Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 116 of 333
Found at i:37531201 original size:118 final size:119
Alignment explanation
Indices: 37531019--37531245 Score: 318
Period size: 118 Copynumber: 1.9 Consensus size: 119
37531009 GGATATAGCT
* * * *
37531019 ACTCGCTCGAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACCATGCCTTCGGGACTTA
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAATAACTCGCACAATGCCTTCGGGACTTA
* *
37531084 GCCCGGATA-TAGT-AGCTCGCACAAATGCCTTCGGGACTTAGCCCAGATGTAATA
66 GCCCGGA-ACTAGTCA-CTAGCACAAATGCCTCCGGGACTTAGCCCAGATGTAATA
* *
37531138 ACTCGCACAAATGCCTTC-GGACTTAG-CCGGATGTAATAACTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAATAACTCGCAC-AATGCCTTCGGGACTT
*
37531201 AGCCCGGAACTAGTCACTAGCGCAAATGCCTCCGGGACTTAGCCC
65 AGCCCGGAACTAGTCACTAGCACAAATGCCTCCGGGACTTAGCCC
37531246 GGTTATCATC
Statistics
Matches: 96, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
117 19 0.20
118 60 0.62
119 17 0.18
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.22
Consensus pattern (119 bp):
ACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAATAACTCGCACAATGCCTTCGGGACTTA
GCCCGGAACTAGTCACTAGCACAAATGCCTCCGGGACTTAGCCCAGATGTAATA
Found at i:37534362 original size:83 final size:83
Alignment explanation
Indices: 37534223--37534389 Score: 325
Period size: 83 Copynumber: 2.0 Consensus size: 83
37534213 TAAATGTGAG
*
37534223 GTCCTTAAGATGTAAATGGGCTATTGGAATTATGCATGGACAAAATTGGACATTACTTAGTGGTT
1 GTCCTTAAGATGTAAATGGGCCATTGGAATTATGCATGGACAAAATTGGACATTACTTAGTGGTT
37534288 TTTAAATGAAATGAAAAA
66 TTTAAATGAAATGAAAAA
37534306 GTCCTTAAGATGTAAATGGGCCATTGGAATTATGCATGGACAAAATTGGACATTACTTAGTGGTT
1 GTCCTTAAGATGTAAATGGGCCATTGGAATTATGCATGGACAAAATTGGACATTACTTAGTGGTT
37534371 TTTAAATGAAATGAAAAA
66 TTTAAATGAAATGAAAAA
37534389 G
1 G
37534390 GTTATATTAG
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 83 1.00
ACGTcount: A:0.37, C:0.09, G:0.22, T:0.32
Consensus pattern (83 bp):
GTCCTTAAGATGTAAATGGGCCATTGGAATTATGCATGGACAAAATTGGACATTACTTAGTGGTT
TTTAAATGAAATGAAAAA
Found at i:37537850 original size:23 final size:22
Alignment explanation
Indices: 37537799--37537850 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
37537789 CCTCGTCTTT
*
37537799 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
37537821 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
37537844 TTCTTTT
1 TTCTTTT
37537851 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:37552382 original size:60 final size:60
Alignment explanation
Indices: 37552309--37552430 Score: 217
Period size: 60 Copynumber: 2.0 Consensus size: 60
37552299 GTATCAAGTT
*
37552309 GGTAATAAGGTATTCTTGAAAGTATCTCCATGGAAGAAGGTTTTAAGATTCTGTAGAGAA
1 GGTAATAAGGTATTCTTGAAAGTATCTCCATGGAAGAAGGTTTTAAGATTCGGTAGAGAA
* *
37552369 GGTAATAAGGTATTCTTGAAAGTATCTCTATGGAAGAAGGTTTTGAGATTCGGTAGAGAA
1 GGTAATAAGGTATTCTTGAAAGTATCTCCATGGAAGAAGGTTTTAAGATTCGGTAGAGAA
37552429 GG
1 GG
37552431 CAAGTTGAGT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (60 bp):
GGTAATAAGGTATTCTTGAAAGTATCTCCATGGAAGAAGGTTTTAAGATTCGGTAGAGAA
Found at i:37564528 original size:19 final size:19
Alignment explanation
Indices: 37564506--37564575 Score: 70
Period size: 19 Copynumber: 3.7 Consensus size: 19
37564496 TGTTACACAG
37564506 ATGAATTACTGTTATACGA
1 ATGAATTACTGTTATACGA
* * *
37564525 ATGAAGTACTGTTTATAAGG
1 ATGAATTACTG-TTATACGA
* *
37564545 ATGAGTTGCTGTTAT-CGA
1 ATGAATTACTGTTATACGA
*
37564563 ATGAATTATTGTT
1 ATGAATTACTGTT
37564576 TATATGATTA
Statistics
Matches: 39, Mismatches: 11, Indels: 3
0.74 0.21 0.06
Matches are distributed among these distances:
18 11 0.28
19 14 0.36
20 14 0.36
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.40
Consensus pattern (19 bp):
ATGAATTACTGTTATACGA
Found at i:37564576 original size:38 final size:39
Alignment explanation
Indices: 37564505--37564579 Score: 107
Period size: 38 Copynumber: 1.9 Consensus size: 39
37564495 GTGTTACACA
37564505 GATGAATTACTGTTATACGAATGAAGTACTGTTTATAAG
1 GATGAATTACTGTTATACGAATGAAGTACTGTTTATAAG
* * * *
37564544 GATGAGTTGCTGTTAT-CGAATGAATTATTGTTTATA
1 GATGAATTACTGTTATACGAATGAAGTACTGTTTATA
37564580 TGATTAAGAG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
38 18 0.56
39 14 0.44
ACGTcount: A:0.32, C:0.07, G:0.21, T:0.40
Consensus pattern (39 bp):
GATGAATTACTGTTATACGAATGAAGTACTGTTTATAAG
Found at i:37572597 original size:19 final size:19
Alignment explanation
Indices: 37572569--37572608 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
37572559 TTTCAAGAAT
*
37572569 ACTCTGTCCTCGAAGTGGA
1 ACTCTATCCTCGAAGTGGA
* *
37572588 ACTCTATCCTTGAATTGGA
1 ACTCTATCCTCGAAGTGGA
37572607 AC
1 AC
37572609 AAAATCAGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (19 bp):
ACTCTATCCTCGAAGTGGA
Found at i:37574661 original size:43 final size:42
Alignment explanation
Indices: 37574549--37574699 Score: 146
Period size: 43 Copynumber: 3.5 Consensus size: 42
37574539 CAATGCCAAC
* *
37574549 GTCCCAGACGTGGTCTTACATGT-AATCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACACGTAAATCAAATAT-GATGCCA-T
* * *
37574592 ATCCCAGACAGGGTCTTGCACG-AAATCAAATATGATGCCGAT
1 GTCCCAGACATGGTCTTACACGTAAATCAAATATGATGCC-AT
* *
37574634 GTCCCAAACATGGTCTTACACGTAAATCATAAGT-TGATGCCAAC
1 GTCCCAGACATGGTCTTACACGTAAATCA-AA-TATGATGCC-AT
* *
37574678 GTCTCAGACGTGGTCTTACACG
1 GTCCCAGACATGGTCTTACACG
37574700 ATAACACATA
Statistics
Matches: 89, Mismatches: 14, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
42 25 0.28
43 34 0.38
44 29 0.33
45 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGTAAATCAAATATGATGCCAT
Found at i:37576833 original size:93 final size:93
Alignment explanation
Indices: 37576705--37576875 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
37576695 GCCCATAAGT
* * *
37576705 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
37576770 TGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
37576798 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
37576863 CGAGTTCGGATGC
66 CGAGCTCGGATGC
37576876 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:37576872 original size:46 final size:46
Alignment explanation
Indices: 37576697--37576872 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
37576687 TGTAACCCGC
* * *
37576697 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
37576743 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
37576789 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
37576836 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
37576873 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.64
47 31 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:37578785 original size:30 final size:30
Alignment explanation
Indices: 37578741--37578829 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
37578731 CAAAGATAAC
37578741 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
37578770 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
37578800 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
37578830 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:37578789 original size:15 final size:15
Alignment explanation
Indices: 37578741--37578820 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
37578731 CAAAGATAAC
*
37578741 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
37578755 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
37578770 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
37578785 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
37578800 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
37578815 AAGAAA
1 AAGAAA
37578821 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:37578829 original size:15 final size:15
Alignment explanation
Indices: 37578752--37578829 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
37578742 AGAAAACCGA
37578752 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
37578767 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
37578781 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
37578796 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
37578812 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
37578827 ATA
1 ATA
37578830 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:37582972 original size:20 final size:20
Alignment explanation
Indices: 37582947--37582997 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
37582937 TAAAAAACCA
37582947 TCATCTAATGCCCATTTAAG
1 TCATCTAATGCCCATTTAAG
37582967 TCATCTAATGCCCATTTAAG
1 TCATCTAATGCCCATTTAAG
*
37582987 TCATTTAATGC
1 TCATCTAATGC
37582998 ATGCCATGGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATCTAATGCCCATTTAAG
Found at i:37585422 original size:10 final size:10
Alignment explanation
Indices: 37585406--37585463 Score: 64
Period size: 10 Copynumber: 5.7 Consensus size: 10
37585396 CAACTCCGAC
37585406 CAGCTCAATT
1 CAGCTCAATT
* *
37585416 GAGCTCATTT
1 CAGCTCAATT
37585426 CAGCTCAA-T
1 CAGCTCAATT
37585435 CGAGCTCAATT
1 C-AGCTCAATT
*
37585446 TAGCTACAATT
1 CAGCT-CAATT
37585457 CAGCTCA
1 CAGCTCA
37585464 TTTATTTTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
9 2 0.05
10 27 0.69
11 10 0.26
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (10 bp):
CAGCTCAATT
Found at i:37585429 original size:20 final size:20
Alignment explanation
Indices: 37585406--37585466 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
37585396 CAACTCCGAC
37585406 CAGCTCAATTGAGCTCATTT
1 CAGCTCAATTGAGCTCATTT
*
37585426 CAGCTCAATCGAGCTCAATTT
1 CAGCTCAATTGAGCTC-ATTT
*
37585447 -AGCTACAATTCAGCTCATTT
1 CAGCT-CAATTGAGCTCATTT
37585467 ATTTTATTGG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (20 bp):
CAGCTCAATTGAGCTCATTT
Found at i:37589874 original size:38 final size:39
Alignment explanation
Indices: 37589809--37589933 Score: 198
Period size: 39 Copynumber: 3.2 Consensus size: 39
37589799 GGACTCTAGC
* * * *
37589809 CCGGACATATTTCCAACACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
*
37589848 CCGGTTATAATTCCAGC-CATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
37589886 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
37589925 CCGGATATA
1 CCGGATATA
37589934 CATCACTGAA
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
38 36 0.46
39 43 0.54
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
Found at i:37597683 original size:23 final size:22
Alignment explanation
Indices: 37597631--37597683 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
37597621 TCCACGTCTT
*
37597631 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
37597653 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
37597676 TTTCTTTT
1 TTTCTTTT
