Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 119 of 333
Found at i:38406226 original size:23 final size:22
Alignment explanation
Indices: 38406175--38406226 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
38406165 CCTCGTCTTT
*
38406175 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
38406197 -TCATTTTCTCTTCTTTTT-TCAAC
1 TTC-TTTTCT-TTCTTTTTCT-AAC
38406220 TTCTTTT
1 TTCTTTT
38406227 TCAAATTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 6 0.24
23 15 0.60
24 2 0.08
ACGTcount: A:0.10, C:0.21, G:0.02, T:0.67
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:38406241 original size:18 final size:18
Alignment explanation
Indices: 38406220--38406258 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
38406210 TTTTTTCAAC
* *
38406220 TTCTTTTTCAAATTTCTT
1 TTCTGTTTCAAATTCCTT
*
38406238 TTCTGTTTCACATTCCTT
1 TTCTGTTTCAAATTCCTT
38406256 TTC
1 TTC
38406259 ACTCTCAATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.13, C:0.23, G:0.03, T:0.62
Consensus pattern (18 bp):
TTCTGTTTCAAATTCCTT
Found at i:38418607 original size:13 final size:13
Alignment explanation
Indices: 38418589--38418613 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
38418579 TTTTTACTTT
38418589 CTTAGTTAATTTA
1 CTTAGTTAATTTA
38418602 CTTAGTTAATTT
1 CTTAGTTAATTT
38418614 TTAGTTTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.08, G:0.08, T:0.56
Consensus pattern (13 bp):
CTTAGTTAATTTA
Found at i:38421292 original size:21 final size:21
Alignment explanation
Indices: 38421266--38421328 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
38421256 TTGGTATTTG
38421266 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
38421287 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
38421308 GGTATTTGGTACGAATTGGTA
1 GG-AATTGGTACGAAATGGTA
38421329 ATGGTTCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 22 0.59
22 15 0.41
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:38430542 original size:30 final size:31
Alignment explanation
Indices: 38430508--38430604 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 31
38430498 AGCTCACTCC
*
38430508 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* * * * *
38430538 TAGCTCAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* *
38430568 CAGCTCAACTTT-AGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
38430598 TAGCTCA
1 TAGCTCA
38430605 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
30 47 0.92
31 4 0.08
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (31 bp):
TAGCTCAACTTTCAGCTCACGAGCTAAACCT
Found at i:38432187 original size:11 final size:12
Alignment explanation
Indices: 38432156--38432186 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
38432146 TTGAGAGAAC
38432156 TTGAAAAAGCCT
1 TTGAAAAAGCCT
*
38432168 TTGAAAAAGTCT
1 TTGAAAAAGCCT
38432180 TTGAAAA
1 TTGAAAA
38432187 GCAAAAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.45, C:0.10, G:0.16, T:0.29
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:38434479 original size:30 final size:30
Alignment explanation
Indices: 38434384--38434480 Score: 83
Period size: 30 Copynumber: 3.2 Consensus size: 30
38434374 AGCTCACTCC
*
38434384 TAGCTC-ACTTTCAACTCACGAGCTAAA-CTT
1 TAGCTCAACTTT-AGCTCACGAGCTAAAGC-T
* * * **
38434414 TAGCTCAACTTCAGCTTAGGAG-TTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAAG-CT
*
38434444 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAAGCT
38434474 TAGCTCA
1 TAGCTCA
38434481 TTTTAGTTTA
Statistics
Matches: 50, Mismatches: 13, Indels: 8
0.70 0.18 0.11
Matches are distributed among these distances:
29 2 0.04
30 40 0.80
31 8 0.16
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAAGCT
Found at i:38438263 original size:49 final size:51
Alignment explanation
Indices: 38438186--38438428 Score: 248
Period size: 49 Copynumber: 4.9 Consensus size: 51
38438176 TATTGTGAGG
* * * *
38438186 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTAGA
* * *
38438235 TCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACTC-GATAACTTCGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTAC-CAGATAACTTAGA
* * * * * *
38438286 TTACGTGTGTAGTACTAAGTGTAGGCTACTATGGGTACCCGATAACTTTGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTAGA
* * ** *
38438337 TTACATGTGTAGT-CTAAGTGCAGGCTACTA--CGTGATCAGAT-GGTTAGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGT-ACCAGATAACTTAGA
*
38438385 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
38438429 GCCTTGTCTA
Statistics
Matches: 162, Mismatches: 23, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
48 16 0.10
49 60 0.37
50 26 0.16
51 60 0.37
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (51 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTAGA
Found at i:38444161 original size:49 final size:50
Alignment explanation
Indices: 38444089--38444277 Score: 202
Period size: 50 Copynumber: 3.8 Consensus size: 50
38444079 TGAGGTCATG
* * *
38444089 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT-GGTCGCT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCACA
* * * *
38444138 TGTGTAGTACTAAGTGCAGGCTACTATAG-GTACCCGATAACTTCGATTACA
1 TGTGTAGTACTAAGTGCAGGCTACTAT-GTGTACCAGATAA-TTAGGTCACA
* ** * ** *
38444189 TGTGTAGTACTAAGTGCTGGCTACTACATGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCACA
* *
38444239 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
38444278 GCCTTGTCTA
Statistics
Matches: 113, Mismatches: 23, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
49 37 0.33
50 41 0.36
51 35 0.31
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCACA
Found at i:38444213 original size:51 final size:49
Alignment explanation
Indices: 38444089--38444271 Score: 188
Period size: 49 Copynumber: 3.7 Consensus size: 49
38444079 TGAGGTCATG
* * * *
38444089 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAATTGATCACA
*
38444138 TGTGTAGTACTAAGTGCAGGCTACTATAG-GTACCCGATAACTTCGATTACA
1 TGTGTAGTACTAAGTGCAGGCTACTAT-GTGTACCCGATAA-TT-GATCACA
* ** * * ** * *
38444189 TGTGTAGTACTAAGTGCTGGCTACTACATGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAATT-GATCACA
*
38444239 TGTGTAGTACTAAGTGCAGGCTACTATGCGTAC
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTAC
38444272 TAGATAGCCT
Statistics
Matches: 109, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
49 37 0.34
50 37 0.34
51 35 0.32
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAATTGATCACA
Found at i:38462345 original size:20 final size:20
Alignment explanation
Indices: 38462322--38462384 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
38462312 GACCTTGTCA
38462322 TAACATGTAAAATCCCTGAT
1 TAACATGTAAAATCCCTGAT
*** * *
38462342 TAAC-TGTTCGA-CCTTGTT
1 TAACATGTAAAATCCCTGAT
38462360 ATAACATGTAAAATCCCTGAT
1 -TAACATGTAAAATCCCTGAT
38462381 TAAC
1 TAAC
38462385 CATGCATATC
Statistics
Matches: 30, Mismatches: 10, Indels: 6
0.65 0.22 0.13
Matches are distributed among these distances:
18 5 0.17
19 8 0.27
20 12 0.40
21 5 0.17
ACGTcount: A:0.35, C:0.21, G:0.11, T:0.33
Consensus pattern (20 bp):
TAACATGTAAAATCCCTGAT
Found at i:38462355 original size:39 final size:39
Alignment explanation
Indices: 38462307--38462384 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
38462297 CTACAACAAA
*
38462307 TGTTTGACCTTGTCATAACATGTAAAATCCCTGATTAAC
1 TGTTCGACCTTGTCATAACATGTAAAATCCCTGATTAAC
*
38462346 TGTTCGACCTTGTTATAACATGTAAAATCCCTGATTAAC
1 TGTTCGACCTTGTCATAACATGTAAAATCCCTGATTAAC
38462385 CATGCATATC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (39 bp):
TGTTCGACCTTGTCATAACATGTAAAATCCCTGATTAAC
Found at i:38465868 original size:30 final size:30
Alignment explanation
Indices: 38465832--38465891 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
38465822 TTCCCGAGCC
* *
38465832 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATATAATTATGCAAAAGTT
* *
38465862 TAGGGGCAAAAATATAATTTTGCCAAAGTT
1 TAGGGGCAAAAATATAATTATGCAAAAGTT
38465892 CGTATTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATATAATTATGCAAAAGTT
Found at i:38481419 original size:28 final size:29
Alignment explanation
Indices: 38481379--38481433 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
38481369 CATGGGCGAT
*
38481379 GACACGGGCGTGT-CTAGGCTGTGTGAGG
1 GACACGGGCGTGTGCTAGGCCGTGTGAGG
* *
38481407 GACATGGGCGTGTGCTTGGCCGTGTGA
1 GACACGGGCGTGTGCTAGGCCGTGTGA
38481434 AAACCCTTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.13, C:0.18, G:0.45, T:0.24
Consensus pattern (29 bp):
GACACGGGCGTGTGCTAGGCCGTGTGAGG
Found at i:38483951 original size:4 final size:4
Alignment explanation
Indices: 38483942--38483973 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
38483932 TATTTTTATT
38483942 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
38483974 CTTAGTTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:38487754 original size:4 final size:4
Alignment explanation
Indices: 38487745--38487772 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
38487735 AAGTTTTATT
38487745 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA
38487773 CTTAGTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:38489913 original size:30 final size:30
Alignment explanation
Indices: 38489818--38489914 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 30
38489808 AGCTCACTCC
* *
38489818 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTT-AGCTCACGAGCTAAAGCT
* * * **
38489848 TAGCTCAACTTCAGCTTAGGAG-TTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAAG-CT
* *
38489878 CAGCTCAACTTTAGCTCACAAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAAGCT
38489908 TAGCTCA
1 TAGCTCA
38489915 TTTTAGTTTA
Statistics
Matches: 49, Mismatches: 15, Indels: 6
0.70 0.21 0.09
Matches are distributed among these distances:
29 2 0.04
30 40 0.82
31 7 0.14
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAAGCT
Found at i:38490160 original size:30 final size:30
Alignment explanation
Indices: 38490126--38490213 Score: 104
Period size: 30 Copynumber: 2.9 Consensus size: 30
38490116 CTAACTCATA
38490126 TTCAGCTCACGAGCTAAACCTTAGCTCAAC
