Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 117 of 333
Found at i:37895914 original size:47 final size:47
Alignment explanation
Indices: 37895862--37896329 Score: 711
Period size: 47 Copynumber: 10.0 Consensus size: 47
37895852 TTTCACACTA
* * * * * *
37895862 GCCATTCGACTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
37895909 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
37895956 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
37896003 GCCATTCGGCCTCATCACATATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * *
37896050 GCCATTCGGCCTCATCACATATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * *
37896097 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* *
37896144 GCCACTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * * *
37896191 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
37896238 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* ***
37896285 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACAT
37896330 AAAATCCTAA
Statistics
Matches: 385, Mismatches: 36, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 385 1.00
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
Found at i:37896020 original size:22 final size:22
Alignment explanation
Indices: 37895992--37896069 Score: 70
Period size: 22 Copynumber: 3.4 Consensus size: 22
37895982 ATGCTCACAT
37895992 TCATCACATTGGCCATTCGGCC
1 TCATCACATTGGCCATTCGGCC
* * *
37896014 TCATCACATATATG-CATGCTC-ACAT
1 TCATCACAT-T-GGCCAT--TCGGC-C
37896039 TCATCACATTGGCCATTCGGCC
1 TCATCACATTGGCCATTCGGCC
37896061 TCATCACAT
1 TCATCACAT
37896070 ATATGCATGT
Statistics
Matches: 43, Mismatches: 6, Indels: 14
0.68 0.10 0.22
Matches are distributed among these distances:
22 20 0.47
23 6 0.14
24 6 0.14
25 11 0.26
ACGTcount: A:0.24, C:0.33, G:0.13, T:0.29
Consensus pattern (22 bp):
TCATCACATTGGCCATTCGGCC
Found at i:37896089 original size:25 final size:25
Alignment explanation
Indices: 37895969--37896095 Score: 76
Period size: 25 Copynumber: 5.3 Consensus size: 25
37895959 ATTCGGCCTT
*
37895969 ATCACATATATGCATGCTCACATTC
1 ATCACATATATGCATGTTCACATTC
* * *
37895994 ATCACAT-T-GGCCA--TTCGGC-CTC
1 ATCACATATATG-CATGTTC-ACATTC
*
37896016 ATCACATATATGCATGCTCACATTC
1 ATCACATATATGCATGTTCACATTC
* * *
37896041 ATCACAT-T-GGCCA--TTCGGC-CTC
1 ATCACATATATG-CATGTTC-ACATTC
37896063 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCATGTTCACATTC
37896088 ATCACATA
1 ATCACATA
37896096 GGCCATTCGG
Statistics
Matches: 73, Mismatches: 15, Indels: 28
0.63 0.13 0.24
Matches are distributed among these distances:
22 22 0.30
23 10 0.14
24 10 0.14
25 31 0.42
ACGTcount: A:0.28, C:0.30, G:0.11, T:0.31
Consensus pattern (25 bp):
ATCACATATATGCATGTTCACATTC
Found at i:37899334 original size:28 final size:28
Alignment explanation
Indices: 37899294--37899357 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
37899284 TGTACTAGAG
*
37899294 TACCCCTATGTATGAAAAATTACCAT-TA
1 TACCCCTATGTATGAAAAATGACC-TCTA
*
37899322 TACCCCTATGTATGCAAAATGACCTCTA
1 TACCCCTATGTATGAAAAATGACCTCTA
37899350 TACCCCTA
1 TACCCCTA
37899358 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 1 0.03
28 32 0.97
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.30
Consensus pattern (28 bp):
TACCCCTATGTATGAAAAATGACCTCTA
Found at i:37899504 original size:28 final size:27
Alignment explanation
Indices: 37899463--37899544 Score: 94
Period size: 28 Copynumber: 3.0 Consensus size: 27
37899453 AGGAAGCGAC
37899463 CTGGTGGCTA-TGCCACGAATTATCTGTT
1 CTGGTGGC-ACTGCCACGAA-TATCTGTT
* * *
37899491 CTGGTGGCCCTGCCACGTATATCTATT
1 CTGGTGGCACTGCCACGAATATCTGTT
*
37899518 CTGGTGGCACTGCCACAAAATATCTGT
1 CTGGTGGCACTGCCAC-GAATATCTGT
37899545 ATCTAGTGAC
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
27 22 0.49
28 23 0.51
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACGAATATCTGTT
Found at i:37899521 original size:27 final size:28
Alignment explanation
Indices: 37899463--37899542 Score: 92
Period size: 27 Copynumber: 2.9 Consensus size: 28
37899453 AGGAAGCGAC
*
37899463 CTGGTGGCTA-TGCCACGAATTATCTGTT
1 CTGGTGGC-ACTGCCACGAATTATCTATT
* *
37899491 CTGGTGGCCCTGCCACGTA-TATCTATT
1 CTGGTGGCACTGCCACGAATTATCTATT
* *
37899518 CTGGTGGCACTGCCACAAAATATCT
1 CTGGTGGCACTGCCACGAATTATCT
37899543 GTATCTAGTG
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
27 23 0.52
28 21 0.48
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (28 bp):
CTGGTGGCACTGCCACGAATTATCTATT
Found at i:37900665 original size:11 final size:10
Alignment explanation
Indices: 37900637--37900670 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
37900627 AGCCTATAAG
37900637 TATTCTGAAT
1 TATTCTGAAT
*
37900647 TTTTCTGAAT
1 TATTCTGAAT
37900657 ATATTCTGAAT
1 -TATTCTGAAT
37900668 TAT
1 TAT
37900671 CTGTCTATAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:37907196 original size:28 final size:28
Alignment explanation
Indices: 37907156--37907219 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
37907146 TGTACTAGAG
*
37907156 TACCCCTATGTATGCAAAATTACCAT-TA
1 TACCCCTATGTATGCAAAATGACC-TCTA
37907184 TACCCCTATGTATGCAAAATGACCTCTA
1 TACCCCTATGTATGCAAAATGACCTCTA
37907212 TACCCCTA
1 TACCCCTA
37907220 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.33, C:0.30, G:0.08, T:0.30
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATGACCTCTA
Found at i:37907383 original size:27 final size:28
Alignment explanation
Indices: 37907325--37907414 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
37907315 AGGAATCGTC
*
37907325 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
37907353 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
37907380 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
37907409 CTGGTG
1 CTGGTG
37907415 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:37907425 original size:29 final size:28
Alignment explanation
Indices: 37907335--37907425 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
37907325 CTGGTGGCTA
* * *
37907335 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
37907363 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
37907390 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
37907419 TGTCACA
1 TGCCACA
37907426 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:37907433 original size:55 final size:56
Alignment explanation
Indices: 37907325--37907439 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
37907315 AGGAATCGTC
* * *
37907325 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
37907380 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
37907436 CTGG
1 CTGG
37907440 CAGTCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:37910092 original size:45 final size:47
Alignment explanation
Indices: 37910026--37910117 Score: 134
Period size: 45 Copynumber: 2.0 Consensus size: 47
37910016 GTGAGCTCTA
* *
37910026 TTGAGCTAAAAATGGTAAGCTCTATTGAGCTG-AATAGTAAGATCTT
1 TTGAGCTAAAAATGGTAAGCTCCAATGAGCTGAAATAGTAAGATCTT
* *
37910072 TTGAGCT-AAATTGGTAAGCTCCAATGAGCTGAAATAGTAAGCTCTT
1 TTGAGCTAAAAATGGTAAGCTCCAATGAGCTGAAATAGTAAGATCTT
37910118 ACGAGCTGTA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
45 21 0.51
46 20 0.49
ACGTcount: A:0.34, C:0.13, G:0.22, T:0.32
Consensus pattern (47 bp):
TTGAGCTAAAAATGGTAAGCTCCAATGAGCTGAAATAGTAAGATCTT
Found at i:37910123 original size:23 final size:23
Alignment explanation
Indices: 37910035--37910125 Score: 80
Period size: 23 Copynumber: 4.0 Consensus size: 23
37910025 ATTGAGCTAA
*
37910035 AAATGGTAAGCTC-TATTGAGCTG
1 AAATAGTAAGCTCTTA-TGAGCTG
* *
37910058 -AATAGTAAGATCTTTTGAGCT-
1 AAATAGTAAGCTCTTATGAGCTG
* **
37910079 AAATTGGTAAGCTCCAATGAGCTG
1 AAA-TAGTAAGCTCTTATGAGCTG
*
37910103 AAATAGTAAGCTCTTACGAGCTG
1 AAATAGTAAGCTCTTATGAGCTG
37910126 TAGTGAGCTC
Statistics
Matches: 52, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
22 18 0.35
23 31 0.60
24 3 0.06
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (23 bp):
AAATAGTAAGCTCTTATGAGCTG
Found at i:37910124 original size:46 final size:46
Alignment explanation
Indices: 37910028--37910124 Score: 124
Period size: 46 Copynumber: 2.1 Consensus size: 46
37910018 GAGCTCTATT
* * **
37910028 GAGCTAAAAATGGTAAGCTCTATTGAGCTGAATAGTAAGATCTTTT
1 GAGCTAAAAATGGTAAGCTCCAATGAGCTGAATAGTAAGATCTTAC
* *
37910074 GAGCT-AAATTGGTAAGCTCCAATGAGCTGAAATAGTAAGCTCTTAC
1 GAGCTAAAAATGGTAAGCTCCAATGAGCTG-AATAGTAAGATCTTAC
37910120 GAGCT
1 GAGCT
37910125 GTAGTGAGCT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
45 21 0.48
46 23 0.52
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (46 bp):
GAGCTAAAAATGGTAAGCTCCAATGAGCTGAATAGTAAGATCTTAC
Found at i:37916751 original size:53 final size:52
Alignment explanation
Indices: 37916597--37916797 Score: 172
Period size: 53 Copynumber: 3.8 Consensus size: 52
37916587 AGGGTTTAAG
* * * ** * *
37916597 GATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGTAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TACATAAGG-AAA
* * * * *
37916651 GAAATCATGTAAGACCATGTCAAGACATGGC--TGATAAACTACGATAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTAC-ATAAGG-AAA
* * *
37916704 GATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTACATAAGGAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTACATAAGGAAA
* * *
37916756 GGATACAAGGTAAGACCATGTCAAGACATGGCAATGGTAAGT
1 -GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGT
37916798 TTAAAAAGGA
Statistics
Matches: 116, Mismatches: 26, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
52 7 0.06
53 76 0.66
54 30 0.26
55 3 0.03
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.19
Consensus pattern (52 bp):
GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTACATAAGGAAA
Found at i:37926930 original size:23 final size:23
Alignment explanation
Indices: 37926901--37926946 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
37926891 TGCATAATCA
37926901 AATAATCCCAGAAAAGTCTTACT
1 AATAATCCCAGAAAAGTCTTACT
37926924 AATAATCCCAGAAAAGTCTTACT
1 AATAATCCCAGAAAAGTCTTACT
37926947 CGGCTGGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.22, G:0.09, T:0.26
Consensus pattern (23 bp):
AATAATCCCAGAAAAGTCTTACT
Found at i:37929001 original size:46 final size:46
Alignment explanation
Indices: 37928951--37929126 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 46
37928941 TGTTTGGGCA
*
37928951 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *** * * ** *