37597684 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:37601443 original size:78 final size:77
Alignment explanation
Indices: 37601325--37601520 Score: 209
Period size: 78 Copynumber: 2.5 Consensus size: 77
37601315 ACTTGAAACC
** ** *
37601325 AATTACCAGCACA-AGCCTGCGAGAATTTAAACCCGGTATAATACCAGCTCGA-AGCCAGCGAGA
1 AATT-CCAGCACATAGCCTGCG-GACCTTAAGTCCGGTATAATACCAGCAC-ATAGCCAGCG-GA
*
37601388 -CTTTAGCCCGGACAT
62 CCTTAAGCCCGGACAT
* * * *
37601403 ATTTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGTTATAATTCCAGCACATAGCCTGCGGACCT
1 AATTCCAGCACATAGCCTGCGGACCTTAAGTCCGG-TATAATACCAGCACATAGCCAGCGGACCT
* *
37601468 TAAGTCCGGATAT
65 TAAGCCCGGACAT
37601481 AATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATA
1 AATTCCAGCACATAGCCTGCGGACCTTAAGTCCGG-TATA
37601521 CATCACTGAA
Statistics
Matches: 99, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
77 20 0.20
78 79 0.80
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (77 bp):
AATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGTATAATACCAGCACATAGCCAGCGGACCTT
AAGCCCGGACAT
Found at i:37601448 original size:39 final size:39
Alignment explanation
Indices: 37601395--37601520 Score: 216
Period size: 39 Copynumber: 3.2 Consensus size: 39
37601385 AGACTTTAGC
* * *
37601395 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
*
37601434 CCGGTTATAATTCCAGCACATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
37601473 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
37601512 CCGGATATA
1 CCGGATATA
37601521 CATCACTGAA
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 82 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
Found at i:37608528 original size:40 final size:40
Alignment explanation
Indices: 37608430--37608692 Score: 343
Period size: 40 Copynumber: 6.6 Consensus size: 40
37608420 TCCTCGTTCA
* * ** *
37608430 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* *
37608469 AATGCCTTCGGGACATAACCCGGATTTAACAATTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
37608509 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
37608549 TATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
37608589 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
37608629 AATGCCTTCGGAACTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGACTTAACCCGGATTTA-ACAAC-TCGCACG
* *
37608669 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
37608693 CAGCATTCAA
Statistics
Matches: 201, Mismatches: 20, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
39 34 0.17
40 161 0.80
41 6 0.03
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:37611427 original size:78 final size:78
Alignment explanation
Indices: 37611338--37611490 Score: 184
Period size: 78 Copynumber: 2.0 Consensus size: 78
37611328 TTAAACCCGG
* * * * * *
37611338 TATAATACCAGCTCGA-AGCCTGCGGGA-CTTTAGCCCGGACATATTTCTAGCACGTAGCCTGCG
1 TATAATACCAGCAC-ATAGCCTGC-AGACCTTAAGCCCGGACATAATTCCAGCACATAGCCTGCG
*
37611401 TACCTTAAGTCCAGT
64 GACCTTAAGTCCAGT
* * *
37611416 TATAATTCCAGCACATAGCCTGCAGACCTTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGA
1 TATAATACCAGCACATAGCCTGCAGACCTTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGA
37611481 CCTTAAGTCC
66 CCTTAAGTCC
37611491 GGATATACAT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
77 3 0.05
78 60 0.95
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.25
Consensus pattern (78 bp):
TATAATACCAGCACATAGCCTGCAGACCTTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGA
CCTTAAGTCCAGT
Found at i:37611429 original size:39 final size:38
Alignment explanation
Indices: 37611386--37611497 Score: 161
Period size: 39 Copynumber: 2.9 Consensus size: 38
37611376 ACATATTTCT
* *
37611386 AGCACGTAGCCTGCGTACCTTAAGTCCAGTTATAATTCC
1 AGCACATAGCCTGCG-ACCTTAAGTCCAGATATAATTCC
*
37611425 AGCACATAGCCTGCAGACCTTAAGTCCGGATATAATTCC
1 AGCACATAGCCTGC-GACCTTAAGTCCAGATATAATTCC
*
37611464 AGCACATAGCCTGCGGACCTTAAGTCCGGATATA
1 AGCACATAGCCTGC-GACCTTAAGTCCAGATATA
37611498 CATCACTGAA
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
39 67 0.99
40 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
AGCACATAGCCTGCGACCTTAAGTCCAGATATAATTCC
Found at i:37614944 original size:47 final size:47
Alignment explanation
Indices: 37614885--37615140 Score: 386
Period size: 47 Copynumber: 5.4 Consensus size: 47
37614875 GATGAACAAG
* * * *
37614885 GTGTGTATATGTGATAAGGCCTAATGGCCGATTTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
37614932 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * *
37614979 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATCTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
37615026 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * * * *
37615073 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
37615120 GTGTATATATGTGATAAGGCC
1 GTGTATATATGTGATAAGGCC
37615141 TTTGTGCTGA
Statistics
Matches: 189, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 189 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:37615136 original size:141 final size:141
Alignment explanation
Indices: 37614882--37615140 Score: 428
Period size: 141 Copynumber: 1.8 Consensus size: 141
37614872 ATTGATGAAC
* * * * *
37614882 AAGGTGTGTATATGTGATAAGGCCTAATGGCCGATTTGATGAATGTGAAAGTGTATATATGTGAT
1 AAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGAT
*
37614947 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCAACG
66 AAGACCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCAACG
37615012 TGATGAATCTG
131 TGATGAATCTG
37615023 AAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGAT
1 AAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGAT
* * * *
37615088 AAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTATATATGTGATAAGGCC
66 AAGACCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
37615141 TTTGTGCTGA
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
141 108 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (141 bp):
AAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGAT
AAGACCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCAACG
TGATGAATCTG
Found at i:37615404 original size:25 final size:25
Alignment explanation
Indices: 37615354--37615404 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
37615344 TGTGTGACAA
* *
37615354 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
37615379 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
37615404 C
1 C
37615405 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:37619103 original size:47 final size:47
Alignment explanation
Indices: 37619044--37619296 Score: 371
Period size: 47 Copynumber: 5.4 Consensus size: 47
37619034 GATGTACAAG
* * *
37619044 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
37619091 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * *
37619138 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATTTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * * * *
37619185 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
37619232 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
37619279 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
37619297 TCCCGAAGGG
Statistics
Matches: 185, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 185 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:37619295 original size:141 final size:141
Alignment explanation
Indices: 37619041--37619296 Score: 449
Period size: 141 Copynumber: 1.8 Consensus size: 141
37619031 ATTGATGTAC
* * *
37619041 AAGGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAGGTGTATATATGAGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
*
37619106 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCAACG
66 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAAATGTGATAAGGCCGAGTGGCCAACG
37619171 TGATGAATTTG
131 TGATGAATTTG
* *
37619182 AAGGTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTATATATGTGAT
1 AAGGTGTATATATGAGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
*
37619247 AAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAAATGTGATAAG
37619297 TCCCGAAGGG
Statistics
Matches: 108, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
141 108 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.28
Consensus pattern (141 bp):
AAGGTGTATATATGAGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAAATGTGATAAGGCCGAGTGGCCAACG
TGATGAATTTG
Found at i:37647221 original size:10 final size:10
Alignment explanation
Indices: 37647206--37647314 Score: 54
Period size: 10 Copynumber: 10.7 Consensus size: 10
37647196 AACTTTTTAG
37647206 AAATTATTAA
1 AAATTATTAA
37647216 AAATTA--AA
1 AAATTATTAA
37647224 AAATATAACTTAAA
1 AAAT-T-A-TT-AA
37647238 GAAAATTATTAA
1 -A-AATTATTAA
37647250 AAA-TA---A
1 AAATTATTAA
37647256 AAA-TATTAA
1 AAATTATTAA
*
37647265 AAATTAATAGA
1 AAATTATTA-A
*
37647276 AATTTATTAAAA
1 AAATTATT--AA
37647288 AAATTATTAA
1 AAATTATTAA
37647298 AAAGTTA-TAA
1 AAA-TTATTAA
37647308 AAATTAT
1 AAATTAT
37647315 AGAAAAATTG
Statistics
Matches: 78, Mismatches: 4, Indels: 34
0.67 0.03 0.29
Matches are distributed among these distances:
6 6 0.08
8 6 0.08
9 10 0.13
10 24 0.31
11 11 0.14
12 10 0.13
13 3 0.04
14 3 0.04
15 2 0.03
16 3 0.04
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (10 bp):
AAATTATTAA
Found at i:37647233 original size:34 final size:33
Alignment explanation
Indices: 37647206--37647288 Score: 103
Period size: 36 Copynumber: 2.4 Consensus size: 33
37647196 AACTTTTTAG
37647206 AAATTATTAAAAATTAAAAAATATAACTTAAAGA
1 AAATTATTAAAAA-TAAAAAATATAACTTAAAGA
* *
37647240 AAATTATTAAAAATAAAAATATTAAAAATTAATAGA
1 AAATTATTAAAAATAAAAA-A-TATAACTTAA-AGA
*
37647276 AATTTATTAAAAA
1 AAATTATTAAAAA
37647289 AATTATTAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
33 6 0.14
34 14 0.33
35 8 0.19
36 15 0.35
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.31
Consensus pattern (33 bp):
AAATTATTAAAAATAAAAAATATAACTTAAAGA
Found at i:37647262 original size:15 final size:15
Alignment explanation
Indices: 37647239--37647268 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
37647229 TAACTTAAAG
*
37647239 AAAATTATTAAAAAT
1 AAAAATATTAAAAAT
37647254 AAAAATATTAAAAAT
1 AAAAATATTAAAAAT
37647269 TAATAGAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
AAAAATATTAAAAAT
Found at i:37647293 original size:23 final size:22
Alignment explanation
Indices: 37647263--37647310 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
37647253 TAAAAATATT
* *
37647263 AAAAATTAATAGAAATTTATTAA
1 AAAAATTAATAAAAAGTTA-TAA
*
37647286 AAAAATTATTAAAAAGTTATAA
1 AAAAATTAATAAAAAGTTATAA
37647308 AAA
1 AAA
37647311 TTATAGAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (22 bp):