1 TTCAGCTCACGAGCTAAACCTTAGCTCAAC
* * * * * *
38490156 TTCAGCTTAGGAGTTTAGCCTCAGCTCAAC
1 TTCAGCTCACGAGCTAAACCTTAGCTCAAC
* *
38490186 TTTAGCTCACGAGCTAAAGCTTAGCTCA
1 TTCAGCTCACGAGCTAAACCTTAGCTCA
38490214 TTTTAGTTTA
Statistics
Matches: 44, Mismatches: 14, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.27
Consensus pattern (30 bp):
TTCAGCTCACGAGCTAAACCTTAGCTCAAC
Found at i:38490221 original size:299 final size:298
Alignment explanation
Indices: 38489650--38490248 Score: 984
Period size: 299 Copynumber: 2.0 Consensus size: 298
38489640 TGAGGTTAAC
* * *
38489650 TTTGATAGAGCACACCCCGCAAACTTTATCGAGCAAGTCTTTCAAGCCGAGCAATGACATGTTGG
1 TTTGATAGAGCACACCCCGCAAACTTCATCGAACAAGTCTGTCAAGCCGAGCAATGACATGTTGG
*
38489715 CAAGCTAATCCCATATCGTTTCCAGCTCCACGAGCTCCGTCCAGCTCAAATCCAGCTTATTAGAG
66 CAAGCTAATCCCAGATCGTTTCCAGCTCCACGAGCTCCGTCCAGCTCAAATCCAGCTTATTAGAG
* *
38489780 CTCAATCCATCTTGCCTGAGCTAAACCGAGCTCACTCCTAGCTCACTTTCAACTCACGAGCTAAA
131 CTCAATCCAACTTGCCTGAGCTAAACCGAGCTCACTCCTAACTCACTTTCAACTCACGAGCTAAA
38489845 CCTTAGCTCAACTTCAGCTTAGGAGTTTAGCCTCAGCTCAACTTTAGCTCACAAGCTAAAGCTTA
196 CCTTAGCTCAACTTCAGCTTAGGAGTTTAGCCTCAGCTCAACTTTAGCTCACAAGCTAAAGCTTA
* *
38489910 GCTCATTTTAGTTTAAACTCAGTTTTTTCTTTAATGCA
261 GCTCATTTTAGTTTAAACTCAGTTTTGTCTTTAATACA
* * * *
38489948 TTTGATACGAGCACGCCTCGCGAACTTCATCGAACAAGTCTGTCAAGCCGAGCATTGACATGTTG
1 TTTGATA-GAGCACACCCCGCAAACTTCATCGAACAAGTCTGTCAAGCCGAGCAATGACATGTTG
* * * * *
38490013 GCAAGCTGATCCCAGCTCGTTTCTAGCTCCACGAGCTTCGTCCAGCTCAAATCCAGCTTATTCGA
65 GCAAGCTAATCCCAGATCGTTTCCAGCTCCACGAGCTCCGTCCAGCTCAAATCCAGCTTATTAGA
* *
38490078 GCTCAATCCAACTTGCCTGAGCTAAACTGAGCTCACTCCTAACTCA-TATTCAGCTCACGAGCTA
130 GCTCAATCCAACTTGCCTGAGCTAAACCGAGCTCACTCCTAACTCACT-TTCAACTCACGAGCTA
*
38490142 AACCTTAGCTCAACTTCAGCTTAGGAGTTTAGCCTCAGCTCAACTTTAGCTCACGAGCTAAAGCT
194 AACCTTAGCTCAACTTCAGCTTAGGAGTTTAGCCTCAGCTCAACTTTAGCTCACAAGCTAAAGCT
*
38490207 TAGCTCATTTTAGTTTAAACTCGGTTTTGTCTTTAATACA
259 TAGCTCATTTTAGTTTAAACTCAGTTTTGTCTTTAATACA
38490247 TT
1 TT
38490249 AAATAAAAAT
Statistics
Matches: 278, Mismatches: 21, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
298 8 0.03
299 270 0.97
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.29
Consensus pattern (298 bp):
TTTGATAGAGCACACCCCGCAAACTTCATCGAACAAGTCTGTCAAGCCGAGCAATGACATGTTGG
CAAGCTAATCCCAGATCGTTTCCAGCTCCACGAGCTCCGTCCAGCTCAAATCCAGCTTATTAGAG
CTCAATCCAACTTGCCTGAGCTAAACCGAGCTCACTCCTAACTCACTTTCAACTCACGAGCTAAA
CCTTAGCTCAACTTCAGCTTAGGAGTTTAGCCTCAGCTCAACTTTAGCTCACAAGCTAAAGCTTA
GCTCATTTTAGTTTAAACTCAGTTTTGTCTTTAATACA
Found at i:38491902 original size:13 final size:12
Alignment explanation
Indices: 38491858--38491891 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
38491848 ATACAAGTCA
38491858 AAAAAAAATTTC
1 AAAAAAAATTTC
38491870 AAAAAAAATTTC
1 AAAAAAAATTTC
38491882 AAAAAAAATT
1 AAAAAAAATT
38491892 CGAAAAGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.24
Consensus pattern (12 bp):
AAAAAAAATTTC
Found at i:38492841 original size:9 final size:10
Alignment explanation
Indices: 38492834--38492890 Score: 55
Period size: 11 Copynumber: 5.5 Consensus size: 10
38492824 AAGAGAAAAC
38492834 AAAGAAAAGA
1 AAAGAAAAGA
38492844 AAAGAAAAAGCA
1 AAAG-AAAAG-A
*
38492856 AAAGAAGA-A
1 AAAGAAAAGA
38492865 AAAGAAAATGA
1 AAAGAAAA-GA
38492876 AATA-AAAAGA
1 AA-AGAAAAGA
38492886 AAAGA
1 AAAGA
38492891 GAGGCAAGAG
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
9 9 0.23
10 9 0.23
11 15 0.38
12 6 0.15
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:38492857 original size:21 final size:20
Alignment explanation
Indices: 38492823--38492890 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 20
38492813 ACATTCTTGT
38492823 AAAGAGAAAA-CAAAGAAAAGA
1 AAAGA-AAAAGCAAA-AAAAGA
*
38492844 AAAGAAAAAGCAAAAGAAGAA
1 AAAGAAAAAGCAAAAAAAG-A
* *
38492865 AAAGAAAATGAAATAAAAAGA
1 AAAGAAAAAGCAA-AAAAAGA
38492886 AAAGA
1 AAAGA
38492891 GAGGCAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
20 8 0.20
21 27 0.68
22 5 0.12
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (20 bp):
AAAGAAAAAGCAAAAAAAGA
Found at i:38492858 original size:6 final size:5
Alignment explanation
Indices: 38492834--38492890 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
38492824 AAGAGAAAAC
*
38492834 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGA AAATGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA AAA-GA AA-AGA
38492881 AAAGA AAAGA
1 AAAGA AAAGA
38492891 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
4 4 0.09
5 25 0.57
6 14 0.32
7 1 0.02
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (5 bp):
AAAGA
Found at i:38492865 original size:15 final size:14
Alignment explanation
Indices: 38492834--38492890 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
38492824 AAGAGAAAAC
38492834 AAAGAAAAGAAAAGAA
1 AAAGAAAAG--AAGAA
38492850 AAAGCAAAAGAAGAA
1 AAAG-AAAAGAAGAA
*
38492865 AAAGAAAATGAAATAA
1 AAAGAAAA-G-AAGAA
38492881 AAAGAAAAGA
1 AAAGAAAAGA
38492891 GAGGCAAGAG
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
14 5 0.14
15 11 0.30
16 16 0.43
17 5 0.14
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (14 bp):
AAAGAAAAGAAGAA
Found at i:38492970 original size:11 final size:12
Alignment explanation
Indices: 38492938--38492968 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
38492928 TTGAGAGAAC
38492938 TTGAAAAAGCCT
1 TTGAAAAAGCCT
38492950 TTGAAAAAGCCT
1 TTGAAAAAGCCT
38492962 TTGAAAA
1 TTGAAAA
38492969 GCAAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:38492979 original size:12 final size:12
Alignment explanation
Indices: 38492971--38492995 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
38492961 TTTGAAAAGC
38492971 AAAAAGAAAATG
1 AAAAAGAAAATG
38492983 AAAAAGAAAATG
1 AAAAAGAAAATG
38492995 A
1 A
38492996 GATTAAGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:38495283 original size:30 final size:30
Alignment explanation
Indices: 38495249--38495345 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
38495239 AGCTCACTCC
38495249 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTCAGCTCACGAGCTAAACCT
* * * * *
38495279 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * *
38495309 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
38495339 TAGCTCA
1 TAGCTCA
38495346 TTTTAGTTTA
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:38500090 original size:23 final size:22
Alignment explanation
Indices: 38500039--38500090 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
38500029 CCTCGTCTTT
*
38500039 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
38500061 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
38500084 TTCTTTT
1 TTCTTTT
38500091 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:38510937 original size:15 final size:15
Alignment explanation
Indices: 38510909--38510942 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
38510899 TGTGATATCT
*
38510909 ATTCTGCTTGTGAGA
1 ATTCTACTTGTGAGA
*
38510924 ATTCTACTTTTGAGA
1 ATTCTACTTGTGAGA
38510939 ATTC
1 ATTC
38510943 CTACAGGTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.44
Consensus pattern (15 bp):
ATTCTACTTGTGAGA
Found at i:38511601 original size:20 final size:20
Alignment explanation
Indices: 38511578--38511637 Score: 68
Period size: 21 Copynumber: 3.0 Consensus size: 20
38511568 AGCTCCAATC
38511578 AGCTCACTTGAGCTCGATTT
1 AGCTCACTTGAGCTCGATTT
**
38511598 AGCTTGCTTGAGCTCGAATTT
1 AGCTCACTTGAGCTCG-ATTT
* *
38511619 AGCTCATTTCAGCTC-ATTT
1 AGCTCACTTGAGCTCGATTT
38511638 CTTCTTCATT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
19 4 0.12
20 14 0.42
21 15 0.45
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.38
Consensus pattern (20 bp):
AGCTCACTTGAGCTCGATTT
Found at i:38511620 original size:21 final size:20
Alignment explanation
Indices: 38511584--38511622 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
38511574 AATCAGCTCA
38511584 CTTGAGCTCGATTTAGCTTG
1 CTTGAGCTCGATTTAGCTTG
38511604 CTTGAGCTCGAATTTAGCT
1 CTTGAGCTCG-ATTTAGCT
38511623 CATTTCAGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (20 bp):
CTTGAGCTCGATTTAGCTTG
Found at i:38518328 original size:27 final size:27
Alignment explanation
Indices: 38518280--38518438 Score: 166
Period size: 27 Copynumber: 5.9 Consensus size: 27
38518270 GCGAGGCTGC
* *
38518280 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
38518307 CAGATATTGTGGTAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
38518333 CAGATATATGTGGCAAAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
38518360 TAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
38518387 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
38518414 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
38518439 GACGCTTCCT
Statistics
Matches: 112, Mismatches: 12, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
26 10 0.09
27 97 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:38518439 original size:54 final size:54
Alignment explanation
Indices: 38518280--38518441 Score: 229
Period size: 54 Copynumber: 3.0 Consensus size: 54
38518270 GCGAGGCTGC
* * * * * *
38518280 CAGATAT-TGTGACGAAGTCACCAGATACAGAT-ATTGTGGTAGAGCCACCAGAA
1 CAGATATATGTGGCAAAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGGA
*
38518333 CAGATATATGTGGCAAAGCCACCAGATTAGATAATTGTGGCATAGCCACCAGGA
1 CAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
*
38518387 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
1 CAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
38518441 C
1 C
38518442 GCTTCCTCCA
Statistics
Matches: 98, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
53 11 0.11
54 87 0.89
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.20
Consensus pattern (54 bp):
CAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGGA
Found at i:38520483 original size:30 final size:30
Alignment explanation
Indices: 38520398--38520494 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
38520388 TAAACTAAAA
* *
38520398 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