37928997 TCCGAACTCATTAAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* *
37929044 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
37929090 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37929127 GCAGGTTACA
Statistics
Matches: 102, Mismatches: 25, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
46 69 0.68
47 33 0.32
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:37929107 original size:93 final size:93
Alignment explanation
Indices: 37928947--37929118 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
37928937 AGGATGTTTG
* *
37928947 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCATTAAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTAAG
37929012 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * * *
37929040 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTAAG
*
37929105 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
37929119 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTAAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:37934419 original size:44 final size:43
Alignment explanation
Indices: 37934275--37934459 Score: 171
Period size: 44 Copynumber: 4.3 Consensus size: 43
37934265 AGTTCATACA
* * * * * *
37934275 ATGCCAATGTCCCAGACGTGGTCTTACATGT-AATCAAACATTG
1 ATGCCAACGTCCTAGACATGGTCTTACACGTAAAACAAA-ATCG
* * * *
37934318 ATGCC-ACTATCCTAGACAGGGCCTTACACG-AAAAC-ATATACG
1 ATGCCAAC-GTCCTAGACATGGTCTTACACGTAAAACAAAAT-CG
* *
37934360 ATGCCGATGTCCTAGACATGGTCTTACACGTAAAACAAAAGTCG
1 ATGCCAACGTCCTAGACATGGTCTTACACGTAAAACAAAA-TCG
* *
37934404 ATGCCAACGTCCTAGACGTGGTCTTACACGTAAAACAGAAGTCG
1 ATGCCAACGTCCTAGACATGGTCTTACACGTAAAACA-AAATCG
37934448 ATGCCAACGTCC
1 ATGCCAACGTCC
37934460 CAAATGTGCT
Statistics
Matches: 115, Mismatches: 19, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
41 2 0.02
42 27 0.23
43 30 0.26
44 53 0.46
45 3 0.03
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.22
Consensus pattern (43 bp):
ATGCCAACGTCCTAGACATGGTCTTACACGTAAAACAAAATCG
Found at i:37934473 original size:44 final size:44
Alignment explanation
Indices: 37934381--37934476 Score: 147
Period size: 44 Copynumber: 2.2 Consensus size: 44
37934371 CTAGACATGG
* * *
37934381 TCTTACACGTAAAACAAAAGTCGATGCCAACGTCCTAGACGTGG
1 TCTTACACGTAAAACAAAAGTCGATGCCAACGTCCCAAACGTGC
* *
37934425 TCTTACACGTAAAACAGAAGTCGATGCCAACGTCCCAAATGTGC
1 TCTTACACGTAAAACAAAAGTCGATGCCAACGTCCCAAACGTGC
37934469 TCTTACAC
1 TCTTACAC
37934477 AAAATCACAT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (44 bp):
TCTTACACGTAAAACAAAAGTCGATGCCAACGTCCCAAACGTGC
Found at i:37935957 original size:54 final size:53
Alignment explanation
Indices: 37935884--37936045 Score: 222
Period size: 54 Copynumber: 3.1 Consensus size: 53
37935874 CACATAGTAC
37935884 CACACATGTGATCGAAGCTATCGGGTACGCATAGTAGCCTACACTTAGTACTA
1 CACACATGTGATCGAAGCTATCGGGTACGCATAGTAGCCTACACTTAGTACTA
37935937 CCACACATGTGATCGAAGCTATCGGGTACGCATAGTAGCCTACACTTAGTACT-
1 -CACACATGTGATCGAAGCTATCGGGTACGCATAGTAGCCTACACTTAGTACTA
* * * * * * * *
37935990 -ACACATGCGACCCAA-CCATCTGGTACACGTAGTAGCCTGCACTTAGTACTA
1 CACACATGTGATCGAAGCTATCGGGTACGCATAGTAGCCTACACTTAGTACTA
37936041 CACAC
1 CACAC
37936046 GTGACCTATA
Statistics
Matches: 98, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
50 30 0.31
51 12 0.12
52 4 0.04
54 52 0.53
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (53 bp):
CACACATGTGATCGAAGCTATCGGGTACGCATAGTAGCCTACACTTAGTACTA
Found at i:37936036 original size:50 final size:51
Alignment explanation
Indices: 37935869--37936100 Score: 205
Period size: 54 Copynumber: 4.5 Consensus size: 51
37935859 ATGGTCGGTG
* * * * *
37935869 GCCTGCACATAGTACCACACATGTGATCGAAGCTATCGGGTACGCATAGTA
1 GCCTGCACTTAGTACTACACATGTGACCGAAGCCATCGGGTACACATAGTA
* * * *
37935920 GCCTACACTTAGTACTACCACACATGTGATCGAAGCTATCGGGTACGCATAGTA
1 GCCTGCACTTAGTACT---ACACATGTGACCGAAGCCATCGGGTACACATAGTA
* * * * *
37935974 GCCTACACTTAGTACTACACATGCGACCCAA-CCATCTGGTACACGTAGTA
1 GCCTGCACTTAGTACTACACATGTGACCGAAGCCATCGGGTACACATAGTA
* * * ***** *
37936024 GCCTGCACTTAGTACTACACACGTGACCTATAACCATTTTAAACAAATAGTA
1 GCCTGCACTTAGTACTACACATGTGACCGA-AGCCATCGGGTACACATAGTA
*
37936076 GCCTGCACATAGTACTACACATGTG
1 GCCTGCACTTAGTACTACACATGTG
37936101 TTCTCACAAT
Statistics
Matches: 154, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
50 41 0.27
51 26 0.17
52 36 0.23
54 51 0.33
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (51 bp):
GCCTGCACTTAGTACTACACATGTGACCGAAGCCATCGGGTACACATAGTA
Found at i:37956994 original size:42 final size:43
Alignment explanation
Indices: 37956920--37957010 Score: 130
Period size: 42 Copynumber: 2.1 Consensus size: 43
37956910 CAGATATGGC
* * * *
37956920 CTTATATGTAATCAAATATCGATGCCACTGTCCCAGGCAGGGT
1 CTTACATGAAATCAAATATCGATGCCAATGTCCCAGACAGGGT
*
37956963 CTTACATGAAATCAAATA-CGATGCCAATGTCCCAGACATGGT
1 CTTACATGAAATCAAATATCGATGCCAATGTCCCAGACAGGGT
37957005 CTTACA
1 CTTACA
37957011 CATAAATCAT
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 27 0.63
43 16 0.37
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (43 bp):
CTTACATGAAATCAAATATCGATGCCAATGTCCCAGACAGGGT
Found at i:37958240 original size:27 final size:27
Alignment explanation
Indices: 37958210--37958343 Score: 171
Period size: 27 Copynumber: 5.0 Consensus size: 27
37958200 CGATTTACAA
* *
37958210 AATTATTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
37958237 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
37958264 AATTA-TCAAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
37958291 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
37958318 AATTACCGAGATACCCTTGTGGGGTA
1 AATTACTGAAATACCCCTGTAGGGTA
37958344 AGATTTCCAT
Statistics
Matches: 93, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
26 1 0.01
27 91 0.98
28 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:37958332 original size:54 final size:54
Alignment explanation
Indices: 37958218--37958343 Score: 189
Period size: 54 Copynumber: 2.3 Consensus size: 54
37958208 AAAATTATTG
* * * *
37958218 AAATACCCCTATAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATCA
1 AAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACCA
*
37958272 AAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACCA
* *
37958326 AGATACCCTTGTGGGGTA
1 AAATACCCTTGTAGGGTA
37958344 AGATTTCCAT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.25
Consensus pattern (54 bp):
AAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACCA
Found at i:37958724 original size:20 final size:20
Alignment explanation
Indices: 37958707--37958746 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
37958697 CGAAGGCTGT
*
37958707 GTGCTGTTATTGTGGGCTTC
1 GTGCTGATATTGTGGGCTTC
*
37958727 GTGTTGATATTGTGGGCTTC
1 GTGCTGATATTGTGGGCTTC
37958747 ATGCCGATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.07, C:0.12, G:0.35, T:0.45
Consensus pattern (20 bp):
GTGCTGATATTGTGGGCTTC
Found at i:37958979 original size:6 final size:6
Alignment explanation
Indices: 37958970--37959095 Score: 123
Period size: 6 Copynumber: 20.7 Consensus size: 6
37958960 ATTCACATTT
* *
37958970 TGATTC TGATTC TG-TTACC TGATGC TGATTC TAATTC TGATTC TGATTC
1 TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC TGATTC TGATTC
* * *
37959019 TGATTC TGATTC TGATTT TGATTT TGATTC TG-TCACC TGATTC TGATTC
1 TGATTC TGATTC TGATTC TGATTC TGATTC TGAT--TC TGATTC TGATTC
* *
37959068 TGATTC TCATTT TGATTC T-AGTTC TGAT
1 TGATTC TGATTC TGATTC TGA-TTC TGAT
37959096 AATGTTTCTT
Statistics
Matches: 100, Mismatches: 12, Indels: 16
0.78 0.09 0.12
Matches are distributed among these distances:
5 4 0.04
6 87 0.87
7 7 0.07
8 2 0.02
ACGTcount: A:0.17, C:0.17, G:0.16, T:0.50
Consensus pattern (6 bp):
TGATTC
Found at i:37959074 original size:67 final size:67
Alignment explanation
Indices: 37958966--37959095 Score: 190
Period size: 67 Copynumber: 1.9 Consensus size: 67
37958956 TTGCATTCAC
* *
37958966 ATTTTGATTCTGATTCTGTTACCTGATGCTGATTCTAATTCTGATTCTGATTCT-GATTCTGATT
1 ATTTTGATTCTGATTCTGTCACCTGATGCTGATTCTAATTCTCATTCTGATTCTAG-TTCTGATT
37959030 CTG
65 CTG
* * * *
37959033 ATTTTGATTTTGATTCTGTCACCTGATTCTGATTCTGATTCTCATTTTGATTCTAGTTCTGAT
1 ATTTTGATTCTGATTCTGTCACCTGATGCTGATTCTAATTCTCATTCTGATTCTAGTTCTGAT
37959096 AATGTTTCTT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
67 55 0.98
68 1 0.02
ACGTcount: A:0.18, C:0.16, G:0.15, T:0.51
Consensus pattern (67 bp):
ATTTTGATTCTGATTCTGTCACCTGATGCTGATTCTAATTCTCATTCTGATTCTAGTTCTGATTC
TG
Found at i:37959093 original size:43 final size:43
Alignment explanation
Indices: 37959012--37959093 Score: 130
Period size: 43 Copynumber: 1.9 Consensus size: 43
37959002 AATTCTGATT
* *
37959012 CTGATTCTGATTCTGATTCTGATTTTGATTTTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTCATTTTGATTTAGATTCTGTCAC
37959055 CTGATTCTGATTCTGATTCTCATTTTGATTCTAG-TTCTG
1 CTGATTCTGATTCTGATTCTCATTTTGATT-TAGATTCTG
37959094 ATAATGTTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
43 34 0.94
44 2 0.06
ACGTcount: A:0.16, C:0.17, G:0.16, T:0.51
Consensus pattern (43 bp):
CTGATTCTGATTCTGATTCTCATTTTGATTTAGATTCTGTCAC
Found at i:37960306 original size:6 final size:6
Alignment explanation
Indices: 37960270--37960394 Score: 78
Period size: 6 Copynumber: 20.3 Consensus size: 6
37960260 AAGAAAAATT
* * * *
37960270 ATCAGA A-CTAGA ATCAAA ATGAGA TTCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * *
37960319 ATCAGA ATCAGA ATTAGA ATCAGA CTTAGGTG AT-AGA ATCAGA ATCAGT
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
37960368 ATCAAGTA A-CAGA ATCAGA ATCAGA AT
1 ATC-AG-A ATCAGA ATCAGA ATCAGA AT
37960395 GTGAATGCAA
Statistics
Matches: 91, Mismatches: 17, Indels: 22
0.70 0.13 0.17
Matches are distributed among these distances:
5 6 0.07
6 73 0.80
7 9 0.10
8 3 0.03
ACGTcount: A:0.46, C:0.14, G:0.19, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:37960320 original size:19 final size:19
Alignment explanation
Indices: 37960296--37960366 Score: 74
Period size: 19 Copynumber: 3.8 Consensus size: 19
37960286 AAATGAGATT
37960296 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGGTGA
*
37960315 CAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGGTGA
* * *
37960332 TTAGAATCAGACTTAGGTGA
1 -CAGAATCAGAATCAGGTGA
*
37960352 TAGAATCAGAATCAG
1 CAGAATCAGAATCAG
37960367 TATCAAGTAA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
17 1 0.02
18 12 0.29
