1 ACTATACTGGTGACTATGCCACATTC
* *
36552153 ACTATTACTGGTGGCTTTGCCACATT
1 ACTA-TACTGGTGACTATGCCACATT
36552179 TACTGTTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (26 bp):
ACTATACTGGTGACTATGCCACATTC
Found at i:36552386 original size:28 final size:28
Alignment explanation
Indices: 36552341--36552438 Score: 79
Period size: 28 Copynumber: 3.3 Consensus size: 28
36552331 ATTACACTGT
* * * * *
36552341 ACTGATACTGTATTGGGCTTAGGCCCAC
1 ACTGTTACTATATAGGGCTAAGGCCCAA
36552369 ACTGTTACTATATAGGGCTAAGGCCCAA
1 ACTGTTACTATATAGGGCTAAGGCCCAA
* * *
36552397 ACTGTACTAATACTGAATAGGGCTCAGGCCCAG
1 ACTGT--TACTA-T--ATAGGGCTAAGGCCCAA
36552430 ACTGTTACT
1 ACTGTTACT
36552439 GCATGTACTG
Statistics
Matches: 56, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
28 28 0.50
30 4 0.07
31 4 0.07
33 20 0.36
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (28 bp):
ACTGTTACTATATAGGGCTAAGGCCCAA
Found at i:36555246 original size:40 final size:40
Alignment explanation
Indices: 36555128--36555264 Score: 154
Period size: 40 Copynumber: 3.5 Consensus size: 40
36555118 CGGATGATAA
* * * *
36555128 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * * *
36555168 TCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
36555208 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
36555248 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
36555265 ATACTTGGGT
Statistics
Matches: 80, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
38 1 0.01
39 15 0.19
40 62 0.77
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:36555532 original size:22 final size:22
Alignment explanation
Indices: 36555492--36555533 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
36555482 GAATGTGCAT
*
36555492 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
36555514 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
36555534 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:36563141 original size:40 final size:40
Alignment explanation
Indices: 36563023--36563159 Score: 154
Period size: 40 Copynumber: 3.5 Consensus size: 40
36563013 CGGATGATAA
* * * *
36563023 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * * *
36563063 TCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
36563103 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
36563143 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
36563160 ATACTTGGGT
Statistics
Matches: 80, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
38 1 0.01
39 15 0.19
40 62 0.77
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:36566777 original size:19 final size:19
Alignment explanation
Indices: 36566753--36566790 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
36566743 TGGACCACGT
36566753 TGGGCCAAAATGGGC-CATG
1 TGGGCC-AAATGGGCTCATG
*
36566772 TGGGCCCAATGGGCTCATG
1 TGGGCCAAATGGGCTCATG
36566791 GGACCCATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.21, C:0.24, G:0.37, T:0.18
Consensus pattern (19 bp):
TGGGCCAAATGGGCTCATG
Found at i:36567058 original size:26 final size:27
Alignment explanation
Indices: 36567026--36567089 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
36567016 CCTTAAAATA
36567026 GGTAAAATGACCAT-ATACTCC-TATAG
1 GGTAAAATGACCATAATAC-CCTTATAG
* * *
36567052 GGTAAAATGACCGTAATACCCTTGTAT
1 GGTAAAATGACCATAATACCCTTATAG
36567079 GGTAAAATGAC
1 GGTAAAATGAC
36567090 GATTATGTCC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 15 0.45
27 18 0.55
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.27
Consensus pattern (27 bp):
GGTAAAATGACCATAATACCCTTATAG
Found at i:36567469 original size:33 final size:30
Alignment explanation
Indices: 36567432--36567531 Score: 89
Period size: 33 Copynumber: 3.2 Consensus size: 30
36567422 TAATTGCATT
*
36567432 ACACTGTACTGATATTGTATTGGGCTTAGGCCC
1 ACACTGTACTGATA-T-TA-TGGGCTAAGGCCC
36567465 ACACTGTTACT-ATA-TA-GGGCTAAGGCCC
1 ACACTG-TACTGATATTATGGGCTAAGGCCC
* *
36567493 AGACTGTACTGTTACTATATAGGGCTAAGGCCC
1 ACACTGTACTGATA-T-TAT-GGGCTAAGGCCC
36567526 ACACTG
1 ACACTG
36567532 CACTATTTAC
Statistics
Matches: 56, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
27 4 0.07
28 18 0.32
30 2 0.04
31 2 0.04
33 26 0.46
34 4 0.07
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (30 bp):
ACACTGTACTGATATTATGGGCTAAGGCCC
Found at i:36567485 original size:28 final size:28
Alignment explanation
Indices: 36567453--36567531 Score: 104
Period size: 33 Copynumber: 2.6 Consensus size: 28
36567443 ATATTGTATT
*
36567453 GGGCTTAGGCCCACACTGTTACTATATA
1 GGGCTAAGGCCCACACTGTTACTATATA
36567481 GGGCTAAGGCCCAGACTGTACTGTTACTATATA
1 GGGCTAAGGCCC--AC---ACTGTTACTATATA
36567514 GGGCTAAGGCCCACACTG
1 GGGCTAAGGCCCACACTG
36567532 CACTATTTAC
Statistics
Matches: 45, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
28 15 0.33
30 2 0.04
31 2 0.04
33 26 0.58
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.24
Consensus pattern (28 bp):
GGGCTAAGGCCCACACTGTTACTATATA
Found at i:36569538 original size:44 final size:41
Alignment explanation
Indices: 36569490--36569606 Score: 119
Period size: 42 Copynumber: 2.7 Consensus size: 41
36569480 GTCTGGGATG
36569490 TTGGCATCGACTTATGATTTACGTGTAAGA-CTATGTCAGGGACA
1 TTGGCATCGA-TT-TGATTT-CGTGTAAGACCT-TGTCAGGGACA
* *
36569534 TTGGCATCGTATTTGATTTTGTGTAAGACCTTGTCTGGGACA
1 TTGGCATCG-ATTTGATTTCGTGTAAGACCTTGTCAGGGACA
* * *
36569576 GTGGCATCGATATTTGATTACATGTAAGACC
1 TTGGCATCG--ATTTGATTTCGTGTAAGACC
36569607 ACGTCTGGGA
Statistics
Matches: 64, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
42 26 0.41
43 26 0.41
44 11 0.17
45 1 0.02
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (41 bp):
TTGGCATCGATTTGATTTCGTGTAAGACCTTGTCAGGGACA
Found at i:36569574 original size:42 final size:42
Alignment explanation
Indices: 36569464--36569622 Score: 158
Period size: 43 Copynumber: 3.7 Consensus size: 42
36569454 TGGTATGTAT
* **
36569464 TTTCATGTAAGACCACGTCTGGGATGTTGGCATCG-ACTTATGA
1 TTTCGTGTAAGACCACGTCTGGGACATTGGCATCGTA-TT-TGA
* * *
36569507 TTTACGTGTAAGACTATGTCAGGGACATTGGCATCGTATTTGA
1 TTT-CGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGA
* ** *
36569550 TTTTGTGTAAGACCTTGTCTGGGACAGTGGCATCGATATTTGA
1 TTTCGTGTAAGACCACGTCTGGGACATTGGCATCG-TATTTGA
* * *
36569593 TTACATGTAAGACCACGTCTGGGACGTTGG
1 TTTCGTGTAAGACCACGTCTGGGACATTGG
36569623 GATTGTACAA
Statistics
Matches: 95, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
42 27 0.28
43 39 0.41
44 28 0.29
45 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.33
Consensus pattern (42 bp):
TTTCGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGA
Found at i:36572108 original size:25 final size:25
Alignment explanation
Indices: 36572087--36572179 Score: 93
Period size: 25 Copynumber: 3.8 Consensus size: 25
36572077 GTTCCAACCA
*
36572087 ATAACTCGTATGAGCATACCAATTT
1 ATAACTCGTATGAGCATACCAATCT
* **
36572112 ATAGCTCGT-TAGAGCATACTGATCT
1 ATAACTCGTAT-GAGCATACCAATCT
*
36572137 ATAACTCGTATGAGCATACCGAT-T
1 ATAACTCGTATGAGCATACCAATCT
*
36572161 ACAACTCGTAT-ATGCATAC
1 ATAACTCGTATGA-GCATAC
36572180 ATGTACATGA
Statistics
Matches: 58, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
23 1 0.02
24 18 0.31
25 38 0.66
26 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (25 bp):
ATAACTCGTATGAGCATACCAATCT
Found at i:36575676 original size:40 final size:39
Alignment explanation
Indices: 36575616--36575835 Score: 216
