Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 114 of 333
Found at i:36835847 original size:24 final size:24
Alignment explanation
Indices: 36835820--36835921 Score: 61
Period size: 24 Copynumber: 4.2 Consensus size: 24
36835810 GTATATGCAT
36835820 GAATGAAAAGGGCACTATGTGTGC
1 GAATGAAAAGGGCACTATGTGTGC
*
36835844 GAATG---GGGCAGCACTATGTGTGC
1 GAATGAAAAGG--GCACTATGTGTGC
* * *
36835867 GTATAGAAAAGCTAGTACTATGTGTGC
1 GAAT-GAAAAG--GGCACTATGTGTGC
*
36835894 GAAT-AATATA-TGCACTATGTGTGC
1 GAATGAA-A-AGGGCACTATGTGTGC
36835918 GAAT
1 GAAT
36835922 TTATTAACCG
Statistics
Matches: 60, Mismatches: 8, Indels: 20
0.68 0.09 0.23
Matches are distributed among these distances:
21 2 0.03
23 16 0.27
24 22 0.37
25 2 0.03
26 1 0.02
27 17 0.28
ACGTcount: A:0.31, C:0.13, G:0.29, T:0.26
Consensus pattern (24 bp):
GAATGAAAAGGGCACTATGTGTGC
Found at i:36838595 original size:52 final size:52
Alignment explanation
Indices: 36838512--36838636 Score: 214
Period size: 52 Copynumber: 2.4 Consensus size: 52
36838502 AATGATGATA
*
36838512 AAAGGAAAAGAAAGAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
1 AAAGAAAAAG-AAG-AAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
36838566 AAAGAAAAAGAAGAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
1 AAAGAAAAAGAAGAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
*
36838618 AAAGAAAAAGAAGGAAAAA
1 AAAGAAAAAGAAGAAAAAA
36838637 GAGCTTTGAG
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
52 57 0.83
53 3 0.04
54 9 0.13
ACGTcount: A:0.53, C:0.10, G:0.22, T:0.16
Consensus pattern (52 bp):
AAAGAAAAAGAAGAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAG
Found at i:36839933 original size:40 final size:40
Alignment explanation
Indices: 36839877--36840094 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
36839867 TGGATGATAA
*
36839877 CCGGGCTAAGTCCCGAAGGCATTTGCACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
*
36839917 TCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
*
36839957 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
*
36839997 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
* * * *
36840037 CCGGGCTATGTCCCAAAGGTATTCG-AGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTA-CGAGTTA-CTATAT
* *
36840077 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
36840095 TACTTGGCTT
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 14 0.09
40 149 0.91
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
Found at i:36845077 original size:37 final size:36
Alignment explanation
Indices: 36844987--36845087 Score: 157
Period size: 36 Copynumber: 2.8 Consensus size: 36
36844977 AGCTCAGACG
* * *
36844987 AAATCTCCACACGAAATTATCGGGTCTTACCCGGAC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
*
36845023 AAACCTCCACACGTAGTCATCGGGTCTTACCCGGAC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
36845059 ATAATCTCCACACGTAGTCATCGGGTCTT
1 A-AATCTCCACACGTAGTCATCGGGTCTT
36845088 TAGAGCTCGG
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
36 33 0.56
37 26 0.44
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (36 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
Found at i:36845284 original size:47 final size:47
Alignment explanation
Indices: 36845206--36845373 Score: 264
Period size: 47 Copynumber: 3.6 Consensus size: 47
36845196 CCCTTCGGGA
* * * * * *
36845206 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36845253 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36845300 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36845347 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
36845374 TATTCAAATA
Statistics
Matches: 111, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 111 1.00
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36847306 original size:13 final size:13
Alignment explanation
Indices: 36847288--36847312 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36847278 TACTAAATTT
36847288 TCATGGATTCAAA
1 TCATGGATTCAAA
36847301 TCATGGATTCAA
1 TCATGGATTCAA
36847313 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:36851833 original size:40 final size:40
Alignment explanation
Indices: 36851778--36851853 Score: 152
Period size: 40 Copynumber: 1.9 Consensus size: 40
36851768 TGGATGATAA
36851778 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
36851818 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
36851854 GTGACAGCCC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:36853686 original size:40 final size:40
Alignment explanation
Indices: 36853524--36853679 Score: 235
Period size: 40 Copynumber: 3.9 Consensus size: 40
36853514 TATTCGGATG
36853524 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
36853564 A-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACC
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
36853604 A-AATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACT
1 ATAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
36853644 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
36853680 AGCTATATCC
Statistics
Matches: 105, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 102 0.97
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:36861639 original size:40 final size:40
Alignment explanation
Indices: 36861477--36861632 Score: 235
Period size: 40 Copynumber: 3.9 Consensus size: 40
36861467 TATTCGGATG
36861477 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
36861517 A-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACC
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
36861557 A-AATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACT
1 ATAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
36861597 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
36861633 AGCTATATCC
Statistics
Matches: 105, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 102 0.97
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:36863065 original size:40 final size:40
Alignment explanation
Indices: 36863008--36863156 Score: 169
Period size: 40 Copynumber: 3.8 Consensus size: 40
36862998 GGGGTGTTAC
*
36863008 AGTTACTATAT-TCGGGCTAAGTCCCGAATGCATTTGTGCG
1 AGTTACTATATCT-GGGCTAAGTCCCGAAGGCATTTGTGCG
*
36863048 AGTTAGTATATCTGGGCTAAGTCCCGAAGGCATTTGTGCG
1 AGTTACTATATCTGGGCTAAGTCCCGAAGGCATTTGTGCG
* * * * *
36863088 AGTTACTATATCCGGGCTATGTCCCGAAGGTATTCGAGCG
1 AGTTACTATATCTGGGCTAAGTCCCGAAGGCATTTGTGCG
* * *
36863128 AG-TAGCTATATC-CGGTTAAATCCCGAAGG
1 AGTTA-CTATATCTGGGCTAAGTCCCGAAGG
36863157 TACTTGGCTT
Statistics
Matches: 95, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 15 0.16
40 79 0.83
41 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
AGTTACTATATCTGGGCTAAGTCCCGAAGGCATTTGTGCG
Found at i:36866763 original size:64 final size:64
Alignment explanation
Indices: 36866682--36866865 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
36866672 AGACATTATG
* * *
36866682 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACTATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
36866746 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
36866811 AA
63 AA
* * * *
36866813 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
36866866 CGAACTATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 21 0.22
65 7 0.07
66 18 0.19
67 31 0.32
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:36885459 original size:100 final size:100
Alignment explanation
Indices: 36885286--36885491 Score: 376
Period size: 100 Copynumber: 2.1 Consensus size: 100
36885276 TTCCTATCAA
* * * *
36885286 AATTAACAAAAATTTCATGATTTTCATCACCAAAATTGTCCACTATGAAATAAATTGTTCTATTT
1 AATTAAAAAAAATTTCATGATTTTAATCACCAAAATCGTCCACTATGAAATAAATTATTCTATTT
36885351 ACAATTTAAATCCCTTAGTTTAACATTCCATAACC
66 ACAATTTAAATCCCTTAGTTTAACATTCCATAACC
36885386 AATTAAAAAAAATTTCATGATTTTAATCACCAAAATCGTCCACTATGAAATAAATTATTCTATTT
1 AATTAAAAAAAATTTCATGATTTTAATCACCAAAATCGTCCACTATGAAATAAATTATTCTATTT
36885451 ACAATTTAAATCCCTTAGTTTAACATTCCATAACC
66 ACAATTTAAATCCCTTAGTTTAACATTCCATAACC
36885486 AATTAA
1 AATTAA
36885492 CTCTTTTAAC
Statistics
Matches: 102, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 102 1.00
ACGTcount: A:0.41, C:0.18, G:0.04, T:0.36
Consensus pattern (100 bp):
AATTAAAAAAAATTTCATGATTTTAATCACCAAAATCGTCCACTATGAAATAAATTATTCTATTT
ACAATTTAAATCCCTTAGTTTAACATTCCATAACC
Found at i:36888150 original size:42 final size:42
Alignment explanation
Indices: 36888075--36888190 Score: 119
Period size: 42 Copynumber: 2.8 Consensus size: 42
36888065 TCATATGAGT
* * * ***
36888075 TTCCGTTTAACCCTAATGGGTTTAC-GTTCAGCTCTTTTGAGC
1 TTCCGTTTAACCCTTATGGGTTT-CTGTTTAGCTCCTACAAGC
*
36888117 TTCAC-TTTAACCCTTTTGGGTTTCTGTTTAGCTCCTACAAGC
1 TTC-CGTTTAACCCTTATGGGTTTCTGTTTAGCTCCTACAAGC
* *
36888159 TTCCGTTCAACCCTTATGGGTTTCTATTTAGC
1 TTCCGTTTAACCCTTATGGGTTTCTGTTTAGC
36888191 ACTTATATGC
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
41 2 0.03
42 58 0.95
43 1 0.02
ACGTcount: A:0.16, C:0.25, G:0.16, T:0.42
Consensus pattern (42 bp):
TTCCGTTTAACCCTTATGGGTTTCTGTTTAGCTCCTACAAGC
Found at i:36890099 original size:47 final size:47
Alignment explanation
Indices: 36890021--36890126 Score: 133
Period size: 47 Copynumber: 2.2 Consensus size: 47
36890011 ACAAAGGCAT
* * *
36890021 ATTAAAATGTTATACTAAGTAAGACATAATTAATAGACTTAAGACAC
1 ATTAAAATGTTATACTAAATAAGACACAATTAATAAACTTAAGACAC
* * *
36890068 ATTAAAAT-TCTATACTAAATAGGACACAATTAGTAAACTTATGACAC
1 ATTAAAATGT-TATACTAAATAAGACACAATTAATAAACTTAAGACAC
36890115 ATTAAAGATGTT
1 ATTAAA-ATGTT
36890127 CAAATCAATG
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
46 1 0.02
47 45 0.90
48 3 0.06
49 1 0.02
ACGTcount: A:0.47, C:0.11, G:0.10, T:0.31
Consensus pattern (47 bp):
ATTAAAATGTTATACTAAATAAGACACAATTAATAAACTTAAGACAC
Found at i:36903750 original size:23 final size:22
Alignment explanation
Indices: 36903698--36903750 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
36903688 TCCACGTCTT
*
36903698 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
36903720 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
36903743 TTTCTTTT
1 TTTCTTTT
36903751 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:36905060 original size:11 final size:9
Alignment explanation
Indices: 36905020--36905053 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
36905010 TTTTATTGAA
*
36905020 TTTTGTCTT
1 TTTTGACTT
36905029 TTTTGA-TT
1 TTTTGACTT
36905037 TTTTGACTT
1 TTTTGACTT
36905046 TTTTGACT
1 TTTTGACT
36905054 GATTTTTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.09, C:0.09, G:0.12, T:0.71
Consensus pattern (9 bp):
TTTTGACTT
Found at i:36921229 original size:147 final size:147
Alignment explanation
Indices: 36920962--36921255 Score: 579
Period size: 147 Copynumber: 2.0 Consensus size: 147
36920952 GGCATAGGTG
*
36920962 ATATATGGTATATGTTTTGGAAATGGTTGAGTAGTGACACGTGTTTGAGCATGGAAATTGATTAA
1 ATATATGATATATGTTTTGGAAATGGTTGAGTAGTGACACGTGTTTGAGCATGGAAATTGATTAA
36921027 TGGCTTGGAAGATGTATGAATATAATAGCCGTAATATATATGCATATATCCTTAGGAATGTTTGG
66 TGGCTTGGAAGATGTATGAATATAATAGCCGTAATATATATGCATATATCCTTAGGAATGTTTGG
36921092 TTGTTTTAAATGTGATT
131 TTGTTTTAAATGTGATT
36921109 ATATATGATATATGTTTTGGAAATGGTTGAGTAGTGACACGTGTTTGAGCATGGAAATTGATTAA
1 ATATATGATATATGTTTTGGAAATGGTTGAGTAGTGACACGTGTTTGAGCATGGAAATTGATTAA