19 28 0.67
20 1 0.02
ACGTcount: A:0.44, C:0.14, G:0.23, T:0.20
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTGA
Found at i:37960320 original size:37 final size:37
Alignment explanation
Indices: 37960279--37960366 Score: 106
Period size: 37 Copynumber: 2.4 Consensus size: 37
37960269 TATCAGAACT
*
37960279 AGAATCAAAATGAG-ATTCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATT-AGAATCAGAATCAGGTGAC
* * * *
37960316 AGAATCAGAATCAGAATTAGAATCAGACTTAGGTGAT
1 AGAATCAAAATCAGAATTAGAATCAGAATCAGGTGAC
*
37960353 AGAATCAGAATCAG
1 AGAATCAAAATCAG
37960367 TATCAAGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
37 42 0.93
38 3 0.07
ACGTcount: A:0.45, C:0.12, G:0.22, T:0.20
Consensus pattern (37 bp):
AGAATCAAAATCAGAATTAGAATCAGAATCAGGTGAC
Found at i:37960332 original size:31 final size:31
Alignment explanation
Indices: 37960295--37960394 Score: 96
Period size: 31 Copynumber: 3.2 Consensus size: 31
37960285 AAAATGAGAT
*
37960295 TCAGAATCAGAATCAGGTGACAGAATCAGAA
1 TCAGAATCAGAATCAGGTAACAGAATCAGAA
* * * * *
37960326 TCAGAATTAGAATCAGACTTA-GGTGAT-AGAA
1 TCAGAATCAGAATCAG-GTAACAG-AATCAGAA
* *
37960357 TCAGAATCAGTATCAAGTAACAGAATCAGAA
1 TCAGAATCAGAATCAGGTAACAGAATCAGAA
37960388 TCAGAAT
1 TCAGAAT
37960395 GTGAATGCAA
Statistics
Matches: 53, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
30 4 0.08
31 45 0.85
32 4 0.08
ACGTcount: A:0.45, C:0.14, G:0.20, T:0.21
Consensus pattern (31 bp):
TCAGAATCAGAATCAGGTAACAGAATCAGAA
Found at i:37960692 original size:22 final size:22
Alignment explanation
Indices: 37960658--37960720 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
37960648 CCACAATAAC
37960658 GGCACACAA-CCATAATCAGGTT
1 GGCACA-AAGCCATAATCAGGTT
* *
37960680 GGTACAAAGCCAT-ATGTAGGTT
1 GGCACAAAGCCATAAT-CAGGTT
*
37960702 GGCGCAAAGCCATAATCAG
1 GGCACAAAGCCATAATCAG
37960721 AATAATTGGC
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
21 4 0.12
22 27 0.82
23 2 0.06
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (22 bp):
GGCACAAAGCCATAATCAGGTT
Found at i:37961296 original size:27 final size:27
Alignment explanation
Indices: 37961233--37961534 Score: 367
Period size: 27 Copynumber: 11.2 Consensus size: 27
37961223 GGGCAAAATG
* * *
37961233 GTAATTTTACCCCACAAGGGTATCTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
* ** *
37961259 GTAATTCTACCCTATAAATGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
37961286 GTATTTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
*
37961312 GATAATTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAAGGGTATTTCA
* *
37961340 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCA
* ** *
37961367 GTATTTCTAGTCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
37961394 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
37961421 ATAACTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
37961448 GTATTTCTACCCTACAAGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
*
37961474 GATAATTCTACCCTACAATGGTATTTCA
1 G-TAATTCTACCCTACAAGGGTATTTCA
*
37961502 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
37961529 ATAATT
1 GTAATT
37961535 TTGCAAATCG
Statistics
Matches: 236, Mismatches: 35, Indels: 9
0.84 0.12 0.03
Matches are distributed among these distances:
26 22 0.09
27 212 0.90
28 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:37961363 original size:81 final size:81
Alignment explanation
Indices: 37961234--37961528 Score: 439
Period size: 81 Copynumber: 3.7 Consensus size: 81
37961224 GGCAAAATGG
* * * * *** *
37961234 TAATTTTACCCCACAAGGGTATCTC-GTAATTCTACCCTATAAATGTATTTCGGTATTTCTACCC
1 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCC
37961298 TACAAGGGTATTTCGA
66 TACAAGGGTATTTCGA
* * **
37961314 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTAGTATTTCTAGTC
1 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCC
*
37961379 TACAAGGGTATTTCGG
66 TACAAGGGTATTTCGA
* *
37961395 TAATTCTACCCTACAAGGGTATTTCAATAACTCTACCCTACAGGGGTATTTCAGTATTTCTACCC
1 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCC
37961460 TACAAGGGTATTTCGA
66 TACAAGGGTATTTCGA
*
37961476 TAATTCTACCCTACAATGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
1 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
37961529 ATAATTTTGC
Statistics
Matches: 191, Mismatches: 23, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
80 21 0.11
81 170 0.89
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.36
Consensus pattern (81 bp):
TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTACCC
TACAAGGGTATTTCGA
Found at i:37965366 original size:44 final size:44
Alignment explanation
Indices: 37965285--37965376 Score: 103
Period size: 44 Copynumber: 2.1 Consensus size: 44
37965275 GTTGCTGTGA
* ** * * * **
37965285 TATTTACAGCCTTTAGCTTTCCTGTCTACGGCTTTGAGCTGTCC
1 TATTTACAGCATTTAGCCATCCTATCTACGACGTTGAGCCATCC
*
37965329 TATTTACAGCATTTAGCCATCCTATCTATGACGTTGAGCCATCC
1 TATTTACAGCATTTAGCCATCCTATCTACGACGTTGAGCCATCC
37965373 TATT
1 TATT
37965377 GACTTAGTGT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.20, C:0.26, G:0.15, T:0.39
Consensus pattern (44 bp):
TATTTACAGCATTTAGCCATCCTATCTACGACGTTGAGCCATCC
Found at i:37965465 original size:21 final size:21
Alignment explanation
Indices: 37965441--37965497 Score: 89
Period size: 21 Copynumber: 2.7 Consensus size: 21
37965431 TTATCCCACA
37965441 TGGTGTGTTGGTTGGTA-CAGG
1 TGGTGTGTTGGTTGGTATC-GG
*
37965462 TGGTATGTTGGTTGGTATCGG
1 TGGTGTGTTGGTTGGTATCGG
37965483 TGGTGTGTTGGTTGG
1 TGGTGTGTTGGTTGG
37965498 ACTGGGCTGG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
21 32 0.97
22 1 0.03
ACGTcount: A:0.07, C:0.04, G:0.47, T:0.42
Consensus pattern (21 bp):
TGGTGTGTTGGTTGGTATCGG
Found at i:37969195 original size:24 final size:23
Alignment explanation
Indices: 37969138--37969263 Score: 114
Period size: 23 Copynumber: 5.4 Consensus size: 23
37969128 GTCATGGTCG
*
37969138 GTAAGCTCT-TCTGAGCTGATAAATA
1 GTAAGCTCTAT-TGAGCT-A-AAACA
*
37969163 GTAAGCTCTATTGAGCTGAAAACG
1 GTAAGCTCTATTGAGCT-AAAACA
37969187 GTAAGCTCTATTGAGCT-AAACA
1 GTAAGCTCTATTGAGCTAAAACA
* * *
37969209 GTCAGCTCT-TTCGAGCTAAATCG
1 GTAAGCTCTATT-GAGCTAAAACA
* * *
37969232 GTAAGCTCCAATGAGCTAAAATA
1 GTAAGCTCTATTGAGCTAAAACA
37969255 GTAAGCTCT
1 GTAAGCTCT
37969264 TACGAGCTAC
Statistics
Matches: 84, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
21 2 0.02
22 17 0.20
23 26 0.31
24 21 0.25
25 17 0.20
26 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTAAAACA
Found at i:37969215 original size:22 final size:22
Alignment explanation
Indices: 37969157--37969263 Score: 99
Period size: 24 Copynumber: 4.7 Consensus size: 22
37969147 TCTGAGCTGA
*
37969157 TAAATAGTAAGCTCTATTGAGC
1 TAAACAGTAAGCTCTATTGAGC
*
37969179 TGAAAACGGTAAGCTCTATTGAGC
1 T--AAACAGTAAGCTCTATTGAGC
*
37969203 TAAACAGTCAGCTCT-TTCGAGC
1 TAAACAGTAAGCTCTATT-GAGC
* * *
37969225 TAAATCGGTAAGCTCCAATGAGC
1 TAAA-CAGTAAGCTCTATTGAGC
*
37969248 TAAAATAGTAAGCTCT
1 T-AAACAGTAAGCTCT
37969264 TACGAGCTAC
Statistics
Matches: 68, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
21 2 0.03
22 21 0.31
23 21 0.31
24 24 0.35
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.27
Consensus pattern (22 bp):
TAAACAGTAAGCTCTATTGAGC
Found at i:37969262 original size:46 final size:46
Alignment explanation
Indices: 37969135--37969272 Score: 154
Period size: 46 Copynumber: 3.0 Consensus size: 46
37969125 CAAGTCATGG
**
37969135 TCGGTAAGCTCTTCTGAGCTGATAAATAGTAAGCTCTATT-GAGCTGAAA
1 TCGGTAAGCTCTAATGAGCT-A-AAATAGTAAGCTCT-TTCGAGCT-AAA
* * * *
37969184 ACGGTAAGCTCTATTGAGCT-AAACAGTCAGCTCTTTCGAGCTAAA
1 TCGGTAAGCTCTAATGAGCTAAAATAGTAAGCTCTTTCGAGCTAAA
* *
37969229 TCGGTAAGCTCCAATGAGCTAAAATAGTAAGCTCTTACGAGCTA
1 TCGGTAAGCTCTAATGAGCTAAAATAGTAAGCTCTTTCGAGCTA
37969273 CGGTGAGTCT
Statistics
Matches: 76, Mismatches: 11, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
45 22 0.29
46 37 0.49
49 17 0.22
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.28
Consensus pattern (46 bp):
TCGGTAAGCTCTAATGAGCTAAAATAGTAAGCTCTTTCGAGCTAAA
Found at i:37970314 original size:101 final size:99
Alignment explanation
Indices: 37970180--37970367 Score: 259
Period size: 99 Copynumber: 1.9 Consensus size: 99
37970170 ATTGGTCGCA
* *
37970180 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAA-TT-GATCACATGTGTAGTACTAAG
* * * *
37970245 TGTAGGCTACTATGTGTATCAGATGGTTAAGTCACG
64 TGCAGGCTACCATGCGTACCAGATGGTTAAGTCACG
* * * * *
37970281 TGTGTAGTATTAAGTGCAGGCTACTACGGGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAATTGATCACATGTGTAGTACTAAGTG
37970346 CAGGCTACCATGCGTACCAGAT
66 CAGGCTACCATGCGTACCAGAT
37970368 AGATTTGGCT
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
99 38 0.50
100 2 0.03
101 36 0.47
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (99 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAATTGATCACATGTGTAGTACTAAGTG
CAGGCTACCATGCGTACCAGATGGTTAAGTCACG
Found at i:37970363 original size:49 final size:50
Alignment explanation
Indices: 37970123--37970368 Score: 237
Period size: 49 Copynumber: 4.9 Consensus size: 50
37970113 ATCTATTGTG
* * *** *
37970123 AGGTCACGTGTGTAGTACTAGGTGCAGGCTACTACATGTACCGGA-ATATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA-ATT
* *
37970173 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA-TT
* * * * * * **
37970223 CGATCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATT
* * * * * *
37970273 AAGTCACGTGTGTAGTATTAAGTGCAGGCTACTACGGGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATT
* *
37970323 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACCATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
37970369 GATTTGGCTA
Statistics
Matches: 158, Mismatches: 35, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
49 76 0.48
50 44 0.28
51 38 0.24
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATT
Found at i:37970398 original size:150 final size:150
Alignment explanation
Indices: 37970125--37970406 Score: 390
Period size: 150 Copynumber: 1.9 Consensus size: 150
37970115 CTATTGTGAG
* *
37970125 GTCACGTGTGTAGTACTAGGTGCAGGCTACTACATGTACCGGAATATTGGTCGCATGTGTAGTAC
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACAGGTACCGGAATATTGGTCGCATGTGTAGTAC
* * * * * *
37970190 TAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAGTGTAGGCTAC
66 TAAGTGCAGGCTACCATGCGTACCAGATAACTTCGATCAAGTGTGTAGAAATAAGTGTAGGCAAC
37970255 TATGTGTATCAGATGGTTAA