Period size: 40 Copynumber: 5.5 Consensus size: 39
36575606 TATTCGAATG
*
36575616 ATATCCAGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCC-GGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* *
36575656 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGG-CTAAGATCCGAAGGCATTTATGCTAG-TGACT
* *
36575696 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
1 ATATCC-GGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
36575736 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCC-GGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * * * **
36575776 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCC-GGCTAAGATCCGAAGGCATTTATGCTAGTGACT
36575815 ATATCCGGCTAA-ATCCCGAAG
1 ATATCCGGCTAAGAT-CCGAAG
36575836 ATACTTGGGT
Statistics
Matches: 155, Mismatches: 17, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
37 1 0.01
38 12 0.08
39 19 0.12
40 118 0.76
41 5 0.03
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:36575749 original size:80 final size:80
Alignment explanation
Indices: 36575616--36575835 Score: 279
Period size: 80 Copynumber: 2.8 Consensus size: 80
36575606 TATTCGAATG
* * *
36575616 ATATCCAGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCAGGCTAAGACCCGAAGGC-TTTGTGCTAGTGACTATATCCGGGCTAAGATCCCGAAGGC
* *
36575680 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
36575696 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAG-TCCCGAAGGC
1 ATATCCAGGCTAAGACCCGAAGGC-TTTGTGCTAGTGACTATATCCGGGCTAAGATCCCGAAGGC
*
36575760 ATTTATGCTAGTGACC
65 ATTTATGCGAGTGACC
* * * **
36575776 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GGCTAA-ATCCCGAAG
1 ATATCCAGGCTAAGACCCGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAGATCCCGAAG
36575836 ATACTTGGGT
Statistics
Matches: 125, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
78 14 0.11
79 20 0.16
80 91 0.73
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCAGGCTAAGACCCGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAGATCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:36579994 original size:51 final size:51
Alignment explanation
Indices: 36579917--36580115 Score: 301
Period size: 51 Copynumber: 3.9 Consensus size: 51
36579907 CGGATACACG
* * *
36579917 GTGGCCTTCACATAGCACCACCCTTGTAG-CCAAAACTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTCACAAA
36579968 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
* * * *
36580019 GTGGCCTTCACATAGAACCACACTTGGGCCCAAAGCTATTATATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
* *
36580070 GTGGCCTTCCCATAGTACCACTCTTGTGTCCAAAGCTATTTTATTC
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
36580116 CTAAGGTTCA
Statistics
Matches: 134, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
50 1 0.01
51 133 0.99
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.30
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
Found at i:36580195 original size:52 final size:52
Alignment explanation
Indices: 36580139--36580256 Score: 200
Period size: 52 Copynumber: 2.3 Consensus size: 52
36580129 GGAAAATTTC
36580139 TCACTTAGCACAATGCAATGGACTTATTTCACTTAGATGCCATGGACTTATT
1 TCACTTAGCACAATGCAATGGACTTATTTCACTTAGATGCCATGGACTTATT
* * * *
36580191 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGTCATGGTCTTATT
1 TCACTTAGCACAATGCAATGGACTTATTTCACTTAGATGCCATGGACTTATT
36580243 TCACTTAGCACAAT
1 TCACTTAGCACAAT
36580257 TTCGTATCCT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 61 1.00
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.36
Consensus pattern (52 bp):
TCACTTAGCACAATGCAATGGACTTATTTCACTTAGATGCCATGGACTTATT
Found at i:36580216 original size:28 final size:27
Alignment explanation
Indices: 36580139--36580254 Score: 145
Period size: 24 Copynumber: 4.4 Consensus size: 27
36580129 GGAAAATTTC
*
36580139 TCACTTAGCACAATGCAATGGACTTATT
1 TCACTTAGCAC-ATGCCATGGACTTATT
36580167 TCACTTAG---ATGCCATGGACTTATT
1 TCACTTAGCACATGCCATGGACTTATT
36580191 TCACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACA-TGCCATGGACTTATT
* *
36580219 TCACTTAG---ATGTCATGGTCTTATT
1 TCACTTAGCACATGCCATGGACTTATT
36580243 TCACTTAGCACA
1 TCACTTAGCACA
36580255 ATTTCGTATC
Statistics
Matches: 78, Mismatches: 3, Indels: 15
0.81 0.03 0.16
Matches are distributed among these distances:
24 44 0.56
25 1 0.01
27 2 0.03
28 31 0.40
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (27 bp):
TCACTTAGCACATGCCATGGACTTATT
Found at i:36583906 original size:24 final size:26
Alignment explanation
Indices: 36583879--36583927 Score: 75
Period size: 24 Copynumber: 1.9 Consensus size: 26
36583869 AGTTCATGCA
36583879 ATATTAAAGC-ATTTAA-ATACAATT
1 ATATTAAAGCTATTTAACATACAATT
36583903 ATATTAAAGCTTATTTAACATACAA
1 ATATTAAAGC-TATTTAACATACAA
36583928 ACTTACCTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 10 0.45
26 6 0.27
27 6 0.27
ACGTcount: A:0.49, C:0.10, G:0.04, T:0.37
Consensus pattern (26 bp):
ATATTAAAGCTATTTAACATACAATT
Found at i:36586334 original size:25 final size:25
Alignment explanation
Indices: 36586306--36586388 Score: 103
Period size: 25 Copynumber: 3.3 Consensus size: 25
36586296 TCATGTACAT
36586306 GTATGCTCACACGAGCTGTAGATCA
1 GTATGCTCACACGAGCTGTAGATCA
* * * * *
36586331 GTATGCTCTCATGAGCTATAAATCG
1 GTATGCTCACACGAGCTGTAGATCA
* *
36586356 GTATACTTACACGAGCTGTAGATCA
1 GTATGCTCACACGAGCTGTAGATCA
36586381 GTATGCTC
1 GTATGCTC
36586389 TTGCGAGCTA
Statistics
Matches: 44, Mismatches: 14, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (25 bp):
GTATGCTCACACGAGCTGTAGATCA
Found at i:36586418 original size:50 final size:50
Alignment explanation
Indices: 36586306--36586420 Score: 158
Period size: 50 Copynumber: 2.3 Consensus size: 50
36586296 TCATGTACAT
*
36586306 GTATGCTCACACGAGCTGTAGATCAGTATGCTCTCATGAGCTATAAATCG
1 GTATGCTCACACGAGCTGTAGATCAGTATGCTCTCACGAGCTATAAATCG
* * ** * *
36586356 GTATACTTACACGAGCTGTAGATCAGTATGCTCTTGCGAGCTATATATTG
1 GTATGCTCACACGAGCTGTAGATCAGTATGCTCTCACGAGCTATAAATCG
*
36586406 GTATGGTCACACGAG
1 GTATGCTCACACGAG
36586421 TTATGGGTCA
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (50 bp):
GTATGCTCACACGAGCTGTAGATCAGTATGCTCTCACGAGCTATAAATCG
Found at i:36588261 original size:22 final size:22
Alignment explanation
Indices: 36588236--36588279 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
36588226 GGGAGAAATC
36588236 TATACGTACCAGAATAAAATGT
1 TATACGTACCAGAATAAAATGT
36588258 TATACGTACCAGAATAAAATGT
1 TATACGTACCAGAATAAAATGT
36588280 GCAGACTTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.27
Consensus pattern (22 bp):
TATACGTACCAGAATAAAATGT
Found at i:36596172 original size:24 final size:24
Alignment explanation
Indices: 36596145--36596196 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
36596135 AGCTAGTTGA
*
36596145 ATTGTACAGTGTTGAGGTTGTTAG
1 ATTGTACAGTGCTGAGGTTGTTAG
36596169 ATTGTACAGTGCTGAGGTTGTTAG
1 ATTGTACAGTGCTGAGGTTGTTAG
36596193 ATTG
1 ATTG
36596197 CACGGGGTGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.21, C:0.06, G:0.33, T:0.40
Consensus pattern (24 bp):
ATTGTACAGTGCTGAGGTTGTTAG
Found at i:36599262 original size:15 final size:17
Alignment explanation
Indices: 36599232--36599263 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
36599222 TTGATACTTG
36599232 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
36599249 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