36921174 TGGCTTGGAAGATGTATGAATATAATAGCCGTAATATATATGCATATATCCTTAGGAATGTTTGG
66 TGGCTTGGAAGATGTATGAATATAATAGCCGTAATATATATGCATATATCCTTAGGAATGTTTGG
36921239 TTGTTTTAAATGTGATT
131 TTGTTTTAAATGTGATT
36921256 CATAATAAAA
Statistics
Matches: 146, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
147 146 1.00
ACGTcount: A:0.31, C:0.06, G:0.24, T:0.39
Consensus pattern (147 bp):
ATATATGATATATGTTTTGGAAATGGTTGAGTAGTGACACGTGTTTGAGCATGGAAATTGATTAA
TGGCTTGGAAGATGTATGAATATAATAGCCGTAATATATATGCATATATCCTTAGGAATGTTTGG
TTGTTTTAAATGTGATT
Found at i:36925599 original size:27 final size:26
Alignment explanation
Indices: 36925551--36925610 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
36925541 GCAAGGTTGC
*
36925551 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
36925578 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
*
36925604 CAAATAT
1 CAGATAT
36925611 ATGTATATGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:36932863 original size:27 final size:26
Alignment explanation
Indices: 36932815--36932874 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
36932805 GCGAGGCTGC
*
36932815 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
36932842 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
36932868 CAGATAT
1 CAGATAT
36932875 ATGTATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:36943120 original size:100 final size:100
Alignment explanation
Indices: 36942947--36943152 Score: 376
Period size: 100 Copynumber: 2.1 Consensus size: 100
36942937 TTCCTATCAA
* * * *
36942947 AATTAACAAAAATTTCATGATTTTCATCACCAAAATTGTCCACTATGAAATAAATTGTTCTATTT
1 AATTAAAAAAAATTTCATGATTTTAATCACCAAAATCGTCCACTATGAAATAAATTATTCTATTT
36943012 ACAATTTAAATCCCTTAGTTTAACATTCCATAACC
66 ACAATTTAAATCCCTTAGTTTAACATTCCATAACC
36943047 AATTAAAAAAAATTTCATGATTTTAATCACCAAAATCGTCCACTATGAAATAAATTATTCTATTT
1 AATTAAAAAAAATTTCATGATTTTAATCACCAAAATCGTCCACTATGAAATAAATTATTCTATTT
36943112 ACAATTTAAATCCCTTAGTTTAACATTCCATAACC
66 ACAATTTAAATCCCTTAGTTTAACATTCCATAACC
36943147 AATTAA
1 AATTAA
36943153 CTCTTTTAAC
Statistics
Matches: 102, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 102 1.00
ACGTcount: A:0.41, C:0.18, G:0.04, T:0.36
Consensus pattern (100 bp):
AATTAAAAAAAATTTCATGATTTTAATCACCAAAATCGTCCACTATGAAATAAATTATTCTATTT
ACAATTTAAATCCCTTAGTTTAACATTCCATAACC
Found at i:36945810 original size:42 final size:42
Alignment explanation
Indices: 36945735--36945850 Score: 119
Period size: 42 Copynumber: 2.8 Consensus size: 42
36945725 TCATATGAGT
* * * ***
36945735 TTCCGTTTAACCCTAATGGGTTTAC-GTTCAGCTCTTTTGAGC
1 TTCCGTTTAACCCTTATGGGTTT-CTGTTTAGCTCCTACAAGC
*
36945777 TTCAC-TTTAACCCTTTTGGGTTTCTGTTTAGCTCCTACAAGC
1 TTC-CGTTTAACCCTTATGGGTTTCTGTTTAGCTCCTACAAGC
* *
36945819 TTCCGTTCAACCCTTATGGGTTTCTATTTAGC
1 TTCCGTTTAACCCTTATGGGTTTCTGTTTAGC
36945851 ACTTATATGC
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
41 2 0.03
42 58 0.95
43 1 0.02
ACGTcount: A:0.16, C:0.25, G:0.16, T:0.42
Consensus pattern (42 bp):
TTCCGTTTAACCCTTATGGGTTTCTGTTTAGCTCCTACAAGC
Found at i:36947759 original size:47 final size:47
Alignment explanation
Indices: 36947681--36947786 Score: 133
Period size: 47 Copynumber: 2.2 Consensus size: 47
36947671 ACAAAGGCAT
* * *
36947681 ATTAAAATGTTATACTAAGTAAGACATAATTAATAGACTTAAGACAC
1 ATTAAAATGTTATACTAAATAAGACACAATTAATAAACTTAAGACAC
* * *
36947728 ATTAAAAT-TCTATACTAAATAGGACACAATTAGTAAACTTATGACAC
1 ATTAAAATGT-TATACTAAATAAGACACAATTAATAAACTTAAGACAC
36947775 ATTAAAGATGTT
1 ATTAAA-ATGTT
36947787 CAAATCAATG
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
46 1 0.02
47 45 0.90
48 3 0.06
49 1 0.02
ACGTcount: A:0.47, C:0.11, G:0.10, T:0.31
Consensus pattern (47 bp):
ATTAAAATGTTATACTAAATAAGACACAATTAATAAACTTAAGACAC
Found at i:36968061 original size:18 final size:19
Alignment explanation
Indices: 36968040--36968083 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
36968030 CAAATGAAGG
36968040 TTCATGTA-A-TTAAAAGAA
1 TTCATGTATACTTAAAAG-A
36968058 TTCAT-TATACTTAAAAGA
1 TTCATGTATACTTAAAAGA
36968076 TTCATGTA
1 TTCATGTA
36968084 CGACATAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 2 0.09
18 12 0.52
19 9 0.39
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.39
Consensus pattern (19 bp):
TTCATGTATACTTAAAAGA
Found at i:36971053 original size:15 final size:13
Alignment explanation
Indices: 36971013--36971046 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
36971003 AATTTGATCA
*
36971013 AAAAAATTCGCAT
1 AAAAAATTCGTAT
36971026 AAAAAATTCGTAT
1 AAAAAATTCGTAT
36971039 AAAAAATT
1 AAAAAATT
36971047 TCAGTATCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.59, C:0.09, G:0.06, T:0.26
Consensus pattern (13 bp):
AAAAAATTCGTAT
Found at i:36972741 original size:15 final size:15
Alignment explanation
Indices: 36972721--36972768 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
36972711 TCAAAGATGG
36972721 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
36972736 GTTTATGTAGATGGA
1 GTTTATGGATATGAA
*
36972751 -TTTATGGATATAAA
1 GTTTATGGATATGAA
36972765 GTTT
1 GTTT
36972769 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:36972748 original size:29 final size:29
Alignment explanation
Indices: 36972715--36972774 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
36972705 AAGGATTCAA
* *
36972715 AGATGGGTTTATGGATATGAAGTTTATGT
1 AGATGGATTTATGGATATAAAGTTTATGT
*
36972744 AGATGGATTTATGGATATAAAGTTTTTGT
1 AGATGGATTTATGGATATAAAGTTTATGT
36972773 AG
1 AG
36972775 GTTTGGTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.28, T:0.42
Consensus pattern (29 bp):
AGATGGATTTATGGATATAAAGTTTATGT
Found at i:36975278 original size:50 final size:49
Alignment explanation
Indices: 36975118--36975387 Score: 180
Period size: 46 Copynumber: 5.7 Consensus size: 49
36975108 TCATTTGTGT
* * * *
36975118 GCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGAC-CTCATGACGT-A-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GAT-ATGTGATA
* *
36975164 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGTG-T-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGATATGTGATA
* * *
36975210 -C-AGTGTAATACCCTGTCTGGGACATGGCATTGGCACGGATATGTGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GATATGTGATA
* *
36975258 GCTAGTGTAAGACCATGTCTGGGACTTGGCATCGGCCTCGAT-T-TCGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CACGATATGT-GATA
* * *
36975307 GTTAGTGTAAGACCATGTTTAGGACATGGCATC-G-AC--T-TGATGAATGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGATATG-TG-AT-A
* * *
36975354 GCCAGTGCAAGACCATGTCTGAGACATGGCATCG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCG
36975388 ACATTATACC
Statistics
Matches: 180, Mismatches: 26, Indels: 34
0.75 0.11 0.14
Matches are distributed among these distances:
44 10 0.06
45 17 0.09
46 52 0.29
47 30 0.17
48 3 0.02
49 35 0.19
50 31 0.17
51 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.26
Consensus pattern (49 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGATATGTGATA
Found at i:36975319 original size:49 final size:48
Alignment explanation
Indices: 36975167--36975387 Score: 163
Period size: 49 Copynumber: 4.6 Consensus size: 48
36975157 GACGTAAGCC
** *
36975167 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CTACGAGATG-T-GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGATTTGATAGTT
* * * * *
36975211 AGTGTAATACCCTGTCTGGGACATGGCATTGGCAC-GGATATGTGATAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAT-T-TGATAGTT
*
36975261 AGTGTAAGACCATGTCTGGGACTTGGCATCGGCCTCGATTTCGATAGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTT-GATAGTT
* * * * **
36975310 AGTGTAAGACCATGTTTAGGACATGGCATC-GACTTGA--TGAATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTG-AT-AGTT
* *
36975357 AGTGCAAGACCATGTCTGAGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
36975388 ACATTATACC
Statistics
Matches: 139, Mismatches: 25, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
44 8 0.06
45 14 0.10
46 11 0.08
47 28 0.20
48 9 0.06
49 36 0.26
50 33 0.24
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTGATAGTT
Found at i:36978392 original size:30 final size:30
Alignment explanation
Indices: 36978358--36978454 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
36978348 TAAACTAAAA
*
36978358 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
* * * * * * *
36978388 TGAGCTGAGATTAAACTCCTAAGCTGAAGC
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
*
36978418 TGAGCTAAGGTTTAGCTCGTGAGCTAAA-T
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
36978447 ATGAGCTA
1 -TGAGCTA
36978455 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
Found at i:36984439 original size:27 final size:26
Alignment explanation
Indices: 36984417--36984542 Score: 71
Period size: 27 Copynumber: 4.7 Consensus size: 26
36984407 TTAGTTTACC
* *
36984417 AAATTACTGAAATATCCTCAGTTGT-C
1 AAATTACTGAAATACCCTCAGTT-TAA
* *
36984443 AAATTAC-CAAAGTACCCTCGGTTTATA
1 AAATTACTGAAA-TACCCTCAGTTTA-A
** * *
36984470 AAATTACCCAAATATCCTC-GATTTGTA
1 AAATTACTGAAATACCCTCAG-TTT-AA
*
36984497 AAATTA-TCGAAATACCCTCAGTTTGCA
1 AAATTACT-GAAATACCCTCAGTTT-AA
*
36984524 AAATTATTGAAATACCCTC
1 AAATTACTGAAATACCCTC
36984543 GACATGTAAA
Statistics
Matches: 81, Mismatches: 10, Indels: 17
0.75 0.09 0.16
Matches are distributed among these distances:
25 4 0.05
26 17 0.21
27 54 0.67
28 6 0.07
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.32
Consensus pattern (26 bp):
AAATTACTGAAATACCCTCAGTTTAA
Found at i:36984527 original size:54 final size:53
Alignment explanation
Indices: 36984410--36984585 Score: 185
Period size: 54 Copynumber: 3.3 Consensus size: 53
36984400 GAATACTTTA
* * * * *
36984410 GTTTACCAAATTACTGAAATATCCTC-AGTTGTCAAATTACCAAAGTACCCTC
1 GTTTACAAAATTACCGAAATATCCTCGACTTGTAAAATTATCAAAGTACCCTC
* * *
36984462 GGTTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTATCGAAA-TACCCTC
1 -GTTTACAAAATTACCGAAATATCCTCGACTTGTAAAATTATC-AAAGTACCCTC
* ** * *
36984516 AGTTTGCAAAATTATTGAAATACCCTCGACATGTAAAATTATCAAAGTACCCTC
1 -GTTTACAAAATTACCGAAATATCCTCGACTTGTAAAATTATCAAAGTACCCTC
36984570 GATTTACAAAATTACC
1 G-TTTACAAAATTACC
36984586 ATTTTACCCT
Statistics
Matches: 100, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
53 26 0.26
54 71 0.71
55 3 0.03
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.31
Consensus pattern (53 bp):
GTTTACAAAATTACCGAAATATCCTCGACTTGTAAAATTATCAAAGTACCCTC
Found at i:36984553 original size:27 final size:27
Alignment explanation
Indices: 36984455--36984583 Score: 109
Period size: 27 Copynumber: 4.8 Consensus size: 27
36984445 ATTACCAAAG
* * ***
36984455 TACCCTCGGTTTATAAAATTACCCAAA
1 TACCCTCGATTTGTAAAATTATTGAAA
* *
36984482 TATCCTCGATTTGTAAAATTATCGAAA
1 TACCCTCGATTTGTAAAATTATTGAAA
*
36984509 TACCCTC-AGTTTGCAAAATTATTGAAA
1 TACCCTCGA-TTTGTAAAATTATTGAAA
** *
36984536 TACCCTCGACATGTAAAATTA-TCAAA
1 TACCCTCGATTTGTAAAATTATTGAAA
**
36984562 GTACCCTCGATTTACAAAATTA
1 -TACCCTCGATTTGTAAAATTA
36984584 CCATTTTACC
Statistics
Matches: 83, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
26 5 0.06
27 77 0.93
28 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTATTGAAA
Found at i:36984610 original size:81 final size:81
Alignment explanation
Indices: 36984525--36984773 Score: 187
Period size: 81 Copynumber: 3.1 Consensus size: 81
