Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 134 of 333
Found at i:43636223 original size:30 final size:30
Alignment explanation
Indices: 43636189--43636251 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
43636179 GCTTGTAAAG
43636189 CTGAAGAACTGAGCAACGAGAAGAGAAAAC
1 CTGAAGAACTGAGCAACGAGAAGAGAAAAC
43636219 CTGAAGAACTGAGCAACGAGAAGAGAAAAC
1 CTGAAGAACTGAGCAACGAGAAGAGAAAAC
43636249 CTG
1 CTG
43636252 TGAATGAAGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.48, C:0.17, G:0.27, T:0.08
Consensus pattern (30 bp):
CTGAAGAACTGAGCAACGAGAAGAGAAAAC
Found at i:43641425 original size:50 final size:50
Alignment explanation
Indices: 43641350--43641575 Score: 192
Period size: 50 Copynumber: 4.5 Consensus size: 50
43641340 GTGAATAACG
* *
43641350 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
* * ** **
43641400 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACT-TCGA-TCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-A-GACTGTTAAGTCACA
* * ** * *
43641451 TGTGTAGTACTAAGTGCAGGCTGCTACGTGTATCAGA-TGGCGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GTTAAGTCACA
* ** * *
43641501 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACTGGATTGTT--GTTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAG-TCACA
*
43641550 TGTATAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
43641576 TGCATATTAG
Statistics
Matches: 140, Mismatches: 28, Indels: 17
0.76 0.15 0.09
Matches are distributed among these distances:
47 1 0.01
48 3 0.02
49 28 0.20
50 69 0.49
51 33 0.24
52 3 0.02
53 3 0.02
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
Found at i:43641534 original size:101 final size:101
Alignment explanation
Indices: 43641349--43641534 Score: 257
Period size: 101 Copynumber: 1.8 Consensus size: 101
43641339 TGTGAATAAC
* ** *
43641349 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGCGAAGTCACATGTGTAGTACTAAG
*
43641414 TGCAGGCTACTATGCGTACTCAATGACTTCGATCAT
66 TGCAGGCTACTACGCGTACTCAATGACTTCGATCAT
* * * *
43641450 GTGTGTAGTACTAAGTGCAGGCTGCTACGTGTATCAGA-TGGCGAGGTCACGTGTGTAGTACTAA
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GCGAAGTCACATGTGTAGTACTAA
* *
43641514 GTGTAGGCTACTACGTGTACT
65 GTGCAGGCTACTACGCGTACT
43641535 GGATTGTTGT
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
100 1 0.01
101 72 0.99
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.30
Consensus pattern (101 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGCGAAGTCACATGTGTAGTACTAAG
TGCAGGCTACTACGCGTACTCAATGACTTCGATCAT
Found at i:43641552 original size:101 final size:99
Alignment explanation
Indices: 43641349--43641575 Score: 244
Period size: 101 Copynumber: 2.3 Consensus size: 99
43641339 TGTGAATAAC
* ** *
43641349 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGCGAAGTCACATGTGTAGTACTAAG
*
43641414 TGCAGGCTACTATGCGTACTCAATGACTTCGATCA
66 TGCAGGCTACTACGCGTACTCAATGACTTCGA-CA
* * * *
43641449 TGTGTGTAGTACTAAGTGCAGGCTGCTACGTGTATCAGA-TGGCGAGGTCACGTGTGTAGTACTA
1 -GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GCGAAGTCACATGTGTAGTACTA
* * * * **
43641513 AGTGTAGGCTACTACGTGTACTGGATTGTTGTTCG-CA
64 AGTGCAGGCTACTACGCGTACT-CAATG-ACTTCGACA
*
43641550 -TGTATAGTACTAAGTGCAGGCTACTA
1 GTGTGTAGTACTAAGTGCAGGCTACTA
43641576 TGCATATTAG
Statistics
Matches: 106, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
99 24 0.23
100 1 0.01
101 74 0.70
102 3 0.03
103 4 0.04
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (99 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGCGAAGTCACATGTGTAGTACTAAG
TGCAGGCTACTACGCGTACTCAATGACTTCGACA
Found at i:43652651 original size:30 final size:30
Alignment explanation