36599264 AATAATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:36601026 original size:15 final size:15
Alignment explanation
Indices: 36601003--36601033 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
36600993 TAGGTCGTTG
36601003 AGCACGAATTGGATT
1 AGCACGAATTGGATT
*
36601018 AGCATGAATTGGATT
1 AGCACGAATTGGATT
36601033 A
1 A
36601034 ATACTCGGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.10, G:0.26, T:0.29
Consensus pattern (15 bp):
AGCACGAATTGGATT
Found at i:36612984 original size:20 final size:20
Alignment explanation
Indices: 36612959--36612998 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
36612949 TAAAAAGATA
36612959 GTTATTACTAGTACTTTTGG
1 GTTATTACTAGTACTTTTGG
36612979 GTTATTACTAGTACTTTTGG
1 GTTATTACTAGTACTTTTGG
36612999 TTCCCTTGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.10, G:0.20, T:0.50
Consensus pattern (20 bp):
GTTATTACTAGTACTTTTGG
Found at i:36614934 original size:46 final size:46
Alignment explanation
Indices: 36614884--36615059 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
36614874 TGGTTGAGCA
* *
36614884 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
36614930 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
36614977 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
36615023 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36615060 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 62 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:36615040 original size:93 final size:93
Alignment explanation
Indices: 36614881--36615052 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
36614871 GGATGGTTGA
* * * *
36614881 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
36614946 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
36614974 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
36615039 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
36615053 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:36629460 original size:19 final size:19
Alignment explanation
Indices: 36629436--36629480 Score: 90
Period size: 19 Copynumber: 2.4 Consensus size: 19
36629426 AAATGAATCG
36629436 GTAACTCAGGTAATGCTCC
1 GTAACTCAGGTAATGCTCC
36629455 GTAACTCAGGTAATGCTCC
1 GTAACTCAGGTAATGCTCC
36629474 GTAACTC
1 GTAACTC
36629481 TATTCCGGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (19 bp):
GTAACTCAGGTAATGCTCC
Found at i:36630321 original size:2 final size:2
Alignment explanation
Indices: 36630296--36630340 Score: 63
Period size: 2 Copynumber: 22.5 Consensus size: 2
36630286 TCTAACTAAA
* * *
36630296 AC AC AA AC AC AA AC AC AA AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
36630338 AC A
1 AC A
36630341 AAAAAAGAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.58, C:0.42, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:36632086 original size:114 final size:114
Alignment explanation
Indices: 36631898--36632155 Score: 317
Period size: 114 Copynumber: 2.3 Consensus size: 114
36631888 GAGGAGCGAA
* *
36631898 GAAAGTGAAAGAATTCATG-C--TGATAATGATAGTAAGGATAGGCAGAGAGAAAAACGTCCTAG
1 GAAAGAGAAAGAATTCATGACGGTGATAATGATAGTAAGGATAGGCAGAGAGAAAAACGTCCAAG
* **
36631960 ATCCTCTGATGAAGAAGATGGCAAGCATTCCTATAGAGATAGAAGGGGT
66 ATCCTCTGATGAAGAAGATGACAAGCATTCCTATAGAGATAGAAGGCAT
* * * * **
36632009 GAAAGAGAGAGAATTCATGACGGTGATGATGATGGTAAGGATAGGCGGAGAGAAGAAGGGT-CAA
1 GAAAGAGAAAGAATTCATGACGGTGATAATGATAGTAAGGATAGGCAGAGAGAA-AAACGTCCAA
* * * *
36632073 GATCTTCTGATGAAGAAGATGACAAGCCTTCCTTTAGGGATAGAAGGCAT
65 GATCCTCTGATGAAGAAGATGACAAGCATTCCTATAGAGATAGAAGGCAT
* * *
36632123 GAAAGAGATAGAATTCGTGACGGTGAAAATGAT
1 GAAAGAGAAAGAATTCATGACGGTGATAATGAT
36632156 TCCAAGGCTA
Statistics
Matches: 124, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
111 17 0.14
112 1 0.01
114 102 0.82
115 4 0.03
ACGTcount: A:0.38, C:0.10, G:0.31, T:0.21
Consensus pattern (114 bp):
GAAAGAGAAAGAATTCATGACGGTGATAATGATAGTAAGGATAGGCAGAGAGAAAAACGTCCAAG
ATCCTCTGATGAAGAAGATGACAAGCATTCCTATAGAGATAGAAGGCAT
Found at i:36642425 original size:43 final size:40
Alignment explanation
Indices: 36642378--36642475 Score: 115
Period size: 40 Copynumber: 2.4 Consensus size: 40
36642368 GCCATATCCT
* *
36642378 AGATATGGTCTTACATGCGATCACATACCGATGCCACTGTCCC
1 AGATATGGTCTTACATG-AATCACATA-CGATGCCA-AGTCCC
* *
36642421 AGATAGGGTCTTACATGAATCATATACGATGCCAAGTCCC
1 AGATATGGTCTTACATGAATCACATACGATGCCAAGTCCC
* *
36642461 AGACATAGTCTTACA
1 AGATATGGTCTTACA
36642476 CATTTTCTCA
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
40 17 0.35
41 8 0.17
42 7 0.15
43 16 0.33
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (40 bp):
AGATATGGTCTTACATGAATCACATACGATGCCAAGTCCC
Found at i:36646132 original size:41 final size:40
Alignment explanation
Indices: 36645962--36646138 Score: 220
Period size: 40 Copynumber: 4.5 Consensus size: 40
36645952 AAGCCAAGTA
* * *
36645962 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
36646000 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
36646040 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
36646080 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
36646121 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
36646139 ATTATCATCC
Statistics
Matches: 124, Mismatches: 9, Indels: 9
0.87 0.06 0.06
Matches are distributed among these distances:
38 12 0.10
39 18 0.15
40 67 0.54
41 23 0.19
42 4 0.03
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:36648992 original size:24 final size:23
Alignment explanation
Indices: 36648964--36649008 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
36648954 ACAGCTCTAC
*
36648964 ATGAGCGTCCTGATATAGGCTCTT
1 ATGAGCGTCCTGACAT-GGCTCTT
*
36648988 ATGAGCTTCCTGACATGGCTC
1 ATGAGCGTCCTGACATGGCTC
36649009 GCTTGCACTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.31
Consensus pattern (23 bp):
ATGAGCGTCCTGACATGGCTCTT
Found at i:36654753 original size:5 final size:5
Alignment explanation
Indices: 36654743--36654812 Score: 52
Period size: 5 Copynumber: 12.8 Consensus size: 5
36654733 TTTTTCTCGT
**
36654743 TTTTC TTTTC TTTTTC ATTTTC TTTTC TTTT- TTCAC ATTCATTC TTTTC
1 TTTTC TTTTC -TTTTC -TTTTC TTTTC TTTTC TTTTC -TT--TTC TTTTC
36654792 TTTTTC ATTTTC TTTTC TTTT
1 -TTTTC -TTTTC TTTTC TTTT
36654813 TTTCACATTC
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
4 2 0.04
5 26 0.49
6 22 0.42
7 2 0.04
8 1 0.02
ACGTcount: A:0.07, C:0.19, G:0.00, T:0.74
Consensus pattern (5 bp):
TTTTC
Found at i:36654765 original size:17 final size:17
Alignment explanation
Indices: 36654743--36654813 Score: 97
Period size: 17 Copynumber: 3.9 Consensus size: 17
36654733 TTTTTCTCGT
36654743 TTTTCTTTTCTTTTTCA
1 TTTTCTTTTCTTTTTCA
36654760 TTTTCTTTTCTTTTTTCACA
1 TTTTCTTTTC-TTTTT--CA
36654780 TTCATTCTTTTCTTTTTCA
1 TT--TTCTTTTCTTTTTCA
36654799 TTTTCTTTTCTTTTT
1 TTTTCTTTTCTTTTT
36654814 TTCACATTCA
Statistics
Matches: 49, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
17 23 0.47
18 5 0.10
19 4 0.08
20 4 0.08
21 5 0.10
22 8 0.16
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTCTTTTCTTTTTCA
Found at i:36654788 original size:39 final size:40
Alignment explanation
Indices: 36654745--36654837 Score: 170
Period size: 40 Copynumber: 2.4 Consensus size: 40
36654735 TTTCTCGTTT
36654745 TTCTTTTCTTTTTCATTTTCTTTTC-TTTTTTCACATTCA
1 TTCTTTTCTTTTTCATTTTCTTTTCTTTTTTTCACATTCA