131 TATGTGTATCAGATGGTTAA
* *
37970275 GTCACGTGTGTAGTATTAAGTGCAGGCTACTACGGGTACCGG-ATAATTGGTCGCATGTGTAGTA
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACAGGTACCGGAAT-ATTGGTCGCATGTGTAGTA
* * * *
37970339 CTAAGTGCAGGCTACCATGCGTACCAGATAGATTTGGCTACAAGTGTG-A-AAATATGTGTAGGC
65 CTAAGTGCAGGCTACCATGCGTACCAGATA-ACTTCGAT-CAAGTGTGTAGAAATAAGTGTAGGC
37970402 AACTA
128 AACTA
37970407 AGTATCAGTT
Statistics
Matches: 115, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
149 2 0.02
150 100 0.87
151 6 0.05
152 7 0.06
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (150 bp):
GTCACGTGTGTAGTACTAAGTGCAGGCTACTACAGGTACCGGAATATTGGTCGCATGTGTAGTAC
TAAGTGCAGGCTACCATGCGTACCAGATAACTTCGATCAAGTGTGTAGAAATAAGTGTAGGCAAC
TATGTGTATCAGATGGTTAA
Found at i:37977939 original size:53 final size:54
Alignment explanation
Indices: 37977876--37978082 Score: 209
Period size: 53 Copynumber: 3.8 Consensus size: 54
37977866 TTCCTTTTTA
* * * *
37977876 AACTTACCATTGCCATGTCTTGACATTGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
37977929 AACTCACCATTGCAATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * *
37977983 TAGTTTATCAATGCCATGTCTTGACATGGTCTTAAATGATTTCCTTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
37978038 AACTTACCAATGCCATGCCGTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
37978083 AAACCTTAAT
Statistics
Matches: 120, Mismatches: 32, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
53 44 0.37
54 36 0.30
55 40 0.33
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:37984439 original size:53 final size:54
Alignment explanation
Indices: 37984371--37984577 Score: 227
Period size: 53 Copynumber: 3.8 Consensus size: 54
37984361 TTCCTTTTTA
* * *
37984371 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
37984424 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTTCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * *
37984478 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
37984533 AACTTACCAATGCTATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
37984578 AAACCCTAAT
Statistics
Matches: 123, Mismatches: 29, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 45 0.37
54 37 0.30
55 41 0.33
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:37985461 original size:20 final size:20
Alignment explanation
Indices: 37985436--37985482 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
37985426 AATCTTTAGT
37985436 TATTTTTATCTATGTATGTC
1 TATTTTTATCTATGTATGTC
37985456 TATTTTTATCTATGTATGTC
1 TATTTTTATCTATGTATGTC
*
37985476 CATTTTT
1 TATTTTT
37985483 GTCCATGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.19, C:0.11, G:0.09, T:0.62
Consensus pattern (20 bp):
TATTTTTATCTATGTATGTC
Found at i:37986818 original size:31 final size:31
Alignment explanation
Indices: 37986775--37986838 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
37986765 CCCTTTCATA
37986775 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
37986806 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
37986837 TT
1 TT
37986839 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:37987081 original size:24 final size:24
Alignment explanation
Indices: 37987045--37987174 Score: 208
Period size: 24 Copynumber: 5.4 Consensus size: 24
37987035 CTGGAGGCCT
* *
37987045 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTGATAACTGGGGCATA
*
37987070 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
*
37987094 AGCCC-TTTGATAATTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
37987117 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
37987141 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATA
37987165 AGCCCTTTTG
1 AGCCCTTTTG
37987175 CACTTCCTCC
Statistics
Matches: 100, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
23 21 0.21
24 75 0.75
25 4 0.04
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTGATAACTGGGGCATA
Found at i:37987131 original size:47 final size:48
Alignment explanation
Indices: 37987045--37987174 Score: 208
Period size: 47 Copynumber: 2.7 Consensus size: 48
37987035 CTGGAGGCCT
* * *
37987045 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATA
1 AGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
*
37987094 AGCCC-TTTGATAATTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
37987141 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTG
1 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTG
37987175 CACTTCCTCC
Statistics
Matches: 75, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
47 43 0.57
48 28 0.37
49 4 0.05
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (48 bp):
AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
Found at i:37987245 original size:9 final size:9
Alignment explanation
Indices: 37987231--37987287 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
37987221 ATCTCATGTG
37987231 CATATCATA
1 CATATCATA
*
37987240 CATATCATGTG
1 CATATCA--TA
37987251 CATATCATA
1 CATATCATA
* *
37987260 CATGTCATGTG
1 CATATCA--TA
37987271 CATATCATA
1 CATATCATA
37987280 CATATCAT
1 CATATCAT
37987288 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:37987247 original size:20 final size:20
Alignment explanation
Indices: 37987219--37987289 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
37987209 GCATTTATGA
*
37987219 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
37987239 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
37987259 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
37987279 ACATATCATGT
1 ACATATCATGT
37987290 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:37987254 original size:11 final size:11
Alignment explanation
Indices: 37987224--37987278 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
37987214 TATGAACATC
37987224 TCATGTGCATA
1 TCATGTGCATA
*
37987235 TCA--TACATA
1 TCATGTGCATA
37987244 TCATGTGCATA
1 TCATGTGCATA
* *
37987255 TCA--TACATG
1 TCATGTGCATA
37987264 TCATGTGCATA
1 TCATGTGCATA
37987275 TCAT
1 TCAT
37987279 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:37994586 original size:24 final size:24
Alignment explanation
Indices: 37994554--37994600 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
37994544 CTGTCAGGAG
*
37994554 AGGATTTAGGAGCTGATAAGGGAT
1 AGGATTTAGGAGCAGATAAGGGAT
37994578 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGCAGATAAGGGA
37994601 GGAAATCTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.36, C:0.04, G:0.38, T:0.21
Consensus pattern (24 bp):
AGGATTTAGGAGCAGATAAGGGAT
Found at i:37996052 original size:28 final size:27
Alignment explanation
Indices: 37996011--37996100 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 27
37996001 AGGAAGCGTC
*
37996011 CTGGTGGCTA-TGCCACAAATTATCTATT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
37996039 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
37996066 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
37996095 CTGGTG
1 CTGGTG
37996101 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 22 0.42
28 23 0.44
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:37996069 original size:27 final size:28
Alignment explanation
Indices: 37996011--37996100 Score: 103
Period size: 27 Copynumber: 3.2 Consensus size: 28
37996001 AGGAAGCGTC
* *
37996011 CTGGTGGCTA-TGCCACAAATTATCTATT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
37996039 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
37996066 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
37996095 CTGGTG
1 CTGGTG
37996101 ACTCTGTCAC
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 22 0.43
28 22 0.43
29 7 0.14
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:37996111 original size:29 final size:28
Alignment explanation
Indices: 37996021--37996111 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 28
37996011 CTGGTGGCTA
* * * *
37996021 TGCCACAAATTATCTATTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
37996049 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
37996076 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
37996105 TGTCACA
1 TGCCACA
37996112 TTTTCTGTAT
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
27 22 0.43
28 14 0.27
29 15 0.29
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:37996119 original size:55 final size:56
Alignment explanation
Indices: 37996011--37996125 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
37996001 AGGAAGCGTC
* * *
37996011 CTGGTGGCTATGCCACAAATTATCTATTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTATTCTGGTGACCCTGCCACATATATCTGTAT
* * * *
37996066 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTAT-TCTGGTGACCCTGCCACATATATCTGTAT
37996122 CTGG
1 CTGG
37996126 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.58
56 20 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTATTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:37997214 original size:11 final size:10
Alignment explanation
Indices: 37997186--37997219 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
37997176 AGCCTGTAAG
37997186 TATTCTGAAT
1 TATTCTGAAT
*
37997196 TTTTCTGAAT
1 TATTCTGAAT
37997206 ATATTCTGAAT
1 -TATTCTGAAT
37997217 TAT
1 TAT
37997220 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:38002428 original size:24 final size:24
Alignment explanation
Indices: 38002396--38002442 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
38002386 CTGTCAGGAG
*
38002396 AGGATTTAGGAGCTGATAAGGGAT
1 AGGATTTAGGAGCAGATAAGGGAT
38002420 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGCAGATAAGGGA
38002443 GGAAATCTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.36, C:0.04, G:0.38, T:0.21
Consensus pattern (24 bp):
AGGATTTAGGAGCAGATAAGGGAT
Found at i:38003743 original size:28 final size:28
Alignment explanation
Indices: 38003703--38003766 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
38003693 TGTACTAGAG
* *
38003703 TACCGCTATGTATGCAAAATTACCAT-TA
1 TACCCCTATGTATGCAAAATGACC-TCTA
38003731 TACCCCTATGTATGCAAAATGACCTCTA
1 TACCCCTATGTATGCAAAATGACCTCTA
38003759 TACCCCTA
1 TACCCCTA
38003767 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 1 0.03
28 32 0.97
ACGTcount: A:0.33, C:0.28, G:0.09, T:0.30
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATGACCTCTA
Found at i:38003913 original size:28 final size:27
Alignment explanation
Indices: 38003872--38003961 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 27