Indices: 43652617--43652676 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
43652607 CCTTAACTCG
43652617 AACTTTTGCAAAATTACAATTTTGCCCCTA
1 AACTTTTGCAAAATTACAATTTTGCCCCTA
* * *
43652647 AACTTTTGCATATTTACACTTTTGCCCCTA
1 AACTTTTGCAAAATTACAATTTTGCCCCTA
43652677 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTTGCAAAATTACAATTTTGCCCCTA
Found at i:43667765 original size:91 final size:94
Alignment explanation
Indices: 43667553--43667923 Score: 285
Period size: 94 Copynumber: 3.9 Consensus size: 94
43667543 GGATTACTTA
* * * * *
43667553 TGTGCCAGTGTAAGACATGTCTGGGAGAGGCATCGGCCACTTTATGAGTGCCAGTGTAAGACCAT
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATGAGTGCCAGTGTAAGACCAT
* *
43667618 GTCTGGGACATGGGATCGGCATAGAGATG
66 GCCTGGGACATGGCATCGGCATAGAGATG
* ** *
43667647 AGTGCCAGTGTAAGACATGTCCAGGACATGCATCAGCCTCGATGATGA-TAGCCAGTGTAAGA-C
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATGATGAGT-GCCAGTGTAAGACC
*
43667710 GTGCCTGGGACAT-GCATCGGC-T-GAGAAT-
64 ATGCCTGGGACATGGCATCGGCATAGAG-ATG
* * * * * *
43667738 TGTGCTAGTGTAAGGCATGTCTGGGACATGCATCAG-CACGTATAAATAAGAGCTAGTGTAAGAC
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAC--AT-GATGAGTGCCAGTGTAAGAC
* * **
43667802 CATGTCTGGGACATGGCATCGGCCTCTATGATG
63 CATGCCTGGGACATGGCATCGGCATAGA-GATG
* * * * ** *
43667835 ATAG-G-CAGTATAATACCATGTCTGGGACATGGCATCGGCCTCTATGATGA-TAGGTAGTATAA
1 -T-GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAC-ATGATGAGT-GCCAGTGTAA
*
43667897 GACCATGTCTGGGACATGGCATCGGCA
60 GACCATGCCTGGGACATGGCATCGGCA
43667924 ACTTATCCCA
Statistics
Matches: 221, Mismatches: 38, Indels: 32
0.76 0.13 0.11
Matches are distributed among these distances:
90 2 0.01
91 36 0.16
92 17 0.08
93 19 0.09
94 54 0.24
95 18 0.08
96 3 0.01
97 7 0.03
98 53 0.24
99 10 0.05
100 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (94 bp):
TGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATGAGTGCCAGTGTAAGACCAT
GCCTGGGACATGGCATCGGCATAGAGATG
Found at i:43667853 original size:49 final size:49
Alignment explanation
Indices: 43667558--43667922 Score: 248
Period size: 49 Copynumber: 7.7 Consensus size: 49
43667548 ACTTATGTGC
* * * * *
43667558 CAGTGTAAGA-CATGTCTGGGAGA-GGCATCGGCCACT-TTATGAGT-GC
1 CAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCTATGATGA-TAGG
* * * ** *
43667604 CAGTGTAAGACCATGTCTGGGACATGGGATCGGCATAGA-GATGAGT-GC
1 CAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCTATGATGA-TAGG
* ** * * *
43667652 CAGTGTAAGA-CATGTCCAGGACAT-GCATCAGCCTCGATGATGATAGC
1 CAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCTATGATGATAGG
* * * * *
43667699 CAGTGTAAGA-CGTGCCTGGGACAT-GCATCGG-CT-GA-GA--ATTGTG
1 CAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCTATGATGATAG-G
* * * * *
43667742 CTAGTGTAAG-GCATGTCTGGGACAT-GCATCAGCAC-GTAT-A-AATAAGAG
1 C-AGTATAAGACCATGTCTGGGACATGGCATCGGC-CTCTATGATGAT-AG-G
*
43667790 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCTATGATGATAGG
1 C-AGTATAAGACCATGTCTGGGACATGGCATCGGCCTCTATGATGATAGG
*
43667840 CAGTATAATACCATGTCTGGGACATGGCATCGGCCTCTATGATGATAGG
1 CAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCTATGATGATAGG
*
43667889 TAGTATAAGACCATGTCTGGGACATGGCATCGGC
1 CAGTATAAGACCATGTCTGGGACATGGCATCGGC
43667923 AACTTATCCC
Statistics
Matches: 266, Mismatches: 34, Indels: 35
0.79 0.10 0.10
Matches are distributed among these distances:
42 3 0.01
43 1 0.00
44 28 0.11
45 2 0.01
46 25 0.09
47 59 0.22
48 38 0.14
49 93 0.35
50 12 0.05
51 3 0.01
52 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (49 bp):
CAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCTATGATGATAGG
Found at i:43674218 original size:37 final size:37