36984515 CAGTTTGCAA
* **
36984525 AATTATTGAAATACCCTCGACATGTAAAATTA-TCAAAGTACCCTCGATTTACAAAATTACCATT
1 AATTACTGAAATACCCTCGACATACAAAATTACT-AAAGTACCCTCGATTTACAAAATTACCATT
36984589 TTACCCTTGATTTATAG
65 TTACCCTTGATTTATAG
*** ** *** * *
36984606 AATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAAAGTTACTATTT
1 AATTACTGAAATACCCTCGACATACAAAATTACTAAAGTACCCTCGATTTACAAAATTACCATTT
* * *
36984671 TACCCTTGAATTACAA
66 TACCCTTGATTTATAG
** ** * ***** * * *
36984687 AATTACT-ATTTTACCCTCGATTTACAGAATTACCGTTCTACCTTCGATTTATAGAATTACCATT
1 AATTACTGA-AATACCCTCGACATACAAAATTACTAAAGTACCCTCGATTTACAAAATTACCATT
* *
36984751 TTACCCTCGATTTAGAG
65 TTACCCTTGATTTATAG
36984768 AATTAC
1 AATTAC
36984774 CATTTTACCC
Statistics
Matches: 136, Mismatches: 30, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
81 135 0.99
82 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (81 bp):
AATTACTGAAATACCCTCGACATACAAAATTACTAAAGTACCCTCGATTTACAAAATTACCATTT
TACCCTTGATTTATAG
Found at i:36984793 original size:27 final size:27
Alignment explanation
Indices: 36984563--36984791 Score: 289
Period size: 27 Copynumber: 8.5 Consensus size: 27
36984553 ATTATCAAAG
*
36984563 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * **
36984590 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
36984617 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
36984644 TACCCTCGATTTACA-AAGTTACTATTT
1 TACCCTCGATTTACAGAA-TTACCATTT
* * * *
36984671 TACCCTTGAATTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
36984698 TACCCTCGATTTACAGAATTACCGTTC
1 TACCCTCGATTTACAGAATTACCATTT
* *
36984725 TACCTTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
36984752 TACCCTCGATTTAGAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
36984779 TACCCTCGATTTA
1 TACCCTCGATTTA
36984792 GAATTTCTAA
Statistics
Matches: 177, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 2 0.01
27 173 0.98
28 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:36984822 original size:27 final size:26
Alignment explanation
Indices: 36984801--36985039 Score: 286
Period size: 27 Copynumber: 9.0 Consensus size: 26
36984791 AGAATTTCTA
*
36984801 AAATA-CCCTAGTAAGGTAGAATTACCG
1 AAATACCCCT-GTAGGGTAGAATTA-CG
36984828 -AATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTA-CG
36984854 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTA-CG
*
36984881 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTA-CG
36984908 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTA-CG
* *
36984935 CAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTA-CG
*
36984962 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTAC-G
*
36984989 AAATACCCCTGTAGGGTGGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTA-CG
* * * *
36985016 AGATA-CCTTGTGGGGTAAAATTAC
1 AAATACCCCTGTAGGGTAGAATTAC
36985040 CATTTTGCCC
Statistics
Matches: 189, Mismatches: 19, Indels: 10
0.87 0.09 0.05
Matches are distributed among these distances:
25 1 0.01
26 35 0.19
27 152 0.80
28 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.24
Consensus pattern (26 bp):
AAATACCCCTGTAGGGTAGAATTACG
Found at i:36984902 original size:54 final size:54
Alignment explanation
Indices: 36984801--36985022 Score: 333
Period size: 54 Copynumber: 4.1 Consensus size: 54
36984791 AGAATTTCTA
* * *
36984801 AAATA-CCCTAGTAAGGTAGAATTACCG-AATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCT-GTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAATTACCG
36984854 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAATTACCG
*
36984908 AAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAATTACCG
* * *
36984962 AAATACCCCTGTAGGGTAGAATTA-CTAAAATACCCCTGTAGGGTGGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTATC-GAAATACCCCTATAGGGTAGAATTACCG
*
36985016 AGATACC
1 AAATACC
36985023 TTGTGGGGTA
Statistics
Matches: 157, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
53 21 0.13
54 136 0.87
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (54 bp):
AAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAATTACCG
Found at i:36984940 original size:81 final size:81
Alignment explanation
Indices: 36984801--36985022 Score: 331
Period size: 81 Copynumber: 2.8 Consensus size: 81
36984791 AGAATTTCTA
*
36984801 AAATA-CCCTAGTAAGGTAGAATTACCG-AATACCCCTGTAGGGTAGAATTACCGAAATACCCCT
1 AAATACCCCTA-TAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCT
* *
36984864 GTAGGGTAGAATTATCG
65 ATAGGGTAGAATTACCG
* *
36984881 AAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTA
1 AAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTA
36984946 TAGGGTAGAATTACCG
66 TAGGGTAGAATTACCG
* ** * *
36984962 AAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTGGAATTACCGAGATACC
1 AAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACC
36985023 TTGTGGGGTA
Statistics
Matches: 128, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
80 20 0.16
81 108 0.84
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (81 bp):
AAATACCCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTA
TAGGGTAGAATTACCG
Found at i:36985374 original size:67 final size:67
Alignment explanation
Indices: 36985266--36985419 Score: 281
Period size: 67 Copynumber: 2.3 Consensus size: 67
36985256 GAGGAAGCGT
* *
36985266 TCTGGCAGCCTCACTGCAATCTAGTGGCTTCGCCACATATATCTGTTCTGGTGAGTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTAGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
36985331 TA
66 TA
*
36985333 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTAGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
36985398 TA
66 TA
36985400 TCTGGCAGCCTCGCTGCAAT
1 TCTGGCAGCCTCGCTGCAAT
36985420 TTCTGTGGTG
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 84 1.00
ACGTcount: A:0.19, C:0.29, G:0.22, T:0.31
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTAGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
TA
Found at i:36985390 original size:27 final size:26
Alignment explanation
Indices: 36985352--36985403 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
36985342 CTCGCTGCAA
*
36985352 TCTGGTGGCTTCGCCACATATATCTGT
1 TCTGGTGACTTCGCCACA-ATATCTGT
*
36985379 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACTTCGCCACAATATCTG
36985404 GCAGCCTCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (26 bp):
TCTGGTGACTTCGCCACAATATCTGT
Found at i:36985531 original size:6 final size:6
Alignment explanation
Indices: 36985522--36985705 Score: 144
Period size: 6 Copynumber: 29.8 Consensus size: 6
36985512 TTGCATTCAC
* * * *
36985522 ATTCTG ATTCTA ATTCTG -TTACCTG ATACTG ATTTTG ATTCT- ATTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* *
36985572 ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG -TTACTTG ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG
* * * *
36985621 ATTCTG -TTACCTA ATTCTG ATTCTG GTTCTG ATTTTG ATTCTG -TCACCTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
*
36985671 ATTCTA ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
36985706 AGTTATGATA
Statistics
Matches: 142, Mismatches: 21, Indels: 30
0.74 0.11 0.16
Matches are distributed among these distances:
5 10 0.07
6 111 0.78
7 13 0.09
8 8 0.06
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:36985564 original size:31 final size:30
Alignment explanation
Indices: 36985522--36985694 Score: 111
Period size: 31 Copynumber: 5.6 Consensus size: 30
36985512 TTGCATTCAC
36985522 ATTCTGATTCTAATTCTGTTACCTGATACTG
1 ATTCTGATTCT-ATTCTGTTACCTGATACTG
* * *
36985553 ATTTTGATTCTATTACCTAATT--CTGATTCTG
1 ATTCTGATTCTATT--CT-GTTACCTGATACTG
* *
36985584 GTTCTGATTCTGATTCTGTTACTTGATACTG
1 ATTCTGATTCT-ATTCTGTTACCTGATACTG
* * *
36985615 ATTCTGATTCTGTTACCTAATT--CTGATTCTG
1 ATTCTGATTCTATT--CT-GTTACCTGATACTG
* * * * *
36985646 GTTCTGATTTTGATTCTGTCACCTGATTCTA
1 ATTCTGATTCT-ATTCTGTTACCTGATACTG
36985677 ATTCTGATTCTGATTCTG
1 ATTCTGATTCT-ATTCTG
36985695 ATTCTGATTC
Statistics
Matches: 109, Mismatches: 21, Indels: 24
0.71 0.14 0.16
Matches are distributed among these distances:
29 3 0.03
30 9 0.08
31 84 0.77
32 9 0.08
33 4 0.04
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTATTCTGTTACCTGATACTG
Found at i:36985588 original size:25 final size:25
Alignment explanation
Indices: 36985522--36985588 Score: 80
Period size: 25 Copynumber: 2.7 Consensus size: 25
36985512 TTGCATTCAC
* * *
36985522 ATTCTGATTCTAATTCTGTTACCTG
1 ATTCTGATTCTGATTCTATTACCTA
* *
36985547 ATACTGATTTTGATTCTATTACCTA
1 ATTCTGATTCTGATTCTATTACCTA
*
36985572 ATTCTGATTCTGGTTCT
1 ATTCTGATTCTGATTCT
36985589 GATTCTGATT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.21, C:0.18, G:0.12, T:0.49
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTATTACCTA
Found at i:36985591 original size:37 final size:37
Alignment explanation
Indices: 36985544--36985626 Score: 103
Period size: 37 Copynumber: 2.2 Consensus size: 37
36985534 ATTCTGTTAC
* * *
36985544 CTGATACTGATTTTGATTCTATTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTATTACCTAATACTGATT
* * * *
36985581 CTGGTTCTGATTCTGATTCTGTTACTTGATACTGATT
1 CTGATTCTGATTCTGATTCTATTACCTAATACTGATT
36985618 CTGATTCTG
1 CTGATTCTG
36985627 TTACCTAATT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.19, C:0.17, G:0.16, T:0.48
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTATTACCTAATACTGATT
Found at i:36985617 original size:25 final size:25
Alignment explanation
Indices: 36985587--36985651 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
36985577 GATTCTGGTT
* *
36985587 CTGATTCTGATTCTGTTACTTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
36985612 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
*
36985637 CTGATTCTGGTTCTG
1 CTGATTCTGATTCTG
36985652 ATTTTGATTC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.17, C:0.18, G:0.17, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:36985623 original size:62 final size:62
Alignment explanation
Indices: 36985523--36985714 Score: 262
Period size: 62 Copynumber: 3.1 Consensus size: 62
36985513 TGCATTCACA
* *
36985523 TTCTGATTCTAATTCTGTTACCTGATACTGATTTTGATTCTATTACCTAATTCTGATTCTGG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTATTACCTAATTCTGATTCTGG
* *
36985585 TTCTGATTCTGATTCTGTTACTTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTATTACCTAATTCTGATTCTGG
* * * * * *
36985647 TTCTGATTTTGATTCTGTCACCTGATTCTAATTCTGATTCTGATT--CTGATTCTGATTCTAG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCT-ATTACCTAATTCTGATTCTGG
*
36985708 TTATGAT
1 TTCTGAT
36985715 AATGTTTCTT
Statistics
Matches: 116, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
61 20 0.17
62 94 0.81
63 2 0.02
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (62 bp):
TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTATTACCTAATTCTGATTCTGG
Found at i:36985653 original size:37 final size:37
Alignment explanation
Indices: 36985607--36985700 Score: 134
Period size: 37 Copynumber: 2.5 Consensus size: 37
36985597 TTCTGTTACT
* * *
36985607 TGATACTGATTCTGATTCTGTTACCTAATTCTGATTC
1 TGATTCTGATTCTGATTCTGTCACCTAATTCTAATTC
* * *
36985644 TGGTTCTGATTTTGATTCTGTCACCTGATTCTAATTC
1 TGATTCTGATTCTGATTCTGTCACCTAATTCTAATTC
36985681 TGATTCTGATTCTGATTCTG
1 TGATTCTGATTCTGATTCTG
36985701 ATTCTAGTTA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48