38003862 AGGAAGCGTC
*
38003872 CTGGTGGCTA-TGCCACAAATTATCTATT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
38003900 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
38003927 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
38003956 CTGGTG
1 CTGGTG
38003962 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 22 0.42
28 23 0.44
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:38003930 original size:27 final size:28
Alignment explanation
Indices: 38003872--38003961 Score: 103
Period size: 27 Copynumber: 3.2 Consensus size: 28
38003862 AGGAAGCGTC
* *
38003872 CTGGTGGCTA-TGCCACAAATTATCTATT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
38003900 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
38003927 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
38003956 CTGGTG
1 CTGGTG
38003962 ACTCTGTCAC
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 22 0.43
28 22 0.43
29 7 0.14
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:38003972 original size:29 final size:28
Alignment explanation
Indices: 38003882--38003972 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 28
38003872 CTGGTGGCTA
* * * *
38003882 TGCCACAAATTATCTATTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
38003910 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
38003937 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
38003966 TGTCACA
1 TGCCACA
38003973 TTTTCTGTAT
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
27 22 0.43
28 14 0.27
29 15 0.29
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:38003980 original size:55 final size:56
Alignment explanation
Indices: 38003872--38003986 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
38003862 AGGAAGCGTC
* * *
38003872 CTGGTGGCTATGCCACAAATTATCTATTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTATTCTGGTGACCCTGCCACATATATCTGTAT
* * * *
38003927 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTAT-TCTGGTGACCCTGCCACATATATCTGTAT
38003983 CTGG
1 CTGG
38003987 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.58
56 20 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTATTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:38018791 original size:24 final size:24
Alignment explanation
Indices: 38018730--38018793 Score: 119
Period size: 24 Copynumber: 2.7 Consensus size: 24
38018720 AGAAAATACA
*
38018730 GCACTATGTGTGCAAGGCTATGCG
1 GCACTATGTGTGCGAGGCTATGCG
38018754 GCACTATGTGTGCGAGGCTATGCG
1 GCACTATGTGTGCGAGGCTATGCG
38018778 GCACTATGTGTGCGAG
1 GCACTATGTGTGCGAG
38018794 AAAACATGGC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.19, C:0.20, G:0.36, T:0.25
Consensus pattern (24 bp):
GCACTATGTGTGCGAGGCTATGCG
Found at i:38020454 original size:27 final size:26
Alignment explanation
Indices: 38020406--38020457 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
38020396 GCGAGGCTAC
*
38020406 CAGATATTGTGATGAAGTCACCAGAA
1 CAGATATTGTGATGAAGCCACCAGAA
* *
38020432 CAGATATATGTGGTGAGGCCACCAGA
1 CAGATAT-TGTGATGAAGCCACCAGA
38020458 TTACAACGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.17, G:0.27, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGATGAAGCCACCAGAA
Found at i:38026505 original size:14 final size:14
Alignment explanation
Indices: 38026483--38026512 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
38026473 TAAGTATGTA
*
38026483 CATTCATAAATTAG
1 CATTAATAAATTAG
38026497 CATTAATAAATTAG
1 CATTAATAAATTAG
38026511 CA
1 CA
38026513 ATAACATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.07, T:0.33
Consensus pattern (14 bp):
CATTAATAAATTAG
Found at i:38027876 original size:30 final size:31
Alignment explanation
Indices: 38027795--38027877 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
38027785 TCAGTCTCGA
38027795 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
38027825 CATATCACTGGGCCAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
38027856 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
38027878 ACTGTAAGCG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
30 17 0.34
31 33 0.66
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:38027948 original size:42 final size:42
Alignment explanation
Indices: 38027901--38027992 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
38027891 TGGCCCATAG
* * *
38027901 GCCCATTTCAATATCACATGTAATATCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGCATGCAA
38027943 GCCCATTTCAATATCACATGAAATACCAATGAATGCATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGCATGCAA
38027985 GCCCATTT
1 GCCCATTT
38027993 GGGGAGACTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.37, C:0.23, G:0.12, T:0.28
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGCATGCAA
Found at i:38028165 original size:24 final size:24
Alignment explanation
Indices: 38028133--38028183 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
38028123 GCCTAGCCTC
*
38028133 TTTTAATAACTGGGGCAGAACCCT
1 TTTTAATAAATGGGGCAGAACCCT
* *
38028157 TTTTGATAAATGGGGCAGAGCCCT
1 TTTTAATAAATGGGGCAGAACCCT
38028181 TTT
1 TTT
38028184 AGCACTTCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (24 bp):
TTTTAATAAATGGGGCAGAACCCT
Found at i:38031192 original size:27 final size:27
Alignment explanation
Indices: 38031162--38031220 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
38031152 GTATACCTAG
* * *
38031162 ACCCCAATTAGATGAAATGACTGTTAT
1 ACCCCAATGAGATAAAATGACTGATAT
* *
38031189 ACCCCTATGAGGTAAAATGACTGATAT
1 ACCCCAATGAGATAAAATGACTGATAT
38031216 ACCCC
1 ACCCC
38031221 TGTGATATGT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.25
Consensus pattern (27 bp):
ACCCCAATGAGATAAAATGACTGATAT
Found at i:38034736 original size:16 final size:16
Alignment explanation
Indices: 38034715--38034749 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
38034705 CCCCTTCCAT
38034715 TTTATTT-ATTTGTTTA
1 TTTATTTCATTT-TTTA
38034731 TTTATTTCATTTTTTA
1 TTTATTTCATTTTTTA
38034747 TTT
1 TTT
38034750 GTTTTATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.77
Consensus pattern (16 bp):
TTTATTTCATTTTTTA
Found at i:38034750 original size:24 final size:26
Alignment explanation
Indices: 38034719--38034771 Score: 76
Period size: 24 Copynumber: 2.1 Consensus size: 26
38034709 TTCCATTTTA
38034719 TTTATTTG-TTTATT-T-ATTTCATTT
1 TTTATTTGTTTTATTATCATTT-ATTT
38034743 TTTATTTGTTTTATTATCATTTATTT
1 TTTATTTGTTTTATTATCATTTATTT
38034769 TTT
1 TTT
38034772 TTACTATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
24 8 0.31
25 6 0.23
26 8 0.31
27 4 0.15
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.75
Consensus pattern (26 bp):
TTTATTTGTTTTATTATCATTTATTT
Found at i:38034759 original size:12 final size:13
Alignment explanation
Indices: 38034714--38034757 Score: 56
Period size: 12 Copynumber: 3.5 Consensus size: 13
38034704 GCCCCTTCCA
38034714 TTTTATTTATTTG
1 TTTTATTTATTTG
*
38034727 -TTTATTTATTTC
1 TTTTATTTATTTG
*
38034739 ATTT-TTTATTTG
1 TTTTATTTATTTG
38034751 TTTTATT
1 TTTTATT
38034758 ATCATTTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
12 21 0.81
13 5 0.19
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.77
Consensus pattern (13 bp):
TTTTATTTATTTG
Found at i:38034759 original size:28 final size:28
Alignment explanation
Indices: 38034714--38034796 Score: 77
Period size: 28 Copynumber: 3.0 Consensus size: 28
38034704 GCCCCTTCCA
38034714 TTTTATTTATTTGT-TTATTTATTTCATT
1 TTTTATTTATTT-TATTATTTATTTCATT
* *
38034742 TTTTATTTGTTTTATTA-TCATTT-ATT
1 TTTTATTTATTTTATTATTTATTTCATT
38034768 TTTT-TTACTATTTTTATT-TTTATTTCATT
1 TTTTATT--TA-TTTTATTATTTATTTCATT
38034797 ATTTGTACTT
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
25 2 0.04
26 7 0.16
27 7 0.16
28 26 0.58
29 3 0.07
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.75
Consensus pattern (28 bp):
TTTTATTTATTTTATTATTTATTTCATT
Found at i:38036361 original size:6 final size:6
Alignment explanation
Indices: 38036327--38036357 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
38036317 TTTTCAGTTG
*
38036327 TCTTTT TCTTTT TCTTTT TCTTTT TATTTT T
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT T
38036358 ATTTCTTAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (6 bp):
TCTTTT
Found at i:38042289 original size:29 final size:29
Alignment explanation
Indices: 38042246--38042347 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 29
38042236 TGAATGTGGC
* *
38042246 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCTTAATGGGCCATATAAATGTGATT
* * * *
38042275 TGGGCTTAATAGGCCATATACAGGTGGTT
1 TGGGCTTAATGGGCCATATAAATGTGATT
* * *
38042304 TGGGCCTAATGGGCCATATGAATATGA-T
1 TGGGCTTAATGGGCCATATAAATGTGATT
38042332 TGGGCTTAATGGGCCA
1 TGGGCTTAATGGGCCA
38042348 AATATAGGTA
Statistics
Matches: 59, Mismatches: 14, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
28 16 0.27
29 43 0.73
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.28
Consensus pattern (29 bp):
TGGGCTTAATGGGCCATATAAATGTGATT
Found at i:38042318 original size:58 final size:57
Alignment explanation
Indices: 38042246--38042356 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 57
38042236 TGAATGTGGC
* *
38042246 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCTTAATAGGCCATATACAGGTGGTT
1 TGGGCCTAACGGGCCATATAAATATGA-TTGGGCTTAATAGGCCAAATACAGGTGGTT
* * * *
38042304 TGGGCCTAATGGGCCATATGAATATGATTGGGCTTAATGGGCCAAATATAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTGGGCTTAATAGGCCAAATACAGGT
38042357 ATGTGAATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 23 0.49
58 24 0.51
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAATATGATTGGGCTTAATAGGCCAAATACAGGTGGTT
Found at i:38047642 original size:37 final size:37
Alignment explanation
Indices: 38047592--38047670 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
38047582 TTATTACGAA
* * *
38047592 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
38047629 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
38047666 GTCTT
1 GTCTT
38047671 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:38047860 original size:47 final size:47
Alignment explanation
Indices: 38047789--38048519 Score: 1149
Period size: 47 Copynumber: 15.4 Consensus size: 47
38047779 CCCTTCGGGA
* * * * * *
38047789 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