Alignment explanation
Indices: 43674166--43674249 Score: 105
Period size: 37 Copynumber: 2.3 Consensus size: 37
43674156 TGTGAGTACG
* * * *
43674166 TGTATGACCATAGCTGGGCTATGGCATCGTAATGACA
1 TGTAAGACCAAAGCTGGGCTATAGCATCGTAATCACA
* * *
43674203 TGTAAGACCAAAGCTGGGCTATAGCATTGTGATCCCA
1 TGTAAGACCAAAGCTGGGCTATAGCATCGTAATCACA
43674240 TGTAAGACCA
1 TGTAAGACCA
43674250 TGTCTGGGAC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (37 bp):
TGTAAGACCAAAGCTGGGCTATAGCATCGTAATCACA
Found at i:43674291 original size:48 final size:48
Alignment explanation
Indices: 43674230--43674457 Score: 359
Period size: 48 Copynumber: 4.8 Consensus size: 48
43674220 GCTATAGCAT
*
43674230 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* *
43674278 TGTGATCCTATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
*
43674326 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * *
43674374 TGTGATCCCATGTAAGACCATGTCTGGGATATGGCGTTGGCATCGTTA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * *
43674422 TGTGAT-TCATGTAAGACCATGTTTAGGACATGGCAT
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCAT
43674458 CAATATGAGA
Statistics
Matches: 167, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
47 25 0.15
48 142 0.85
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
Found at i:43680609 original size:40 final size:40
Alignment explanation
Indices: 43680539--43680663 Score: 182
Period size: 40 Copynumber: 3.1 Consensus size: 40
43680529 AAACCAAGTA
* * * *
43680539 CCTTCGGGATTTA-ACCAGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
43680578 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
43680618 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
43680658 CCTTCG
1 CCTTCG
43680664 TTATCATCCA
Statistics
Matches: 79, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 13 0.16
40 66 0.84
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:43685467 original size:30 final size:30
Alignment explanation
Indices: 43685433--43685493 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
43685423 TTCCCGAGCC
43685433 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * *
43685463 TAGGGGCAAAATTGTAATTTTGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
43685493 T
1 T
43685494 GAATTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.41, C:0.05, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:43686103 original size:64 final size:64
Alignment explanation
Indices: 43686025--43686270 Score: 282
Period size: 64 Copynumber: 3.8 Consensus size: 64
43686015 ACATTATGAG
* * *
43686025 GTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTATGGGATATAT
1 GTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAAAT
43686089 GTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAAAT
1 GTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAAAT
* * * * * * * * *
43686153 GTAGCTAGGTTGCATGTGTGGTTCCAAGTGAAGGACACCATGTAAACAAGAGAGCTACGAGATAC
1 GTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGATAA
43686218 A-
63 AT
* * * *
43686219 GTGGCTAGGTCACATGGGTGGTACTAAGTGATA-ACCATGT-GTACAAGAGAGC
1 GTAGCTAGGTCGCATGGGTGATACTATGTG-TACACCATGTAG-ACAAGAGAGC
43686271 CAAAATTATG
Statistics
Matches: 154, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
63 18 0.12
64 80 0.52
65 8 0.05
66 17 0.11
67 31 0.20
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.24
Consensus pattern (64 bp):
GTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAAAT
Found at i:43687639 original size:20 final size:21
Alignment explanation
Indices: 43687603--43687641 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
43687593 TTACTTTTAT
43687603 GGGTTATTCTATTGTTCAAAA