Consensus pattern (37 bp):
TGATTCTGATTCTGATTCTGTCACCTAATTCTAATTC
Found at i:36985714 original size:18 final size:18
Alignment explanation
Indices: 36985522--36985703 Score: 88
Period size: 19 Copynumber: 9.8 Consensus size: 18
36985512 TTGCATTCAC
* *
36985522 ATTCTGATTCTAATTCTG
1 ATTCTGATTCTGATTATG
* *
36985540 -TTACCTGATACTGATTTTG
1 ATT--CTGATTCTGATTATG
* *
36985559 ATTCT-ATTACCTAATTCTG
1 ATTCTGATT--CTGATTATG
* *
36985578 ATTCTGGTTCTGATTCTG
1 ATTCTGATTCTGATTATG
36985596 ATTCTG-TTACTTGA-TACTG
1 ATTCTGATT-C-TGATTA-TG
*
36985615 ATTCTGATTCTG-TTACCTA
1 ATTCTGATTCTGATTA--TG
* *
36985634 ATTCTGATTCTGGTTCTG
1 ATTCTGATTCTGATTATG
* *
36985652 ATTTTGATTCTG-TCACCTG
1 ATTCTGATTCTGATTA--TG
* *
36985671 ATTCTAATTCTGATTCTG
1 ATTCTGATTCTGATTATG
36985689 ATTCTGATTCTGATT
1 ATTCTGATTCTGATT
36985704 CTAGTTATGA
Statistics
Matches: 128, Mismatches: 20, Indels: 32
0.71 0.11 0.18
Matches are distributed among these distances:
17 7 0.05
18 50 0.39
19 62 0.48
20 9 0.07
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (18 bp):
ATTCTGATTCTGATTATG
Found at i:36995490 original size:20 final size:20
Alignment explanation
Indices: 36995465--36995503 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
36995455 TCTGTAGAAA
36995465 AAGAAAAAGAAAAAAAAGAC
1 AAGAAAAAGAAAAAAAAGAC
*
36995485 AAGAAAAAGAAAGAAAAGA
1 AAGAAAAAGAAAAAAAAGA
36995504 GTGAGAAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.79, C:0.03, G:0.18, T:0.00
Consensus pattern (20 bp):
AAGAAAAAGAAAAAAAAGAC
Found at i:36995503 original size:15 final size:14
Alignment explanation
Indices: 36995462--36995503 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
36995452 GAGTCTGTAG
36995462 AAAAAGAAAAAGAAA
1 AAAAAG-AAAAGAAA
*
36995477 AAAAAGACAAGAAA
1 AAAAAGAAAAGAAA
36995491 AAGAAAGAAAAGA
1 AA-AAAGAAAAGA
36995504 GTGAGAAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 9 0.38
15 15 0.62
ACGTcount: A:0.81, C:0.02, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAAGAAA
Found at i:36997715 original size:27 final size:27
Alignment explanation
Indices: 36997685--36997828 Score: 173
Period size: 27 Copynumber: 5.3 Consensus size: 27
36997675 GGCAAAATGG
* * *
36997685 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
36997712 TAATTCTACCTTACAGGGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
36997738 GTATTTCTACCCTACAAGGGTATTTCGG
1 -TAATTCTACCCTACAAGGGTATTTCGA
* * * *
36997766 TAATTCTATCCTATAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
36997793 TAATTCTACCCTACAAGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
36997820 TAATTCTAC
1 TAATTCTAC
36997829 AACTTATCCA
Statistics
Matches: 98, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 97 0.99
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:36997756 original size:54 final size:53
Alignment explanation
Indices: 36997687--36997828 Score: 205
Period size: 54 Copynumber: 2.7 Consensus size: 53
36997677 CAAAATGGTA
* *
36997687 ATTT-TACCCCACAAGGGTATCTCGATAATTCTACCTTACAGGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACC-TACAGGGGTATTTCAGT
* * *
36997740 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTATAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTA-CCTACAGGGGTATTTCAGT
*
36997794 AATTCTACCCTACAAGGGTATTTCGATAATTCTAC
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTAC
36997829 AACTTATCCA
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
53 5 0.06
54 73 0.91
55 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (53 bp):
ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCTACAGGGGTATTTCAGT
Found at i:37005051 original size:64 final size:64
Alignment explanation
Indices: 37004950--37005079 Score: 208
Period size: 64 Copynumber: 2.0 Consensus size: 64
37004940 TTGATTCTTT
* * *
37004950 ATGGCATTTTGATTACATAAATGGGCAGTTTGCATTTAACTGATTTAGTCACTACTTTTGATGC
1 ATGGCATTTTGATTACATAAATGGGCAGTTTGCATTTAACTGATTCAGCCACTACTTTCGATGC
*
37005014 ATGGCATTTTGATTTA-ATAAATGGGCAGTTTGCATTTAACTGATTCAGCCCCTACTTTCGATGC
1 ATGGCATTTTGA-TTACATAAATGGGCAGTTTGCATTTAACTGATTCAGCCACTACTTTCGATGC
37005078 AT
1 AT
37005080 TTATGAACTG
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
64 58 0.95
65 3 0.05
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.39
Consensus pattern (64 bp):
ATGGCATTTTGATTACATAAATGGGCAGTTTGCATTTAACTGATTCAGCCACTACTTTCGATGC
Found at i:37008131 original size:16 final size:16
Alignment explanation
Indices: 37008073--37008131 Score: 66
Period size: 16 Copynumber: 3.6 Consensus size: 16
37008063 GAAACTTTTT
37008073 TCCCCAAATTC-TAAAA
1 TCCCCAAA-TCGTAAAA
* *
37008089 TCCCCAACTCGTCAAAT
1 TCCCCAAATCGT-AAAA
*
37008106 TCCCCAAATCGTGAAA
1 TCCCCAAATCGTAAAA
37008122 TCCCCAAATC
1 TCCCCAAATC
37008132 CATAACATCT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
15 2 0.06
16 20 0.56
17 14 0.39
ACGTcount: A:0.36, C:0.37, G:0.05, T:0.22
Consensus pattern (16 bp):
TCCCCAAATCGTAAAA
Found at i:37011134 original size:43 final size:43
Alignment explanation
Indices: 37011067--37011152 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
37011057 ATCACCAGTA
* * *
37011067 TCGCACCCATTATGAACTCAGACCACTCAACGAGCTTGAATGC
1 TCGCACCCATAATGAACCCAGACCACTCAACGAGCTCGAATGC
* *
37011110 TCGCATCCATAATGAACCCGGACCACTCAACGAGCTCGAATGC
1 TCGCACCCATAATGAACCCAGACCACTCAACGAGCTCGAATGC
37011153 CACATATATC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.30, C:0.34, G:0.17, T:0.19
Consensus pattern (43 bp):
TCGCACCCATAATGAACCCAGACCACTCAACGAGCTCGAATGC
Found at i:37013047 original size:174 final size:174
Alignment explanation
Indices: 37012757--37013084 Score: 629
Period size: 174 Copynumber: 1.9 Consensus size: 174
37012747 AACTCAAGGT
37012757 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
37012822 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
37012887 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTTGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTTGCAC
37012931 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
37012996 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
*
37013061 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
37013085 TGTACAATTT
Statistics
Matches: 151, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 151 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTTGCAC
Found at i:37013076 original size:29 final size:30
Alignment explanation
Indices: 37013037--37013115 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
37013027 CTTAATAATC
37013037 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
37013067 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
37013096 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
37013116 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:37025893 original size:23 final size:23
Alignment explanation
Indices: 37025866--37025937 Score: 117
Period size: 23 Copynumber: 3.1 Consensus size: 23
37025856 CATCCTTAAT
*
37025866 CCTTACAACCAAATCGTGAAATC
1 CCTTAGAACCAAATCGTGAAATC
*
37025889 CCTTAGAACCAAATTGTGAAATC
1 CCTTAGAACCAAATCGTGAAATC
*
37025912 CCTTAGAACCAAATCATGAAATC
1 CCTTAGAACCAAATCGTGAAATC
37025935 CCT
1 CCT
37025938 AATCTTTCCA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.39, C:0.28, G:0.10, T:0.24
Consensus pattern (23 bp):
CCTTAGAACCAAATCGTGAAATC
Found at i:37029299 original size:20 final size:20
Alignment explanation
Indices: 37029274--37029313 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
37029264 AATTATATGA
*
37029274 ATATAAATATACGCTTTCTT
1 ATATAAATATACGATTTCTT
*
37029294 ATATAAATATTCGATTTCTT
1 ATATAAATATACGATTTCTT
37029314 TTTTTTTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.35, C:0.12, G:0.05, T:0.47
Consensus pattern (20 bp):
ATATAAATATACGATTTCTT
Found at i:37031826 original size:7 final size:7
Alignment explanation
Indices: 37031816--37031847 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
37031806 TAAAATAGAA
37031816 AAATAAT
1 AAATAAT
37031823 AAATAAT
1 AAATAAT
37031830 AAATAAT
1 AAATAAT
37031837 AAATAAAT
1 AAAT-AAT
37031845 AAA
1 AAA
37031848 ACTAAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (7 bp):
AAATAAT
Found at i:37031857 original size:22 final size:21
Alignment explanation
Indices: 37031800--37031857 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 21
37031790 TAATGTCCTC
37031800 TAAAACTAAAATAGAAAAATAA
1 TAAAACTAAAATA-AAAAATAA
* *
37031822 TAAATAAT-AAATAATAAATAAA
1 TAAA-ACTAAAATAAAAAAT-AA
37031844 TAAAACTAAAATAA
1 TAAAACTAAAATAA
37031858 CATAAAAGTG
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 7 0.23
22 21 0.70
23 2 0.07
ACGTcount: A:0.72, C:0.03, G:0.02, T:0.22
Consensus pattern (21 bp):
TAAAACTAAAATAAAAAATAA
Found at i:37037161 original size:78 final size:78
Alignment explanation
Indices: 37037068--37037227 Score: 275
Period size: 78 Copynumber: 2.1 Consensus size: 78
37037058 TTTGCCAAAG
*
37037068 TATGATTATTAGACCAATTTGAATAATTTGAGTGTTAAATAAGTTATATTTAAAATGTTAGATCA
1 TATGATTATTAGACCAATTTGAATAATGTGAGTGTTAAATAAGTTATATTTAAAATGTTAGATCA
37037133 AGAAGAATGAGGT
66 AGAAGAATGAGGT
* * * *
37037146 TATGATTTTTGGACCAATTTGAATAATGTGAGTGTTAAATAAGTTATATTTGACATGTTAGATCA
1 TATGATTATTAGACCAATTTGAATAATGTGAGTGTTAAATAAGTTATATTTAAAATGTTAGATCA
37037211 AGAAGAATGAGGT
66 AGAAGAATGAGGT
37037224 TATG
1 TATG
37037228 GACTAAATTG
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
78 77 1.00
ACGTcount: A:0.38, C:0.04, G:0.20, T:0.38
Consensus pattern (78 bp):
TATGATTATTAGACCAATTTGAATAATGTGAGTGTTAAATAAGTTATATTTAAAATGTTAGATCA
AGAAGAATGAGGT
Found at i:37042445 original size:27 final size:27
Alignment explanation
Indices: 37042407--37042460 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
37042397 ATAAAAAAAA
37042407 TACCAAGCTTAAATTTGCATATTCACT
1 TACCAAGCTTAAATTTGCATATTCACT
37042434 TACCAAGCTTAAATTTGCATATTCACT
1 TACCAAGCTTAAATTTGCATATTCACT
37042461 AACCTTTTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.37
Consensus pattern (27 bp):
TACCAAGCTTAAATTTGCATATTCACT
Found at i:37043341 original size:50 final size:51
Alignment explanation
Indices: 37043287--37043388 Score: 152
Period size: 50 Copynumber: 2.0 Consensus size: 51
37043277 TTGCAGTAGT
* * *
37043287 AACATTATCCAATCCATTTGATGTTG-AAAAACACTAGCATATTCATCAGC
1 AACATTATACAATCCATCTGATGTTGTAAAAACACCAGCATATTCATCAGC
* *
37043337 AACATTATACACTCCATCTGATGTTGTAAAATCACCAGCATATTCATCAGC
1 AACATTATACAATCCATCTGATGTTGTAAAAACACCAGCATATTCATCAGC
37043388 A
1 A
37043389 GTAACTTCAC
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
50 23 0.50
51 23 0.50
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (51 bp):
AACATTATACAATCCATCTGATGTTGTAAAAACACCAGCATATTCATCAGC
Found at i:37044313 original size:41 final size:40
Alignment explanation
Indices: 37044212--37044447 Score: 249
Period size: 41 Copynumber: 5.8 Consensus size: 40
37044202 TTAATTATTT
** * * *
37044212 CCTGAATTGTACATACTTGCCCCTATATATACTTTGGTAC
1 CCTGAATTACACATACGTGCCCCTATTTATACTTTAGTAC
* * * *
37044252 CCTGAATTGCACATACGTGCCCCTGTTTGTACTTTAATAC
1 CCTGAATTACACATACGTGCCCCTATTTATACTTTAGTAC
* * * *
37044292 CCTTGAATTGCACATATGTGCCCCTATTTGTACTTTGGTAC
1 CC-TGAATTACACATACGTGCCCCTATTTATACTTTAGTAC
*
37044333 CCTGAATTACACATACGTGCCCCTAATTATACTTTAGTAC
1 CCTGAATTACACATACGTGCCCCTATTTATACTTTAGTAC
** * *
37044373 CCTTGAATTACACATACGTGCCTATTTTTATACTTCAGTACC