AAAAATTAATAAAAAGTTATAA
Found at i:37647305 original size:11 final size:10
Alignment explanation
Indices: 37647253--37647314 Score: 56
Period size: 10 Copynumber: 6.0 Consensus size: 10
37647243 TTATTAAAAA
37647253 TAAAAA-TAT
1 TAAAAATTAT
*
37647262 TAAAAATTAA
1 TAAAAATTAT
*
37647272 TAGAAATTTAT
1 TA-AAAATTAT
37647283 TAAAAAAATTAT
1 T--AAAAATTAT
37647295 TAAAAAGTTA-
1 TAAAAA-TTAT
37647305 TAAAAATTAT
1 TAAAAATTAT
37647315 AGAAAAATTG
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
9 9 0.21
10 15 0.35
11 10 0.23
12 8 0.19
13 1 0.02
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.35
Consensus pattern (10 bp):
TAAAAATTAT
Found at i:37647321 original size:33 final size:33
Alignment explanation
Indices: 37647239--37647321 Score: 80
Period size: 33 Copynumber: 2.5 Consensus size: 33
37647229 TAACTTAAAG
37647239 AAAATTATTAAAAATAAAAATATTAAAAATTAATA
1 AAAATTA-TAAAAA-AAAAATATTAAAAATTAATA
* * *
37647274 GAAATT-TATTAAAAAAATTATTAAAAAGTT-ATA
1 AAAATTATA-AAAAAAAAATATTAAAAA-TTAATA
*
37647307 AAAATTATAGAAAAA
1 AAAATTATAAAAAAA
37647322 TTGTTAGCTT
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
33 28 0.70
34 7 0.17
35 5 0.12
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (33 bp):
AAAATTATAAAAAAAAAATATTAAAAATTAATA
Found at i:37647327 original size:23 final size:23
Alignment explanation
Indices: 37647262--37647327 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 23
37647252 ATAAAAATAT
* *
37647262 TAAAAATTAATAG-AAATTTATTA
1 TAAAAATT-ATAGAAAAATTGTTA
* *
37647285 AAAAAATTAT-TAAAAA--GTTA
1 TAAAAATTATAGAAAAATTGTTA
37647305 TAAAAATTATAGAAAAATTGTTA
1 TAAAAATTATAGAAAAATTGTTA
37647328 GCTTGTTGGT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
20 12 0.36
21 5 0.15
22 5 0.15
23 11 0.33
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (23 bp):
TAAAAATTATAGAAAAATTGTTA
Found at i:37648396 original size:40 final size:40
Alignment explanation
Indices: 37648336--37648482 Score: 231
Period size: 40 Copynumber: 3.7 Consensus size: 40
37648326 CCAACCCAAT
* * * *
37648336 TGCCTTCGGGATTTAGCCCGGATATAACAAACAGCACAAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
* *
37648376 TGCCTTTGGGACTTAACCCGGATATAACAACCAGGACGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
37648416 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
*
37648456 TGCCTTCGGGACTTAACCCGAATATAA
1 TGCCTTCGGGACTTAACCCGGATATAA
37648483 TCCTCAATTG
Statistics
Matches: 98, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 98 1.00
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
Found at i:37650715 original size:10 final size:10
Alignment explanation
Indices: 37650700--37650783 Score: 50
Period size: 10 Copynumber: 8.3 Consensus size: 10
37650690 GTCATAATTT
37650700 TAAATTTTTA
1 TAAATTTTTA
37650710 TAAATTTTCT-
1 TAAATTTT-TA
*
37650720 TTAATTTTTA
1 TAAATTTTTA
*
37650730 TATATTTTT-
1 TAAATTTTTA
37650739 TGAAAATTTTTA
1 T--AAATTTTTA
* *
37650751 -AAAATTATA
1 TAAATTTTTA
*
37650760 TATATTATTCTA
1 TAAATT-TT-TA
37650772 -AAATTTTTA
1 TAAATTTTTA
37650781 TAA
1 TAA
37650784 CATTCAAATT
Statistics
Matches: 55, Mismatches: 10, Indels: 18
0.66 0.12 0.22
Matches are distributed among these distances:
9 11 0.20
10 29 0.53
11 13 0.24
12 2 0.04
ACGTcount: A:0.39, C:0.02, G:0.01, T:0.57
Consensus pattern (10 bp):
TAAATTTTTA
Found at i:37650825 original size:19 final size:19
Alignment explanation
Indices: 37650803--37650894 Score: 55
Period size: 18 Copynumber: 4.7 Consensus size: 19
37650793 TTTTTCTACT
37650803 TTTTATAT-TTTTAATAAAA
1 TTTTATATATTTT-ATAAAA
*
37650822 TTTTCTATATTTTATAAAA
1 TTTTATATATTTTATAAAA
** *
37650841 CAATTATAATATTTTTCTTAAAA
1 -TTTTAT-ATA-TTTT-ATAAAA
* *
37650864 ATTTATATCA-TTTA-AAAC
1 TTTTATAT-ATTTTATAAAA
37650882 TTTTATATATTTT
1 TTTTATATATTTT
37650895 TCTATTTTTT
Statistics
Matches: 57, Mismatches: 9, Indels: 15
0.70 0.11 0.19
Matches are distributed among these distances:
17 1 0.02
18 13 0.23
19 13 0.23
20 10 0.18
21 5 0.09
22 10 0.18
23 5 0.09
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTTATATATTTTATAAAA
Found at i:37651512 original size:29 final size:28
Alignment explanation
Indices: 37651470--37651527 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 28
37651460 GTGTTGAAAG
37651470 ATTGATTACTTATTTAGAAAAAAATTCTA
1 ATTGATTACTTATTTAG-AAAAAATTCTA
37651499 ATTGATTACTTATTTAGAAAAAATTCTA
1 ATTGATTACTTATTTAGAAAAAATTCTA
37651527 A
1 A
37651528 CATATGTGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 12 0.41
29 17 0.59
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.41
Consensus pattern (28 bp):
ATTGATTACTTATTTAGAAAAAATTCTA
Found at i:37652891 original size:47 final size:47
Alignment explanation
Indices: 37652818--37652951 Score: 152
Period size: 45 Copynumber: 2.9 Consensus size: 47
37652808 GGGTTATTGC
* *
37652818 GAGCTAGTGTAAGA-CATGTCTAGGACATGCATCGGCCACATTGTGA-
1 GAGCCAGTGTAAGACCATGTCTAGGACATGCATCGGCCACA-TGAGAT
*
37652864 GAGCCAGTGTAAGACCATGTC-AGGGACATGCATCGGCTAC--GAGAT
1 GAGCCAGTGTAAGACCATGTCTA-GGACATGCATCGGCCACATGAGAT
* * *
37652909 GTGTCAGTGTAAGACCATGTCTAGGACATGGCATCGGCGACAT
1 GAGCCAGTGTAAGACCATGTCTAGGACAT-GCATCGGCCACAT
37652952 ATGTAGACCA
Statistics
Matches: 75, Mismatches: 6, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
44 3 0.04
45 25 0.33
46 25 0.33
47 22 0.29
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.22
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTAGGACATGCATCGGCCACATGAGAT
Found at i:37654672 original size:204 final size:204
Alignment explanation
Indices: 37654322--37654721 Score: 764
Period size: 204 Copynumber: 2.0 Consensus size: 204
37654312 ACGGGTATGA
*
37654322 GTTGTTACATAACGAGGAGAGAAAAATTAATTTATTTTTATATAATTAATTTGTTTTACAGAAAA
1 GTTGTTACATAACGAGGAGAGAAAAATTAATTTATTTCTATATAATTAATTTGTTTTACAGAAAA
* *
37654387 AGTAGAGAAAGATTAATTTATTCTTGTAGACACTAATTTGATTTATAAATTTTTTCAAATTTTTG
66 AGTAGAGAAAGACTAATTTATTCTTGTAGACACTAAATTGATTTATAAATTTTTTCAAATTTTTG
37654452 ATTGGTCACTTTTTTTATTATTTTTATTTTTAGTATCAATTAGCAATTATATACAATATATTTTT
131 ATTGGTCACTTTTTTTATTATTTTTATTTTTAGTATCAATTAGCAATTATATACAATATATTTTT
37654517 TATGCACTG
196 TATGCACTG
37654526 GTTGTTACATAACGAGGAGAGAAAAATTAATTTATTTCTATATAATTAATTTGTTTTACAGAAAA
1 GTTGTTACATAACGAGGAGAGAAAAATTAATTTATTTCTATATAATTAATTTGTTTTACAGAAAA
*
37654591 AGTAGAGAAAGACTAATTTATTCTTGTAGACACTAAATTGATTTATAATTTTTTTCAAATTTTTG
66 AGTAGAGAAAGACTAATTTATTCTTGTAGACACTAAATTGATTTATAAATTTTTTCAAATTTTTG
37654656 ATTGGTCACTTTTTTTATTATTTTTATTTTTAGTATCAATTAGCAATTATATACAATATATTTTT
131 ATTGGTCACTTTTTTTATTATTTTTATTTTTAGTATCAATTAGCAATTATATACAATATATTTTT
37654721 T
196 T
37654722 TATGAAGTGC
Statistics
Matches: 192, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
204 192 1.00
ACGTcount: A:0.35, C:0.07, G:0.11, T:0.47
Consensus pattern (204 bp):
GTTGTTACATAACGAGGAGAGAAAAATTAATTTATTTCTATATAATTAATTTGTTTTACAGAAAA
AGTAGAGAAAGACTAATTTATTCTTGTAGACACTAAATTGATTTATAAATTTTTTCAAATTTTTG
ATTGGTCACTTTTTTTATTATTTTTATTTTTAGTATCAATTAGCAATTATATACAATATATTTTT
TATGCACTG
Found at i:37658574 original size:44 final size:44
Alignment explanation
Indices: 37658480--37658575 Score: 113
Period size: 44 Copynumber: 2.2 Consensus size: 44
37658470 GGCCCGATAT
* * * * *
37658480 CGAAAGCCGAATAGTATCTCACCGGCATTATAGCATGCTTGGCT
1 CGAAGGCCGAATAGTATCTCACCAGCATCATAGCATGCTAGGCA
* *
37658524 CAAAGGCCGAATAGTAT-TCCACCAGCATCATAGCCTGCTAGGCA
1 CGAAGGCCGAATAGTATCT-CACCAGCATCATAGCATGCTAGGCA
37658568 CGAAGGCC
1 CGAAGGCC
37658576 CGATACACAT
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
43 1 0.02
44 42 0.98
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.20
Consensus pattern (44 bp):
CGAAGGCCGAATAGTATCTCACCAGCATCATAGCATGCTAGGCA
Found at i:37658642 original size:43 final size:43
Alignment explanation
Indices: 37658555--37658914 Score: 536
Period size: 43 Copynumber: 8.5 Consensus size: 43
37658545 CCAGCATCAT
*
37658555 AGCCTGCTAGGCACGAAGGCCCG-ATACACATCACCGGCACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCAAGA
* * *
37658597 AGCCTTCTAGGCACGAAGGCCCAAATACACATCACCGGTAAGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCAAGA
* *
37658640 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCAAGA
37658683 AGCCTGCT-GGCACGAAGGCCCGAATACACATCACCGGCAAGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCAAGA
*
37658725 AGCCTGCTAGGCACAAAGGCCC-AATACACATCACCGGCACA-A
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCA-AGA
* * *
37658767 AGCCTGCTAGGCACGAAGGCCCGAGTTCACATCACTGGCAAGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCAAGA
*
37658810 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCAAGA
* *
37658853 AGCCTGCTAGGCACGAAGG-CCTAATACACA-CACCTGCACA-A
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCA-AGA
37658894 AGCCTGCTAGGCACGAAGGCC
1 AGCCTGCTAGGCACGAAGGCC
37658915 TAATTATAAT
Statistics
Matches: 288, Mismatches: 23, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
41 27 0.09
42 112 0.39
43 149 0.52
ACGTcount: A:0.31, C:0.33, G:0.24, T:0.11
Consensus pattern (43 bp):
AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCAAGA
Found at i:37658655 original size:85 final size:86
Alignment explanation
Indices: 37658555--37658914 Score: 570
Period size: 85 Copynumber: 4.2 Consensus size: 86
37658545 CCAGCATCAT
*
37658555 AGCCTGCTAGGCACGAAGGCCCG-ATACACATCACCGGCACGAAGCCTTCTAGGCACGAAGGCCC
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCC
* *
37658619 AAATACACATCACCGGTAAGA
66 GAATACACATCACCGGCAAGA
*
37658640 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAAGCCTGCT-GGCACGAAGGCCC
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCC
37658704 GAATACACATCACCGGCAAGA
66 GAATACACATCACCGGCAAGA
* *
37658725 AGCCTGCTAGGCACAAAGGCCC-AATACACATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCC
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCC
* * *
37658789 GAGTTCACATCACTGGCAAGA
66 GAATACACATCACCGGCAAGA
37658810 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGG-CC
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCC
* *
37658874 TAATACACA-CACCTGCACA-A
66 GAATACACATCACCGGCA-AGA
37658894 AGCCTGCTAGGCACGAAGGCC
1 AGCCTGCTAGGCACGAAGGCC
37658915 TAATTATAAT
Statistics
Matches: 254, Mismatches: 17, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
84 54 0.21
85 137 0.54
86 63 0.25
ACGTcount: A:0.31, C:0.33, G:0.24, T:0.11
Consensus pattern (86 bp):
AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCC
GAATACACATCACCGGCAAGA
Found at i:37663462 original size:78 final size:81
Alignment explanation
Indices: 37663321--37663502 Score: 225
Period size: 78 Copynumber: 2.3 Consensus size: 81
37663311 TACTCATTCA
* *