* * * * * *
38520428 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
38520458 TGAGCTAAGGTTTAGCTCGTGAGCTGAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
38520487 ATGAGCTA
1 -TGAGCTA
38520495 GGAGTGAGCT
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
Found at i:38522672 original size:12 final size:12
Alignment explanation
Indices: 38522657--38522687 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
38522647 TTCTTTTTGC
38522657 TTTTCAAAGGCT
1 TTTTCAAAGGCT
38522669 TTTTCAAAGGCT
1 TTTTCAAAGGCT
38522681 TTTTCAA
1 TTTTCAA
38522688 GTTCTCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:38522801 original size:16 final size:16
Alignment explanation
Indices: 38522733--38522802 Score: 65
Period size: 16 Copynumber: 4.4 Consensus size: 16
38522723 GCCTCTTGCC
38522733 TCTCTTTTCTTTTTAT
1 TCTCTTTTCTTTTTAT
* *
38522749 GTC-ATTTTCTTTTTCT
1 -TCTCTTTTCTTTTTAT
*
38522765 TCT-TTTGCTTTTTAT
1 TCTCTTTTCTTTTTAT
*
38522780 TTTCTTTTCTTTGTT-T
1 TCTCTTTTCTTT-TTAT
38522796 TCTCTTT
1 TCTCTTT
38522803 ACAAAAATGT
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
15 14 0.33
16 25 0.58
17 4 0.09
ACGTcount: A:0.04, C:0.17, G:0.04, T:0.74
Consensus pattern (16 bp):
TCTCTTTTCTTTTTAT
Found at i:38522803 original size:25 final size:26
Alignment explanation
Indices: 38522752--38522803 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
38522742 TTTTTATGTC
*
38522752 ATTTTCTTTTTCTTCTTTTGCTTTTT
1 ATTTTCTTTTTCTTCTTTTGCTCTTT
*
38522778 ATTTTC-TTTTCTT-TGTTTTCTCTTT
1 ATTTTCTTTTTCTTCT-TTTGCTCTTT
38522803 A
1 A
38522804 CAAAAATGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 1 0.04
25 16 0.70
26 6 0.26
ACGTcount: A:0.06, C:0.15, G:0.04, T:0.75
Consensus pattern (26 bp):
ATTTTCTTTTTCTTCTTTTGCTCTTT
Found at i:38525443 original size:30 final size:30
Alignment explanation
Indices: 38525358--38525454 Score: 99
Period size: 30 Copynumber: 3.2 Consensus size: 30
38525348 TAAACTAAAA
*
38525358 TGAGCTAA-GCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGC-TTAGCTCGTGAGCTGAAGT
* ** * * *
38525388 TGAGCTGAGGCGAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGCTTAGCTCGTGAGCTGAAGT
38525418 TGAGCTAAGGCTTAGCTCGTGAGCTGAA-T
1 TGAGCTAAGGCTTAGCTCGTGAGCTGAAGT
38525447 ATGAGCTA
1 -TGAGCTA
38525455 GGAGTGAGCT
Statistics
Matches: 52, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
29 1 0.02
30 49 0.94
31 2 0.04
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (30 bp):
TGAGCTAAGGCTTAGCTCGTGAGCTGAAGT
Found at i:38527182 original size:15 final size:15
Alignment explanation
Indices: 38527159--38527218 Score: 68
Period size: 15 Copynumber: 4.0 Consensus size: 15
38527149 GTATCGTATC
*
38527159 TTGGGTTTCTTTATT
1 TTGGATTTCTTTATT
38527174 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
* *
38527189 TTGGGTTT-TTCTATC
1 TTGGATTTCTT-TATT
*
38527204 TTGGATTTATTTATT
1 TTGGATTTCTTTATT
38527219 CGGTTTTCTT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
14 2 0.05
15 34 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.07, G:0.17, T:0.65
Consensus pattern (15 bp):
TTGGATTTCTTTATT
Found at i:38527195 original size:30 final size:30
Alignment explanation
Indices: 38527159--38527218 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
38527149 GTATCGTATC
* *
38527159 TTGGGTTTCTT-TATTTTGGATTTCTTTATT
1 TTGGGTTT-TTCTATCTTGGATTTATTTATT
38527189 TTGGGTTTTTCTATCTTGGATTTATTTATT
1 TTGGGTTTTTCTATCTTGGATTTATTTATT
38527219 CGGTTTTCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.12, C:0.07, G:0.17, T:0.65
Consensus pattern (30 bp):
TTGGGTTTTTCTATCTTGGATTTATTTATT
Found at i:38529489 original size:50 final size:49
Alignment explanation
Indices: 38529368--38529542 Score: 183
Period size: 50 Copynumber: 3.5 Consensus size: 49
38529358 GAGGTCGCAC
* * * * * *
38529368 GTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAAAACTGT-GATCACGT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTA--C-TAGACTATAGGTCACGT
* *
38529419 GTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGTGAGGTCACGT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGACT-AT-AGGTCACGT
* * * *
38529469 GTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGACTATTGGTCGCAT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGACTATAGGTCACGT
38529518 GTGTAGTACTAAGTGCAGGCTACTA
1 GTGTAGTACTAAGTGCAGGCTACTA
38529543 TGCGTACCAG
Statistics
Matches: 107, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
47 1 0.01
48 4 0.04
49 30 0.28
50 42 0.39
51 30 0.28
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (49 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGACTATAGGTCACGT
Found at i:38532520 original size:12 final size:11
Alignment explanation
Indices: 38532479--38532519 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
38532469 AAAAAATTAG
38532479 AAAGAAAAAGA
1 AAAGAAAAAGA
38532490 AAAGAAAACAGA
1 AAAGAAAA-AGA
*
38532502 AAAGAATAAAGG
1 AAAGAA-AAAGA
38532514 AAAGAA
1 AAAGAA
38532520 TGAGGTAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
11 8 0.30
12 17 0.63
13 2 0.07
ACGTcount: A:0.76, C:0.02, G:0.20, T:0.02
Consensus pattern (11 bp):
AAAGAAAAAGA
Found at i:38535467 original size:39 final size:39
Alignment explanation
Indices: 38535413--38535487 Score: 150
Period size: 39 Copynumber: 1.9 Consensus size: 39
38535403 GTATCGTTCA
38535413 ATTCACTTTTGAAATGAAGTTGATGGAAAAATAGGATGG
1 ATTCACTTTTGAAATGAAGTTGATGGAAAAATAGGATGG
38535452 ATTCACTTTTGAAATGAAGTTGATGGAAAAATAGGA
1 ATTCACTTTTGAAATGAAGTTGATGGAAAAATAGGA
38535488 CGGAAGCTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.40, C:0.05, G:0.24, T:0.31
Consensus pattern (39 bp):
ATTCACTTTTGAAATGAAGTTGATGGAAAAATAGGATGG
Found at i:38537360 original size:14 final size:14
Alignment explanation
Indices: 38537313--38537360 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
38537303 GTACGAATGG
*
38537313 AATGGTAGGAACGA
1 AATGGTAGGAACAA
*
38537327 AAGGGTAGGAACAA
1 AATGGTAGGAACAA
*
38537341 AATGGTATGAACAA
1 AATGGTAGGAACAA
*
38537355 ATTGGT
1 AATGGT
38537361 CGGTTTAGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (14 bp):
AATGGTAGGAACAA
Found at i:38542923 original size:9 final size:9
Alignment explanation
Indices: 38542892--38542944 Score: 72
Period size: 9 Copynumber: 5.8 Consensus size: 9
38542882 ATAAATCACT
38542892 TTTTTTTCGA
1 TTTTTTT-GA
*
38542902 TTTATTTTTA
1 TTT-TTTTGA
38542912 TTTTTTTGA
1 TTTTTTTGA
38542921 TTTTTTTGA
1 TTTTTTTGA
38542930 TTTTTTT-A
1 TTTTTTTGA
38542938 TTTTTTT
1 TTTTTTT
38542945 AACTTGTATA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
8 8 0.20
9 21 0.52
10 7 0.17
11 4 0.10
ACGTcount: A:0.11, C:0.02, G:0.06, T:0.81
Consensus pattern (9 bp):
TTTTTTTGA
Found at i:38543336 original size:14 final size:14
Alignment explanation
Indices: 38543298--38543344 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
38543288 GTACGAATGG
*
38543298 AATGGTAGGAACGA
1 AATGGTAGGAACAA
38543312 AA-GGTAGGAACAA
1 AATGGTAGGAACAA
*
38543325 AATGGTATGAACAA
1 AATGGTAGGAACAA
*
38543339 ATTGGT
1 AATGGT
38543345 CGGTTTAGGT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 12 0.41
14 17 0.59
ACGTcount: A:0.45, C:0.06, G:0.30, T:0.19
Consensus pattern (14 bp):
AATGGTAGGAACAA
Found at i:38547858 original size:6 final size:5
Alignment explanation
Indices: 38547834--38547898 Score: 62
Period size: 5 Copynumber: 12.4 Consensus size: 5
38547824 AAGAGAAAAC
*
38547834 AAAGA AAAGA AAAGAA AAAGCA AAAGCA AAAGA AGA-A AAAGA AAATGA
1 AAAGA AAAGA AAAG-A AAAG-A AAAG-A AAAGA AAAGA AAAGA AAA-GA
38547882 AATA-A AAAGA AAAGA AA
1 AA-AGA AAAGA AAAGA AA
38547899 GGCAAGAGGC
Statistics
Matches: 52, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
4 4 0.08
5 27 0.52
6 20 0.38
7 1 0.02
ACGTcount: A:0.77, C:0.03, G:0.17, T:0.03
Consensus pattern (5 bp):
AAAGA
Found at i:38547864 original size:12 final size:10
Alignment explanation
Indices: 38547834--38547898 Score: 62
Period size: 11 Copynumber: 6.2 Consensus size: 10
38547824 AAGAGAAAAC
38547834 AAAGAAAAGA
1 AAAGAAAAGA
38547844 AAAGAAAAAGCA
1 AAAG-AAAAG-A
38547856 AAAGCAAAAGA
1 AAAG-AAAAGA
*
38547867 AGA-AAAAGA
1 AAAGAAAAGA
38547876 AAATGAAATA-A
1 AAA-GAAA-AGA
38547887 AAAGAAAAGA
1 AAAGAAAAGA
38547897 AA
1 AA
38547899 GGCAAGAGGC
Statistics
Matches: 46, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
9 9 0.20
10 11 0.24
11 15 0.33
12 11 0.24
ACGTcount: A:0.77, C:0.03, G:0.17, T:0.03
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:38547983 original size:12 final size:12
Alignment explanation
Indices: 38547975--38547999 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
38547965 TTTGAAAAGC
38547975 AAAAAGAAAATG
1 AAAAAGAAAATG
38547987 AAAAAGAAAATG
1 AAAAAGAAAATG
38547999 A
1 A
38548000 GATTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:38547996 original size:18 final size:18
Alignment explanation
Indices: 38547969--38548011 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
38547959 AAATCCTTTG
38547969 AAAAGCAAAAAGAAAATGA
1 AAAAG-AAAAAGAAAATGA
* * *
38547988 AAAAGAAAATGAGATTGA
1 AAAAGAAAAAGAAAATGA
38548006 AAAAGA
1 AAAAGA
38548012 GAACGAAAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.70, C:0.02, G:0.19, T:0.09
Consensus pattern (18 bp):
AAAAGAAAAAGAAAATGA
Found at i:38548009 original size:30 final size:30
Alignment explanation
Indices: 38547975--38548055 Score: 92
Period size: 30 Copynumber: 2.7 Consensus size: 30
38547965 TTTGAAAAGC
*
38547975 AAAAAGAAAATGAAAAAGAAAATGAGATTG
1 AAAAAGAAAATGAAAAAGAAAATGAGAGTG
* * **
38548005 AAAAAGAGAACG-AAAAGAACTTTGAGAGTG
1 AAAAAGAAAATGAAAAAGAA-AATGAGAGTG
*
38548035 AAAAAGAAGATGAAAAAGAAA
1 AAAAAGAAAATGAAAAAGAAA
38548056 TTGAAACAAA
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
29 7 0.17
30 26 0.65
31 7 0.17
ACGTcount: A:0.64, C:0.02, G:0.22, T:0.11
Consensus pattern (30 bp):
AAAAAGAAAATGAAAAAGAAAATGAGAGTG
Found at i:38548910 original size:22 final size:22
Alignment explanation
Indices: 38548880--38548923 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
38548870 TTTGGTATTT