36654784 TTCTTTTCTTTTTCATTTTCTTTTCTTTTTTTCACATTCA
1 TTCTTTTCTTTTTCATTTTCTTTTCTTTTTTTCACATTCA
*
36654824 TTCTTTTTTTTTTC
1 TTCTTTTCTTTTTC
36654838 TCTCAATTGA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
39 25 0.48
40 27 0.52
ACGTcount: A:0.09, C:0.19, G:0.00, T:0.72
Consensus pattern (40 bp):
TTCTTTTCTTTTTCATTTTCTTTTCTTTTTTTCACATTCA
Found at i:36654830 original size:17 final size:18
Alignment explanation
Indices: 36654770--36654833 Score: 65
Period size: 18 Copynumber: 3.3 Consensus size: 18
36654760 TTTTCTTTTC
36654770 TTTTTTCACATTCATTCTTT
1 TTTTTTCACATTCATTC--T
** *
36654790 TCTTTTTCATTTTCTTTTCT
1 T-TTTTTCACATTC-ATTCT
36654810 TTTTTTCACATTCATTCT
1 TTTTTTCACATTCATTCT
36654828 TTTTTT
1 TTTTTT
36654834 TTTCTCTCAA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
18 10 0.28
19 10 0.28
20 3 0.08
21 10 0.28
22 3 0.08
ACGTcount: A:0.11, C:0.19, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTTTTCACATTCATTCT
Found at i:36654831 original size:19 final size:19
Alignment explanation
Indices: 36654770--36654834 Score: 69
Period size: 19 Copynumber: 3.3 Consensus size: 19
36654760 TTTTCTTTTC
36654770 TTTTTTCACATTCATTCTTT
1 TTTTTTCACATTCATTC-TT
** *
36654790 TCTTTTTCATTTTC-TTTTCT
1 T-TTTTTCACATTCATTCT-T
36654810 TTTTTTCACATTCATTCTT
1 TTTTTTCACATTCATTCTT
36654829 TTTTTT
1 TTTTTT
36654835 TTCTCTCAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
19 18 0.50
20 8 0.22
21 10 0.28
ACGTcount: A:0.11, C:0.18, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTTTTCACATTCATTCTT
Found at i:36656377 original size:13 final size:13
Alignment explanation
Indices: 36656359--36656384 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36656349 AAATTACAAC
36656359 AGACACACGCTCG
1 AGACACACGCTCG
36656372 AGACACACGCTCG
1 AGACACACGCTCG
36656385 TGTGCTCAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.38, G:0.23, T:0.08
Consensus pattern (13 bp):
AGACACACGCTCG
Found at i:36657764 original size:29 final size:29
Alignment explanation
Indices: 36657703--36657792 Score: 119
Period size: 29 Copynumber: 3.1 Consensus size: 29
36657693 CACATACCTG
*
36657703 TATATGGCCCACTAGGCCC-AATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
36657731 TATATGACCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* * * *
36657760 TATATGGCTCATCAGACCCAATTCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
36657789 TATA
1 TATA
36657793 GTCATGCTCA
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 17 0.31
29 37 0.69
ACGTcount: A:0.32, C:0.28, G:0.11, T:0.29
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:36666167 original size:43 final size:43
Alignment explanation
Indices: 36666085--36666167 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
36666075 TGAGGTATGT
* * *
36666085 AGCATCCAAGCTCGTTGAGAGGTCCGAGTTTATTATGGATGCG
1 AGCATCCAAGCTCGCTGAGAGGTCCGAGTTCATGATGGATGCG
* * * *
36666128 AGCATCCGAGCTCGCTGAGTGGTCTGAGTTCATGGTGGAT
1 AGCATCCAAGCTCGCTGAGAGGTCCGAGTTCATGATGGAT
36666168 ACGATTTATG
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.20, C:0.19, G:0.33, T:0.28
Consensus pattern (43 bp):
AGCATCCAAGCTCGCTGAGAGGTCCGAGTTCATGATGGATGCG
Found at i:36667945 original size:21 final size:21
Alignment explanation
Indices: 36667921--36667961 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
36667911 AAAATATAAA
36667921 TTACAACTCATAAATATTTTT
1 TTACAACTCATAAATATTTTT
* * *
36667942 TTACAATTTATAATTATTTT
1 TTACAACTCATAAATATTTT
36667962 ATCAAATCAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.54
Consensus pattern (21 bp):
TTACAACTCATAAATATTTTT
Found at i:36668676 original size:48 final size:47
Alignment explanation
Indices: 36668587--36668763 Score: 277
Period size: 48 Copynumber: 3.7 Consensus size: 47
36668577 CATAGGGTAT
36668587 AATGCCGATGCCATGTCCCAGACATGTTTTACACTAGCTCTCGTCTC
1 AATGCCGATGCCATGTCCCAGACATGTTTTACACTAGCTCTCGTCTC
36668634 AATGCCGA-GCCATGTCCCAGACATGTGTTTTACACTAGCTCTCGTCTC
1 AATGCCGATGCCATGTCCCAGACA--TGTTTTACACTAGCTCTCGTCTC
*
36668682 AATGCCGA-GCCATGTCCCAGACATGTTTTACACTAGCTGTCGTCTC
1 AATGCCGATGCCATGTCCCAGACATGTTTTACACTAGCTCTCGTCTC
* * *
36668728 AATGCCGATGACATGCCCCAGACATGGTCTTACACT
1 AATGCCGATGCCATGTCCCAGACAT-GTTTTACACT
36668764 GACTATCGAA
Statistics
Matches: 122, Mismatches: 4, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
46 45 0.37
47 22 0.18
48 55 0.45
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.28
Consensus pattern (47 bp):
AATGCCGATGCCATGTCCCAGACATGTTTTACACTAGCTCTCGTCTC
Found at i:36668706 original size:94 final size:95
Alignment explanation
Indices: 36668587--36668763 Score: 295
Period size: 94 Copynumber: 1.9 Consensus size: 95
36668577 CATAGGGTAT
* *
36668587 AATGCCGATGCCATGTCCCAGACATGTTTTACACTAGCTCTCGTCTCAATGCCGA-GCCATGTCC
1 AATGCCGATGCCATGTCCCAGACATGTTTTACACTAGCTCTCGTCTCAATGCCGATGACATGCCC
*
36668651 CAGACATGTGTTTTACACTAGCTCTCGTCTC
66 CAGACATG-GTCTTACACTAGCTCTCGTCTC
*
36668682 AATGCCGA-GCCATGTCCCAGACATGTTTTACACTAGCTGTCGTCTCAATGCCGATGACATGCCC
1 AATGCCGATGCCATGTCCCAGACATGTTTTACACTAGCTCTCGTCTCAATGCCGATGACATGCCC
36668746 CAGACATGGTCTTACACT
66 CAGACATGGTCTTACACT
36668764 GACTATCGAA
Statistics
Matches: 77, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
94 54 0.70
95 23 0.30
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.28
Consensus pattern (95 bp):
AATGCCGATGCCATGTCCCAGACATGTTTTACACTAGCTCTCGTCTCAATGCCGATGACATGCCC
CAGACATGGTCTTACACTAGCTCTCGTCTC
Found at i:36668850 original size:46 final size:46
Alignment explanation
Indices: 36668787--36668900 Score: 137
Period size: 46 Copynumber: 2.5 Consensus size: 46
36668777 GAGGTTGACA
* * **
36668787 CCATGTCCCAGACATGGTCTTACGCTCTCACATATCCGT-GCCGATG
1 CCATGTCTCAGACATGGTCTTACACTAACACATAT-CGTAGCCGATG
*
36668833 CCATGTCTCAGACATGGTCTTACACTAACACATCTCGTAGCCGATG
1 CCATGTCTCAGACATGGTCTTACACTAACACATATCGTAGCCGATG
36668879 -CATGT-TCTAGACAT-GTCTTACA
1 CCATGTCTC-AGACATGGTCTTACA
36668901 TTAGCTATTG
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
44 10 0.16
45 14 0.23
46 37 0.61
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.28
Consensus pattern (46 bp):
CCATGTCTCAGACATGGTCTTACACTAACACATATCGTAGCCGATG
Found at i:36671803 original size:42 final size:37
Alignment explanation
Indices: 36671723--36671799 Score: 147
Period size: 36 Copynumber: 2.1 Consensus size: 37
36671713 AGGCCTTGTA
36671723 ACTTGTCCCGATCTCGGGTACGGGTAAGGGGTGTTAC
1 ACTTGTCCCGATCTCGGGTACGGGTAAGGGGTGTTAC
36671760 ACTT-TCCCGATCTCGGGTACGGGTAAGGGGTGTTAC
1 ACTTGTCCCGATCTCGGGTACGGGTAAGGGGTGTTAC
36671796 ACTT
1 ACTT
36671800 ACACATGCTA
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 36 0.90
37 4 0.10
ACGTcount: A:0.17, C:0.22, G:0.32, T:0.29
Consensus pattern (37 bp):
ACTTGTCCCGATCTCGGGTACGGGTAAGGGGTGTTAC
Found at i:36686757 original size:3 final size:3
Alignment explanation
Indices: 36686749--36686797 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
36686739 CGGGAAGCTA
*
36686749 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TAG TGG
1 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG
36686797 T
1 T
36686798 AGGTCTTCTG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.02, C:0.00, G:0.63, T:0.35
Consensus pattern (3 bp):
TGG
Found at i:36687727 original size:258 final size:258
Alignment explanation
Indices: 36687270--36687789 Score: 986
Period size: 258 Copynumber: 2.0 Consensus size: 258