37663321 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* *
37663385 TTTAGTAAC-TCGCACC
66 TATAGTAACTTAGCA-C
37663401 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTC-CACAAATGCCTTC-GGATCTT-ACTCCG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAAC-CCG
* *
37663461 GATATGGTCACTTAGCAC
64 GATATAGTAACTTAGCAC
*
37663479 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
37663503 CATCATTCGA
Statistics
Matches: 90, Mismatches: 7, Indels: 11
0.83 0.06 0.10
Matches are distributed among these distances:
77 5 0.06
78 39 0.43
79 33 0.37
80 13 0.14
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:37663502 original size:40 final size:40
Alignment explanation
Indices: 37663319--37663502 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
37663309 GCTACTCATT
* *
37663319 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
37663359 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
37663399 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTC-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * *
37663437 CAAATGCCTTC-GGATCTTA-CTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGC-CCGGATATAGTAAC-TCGCA
37663478 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37663503 CATCATTCGA
Statistics
Matches: 124, Mismatches: 11, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
37 2 0.02
38 13 0.10
39 33 0.27
40 66 0.53
41 10 0.08
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:37664697 original size:56 final size:56
Alignment explanation
Indices: 37664630--37664805 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
37664620 TATTAGTTTA
37664630 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
37664686 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
37664742 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
37664798 TTGCCCAT
1 TTGCCCAT
37664806 CATCCCTTGT
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:37671365 original size:40 final size:40
Alignment explanation
Indices: 37671261--37671462 Score: 213
Period size: 40 Copynumber: 5.1 Consensus size: 40
37671251 CGGAATTTAA
** *
37671261 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37671301 CC-GCTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37671340 CCGGATTTAGTAACTCGCACCAATGCCTTC-GG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
37671378 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTA-C
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
37671417 TCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 -CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
37671458 CCGGA
1 CCGGA
37671463 CATCATTTGA
Statistics
Matches: 138, Mismatches: 14, Indels: 20
0.80 0.08 0.12
Matches are distributed among these distances:
38 35 0.25
39 35 0.25
40 55 0.40
41 13 0.09
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:37671446 original size:78 final size:80
Alignment explanation
Indices: 37671280--37671462 Score: 216
Period size: 78 Copynumber: 2.3 Consensus size: 80
37671270 GCTACTCGTT
* **
37671280 CAAATGCCTTCGGGACATAGCCCGCTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
37671344 ATTTAGTAACTCGCAC
65 ATATAGTAACTAGCAC
*
37671360 CAATGCCTTC-GG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTT-ACTCCG
1 CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAAC-CCG
* *
37671421 GATATGGTCACTTAGCA-
64 GATATAGTAAC-TAGCAC
37671438 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
37671463 CATCATTTGA
Statistics
Matches: 88, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
77 14 0.16
78 48 0.55
79 12 0.14
80 14 0.16
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:37672385 original size:56 final size:56
Alignment explanation
Indices: 37672318--37672493 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
37672308 TATTAGTTTA
37672318 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
37672374 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
37672430 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
37672486 TTGCCCAT
1 TTGCCCAT
37672494 CATCCCTTGT
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:37673912 original size:43 final size:43
Alignment explanation
Indices: 37673864--37674116 Score: 383
Period size: 43 Copynumber: 6.0 Consensus size: 43
37673854 CATTATAGCA
*
37673864 TGCTAGGCACGAAGGTCCGAATACACATCACCGACACGAAGCC
1 TGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAAGCC
37673907 TGCTAGGCACGAAGGCCCGAATACACATCACC-AGCACGAAGCC
1 TGCTAGGCACGAAGGCCCGAATACACATCACCGA-CACGAAGCC
37673950 TGCTAGGCACGAAGGCCCGAATACACATCACC-AGCACGAAGCC
1 TGCTAGGCACGAAGGCCCGAATACACATCACCGA-CACGAAGCC
* * * *
37673993 TGCTAGGCACGAAGGCCTGAATACACATCACTGGCAAGAAGCC
1 TGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAAGCC
*
37674036 TG-TAGGCACGAAGGCCCGAATACACATCACCG-CAAGAAG-C
1 TGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAAGCC
37674076 TGCTAGGCACGAAGGCCCGAATACACATCACCTG-CACGAAG
1 TGCTAGGCACGAAGGCCCGAATACACATCACC-GACACGAAG
37674117 GCCCGAATAC
Statistics
Matches: 198, Mismatches: 8, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
40 3 0.02
41 36 0.18
42 36 0.18
43 123 0.62
ACGTcount: A:0.33, C:0.32, G:0.24, T:0.11
Consensus pattern (43 bp):
TGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAAGCC
Found at i:37674113 original size:126 final size:129
Alignment explanation
Indices: 37673864--37674116 Score: 424
Period size: 126 Copynumber: 2.0 Consensus size: 129
37673854 CATTATAGCA
*
37673864 TGCTAGGCACGAAGGTCCGAATACACATCACCGACACGAAGCCTGCTAGGCACGAAGGCCCGAAT
1 TGCTAGGCACGAAGGTCCGAATACACATCACCGACAAGAAGCCTGCTAGGCACGAAGGCCCGAAT
*
37673929 ACACATCACCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAAGCC
66 ACACATCACCAGCAAGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAAGCC
* *
37673993 TGCTAGGCACGAAGG-CCTGAATACACATCACTGGCAAGAAGCCTG-TAGGCACGAAGGCCCGAA
1 TGCTAGGCACGAAGGTCC-GAATACACATCACCGACAAGAAGCCTGCTAGGCACGAAGGCCCGAA
*
37674056 TACACATCACC-GCAAGAAG-CTGCTAGGCACGAAGGCCCGAATACACATCACCTGCACGAAG
65 TACACATCACCAGCAAGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAAG
37674117 GCCCGAATAC
Statistics
Matches: 118, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
126 41 0.35
127 7 0.06
128 31 0.26
129 39 0.33
ACGTcount: A:0.33, C:0.32, G:0.24, T:0.11
Consensus pattern (129 bp):
TGCTAGGCACGAAGGTCCGAATACACATCACCGACAAGAAGCCTGCTAGGCACGAAGGCCCGAAT
ACACATCACCAGCAAGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAAGCC
Found at i:37674120 original size:27 final size:27
Alignment explanation
Indices: 37674081--37674143 Score: 117
Period size: 27 Copynumber: 2.3 Consensus size: 27
37674071 GAAGCTGCTA
37674081 GGCACGAAGGCCCGAATACACATCACC
1 GGCACGAAGGCCCGAATACACATCACC
*
37674108 TGCACGAAGGCCCGAATACACATCACC
1 GGCACGAAGGCCCGAATACACATCACC
37674135 GGCACGAAG
1 GGCACGAAG
37674144 CCTGCTAGGC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.33, C:0.35, G:0.24, T:0.08
Consensus pattern (27 bp):
GGCACGAAGGCCCGAATACACATCACC
Found at i:37690987 original size:31 final size:30
Alignment explanation
Indices: 37690921--37690995 Score: 80
Period size: 31 Copynumber: 2.4 Consensus size: 30
37690911 AAAAATTTAA
**
37690921 GAGAGAATTTGAGAGATTTTTGAGAGTTGATT
1 GAGA-AATTTGAGAGATTTAAGAGAGTTGA-T
37690953 GAGAAATTTGAGAGATTTAAGAGAGAATTG-T
1 GAGAAATTTGAGAGATTTAAGAGAG--TTGAT
*
37690984 GAGAAATGTGAG
1 GAGAAATTTGAG
37690996 TGAGAAAGTG
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
31 31 0.82
32 4 0.11
33 3 0.08
ACGTcount: A:0.37, C:0.00, G:0.32, T:0.31
Consensus pattern (30 bp):
GAGAAATTTGAGAGATTTAAGAGAGTTGAT
Found at i:37697764 original size:20 final size:20
Alignment explanation
Indices: 37697739--37697777 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
37697729 AGTTGAATGA
37697739 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
37697759 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
37697778 AATAGCTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:37704429 original size:20 final size:20
Alignment explanation
Indices: 37704404--37704442 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
37704394 AAAATTTCAA
37704404 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
37704424 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
37704443 AATAGCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:37716399 original size:43 final size:45
Alignment explanation
Indices: 37716317--37716407 Score: 159
Period size: 43 Copynumber: 2.1 Consensus size: 45
37716307 AACATACACA
37716317 CAAAGTAAGCTTTCAAAAAGCTTAGTAAGCTCATACTAAAATCAT
1 CAAAGTAAGCTTTCAAAAAGCTTAGTAAGCTCATACTAAAATCAT
*
37716362 CAAAGTAAGCTTTC-AAAAG-TTAGTAAGCTCGTACTAAAATCAT
1 CAAAGTAAGCTTTCAAAAAGCTTAGTAAGCTCATACTAAAATCAT
37716405 CAA
1 CAA
37716408 CAATATATAA
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
43 26 0.58
44 5 0.11
45 14 0.31
ACGTcount: A:0.44, C:0.18, G:0.12, T:0.26
Consensus pattern (45 bp):
CAAAGTAAGCTTTCAAAAAGCTTAGTAAGCTCATACTAAAATCAT
Found at i:37718989 original size:60 final size:59
Alignment explanation
Indices: 37718881--37719018 Score: 145
Period size: 59 Copynumber: 2.3 Consensus size: 59
37718871 ATTAGAGTTA
* * * *
37718881 ACTGGGCCTTAGCCCATATCAATATTAATCTAGGCCATAGCCCCTTACAATATC-AGAGTAT
1 ACTGGGCC-TAGCCCATATCAAGATCAATCCAGGCCATAGCCCATTACAA-ATCGAGA-TAT
* * *
37718942 ACTGGGCCTAGCCCATATC-AGATCAATCCGGGCCGTAGCCCTATTACAAGTCGAGATAT
1 ACTGGGCCTAGCCCATATCAAGATCAATCCAGGCCATAGCCC-ATTACAAATCGAGATAT
* *
37719001 ATTGGGCCTTGCCCATAT
1 ACTGGGCCTAGCCCATAT
37719019 TAACACAGTT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
59 38 0.58
60 20 0.30
61 8 0.12
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (59 bp):
ACTGGGCCTAGCCCATATCAAGATCAATCCAGGCCATAGCCCATTACAAATCGAGATAT
Found at i:37719064 original size:19 final size:19
Alignment explanation
Indices: 37719023--37719065 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
37719013 CCATATTAAC
* ** *
37719023 ACAGTTGGGCCATTTCAAT
1 ACAGTTGGCCCATAACAAA
37719042 ACAGTTGGCCCATAACAAA
1 ACAGTTGGCCCATAACAAA
37719061 ACAGT
1 ACAGT
37719066 CTCTATGATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (19 bp):
ACAGTTGGCCCATAACAAA
Found at i:37723017 original size:26 final size:26
Alignment explanation
Indices: 37722988--37723159 Score: 113
Period size: 26 Copynumber: 6.6 Consensus size: 26
37722978 ATATCGAGTC
*
37722988 CGCA-ACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTA-ATAATCAACT
* *
37723014 CGCA-ACCTTAGTGCTACTAATCAAAT
1 CGCACA-CTTAGTGCTAATAATCAACT
*
37723040 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTA-ATAATC-AACT
** ** *
37723068 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTG-CTAATAATCAACT