1 CC-TGAATTACACATACGTGCCCCTATTTATACTTTAGTA-C
* *
37044415 CCTGTAA-TACACATATGTGCCCCTGTTTATACT
1 CCTG-AATTACACATACGTGCCCCTATTTATACT
37044448 CCGGTAACTT
Statistics
Matches: 167, Mismatches: 25, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
40 70 0.42
41 92 0.55
42 5 0.03
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.36
Consensus pattern (40 bp):
CCTGAATTACACATACGTGCCCCTATTTATACTTTAGTAC
Found at i:37044349 original size:81 final size:81
Alignment explanation
Indices: 37044214--37044447 Score: 283
Period size: 81 Copynumber: 2.9 Consensus size: 81
37044204 AATTATTTCC
* * *
37044214 TGAATTGTACATACT-TGCCCCTATATATACTTTGGTACCCTGAATTGCACATACGTGCCCCTGT
1 TGAATTGCACATA-TGTGCCCCTATTTATACTTTGGTACCCTGAATTACACATACGTGCCCCTGT
*
37044278 TTGTACTTTAATACCCT
65 TTATACTTTAATACCCT
* **
37044295 TGAATTGCACATATGTGCCCCTATTTGTACTTTGGTACCCTGAATTACACATACGTGCCCCTAAT
1 TGAATTGCACATATGTGCCCCTATTTATACTTTGGTACCCTGAATTACACATACGTGCCCCTGTT
*
37044360 TATACTTTAGTACCCT
66 TATACTTTAATACCCT
* * ** * ** *
37044376 TGAATTACACATACGTGCCTATTTTTATACTTCAGTACCCCTGTAA-TACACATATGTGCCCCTG
1 TGAATTGCACATATGTGCCCCTATTTATACTTTGGTA-CCCTG-AATTACACATACGTGCCCCTG
37044440 TTTATACT
64 TTTATACT
37044448 CCGGTAACTT
Statistics
Matches: 131, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
80 1 0.01
81 100 0.76
82 28 0.21
83 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.37
Consensus pattern (81 bp):
TGAATTGCACATATGTGCCCCTATTTATACTTTGGTACCCTGAATTACACATACGTGCCCCTGTT
TATACTTTAATACCCT
Found at i:37044492 original size:23 final size:23
Alignment explanation
Indices: 37044456--37044502 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
37044446 CTCCGGTAAC
*
37044456 TTTGAGTCGTGTACAATAAGAGT
1 TTTGAGTCGAGTACAATAAGAGT
*
37044479 TTTGAGTTGAGTACAATAAGAGT
1 TTTGAGTCGAGTACAATAAGAGT
37044502 T
1 T
37044503 GTACTTAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.36
Consensus pattern (23 bp):
TTTGAGTCGAGTACAATAAGAGT
Found at i:37055337 original size:21 final size:24
Alignment explanation
Indices: 37055302--37055353 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 24
37055292 TAAGGTTAAC
37055302 CATTTAGGTATACTTTAGAAGT-AT
1 CATTT-GGTATACTTTAGAAGTGAT
*
37055326 -ATTTGGTA-ACTTTTGAAGTGAT
1 CATTTGGTATACTTTAGAAGTGAT
37055348 CATTTG
1 CATTTG
37055354 ATTGTGTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 10 0.40
22 6 0.24
23 9 0.36
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.44
Consensus pattern (24 bp):
CATTTGGTATACTTTAGAAGTGAT
Found at i:37057667 original size:93 final size:93
Alignment explanation
Indices: 37057508--37057679 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
37057498 ACCCATAAGT
* * *
37057508 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37057573 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * * *
37057601 GAACTCGTACTCAACTCAACGAGTTCGGACATTTGCATCGATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37057666 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
37057680 CAAATATCCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:37057675 original size:46 final size:45
Alignment explanation
Indices: 37057501--37057675 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 45
37057491 GTAACCCACC
* * * *
37057501 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * *
37057546 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 -CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* * *
37057596 C-TCA-CGAACTCGTACTCAACTCAACGAGTTCGGACATTTGCAT
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
37057639 CGATAAGTGAACTTGGACTCAACTCAACGAGTTCGGA
1 C-ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
37057676 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 7 0.07
44 1 0.01
45 2 0.02
46 60 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.23
Consensus pattern (45 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:37060102 original size:30 final size:30
Alignment explanation
Indices: 37060058--37060146 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
37060048 CAAAGATAAC
37060058 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
37060087 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
37060117 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
37060147 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:37060106 original size:15 final size:15
Alignment explanation
Indices: 37060058--37060137 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
37060048 CAAAGATAAC
*
37060058 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
37060072 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
37060087 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
37060102 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
37060117 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
37060132 AAGAAA
1 AAGAAA
37060138 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:37060146 original size:15 final size:15
Alignment explanation
Indices: 37060069--37060146 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
37060059 AGAAAACCGA
37060069 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
37060084 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
37060098 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
37060113 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
37060129 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
37060144 ATA
1 ATA
37060147 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:37063165 original size:30 final size:30
Alignment explanation
Indices: 37063121--37063177 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
37063111 TACAAGCATT
*
37063121 GGGGCAAAAGTGCAAATATGTGAAAGTTTA
1 GGGGCAAAAGTGCAAATATGTAAAAGTTTA
*
37063151 GGGGTCAAAA-TGCAAATTTGTAAAAGT
1 GGGG-CAAAAGTGCAAATATGTAAAAGT
37063178 ATGATTTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.40, C:0.07, G:0.28, T:0.25
Consensus pattern (30 bp):
GGGGCAAAAGTGCAAATATGTAAAAGTTTA
Found at i:37063720 original size:43 final size:43
Alignment explanation
Indices: 37063672--37063805 Score: 139
Period size: 43 Copynumber: 3.1 Consensus size: 43
37063662 TAAGCTGTCT
37063672 GAGTTCGTGATATATGTGAGAATCCGAACTTGTTGAGTGGTCC
1 GAGTTCGTGATATATGTGAGAATCCGAACTTGTTGAGTGGTCC
* *
37063715 AAGTTCGTGATATATGTGACATAT---AAGCTTGTTGAGTGGTCC
1 GAGTTCGTGATATATGTGAGA-ATCCGAA-CTTGTTGAGTGGTCC
* * ** * * **
37063757 GAGTTCATTATGGATGTGAGCATCCGAGCTCATTGAGTGGTCC
1 GAGTTCGTGATATATGTGAGAATCCGAACTTGTTGAGTGGTCC
37063800 GAGTTC
1 GAGTTC
37063806 ATAATGGATG
Statistics
Matches: 74, Mismatches: 12, Indels: 10
0.77 0.12 0.10
Matches are distributed among these distances:
41 4 0.05
42 29 0.39
43 38 0.51
44 3 0.04
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.33
Consensus pattern (43 bp):
GAGTTCGTGATATATGTGAGAATCCGAACTTGTTGAGTGGTCC
Found at i:37063762 original size:42 final size:41
Alignment explanation
Indices: 37063672--37063762 Score: 121
Period size: 42 Copynumber: 2.1 Consensus size: 41
37063662 TAAGCTGTCT
*
37063672 GAGTTCGTGATATATGTGAGAATCCGAACTTGTTGAGTGGTCC
1 GAGTTCGTGATATATGTGACAAT-C-AACTTGTTGAGTGGTCC
*
37063715 AAGTTCGTGATATATGTGACATAT-AAGCTTGTTGAGTGGTCC
1 GAGTTCGTGATATATGTGACA-ATCAA-CTTGTTGAGTGGTCC
37063757 GAGTTC
1 GAGTTC
37063763 ATTATGGATG
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
41 2 0.05
42 20 0.47
43 19 0.44
44 2 0.05
ACGTcount: A:0.24, C:0.13, G:0.29, T:0.34
Consensus pattern (41 bp):
GAGTTCGTGATATATGTGACAATCAACTTGTTGAGTGGTCC
Found at i:37063853 original size:51 final size:51
Alignment explanation
Indices: 37063777--37063876 Score: 146
Period size: 51 Copynumber: 2.0 Consensus size: 51
37063767 TGGATGTGAG
*
37063777 CATCCGAGCTCATTGAGTGGTCCGAGTTCATAATGGATGCGATACATGTAA
1 CATCCGAGCTCATTGAGAGGTCCGAGTTCATAATGGATGCGATACATGTAA
* * * * *
37063828 CATCCGAGCTCGTTGAGAGGTCCGAGTTTATTATGGATGTGTTACATGT
1 CATCCGAGCTCATTGAGAGGTCCGAGTTCATAATGGATGCGATACATGT
37063877 TATAAGGTAG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 43 1.00
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (51 bp):
CATCCGAGCTCATTGAGAGGTCCGAGTTCATAATGGATGCGATACATGTAA
Found at i:37064805 original size:35 final size:35
Alignment explanation
Indices: 37064759--37064828 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
37064749 TAAGTGACTA
37064759 TGACTCAAGAAAACATCATGACCAGAATATTAAGT
1 TGACTCAAGAAAACATCATGACCAGAATATTAAGT
37064794 TGACTCAAGAAAACATCATGACCAGAATATTAAGT
1 TGACTCAAGAAAACATCATGACCAGAATATTAAGT
37064829 AAAAGTATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.46, C:0.17, G:0.14, T:0.23
Consensus pattern (35 bp):
TGACTCAAGAAAACATCATGACCAGAATATTAAGT
Found at i:37066364 original size:24 final size:24
Alignment explanation
Indices: 37066332--37066378 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
37066322 ATAAAAGTGG
37066332 TTTATGGATTGAATTGAATGTTCA
1 TTTATGGATTGAATTGAATGTTCA
37066356 TTTATGGATTGAATTGAATGTTC
1 TTTATGGATTGAATTGAATGTTC
37066379 GAGATTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.28, C:0.04, G:0.21, T:0.47
Consensus pattern (24 bp):
TTTATGGATTGAATTGAATGTTCA
Found at i:37066812 original size:21 final size:20
Alignment explanation
Indices: 37066752--37066812 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
37066742 CCTCTGTTTG
37066752 TACTTCGGTACCCTTAAATTA
1 TACTTCGGTACCCTT-AATTA
* * * *
37066773 CACATAC-GTGCCCCTAATTA
1 TAC-TTCGGTACCCTTAATTA
37066793 TACTTCGGTACCCTTGAATT
1 TACTTCGGTACCCTT-AATT
37066813 GCACATACAT
Statistics
Matches: 29, Mismatches: 8, Indels: 6
0.67 0.19 0.14
Matches are distributed among these distances:
19 2 0.07
20 13 0.45
21 12 0.41
22 2 0.07
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.34
Consensus pattern (20 bp):
TACTTCGGTACCCTTAATTA
Found at i:37066827 original size:41 final size:41
Alignment explanation
Indices: 37066607--37066843 Score: 224
Period size: 41 Copynumber: 5.8 Consensus size: 41
37066597 ATTGCCTGAT
* * * *
37066607 TTGCACATATGTGCCTCTGTTTGTACTTTGGTGCCC-TGAA
1 TTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCTTGAA
* ** * * *
37066647 TTGCACATACATATCCTTGATTGTACTTTGGTACCCTTGAA
1 TTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCTTGAA
* * * * *
37066688 TTACACATACGTGCCCTTGTTTGTACTTCGATACCCCTAAA
1 TTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCTTGAA
** * *
37066729 TTGCACATTTGTGCCTCTGTTTGTACTTCGGTACCCTTAAA
1 TTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCTTGAA
* ** *
37066770 TTACACATACGTGCCCCTAATTATACTTCGGTACCCTTGAA
1 TTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCTTGAA
* * * *
37066811 TTGCACATACATGCCCCTCTTTATACTCCGGTA
1 TTGCACATACGTGCCCCTGTTTGTACTTCGGTA
37066844 ACTCTGAATC
Statistics
Matches: 159, Mismatches: 37, Indels: 1
0.81 0.19 0.01
Matches are distributed among these distances:
40 28 0.18
41 131 0.82
ACGTcount: A:0.22, C:0.27, G:0.15, T:0.37
Consensus pattern (41 bp):
TTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCTTGAA
Found at i:37067482 original size:117 final size:118
Alignment explanation
Indices: 37067339--37067550 Score: 356
Period size: 117 Copynumber: 1.8 Consensus size: 118
37067329 GGTAATAGAA
* * *
37067339 ATCAACAACATCGGGACCATTATCGCATCATAAATCAACAAAACAAACCCTACATTGTGGCA-TT