36687260 CCGAGGATCG
*
36687270 TACCTAAGGGAGGCGAGAACTACATTAATCCTAACCTAAGCACAAATAAAGCTAAGTAGTGCTTT
1 TACCTAAGGGAGGCGAGAACTAAATTAATCCTAACCTAAGCACAAATAAAGCTAAGTAGTGCTTT
36687335 AAATAAATTATACTATGAATAGACATAAAGAAATATTTTTGGTATTTTTATAAATAAAGAAAAAA
66 AAATAAATTATACTATGAATAGACATAAAGAAATATTTTTGGTATTTTTATAAATAAAGAAAAAA
* *
36687400 TACTAGAAAGGGAAGACTATGAGAAATTTGATATGGAAACTAAATCAGATATGAGCATGGATGAT
131 TACTAGAAAGGGAAGACTATGAGAAATTTGATATGGAAACTAAATCAGATATAAGCATGAATGAT
* *
36687465 TAGCTCGCTTCGGCTGTCATAAATAATTGTTGCTTTGGGTTCCTTGTTAAATCAACTATTCGT
196 TAGCTCGCTTCGGCTGTCATAAATAATTGTTGCTTTGGGTTCCTTATTAAATAAACTATTCGT
36687528 TACCTAAGGGAGGCGAGAACTAAATTAATCCTAACCTAAGCACAAATAAAGCTAAGTAGTGCTTT
1 TACCTAAGGGAGGCGAGAACTAAATTAATCCTAACCTAAGCACAAATAAAGCTAAGTAGTGCTTT
36687593 AAATAAATTATACTATGAATAGACATAAAGAAATATTTTTGGTATTTTTATAAATAAAGAAAAAA
66 AAATAAATTATACTATGAATAGACATAAAGAAATATTTTTGGTATTTTTATAAATAAAGAAAAAA
36687658 TACTAGAAAGGGAAGACTATGAGAAATTTGATATGGAAACTAAATCAGATATAAGCATGAATGAT
131 TACTAGAAAGGGAAGACTATGAGAAATTTGATATGGAAACTAAATCAGATATAAGCATGAATGAT
*
36687723 TAGCTCGCTTCGGTTGTCATAAATAATTGTTGCTTTGGGTTCCTTATTAAATAAACTATTCGT
196 TAGCTCGCTTCGGCTGTCATAAATAATTGTTGCTTTGGGTTCCTTATTAAATAAACTATTCGT
36687786 TACC
1 TACC
36687790 CTAGTAGGAT
Statistics
Matches: 256, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
258 256 1.00
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (258 bp):
TACCTAAGGGAGGCGAGAACTAAATTAATCCTAACCTAAGCACAAATAAAGCTAAGTAGTGCTTT
AAATAAATTATACTATGAATAGACATAAAGAAATATTTTTGGTATTTTTATAAATAAAGAAAAAA
TACTAGAAAGGGAAGACTATGAGAAATTTGATATGGAAACTAAATCAGATATAAGCATGAATGAT
TAGCTCGCTTCGGCTGTCATAAATAATTGTTGCTTTGGGTTCCTTATTAAATAAACTATTCGT
Found at i:36701889 original size:28 final size:28
Alignment explanation
Indices: 36701616--36701889 Score: 214
Period size: 28 Copynumber: 9.8 Consensus size: 28
36701606 ATTTCGTAGA
* * *
36701616 TCGCCATAAAGGCTTCCCTATCTATAGAT
1 TCGCCACAAAGGCTTCCCTTTTTATAG-T
* * * *
36701645 T-GCAACAAAGTCTTTCCTTCTTATAGAT
1 TCGCCACAAAGGCTTCCCTTTTTATAG-T
* * * * *
36701673 T-TCCAGAAATGCTTCCTTTTTTATAAT
1 TCGCCACAAAGGCTTCCCTTTTTATAGT
** * *
36701700 TTTCCACAAAAGCTTCCCTTTTCATAG-
1 TCGCCACAAAGGCTTCCCTTTTTATAGT
* *
36701727 TCGCCAAAAAGGCTTTCCTTTTTATAGT
1 TCGCCACAAAGGCTTCCCTTTTTATAGT
* * * *
36701755 TCACCACTAAGGCTTCACTTTTCATAGAT
1 TCGCCACAAAGGCTTCCCTTTTTATAG-T
*
36701784 T-GCCACAAAGACTTCCCTTTTTATAGT
1 TCGCCACAAAGGCTTCCCTTTTTATAGT
* * *
36701811 TTGCCATAAAGGCTTCCCTTTTCATAGT
1 TCGCCACAAAGGCTTCCCTTTTTATAGT
* ***
36701839 TTGTTGCAAAGGCTTCCCTTTTTATAGT
1 TCGCCACAAAGGCTTCCCTTTTTATAGT
*
36701867 TCGCAACAAAGGCTTCCCTTTTT
1 TCGCCACAAAGGCTTCCCTTTTT
36701890 TTAACGTCTT
Statistics
Matches: 191, Mismatches: 50, Indels: 9
0.76 0.20 0.04
Matches are distributed among these distances:
27 25 0.13
28 163 0.85
29 3 0.02
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.39
Consensus pattern (28 bp):
TCGCCACAAAGGCTTCCCTTTTTATAGT
Found at i:36714410 original size:213 final size:213
Alignment explanation
Indices: 36714039--36714454 Score: 733
Period size: 213 Copynumber: 2.0 Consensus size: 213
36714029 TTATCAATCT
*
36714039 TGTATTCAATTTCACATCAATAGCATGTACACAATTCATACATACAATATTCAATTTAAGCATAT
1 TGTATTCAATTTCACATCAATAGCATGTAAACAATTCATACATACAATATTCAATTTAAGCATAT
* * *
36714104 AAATAAACACAATTTAGTTACACGAACTTACCTCAATACTTGTTCTTATACGAAAATCTACTAAT
66 AAATAAACACAATTTAATTACACGAACTTACATCAATACTTGTTCGTATACGAAAATCTACTAAT
36714169 CAGAAACTTTTTGTTTTCCTCAATCCAATTCCGTATTTGGTCTTTTCGAATCTATATAAATGAAT
131 CAGAAACTTTTTGTTTTCCTCAATCCAATTCCGTATTTGGTCTTTTCGAATCTATATAAATGAAT
36714234 TTAATCATGAATTTATCA
196 TTAATCATGAATTTATCA
*
36714252 TGTATTCAATTTCACATCAATAGCATTTAAACAATTCATACATACAATATTCAATTTAAGCATAT
1 TGTATTCAATTTCACATCAATAGCATGTAAACAATTCATACATACAATATTCAATTTAAGCATAT
* * *
36714317 AAATAAACACGATTTAATTACACGAACTTACATCAATATTTGTTCGTATACGAAAATCTACTACT
66 AAATAAACACAATTTAATTACACGAACTTACATCAATACTTGTTCGTATACGAAAATCTACTAAT
* * *
36714382 CAGAAACTTTTTGTTTTCCTCGATCCAATTTCGTATTTGGTCTTTTCGGATCTATATAAATGAAT
131 CAGAAACTTTTTGTTTTCCTCAATCCAATTCCGTATTTGGTCTTTTCGAATCTATATAAATGAAT
36714447 TTAATCAT
196 TTAATCAT
36714455 CAATATATTA
Statistics
Matches: 192, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
213 192 1.00
ACGTcount: A:0.36, C:0.18, G:0.08, T:0.38
Consensus pattern (213 bp):
TGTATTCAATTTCACATCAATAGCATGTAAACAATTCATACATACAATATTCAATTTAAGCATAT
AAATAAACACAATTTAATTACACGAACTTACATCAATACTTGTTCGTATACGAAAATCTACTAAT
CAGAAACTTTTTGTTTTCCTCAATCCAATTCCGTATTTGGTCTTTTCGAATCTATATAAATGAAT
TTAATCATGAATTTATCA
Found at i:36716715 original size:213 final size:213
Alignment explanation
Indices: 36716344--36716759 Score: 715
Period size: 213 Copynumber: 2.0 Consensus size: 213
36716334 TTATCGATCT
** *
36716344 TGTATTCAATTTCACATCAATAGCATGTACCCAATTCATACATACAATATTCAATTTAAGCATAT
1 TGTATTCAATTTCACATCAATAGCATGTAAACAACTCATACATACAATATTCAATTTAAGCATAT
* * * *
36716409 AAATAAACACAATTTAGTTACATAAAGTTACCTCAATACTTGTTCTTATACGAAAATCTACTAAT
66 AAATAAACACAATTTAGTTACACAAACTTACCTCAATACTTGTTCGTATACGAAAATCAACTAAT
*
36716474 CAGAAACTTTTTGTTTTCCTCAATCCAATTCCGTATTTGGTCTTTTCGGATTTATATAAATGAAT
131 CAGAAACTTTTTGTTTTCCTCAATCCAATTCCGTATTTGGTCTTTTCGGATCTATATAAATGAAT
36716539 TTAATCATGAATTTATCA
196 TTAATCATGAATTTATCA
*
36716557 TGTATTCAATTTCACATCAATAGCATTTAAACAACTCATACATACAATATTCAATTTAAGCATAT
1 TGTATTCAATTTCACATCAATAGCATGTAAACAACTCATACATACAATATTCAATTTAAGCATAT
* *
36716622 AAATAAACACGATTTAGTTACACGAACTTACCTCAATACTTGTTCGTATACGAAAATCAACTAAT
66 AAATAAACACAATTTAGTTACACAAACTTACCTCAATACTTGTTCGTATACGAAAATCAACTAAT
* *
36716687 CAGAAACTTTTTGTTTTCCTCGATCCAATTCCGTATTTGGTCTTTTCGGATCTATGTAAATGAAT
131 CAGAAACTTTTTGTTTTCCTCAATCCAATTCCGTATTTGGTCTTTTCGGATCTATATAAATGAAT
36716752 TTAATCAT
196 TTAATCAT
36716760 CAATATATTA
Statistics
Matches: 190, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
213 190 1.00
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.38
Consensus pattern (213 bp):
TGTATTCAATTTCACATCAATAGCATGTAAACAACTCATACATACAATATTCAATTTAAGCATAT
AAATAAACACAATTTAGTTACACAAACTTACCTCAATACTTGTTCGTATACGAAAATCAACTAAT
CAGAAACTTTTTGTTTTCCTCAATCCAATTCCGTATTTGGTCTTTTCGGATCTATATAAATGAAT
TTAATCATGAATTTATCA
Found at i:36725654 original size:13 final size:13
Alignment explanation
Indices: 36725636--36725661 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36725626 TTTTTCGACC
36725636 CGGGTGTGGGGTA
1 CGGGTGTGGGGTA
36725649 CGGGTGTGGGGTA
1 CGGGTGTGGGGTA
36725662 TGCTAGACCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.08, G:0.62, T:0.23
Consensus pattern (13 bp):
CGGGTGTGGGGTA
Found at i:36726790 original size:25 final size:25
Alignment explanation
Indices: 36726707--36726824 Score: 119
Period size: 25 Copynumber: 4.6 Consensus size: 25
36726697 TGAACTCTAG
* *
36726707 CTCAAGGCCTGATAATTAAACACCGA
1 CTCAAAGCCTGCTAA-TAAACACCGA
* * *
36726733 CTCACAGCCTGCTAGATAAATCACTGG
1 CTCAAAGCCTGCTA-ATAAA-CACCGA
* * *
36726760 CTCAAAGTCTACTAATAAATACCGA
1 CTCAAAGCCTGCTAATAAACACCGA
*
36726785 CTCAAAGCCTGCTAATATACACCGA
1 CTCAAAGCCTGCTAATAAACACCGA
*
36726810 CTTAAAGCCTGCTAA
1 CTCAAAGCCTGCTAA
36726825 GCAATCACAT
Statistics
Matches: 74, Mismatches: 16, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
25 38 0.51
26 20 0.27
27 16 0.22
ACGTcount: A:0.36, C:0.28, G:0.14, T:0.22
Consensus pattern (25 bp):
CTCAAAGCCTGCTAATAAACACCGA
Found at i:36732703 original size:28 final size:28