* **
37723095 CGCACACTTAGTGC--ATCATTCATTT
1 CGCACACTTAGTGCTAAT-AATCAACT
* *
37723120 CGCAC-CTTAGTGC-ACATAGTCAAAT
1 CGCACACTTAGTGCTA-ATAATCAACT
37723145 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37723160 GTCAATTTAT
Statistics
Matches: 120, Mismatches: 16, Indels: 19
0.77 0.10 0.12
Matches are distributed among these distances:
24 10 0.08
25 20 0.17
26 38 0.32
27 30 0.25
28 21 0.17
29 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (26 bp):
CGCACACTTAGTGCTAATAATCAACT
Found at i:37723105 original size:27 final size:27
Alignment explanation
Indices: 37723020--37723158 Score: 146
Period size: 27 Copynumber: 5.3 Consensus size: 27
37723010 AACTCGCAAC
* *
37723020 CTTAGTGCTAC-TAATCAAATCGCACA
1 CTTAGTGCCACATAGTCAAATCGCACA
*
37723046 CTTAGTGCTACATAGTCAAACTCGCACA
1 CTTAGTGCCACATAGTCAAA-TCGCACA
* * *
37723074 CTTAGTGCCGCATGGTCAATTCGCACA
1 CTTAGTGCCACATAGTCAAATCGCACA
**
37723101 CTTAGTG-CATCAT--TCATTTCGCAC-
1 CTTAGTGCCA-CATAGTCAAATCGCACA
37723125 CTTAGTG-CACATAGTCAAATCGCACA
1 CTTAGTGCCACATAGTCAAATCGCACA
37723151 CTTAGTGC
1 CTTAGTGC
37723159 TGTCAATTTA
Statistics
Matches: 97, Mismatches: 9, Indels: 13
0.82 0.08 0.11
Matches are distributed among these distances:
23 3 0.03
24 9 0.09
25 19 0.20
26 19 0.20
27 24 0.25
28 23 0.24
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (27 bp):
CTTAGTGCCACATAGTCAAATCGCACA
Found at i:37730470 original size:40 final size:40
Alignment explanation
Indices: 37730387--37730609 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
37730377 TTGAATGCTG
* * * * * *
37730387 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
37730427 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
**
37730467 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
37730507 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
37730547 TCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
37730586 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
37730610 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 34 0.21
40 119 0.74
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:37739797 original size:29 final size:28
Alignment explanation
Indices: 37739761--37739838 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
37739751 TCATGAGATT
37739761 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
37739791 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
37739818 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
37739839 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:37740056 original size:174 final size:174
Alignment explanation
Indices: 37739791--37740292 Score: 932
Period size: 174 Copynumber: 2.9 Consensus size: 174
37739781 AAATTGTACA
*
37739791 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
37739856 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
37739921 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
37739965 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
37740030 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCAAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
*
37740095 ATTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
37740139 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
37740204 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
37740269 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
37740293 ACCTTGAGTT
Statistics
Matches: 316, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 316 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:37743863 original size:23 final size:23
Alignment explanation
Indices: 37743837--37743881 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
37743827 TATGATAACC
*
37743837 ATGATCCTTGTTTATGGAGAAAT
1 ATGATCCTTGTTTATAGAGAAAT
37743860 ATGATCCTTGTTTATAGAGAAA
1 ATGATCCTTGTTTATAGAGAAA
37743882 GATTGCCTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (23 bp):
ATGATCCTTGTTTATAGAGAAAT
Found at i:37745461 original size:6 final size:6
Alignment explanation
Indices: 37745450--37745474 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
37745440 TTTGCAACCC
37745450 AAGGGG AAGGGG AAGGGG AAGGGG A
1 AAGGGG AAGGGG AAGGGG AAGGGG A
37745475 GAAGGCGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.64, T:0.00
Consensus pattern (6 bp):
AAGGGG
Found at i:37753223 original size:40 final size:40
Alignment explanation
Indices: 37753139--37753310 Score: 260
Period size: 40 Copynumber: 4.3 Consensus size: 40
37753129 ATATTCGGAT
*
37753139 TATAACCGGGCTAAGTCTCGAAGGCATTT-TGCGAGTTAC
1 TATATCCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTAC
*
37753178 TATATCCGGGCTAAGTCTTGAAGGCATTTGTGCGAGTTAC
1 TATATCCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTAC
* *
37753218 TATATCCGGGCTAAGTCTTGAAGGCCTTTGTGCGAGTTAC
1 TATATCCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTAC
* *
37753258 TATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGC
1 TATATCCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTA-C
37753298 TATATCC-GGCTAA
1 TATATCCGGGCTAA
37753311 AACTGAATGT
Statistics
Matches: 124, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
39 35 0.28
40 89 0.72
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTAC
Found at i:37761289 original size:40 final size:40
Alignment explanation
Indices: 37761234--37761330 Score: 144
Period size: 40 Copynumber: 2.5 Consensus size: 40
37761224 CGGATGATAA
*
37761234 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
37761274 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATAT
* *
37761314 CC-GGATAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
37761331 TTACTTGGGT
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
39 15 0.28
40 38 0.72
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATAT
Found at i:37769315 original size:40 final size:40
Alignment explanation
Indices: 37769260--37769432 Score: 296
Period size: 40 Copynumber: 4.3 Consensus size: 40
37769250 CGAATGATAA
37769260 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
37769300 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
37769340 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
37769380 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
37769420 CC-GGCTAAATCCC
1 CCGGGCTAAGTCCC
37769433 AAAGTTACTT
Statistics
Matches: 128, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
39 12 0.09
40 116 0.91
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:37778679 original size:34 final size:32
Alignment explanation
Indices: 37778640--37778733 Score: 100
Period size: 34 Copynumber: 2.8 Consensus size: 32
37778630 TCAAGCCCAT
* *
37778640 TGGGCCTAAGCCCTATTCAGATAACAGCAGGTAC
1 TGGGCCTAAGCCCTTTTCAGATAACAGCA--AAC
* *
37778674 TGGGCCGAAGCCCTTTTCAGA-ATACAGTAAAC
1 TGGGCCTAAGCCCTTTTCAGATA-ACAGCAAAC
*
37778706 TGGGCCTTAGCCCCTTTTCAGATAACAG
1 TGGGCCTAAG-CCCTTTTCAGATAACAG
37778734 TATGGCCCAT
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
32 10 0.20
33 16 0.31
34 25 0.49
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (32 bp):
TGGGCCTAAGCCCTTTTCAGATAACAGCAAAC
Found at i:37779107 original size:27 final size:26
Alignment explanation
Indices: 37779051--37779107 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
37779041 CAACCTTAAC
* *
37779051 CCTAGGGGTATAACAGAAATTTTGCT
1 CCTAGGGGTATAACAGAAATTTTCCA
*
37779077 CCTAGGGGTA-AATCTGTAAATTTTCCA
1 CCTAGGGGTATAA-CAG-AAATTTTCCA
37779104 CCTA
1 CCTA
37779108 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
25 2 0.08
26 12 0.46
27 12 0.46
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (26 bp):
CCTAGGGGTATAACAGAAATTTTCCA
Found at i:37780354 original size:12 final size:13
Alignment explanation
Indices: 37780312--37780371 Score: 59
Period size: 15 Copynumber: 4.4 Consensus size: 13
37780302 GGCTAAGGGG
37780312 GAAAAGAAGAAGA
1 GAAAAGAAGAAGA
* *
37780325 GAAAGTAGATGGAGA
1 GAAA--AGAAGAAGA
37780340 GAAAAGAA-AAGA
1 GAAAAGAAGAAGA
37780352 GAAGAAGAAGAAGAA
1 GAA-AAGAAGAAG-A
37780367 GAAAA
1 GAAAA
37780372 AACTGAATCC
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
12 6 0.16
13 12 0.32
14 5 0.13
15 15 0.39
ACGTcount: A:0.65, C:0.00, G:0.32, T:0.03
Consensus pattern (13 bp):
GAAAAGAAGAAGA
Found at i:37781152 original size:15 final size:15
Alignment explanation
Indices: 37781115--37781143 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
37781105 TTTTCCTATC
37781115 TAATAATAATAATTA
1 TAATAATAATAATTA
37781130 TAATAATAATAATT
1 TAATAATAATAATT
37781144 TTATAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATAATAATAATTA
Found at i:37781185 original size:25 final size:26
Alignment explanation
Indices: 37781130--37781191 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 26
37781120 ATAATAATTA
*
37781130 TAATAATAATAATTTTATAAATATATC
1 TAATAATAA-AAATTTATAAATATATC
* * *
37781157 TAATCATAAAAATTTA-AAATATCTG
1 TAATAATAAAAATTTATAAATATATC
37781182 TAATAATAAA
1 TAATAATAAA
37781192 TACAGTAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 16 0.53
26 6 0.20
27 8 0.27
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.39
Consensus pattern (26 bp):
TAATAATAAAAATTTATAAATATATC
Found at i:37781962 original size:30 final size:30
Alignment explanation
Indices: 37781927--37781990 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
37781917 CAACTTTTAT
*
37781927 AATTCTGATAACAATACTGTAGTACTTTTG
1 AATTCTGATAACAATACTGTAGTACTTTCG
** *
37781957 AATTCTGATAACGGTATTGTAGTACTTTCG
1 AATTCTGATAACAATACTGTAGTACTTTCG
37781987 AATT
1 AATT
37781991 TCTGTCAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (30 bp):
AATTCTGATAACAATACTGTAGTACTTTCG
Found at i:37783995 original size:42 final size:43
Alignment explanation
Indices: 37783913--37784006 Score: 118
Period size: 42 Copynumber: 2.2 Consensus size: 43
37783903 TCCCAGATGT
** * *
37783913 GGTCTTACATGTTATCAAATATCAATGCCACTGTCCCAGACAG
1 GGTCTTACATGAAATCAAATATCAATGCCAATATCCCAGACAG
* * *
37783956 GGTCTTACATGAAATCATATAT-GATGCCAATATCCCAGACAT
1 GGTCTTACATGAAATCAAATATCAATGCCAATATCCCAGACAG
37783998 GGTCTTACA
1 GGTCTTACA
37784007 CATCAATCAC
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
42 25 0.57
43 19 0.43
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (43 bp):
GGTCTTACATGAAATCAAATATCAATGCCAATATCCCAGACAG
Found at i:37784035 original size:43 final size:44
Alignment explanation
Indices: 37783894--37784050 Score: 130
Period size: 43 Copynumber: 3.7 Consensus size: 44
37783884 AGCTCGTACA
** ** *
37783894 ATGCCAACGTCCCAGATGTGGTCTT--ACATGTTATCA-AATATCA
1 ATGCCAACGTCCCAGACATGGTCTTACACATGAAATCACAA-AT-G
* * *