1 ATCAACAACATCAGGACCATTATCGCATCACAAATCAACAAAACAAACCCTACATTGTGGCACTA
37067403 AAAATTGCAATAATAAATCACAAATAACCATCTACAATTTTAACAATAGCTTT
66 AAAATTGCAATAATAAATCACAAATAACCATCTACAATTTTAACAATAGCTTT
* *
37067456 ATCAACAACATCAGGACCACTT-TCGCATCACAAATCGACAAAAGAAACCCTACATTGTGGCACT
1 ATCAACAACATCAGGACCA-TTATCGCATCACAAATCAACAAAACAAACCCTACATTGTGGCACT
37067520 AAAAATTGCAATAATAAATCACAAATAACCA
65 AAAAATTGCAATAATAAATCACAAATAACCA
37067551 ACAAATCGAA
Statistics
Matches: 88, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
117 55 0.62
118 33 0.38
ACGTcount: A:0.45, C:0.24, G:0.08, T:0.23
Consensus pattern (118 bp):
ATCAACAACATCAGGACCATTATCGCATCACAAATCAACAAAACAAACCCTACATTGTGGCACTA
AAAATTGCAATAATAAATCACAAATAACCATCTACAATTTTAACAATAGCTTT
Found at i:37067738 original size:16 final size:16
Alignment explanation
Indices: 37067717--37067763 Score: 69
Period size: 16 Copynumber: 2.9 Consensus size: 16
37067707 CAGATTGCTA
37067717 AAGATTTAGGGATTTT
1 AAGATTTAGGGATTTT
37067733 AAGATTT-GAGGATTTT
1 AAGATTTAG-GGATTTT
37067749 AAGATTTTAGGGATT
1 AAGA-TTTAGGGATT
37067764 CAACGAAGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
15 1 0.04
16 18 0.64
17 8 0.29
18 1 0.04
ACGTcount: A:0.32, C:0.00, G:0.26, T:0.43
Consensus pattern (16 bp):
AAGATTTAGGGATTTT
Found at i:37067807 original size:16 final size:16
Alignment explanation
Indices: 37067787--37067832 Score: 56
Period size: 17 Copynumber: 2.8 Consensus size: 16
37067777 AGATGTTATG
37067787 GATTTGGGGATTTCAC
1 GATTTGGGGATTTCAC
* *
37067803 TATTTGGGGAATTTGAC
1 GATTTGGGG-ATTTCAC
*
37067820 GAGTTGGGGATTT
1 GATTTGGGGATTT
37067833 TAAAATTTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 12 0.48
17 13 0.52
ACGTcount: A:0.20, C:0.07, G:0.35, T:0.39
Consensus pattern (16 bp):
GATTTGGGGATTTCAC
Found at i:37071151 original size:43 final size:43
Alignment explanation
Indices: 37070965--37071135 Score: 186
Period size: 43 Copynumber: 4.0 Consensus size: 43
37070955 CATAAAGCTC
* * * *
37070965 ATACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCAC-
1 ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
* * * * * *
37071006 ATATCGATGTCATTGTCCCAGACAAGGTATTACACGAAATCA-A
1 ATA-CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
*
37071049 ATAACGATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
1 AT-ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
* *
37071093 ATACAATGCCAATGTCTCAGACATGGTCTTACATGTAATCACA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
37071136 TGGTAATCCT
Statistics
Matches: 107, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
41 3 0.03
42 5 0.05
43 95 0.89
44 4 0.04
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.27
Consensus pattern (43 bp):
ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
Found at i:37071322 original size:35 final size:35
Alignment explanation
Indices: 37071253--37071322 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 35
37071243 ACATTCGTAG
**
37071253 CAATTCAATGATAATGAAACATATATAATTCAATT
1 CAATTCAATGATAATGAAACATATATAACACAATT
* *
37071288 CAATTCAATGATAAAT-AAGCATTTATAACACAATT
1 CAATTCAATGAT-AATGAAACATATATAACACAATT
37071323 TAAATACGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 27 0.90
36 3 0.10
ACGTcount: A:0.49, C:0.13, G:0.06, T:0.33
Consensus pattern (35 bp):
CAATTCAATGATAATGAAACATATATAACACAATT
Found at i:37077101 original size:24 final size:24
Alignment explanation
Indices: 37077057--37077115 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 24
37077047 AAAATAAAGA
* *
37077057 AAAAGAAGGAAAAGGAGAAGGAAG
1 AAAAGAAGGAAAAAGAAAAGGAAG
*
37077081 AAAAGAA-GAAAACAGAAAAGGAGG
1 AAAAGAAGGAAAA-AGAAAAGGAAG
37077105 AAATA-AAGGAA
1 AAA-AGAAGGAA
37077116 GAAACAACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
23 5 0.17
24 20 0.69
25 4 0.14
ACGTcount: A:0.66, C:0.02, G:0.31, T:0.02
Consensus pattern (24 bp):
AAAAGAAGGAAAAAGAAAAGGAAG
Found at i:37088043 original size:48 final size:48
Alignment explanation
Indices: 37087975--37088345 Score: 584
Period size: 48 Copynumber: 7.8 Consensus size: 48
37087965 CAAGATAAAT
* * *
37087975 ATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
*
37088023 ATATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
* * * * *
37088071 ATATGTATATGTGGTAAAGCCGAATGACGAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
* *
37088119 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
37088167 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
37088215 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
* * * *
37088261 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
*
37088309 ATATGTATATGTGATAAAGCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
37088346 TGTTGTAACA
Statistics
Matches: 300, Mismatches: 21, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
46 43 0.14
47 4 0.01
48 253 0.84
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
Found at i:37090450 original size:40 final size:40
Alignment explanation
Indices: 37090400--37090717 Score: 483
Period size: 40 Copynumber: 8.0 Consensus size: 40
37090390 AGTTGTATAG
*
37090400 CCGGGCTAAGTCCCGAAGAGCATTCGAGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
37090440 CCGGGTTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
37090480 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAA
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
37090520 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
*
37090560 CCGGGTTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* *
37090600 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* * ** * * *
37090640 CTGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
* * * *
37090680 CCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
37090718 GTAGTCGGGC
Statistics
Matches: 253, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 253 1.00
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAT
Found at i:37090927 original size:25 final size:25
Alignment explanation
Indices: 37090877--37090927 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
37090867 TGTGTAACAA
* *
37090877 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
37090902 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
37090927 C
1 C
37090928 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:37093834 original size:48 final size:48
Alignment explanation
Indices: 37093766--37094090 Score: 524
Period size: 48 Copynumber: 6.8 Consensus size: 48
37093756 TACAAGATAA
* * * *
37093766 ATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATTTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
*
37093814 ATATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
* * * * *
37093862 ATATGTATATGTGGTAAAGCCGAATGACGAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
37093910 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
37093958 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
* * * *
37094006 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
37094054 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
37094091 TGTTGTAACA
Statistics
Matches: 256, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 256 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
Found at i:37093945 original size:144 final size:144
Alignment explanation
Indices: 37093766--37094090 Score: 596
Period size: 144 Copynumber: 2.3 Consensus size: 144
37093756 TACAAGATAA
* * * * *
37093766 ATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATTTGTGATATGTGTATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAA
37093831 AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGACGAATGT
66 AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGACGAATGT
37093896 GAAATATGTATGAG
131 GAAATATGTATGAG
37093910 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAA
*
37093975 AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGT
66 AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGACGAATGT
37094040 GAAATATGTATGAG
131 GAAATATGTATGAG
37094054 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
37094091 TGTTGTAACA
Statistics
Matches: 175, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
144 175 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (144 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGACGAATGT
GAAATATGTATGAG
Found at i:37094184 original size:37 final size:37
Alignment explanation
Indices: 37094134--37094236 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
37094124 GGAAATGTAT
*
37094134 TCCGGGCAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
37094171 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
37094208 TCTGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
37094237 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.22, C:0.20, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:37095975 original size:22 final size:22
Alignment explanation
Indices: 37095945--37095991 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
37095935 ATCAACATCA
37095945 ATAATATCTTTAATATGATTC-GG
1 ATAATATCTTTAA-AT-ATTCAGG
37095968 ATAA-ATCTTTAAATATTCAGG
1 ATAATATCTTTAAATATTCAGG
37095989 ATA
1 ATA
37095992 TGTTACCAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.17
21 7 0.30
22 8 0.35
23 4 0.17
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.40
Consensus pattern (22 bp):
ATAATATCTTTAAATATTCAGG
Found at i:37097329 original size:14 final size:14
Alignment explanation
Indices: 37097310--37097358 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
37097300 AATTAAATAA
37097310 AAATTAAGAAAGAC
1 AAATTAAGAAAGAC
* *
37097324 AAATTAACAATCGA-
1 AAATTAAGAA-AGAC
*
37097338 GAATTAAGAAAGAC
1 AAATTAAGAAAGAC
37097352 AAATTAA
1 AAATTAA
37097359 CAATCGAGAT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
13 2 0.07
14 23 0.85
15 2 0.07
ACGTcount: A:0.61, C:0.08, G:0.12, T:0.18
Consensus pattern (14 bp):
AAATTAAGAAAGAC
Found at i:37097346 original size:28 final size:28
Alignment explanation
Indices: 37097311--37097371 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
37097301 ATTAAATAAA
37097311 AATTAAGAAAGACAAATTAACAATCGAG
1 AATTAAGAAAGACAAATTAACAATCGAG
37097339 AATTAAGAAAGACAAATTAACAATCGAG
1 AATTAAGAAAGACAAATTAACAATCGAG
37097367 -ATTAA
1 AATTAA
37097372 CTCAATTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 5 0.15
28 28 0.85
ACGTcount: A:0.57, C:0.10, G:0.13, T:0.20
Consensus pattern (28 bp):
AATTAAGAAAGACAAATTAACAATCGAG
Found at i:37108419 original size:31 final size:31
Alignment explanation
Indices: 37108381--37108459 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
37108371 TTTAACGGTT
37108381 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
37108412 ACTGGGCCAAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
37108443 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
37108460 ACTGTAAACG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:37108530 original size:42 final size:42
Alignment explanation
Indices: 37108483--37108574 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
37108473 TGACCCTTAG
* ** *
37108483 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
37108525 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
37108567 GCCCATTT
1 GCCCATTT
37108575 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:37108790 original size:26 final size:26