38047836 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38047883 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
38047930 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
38047977 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
38048026 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38048073 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
38048119 CTTATCACATATATACACTTTCACATTCATCACATCGGCAATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
38048166 CTTATCACATATATATACACTTTCACATTCATCAGATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
38048215 CTTATCACATAAATATACACTTTCACATTCATCACATTGTCCATTCGGC
1 CTTATCACAT--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
38048264 CTTACCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
38048311 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGG
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
38048358 CTTACCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
38048407 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38048454 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
38048501 CTTATCACATATATACACT
1 CTTATCACATATATACACT
38048520 CACATCACAA
Statistics
Matches: 635, Mismatches: 40, Indels: 18
0.92 0.06 0.03
Matches are distributed among these distances:
46 46 0.07
47 416 0.66
49 173 0.27
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:38047867 original size:25 final size:25
Alignment explanation
Indices: 38047839--38047917 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
38047829 ACTCGGCCCT
38047839 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
38047864 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
38047886 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
38047911 ATCACAT
1 ATCACAT
38047918 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:38048045 original size:143 final size:141
Alignment explanation
Indices: 38047789--38048519 Score: 1167
Period size: 143 Copynumber: 5.1 Consensus size: 141
38047779 CCCTTCGGGA
* * * * *
38047789 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* *
38047854 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
38047919 GGCCATTAGGC
131 GGCCATTAGGC
* * *
38047930 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
* * *
38047995 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCATATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
38048060 TCGGCCATTAGGC
129 TCGGCCATTAGGC
* *
38048073 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* *
38048137 TTTCACATTCATCACATCGGCAATTAGGCCTTATCACATATATATACACTTTCACATTCATCAGA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
*
38048202 TTGGCCATTAGGC
129 TCGGCCATTAGGC
* *
38048215 CTTATCACATAAATATACACTTTCACATTCATCACATTGTCCATTCGGCCTTACCACATATATAC
1 CTTATCACAT--ATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
38048280 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
38048345 TCGGCCATTAGGG
129 TCGGCCATTAGGC
*
38048358 CTTACCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
38048423 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
38048488 TCGGCCATTAGGC
129 TCGGCCATTAGGC
38048501 CTTATCACATATATACACT
1 CTTATCACATATATACACT
38048520 CACATCACAA
Statistics
Matches: 552, Mismatches: 29, Indels: 18
0.92 0.05 0.03
Matches are distributed among these distances:
140 43 0.08
141 58 0.11
142 63 0.11
143 300 0.54
144 26 0.05
145 62 0.11
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:38052634 original size:27 final size:29
Alignment explanation
Indices: 38052594--38052653 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
38052584 AGGACATCCA
** *
38052594 AGAATTTTTTGAAT-TTAAAATCTTGTTT
1 AGAATTTTTTGAATCCAAAAATATTGTTT
38052622 AGAA-TTTTTGAATCCAAAAATATTGTTT
1 AGAATTTTTTGAATCCAAAAATATTGTTT
38052650 AGAA
1 AGAA
38052654 GAGCAAACAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 9 0.32
28 19 0.68
ACGTcount: A:0.38, C:0.05, G:0.12, T:0.45
Consensus pattern (29 bp):
AGAATTTTTTGAATCCAAAAATATTGTTT
Found at i:38057190 original size:24 final size:24
Alignment explanation
Indices: 38057163--38057236 Score: 121
Period size: 24 Copynumber: 3.0 Consensus size: 24
38057153 AAGGCTGTCA
38057163 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
38057187 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
38057211 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
38057236 G
1 G
38057237 AGCTGGAGTT
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
24 42 0.93
25 3 0.07
ACGTcount: A:0.36, C:0.05, G:0.38, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:38064738 original size:24 final size:24
Alignment explanation
Indices: 38064711--38064803 Score: 132
Period size: 24 Copynumber: 3.9 Consensus size: 24
38064701 AAGGCTGTCA
38064711 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
38064735 GGAGAGGATTTAGGAGATGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* * * *
38064759 GGAGAGGATTTAGGTGCTAATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
38064783 GGAGAAGATTTAGGAGCTGAT
1 GGAGAAGATTTAGGAGCTGAT
38064804 CAAAGAGCAG
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 60 1.00
ACGTcount: A:0.37, C:0.03, G:0.38, T:0.23
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:38066127 original size:32 final size:32
Alignment explanation
Indices: 38066043--38066127 Score: 75
Period size: 32 Copynumber: 2.6 Consensus size: 32
38066033 GTACAGTTAT
* * *
38066043 CTGAATAAGGGGCTAAGGCCCAGTTTATTGTGAT
1 CTGAA-AA-GGGCTTAGGCCCAGTTTACTGTGAA
*
38066077 CTGAAAAGGGCTGT-GGCCCAGTTTCACTGTTAA
1 CTGAAAAGGGCT-TAGGCCCAGTTT-ACTGTGAA
*
38066110 CTG-AATGGGCTTAGGCCC
1 CTGAAAAGGGCTTAGGCCC
38066128 GATGGGCTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
31 1 0.02
32 27 0.63
33 10 0.23
34 5 0.12
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (32 bp):
CTGAAAAGGGCTTAGGCCCAGTTTACTGTGAA
Found at i:38072760 original size:27 final size:27
Alignment explanation
Indices: 38072723--38072857 Score: 173
Period size: 27 Copynumber: 5.0 Consensus size: 27
38072713 TCGTTAAGAT
*
38072723 CCCCTGTTTGTAAAATTATCAAAATAC
1 CCCCTGTTTGTAAAATTATCGAAATAC
38072750 CCCCTGTTTGTAAAATTATCGAAATAC
1 CCCCTGTTTGTAAAATTATCGAAATAC
* * *
38072777 CCACTGTTTATAAAATTACCGAAATAC
1 CCCCTGTTTGTAAAATTATCGAAATAC
* *
38072804 CCCCAGTTTGTAAAGTTATCGAAATAC
1 CCCCTGTTTGTAAAATTATCGAAATAC
* * *
38072831 CCCCAGTTTGCAAAGTTA-CTGAAATAC
1 CCCCTGTTTGTAAAATTATC-GAAATAC
38072858 TCTTGTAGGG
Statistics
Matches: 97, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
26 1 0.01
27 96 0.99
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.30
Consensus pattern (27 bp):
CCCCTGTTTGTAAAATTATCGAAATAC
Found at i:38073317 original size:27 final size:27
Alignment explanation
Indices: 38073287--38073355 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
38073277 TATGGCTTTA
*
38073287 TGCCAATCATATTTATCTG-TGGCTATG
1 TGCCAATCATATTTAT-TGATGACTATG
* *
38073314 TGCCTATCATATTTATTGATGACTTTG
1 TGCCAATCATATTTATTGATGACTATG
* *
38073341 TGTCGATCATATTTA
1 TGCCAATCATATTTA
38073356 CCCATGGTTG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
26 2 0.06
27 34 0.94
ACGTcount: A:0.23, C:0.16, G:0.16, T:0.45
Consensus pattern (27 bp):
TGCCAATCATATTTATTGATGACTATG
Found at i:38081022 original size:15 final size:17
Alignment explanation
Indices: 38081004--38081035 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
38080994 TAGCATATTT
38081004 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
38081019 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
38081036 CAAGTATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:38082113 original size:24 final size:27
Alignment explanation
Indices: 38082086--38082137 Score: 74
Period size: 24 Copynumber: 2.0 Consensus size: 27
38082076 AGTTCATGCA
38082086 ATATTAAAGC-ATTTAA-ATAC-AATT
1 ATATTAAAGCTATTTAACATACGAATT
38082110 ATATTAAAGCTTATTTAACATACGAATT
1 ATATTAAAGC-TATTTAACATACGAATT
38082138 TACCTCAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 10 0.42
26 6 0.25
27 4 0.17
28 4 0.17
ACGTcount: A:0.46, C:0.10, G:0.06, T:0.38
Consensus pattern (27 bp):
ATATTAAAGCTATTTAACATACGAATT
Found at i:38098317 original size:24 final size:24
Alignment explanation
Indices: 38098272--38098317 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
38098262 CTTCAATTCG
* * *
38098272 AAAGTAGTCACGGTTAGTCAACCC
1 AAAGTAGCCACAGTTAGGCAACCC
*
38098296 AAAGTAGCCACAGTTGGGCAAC
1 AAAGTAGCCACAGTTAGGCAAC
38098318 AGGGCTCTCA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (24 bp):
AAAGTAGCCACAGTTAGGCAACCC
Found at i:38101552 original size:29 final size:29
Alignment explanation
Indices: 38101489--38101556 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
38101479 TAATCAACCG
38101489 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
38101518 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
38101547 CGCACACTTA
1 CGCACACTTA
38101557 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:38101669 original size:174 final size:174
Alignment explanation
Indices: 38101378--38101705 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
38101368 AACTCAAGGT
* *
38101378 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
38101443 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
38101508 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
38101552 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
38101617 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
38101682 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
38101706 TGTATAATTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:38101697 original size:29 final size:29
Alignment explanation
Indices: 38101658--38101736 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 29
38101648 CTTAATAATC
* *
38101658 AACCACGCACACTTAGTGCCATGTACTTTA
1 AACC-CGCACACTTAGTGCCATATAATTTA
* **
38101688 AACTCGCACACTTAGTGCTGTATAATTTA
1 AACCCGCACACTTAGTGCCATATAATTTA
38101717 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
38101737 ATCTCATGAC
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
29 38 0.93
30 3 0.07
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATATAATTTA
Found at i:38102836 original size:13 final size:13
Alignment explanation
Indices: 38102818--38102842 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
38102808 GGATGAGCAT
38102818 TTTTTTTTCTTTG
1 TTTTTTTTCTTTG
38102831 TTTTTTTTCTTT