1 GGGTTATTCTATTGTTCAAAA
*
43687624 GGGTTA-TCTTTTGTTCAA
1 GGGTTATTCTATTGTTCAA
43687642 TCTTGCTACC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.23, C:0.10, G:0.21, T:0.46
Consensus pattern (21 bp):
GGGTTATTCTATTGTTCAAAA
Found at i:43698941 original size:46 final size:46
Alignment explanation
Indices: 43698890--43698982 Score: 159
Period size: 46 Copynumber: 2.0 Consensus size: 46
43698880 GCTATAAAGC
*
43698890 TTAGTATAATTCACATACATACTTGTACAAGCTCATATCAATCTCA
1 TTAGTATAATTCACATACATACCTGTACAAGCTCATATCAATCTCA
* *
43698936 TTAGTATAATTCACGTACGTACCTGTACAAGCTCATATCAATCTCA
1 TTAGTATAATTCACATACATACCTGTACAAGCTCATATCAATCTCA
43698982 T
1 T
43698983 ACTCATCCAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.34, C:0.23, G:0.09, T:0.34
Consensus pattern (46 bp):
TTAGTATAATTCACATACATACCTGTACAAGCTCATATCAATCTCA
Found at i:43702565 original size:33 final size:34
Alignment explanation
Indices: 43702513--43702578 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 34
43702503 CTAAAATGTT
*
43702513 AAACGGGCTTAGGCCCAGACTGCTACTGTTACTA
1 AAACGGGCTTAGGCCCAGACTGCTACTATTACTA
*
43702547 AAACGGGC-TCGGCCCAGACTGCTACTATTACT
1 AAACGGGCTTAGGCCCAGACTGCTACTATTACT
43702579 TAAATAGGCT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 22 0.73
34 8 0.27
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (34 bp):
AAACGGGCTTAGGCCCAGACTGCTACTATTACTA
Found at i:43721341 original size:23 final size:22
Alignment explanation
Indices: 43721292--43721345 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 22
43721282 TAGCTACTAT
*
43721292 GAGCTTACTGTTCAGCTCGTCA
1 GAGCTTACTGTTCAGCTCATCA
*
43721314 AAGCTTACTGTTTCAGCTCAAT-A
1 GAGCTTACTG-TTCAGCTC-ATCA
43721337 GAGCTTACT
1 GAGCTTACT
43721346 ATCCATCAGC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
22 9 0.33
23 17 0.63
24 1 0.04
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (22 bp):
GAGCTTACTGTTCAGCTCATCA
Found at i:43735136 original size:56 final size:56
Alignment explanation
Indices: 43735050--43735169 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
43735040 ACAAGGGATG
43735050 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
43735106 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
43735162 ATAGGCAA
1 ATGGGCAA
43735170 TAAACTAATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.46, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:43736639 original size:49 final size:48
Alignment explanation
Indices: 43736586--43736867 Score: 435
Period size: 49 Copynumber: 5.9 Consensus size: 48
43736576 TACATGATAG
* *
43736586 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT-TA
* ** *
43736635 TATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGCG-TA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTTA
43736682 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT-TA
43736731 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT-TA
*
43736780 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG-TG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTTA
*
43736827 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
43736868 CATGCATATA
Statistics
Matches: 221, Mismatches: 9, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
47 84 0.38
49 136 0.62
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (48 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTTA
Found at i:43736697 original size:96 final size:96
Alignment explanation
Indices: 43736581--43736867 Score: 436
Period size: 96 Copynumber: 3.0 Consensus size: 96
43736571 GTCTGTACAT
* *
43736581 GATAGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