38548880 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
38548902 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
38548924 TGGTTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.36, T:0.25
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:38554065 original size:20 final size:20
Alignment explanation
Indices: 38554042--38554088 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
38554032 GGGTTAAGAT
*
38554042 TGAGCTGAATTGAGCTTGAA
1 TGAGCTGAATTGAGCTCGAA
* * *
38554062 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAA
38554082 TGAGCTG
1 TGAGCTG
38554089 GAAACGAGCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAA
Found at i:38555940 original size:12 final size:12
Alignment explanation
Indices: 38555925--38555955 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
38555915 TTCTTTTTGC
38555925 TTTTCAAAGGCT
1 TTTTCAAAGGCT
38555937 TTTTCAAAGGCT
1 TTTTCAAAGGCT
38555949 TTTTCAA
1 TTTTCAA
38555956 GTTCTCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:38556013 original size:5 final size:5
Alignment explanation
Indices: 38556003--38556058 Score: 53
Period size: 5 Copynumber: 11.0 Consensus size: 5
38555993 CTCTTGCCTC
* *
38556003 TCTTT TCTTT T-ATT TCATTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCTTT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
38556049 TCTTT TCTTT
1 TCTTT TCTTT
38556059 ATTTTCTCTT
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
4 6 0.14
5 26 0.62
6 6 0.14
7 4 0.10
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:38556031 original size:21 final size:20
Alignment explanation
Indices: 38556005--38556065 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 20
38555995 CTTGCCTCTC
38556005 TTTTCTTTTATTTCATTTTCT
1 TTTTCTTTT-TTTCATTTTCT
* *
38556026 TTTTCTTCTTTTGCTTTTTC-
1 TTTTCTT-TTTTTCATTTTCT
38556046 TTTTCTTTTCTTT-ATTTTCT
1 TTTTCTTTT-TTTCATTTTCT
38556066 CTTTACAAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
19 7 0.21
20 9 0.27
21 15 0.45
22 2 0.06
ACGTcount: A:0.05, C:0.16, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTTCTTTTTTTCATTTTCT
Found at i:38556042 original size:15 final size:14
Alignment explanation
Indices: 38556003--38556058 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 14
38555993 CTCTTGCCTC
38556003 TCTTTTCTTTTAT-T
1 TCTTTTCTTTT-TCT
38556017 TCATTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
38556032 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTC--T
38556049 TCTTTTCTTT
1 TCTTTTCTTT
38556059 ATTTTCTCTT
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 7 0.19
15 19 0.51
16 4 0.11
17 7 0.19
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:38556068 original size:21 final size:20
Alignment explanation
Indices: 38556001--38556069 Score: 70
Period size: 20 Copynumber: 3.4 Consensus size: 20
38555991 GCCTCTTGCC
38556001 TCTCTTTTCTTTTATTTCATTT
1 TCTCTTTTCTTTT-TTT-ATTT
**
38556023 TCT-TTTTCTTCTTTTGCTTT
1 TCTCTTTTCTT-TTTTTATTT
38556043 T-TCTTTTCTTTTCTTTATTT
1 TCTCTTTTCTTTT-TTTATTT
38556063 TCTCTTT
1 TCTCTTT
38556070 ACAAGAATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
19 3 0.08
20 17 0.44
21 14 0.36
22 5 0.13
ACGTcount: A:0.04, C:0.19, G:0.01, T:0.75
Consensus pattern (20 bp):
TCTCTTTTCTTTTTTTATTT
Found at i:38568917 original size:20 final size:19
Alignment explanation
Indices: 38568894--38568958 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
38568884 AAGCTCAAAC
38568894 GAGCTAAAGTAAGCTAAATT
1 GAGCTAAAGT-AGCTAAATT
38568914 GAGCTCAAACG-AGCTAAATT
1 GAGCT-AAA-GTAGCTAAATT
* * * *
38568934 AAGCTCATGTGAGCTAAATC
1 GAGCTAAAGT-AGCTAAATT
38568954 GAGCT
1 GAGCT
38568959 GGGAAAAACT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 30 0.83
21 3 0.08
22 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (19 bp):
GAGCTAAAGTAGCTAAATT
Found at i:38571280 original size:29 final size:29
Alignment explanation
Indices: 38571247--38571306 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
38571237 ATAAGCAAAC
*
38571247 CTACAAAAACTTTATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
*
38571276 CTACATAAACTTCATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
38571305 CT
1 CT
38571307 TTGAATCCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.28
Consensus pattern (29 bp):
CTACAAAAACTTCATATCCATAAACCCAT
Found at i:38571299 original size:15 final size:15
Alignment explanation
Indices: 38571253--38571300 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
38571243 AAACCTACAA
*
38571253 AAACTTTATATCCAT
1 AAACTTCATATCCAT
* * *
38571268 AAAC-CCATCTACAT
1 AAACTTCATATCCAT
38571282 AAACTTCATATCCAT
1 AAACTTCATATCCAT
38571297 AAAC
1 AAAC
38571301 CCATCTTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (15 bp):
AAACTTCATATCCAT
Found at i:38571646 original size:11 final size:11
Alignment explanation
Indices: 38571630--38571671 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
38571620 ATAAATCACT
38571630 TTTTTTTTCAA
1 TTTTTTTTCAA
*
38571641 TTTTTTTTGAA
1 TTTTTTTTCAA
*
38571652 TTTTTTTTGAA
1 TTTTTTTTCAA
38571663 TTTTTTTTC
1 TTTTTTTTC
38571672 GGTTTTTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.14, C:0.05, G:0.05, T:0.76
Consensus pattern (11 bp):
TTTTTTTTCAA
Found at i:38579772 original size:42 final size:42
Alignment explanation
Indices: 38579710--38579806 Score: 142
Period size: 42 Copynumber: 2.3 Consensus size: 42
38579700 AGATTATGAG
* * * *
38579710 AGAAAATGAGAGGATTTTGAATGGAATCGAGAGAAGAAACAA
1 AGAAAATGAGAGAATCTTGAATGAAATCGAGAAAAGAAACAA
38579752 AGAAAATGAGAGAATCTTGAATGAAATCGAGAAAAGAAACAA
1 AGAAAATGAGAGAATCTTGAATGAAATCGAGAAAAGAAACAA
*
38579794 AG-AAATGAAAGAA
1 AGAAAATGAGAGAA
38579807 AAACAAAAAG
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
41 10 0.20
42 40 0.80
ACGTcount: A:0.56, C:0.05, G:0.25, T:0.14
Consensus pattern (42 bp):
AGAAAATGAGAGAATCTTGAATGAAATCGAGAAAAGAAACAA
Found at i:38579833 original size:18 final size:18
Alignment explanation
Indices: 38579810--38579859 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
38579800 GAAAGAAAAA
*
38579810 CAAAAAGAGATTGAGAGT
1 CAAAAAGAGAATGAGAGT
* *
38579828 CAAAAAGAAAATGAGATT
1 CAAAAAGAGAATGAGAGT
*
38579846 GAAAAAGAGAATGA
1 CAAAAAGAGAATGA
38579860 AAAAGAGTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.58, C:0.04, G:0.24, T:0.14
Consensus pattern (18 bp):
CAAAAAGAGAATGAGAGT
Found at i:38579913 original size:18 final size:19
Alignment explanation
Indices: 38579877--38579915 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
38579867 TTTGAGAGAG
*
38579877 AAAAAGAATGTGAACAAGA
1 AAAAAGAATGTGAAAAAGA
*
38579896 AAAAAGAGTG-GAAAAAGA
1 AAAAAGAATGTGAAAAAGA
38579914 AA
1 AA
38579916 TTGAGATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.67, C:0.03, G:0.23, T:0.08
Consensus pattern (19 bp):
AAAAAGAATGTGAAAAAGA
Found at i:38580377 original size:8 final size:8
Alignment explanation
Indices: 38580364--38580389 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
38580354 TTAAGGTGAA
38580364 AGATGGAT
1 AGATGGAT
38580372 AGATGGAT
1 AGATGGAT
38580380 AGATGGAT
1 AGATGGAT
38580388 AG
1 AG
38580390 GTGAACGCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.38, T:0.23
Consensus pattern (8 bp):
AGATGGAT
Found at i:38581544 original size:30 final size:30
Alignment explanation
Indices: 38581510--38581606 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 30
38581500 TAAACTAAAA
38581510 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * * *
38581540 TGAGCCGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAG-CTAAGCTTTAGCTCGTGAGCTAAAGT
* *
38581570 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
38581600 TGAGCTA
1 TGAGCTA
38581607 GGAGTGAGCT
Statistics
Matches: 48, Mismatches: 16, Indels: 6
0.69 0.23 0.09
Matches are distributed among these distances:
29 3 0.06
30 38 0.79
31 7 0.15
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.27
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:38586832 original size:12 final size:11
Alignment explanation
Indices: 38586800--38586829 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
38586790 ATTGTAGATT
38586800 AAAAAAAATTG
1 AAAAAAAATTG
38586811 AAAAAAAATTG
1 AAAAAAAATTG
38586822 AAAAAAAA
1 AAAAAAAA
38586830 ATTTGCATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (11 bp):
AAAAAAAATTG
Found at i:38593782 original size:15 final size:15
Alignment explanation
Indices: 38593762--38593809 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
38593752 TCAAAGGTGG
38593762 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
38593777 GTTTATGTAGATGGA
1 GTTTATGGATATGAA
*
38593792 -TTTATGGATATAAA
1 GTTTATGGATATGAA
38593806 GTTT
1 GTTT
38593810 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:38595450 original size:40 final size:40
Alignment explanation
Indices: 38595406--38595706 Score: 386
Period size: 40 Copynumber: 7.7 Consensus size: 40
38595396 GCTCCTCGTT
* * *
38595406 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
38595446 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
38595486 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
38595525 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
38595565 CAAATGCCTTC-GGACTT-ACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
38595603 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * *
38595642 CAAATGCCTT-TGGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TTAGTAAC-TCGCA
*
38595683 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
38595707 CAGCATTCAA
Statistics
Matches: 236, Mismatches: 16, Indels: 19
0.87 0.06 0.07
Matches are distributed among these distances:
38 37 0.16
39 89 0.38
40 101 0.43
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:38595517 original size:79 final size:79
Alignment explanation
Indices: 38595406--38595706 Score: 398
Period size: 79 Copynumber: 3.8 Consensus size: 79
38595396 GCTCCTCGTT
* * *
38595406 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTC-GGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
38595470 GATTTAGTAACTCGCA