Alignment explanation
Indices: 37108719--37108867 Score: 221
Period size: 26 Copynumber: 5.8 Consensus size: 26
37108709 CCTCTTTAAT
37108719 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
37108744 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
37108769 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
37108795 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
37108821 AGCTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
37108847 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
37108868 GCACTTCCTC
Statistics
Matches: 110, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 32 0.29
26 78 0.71
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:37108832 original size:52 final size:51
Alignment explanation
Indices: 37108716--37108867 Score: 254
Period size: 52 Copynumber: 3.0 Consensus size: 51
37108706 TAGCCTCTTT
37108716 AATAACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTC
1 AATAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTC
*
37108765 AATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTC
1 AAT-AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTC
*
37108817 AATAAGCTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGCCCTTTT
1 AATAA-CTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
37108868 GCACTTCCTC
Statistics
Matches: 96, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
49 3 0.03
50 9 0.09
51 27 0.28
52 57 0.59
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (51 bp):
AATAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTC
Found at i:37109761 original size:27 final size:27
Alignment explanation
Indices: 37109670--37109752 Score: 123
Period size: 27 Copynumber: 3.1 Consensus size: 27
37109660 GGGCATATTC
* * *
37109670 GTCATTTTACCATACAGAGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
37109697 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
37109724 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
37109751 GT
1 GT
37109753 TTTTTTACCT
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:37109845 original size:27 final size:27
Alignment explanation
Indices: 37109793--37110151 Score: 235
Period size: 27 Copynumber: 13.3 Consensus size: 27
37109783 TTCATCCTAC
* * * *
37109793 AAGGGTGTTTTGGTAAATCTACAAACT
1 AAGGGTATTTTGGTAATTTTATAAACT
** *
37109820 AAGGGTATTTCAGTAATTTTGTAAACT
1 AAGGGTATTTTGGTAATTTTATAAACT
** *** * *
37109847 AATAGTATTTCCATAATTTTTAGAAAGT
1 AAGGGTATTTTGGTAA-TTTTATAAACT
* *
37109875 CAAGGGTATTTCT-GTAACTTTGTAAA-T
1 -AAGGGTATTT-TGGTAATTTTATAAACT
* * *
37109902 CAGGGGTATTTTGGTAATTTTACAAATT
1 -AAGGGTATTTTGGTAATTTTATAAACT
* *
37109930 GAA-GGTATTTCGGTAATTTTACAAAC-
1 -AAGGGTATTTTGGTAATTTTATAAACT
* *
37109956 CAGTGGTATTTTGGTAATTTTACAAACT
1 AAG-GGTATTTTGGTAATTTTATAAACT
* * *
37109984 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTGGTAATTTTATAAACT
* * *
37110011 GAGGGTATTTCGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTATAAACT
* * * *
37110038 AGGGGTATTTTAGCAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTATAAACT
* *
37110065 -AGGGTATTTTGGTAATTTTACTGATC-
1 AAGGGTATTTTGGTAATTTTA-TAAACT
* * *
37110091 GAGGGTATTTTGGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTATAAACT
* * *
37110118 AAGGGTATTTTAGTAATTTTGTAAATT
1 AAGGGTATTTTGGTAATTTTATAAACT
*
37110145 GAGGGTA
1 AAGGGTA
37110152 AAACAGTAAT
Statistics
Matches: 264, Mismatches: 57, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
25 1 0.00
26 21 0.08
27 214 0.81
28 17 0.06
29 11 0.04
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTATAAACT
Found at i:37109964 original size:54 final size:53
Alignment explanation
Indices: 37109905--37110151 Score: 273
Period size: 54 Copynumber: 4.6 Consensus size: 53
37109895 TGTAAATCAG
* *
37109905 GGGTATTTTGGTAATTTTACAAATTGAAGGTATTTCGGTAATTTTACAAACCA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACCA
* **
37109958 GTGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAATTGA
1 G-GGTATTTTGGTAATTTTACAAATTGA-GGGTATTTTGGTAATTTTACAAA-CCA
* * * * *
37110013 GGGTATTTCGGTAATTTTACAAACT-AGGGGTATTTTAGCAATTTTACAAACTA
1 GGGTATTTTGGTAATTTTACAAATTGA-GGGTATTTTGGTAATTTTACAAACCA
** * **
37110066 GGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACC-A
* **
37110120 GGGTATTTTAGTAATTTTGTAAATTGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTA
37110152 AAACAGTAAT
Statistics
Matches: 163, Mismatches: 26, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
53 43 0.26
54 118 0.72
55 2 0.01
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACCA
Found at i:37109998 original size:81 final size:80
Alignment explanation
Indices: 37109903--37110137 Score: 346
Period size: 81 Copynumber: 2.9 Consensus size: 80
37109893 TTTGTAAATC
*
37109903 AGGGGTATTTTGGTAATTTTACAAATTGAAGGTATTTCGGTAATTTTACAAACCAGTGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAG-GGTATTTT
*
37109968 GGTAATTTTACAAACT
65 AGTAATTTTACAAACT
*
37109984 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACTAGGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCA-GGGTATTTT
*
37110049 AGCAATTTTACAAACT
65 AGTAATTTTACAAACT
** * * **
37110065 A-GGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACC-AGGGTATTTT
37110129 AGTAATTTT
65 AGTAATTTT
37110138 GTAAATTGAG
Statistics
Matches: 140, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
80 62 0.44
81 77 0.55
82 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (80 bp):
AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAGGGTATTTTA
GTAATTTTACAAACT
Found at i:37110269 original size:27 final size:27
Alignment explanation
Indices: 37109877--37110298 Score: 226
Period size: 27 Copynumber: 15.7 Consensus size: 27
37109867 TAGAAAGTCA
* * *
37109877 AGGGTATTTCTGTAACTTTGTAAATC-
1 AGGGTATTTCGGTAATTTTATAAATCG
* * *
37109903 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTCGGTAATTTTATAAATCG
* * *
37109931 AAGGTATTTCGGTAATTTTACAAA-CC
1 AGGGTATTTCGGTAATTTTATAAATCG
* * *
37109957 AGTGGTATTTTGGTAATTTTACAAA-CT
1 AG-GGTATTTCGGTAATTTTATAAATCG
* * *
37109984 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTCGGTAATTTTATAAATCG
* *
37110012 AGGGTATTTCGGTAATTTTACAAA-CT
1 AGGGTATTTCGGTAATTTTATAAATCG
** * * *
37110038 AGGGGTATTTTAGCAATTTTACAAA-CT
1 A-GGGTATTTCGGTAATTTTATAAATCG
* *
37110065 AGGGTATTTTGGTAATTTTACT-GATCG
1 AGGGTATTTCGGTAATTTTA-TAAATCG
* * * *
37110092 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTCGGTAATTTTATAAATCG
** * *
37110119 AGGGTATTTTAGTAATTTTGTAAATTG
1 AGGGTATTTCGGTAATTTTATAAATCG
*** * * * *
37110146 AGGGTAAAACAGTAATTCTGTAAATCA
1 AGGGTATTTCGGTAATTTTATAAATCG
*** * *
37110173 AGGGTAAAACGGTAATTCTATTAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
*** * *
37110200 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
*** *
37110227 AGGGTAAAACGATAATTTTATAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
* * * *
37110254 AGGGTACTTCGGTAATTTTACAATTTG
1 AGGGTATTTCGGTAATTTTATAAATCG
* *
37110281 AGGGCATTTCAGTAATTT
1 AGGGTATTTCGGTAATTT
37110299 GGTAAACTAA
Statistics
Matches: 327, Mismatches: 60, Indels: 17
0.81 0.15 0.04
Matches are distributed among these distances:
26 22 0.07
27 302 0.92
28 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTATAAATCG
Found at i:37119177 original size:40 final size:40
Alignment explanation
Indices: 37119126--37119330 Score: 304
Period size: 40 Copynumber: 5.1 Consensus size: 40
37119116 GGATGATAAT
* *
37119126 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
37119165 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
37119206 TCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
37119246 TCCGGGCTAAGTCCCGAAGACATTTGTGCAAACTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* **
37119286 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTCGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
37119326 TCCGG
1 TCCGG
37119331 TTAAAGCCCG
Statistics
Matches: 149, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 148 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:37125477 original size:3 final size:3
Alignment explanation
Indices: 37125469--37125505 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
37125459 GCCAAATACT
37125469 TTA TTA TTA TTA -TA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
37125506 CTTTTTCTAC
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:37134325 original size:33 final size:33
Alignment explanation
Indices: 37134280--37134401 Score: 208
Period size: 33 Copynumber: 3.7 Consensus size: 33
37134270 GCGCCGTCAT
*
37134280 AAGTTACAGTATCTTTGTTTCACACACCATCAC
1 AAGTTACGGTATCTTTGTTTCACACACCATCAC
*
37134313 AAGTTATGGTATCTTTGTTTCACACACCATCAC
1 AAGTTACGGTATCTTTGTTTCACACACCATCAC
*
37134346 AAGTTACGGTATCTTTGTGTCACACACCATCAC
1 AAGTTACGGTATCTTTGTTTCACACACCATCAC
*
37134379 AAGTTACGGTATCTTCGTTTCAC
1 AAGTTACGGTATCTTTGTTTCAC
37134402 GCGCCACTCG
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 83 1.00
ACGTcount: A:0.27, C:0.25, G:0.13, T:0.34
Consensus pattern (33 bp):
AAGTTACGGTATCTTTGTTTCACACACCATCAC
Found at i:37147907 original size:36 final size:35
Alignment explanation
Indices: 37147852--37147928 Score: 136
Period size: 36 Copynumber: 2.2 Consensus size: 35
37147842 AGGAGAAGAG
37147852 AAAATTACCAATAGCCCTTGTACTTAGTCATTTCC
1 AAAATTACCAATAGCCCTTGTACTTAGTCATTTCC
37147887 AAAATTACCAAATAGCCCTTGTACTTAGTCATTTCC
1 AAAATTACC-AATAGCCCTTGTACTTAGTCATTTCC
*
37147923 ACAATT
1 AAAATT
37147929 TAGCTAGATA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
35 9 0.22
36 31 0.77
ACGTcount: A:0.34, C:0.25, G:0.08, T:0.34
Consensus pattern (35 bp):
AAAATTACCAATAGCCCTTGTACTTAGTCATTTCC
Found at i:37149142 original size:48 final size:48
Alignment explanation
Indices: 37149064--37149304 Score: 192
Period size: 48 Copynumber: 5.1 Consensus size: 48
37149054 GAAATCACAT
* * * *
37149064 TCACATAGTCGGATGCCAATGACATATCCCAGATATGGTCTTACGTGGGA
1 TCACATA-TC-GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
* * *
37149114 TCACATATCGATGCTAATGCCATGTCCCAGACATGTTCTTACATGGAA
1 TCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
* * * * * *
37149162 TCATGCATATCAAAGCCGAT---A-G-CCCA-ATTATGGTCTTACACGATG-
1 TCA--CATATCGATGCCAATGCCATGTCCCAGA-CATGGTCTTACATG-GGA
** * * *
37149207 TCTTATATTGATGCCAATGCTATGTCCTAGACATGGTCTTACATGGG-
1 TCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
* *
37149254 TCACATTTCGATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGA
1 TCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
37149302 TCA
1 TCA
37149305 TGCATATCCC
Statistics
Matches: 149, Mismatches: 31, Indels: 24
0.73 0.15 0.12
Matches are distributed among these distances:
43 10 0.07
44 1 0.01
45 17 0.11
46 2 0.01
47 45 0.30
48 53 0.36
49 3 0.02
50 18 0.12
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (48 bp):
TCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
Found at i:37158276 original size:28 final size:28
Alignment explanation
Indices: 37158236--37158305 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
37158226 ATAGTAAGTC
*
37158236 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
37158264 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
37158292 CGCACACTTAGTGC
1 CGCACACTTAGTGC