Alignment explanation
Indices: 36732661--36732891 Score: 148
Period size: 28 Copynumber: 8.3 Consensus size: 28
36732651 TTCTCCGTAA
* *
36732661 CATAGACCTCCATAAAGGCTTCTATTTT
1 CATAGATCACCATAAAGGCTTCTATTTT
* *
36732689 -AGTAGATCACTATAAAGGCTTCTCTTTT
1 CA-TAGATCACCATAAAGGCTTCTATTTT
** **
36732717 CATAGATTGCCATAAAGGCTTCCCTTTT
1 CATAGATCACCATAAAGGCTTCTATTTT
* * * * **
36732745 TATAGTTCACCACAAAGGTTTCCCTTTT
1 CATAGATCACCATAAAGGCTTCTATTTT
* **
36732773 CATAGAT-AGTC-TCAAAGGCTTCCCTTTT
1 CATAGATCA-CCAT-AAAGGCTTCTATTTT
* ** *
36732801 CATAGATCGA-CACAAAGGCTTCCCTCTT
1 CATAGATC-ACCATAAAGGCTTCTATTTT
* *
36732829 -ATAGTTCACCATAAAGGCTTCTCTTTT
1 CATAGATCACCATAAAGGCTTCTATTTT
* * **
36732856 CATATATCACCACAAAGGCTTCCCTTTT
1 CATAGATCACCATAAAGGCTTCTATTTT
36732884 CATAGATC
1 CATAGATC
36732892 GCTACAAACA
Statistics
Matches: 164, Mismatches: 30, Indels: 18
0.77 0.14 0.08
Matches are distributed among these distances:
26 1 0.01
27 23 0.14
28 138 0.84
29 1 0.01
30 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.12, T:0.35
Consensus pattern (28 bp):
CATAGATCACCATAAAGGCTTCTATTTT
Found at i:36732898 original size:28 final size:28
Alignment explanation
Indices: 36732702--36733057 Score: 333
Period size: 28 Copynumber: 12.6 Consensus size: 28
36732692 AGATCACTAT
* * *
36732702 AAAGGCTTCTCTTTTCATAGATTGCCAT
1 AAAGGCTTCCCTTTTCATAGATCGCCAC
* * *
36732730 AAAGGCTTCCCTTTTTATAGTTCACCAC
1 AAAGGCTTCCCTTTTCATAGATCGCCAC
* * * *
36732758 AAAGGTTTCCCTTTTCATAGATAGTCTC
1 AAAGGCTTCCCTTTTCATAGATCGCCAC
*
36732786 AAAGGCTTCCCTTTTCATAGATCGACAC
1 AAAGGCTTCCCTTTTCATAGATCGCCAC
* * * *
36732814 AAAGGCTTCCCTCTT-ATAGTTCACCAT
1 AAAGGCTTCCCTTTTCATAGATCGCCAC
* * *
36732841 AAAGGCTTCTCTTTTCATATATCACCAC
1 AAAGGCTTCCCTTTTCATAGATCGCCAC
36732869 AAAGGCTTCCCTTTTCATAGATCGCTACAAAC
1 AAAGGCTTCCCTTTTCATAGATCGC--C--AC
* * * *
36732901 AAAGGATTTCTTTTTCACA-ATTCGCCAC
1 AAAGGCTTCCCTTTTCATAGA-TCGCCAC
* *
36732929 AAAGGCTT-CCTTTGTCAGAAATCGCCAC
1 AAAGGCTTCCCTTT-TCATAGATCGCCAC
** *
36732957 AAAGGCTTCCCTTTTTTTAGTTCGCCAC
1 AAAGGCTTCCCTTTTCATAGATCGCCAC
*
36732985 AAAGGCTTCTCTTTTCATAGATCGCCAC
1 AAAGGCTTCCCTTTTCATAGATCGCCAC
* * * *
36733013 AAAGGCTT-CATTTTTATAGTTTGCCAC
1 AAAGGCTTCCCTTTTCATAGATCGCCAC
*
36733040 AAAAGCTTCCCTTTTCAT
1 AAAGGCTTCCCTTTTCAT
36733058 GCTTCTCTTT
Statistics
Matches: 264, Mismatches: 54, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
27 46 0.17
28 188 0.71
29 6 0.02
30 2 0.01
31 1 0.00
32 21 0.08
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.35
Consensus pattern (28 bp):
AAAGGCTTCCCTTTTCATAGATCGCCAC
Found at i:36733098 original size:28 final size:28
Alignment explanation
Indices: 36733058--36733121 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
36733048 CCCTTTTCAT
* * *
36733058 GCTTCTCTTTTTATAGTTTGCCACAAAG
1 GCTTCCCTCTTTATAGTTCGCCACAAAG
36733086 GCTTCCCTCTTTATAGTTCGCCACAAAG
1 GCTTCCCTCTTTATAGTTCGCCACAAAG
36733114 GCTTCCCT
1 GCTTCCCT
36733122 TTTTCTAACG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.19, C:0.30, G:0.14, T:0.38
Consensus pattern (28 bp):
GCTTCCCTCTTTATAGTTCGCCACAAAG
Found at i:36738362 original size:10 final size:10
Alignment explanation
Indices: 36738349--36738377 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
36738339 AAAAAACTTA
36738349 AAAATATTTC
1 AAAATATTTC
36738359 AAAATATTTC
1 AAAATATTTC
36738369 AAAATATTT
1 AAAATATTT
36738378 TTCGTTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (10 bp):
AAAATATTTC
Found at i:36750625 original size:20 final size:21
Alignment explanation
Indices: 36750600--36750641 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
36750590 AATATGCTGT
*
36750600 AAAATGAAAG-TTTTTGATAG
1 AAAATGAAAGATTATTGATAG
36750620 AAAATGAAAGATTATTGATAG
1 AAAATGAAAGATTATTGATAG
36750641 A
1 A
36750642 TAAACCACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31
Consensus pattern (21 bp):
AAAATGAAAGATTATTGATAG
Found at i:36751171 original size:32 final size:32
Alignment explanation
Indices: 36751129--36751237 Score: 121
Period size: 32 Copynumber: 3.3 Consensus size: 32
36751119 AAATGATACA
*
36751129 ACTTGAAAAGGTTAGGTACACTTTGTGTGTAC
1 ACTTGAAAAGGTTAGGTATACTTTGTGTGTAC
* *
36751161 ACTTGGAAAGGTTAGGTATACTTTGTGTATAC
1 ACTTGAAAAGGTTAGGTATACTTTGTGTGTAC
** *
36751193 -CATATGAAAAGGAAAGGTATACTTTGTGAGTACC
1 AC-T-TGAAAAGGTTAGGTATACTTTGTGTGTA-C
*
36751227 ACTTGGAAAGG
1 ACTTGAAAAGG
36751238 AATGTACGCC
Statistics
Matches: 64, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
31 1 0.02
32 30 0.47
33 30 0.47
34 2 0.03
35 1 0.02
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.31
Consensus pattern (32 bp):
ACTTGAAAAGGTTAGGTATACTTTGTGTGTAC
Found at i:36751237 original size:33 final size:33
Alignment explanation
Indices: 36751142--36751239 Score: 112
Period size: 33 Copynumber: 3.0 Consensus size: 33
36751132 TGAAAAGGTT
* * **
36751142 AGGTACACTTTGTGTGTA-CACTTGGAAAGGTT
1 AGGTATACTTTGTGAGTACCACTTGGAAAGGAA
*
36751174 AGGTATACTTTGTGTA-TACCA-TATGAAAAGGAA
1 AGGTATACTTTGTG-AGTACCACT-TGGAAAGGAA
36751207 AGGTATACTTTGTGAGTACCACTTGGAAAGGAA
1 AGGTATACTTTGTGAGTACCACTTGGAAAGGAA
36751240 TGTACGCCTC
Statistics
Matches: 55, Mismatches: 6, Indels: 9
0.79 0.09 0.13
Matches are distributed among these distances:
32 17 0.31
33 37 0.67
34 1 0.02
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.31
Consensus pattern (33 bp):
AGGTATACTTTGTGAGTACCACTTGGAAAGGAA
Found at i:36754783 original size:40 final size:40
Alignment explanation
Indices: 36754560--36754816 Score: 315
Period size: 40 Copynumber: 6.5 Consensus size: 40
36754550 CGGATGATAA
* * *
36754560 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* * *
36754600 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
36754640 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
36754680 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
36754720 CCGGGCTAAGTCTCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* **
36754760 CCGGGCTATGTCCCGAAGGCA-TTGAACGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
36754799 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
36754817 TACTTGGCTT
Statistics
Matches: 192, Mismatches: 23, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
38 15 0.08
39 14 0.07
40 163 0.85
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:36760019 original size:32 final size:32
Alignment explanation
Indices: 36759977--36760101 Score: 162
Period size: 32 Copynumber: 3.9 Consensus size: 32
36759967 AAGTGATACA
36759977 ACTTGAAAAGGTTAGGTACACTTTGTGTGTAC
1 ACTTGAAAAGGTTAGGTACACTTTGTGTGTAC
* * *
36760009 ACTTGGAAAGGTTAGGTATACTTTGTGTATAC
1 ACTTGAAAAGGTTAGGTACACTTTGTGTGTAC
**
36760041 -CATATGAAAAGGAAAGGTACACTTTGTGTGTAC
1 AC-T-TGAAAAGGTTAGGTACACTTTGTGTGTAC
* *
36760074 ACTTGGAAAGGTTAGGTATACTTTGTGT
1 ACTTGAAAAGGTTAGGTACACTTTGTGT
36760102 ATACCATATG
Statistics
Matches: 78, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
31 1 0.01
32 51 0.65
33 25 0.32
34 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.26, T:0.34
Consensus pattern (32 bp):
ACTTGAAAAGGTTAGGTACACTTTGTGTGTAC
Found at i:36760019 original size:65 final size:64
Alignment explanation
Indices: 36759944--36760147 Score: 207
Period size: 65 Copynumber: 3.1 Consensus size: 64
36759934 AAAGGGTAAA
**
36759944 ACTTGGAAAGGACTTA-TATACCCAAGTG-ATACAACT-TGAAAAGGTTAGGTACACTTTGTGTG