37783937 ATGCC-ACTGTCCCAGACAGGGTCTT--ACATGAAATCATATATG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACATGAAATCACAAATG
** *
37783979 ATGCCAATATCCCAGACATGGTCTTACACAT-CAATCACAAATG
1 ATGCCAACGTCCCAGACATGGTCTTACACATGAAATCACAAATG
*
37784022 ATGCTAACGTCCCAGACATGGTCTTACAC
1 ATGCCAACGTCCCAGACATGGTCTTACAC
37784051 GATAACACAC
Statistics
Matches: 93, Mismatches: 16, Indels: 10
0.78 0.13 0.08
Matches are distributed among these distances:
42 22 0.24
43 66 0.71
44 5 0.05
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACACATGAAATCACAAATG
Found at i:37786308 original size:49 final size:48
Alignment explanation
Indices: 37786255--37786383 Score: 136
Period size: 49 Copynumber: 2.6 Consensus size: 48
37786245 ACATCAAAGT
*
37786255 TGATGCCATGTCCCAAACAGGTCTTACACTAACT-TCCATACATCTAGG-C
1 TGATGCCATGTCCCAGACAGGTCTTACACTAACTCT-CATACAT-T-GGTC
* * * ** * *
37786304 TGATGCCGTGTCCTAGACAAGTCTTACACTGGCTCTCATCCATTGGTG
1 TGATGCCATGTCCCAGACAGGTCTTACACTAACTCTCATACATTGGTC
37786352 TCGATGCCATGTCCCAGACAGGTCTTACACTA
1 T-GATGCCATGTCCCAGACAGGTCTTACACTA
37786384 GCTTGTATAT
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
47 2 0.03
48 2 0.03
49 60 0.92
50 1 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
TGATGCCATGTCCCAGACAGGTCTTACACTAACTCTCATACATTGGTC
Found at i:37786376 original size:98 final size:97
Alignment explanation
Indices: 37786256--37786436 Score: 247
Period size: 98 Copynumber: 1.9 Consensus size: 97
37786246 CATCAAAGTT
* * *
37786256 GATGCCATGTCCCAAACAGGTCTTACACTAACTTCCATA-CATCTAGGCTGATGCCGTGTCCTAG
1 GATGCCATGTCCCAAACAGGTCTTACACTAACTTCCATATC-TCGAGGCCGATG-CATGTCCTAG
*
37786320 ACAAGTCTTACACTGGCTCTCATCCATTGGTGTC
64 ACAAGTCTTACACTAGCTCTCATCCATTGGTGTC
* * ** *
37786354 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATGTCTTAGAC
1 GATGCCATGTCCCAAACAGGTCTTACACTAACTTCCATATCTCGAGGCCGATGCATGTCCTAGAC
*
37786419 ATGTCTTACACTAGCTCT
66 AAGTCTTACACTAGCTCT
37786437 TGTTTCAATG
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
97 26 0.36
98 45 0.62
99 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (97 bp):
GATGCCATGTCCCAAACAGGTCTTACACTAACTTCCATATCTCGAGGCCGATGCATGTCCTAGAC
AAGTCTTACACTAGCTCTCATCCATTGGTGTC
Found at i:37786425 original size:48 final size:48
Alignment explanation
Indices: 37786353--37786507 Score: 181
Period size: 48 Copynumber: 3.2 Consensus size: 48
37786343 CCATTGGTGT
*
37786353 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGC
** * * *
37786402 CGATGCATGTCTTAGACATGTCTTACACTAGCTCT-TGT-T-TCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-TGTATATCTCGAGGC
* * *
37786448 CGATGCATGTCCCAGACATGTTTTACACTGGCTGGTATATCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGC
*
37786496 CAATGCATGTCC
1 CGATGCATGTCC
37786508 TAAAAATTTA
Statistics
Matches: 87, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
46 36 0.41
47 2 0.02
48 43 0.49
49 6 0.07
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.30
Consensus pattern (48 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGC
Found at i:37786522 original size:94 final size:95
Alignment explanation
Indices: 37786353--37786530 Score: 250
Period size: 94 Copynumber: 1.9 Consensus size: 95
37786343 CCATTGGTGT
* * * *
37786353 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATGTCTTAGA
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTGGTATATCTCGAGGCCAATGCATGTCCTAAA
* *
37786418 CATGTCTTACACTAGCTCTTGTTTCAATGC
66 AATGTATTACACTAGCTCTTGTTTCAATGC
* * *
37786448 CGATG-CATGTCCCAGACATGTTTTACACTGGCTGGTATATCTCGAGGCCAATGCATGTCCTAAA
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTGGTATATCTCGAGGCCAATGCATGTCCTAAA
* *
37786512 AATTTATTACACTGGCTCT
66 AATGTATTACACTAGCTCT
37786531 CAATATCTGG
Statistics
Matches: 72, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
94 67 0.93
95 5 0.07
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (95 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTAGCTGGTATATCTCGAGGCCAATGCATGTCCTAAA
AATGTATTACACTAGCTCTTGTTTCAATGC
Found at i:37786548 original size:94 final size:93
Alignment explanation
Indices: 37786359--37786573 Score: 243
Period size: 94 Copynumber: 2.3 Consensus size: 93
37786349 GTGTCGATGC
* * * * * * * *
37786359 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATGTCTTAGACATGTC
1 CATGTCCCAGACATGTTTTACACTAGCTGGTATATCTCGAGGCCAATGCATGTCCTAAAAATGTA
** * *
37786424 TTACACTAGCTCTTGTTTCAATGCCGATG
66 TTACACTAGCTCTAATATC-ATGCCAATG
* *
37786453 CATGTCCCAGACATGTTTTACACTGGCTGGTATATCTCGAGGCCAATGCATGTCCTAAAAATTTA
1 CATGTCCCAGACATGTTTTACACTAGCTGGTATATCTCGAGGCCAATGCATGTCCTAAAAATGTA
*
37786518 TTACACTGGCTCTCAATATC-TGGCCAATG
66 TTACACTAGCTCT-AATATCAT-GCCAATG
* *
37786547 CATGTCCCAAACATGTTTTACATTAGC
1 CATGTCCCAGACATGTTTTACACTAGC
37786574 ACACATATCA
Statistics
Matches: 101, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
93 1 0.01
94 97 0.96
95 3 0.03
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (93 bp):
CATGTCCCAGACATGTTTTACACTAGCTGGTATATCTCGAGGCCAATGCATGTCCTAAAAATGTA
TTACACTAGCTCTAATATCATGCCAATG
Found at i:37786568 original size:46 final size:46
Alignment explanation
Indices: 37786450--37786568 Score: 136
Period size: 46 Copynumber: 2.5 Consensus size: 46
37786440 TTCAATGCCG
* *
37786450 ATGCATGTCCCAGACATGTTTTACACTGGCTGGTATATCTCGAGGCCA
1 ATGCATGTCCCAAACATGTTTTACACTGGCTGCTATATCT--AGGCCA
* *
37786498 ATGCATGTCCTAAAAAT-TTATTACACTGGCT-CTCAATATCT-GGCCA
1 ATGCATGTCCCAAACATGTT-TTACACTGGCTGCT--ATATCTAGGCCA
37786544 ATGCATGTCCCAAACATGTTTTACA
1 ATGCATGTCCCAAACATGTTTTACA
37786569 TTAGCACACA
Statistics
Matches: 61, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
46 25 0.41
47 5 0.08
48 25 0.41
49 6 0.10
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (46 bp):
ATGCATGTCCCAAACATGTTTTACACTGGCTGCTATATCTAGGCCA
Found at i:37789032 original size:18 final size:18
Alignment explanation
Indices: 37789009--37789043 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37788999 TTCCTGGGTG
*
37789009 GTAGTCGATTATCAACTT
1 GTAGTCCATTATCAACTT
*
37789027 GTAGTCCTTTATCAACT
1 GTAGTCCATTATCAACT
37789044 CCAACCATCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.40
Consensus pattern (18 bp):
GTAGTCCATTATCAACTT
Found at i:37793371 original size:49 final size:46
Alignment explanation
Indices: 37793218--37793432 Score: 177
Period size: 49 Copynumber: 4.5 Consensus size: 46
37793208 GATGCCGACA
* * *
37793218 CCATGTCCCAGACATGGTCTTACTCTGGCTAAC-ACATCAGGGTCGATG
1 CCATGTCCCAGACA-GGTCTTACACTGACTCACAACAT-A-GGTCGATG
* * *
37793266 CCATGTGCCAGACAGGTCTTACACTGACTTC-CATATATCGAGGTTGATG
1 CCATGTCCCAGACAGGTCTTACACTGAC-TCACA-ACAT--AGGTCGATG
* * * * *
37793315 TCGTGTCCCAGACAGGTCTTACACTGTCTCTCATCCATTAGTGTCGATG
1 CCATGTCCCAGACAGGTCTTACACTGACTCACA-ACA-TAG-GTCGATG
* * * *
37793364 CCATGTCCTAGACAGGTCTTACATTGACACACAACA-AGCT-GATG
1 CCATGTCCCAGACAGGTCTTACACTGACTCACAACATAGGTCGATG
37793408 CCATGTCCCAGACAGGTCTTACACT
1 CCATGTCCCAGACAGGTCTTACACT
37793433 AGCTTGTATA
Statistics
Matches: 135, Mismatches: 25, Indels: 18
0.76 0.14 0.10
Matches are distributed among these distances:
44 27 0.20
45 1 0.01
46 2 0.01
47 13 0.10
48 20 0.15
49 70 0.52
50 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.27
Consensus pattern (46 bp):
CCATGTCCCAGACAGGTCTTACACTGACTCACAACATAGGTCGATG
Found at i:37793612 original size:46 final size:48
Alignment explanation
Indices: 37793401--37793632 Score: 190
Period size: 46 Copynumber: 4.9 Consensus size: 48
37793391 CACACAACAA
* *
37793401 GCTGATGCCATGTCCCAGACAGGTCTTACACTAGCT-TGTATATCTCGAG
1 GCTGATG-CATGTCCCAGACATGTCTTACACTAGCTCT-CATATCTCGAG
* * * * * *
37793450 GCTGATGCATGTCCCTGACATTTCTTACACTATCTCTC--GTCTCAAT
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATCTCGAG
* * * * *
37793496 GCCGATGCATGTCCCAAACATGTTTTACA-TAGGCTGGT-ATATCTTGAG
1 GCTGATGCATGTCCCAGACATGTCTTACACTA-GCT-CTCATATCTCGAG
* * * * * *
37793544 GCCGATGTATGTCCTAGTCATGTCTTACACTAGCTCTCA-ATAT-GTG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATCTCGAG
* *
37793590 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACACATATC
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATC
37793633 ACCCGATGTC
Statistics
Matches: 141, Mismatches: 34, Indels: 18
0.73 0.18 0.09
Matches are distributed among these distances:
45 2 0.01
46 66 0.47
47 7 0.05
48 56 0.40
49 10 0.07
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.31
Consensus pattern (48 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATCTCGAG
Found at i:37793632 original size:94 final size:93
Alignment explanation
Indices: 37793401--37793623 Score: 236
Period size: 94 Copynumber: 2.4 Consensus size: 93
37793391 CACACAACAA
* * *
37793401 GCTGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCTGATGCATGTCCCT
1 GCTGATG-CATGTCCCAGACATGTCTTACACTAGCTCGTATATCTCGAGGCCGATGCATGTCCCT
* * * *
37793466 GACATTTCTTACACTATCTCTCGTCTCAAT
65 GACATGTCTTACACTAGCTCTCATAT-AAT
* * * * * *
37793496 GCCGATGCATGTCCCAAACATGTTTTACA-TAGGCTGGTATATCTTGAGGCCGATGTATGT-CCT
1 GCTGATGCATGTCCCAGACATGTCTTACACTA-GCTCGTATATCTCGAGGCCGATGCATGTCCCT
* *
37793559 AGTCATGTCTTACACTAGCTCTCA-ATATGT
65 -GACATGTCTTACACTAGCTCTCATATA-AT
37793589 GGCTGATGCATGTCCCAGACATGTCTTACACTAGC
1 -GCTGATGCATGTCCCAGACATGTCTTACACTAGC
37793624 ACACATATCA
Statistics
Matches: 106, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
92 1 0.01
93 7 0.07
94 90 0.85
95 8 0.08
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (93 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCGTATATCTCGAGGCCGATGCATGTCCCTG
ACATGTCTTACACTAGCTCTCATATAAT
Found at i:37796064 original size:16 final size:17
Alignment explanation
Indices: 37796037--37796069 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
37796027 CTAGCCTTGC
37796037 AAAAAATCTAAAAGGGA
1 AAAAAATCTAAAAGGGA
*
37796054 AAAAAAT-TAAACGGGA
1 AAAAAATCTAAAAGGGA
37796070 TGAGCTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.64, C:0.06, G:0.18, T:0.12
Consensus pattern (17 bp):
AAAAAATCTAAAAGGGA
Found at i:37799517 original size:40 final size:40
Alignment explanation
Indices: 37799473--37799586 Score: 142
Period size: 40 Copynumber: 2.9 Consensus size: 40
37799463 ATAATTATTG
37799473 CTTGAATGCACATACGTGCCCCTGTTTATACTTTGGTACC
1 CTTGAATGCACATACGTGCCCCTGTTTATACTTTGGTACC
* * * * **
37799513 CTTGAATACACATACATACCCCTGTTTGTACTTCAGTACC
1 CTTGAATGCACATACGTGCCCCTGTTTATACTTTGGTACC
*
37799553 C-CGAATGCACATACGTGCCCCTG-TTAGTACTTTG
1 CTTGAATGCACATACGTGCCCCTGTTTA-TACTTTG
37799587 TTAACCCTGA
Statistics
Matches: 60, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
38 2 0.03
39 23 0.38
40 35 0.58
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.32
Consensus pattern (40 bp):
CTTGAATGCACATACGTGCCCCTGTTTATACTTTGGTACC