1 TTTTTTTTCTTT
38102843 CTAGTTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:38109754 original size:29 final size:29
Alignment explanation
Indices: 38109691--38109758 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
38109681 TAATCAACCG
38109691 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
38109720 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
38109749 CGCACACTTA
1 CGCACACTTA
38109759 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:38109871 original size:174 final size:174
Alignment explanation
Indices: 38109580--38109907 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
38109570 AACTCAAGGT
* *
38109580 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
38109645 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
38109710 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
38109754 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
38109819 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
38109884 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
38109908 TGCACAATTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:38109899 original size:29 final size:30
Alignment explanation
Indices: 38109860--38109938 Score: 101
Period size: 29 Copynumber: 2.7 Consensus size: 30
38109850 CTTAATAATC
*
38109860 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGCACATTTA
*
38109890 AACTCGCACACTTAGTG-C-TGCACAATTTA
1 AACCCGCACACTTAGTGCCATGCAC-ATTTA
38109919 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
38109939 ATCTCATGAC
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
27 4 0.10
28 1 0.02
29 33 0.79
30 4 0.10
ACGTcount: A:0.30, C:0.32, G:0.14, T:0.24
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGCACATTTA
Found at i:38116479 original size:49 final size:49
Alignment explanation
Indices: 38116406--38116532 Score: 150
Period size: 49 Copynumber: 2.6 Consensus size: 49
38116396 GTTGTTGACG
38116406 CCATGTCCCAGACATGGTCTTACACTGACT-TCCATATATCGAG-GCCGACA
1 CCATGTCCCAGACA-GGTCTTACACTGACTCT-CATATATCG-GTGCCGACA
* * * * * **
38116456 CCATGCCCCAAACAGGTCTTACACTGGCTCTCATCTATCGGTGTCGATG
1 CCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGCCGACA
38116505 CCATGTCCCAGACAGGTCTTACACTGAC
1 CCATGTCCCAGACAGGTCTTACACTGAC
38116533 ACACAACAAG
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
48 1 0.02
49 51 0.78
50 13 0.20
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (49 bp):
CCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGCCGACA
Found at i:38116995 original size:46 final size:42
Alignment explanation
Indices: 38116943--38117066 Score: 149
Period size: 46 Copynumber: 2.8 Consensus size: 42
38116933 ACCTCGAGGT
38116943 TGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATG
1 TGATGCATGTCCCAGACATGTCTTACACTAGCTCTCA--T-AATG
** *
38116988 CTGATGCATGTCTTAGACATGTCTTACACTGGCTCTCATAATG
1 -TGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATG
38117031 TGGCCAATGCATGTCCCAGACATGTCTTACACTAGC
1 T-G---ATGCATGTCCCAGACATGTCTTACACTAGC
38117067 ACGCATATCA
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
42 1 0.01
43 5 0.07
44 1 0.01
46 61 0.90
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (42 bp):
TGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATG
Found at i:38127892 original size:47 final size:47
Alignment explanation
Indices: 38127815--38128222 Score: 645
Period size: 47 Copynumber: 8.6 Consensus size: 47
38127805 GATAATTGTG
38127815 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
38127864 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
38127911 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
38127958 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
38128007 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
38128056 ATGTGAAAGTGTATATATGTGATAAGGCCTAATCGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
38128103 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
38128150 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
38128197 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
38128223 TCCCGAAGGG
Statistics
Matches: 339, Mismatches: 18, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
47 234 0.69
49 105 0.31
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:38128147 original size:192 final size:190
Alignment explanation
Indices: 38127815--38128222 Score: 676
Period size: 192 Copynumber: 2.1 Consensus size: 190
38127805 GATAATTGTG
38127815 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
38127880 ATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCTAATCGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
* * * *
38127945 GCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
131 GCCAATGTGATGAATGTGAAAGTG--TATATATGTGACAAGGCCGAATGGCCAACGTGATGA
38128007 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * *
38128072 ATGTGATAAGGCCTAATCGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATG
66 ATGTGATAAGGCCTAATCGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
* * * *
38128137 GCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
131 GCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGA
38128197 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
38128223 TCCCGAAGGG
Statistics
Matches: 204, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
188 10 0.05
189 1 0.00
190 44 0.22
192 149 0.73
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (190 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATCGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
GCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGA
Found at i:38131529 original size:16 final size:15
Alignment explanation
Indices: 38131498--38131528 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
38131488 AGTCGGGTTA
*
38131498 TAAATTTTTTCTTTT
1 TAAAATTTTTCTTTT
38131513 TAAAATTTTTCTTTT
1 TAAAATTTTTCTTTT
38131528 T
1 T
38131529 TCTAAATTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (15 bp):
TAAAATTTTTCTTTT
Found at i:38133156 original size:54 final size:54
Alignment explanation
Indices: 38133092--38133224 Score: 221
Period size: 54 Copynumber: 2.5 Consensus size: 54
38133082 TTTACTACGA
* *
38133092 GATTACCAGTCCAGGCTAAATCCCCCGTAGTATAAACTCATAGAGTAATATCGG
1 GATTACCAGTCCAGGCTAAATCCCCCATAGTATAAACTCATAGAGTAATACCGG
** *
38133146 GATTACCAGTCTGGGCTAAATCCCCCATAGTATAAACTCATAGAGTAATGCCGG
1 GATTACCAGTCCAGGCTAAATCCCCCATAGTATAAACTCATAGAGTAATACCGG
38133200 GATTACCAGTCCAGGCTAAATCCCC
1 GATTACCAGTCCAGGCTAAATCCCC
38133225 TACAATGACA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 72 1.00
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (54 bp):
GATTACCAGTCCAGGCTAAATCCCCCATAGTATAAACTCATAGAGTAATACCGG
Found at i:38134423 original size:596 final size:596
Alignment explanation
Indices: 38133291--38134484 Score: 2379
Period size: 596 Copynumber: 2.0 Consensus size: 596
38133281 CGGATCCTAA
38133291 TTCAGATTACCTGTCTGGGCTAAATCCATTTAAAACACATTCTTCAGGAGGCTAGATCACATAAG
1 TTCAGATTACCTGTCTGGGCTAAATCCATTTAAAACACATTCTTCAGGAGGCTAGATCACATAAG
38133356 GAACACCCGTCTGGGCTAGATCCTTTTTACTGTCAATTCATTTTCAAAAATTCCATCGGATGCCC
66 GAACACCCGTCTGGGCTAGATCCTTTTTACTGTCAATTCATTTTCAAAAATTCCATCGGATGCCC
38133421 TTTTCATTCAACCGAGATATTTAAATCCTTTATAAATCAATACAATCATGTTTCATGAATTATTA
131 TTTTCATTCAACCGAGATATTTAAATCCTTTATAAATCAATACAATCATGTTTCATGAATTATTA
38133486 TACATTGAGCATTAAAATTTACATCACATTCAAGAATATACATTTAAGTATTTTAAAAGTATTAC
196 TACATTGAGCATTAAAATTTACATCACATTCAAGAATATACATTTAAGTATTTTAAAAGTATTAC
38133551 TTCGAGTTACATGAACTTACTTGGAAGATGTTTCAAATTTGGATTTCAGTTATTCTGAAACCTTT
261 TTCGAGTTACATGAACTTACTTGGAAGATGTTTCAAATTTGGATTTCAGTTATTCTGAAACCTTT
38133616 TGTTTTCCACGGTCAACCTCCAGAATTGGTCTCTCGGGGTCTATATAAACAAAATAAATTATTAT
326 TGTTTTCCACGGTCAACCTCCAGAATTGGTCTCTCGGGGTCTATATAAACAAAATAAATTATTAT
38133681 TCTATCTCATTATTCAATTTTAGCCCAAAATTTCACTCTTGGGCAAAATGACCACTATACCCCTA
391 TCTATCTCATTATTCAATTTTAGCCCAAAATTTCACTCTTGGGCAAAATGACCACTATACCCCTA
38133746 ACCTTTCACATTTTTACAATTTGGGCCTAATGCTCATAAAACAAAATGCAAGTATTTTCTTGGTT
456 ACCTTTCACATTTTTACAATTTGGGCCTAATGCTCATAAAACAAAATGCAAGTATTTTCTTGGTT
*
38133811 ACCCAGGGCTAGAAAAATCTATTCTAAGCTCATATCAGGCCACATTTTCCTCTATTTCATATTTC
521 ACCCAGGCCTAGAAAAATCTATTCTAAGCTCATATCAGGCCACATTTTCCTCTATTTCATATTTC
38133876 TACCACCCATT
586 TACCACCCATT
38133887 TTCAGATTACCTGTCTGGGCTAAATCCATTTAAAACACATTCTTCAGGAGGCTAGATCACATAAG
1 TTCAGATTACCTGTCTGGGCTAAATCCATTTAAAACACATTCTTCAGGAGGCTAGATCACATAAG
38133952 GAACACCCGTCTGGGCTAGATCCTTTTTACTGTCAATTCATTTTCAAAAATTCCATCGGATGCCC
66 GAACACCCGTCTGGGCTAGATCCTTTTTACTGTCAATTCATTTTCAAAAATTCCATCGGATGCCC
38134017 TTTTCATTCAACCGAGATATTTAAATCCTTTATAAATCAATACAATCATGTTTCATGAATTATTA
131 TTTTCATTCAACCGAGATATTTAAATCCTTTATAAATCAATACAATCATGTTTCATGAATTATTA
38134082 TACATTGAGCATTAAAATTTACATCACATTCAAGAATATACATTTAAGTATTTTAAAAGTATTAC
196 TACATTGAGCATTAAAATTTACATCACATTCAAGAATATACATTTAAGTATTTTAAAAGTATTAC
38134147 TTCGAGTTACATGAACTTACTTGGAAGATGTTTCAAATTTGGATTTCAGTTATTCTGAAACCTTT
261 TTCGAGTTACATGAACTTACTTGGAAGATGTTTCAAATTTGGATTTCAGTTATTCTGAAACCTTT
38134212 TGTTTTCCACGGTCAACCTCCAGAATTGGTCTCTCGGGGTCTATATAAACAAAATAAATTATTAT
326 TGTTTTCCACGGTCAACCTCCAGAATTGGTCTCTCGGGGTCTATATAAACAAAATAAATTATTAT
38134277 TCTATCTCATTATTCAATTTTAGCCCAAAATTTCACTCTTGGGCAAAATGACCACTATACCCCTA
391 TCTATCTCATTATTCAATTTTAGCCCAAAATTTCACTCTTGGGCAAAATGACCACTATACCCCTA
38134342 ACCTTTCACATTTTTACAATTTGGGCCTAATGCTCATAAAACAAAATGCAAGTATTTTCTTGGTT
456 ACCTTTCACATTTTTACAATTTGGGCCTAATGCTCATAAAACAAAATGCAAGTATTTTCTTGGTT
38134407 ACCCAGGCCTAGAAAAATCTATTCTAAGCTCATATCAGGCCACATTTTCCTCTATTTCATATTTC
521 ACCCAGGCCTAGAAAAATCTATTCTAAGCTCATATCAGGCCACATTTTCCTCTATTTCATATTTC
38134472 TACCACCCATT
586 TACCACCCATT
38134483 TT
1 TT
38134485 GTACCTTTTA
Statistics
Matches: 597, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
596 597 1.00
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.36
Consensus pattern (596 bp):
TTCAGATTACCTGTCTGGGCTAAATCCATTTAAAACACATTCTTCAGGAGGCTAGATCACATAAG
GAACACCCGTCTGGGCTAGATCCTTTTTACTGTCAATTCATTTTCAAAAATTCCATCGGATGCCC
TTTTCATTCAACCGAGATATTTAAATCCTTTATAAATCAATACAATCATGTTTCATGAATTATTA
TACATTGAGCATTAAAATTTACATCACATTCAAGAATATACATTTAAGTATTTTAAAAGTATTAC
TTCGAGTTACATGAACTTACTTGGAAGATGTTTCAAATTTGGATTTCAGTTATTCTGAAACCTTT
TGTTTTCCACGGTCAACCTCCAGAATTGGTCTCTCGGGGTCTATATAAACAAAATAAATTATTAT
TCTATCTCATTATTCAATTTTAGCCCAAAATTTCACTCTTGGGCAAAATGACCACTATACCCCTA