1 ACTTGGAAAGG--TTAGTATA-CCAAGTGTATACAA-TATGAAAAGGAAAGGTACACTTTGTGTG
36760006 TAC
62 TAC
*** *
36760009 ACTTGGAAAGGTTAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTACACTTTGTGTGTAC
1 ACTTGGAAAGGTTA-GTATACCAAGTGTATACAATATGAAAAGGAAAGGTACACTTTGTGTGTAC
*** * * * *
36760074 ACTTGGAAAGGTTAGGTATACTTTGTGTATACCATATGAAAATGAAAGGTATACTTTGTGAGTAC
1 ACTTGGAAAGGTTA-GTATACCAAGTGTATACAATATGAAAAGGAAAGGTACACTTTGTGTGTA-
36760139 C
64 C
36760140 ACTTGGAA
1 ACTTGGAA
36760148 TGGAATGTAC
Statistics
Matches: 125, Mismatches: 9, Indels: 9
0.87 0.06 0.06
Matches are distributed among these distances:
63 3 0.02
64 5 0.04
65 108 0.86
66 9 0.07
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.31
Consensus pattern (64 bp):
ACTTGGAAAGGTTAGTATACCAAGTGTATACAATATGAAAAGGAAAGGTACACTTTGTGTGTAC
Found at i:36760140 original size:33 final size:33
Alignment explanation
Indices: 36760022--36760133 Score: 147
Period size: 33 Copynumber: 3.4 Consensus size: 33
36760012 TGGAAAGGTT
36760022 AGGTATACTTTGTGTATACCATATGAAAAGGAA
1 AGGTATACTTTGTGTATACCATATGAAAAGGAA
* * * **
36760055 AGGTACACTTTGTGTGTA-CACT-TGGAAAGGTT
1 AGGTATACTTTGTGTATACCA-TATGAAAAGGAA
*
36760087 AGGTATACTTTGTGTATACCATATGAAAATGAA
1 AGGTATACTTTGTGTATACCATATGAAAAGGAA
36760120 AGGTATACTTTGTG
1 AGGTATACTTTGTG
36760134 AGTACCACTT
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
32 26 0.40
33 39 0.60
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.34
Consensus pattern (33 bp):
AGGTATACTTTGTGTATACCATATGAAAAGGAA
Found at i:36762940 original size:21 final size:21
Alignment explanation
Indices: 36762916--36762956 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
36762906 CATTATAATA
*
36762916 AGCCTACGAGGTATTAAAACG
1 AGCCTACGAGGCATTAAAACG
* *
36762937 AGCCTATGAGGCCTTAAAAC
1 AGCCTACGAGGCATTAAAAC
36762957 TAGTTTAGGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (21 bp):
AGCCTACGAGGCATTAAAACG
Found at i:36763835 original size:38 final size:37
Alignment explanation
Indices: 36763793--36763896 Score: 97
Period size: 38 Copynumber: 2.8 Consensus size: 37
36763783 ATGAATCGTT
*
36763793 ACACCAATACGAAGCCTGCTAGGCATCAAGCCCGATAA
1 ACACCAATA-GAAGCCTGCTAGGCATCAAGACCGATAA
* * *
36763831 ACACCTACA-ATAAGCCTACTAGGCATCAAGATCGATAA
1 ACACC-A-ATAGAAGCCTGCTAGGCATCAAGACCGATAA
*
36763869 ACATCGGAAT-GAAGCCTGCTAGGC-TCAA
1 ACA-C-CAATAGAAGCCTGCTAGGCATCAA
36763897 AGTCTAATAA
Statistics
Matches: 54, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
37 4 0.07
38 45 0.83
39 4 0.07
40 1 0.02
ACGTcount: A:0.38, C:0.28, G:0.18, T:0.16
Consensus pattern (37 bp):
ACACCAATAGAAGCCTGCTAGGCATCAAGACCGATAA
Found at i:36763943 original size:39 final size:39
Alignment explanation
Indices: 36763880--36763989 Score: 166
Period size: 39 Copynumber: 2.8 Consensus size: 39
36763870 CATCGGAATG
* * *
36763880 AAGCCTGCTAGGCTCAAAGTCTAATAAGTCTCCGGCACA
1 AAGCCTGTTAGGCTCAAAGCCTAATAAGTCACCGGCACA
* *
36763919 AAGCTTGTTAGGCTCAAAGCCTAATAAGTCACCGGCACG
1 AAGCCTGTTAGGCTCAAAGCCTAATAAGTCACCGGCACA
*
36763958 AAGCCTGTTAGGCTCAAAGCCTGATAAGTCAC
1 AAGCCTGTTAGGCTCAAAGCCTAATAAGTCAC
36763990 TGAACAAGGC
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 64 1.00
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21
Consensus pattern (39 bp):
AAGCCTGTTAGGCTCAAAGCCTAATAAGTCACCGGCACA
Found at i:36764011 original size:38 final size:39
Alignment explanation
Indices: 36763873--36764012 Score: 131
Period size: 39 Copynumber: 3.6 Consensus size: 39
36763863 CGATAAACAT
* * * *
36763873 CGGAATGAAGCCTGCTAGGCTCAAAGTCTAATAAGTCTC
1 CGGAACGAAGCCTGCCAGGCTCAAAGCCTAATAAGTCAC
* * * **
36763912 CGGCACAAAGCTTGTTAGGCTCAAAGCCTAATAAGTCAC
1 CGGAACGAAGCCTGCCAGGCTCAAAGCCTAATAAGTCAC
* ** *
36763951 CGGCACGAAGCCTGTTAGGCTCAAAGCCTGATAAGTCA-
1 CGGAACGAAGCCTGCCAGGCTCAAAGCCTAATAAGTCAC
*
36763989 CTGAAC-AAGGCCTGCCAGGCTCAA
1 CGGAACGAA-GCCTGCCAGGCTCAA
36764013 GCTCCGATAT
Statistics
Matches: 86, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
37 2 0.02
38 17 0.20
39 67 0.78
ACGTcount: A:0.31, C:0.26, G:0.24, T:0.19
Consensus pattern (39 bp):
CGGAACGAAGCCTGCCAGGCTCAAAGCCTAATAAGTCAC
Found at i:36766354 original size:20 final size:21
Alignment explanation
Indices: 36766315--36766354 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
36766305 AAGGGCTATT
*
36766315 TTGTAAAGTTTGTAAAATAAG
1 TTGTAAAGTGTGTAAAATAAG
*
36766336 TTGTAAA-TGTGTGAAATAA
1 TTGTAAAGTGTGTAAAATAA
36766355 TTGAAATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.42, C:0.00, G:0.20, T:0.38
Consensus pattern (21 bp):
TTGTAAAGTGTGTAAAATAAG
Found at i:36769932 original size:58 final size:58
Alignment explanation
Indices: 36769780--36769934 Score: 156
Period size: 57 Copynumber: 2.7 Consensus size: 58
36769770 CCACATATCA
* * * *
36769780 TATAACAGGATTACTTGTCCAAGCTAAATCCTGTTTC--CAACATATGCTCATAAGAGCT
1 TATATCAGGATTACTAGTCCAGGCTAAAT-CT-TTTCTATAACATATGCTCATAAGAGCT
* ** * * * *
36769838 TA-ATCAGGACTACCCGTCCGGGCTAAATCCTGTCTATAACATATGCTCA-AGAGGGCT
1 TATATCAGGATTACTAGTCCAGGCTAAATCTTTTCTATAACATATGCTCATA-AGAGCT
36769895 TATATCAGGATTACTAGTCCAGGCTAAATCTTTTCTATAA
1 TATATCAGGATTACTAGTCCAGGCTAAATCTTTTCTATAA
36769935 TGAGGTCAAT
Statistics
Matches: 77, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
55 3 0.04
56 2 0.03
57 39 0.51
58 33 0.43
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (58 bp):
TATATCAGGATTACTAGTCCAGGCTAAATCTTTTCTATAACATATGCTCATAAGAGCT
Found at i:36779970 original size:18 final size:19
Alignment explanation
Indices: 36779947--36779983 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
36779937 AATTTAGCTT
36779947 TTAAACTC-TAAATGAAAA
1 TTAAACTCTTAAATGAAAA
*
36779965 TTAAACTCTTAAATTAAAA
1 TTAAACTCTTAAATGAAAA
36779984 ATTTTTGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.54, C:0.11, G:0.03, T:0.32
Consensus pattern (19 bp):
TTAAACTCTTAAATGAAAA
Found at i:36780877 original size:19 final size:18
Alignment explanation
Indices: 36780834--36780885 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 18
36780824 TTATTTTGAC
36780834 TTTTTAAAATTTAGTTAAAT
1 TTTTTAAAATTT--TTAAAT
*
36780854 ATTTTAAAATTTTCTAAAT
1 TTTTTAAAATTTT-TAAAT
*
36780873 TTTTTAATATTTT
1 TTTTTAAAATTTT
36780886 AATATATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 1 0.04
19 16 0.57
20 11 0.39
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (18 bp):
TTTTTAAAATTTTTAAAT
Found at i:36781836 original size:4 final size:4
Alignment explanation
Indices: 36781827--36781851 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
36781817 GAAGCATGGT
36781827 CCAC CCAC CCAC CCAC CCAC CCAC C
1 CCAC CCAC CCAC CCAC CCAC CCAC C
36781852 TTAAAAGGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.76, G:0.00, T:0.00
Consensus pattern (4 bp):
CCAC
Found at i:36786282 original size:27 final size:27
Alignment explanation
Indices: 36786252--36786429 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
36786242 ATATTGAGTC
* *
36786252 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
36786279 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
**
36786306 CGCACACTTAGTGCTACATGGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
36786334 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
36786361 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
36786388 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
36786415 CGCACACCTAGTGCT
1 CGCACACTTAGTGCT