Found at i:37800632 original size:14 final size:15
Alignment explanation
Indices: 37800600--37800633 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
37800590 TATGATTTAT
37800600 ATGTTTTGAATGTTA
1 ATGTTTTGAATGTTA
*
37800615 ATGTTTTTAATG-TA
1 ATGTTTTGAATGTTA
37800629 ATGTT
1 ATGTT
37800634 ATATTGACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.26, C:0.00, G:0.18, T:0.56
Consensus pattern (15 bp):
ATGTTTTGAATGTTA
Found at i:37801791 original size:22 final size:22
Alignment explanation
Indices: 37801763--37801807 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
37801753 GTTCACTGGC
37801763 AGAGATAAACCAAGGCAAAGCA
1 AGAGATAAACCAAGGCAAAGCA
37801785 AGAGATAAACCAAGGCAAAGCA
1 AGAGATAAACCAAGGCAAAGCA
37801807 A
1 A
37801808 TTTTAAGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.56, C:0.18, G:0.22, T:0.04
Consensus pattern (22 bp):
AGAGATAAACCAAGGCAAAGCA
Found at i:37806862 original size:43 final size:43
Alignment explanation
Indices: 37806797--37806897 Score: 125
Period size: 43 Copynumber: 2.4 Consensus size: 43
37806787 ACCTATAGCG
* * *
37806797 GACACACA-CCATGTCGCATAGCCGTGTGTGACACACGGCTGA
1 GACACACAGCCGTGTCGCATAGCCATGTGTCACACACGGCTGA
** *
37806839 GACACACAGCCGTGTCGGGTAGCCATGTGTCACACATGGCTGA
1 GACACACAGCCGTGTCGCATAGCCATGTGTCACACACGGCTGA
37806882 GACACAC-GCCTGTGTC
1 GACACACAGCC-GTGTC
37806898 TTAGACCGTG
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
42 11 0.22
43 40 0.78
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (43 bp):
GACACACAGCCGTGTCGCATAGCCATGTGTCACACACGGCTGA
Found at i:37820608 original size:130 final size:130
Alignment explanation
Indices: 37820241--37820716 Score: 579
Period size: 130 Copynumber: 3.7 Consensus size: 130
37820231 TATTTAGTCC
* * * * * * *
37820241 AACGAGAAAATCGAAACCCAGCAC-AGTAGGGCACGACTCCTCCAATTTCTAGACATTG-GACAT
1 AACGAG-AAATCGCAACCCAGCACGA-TAGGGCACGATTCC-CGAATTGCCAAACATTGAG-TAT
** * * * * *
37820304 TGCCTT-ATTTT--AGAATTTGGAGAA-CATGAGTGAAATTCTAAAGGAATATTCGATTATTTTG
62 TGCCTTCATTTTAGAGAATTTTTAAAAGCATGAGTGAAATCCCAAAGGAATATTTGATTGTTTTG
37820365 AACA
127 AACA
* * * ** *
37820369 AAC-AGGAGATCGCAACCCAACACGATAGGGCACGATTCCCTGAATTGCTAAACATTGAACATTA
1 AACGA-GAAATCGCAACCCAGCACGATAGGGCACGATTCCC-GAATTGCCAAACATTGAGTATTG
*
37820433 CCTTCATTTTGGAGAATTTTTAAAAGCATGAGTGAAATCCCAAAGGAATATTTGATTGTTTTGAA
64 CCTTCATTTTAGAGAATTTTTAAAAGCATGAGTGAAATCCCAAAGGAATATTTGATTGTTTTGAA
37820498 CA
129 CA
* ** *
37820500 AACGAGAAATCGCAACCCAGCACGATAGGGCACGATTCCCGAATTTCCAAACACCGAGTATCGCC
1 AACGAGAAATCGCAACCCAGCACGATAGGGCACGATTCCCGAATTGCCAAACATTGAGTATTGCC
*
37820565 TTCATTTTAGAGAATTTTTAAAAGTATGAGTGAAATCCCAAAGGAATATTTGATTGTTTTGAACA
66 TTCATTTTAGAGAATTTTTAAAAGCATGAGTGAAATCCCAAAGGAATATTTGATTGTTTTGAACA
* *
37820630 AACGAAAAATCGCAACCCAGCACGATAGGGCACGATTCTCGAATTGCCAAACATTGAGTATTGCC
1 AACGAGAAATCGCAACCCAGCACGATAGGGCACGATTCCCGAATTGCCAAACATTGAGTATTGCC
* *
37820695 TTCGTTTTAAAGAATTTTTAAA
66 TTCATTTTAGAGAATTTTTAAA
37820717 TGAATAGCTT
Statistics
Matches: 303, Mismatches: 36, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
126 1 0.00
127 49 0.16
128 10 0.03
130 169 0.56
131 73 0.24
132 1 0.00
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (130 bp):
AACGAGAAATCGCAACCCAGCACGATAGGGCACGATTCCCGAATTGCCAAACATTGAGTATTGCC
TTCATTTTAGAGAATTTTTAAAAGCATGAGTGAAATCCCAAAGGAATATTTGATTGTTTTGAACA
Found at i:37826473 original size:28 final size:28
Alignment explanation
Indices: 37826441--37826568 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
37826431 ATAGTAAGTC
*
37826441 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
37826469 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
37826498 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
37826526 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
37826555 CGCACACTTAGTGC
1 CGCACACTTAGTGC
37826569 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:37826531 original size:57 final size:57
Alignment explanation
Indices: 37826440--37826568 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
37826430 TATAGTAAGT
*
37826440 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
37826497 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
37826554 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
37826569 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:37834513 original size:28 final size:28
Alignment explanation
Indices: 37834481--37834608 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
37834471 ATAGTAAGTC
*
37834481 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
37834509 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
37834538 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
37834566 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
37834595 CGCACACTTAGTGC
1 CGCACACTTAGTGC
37834609 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:37834571 original size:57 final size:57
Alignment explanation
Indices: 37834480--37834608 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
37834470 TATAGTAAGT
*
37834480 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
37834537 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
37834594 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
37834609 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:37836475 original size:29 final size:27
Alignment explanation
Indices: 37836443--37836518 Score: 73
Period size: 29 Copynumber: 2.7 Consensus size: 27
37836433 CTTATGAATG
37836443 TGAACTGGGCCTAGTGGGCCATAACAATA
1 TGAACTGGGCCTAGTGGGCCAT-ACAA-A
* * *
37836472 TGAACTAGGCC-AGATGGGTCATACGAA
1 TGAACTGGGCCTAG-TGGGCCATACAAA
*
37836499 TGAGATTGGGCCTAGTGGGC
1 TGA-ACTGGGCCTAGTGGGC
37836519 GTGTATGTAA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
27 4 0.11
28 15 0.39
29 19 0.50
ACGTcount: A:0.28, C:0.18, G:0.33, T:0.21
Consensus pattern (27 bp):
TGAACTGGGCCTAGTGGGCCATACAAA
Found at i:37840547 original size:40 final size:40
Alignment explanation
Indices: 37840500--37840594 Score: 174
Period size: 40 Copynumber: 2.4 Consensus size: 40
37840490 TCCAATTTCT
37840500 AGCACAAAGCCTGCGGGATTTAACCCGGATATCTATTACC
1 AGCACAAAGCCTGCGGGATTTAACCCGGATATCTATTACC
37840540 AGCACAAAGCCTGCGGGATTTAACCCGGATATCTATTACC
1 AGCACAAAGCCTGCGGGATTTAACCCGGATATCTATTACC
*
37840580 AGCAC-AAGCTTGCGG
1 AGCACAAAGCCTGCGG
37840595 ACTATAAGTC
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
39 9 0.17
40 45 0.83
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.21
Consensus pattern (40 bp):
AGCACAAAGCCTGCGGGATTTAACCCGGATATCTATTACC
Found at i:37840608 original size:40 final size:40
Alignment explanation
Indices: 37840500--37840611 Score: 156
Period size: 40 Copynumber: 2.8 Consensus size: 40
37840490 TCCAATTTCT
*
37840500 AGCACAAAGCCTGCGGGATTTAACCCGGATATCTATTACC
1 AGCACAAAGCCTGCGGGATATAACCCGGATATCTATTACC
*
37840540 AGCACAAAGCCTGCGGGATTTAACCCGGATATCTATTACC
1 AGCACAAAGCCTGCGGGATATAACCCGGATATCTATTACC
* *
37840580 AGCAC-AAGCTTGC-GGACTATAAGTCCGGATAT
1 AGCACAAAGCCTGCGGGA-TATAA-CCCGGATAT
37840612 ATTCCTTCAA
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
38 3 0.04
39 11 0.16
40 53 0.79
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.22
Consensus pattern (40 bp):
AGCACAAAGCCTGCGGGATATAACCCGGATATCTATTACC
Found at i:37849368 original size:27 final size:27
Alignment explanation
Indices: 37849334--37849418 Score: 118
Period size: 27 Copynumber: 3.1 Consensus size: 27
37849324 TAGATAAGTT
37849334 GTAGAATTA-CGAAAATACCCCTGTAAG
1 GTAGAATTACCG-AAATACCCCTGTAAG
*
37849361 GTAGAATTACCGAAATACCCTTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAAG
* * *
37849388 ATAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAAG
37849415 GTAG
1 GTAG
37849419 GACTACCAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
27 49 0.96
28 2 0.04
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.22
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAAG
Found at i:37850110 original size:27 final size:27
Alignment explanation
Indices: 37850067--37850146 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
37850057 CCTCACTGGA
*
37850067 ATCTGGTGGCCTTGCCACATATATCTGT
1 ATCTGGTGGCCTAGCCACA-ATATCTGT
37850095 -TCTGGTGGCCTAGCCACAATATCTGT
1 ATCTGGTGGCCTAGCCACAATATCTGT
* * * *
37850121 ATCTGGTGACTTCGTCACAATATCTG
1 ATCTGGTGGCCTAGCCACAATATCTG
37850147 GCAGCCTCAC
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
26 8 0.17
27 38 0.83
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (27 bp):
ATCTGGTGGCCTAGCCACAATATCTGT
Found at i:37857672 original size:16 final size:16
Alignment explanation
Indices: 37857651--37857682 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37857641 GTTCTAAAGC
37857651 CCCAAAAATCCTGAAA
1 CCCAAAAATCCTGAAA
*
37857667 CCCAAAAATCTTGAAA
1 CCCAAAAATCCTGAAA
37857683 TCCTGAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.28, G:0.06, T:0.16
Consensus pattern (16 bp):
CCCAAAAATCCTGAAA
Found at i:37858944 original size:16 final size:16
Alignment explanation
Indices: 37858917--37858959 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
37858907 ATGAATCGAC
*
37858917 AAAAGTCGAAATGCC-
1 AAAAGCCGAAATGCCG
37858932 AAAATGCCGAAATGCCG
1 AAAA-GCCGAAATGCCG
37858949 AAAAGCCGAAA
1 AAAAGCCGAAA
37858960 GTTGCGCTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 4 0.16
16 17 0.68
17 4 0.16
ACGTcount: A:0.49, C:0.21, G:0.21, T:0.09
Consensus pattern (16 bp):
AAAAGCCGAAATGCCG
Found at i:37859088 original size:19 final size:19
Alignment explanation
Indices: 37859056--37859093 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
37859046 ACATGGGTTG
*
37859056 AGAATTGGCCAAATGGGCC
1 AGAATGGGCCAAATGGGCC
*
37859075 AGAATGGGCTAAATGGGCC
1 AGAATGGGCCAAATGGGCC
37859094 TAATGGGTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.18, G:0.34, T:0.16
Consensus pattern (19 bp):
AGAATGGGCCAAATGGGCC
Found at i:37859089 original size:9 final size:9
Alignment explanation
Indices: 37859062--37859100 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
37859052 GTTGAGAATT
37859062 GGCCAAATG
1 GGCCAAATG
37859071 GGCCAGAATG
1 GGCCA-AATG
*
37859081 GGCTAAATG
1 GGCCAAATG
*
37859090 GGCCTAATG
1 GGCCAAATG
37859099 GG
1 GG
37859101 TTGTTGGCCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
9 18 0.69
10 8 0.31
ACGTcount: A:0.28, C:0.18, G:0.38, T:0.15
Consensus pattern (9 bp):
GGCCAAATG
Found at i:37859223 original size:29 final size:29
Alignment explanation
Indices: 37859181--37859292 Score: 138
Period size: 29 Copynumber: 3.9 Consensus size: 29
37859171 ATAATATGAT
*
37859181 TTGGGCCTAATGGGCCATATGAATGTGAA
1 TTGGGCCTAGTGGGCCATATGAATGTGAA
* *
37859210 TTGGGCCTAGTGGGCCATAAGAATATGAA