64 GATTTAGTAACTCGCA
*
38595486 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGTACAAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
38595551 TTTAGTAACTCGCA
66 TTTAGTAACTCGCA
*
38595565 CAAATGCCTTCGGACTT-ACCCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* *
38595628 ATTAGTATCTCGCA
66 TTTAGTAACTCGCA
* ** * * *
38595642 CAAATGCCTTTGGATCTTAGTCCGGATATT-GTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGA-CTTAACCCGGAT-TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCC
38595704 GGA
63 GGA
38595707 CAGCATTCAA
Statistics
Matches: 202, Mismatches: 13, Indels: 13
0.89 0.06 0.06
Matches are distributed among these distances:
77 35 0.17
78 46 0.23
79 101 0.50
80 20 0.10
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TTTAGTAACTCGCA
Found at i:38595667 original size:117 final size:119
Alignment explanation
Indices: 38595406--38595706 Score: 391
Period size: 117 Copynumber: 2.6 Consensus size: 119
38595396 GCTCCTCGTT
* * * *
38595406 CAAATGCCTTCGGGACATAGCCCGGTTA-TAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAACCCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTT-ACCCG
* *
38595470 GATTTAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGTA
65 GATTTAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGAATTAGTAACTCGCA
38595525 CAAATGCCTTCGGGACTTAACCCGGAT-TTAGTAACTCGCACAAATGCCTTC-GGACTTACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTACCCGG
* * *
38595588 ATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
66 ATTTAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGAATTAGTAACTCGCA
* ** * *
38595642 CAAATGCCTT-TGGATCTTAGTCCGGATATT-GTCACTTAGCAC-AA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGA-CTTAACCCGGATATTAGTAAC-TCGCACAAATGCCTTCGGGACTTA-CC
38595703 CGGA
63 CGGA
38595707 CAGCATTCAA
Statistics
Matches: 162, Mismatches: 14, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
116 9 0.06
117 88 0.54
118 19 0.12
119 46 0.28
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (119 bp):
CAAATGCCTTCGGGACTTAACCCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTACCCGG
ATTTAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGAATTAGTAACTCGCA
Found at i:38603421 original size:40 final size:40
Alignment explanation
Indices: 38603377--38603597 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
38603367 GCTCCTCGTT
* *
38603377 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAATTCGCA
* * *
38603417 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAATTCGCA
*
38603457 CAAATGCCTTCGGG-CTTAGCCCGGAT-TAGT-ATCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAATTCGCA
38603494 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAAT-TCGCA
* * * *
38603533 CAAATGCCTTC-GGATCTTAGTCCGGATATTGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-AATTCGCA
38603574 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
38603598 CACATTCAAA
Statistics
Matches: 158, Mismatches: 14, Indels: 19
0.83 0.07 0.10
Matches are distributed among these distances:
37 30 0.19
38 12 0.08
39 42 0.27
40 67 0.42
41 6 0.04
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAATTCGCA
Found at i:38603532 original size:76 final size:79
Alignment explanation
Indices: 38603377--38603597 Score: 263
Period size: 76 Copynumber: 2.8 Consensus size: 79
38603367 GCTCCTCGTT
* * *
38603377 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAATCCGCACAAATGCCTTCGGGACTTAACCCGG
*
38603442 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
*
38603457 CAAATGCCTTCGGGCTTAGCCCGGAT-TAGT-ATCCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGATATAGTAATCCGCACAAATGCCTTCGGGACTTAACCCGGA
*
38603519 ATTAGTATCTCGCA
66 ATTAGTAACTCGCA
* * * * ** *
38603533 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGT-AATCCGCACAAATGCCTTCGGGACTTAACCCG
38603596 GA
64 GA
38603598 CACATTCAAA
Statistics
Matches: 124, Mismatches: 12, Indels: 11
0.84 0.08 0.07
Matches are distributed among these distances:
76 35 0.28
77 31 0.25
78 16 0.13
79 23 0.19
80 19 0.15
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAATCCGCACAAATGCCTTCGGGACTTAACCCGGA
ATTAGTAACTCGCA
Found at i:38603558 original size:116 final size:117
Alignment explanation
Indices: 38603377--38603597 Score: 285
Period size: 116 Copynumber: 1.9 Consensus size: 117
38603367 GCTCCTCGTT
*
38603377 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
*
38603442 AT-TTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGATTAGTATCCGCA
66 ATATT-GTAACTTAGCAC-AA-GCCTTCGGGACTTAGCCCGGATTAGTATCCGCA
* **
38603494 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
*
38603555 CGGATATTGTCACTTAGCACAAGCCTTCGGGACTTAGCCCGGA
63 CGGATATTGTAACTTAGCACAAGCCTTCGGGACTTAGCCCGGA
38603598 CACATTCAAA
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
115 15 0.16
116 56 0.61
117 21 0.23
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (117 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATTGTAACTTAGCACAAGCCTTCGGGACTTAGCCCGGATTAGTATCCGCA
Found at i:38616997 original size:18 final size:18
Alignment explanation
Indices: 38616918--38617011 Score: 131
Period size: 18 Copynumber: 5.4 Consensus size: 18
38616908 CAAGGTCACG
*
38616918 ATCAATAGCGTCACTATC
1 ATCAATATCGTCACTATC
* *
38616936 ATCAATAGCGTCACTAGC
1 ATCAATATCGTCACTATC
*
38616954 ATCAATATCGTCACTAGC
1 ATCAATATCGTCACTATC
38616972 ATCAATATCGTCACTATC
1 ATCAATATCGTCACTATC
38616990 ATCAATATCG--A-TATC
1 ATCAATATCGTCACTATC
38617005 ATCAATA
1 ATCAATA
38617012 AGAAAACCTT
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.15
16 1 0.01
18 61 0.84
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.29
Consensus pattern (18 bp):
ATCAATATCGTCACTATC
Found at i:38616998 original size:9 final size:9
Alignment explanation
Indices: 38616918--38616998 Score: 54
Period size: 9 Copynumber: 9.0 Consensus size: 9
38616908 CAAGGTCACG
*
38616918 ATCAATAGC
1 ATCAATATC
* *
38616927 GTCACTATC
1 ATCAATATC
*
38616936 ATCAATAGC
1 ATCAATATC
* * *
38616945 GTCACTAGC
1 ATCAATATC
38616954 ATCAATATC
1 ATCAATATC
* * *
38616963 GTCACTAGC
1 ATCAATATC
38616972 ATCAATATC
1 ATCAATATC
* *
38616981 GTCACTATC
1 ATCAATATC
38616990 ATCAATATC
1 ATCAATATC
38616999 GATATCATCA
Statistics
Matches: 51, Mismatches: 21, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.35, C:0.27, G:0.10, T:0.28
Consensus pattern (9 bp):
ATCAATATC
Found at i:38619399 original size:21 final size:21
Alignment explanation
Indices: 38619369--38619457 Score: 90
Period size: 21 Copynumber: 4.1 Consensus size: 21
38619359 CTCACAAAGA
* *
38619369 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTAGAC
* *
38619389 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
38619410 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
38619431 AAAAAGAAACGAAGTGACTTAGAC
1 AAAAAG--A-GAAGTAACTTAGAC
38619455 AAA
1 AAA
38619458 TCTTTTTTGT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
20 6 0.10
21 36 0.62
23 1 0.02
24 15 0.26
ACGTcount: A:0.54, C:0.10, G:0.24, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTAGAC
Found at i:38619450 original size:24 final size:21
Alignment explanation
Indices: 38619369--38619437 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
38619359 CTCACAAAGA
* * *
38619369 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTGGAC
*
38619389 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
38619410 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
38619431 AAAAAGA
1 AAAAAGA
38619438 AACGAAGTGA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.55, C:0.09, G:0.25, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTGGAC
Found at i:38623619 original size:14 final size:14
Alignment explanation
Indices: 38623600--38623628 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
38623590 TACAATATAT
38623600 ATAAGAATTATACG
1 ATAAGAATTATACG
38623614 ATAAGAATTATACG
1 ATAAGAATTATACG
38623628 A
1 A
38623629 ATCCATCTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.28
Consensus pattern (14 bp):
ATAAGAATTATACG
Found at i:38626418 original size:13 final size:15
Alignment explanation
Indices: 38626393--38626432 Score: 66
Period size: 13 Copynumber: 2.8 Consensus size: 15
38626383 TATTTTATTA
38626393 AATAAATATTAAATT
1 AATAAATATTAAATT
38626408 AA-AAA-ATTAAATT
1 AATAAATATTAAATT
38626421 AATAAATATTAA
1 AATAAATATTAA
38626433 TAAATTAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 10 0.43
14 6 0.26
15 7 0.30
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AATAAATATTAAATT
Found at i:38639017 original size:27 final size:26
Alignment explanation
Indices: 38638979--38639061 Score: 120
Period size: 27 Copynumber: 3.3 Consensus size: 26
38638969 TGCTAGCAGG
38638979 CTTCGTGCCGGTGATGTGTATTCGGGC
1 CTTCGTGCCGGTGATGTGTATTC-GGC
38639006 CTTCGTGCCGGTGATGTGTA-TCGGC
1 CTTCGTGCCGGTGATGTGTATTCGGC
*
38639031 CTTCGTGCAGGTGA--TGTATTCGGC
1 CTTCGTGCCGGTGATGTGTATTCGGC
38639055 C-TCGTGC
1 CTTCGTGC
38639062 TACTAGGCTT
Statistics
Matches: 54, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
23 10 0.19
24 6 0.11
25 16 0.30
26 2 0.04
27 20 0.37
ACGTcount: A:0.08, C:0.24, G:0.35, T:0.33
Consensus pattern (26 bp):
CTTCGTGCCGGTGATGTGTATTCGGC
Found at i:38639037 original size:25 final size:25
Alignment explanation
Indices: 38638979--38639061 Score: 116
Period size: 25 Copynumber: 3.3 Consensus size: 25
38638969 TGCTAGCAGG
38638979 CTTCGTGCCGGTGATGTGTATTCGGGC
1 CTTCGTGCCGGTGATGTGTA-TC-GGC
38639006 CTTCGTGCCGGTGATGTGTATCGGC
1 CTTCGTGCCGGTGATGTGTATCGGC
* *
38639031 CTTCGTGCAGGTGATGTAT-TCGGC
1 CTTCGTGCCGGTGATGTGTATCGGC
38639055 C-TCGTGC
1 CTTCGTGC
38639062 TACTAGGCTT
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
23 6 0.11
24 6 0.11
25 20 0.37
26 2 0.04
27 20 0.37
ACGTcount: A:0.08, C:0.24, G:0.35, T:0.33
Consensus pattern (25 bp):
CTTCGTGCCGGTGATGTGTATCGGC
Found at i:38639131 original size:43 final size:42
Alignment explanation
Indices: 38639031--38639282 Score: 322
Period size: 43 Copynumber: 6.0 Consensus size: 42
38639021 GTGTATCGGC
38639031 CTTCGTGCAGGTGA--TGTATTC-GGCC-TCGTG-CTA-CTAGG