36786430 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 103 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:36786391 original size:82 final size:81
Alignment explanation
Indices: 36786273--36786428 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
36786263 TGCTATATAA
* * *
36786273 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATGGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
*
36786338 CACTTAGTGCCGCATGG
65 CACCTAGTGCCGCATGG
* * **
36786355 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
36786419 CACCTAGTGC
65 CACCTAGTGC
36786429 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.77
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACCTAGTGCCGCATGG
Found at i:36786931 original size:12 final size:12
Alignment explanation
Indices: 36786914--36786939 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
36786904 ATGGCATACT
36786914 TATGTATATATA
1 TATGTATATATA
36786926 TATGTATATATA
1 TATGTATATATA
36786938 TA
1 TA
36786940 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:36798568 original size:39 final size:40
Alignment explanation
Indices: 36798512--36798679 Score: 198
Period size: 39 Copynumber: 4.3 Consensus size: 40
36798502 GGACTAAGAT
* * *
36798512 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* *
36798552 CCG-AGGCATTCGTGCGAGTTATTAAAGCCGGG-TAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
36798590 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
36798630 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
36798669 CCGAAGGCATT
1 CCGAAGGCATT
36798680 TGAACGAGGA
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
38 9 0.08
39 83 0.75
40 18 0.16
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:36798710 original size:78 final size:79
Alignment explanation
Indices: 36798534--36798714 Score: 206
Period size: 78 Copynumber: 2.3 Consensus size: 79
36798524 GTGCGAGATA
* *
36798534 CTAAATCCGGGTTAAGTCCCG-AGGCATTCGTGCGAGTTATTAAAGCCGGGTAAGTCCCGAAGGC
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGTAAGTCCCGAAGGC
** **
36798598 ATTCGTGCGAGTTG
66 ATTCGAACGAGGAG
* * * * *
36798612 TTAAATCCGGGTTACGTCCCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGG-TAAGTCCCGAAGG
*
36798676 CATTTGAACGAGGAG
65 CATTCGAACGAGGAG
* *
36798691 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
36798715 TACGTGATTG
Statistics
Matches: 85, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
78 52 0.61
79 33 0.39
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (79 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGTAAGTCCCGAAGGC
ATTCGAACGAGGAG
Found at i:36806565 original size:39 final size:40
Alignment explanation
Indices: 36806414--36806583 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 40
36806404 GGACTAAGAT
* * *
36806414 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
36806454 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
36806494 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * * *
36806534 CCGAAGGCA-TGGGGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
36806573 CCGAAGGCATT
1 CCGAAGGCATT
36806584 TGAACGAGGA
Statistics
Matches: 111, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
39 31 0.28
40 80 0.72
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.24
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:36806603 original size:79 final size:80
Alignment explanation
Indices: 36806436--36806618 Score: 199
Period size: 79 Copynumber: 2.3 Consensus size: 80
36806426 GTGCGAGATA
* * * * *
36806436 CTAAATCCGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGGGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
36806501 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
36806516 TTAAATCCGGGTTACGTCCCGAAGGCA-TGGGGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGGGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
36806580 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
36806595 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
36806619 TACGCGAATT
Statistics
Matches: 84, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
78 14 0.17
79 46 0.55
80 24 0.29
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.23
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGGGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:36808167 original size:13 final size:13
Alignment explanation
Indices: 36808151--36808177 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
36808141 TATGTATTAG
36808151 TTTATTTTATTTA
1 TTTATTTTATTTA
36808164 TTTATTTTATTTA
1 TTTATTTTATTTA
36808177 T
1 T
36808178 AACAAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:36816921 original size:42 final size:41
Alignment explanation
Indices: 36816844--36816991 Score: 151
Period size: 41 Copynumber: 3.6 Consensus size: 41
36816834 CCTTGGTCTT
*
36816844 GAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTTC
1 GAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTCC
* *
36816885 GAAGGGCTTTTTAGAGCCAGTG-TCATAACCGGACTTAGTTCC
1 GAAGGGC-TTTT-GAGCCAGTGCTAATAACCGAACTTAGTTCC
* * * *
36816927 GAAGGGCCTTCGAGCCAGTAGTCTAAT--CCGAGCTT-GGTCTC
1 GAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGTTC-C
*
36816968 GAAGGGCTTTTGAGCCGGTGCTAA
1 GAAGGGCTTTTGAGCCAGTGCTAA
36816992 GAGTCGGACT
Statistics
Matches: 89, Mismatches: 12, Indels: 14
0.77 0.10 0.12
Matches are distributed among these distances:
39 4 0.04
40 12 0.13
41 33 0.37
42 28 0.31
43 12 0.13
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (41 bp):
GAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTCC
Found at i:36816974 original size:41 final size:40
Alignment explanation
Indices: 36816822--36816991 Score: 143
Period size: 41 Copynumber: 4.2 Consensus size: 40
36816812 GCTAATCGGG
* * *
36816822 GTCTAAATCCGACCTTGGTCTTGAAGGGCTTTTGAGCCAGT
1 GTCT-AATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
* *
36816863 G-CTAATAACCGAACTTAGTTTCGAAGGGCTTTTTAGAGCCAGT
1 GTCTAAT--CCGAGCTTAGTCTCGAAGGGC-TTTT-GAGCCAGT
* *
36816906 GTCATAA-CCG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAGT
1 GTC-TAATCCGAG-CTTAGTCT-CGAAGGGCTTTTGAGCCAGT
* *
36816946 AGTCTAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCGGT
1 -GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
36816987 G-CTAA
1 GTCTAA
36816992 GAGTCGGACT
Statistics
Matches: 106, Mismatches: 11, Indels: 26
0.74 0.08 0.18
Matches are distributed among these distances:
39 7 0.07
40 14 0.13
41 49 0.46
42 23 0.22
43 9 0.08
44 1 0.01
45 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
Found at i:36824408 original size:14 final size:14
Alignment explanation
Indices: 36824389--36824417 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
36824379 GAGATAATGG
36824389 ACATGATTTAGTAA
1 ACATGATTTAGTAA
36824403 ACATGATTTAGTAA
1 ACATGATTTAGTAA
36824417 A
1 A
36824418 GTATGCAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.34
Consensus pattern (14 bp):
ACATGATTTAGTAA
Found at i:36824935 original size:10 final size:10
Alignment explanation
Indices: 36824920--36824946 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
36824910 ATTAGATAAA
36824920 ATGTTATTAT
1 ATGTTATTAT
36824930 ATGTTATTAT
1 ATGTTATTAT
36824940 ATGTTAT
1 ATGTTAT
36824947 AATTTATATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (10 bp):
ATGTTATTAT
Done.