37158306 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:37164343 original size:68 final size:64
Alignment explanation
Indices: 37164178--37164372 Score: 169
Period size: 68 Copynumber: 2.9 Consensus size: 64
37164168 CTAGCCAGTT
* * * * * *
37164178 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACGCATGCGACCTAGCTA-C
1 TATC-CGTAGCTCTCTTGTCTACATGATGTAC-ACAC--AGCACCACACATGCGACCTAGCTACC
37164242 ATA
62 ATA
* * * *
37164245 TATCCGTAGCTCTCTTGTCTACATGGTGTACACACAGTATCACCCATGCGACCTAGCTACGTCAT
1 TATCCGTAGCTCTCTTGTCTACATGATGTACACACAGCACCACACATGCGACCTAGCTAC--CAT
37164310 AA
64 -A
* * * *
37164312 TGTCTCGTAGCTCTCTTGTAC-ACATGATGTACACTCAGCACCATACATGTGACCTAGCTAC
1 TATC-CGTAGCTCTCTTGT-CTACATGATGTACACACAGCACCACACATGCGACCTAGCTAC
37164373 ATACCATCTG
Statistics
Matches: 108, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
63 20 0.19
65 3 0.03
66 29 0.27
67 8 0.07
68 47 0.44
69 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.30
Consensus pattern (64 bp):
TATCCGTAGCTCTCTTGTCTACATGATGTACACACAGCACCACACATGCGACCTAGCTACCATA
Found at i:37167621 original size:27 final size:26
Alignment explanation
Indices: 37167569--37167628 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
37167559 ACATATATAT
*
37167569 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
37167595 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
37167622 ATATCTG
1 ATATCTG
37167629 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:37173272 original size:47 final size:47
Alignment explanation
Indices: 37173221--37173707 Score: 650
Period size: 47 Copynumber: 10.1 Consensus size: 47
37173211 TTAGGATTTT
*
37173221 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
37173268 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
37173319 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
37173366 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
37173413 ATGTGATGAATGTGAACCCATATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
*
37173464 ATGTGATGAATGTGAACATGCGTTTGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** *
37173511 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCGTATGTGTGATAAGGCCGAATGGCCA
37173564 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
37173611 ATGTGATGAATGTGAACATGCGTTTGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* ** * * *
37173658 ATGTGATGAATATGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
37173705 ATG
1 ATG
37173708 CGAAACATGT
Statistics
Matches: 389, Mismatches: 37, Indels: 28
0.86 0.08 0.06
Matches are distributed among these distances:
47 256 0.66
48 1 0.00
49 4 0.01
51 86 0.22
52 1 0.00
53 41 0.11
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:37173332 original size:98 final size:94
Alignment explanation
Indices: 37173221--37173707 Score: 650
Period size: 98 Copynumber: 5.0 Consensus size: 94
37173211 TTAGGATTTT
*
37173221 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--
***
37173286 CGTATATATATGTGTGATAAGGCCGAATGGCCA
64 C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
37173319 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCACTGTGATGGATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
37173384 TGCGTATGTGTGATAAGGCCGAATGGCCA
66 TGCGTATGTGTGATAAGGCCGAATGGCCA
***
37173413 ATGTGATGAATGTGAACCCATATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
*
37173478 AACATGCGTTTGTGTGATAAGGCCGAATGGCCA
62 AACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** *
37173511 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATG
1 ATGTGATGAATGTGAA-C-----ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATG
37173576 TGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
60 TGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
37173611 ATGTGATGAATGTGAACATGCGTTTGTGTGATAAGGCTGAATGGCCAATGTGATGAATATGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
** * * *
37173676 TGAATATATGTGGTAAGGCCGAATGGCTA
66 TGCGTATGTGTGATAAGGCCGAATGGCCA
37173705 ATG
1 ATG
37173708 CGAAACATGT
Statistics
Matches: 356, Mismatches: 26, Indels: 18
0.89 0.06 0.05
Matches are distributed among these distances:
94 111 0.31
96 2 0.01
97 2 0.01
98 147 0.41
99 1 0.00
100 93 0.26
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.27
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:37173371 original size:145 final size:144
Alignment explanation
Indices: 37173221--37173707 Score: 719
Period size: 145 Copynumber: 3.3 Consensus size: 144
37173211 TTAGGATTTT
* *
37173221 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
37173286 CGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
66 C-TATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTTTGTGTGAT
37173351 AAGGCCGAATGGCCA
130 AAGGCCGAATGGCCA
* * *
37173366 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
37173431 CATATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTTTGTGTGAT
66 C-TATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTTTGTGTGAT
37173496 AAGGCCGAATGGCCA
130 AAGGCCGAATGGCCA
** *
37173511 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATG
1 ATGTGATGAATGTGAA-C-----ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATG
***
37173576 TGAA--C-ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTTTGT
60 TGAACCCTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTTTGT
*
37173638 GTGATAAGGCTGAATGGCCA
125 GTGATAAGGCCGAATGGCCA
* * * * *
37173658 ATGTGATGAATATGAACATGAATATATGTGGTAAGGCCGAATGGCTAATG
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATG
37173708 CGAAACATGT
Statistics
Matches: 316, Mismatches: 20, Indels: 16
0.90 0.06 0.05
Matches are distributed among these distances:
141 27 0.09
145 156 0.49
146 2 0.01
147 88 0.28
149 1 0.00
151 42 0.13
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.27
Consensus pattern (144 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
CTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTTTGTGTGATA
AGGCCGAATGGCCA
Found at i:37173747 original size:46 final size:46
Alignment explanation
Indices: 37173681--37173771 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
37173671 GAACATGAAT
* * *
37173681 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACATGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
37173727 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
37173772 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.10, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:37173784 original size:245 final size:244
Alignment explanation
Indices: 37173230--37173756 Score: 770
Period size: 245 Copynumber: 2.2 Consensus size: 244
37173220 TATGTGATGG
* * *
37173230 ATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCG--TATAT
1 ATGTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACCTGTATATAT
*
37173293 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCG
66 ATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCG
* *
37173358 AATGGCCACTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAA
131 AATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAA
* * *
37173423 TGTGAACCCATATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGA
196 TATGAA-CCATATATATATGTGTGATAAGGCCGAATGGCCAATGCGATAA
* * *
37173473 ATGTGAACATGCGTTTGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATAT
1 ATGTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACCTGTATATAT
37173538 ATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCG
66 ATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCG
* *
37173603 AATGGCCAATGTGATGAATGTGAACATGCGTTTGTGTGATAAGGCTGAATGGCCAATGTGATGAA
131 AATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAA
*
37173668 TATGAA-CATGA-ATATATGTG-G-TAAGGCCGAATGGCTAATGCGA-AA
196 TATGAACCAT-ATATATATGTGTGATAAGGCCGAATGGCCAATGCGATAA
* *
37173713 CATGT-ATGAGATG-GATATGTG-G-TAAAGCCAAATGGCTAATGTGA
1 -ATGTGA--ACATGCG-TATGTGTGATAAAGCCAAATGGCCAATGTGA
37173757 GATATGTACG
Statistics
Matches: 261, Mismatches: 16, Indels: 17
0.89 0.05 0.06
Matches are distributed among these distances:
240 21 0.08
241 26 0.10
242 10 0.04
243 68 0.26
244 1 0.00
245 135 0.52
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.27
Consensus pattern (244 bp):
ATGTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACCTGTATATAT
ATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCG
AATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAA
TATGAACCATATATATATGTGTGATAAGGCCGAATGGCCAATGCGATAA
Found at i:37173966 original size:37 final size:37
Alignment explanation
Indices: 37173916--37174139 Score: 376
Period size: 37 Copynumber: 6.1 Consensus size: 37
37173906 GGAAATATAT
*
37173916 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
37173953 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
37173990 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
37174027 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
37174064 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * * *
37174101 TCCGGGTAAGACCCGATAACTTCATGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
37174138 TC
1 TC
37174140 TGAGCTAAAG
Statistics
Matches: 178, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 178 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:37175459 original size:40 final size:40
Alignment explanation
Indices: 37175404--37175851 Score: 689
Period size: 40 Copynumber: 11.2 Consensus size: 40
37175394 GAGAATTGAG
*
37175404 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* *
37175444 AGTGATATATCCGGGCTAAGTCCCGAAGAGCACTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
37175484 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
37175524 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
37175564 AGTGATATATTCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
37175604 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
37175644 AGTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
37175684 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* ** *
37175724 AGTGATGTATCCGGGCTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * ** * *
37175764 CGTGATATATCCGTGCTAAACCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * * * *
37175804 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
37175844 GGTGATAT
1 AGTGATAT
37175852 GTATTCGGGC
Statistics
Matches: 377, Mismatches: 31, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 377 1.00
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:37175604 original size:23 final size:23
Alignment explanation
Indices: 37175538--37175644 Score: 67
Period size: 23 Copynumber: 5.2 Consensus size: 23
37175528 ATATATCCGG
37175538 GCTAAGTCCCGAGGAGCATTCGT
1 GCTAAGTCCCGAGGAGCATTCGT
* * *
37175561 GCT-AGT---GA-TA-TATTCGG
1 GCTAAGTCCCGAGGAGCATTCGT
37175578 GCTAAGTCCCGAGGAGCATTCGT
1 GCTAAGTCCCGAGGAGCATTCGT
* * * *
37175601 GCT-AGT---GA-TA-TATCCGG
1 GCTAAGTCCCGAGGAGCATTCGT
37175618 GCTAAGTCCCGAGGAGCATTCGT
1 GCTAAGTCCCGAGGAGCATTCGT
37175641 GCTA
1 GCTA
37175645 GTGATATATC
Statistics
Matches: 58, Mismatches: 14, Indels: 24
0.60 0.15 0.25
Matches are distributed among these distances:
17 15 0.26
18 8 0.14
19 4 0.07
21 4 0.07
22 8 0.14
23 19 0.33
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.25
Consensus pattern (23 bp):
GCTAAGTCCCGAGGAGCATTCGT
Done.