1 TTGGGCCTAGTGGGCCATATGAATGTGAA
* *
37859239 CTGGGCC-AGATGGGCCATATGAATGAG-A
1 TTGGGCCTAG-TGGGCCATATGAATGTGAA
* *
37859267 TTGGGCCTAGGGGGCCATATGCATGT
1 TTGGGCCTAGTGGGCCATATGAATGT
37859293 ATGTAGGGGT
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
28 22 0.31
29 48 0.69
ACGTcount: A:0.26, C:0.16, G:0.34, T:0.24
Consensus pattern (29 bp):
TTGGGCCTAGTGGGCCATATGAATGTGAA
Found at i:37859245 original size:58 final size:57
Alignment explanation
Indices: 37859173--37859285 Score: 165
Period size: 58 Copynumber: 2.0 Consensus size: 57
37859163 GCATGAGTAT
** * *
37859173 AATATGATTTGGGCCTA-ATGGGCCATATGAATGTGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAACTGGGCC-AGATGGGCCATATGAATGAG-ATTGGGCCTAGGGGGCCATAAG
37859231 AATATGAACTGGGCCAGATGGGCCATATGAATGAGATTGGGCCTAGGGGGCCATA
1 AATATGAACTGGGCCAGATGGGCCATATGAATGAGATTGGGCCTAGGGGGCCATA
37859286 TGCATGTATG
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
57 20 0.40
58 30 0.60
ACGTcount: A:0.28, C:0.15, G:0.33, T:0.24
Consensus pattern (57 bp):
AATATGAACTGGGCCAGATGGGCCATATGAATGAGATTGGGCCTAGGGGGCCATAAG
Found at i:37863187 original size:40 final size:39
Alignment explanation
Indices: 37863137--37863271 Score: 207
Period size: 40 Copynumber: 3.4 Consensus size: 39
37863127 AATTATCGTC
* *
37863137 TGAATTCACATACGTACCCCTATTTGTACTTTCGTACCCT
1 TGAATGCACATACGTACCCCTGTTTGTAC-TTCGTACCCT
* *
37863177 TAAATGCACATACGTGCCCCTGTTTGTACTTCGATACCCT
1 TGAATGCACATACGTACCCCTGTTTGTACTTCG-TACCCT
37863217 TGAATGCACATACGTACCCCTGTTTGTACTTCGGTACCCT
1 TGAATGCACATACGTACCCCTGTTTGTACTTC-GTACCCT
37863257 TGAATGCACATACGT
1 TGAATGCACATACGT
37863272 GTAGCTATTA
Statistics
Matches: 87, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
39 4 0.05
40 82 0.94
41 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.33
Consensus pattern (39 bp):
TGAATGCACATACGTACCCCTGTTTGTACTTCGTACCCT
Found at i:37863253 original size:20 final size:20
Alignment explanation
Indices: 37863193--37863255 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
37863183 CACATACGTG
*
37863193 CCCCTGTTTGTACTTCGATA
1 CCCCTGTTTGTACTTCGGTA
* ** * *
37863213 CCCTTGAATGCACATAC-GTA
1 CCCCTGTTTGTAC-TTCGGTA
37863233 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
37863253 CCC
1 CCC
37863256 TTGAATGCAC
Statistics
Matches: 30, Mismatches: 11, Indels: 4
0.67 0.24 0.09
Matches are distributed among these distances:
19 2 0.07
20 26 0.87
21 2 0.07
ACGTcount: A:0.17, C:0.33, G:0.16, T:0.33
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCGGTA
Found at i:37863286 original size:80 final size:80
Alignment explanation
Indices: 37863137--37863287 Score: 214
Period size: 80 Copynumber: 1.9 Consensus size: 80
37863127 AATTATCGTC
* * * *
37863137 TGAATTCACATACGTACCCCTATTTGTACTTTCGTACCCTTAAATGCACATACGTGCCCCTGTTT
1 TGAATGCACATACGTACCCCTATTTGTACTTTCGTACCCTTAAATGCACATACGTGCACCTATTA
37863202 GTACTTCGATACCCT
66 GTACTTCGATACCCT
* * * *
37863217 TGAATGCACATACGTACCCCTGTTTGTAC-TTCGGTACCCTTGAATGCACATACGTGTAGCTATT
1 TGAATGCACATACGTACCCCTATTTGTACTTTC-GTACCCTTAAATGCACATACGTGCACCTATT
37863281 AGTACTT
65 AGTACTT
37863288 TGGCAACCCT
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.15, T:0.34
Consensus pattern (80 bp):
TGAATGCACATACGTACCCCTATTTGTACTTTCGTACCCTTAAATGCACATACGTGCACCTATTA
GTACTTCGATACCCT
Found at i:37865313 original size:12 final size:12
Alignment explanation
Indices: 37865294--37865324 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
37865284 ATGTCATGGG
37865294 AAAATGAGTGAC
1 AAAATGAGTGAC
*
37865306 AGAATGAGTGAC
1 AAAATGAGTGAC
37865318 AAAATGA
1 AAAATGA
37865325 TCAGATGTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.52, C:0.06, G:0.26, T:0.16
Consensus pattern (12 bp):
AAAATGAGTGAC
Found at i:37868039 original size:43 final size:43
Alignment explanation
Indices: 37867880--37868043 Score: 128
Period size: 43 Copynumber: 3.8 Consensus size: 43
37867870 ACATAGGATC
* *
37867880 CGATATGTGTTTTCATGTAAGACCACATCTGGGAC-GTTGGCAT
1 CGATATTTGTTTACATGTAAGACCACATCTGGGACAG-TGGCAT
* * * *
37867923 CGACT-TATGGTTTACGTGTAAGACCATC-TCT-AGATA-TCGGCAT
1 CGA-TAT-TTGTTTACATGTAAGACCA-CATCTGGGACAGT-GGCAT
**
37867966 CG-TATTTGATTT-TGTGTAAGACC-CTATCTGGGACAGTGGCAT
1 CGATATTTG-TTTACATGTAAGACCAC-ATCTGGGACAGTGGCAT
*
37868008 CGATATTTGTTTACATGTAAGACCACGTCTGGGACA
1 CGATATTTGTTTACATGTAAGACCACATCTGGGACA
37868044 TTGACATTGC
Statistics
Matches: 94, Mismatches: 13, Indels: 28
0.70 0.10 0.21
Matches are distributed among these distances:
39 1 0.01
41 16 0.17
42 18 0.19
43 38 0.40
44 20 0.21
45 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (43 bp):
CGATATTTGTTTACATGTAAGACCACATCTGGGACAGTGGCAT
Found at i:37870535 original size:15 final size:15
Alignment explanation
Indices: 37870515--37870553 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
37870505 TTGTATTCAT
37870515 TATTCTTCTGAGATG
1 TATTCTTCTGAGATG
37870530 TATTCTTCTGAGATG
1 TATTCTTCTGAGATG
*
37870545 TTTTCTTCT
1 TATTCTTCT
37870554 ATAATTATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.54
Consensus pattern (15 bp):
TATTCTTCTGAGATG
Found at i:37879475 original size:101 final size:99
Alignment explanation
Indices: 37879296--37879537 Score: 254
Period size: 99 Copynumber: 2.4 Consensus size: 99
37879286 TATTGTGAGG
* ** *
37879296 TCACGTGTGTAGTACTAAGTGCAGCTACTACGTGTACCGGATAATTGGTCGTATGTGTAGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTA
37879361 AGTGCAGGCTACTATGCGTACCCGATAACTTCAA
66 AGTGCAGGCTACTATGCGTACCCGATAACTTCAA
* * ** *
37879395 TCACGTGTGTAGTACTAAGTGCGGACTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAG-CTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTAC
* * * * * **
37879460 TACGTGCAGGCTACTACGTGTATCGGATAA-TT-GG
64 TAAGTGCAGGCTACTATGCGTACCCGATAACTTCAA
*** * *
37879494 TCGTATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TCACGTGTGTAGTACTAAGTGCA-GCTACTACGTGTACCAGATA
37879538 GCTTTGGCTA
Statistics
Matches: 116, Mismatches: 24, Indels: 6
0.79 0.16 0.04
Matches are distributed among these distances:
99 57 0.49
100 21 0.18
101 38 0.33
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (99 bp):
TCACGTGTGTAGTACTAAGTGCAGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTA
AGTGCAGGCTACTATGCGTACCCGATAACTTCAA
Found at i:37879516 original size:49 final size:50
Alignment explanation
Indices: 37879293--37879524 Score: 240
Period size: 49 Copynumber: 4.7 Consensus size: 50
37879283 ATCTATTGTG
*
37879293 AGGTCACGTGTGTAGTACTAAGTGCA-GCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
** * * * *
37879342 -GGTCGTATGTGTAGTAGTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * **
37879392 CA-ATCACGTGTGTAGTACTAAGTGC-GGACTACTACGTGTATCAGATGGTT
1 -AGGTCACATGTGTAGTACTAAGTGCAGG-CTACTACGTGTACCGGATAATT
* * *
37879442 AGGTCACGTGTGTAGTACTACGTGCAGGCTACTACGTGTATCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
**
37879492 -GGTCGTATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
37879525 TGCGTACCAG
Statistics
Matches: 149, Mismatches: 27, Indels: 14
0.78 0.14 0.07
Matches are distributed among these distances:
48 21 0.14
49 48 0.32
50 46 0.31
51 34 0.23
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:37889343 original size:37 final size:37
Alignment explanation
Indices: 37889275--37889426 Score: 223
Period size: 37 Copynumber: 4.1 Consensus size: 37
37889265 ACCTTTATCT
* * * *
37889275 CGGACGAAATCTCCACACGAAGTTATTGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
*
37889312 TGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
37889349 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* * * *
37889386 CGGACATACTCTCCACACGTAGTCATTGGGTCTCACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
37889423 CGGA
1 CGGA
37889427 ATATATTTCC
Statistics
Matches: 105, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.26, C:0.31, G:0.20, T:0.23
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:37889641 original size:47 final size:47
Alignment explanation
Indices: 37889589--37889727 Score: 206
Period size: 47 Copynumber: 3.0 Consensus size: 47
37889579 TTTCACACTA
* * * *
37889589 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
37889636 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
**
37889683 GCCATTCGGCCTTATCACATATATGCACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
37889728 AAAATCCTAA
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 82 1.00
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:37893768 original size:40 final size:40
Alignment explanation
Indices: 37893736--37894286 Score: 816
Period size: 40 Copynumber: 13.8 Consensus size: 40
37893726 CCAGCATGAT
* * * *
37893736 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
37893776 TGCTCTTCGGAACTTAGCACGAATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
37893816 TGCTCTTCGGGACTTAGTCCGAATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
37893856 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
37893896 TGCTCTTCGGGACTTAGTCCGAATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
37893936 TGCTCTTCGGGATTTAGCCCGGATATATCACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
37893976 TGCTCTTCGTGATTTAGCCCGGATATATCACTAGCAGGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
37894016 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
37894056 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
37894096 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
37894136 TGCTCTTCGGGATTTAGCCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
37894176 TGCTCTTCGGGA-TTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
37894215 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
37894255 TGCTCTCCGGGATTTAGCCCGGACATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
37894287 TTCAATTCTC
Statistics
Matches: 472, Mismatches: 38, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
39 37 0.08
40 435 0.92
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:37895598 original size:37 final size:37
Alignment explanation
Indices: 37895548--37895699 Score: 250
Period size: 37 Copynumber: 4.1 Consensus size: 37
37895538 ACCTTTAGCT
* * *
37895548 CGGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
37895585 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
37895622 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* * *
37895659 CGGACATACTCTCCACACGTAGTCATCGGGTCTCACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
37895696 CGGA
1 CGGA
37895700 ATATATTTCC
Statistics
Matches: 109, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 109 1.00
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Done.