1 CTTCGTGC-GGTGATGTGTATTCGGGCCTTCGTGCCTAGC-AGG
38639069 CTTC-TGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
1 CTTCGTG-CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
* * * *
38639111 CTTCTTGCCAGCGATGTGTATTCAGGCCTTCGTGCCTAGCAGG
1 CTTCGTG-CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
*
38639154 CTTCGTGCGGTGATGTGTATTCGAGCCTTCG-GCCTAGCAGG
1 CTTCGTGCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
* *
38639195 CTTCGTGCTGCTGATGTCTATTCGGGCCTTCGTGCCTAGCAGG
1 CTTCGTGC-GGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
*
38639238 CTTCGTGTCGGTGATGTGTATTCGGACCTTCGTGCCTAGCAGG
1 CTTCGTG-CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
38639281 CT
1 CT
38639283 ATGATGCTGG
Statistics
Matches: 189, Mismatches: 14, Indels: 17
0.86 0.06 0.08
Matches are distributed among these distances:
37 7 0.04
38 5 0.03
39 7 0.04
40 4 0.02
41 23 0.12
42 50 0.26
43 92 0.49
44 1 0.01
ACGTcount: A:0.12, C:0.26, G:0.31, T:0.31
Consensus pattern (42 bp):
CTTCGTGCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
Found at i:38639217 original size:84 final size:83
Alignment explanation
Indices: 38639031--38639282 Score: 331
Period size: 84 Copynumber: 3.0 Consensus size: 83
38639021 GTGTATCGGC
*
38639031 CTTCGTGCAGGTGATG-TATTCGGCC-TCGTG-CTA-CTAGGCTTC-TGCCGGTGATGTGTATTC
1 CTTCGTGCAGCTGATGTTATTCGGCCTTCGTGCCTAGC-AGGCTTCGTGCCGGTGATGTGTATTC
38639091 GGGCCTTCGTGCCTAGCAGG
65 -GGCCTTCGTGCCTAGCAGG
*
38639111 CTTCTTGCCAGC-GATGTGTATTCAGGCCTTCGTGCCTAGCAGGCTTCGTG-CGGTGATGTGTAT
1 CTTCGTG-CAGCTGATGT-TATTC-GGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTAT
38639174 TCGAGCCTTCG-GCCTAGCAGG
63 TCG-GCCTTCGTGCCTAGCAGG
* *
38639195 CTTCGTGCTGCTGATGTCTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGTCGGTGATGTGTATT
1 CTTCGTGCAGCTGATGT-TATTC-GGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATT
38639260 CGGACCTTCGTGCCTAGCAGG
64 CGG-CCTTCGTGCCTAGCAGG
38639281 CT
1 CT
38639283 ATGATGCTGG
Statistics
Matches: 153, Mismatches: 6, Indels: 20
0.85 0.03 0.11
Matches are distributed among these distances:
80 10 0.07
81 3 0.02
82 5 0.03
83 7 0.05
84 59 0.39
85 54 0.35
86 15 0.10
ACGTcount: A:0.12, C:0.26, G:0.31, T:0.31
Consensus pattern (83 bp):
CTTCGTGCAGCTGATGTTATTCGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCG
GCCTTCGTGCCTAGCAGG
Found at i:38639254 original size:127 final size:123
Alignment explanation
Indices: 38639031--38639282 Score: 341
Period size: 127 Copynumber: 2.0 Consensus size: 123
38639021 GTGTATCGGC
* *
38639031 CTTCGTGCAGGTGATGTATTCGGCCTCGTGCTACTAGGCTTCTGCCGGTGATGTGTATTCGGGCC
1 CTTCGTGCAGGTGATGTATTCGGCCTCGTGCTACTAGGCTTCTGCCGCTGATGTCTATTCGGGCC
*
38639096 TTCGTGCCTAGCAGGCTTCTTGCCAGCGATGTGTATTCAGG-CCTTCGTGCCTAGCAGG
66 TTCGTGCCTAGCAGGCTTCGTGCCAGCGATGTGTATTC-GGACCTTCGTGCCTAGCAGG
*
38639154 CTTCGTGC-GGTGATGTGTATTCGAGCCTTCG-GCCTAGC-AGGCTTCGTGCTGCTGATGTCTAT
1 CTTCGTGCAGGTGA--TGTATTCG-GCC-TCGTG-CTA-CTAGGCTTC-TGCCGCTGATGTCTAT
* * *
38639216 TCGGGCCTTCGTGCCTAGCAGGCTTCGTGTCGGTGATGTGTATTCGGACCTTCGTGCCTAGCAGG
59 TCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGCGATGTGTATTCGGACCTTCGTGCCTAGCAGG
38639281 CT
1 CT
38639283 ATGATGCTGG
Statistics
Matches: 114, Mismatches: 7, Indels: 12
0.86 0.05 0.09
Matches are distributed among these distances:
122 5 0.04
123 8 0.07
124 8 0.07
125 4 0.04
126 15 0.13
127 74 0.65
ACGTcount: A:0.12, C:0.26, G:0.31, T:0.31
Consensus pattern (123 bp):
CTTCGTGCAGGTGATGTATTCGGCCTCGTGCTACTAGGCTTCTGCCGCTGATGTCTATTCGGGCC
TTCGTGCCTAGCAGGCTTCGTGCCAGCGATGTGTATTCGGACCTTCGTGCCTAGCAGG
Found at i:38640763 original size:56 final size:56
Alignment explanation
Indices: 38640677--38640852 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
38640667 ACAAGGGATG
*
38640677 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
38640733 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
38640789 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
38640845 ATGGGCAA
1 ATGGGCAA
38640853 TAAACTAATA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:38642128 original size:40 final size:40
Alignment explanation
Indices: 38641981--38642164 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
38641971 TCGAATGATG
* * * *
38641981 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
38642021 TCCAGACTAAGAT--CGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
38642060 TCCGGGCTAAG-CTCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
38642099 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
38642140 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
38642165 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 56 0.46
40 63 0.52
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:38642186 original size:79 final size:79
Alignment explanation
Indices: 38642034--38642187 Score: 197
Period size: 79 Copynumber: 1.9 Consensus size: 79
38642024 AGACTAAGAT
* * **
38642034 CGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCTCGAAGGCATTGGTGCGAGTTACTAAA
1 CGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
38642099 TCCGGGTTAAGTCC
66 TCCGGGTTAAGTCC
* *
38642113 CGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CT
*
38642176 ATATCC-GGTTAA
63 AAATCCGGGTTAA
38642188 ATTCTGAAGG
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.62
80 23 0.35
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
CGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
TCCGGGTTAAGTCC
Found at i:38648368 original size:56 final size:56
Alignment explanation
Indices: 38648282--38648457 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
38648272 ACAAGGGATG
*
38648282 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
38648338 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
38648394 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
38648450 ATGGGCAA
1 ATGGGCAA
38648458 TAAACTAATA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:38649778 original size:40 final size:39
Alignment explanation
Indices: 38649588--38649771 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
38649578 CGAATGATTT
* * * *
38649588 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
38649628 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* * *
38649668 CCAGGCTAAG-CCCAAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
38649706 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
38649747 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
38649772 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 33 0.27
40 79 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:38649793 original size:79 final size:79
Alignment explanation
Indices: 38649640--38649804 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
38649630 GGACTAAGAT
* **
38649640 CCGAAGGCATTTGTGCGAGTTACTAATTCCAGGCTAAGCCCAAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAA
*
38649705 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * * *
38649719 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCAGGCTAAG-CCCAAAGGCATTGGAACGAGTTA-C
* *
38649782 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
38649798 CCGAAGG
1 CCGAAGG
38649805 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:38654248 original size:43 final size:43
Alignment explanation
Indices: 38654185--38654545 Score: 503
Period size: 43 Copynumber: 8.4 Consensus size: 43
38654175 ATTATAATTA
* * * **
38654185 GGCCTTCGTGCATAGCAGGCTTTGTGCCGGTGGTGTGTATTTA
1 GGCCTTCGTGCCTAGCAGGCTTTGTGCCAGTGATGTGTATTCG
* *
38654228 GACCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTGTATTCG
1 GGCCTTCGTGCCTAGCAGGCTTTGTGCCAGTGATGTGTATTCG
* *
38654271 GGCCTTCGTGCCTAGCAGGCTTCT-TGCCAGTGATGTGAACTCG
1 GGCCTTCGTGCCTAGCAGGCTT-TGTGCCAGTGATGTGTATTCG
*
38654314 GGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATGTGTATTCG
1 GGCCTTCGTGCCTAGCAGGCTTTGTGCCAGTGATGTGTATTCG
* *
38654357 GGCCTTCGTCCCTAGCAGGCTTCT-TGCCGGTGATGTGTATTCG
1 GGCCTTCGTGCCTAGCAGGCTT-TGTGCCAGTGATGTGTATTCG
* *
38654400 GGCCTTCGTGCCTAGCAGGCTTCGTACCAGTGATGTGTATTCG
1 GGCCTTCGTGCCTAGCAGGCTTTGTGCCAGTGATGTGTATTCG
* * *
38654443 GGCCTTCGTGCCTAGCAGGCTTCT-TACCGGTGATGTGTATTTG
1 GGCCTTCGTGCCTAGCAGGCTT-TGTGCCAGTGATGTGTATTCG
* *
38654486 GGCCTTCGTGCCTAGAAGGCTTCGTGCCAGTGATGTGTATTCG
1 GGCCTTCGTGCCTAGCAGGCTTTGTGCCAGTGATGTGTATTCG
38654529 GGCCTTCGTGCCTAGCA
1 GGCCTTCGTGCCTAGCA
38654546 AGCTATGATG
Statistics
Matches: 284, Mismatches: 28, Indels: 12
0.88 0.09 0.04
Matches are distributed among these distances:
42 1 0.00
43 282 0.99
44 1 0.00
ACGTcount: A:0.12, C:0.25, G:0.32, T:0.31
Consensus pattern (43 bp):
GGCCTTCGTGCCTAGCAGGCTTTGTGCCAGTGATGTGTATTCG
Found at i:38654330 original size:86 final size:86
Alignment explanation
Indices: 38654185--38654545 Score: 571
Period size: 86 Copynumber: 4.2 Consensus size: 86
38654175 ATTATAATTA
* * ** *
38654185 GGCCTTCGTGCATAGCAGGCTT-TGTGCCGGTGGTGTGTATTTAGACCTTCGTGCCTAGCAGGCT
1 GGCCTTCGTGCCTAGCAGGCTTCT-TGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCT
38654249 TCGTGCCAGTGATGTGTATTCG
65 TCGTGCCAGTGATGTGTATTCG
* * *
38654271 GGCCTTCGTGCCTAGCAGGCTTCTTGCCAGTGATGTGAACTCGGGCCTTCGTGCCTAGCAGGCTT
1 GGCCTTCGTGCCTAGCAGGCTTCTTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTT
* *
38654336 TGTGCCGGTGATGTGTATTCG
66 CGTGCCAGTGATGTGTATTCG
*
38654357 GGCCTTCGTCCCTAGCAGGCTTCTTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTT
1 GGCCTTCGTGCCTAGCAGGCTTCTTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTT
*
38654422 CGTACCAGTGATGTGTATTCG
66 CGTGCCAGTGATGTGTATTCG
* * *
38654443 GGCCTTCGTGCCTAGCAGGCTTCTTACCGGTGATGTGTATTTGGGCCTTCGTGCCTAGAAGGCTT
1 GGCCTTCGTGCCTAGCAGGCTTCTTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTT
38654508 CGTGCCAGTGATGTGTATTCG
66 CGTGCCAGTGATGTGTATTCG
38654529 GGCCTTCGTGCCTAGCA
1 GGCCTTCGTGCCTAGCA
38654546 AGCTATGATG
Statistics
Matches: 252, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
86 251 1.00
87 1 0.00
ACGTcount: A:0.12, C:0.25, G:0.32, T:0.31
Consensus pattern (86 bp):
GGCCTTCGTGCCTAGCAGGCTTCTTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTT
CGTGCCAGTGATGTGTATTCG
Found at i:38654415 original size:129 final size:129
Alignment explanation
Indices: 38654185--38654545 Score: 580
Period size: 129 Copynumber: 2.8 Consensus size: 129
38654175 ATTATAATTA
* * * *
38654185 GGCCTTCGTGCATAGCAGGCTTTGTGCCGGTGGTGTGTATTTAGACCTTCGTGCCTAGCAGGCTT
1 GGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATGTGTATTTGGGCCTTCGTGCCTAGCAGGCTT
* *
38654250 CGTGCCAGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCTTGCCAGTGATGTGAACTCG
66 CGTGCCAGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCAGTGATGTGAACTCG
* *
38654314 GGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATGTGTATTCGGGCCTTCGTCCCTAGCAGGCTT
1 GGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATGTGTATTTGGGCCTTCGTGCCTAGCAGGCTT
* * * *
38654379 CTTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCAGTGATGTGTATTCG
66 CGTGCCAGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCAGTGATGTGAACTCG
* *
38654443 GGCCTTCGTGCCTAGCAGGCTTCT-TACCGGTGATGTGTATTTGGGCCTTCGTGCCTAGAAGGCT
1 GGCCTTCGTGCCTAGCAGGCTT-TGTGCCGGTGATGTGTATTTGGGCCTTCGTGCCTAGCAGGCT
38654507 TCGTGCCAGTGATGTGTATTCGGGCCTTCGTGCCTAGCA
65 TCGTGCCAGTGATGTGTATTCGGGCCTTCGTGCCTAGCA
38654546 AGCTATGATG
Statistics
Matches: 213, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
129 212 1.00
130 1 0.00
ACGTcount: A:0.12, C:0.25, G:0.32, T:0.31
Consensus pattern (129 bp):
GGCCTTCGTGCCTAGCAGGCTTTGTGCCGGTGATGTGTATTTGGGCCTTCGTGCCTAGCAGGCTT
CGTGCCAGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCAGTGATGTGAACTCG
Found at i:38654596 original size:45 final size:45
Alignment explanation
Indices: 38654523--38654627 Score: 131
Period size: 45 Copynumber: 2.3 Consensus size: 45
38654513 CAGTGATGTG
* * * *
38654523 TATTCGGGCCTTCGTGCCTAGCAAGCTATGATGCTGGTG-GAATAC
1 TATTCGGGCCTTCGAGCCAAGCAAGCTATAATGCCGGTGAG-ATAC
* *
38654568 TATTCGGGCCTTTGAGCCAAGCATGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCAAGCAAGCTATAATGCCGGTGAGATAC
*
38654613 TATTCGGGCTTTCGA
1 TATTCGGGCCTTCGA
38654628 TATCGGGCCT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
45 50 0.98
46 1 0.02
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.30
Consensus pattern (45 bp):
TATTCGGGCCTTCGAGCCAAGCAAGCTATAATGCCGGTGAGATAC
Found at i:38668773 original size:24 final size:23
Alignment explanation
Indices: 38668709--38668812 Score: 111
Period size: 24 Copynumber: 4.3 Consensus size: 23
38668699 AAGCTCCTCC
*
38668709 TGAGCTGATGAACAGTAAGCTCTA
1 TGAGCTGA-AAACAGTAAGCTCTA
*
38668733 TTGAGCTG-AAACGGTAAGCTCTGA
1 -TGAGCTGAAAACAGTAAGCTCT-A
38668757 TGAGCTGAAAACAGTAAGCTCATA
1 TGAGCTGAAAACAGTAAGCTC-TA
* * *
38668781 CGAGCTTAGAACAGTAAGCTCTTA
1 TGAGCTGAAAACAGTAAGCTC-TA
38668805 TGAGCTGA
1 TGAGCTGA
38668813 TATATTGGTA
Statistics
Matches: 67, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
23 19 0.28
24 40 0.60
25 8 0.12
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (23 bp):
TGAGCTGAAAACAGTAAGCTCTA
Found at i:38668799 original size:48 final size:48
Alignment explanation
Indices: 38668709--38668814 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 48
38668699 AAGCTCCTCC
* * *
38668709 TGAGCTGATGAACAGTAAGCTCTATTGAGCTGAAACGGTAAGCTCTGA
1 TGAGCTGATAAACAGTAAGCTCTATCGAGCTGAAACAGTAAGCTCTGA
* *
38668757 TGAGCTGA-AAACAGTAAGCTC-ATACGAGCTTAGAACAGTAAGCTCTTA
1 TGAGCTGATAAACAGTAAGCTCTAT-CGAGCTGA-AACAGTAAGCTCTGA
38668805 TGAGCTGATA
1 TGAGCTGATA
38668815 TATTGGTAAG
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
46 2 0.04
47 18 0.36
48 29 0.58
49 1 0.02
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.25
Consensus pattern (48 bp):
TGAGCTGATAAACAGTAAGCTCTATCGAGCTGAAACAGTAAGCTCTGA
Found at i:38670363 original size:302 final size:300
Alignment explanation
Indices: 38669818--38670382 Score: 760
Period size: 302 Copynumber: 1.9 Consensus size: 300
38669808 TCCACTAACC
* * * * **
38669818 ATAAATGGTCTATTTACCACTTAAGGACCTTTACTTTAATGTTCTACAGTTATTTGACACTTTTA
1 ATAAATGGTCTAATTACCACTTAAGGACCTCTACTTTAAAGTTATACACCTATTTGACACTTTTA
* * * * *
38669883 GCTAATAGAACACAAGTTTTACGCTTTACGTGATTCATTCCTTTTTACCAAATTAAGCATTCAAA
66 ACTAATAGAACACAACTTTTACACTTTACGCGATTCAGTCCTTTTTACCAAATTAAGCATTCAAA
* * ** * * * * *
38669948 TAGTAACATTTCTTTACAAAAATTTCACATAATAATTCTATCATGCTGTAAACCTTATTAAAATA
131 GAGTAAAATTTCTAAACAAAAATTTCACACAATAACTCAATCATGCTGTAAACATTATAAAAATA
* * **
38670013 ATAAAATAAATATTTTAACCTCATATTTGTGGTCTCAAAACCACTATTCTGATTTGACTAAAAAA
196 ATAAAATAAATATTTTAACCTCAGATTTGTGGTCCCAAAACCACTATTCCAATTTGACT-AAAAA
38670078 CGGGTTGTTACAAATAATGTCCATCTTTGTCCTATAAGTTT
260 CGGGTTGTTACAAATAATGTCCATCTTTGTCCTATAAGTTT
*
38670119 ATAAATGGTCTAATTACCACTT-AGAGACCTCTACTTTAAAGTTATATACCTATTTGACACTTTT
1 ATAAATGGTCTAATTACCACTTAAG-GACCTCTACTTTAAAGTTATACACCTATTTGACACTTTT
* * *
38670183 AACTAATAGAACA-ATACTTTTGCACTTTACGCGATTTAGTCCTTTTTTACCGAATTAAGCATTC
65 AACTAATAGAACACA-ACTTTTACACTTTACGCGATTCAGTCC-TTTTTACCAAATTAAGCATTC
* * *
38670247 AAACGA-TAAAATTTCTAAACGAAACTTTCACACAATCACTCAATCATGCTGTAAACATTA-AAA
128 AAA-GAGTAAAATTTCTAAACAAAAATTTCACACAATAACTCAATCATGCTGTAAACATTATAAA
*
38670310 TAATAATAAAATAAATATTTTAACCTTAGATTTGTGGTCCCAAAACCACTATTCCAATTTGACTA
192 -AATAATAAAATAAATATTTTAACCTCAGATTTGTGGTCCCAAAACCACTATTCCAATTTGACTA
38670375 AAAACGGG
256 AAAACGGG
38670383 CTACTACATA
Statistics
Matches: 227, Mismatches: 32, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
300 3 0.01
301 98 0.43
302 125 0.55
303 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (300 bp):
ATAAATGGTCTAATTACCACTTAAGGACCTCTACTTTAAAGTTATACACCTATTTGACACTTTTA
ACTAATAGAACACAACTTTTACACTTTACGCGATTCAGTCCTTTTTACCAAATTAAGCATTCAAA
GAGTAAAATTTCTAAACAAAAATTTCACACAATAACTCAATCATGCTGTAAACATTATAAAAATA
ATAAAATAAATATTTTAACCTCAGATTTGTGGTCCCAAAACCACTATTCCAATTTGACTAAAAAC
GGGTTGTTACAAATAATGTCCATCTTTGTCCTATAAGTTT
Found at i:38671830 original size:16 final size:16
Alignment explanation
Indices: 38671809--38671844 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
38671799 CTAGATCGAC
*
38671809 AAAAGCCGAAATGCCA
1 AAAAGCCAAAATGCCA
*
38671825 AAAAGCCAAAATGTCA
1 AAAAGCCAAAATGCCA
38671841 AAAA
1 AAAA
38671845 ACTGAAAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.58, C:0.19, G:0.14, T:0.08
Consensus pattern (16 bp):
AAAAGCCAAAATGCCA
Found at i:38672105 original size:29 final size:29
Alignment explanation
Indices: 38672067--38672180 Score: 124
Period size: 29 Copynumber: 4.0 Consensus size: 29
38672057 GCATGAGTAT
*
38672067 AAGGTGATTTGGGCCTAACGGGCCATATA
1 AAGGTGATTTGGGCCTAATGGGCCATATA
* * *
38672096 AAGGTGATTTGGACCTGATGGGCCATATG
1 AAGGTGATTTGGGCCTAATGGGCCATATA
* * *
38672125 AATGTGAATTGGGCCTGATGGGCCATATA
1 AAGGTGATTTGGGCCTAATGGGCCATATA
* *
38672154 AATGAGA-TTGGGCC-AAGTGGGCCATAT
1 AAGGTGATTTGGGCCTAA-TGGGCCATAT
38672181 GCATGTATGT
Statistics
Matches: 74, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
27 1 0.01
28 17 0.23
29 56 0.76
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.25
Consensus pattern (29 bp):
AAGGTGATTTGGGCCTAATGGGCCATATA
Found at i:38674741 original size:18 final size:19
Alignment explanation
Indices: 38674710--38674756 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 19
38674700 GTAGTGGGCT
38674710 AAGGTGGTGCTCA-GCCACC
1 AAGG-GGTGCTCACGCCACC
*
38674729 AAGGGGTGGTCAGCTGCCACC
1 AAGGGGTGCTCA-C-GCCACC
38674750 AAGGGGT
1 AAGGGGT
38674757 CATGGGCAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 7 0.29
19 4 0.17
21 13 0.54
ACGTcount: A:0.21, C:0.26, G:0.38, T:0.15
Consensus pattern (19 bp):
AAGGGGTGCTCACGCCACC
Found at i:38678862 original size:47 final size:47
Alignment explanation
Indices: 38678811--38679113 Score: 480
Period size: 47 Copynumber: 6.4 Consensus size: 47
38678801 TTGTGATGTG
* *
38678811 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
38678858 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* * *
38678905 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* **
38678954 AGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
38679001 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* * *
38679048 AGTGTATATATGTGATAGGGCCGAGTGGCCAATGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
*
38679095 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
38679114 TCCCGAAGGG
Statistics
Matches: 239, Mismatches: 15, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
47 195 0.82
49 44 0.18
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
Found at i:38678961 original size:143 final size:141
Alignment explanation
Indices: 38678811--38679113 Score: 516
Period size: 143 Copynumber: 2.1 Consensus size: 141
38678801 TTGTGATGTG
38678811 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
38678876 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
66 GGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATG
*
38678941 TGGTGAATGTGAA
129 TGATGAATGTGAA
*
38678954 AGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
38679019 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAATGTG
66 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
*
38679084 ATGGATGTGAA
131 ATGAATGTGAA
*
38679095 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
38679114 TCCCGAAGGG
Statistics
Matches: 152, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
141 55 0.36
143 97 0.64
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (141 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
ATGAATGTGAA
Found at i:38680839 original size:40 final size:40
Alignment explanation
Indices: 38680516--38680827 Score: 437
Period size: 40 Copynumber: 7.8 Consensus size: 40
38680506 GAGAATTGAG
* *
38680516 AGTGATATATCTGGGCTAAGTCCCGAAGAGCATTCGTCCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
38680556 AGTGATATATCTGGGCTAGGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
38680596 AGTGATGTATCCGGGCTACGTTCTGAAGATCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
38680636 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
38680676 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
38680716 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