ACCTTTCACATTTTTACAATTTGGGCCTAATGCTCATAAAACAAAATGCAAGTATTTTCTTGGTT
ACCCAGGCCTAGAAAAATCTATTCTAAGCTCATATCAGGCCACATTTTCCTCTATTTCATATTTC
TACCACCCATT
Found at i:38141597 original size:27 final size:27
Alignment explanation
Indices: 38141558--38141663 Score: 124
Period size: 27 Copynumber: 3.9 Consensus size: 27
38141548 TGTTGGGACG
*
38141558 AAATACCCCCATAGGGTAAAATGACCA
1 AAATACCCCCATAAGGTAAAATGACCA
* ***
38141585 AAATACCCTCAT-AGAGTAAAATGATTG
1 AAATACCCCCATAAG-GTAAAATGACCA
38141612 AAATACCCCCATAAGGTAAAATGACCA
1 AAATACCCCCATAAGGTAAAATGACCA
* **
38141639 AAATACCTCTGTAAGGTAAAATGAC
1 AAATACCCCCATAAGGTAAAATGAC
38141664 AGTTTTTCCC
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
26 1 0.02
27 62 0.95
28 2 0.03
ACGTcount: A:0.45, C:0.21, G:0.14, T:0.20
Consensus pattern (27 bp):
AAATACCCCCATAAGGTAAAATGACCA
Found at i:38141685 original size:27 final size:27
Alignment explanation
Indices: 38141653--38141896 Score: 280
Period size: 27 Copynumber: 9.0 Consensus size: 27
38141643 ACCTCTGTAA
*
38141653 GGTAAAATGACAGTTTTTCCCTTATGT
1 GGTAAAATGACAGTTTTGCCCTTATGT
* * *
38141680 GTTAAAATGA-TGATTTTGCCCTTATAT
1 GGTAAAATGACAG-TTTTGCCCTTATGT
* *
38141707 GATAAAATGACTGTTTTGCCCTTATGT
1 GGTAAAATGACAGTTTTGCCCTTATGT
*
38141734 GGAAAAATGACTA-TTTTGCCCTTATGT
1 GGTAAAATGAC-AGTTTTGCCCTTATGT
*
38141761 GTTAAAATGACTA-TTTTGCCCTTATGT
1 GGTAAAATGAC-AGTTTTGCCCTTATGT
* *
38141788 GTTAAAATGACAGTTTTTCCCTTATGT
1 GGTAAAATGACAGTTTTGCCCTTATGT
* *
38141815 GGTAAAATGACGGTTTTGCCCTTATGA
1 GGTAAAATGACAGTTTTGCCCTTATGT
*
38141842 GGTAAAATGACTGTTTTGCCCTTATGT
1 GGTAAAATGACAGTTTTGCCCTTATGT
** *
38141869 GGTAGGATGATTA-TTTTGCCCTTATGT
1 GGTAAAATGA-CAGTTTTGCCCTTATGT
38141896 G
1 G
38141897 ATGTATGTTT
Statistics
Matches: 190, Mismatches: 22, Indels: 10
0.86 0.10 0.05
Matches are distributed among these distances:
26 2 0.01
27 186 0.98
28 2 0.01
ACGTcount: A:0.25, C:0.14, G:0.20, T:0.41
Consensus pattern (27 bp):
GGTAAAATGACAGTTTTGCCCTTATGT
Found at i:38141741 original size:81 final size:82
Alignment explanation
Indices: 38141656--38141896 Score: 319
Period size: 81 Copynumber: 3.0 Consensus size: 82
38141646 TCTGTAAGGT
* *
38141656 AAAATGACAGTTTTTCCCTTATGTGTTAAAATGA-TGATTTTGCCCTTATATGATAAAATGACTG
1 AAAATGACAGTTTTGCCCTTATGTGTTAAAATGACTGATTTTGCCCTTATGTGATAAAATGACTG
38141720 TTTTGCCCTTATGTGGA
66 TTTTGCCCTTATGTGGA
* *
38141737 AAAATGACTA-TTTTGCCCTTATGTGTTAAAATGACT-ATTTTGCCCTTATGTGTTAAAATGACA
1 AAAATGAC-AGTTTTGCCCTTATGTGTTAAAATGACTGATTTTGCCCTTATGTGATAAAATGACT
* *
38141800 GTTTTTCCCTTATGTGGT
65 GTTTTGCCCTTATGTGGA
* * * * ** * *
38141818 AAAATGACGGTTTTGCCCTTATGAGGTAAAATGACTG-TTTTGCCCTTATGTGGTAGGATGATTA
1 AAAATGACAGTTTTGCCCTTATGTGTTAAAATGACTGATTTTGCCCTTATGTGATAAAATGACTG
38141882 TTTTGCCCTTATGTG
66 TTTTGCCCTTATGTG
38141897 ATGTATGTTT
Statistics
Matches: 140, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
81 138 0.99
82 2 0.01
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.41
Consensus pattern (82 bp):
AAAATGACAGTTTTGCCCTTATGTGTTAAAATGACTGATTTTGCCCTTATGTGATAAAATGACTG
TTTTGCCCTTATGTGGA
Found at i:38142245 original size:18 final size:18
Alignment explanation
Indices: 38142219--38142291 Score: 92
Period size: 18 Copynumber: 4.1 Consensus size: 18
38142209 GGACTTGCAT
*
38142219 ACTGCTTACTGTTACTGC
1 ACTGTTTACTGTTACTGC
* *
38142237 ACTGTTTACTATTACTGT
1 ACTGTTTACTGTTACTGC
*
38142255 ACTGATTACTGTTACTGC
1 ACTGTTTACTGTTACTGC
* *
38142273 ACTGTTTATTGTTATTGC
1 ACTGTTTACTGTTACTGC
38142291 A
1 A
38142292 ATGGGCCAAG
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 46 1.00
ACGTcount: A:0.21, C:0.19, G:0.15, T:0.45
Consensus pattern (18 bp):
ACTGTTTACTGTTACTGC
Found at i:38142262 original size:12 final size:13
Alignment explanation
Indices: 38142218--38142271 Score: 53
Period size: 13 Copynumber: 4.4 Consensus size: 13
38142208 AGGACTTGCA
*
38142218 TACTGCTTACTGT
1 TACTGATTACTGT
*
38142231 TACTG--CACTGTT
1 TACTGATTACTG-T
38142243 TACT-ATTACTG-
1 TACTGATTACTGT
38142254 TACTGATTACTGT
1 TACTGATTACTGT
38142267 TACTG
1 TACTG
38142272 CACTGTTTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
11 8 0.24
12 12 0.35
13 14 0.41
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.44
Consensus pattern (13 bp):
TACTGATTACTGT
Found at i:38144245 original size:46 final size:45
Alignment explanation
Indices: 38144178--38144352 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 45
38144168 TGTAACCCGC
*
38144178 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
*
38144224 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** * * *
38144270 ACATCTCTCGAACTTGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
38144317 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
38144353 ATGCCCAAAT
Statistics
Matches: 107, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 66 0.62
47 31 0.29
49 3 0.03
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:38144299 original size:93 final size:93
Alignment explanation
Indices: 38144186--38144357 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
38144176 GCCCATAAGT
*
38144186 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
38144250 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
* * *
38144279 GAACTTGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
38144344 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
38144358 CAAATATCCT
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:38144372 original size:46 final size:46
Alignment explanation
Indices: 38144229--38144372 Score: 120
Period size: 46 Copynumber: 3.1 Consensus size: 46
38144219 CGCATCCATA
* * *
38144229 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TATATC-CT
* * *
38144278 --CGAACTTGGACTCAACTCAACGAGTTCGGA----CATTTGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATAT--ATCC-T
*
38144321 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCT
38144368 AGTGA
1 AGTGA
38144373 CATGTCACTT
Statistics
Matches: 75, Mismatches: 10, Indels: 23
0.69 0.09 0.21
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 5 0.07
46 33 0.44
47 28 0.37
48 4 0.05
50 3 0.04
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCT
Found at i:38151178 original size:85 final size:86
Alignment explanation
Indices: 38151020--38151190 Score: 317
Period size: 85 Copynumber: 2.0 Consensus size: 86
38151010 AAGCTCAATA
38151020 ATCAAGAGAAACGAGATTCAAGTCGTGATCGAGGGAAAAACAAAGTTTACAAGGAATAGGCCCGA
1 ATCAAGAGAAACGAGATTCAAGTCGTGATCGAGGGAAAAACAAAGTTTACAAGGAATAGGCCCGA
38151085 TTGCTAATATTTTGTATCGAG
66 TTGCTAATATTTTGTATCGAG
*
38151106 ATCAAGGGAAACGAGATTCAAGTCGTGATCGAGGG-AAAACAAAGTTTACAAGGAATAGGCCCGA
1 ATCAAGAGAAACGAGATTCAAGTCGTGATCGAGGGAAAAACAAAGTTTACAAGGAATAGGCCCGA
*
38151170 TTGCTAATATTTTTTATCGAG
66 TTGCTAATATTTTGTATCGAG
38151191 GTAAGTTCGT
Statistics
Matches: 83, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
85 49 0.59
86 34 0.41
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.24
Consensus pattern (86 bp):
ATCAAGAGAAACGAGATTCAAGTCGTGATCGAGGGAAAAACAAAGTTTACAAGGAATAGGCCCGA
TTGCTAATATTTTGTATCGAG
Found at i:38153318 original size:27 final size:27
Alignment explanation
Indices: 38153282--38153368 Score: 111
Period size: 27 Copynumber: 3.2 Consensus size: 27
38153272 CGATTTGAAA
* *
38153282 AATTATTAAAATACCCCTGTAGAGTAG
1 AATTACTAAAATACCCCTGTAGGGTAG
* *
38153309 AGTTACTAAAATACCCTTGTAGGGTAG
1 AATTACTAAAATACCCCTGTAGGGTAG
* * *
38153336 AAATACCAGAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCCTGTAGGGTAG
38153363 AATTAC
1 AATTAC
38153369 CGAGATACTC
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACTAAAATACCCCTGTAGGGTAG
Found at i:38153369 original size:27 final size:27
Alignment explanation
Indices: 38153291--38153397 Score: 108
Period size: 27 Copynumber: 4.0 Consensus size: 27
38153281 AAATTATTAA
* * * *
38153291 AATACCCCTGTAGAGTAGAGTTACTAA
1 AATACCCCTGTAGGGTAGAATTACCAG
* *
38153318 AATACCCTTGTAGGGTAGAAATACCAG
1 AATACCCCTGTAGGGTAGAATTACCAG
38153345 AATACCCCTGTAGGGTAGAATTACC-G
1 AATACCCCTGTAGGGTAGAATTACCAG
* * * *
38153371 AGATACTCTTGTGGGGTAAAATTACCA
1 A-ATACCCCTGTAGGGTAGAATTACCA
38153398 TTTTGCCCCT
Statistics
Matches: 66, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
26 2 0.03
27 64 0.97
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAGAATTACCAG
Found at i:38153382 original size:54 final size:54
Alignment explanation
Indices: 38153291--38153397 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 54
38153281 AAATTATTAA
* *
38153291 AATACCCCTGTAGAGTAGAGTTACTAAAATACCCTTGTAGGGTAGAAA-TACCAG
1 AATACCCCTGTAGAGTAGAATTACCAAAATACCCTTGTAGGGTA-AAATTACCAG
* * * * *
38153345 AATACCCCTGTAGGGTAGAATTACCGAGATACTCTTGTGGGGTAAAATTACCA
1 AATACCCCTGTAGAGTAGAATTACCAAAATACCCTTGTAGGGTAAAATTACCA
38153398 TTTTGCCCCT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
53 3 0.07
54 42 0.93
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (54 bp):
AATACCCCTGTAGAGTAGAATTACCAAAATACCCTTGTAGGGTAAAATTACCAG
Found at i:38154037 original size:27 final size:26
Alignment explanation
Indices: 38154007--38154114 Score: 117
Period size: 27 Copynumber: 4.0 Consensus size: 26
38153997 ATTCTATTAA
* * *
38154007 GTGGCTTTGCCACATTATCTATTTTTG
1 GTGGCTATGCCACAATATCT-GTTTTG
38154034 GTGGCTATGCCACAAATATCTGTTTTG
1 GTGGCTATGCCAC-AATATCTGTTTTG
* *
38154061 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGT-TTTG
* * *
38154088 GTGACTCTGTCACAATATCTGTTTTG
1 GTGGCTATGCCACAATATCTGTTTTG
38154114 G
1 G
38154115 CAGCCATGTT
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
26 13 0.18
27 52 0.73
28 6 0.08
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.40
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTGTTTTG
Found at i:38154065 original size:54 final size:53
Alignment explanation
Indices: 38154007--38154114 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 53
38153997 ATTCTATTAA
* * * * *
38154007 GTGGCTTTGCCACATTATCTATTTTTGGTGGCTATGCCACAAATATCTGTTTTG
1 GTGGCTCTGCCACAATATCTATATCTGGTGACTATGCCAC-AATATCTGTTTTG
* * *
38154061 GTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATATCTGTTTTG
1 GTGGCTCTGCCACAATATCTATATCTGGTGACTATGCCACAATATCTGTTTTG
38154114 G
1 G
38154115 CAGCCATGTT
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
53 14 0.30
54 32 0.70
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.40
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTATATCTGGTGACTATGCCACAATATCTGTTTTG
Done.