38680756 AGTGATATATCCGTGCTAA-ACCCTGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCC-GAAGAGCATTCGTGCT
* * * *
38680796 GGTGTTATATCCGGGCTAGGTCTCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
38680828 ATCATGCTGG
Statistics
Matches: 247, Mismatches: 23, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
39 3 0.01
40 242 0.98
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:38683962 original size:47 final size:47
Alignment explanation
Indices: 38683911--38684213 Score: 489
Period size: 47 Copynumber: 6.4 Consensus size: 47
38683901 TTGTGATGTG
*
38683911 AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
*
38683958 AGTGTATATATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* *
38684005 AGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* *
38684054 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
38684101 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* * * *
38684148 AGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
*
38684195 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
38684214 TCCCGAAGGG
Statistics
Matches: 239, Mismatches: 15, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
47 195 0.82
49 44 0.18
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
Found at i:38684061 original size:143 final size:141
Alignment explanation
Indices: 38683911--38684213 Score: 507
Period size: 143 Copynumber: 2.1 Consensus size: 141
38683901 TTGTGATGTG
38683911 AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * *
38683976 GGTCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATG
66 GGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAACG
*
38684041 TGGTGAATGTGAA
129 TGATGAATGTGAA
*
38684054 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
38684119 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTG
66 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTG
*
38684184 ATGGATGTGAA
131 ATGAATGTGAA
*
38684195 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
38684214 TCCCGAAGGG
Statistics
Matches: 151, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
141 55 0.36
143 96 0.64
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTG
ATGAATGTGAA
Found at i:38684373 original size:37 final size:37
Alignment explanation
Indices: 38684331--38684409 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
38684321 CCGAGCTCTA
* * *
38684331 AAGACCCGATGACTACGTGTGGGGATTTTATCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATATCCGGGT
* *
38684368 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATATCCGGGT
38684405 AAGAC
1 AAGAC
38684410 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATATCCGGGT
Found at i:38689525 original size:30 final size:30
Alignment explanation
Indices: 38689489--38689554 Score: 132
Period size: 30 Copynumber: 2.2 Consensus size: 30
38689479 TCTGTGGCAG
38689489 AGTATGAACGTGAATTTGTAAGACTCAGCA
1 AGTATGAACGTGAATTTGTAAGACTCAGCA
38689519 AGTATGAACGTGAATTTGTAAGACTCAGCA
1 AGTATGAACGTGAATTTGTAAGACTCAGCA
38689549 AGTATG
1 AGTATG
38689555 CCCAGAAATG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.27
Consensus pattern (30 bp):
AGTATGAACGTGAATTTGTAAGACTCAGCA
Found at i:38697217 original size:16 final size:16
Alignment explanation
Indices: 38697196--38697229 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
38697186 GTTGTAATGC
*
38697196 CCCAAAAATCTCGAAA
1 CCCAAAAATCCCGAAA
38697212 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
38697228 CC
1 CC
38697230 TTAAATTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.38, G:0.06, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:38697882 original size:11 final size:11
Alignment explanation
Indices: 38697866--38697895 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
38697856 TAGCTGATTC
38697866 CTTCTTCTACT
1 CTTCTTCTACT
38697877 CTTCTTCTACT
1 CTTCTTCTACT
38697888 CTTCTTCT
1 CTTCTTCT
38697896 TTAATCTGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.07, C:0.37, G:0.00, T:0.57
Consensus pattern (11 bp):
CTTCTTCTACT
Found at i:38698752 original size:29 final size:28
Alignment explanation
Indices: 38698708--38698825 Score: 123
Period size: 29 Copynumber: 4.1 Consensus size: 28
38698698 GTGTGCATGA
38698708 ATAT-AAGGTGACTTGGGCCTAATGGGCC
1 ATATAAAGGTGA-TTGGGCCTAATGGGCC
*
38698736 ATATAAAGGTGATTTGGGCCTGATGGGCC
1 ATATAAAGGTGA-TTGGGCCTAATGGGCC
* * * *
38698765 ATGTGAATGTGAATTGGGCCTGATGGGCC
1 ATATAAAGGTG-ATTGGGCCTAATGGGCC
* *
38698794 ATATAAATGAGATTGGGCC-AAGTGGGCC
1 ATATAAAGGTGATTGGGCCTAA-TGGGCC
38698822 ATAT
1 ATAT
38698826 GCATGTATAT
Statistics
Matches: 78, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
27 1 0.01
28 22 0.28
29 54 0.69
30 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.33, T:0.26
Consensus pattern (28 bp):
ATATAAAGGTGATTGGGCCTAATGGGCC
Found at i:38704319 original size:21 final size:21
Alignment explanation
Indices: 38704293--38704346 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
38704283 TTTCCATTTT
* *
38704293 CAGCAAGTTCTTCTTCTTCAG
1 CAGCAACTTCCTCTTCTTCAG
*
38704314 CAGCAACTTCCTCTTCTTTAG
1 CAGCAACTTCCTCTTCTTCAG
*
38704335 CAGGAACTTCCT
1 CAGCAACTTCCT
38704347 TCTCAACAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.20, C:0.31, G:0.13, T:0.35
Consensus pattern (21 bp):
CAGCAACTTCCTCTTCTTCAG
Found at i:38707351 original size:93 final size:93
Alignment explanation
Indices: 38707243--38707414 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
38707233 GCCCATAAGT
* *
38707243 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
38707307 ACGAGCTCGGATGCCTAGTTACATATCTC
65 ACGAGCTCGGATGCCTAGTTACATATCTC
*
38707336 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
38707401 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
38707415 CAAACATCCT
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATATCTC
Found at i:38707410 original size:46 final size:45
Alignment explanation
Indices: 38707235--38707409 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 45
38707225 TGTAACCTGC
*
38707235 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
*
38707281 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* ** * *
38707327 ACATATCTCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
38707374 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
38707410 ATGCCCAAAC
Statistics
Matches: 110, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 67 0.61
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:38707429 original size:46 final size:45
Alignment explanation
Indices: 38707240--38707429 Score: 143
Period size: 46 Copynumber: 4.1 Consensus size: 45
38707230 CCTGCCCATA
* * * * * *
38707240 AGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGTTC-GG-ATGCCCATACATCT
* * *
38707286 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATCT
* * * * * *
38707333 -CTCGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 AGT-GAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCT
*
38707379 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACAT-CT
38707425 AGTGA
1 AGTGA
38707430 CATGTCACTT
Statistics
Matches: 114, Mismatches: 21, Indels: 18
0.75 0.14 0.12
Matches are distributed among these distances:
44 11 0.10
45 2 0.02
46 66 0.58
47 31 0.27
49 4 0.04
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCT
Found at i:38710859 original size:32 final size:32
Alignment explanation
Indices: 38710817--38710889 Score: 85
Period size: 32 Copynumber: 2.3 Consensus size: 32
38710807 ATACGGCTTT
* * *
38710817 AAGCCTTCAGTAACAGTCTTAT-TATTGGCACA
1 AAGCCATCAGTAACAGTATTATGT-TAGGCACA
*
38710849 AAGCCATCAGTAACTGTATTATGTTAGGCACA
1 AAGCCATCAGTAACAGTATTATGTTAGGCACA
*
38710881 TAGCCATCA
1 AAGCCATCA
38710890 ACTAGAGTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
32 34 0.97
33 1 0.03
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (32 bp):
AAGCCATCAGTAACAGTATTATGTTAGGCACA
Found at i:38711016 original size:22 final size:22
Alignment explanation
Indices: 38710985--38711051 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 22
38710975 AGGCAAATAC
*
38710985 GTTAGGCACACAGCCATAATCAG
1 GTTA-GCACAAAGCCATAATCAG
* **
38711008 GTTAGCACAGAGCCAT-ATGTTG
1 GTTAGCACAAAGCCATAAT-CAG
*
38711030 GTTGGCACAAAGCCATAATCAG
1 GTTAGCACAAAGCCATAATCAG
38711052 AATAATTGGC
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
21 2 0.06
22 27 0.77
23 6 0.17
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.21
Consensus pattern (22 bp):
GTTAGCACAAAGCCATAATCAG
Found at i:38711251 original size:41 final size:41
Alignment explanation
Indices: 38711193--38711314 Score: 165
Period size: 41 Copynumber: 3.0 Consensus size: 41
38711183 AAAAGCCACC
* * *
38711193 GGTGGATCCACGTTCGTCAAGCAACCATATGATCCTTAATTA
1 GGTGGATCCACGGTCGTCAAGCAACCATACGATCCTCAA-TA
* *
38711235 -GTGGATCCACGGTCGTCAAGCAACCATGCGATTCTCAATA
1 GGTGGATCCACGGTCGTCAAGCAACCATACGATCCTCAATA
* *
38711275 GGTGGATCCACAGTCGTCAAGCAACCATGCGATCCTCAAT
1 GGTGGATCCACGGTCGTCAAGCAACCATACGATCCTCAAT
38711315 TTCTTCCTCT
Statistics
Matches: 72, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
40 2 0.03
41 70 0.97
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (41 bp):
GGTGGATCCACGGTCGTCAAGCAACCATACGATCCTCAATA
Found at i:38711605 original size:27 final size:27
Alignment explanation
Indices: 38711575--38711708 Score: 101
Period size: 27 Copynumber: 4.9 Consensus size: 27
38711565 GTAAATCTAC
**
38711575 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTTTGTAATTTTGT
* *
38711602 AAACCAATGGTCTTTTTGTAATTTT-T
1 AAACCAAGGGTATTTTTGTAATTTTGT
* *
38711628 GAAAGTCAAGGGTATTTTTGTAATTCTGT
1 -AAA-CCAAGGGTATTTTTGTAATTTTGT
* * * * **
38711657 AAATCAGGGGTACTTTTGTCATTTTCC
1 AAACCAAGGGTATTTTTGTAATTTTGT
* *
38711684 AAATCAAGGGT-TTTTTATTAATTTT
1 AAACCAAGGGTATTTTT-GTAATTTT
38711709 CCAAATCAGA
Statistics
Matches: 85, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
26 5 0.06
27 58 0.68
28 21 0.25
29 1 0.01
ACGTcount: A:0.28, C:0.10, G:0.17, T:0.44
Consensus pattern (27 bp):
AAACCAAGGGTATTTTTGTAATTTTGT
Done.