1 GATA-TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT-TATATATGTGATA
* **
43736646 AGGCCTAATGGCTGATGTGATGAATGTGAAAGC
64 AGGCCGAATGGCCAATGTGATGAATGTGAAAGC
43736679 G-TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATATGTGATAA
1 GATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT-TATATATGTGATAA
*
43736743 GGCCGAATGGCCAATGTGATGAATGTGAAAGT
65 GGCCGAATGGCCAATGTGATGAATGTGAAAGC
* *
43736775 GTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG-TGTATGTGTGATA
1 G-ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTTATATATGTGATA
43736838 AGGCCGAATGGCCAATGTGATGAATGTGAA
64 AGGCCGAATGGCCAATGTGATGAATGTGAA
43736868 CATGCATATA
Statistics
Matches: 177, Mismatches: 9, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
96 128 0.72
97 2 0.01
98 46 0.26
99 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
GATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTTATATATGTGATAAG
GCCGAATGGCCAATGTGATGAATGTGAAAGC
Found at i:43736713 original size:22 final size:22
Alignment explanation
Indices: 43736685--43736762 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
43736675 AAGCGTATAT
43736685 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * **
43736707 ATGTGATGAATG-TGAAAGTGTGTATA
1 ATGTGAT-AAGGCCG-AA-TG-G-CCA
43736733 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
43736756 ATGTGAT
1 ATGTGAT
43736763 GAATGTGAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 14
0.65 0.13 0.22
Matches are distributed among these distances:
22 15 0.37
23 6 0.15
24 3 0.07
25 3 0.07
26 6 0.15
27 8 0.20
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.27
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:43736809 original size:145 final size:145
Alignment explanation
Indices: 43736586--43736867 Score: 476
Period size: 145 Copynumber: 1.9 Consensus size: 145
43736576 TACATGATAG
* *
43736586 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* **
43736651 TAATGGCTGATGTGATGAATGTGAA-AGCGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
66 GAATGGCCAATGTGATGAATGTGAACA-CGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
43736715 AATGTGAAAGTGTGTA
130 AATGTGAAAGTGTGTA
43736731 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* * *
43736796 GAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGA
66 GAATGGCCAATGTGATGAATGTGAACACGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
43736861 ATGTGAA
131 ATGTGAA
43736868 CATGCATATA
Statistics
Matches: 128, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
145 127 0.99
146 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (145 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
GAATGGCCAATGTGATGAATGTGAACACGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
ATGTGAAAGTGTGTA
Found at i:43738804 original size:47 final size:47
Alignment explanation
Indices: 43738729--43738835 Score: 142
Period size: 47 Copynumber: 2.3 Consensus size: 47
43738719 TTCGGGACTC
* * * *
43738729 ATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCT
1 ATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCT
* * * *
43738776 GTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCT
43738823 ATCACATATATAC
1 ATCACATATATAC
43738836 TTATCACATA
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 51 1.00
ACGTcount: A:0.28, C:0.32, G:0.09, T:0.31
Consensus pattern (47 bp):
ATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCT
Found at i:43738847 original size:62 final size:62
Alignment explanation
Indices: 43738777--43738897 Score: 233
Period size: 62 Copynumber: 2.0 Consensus size: 62
43738767 CTCGGCCCTG
43738777 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTTA
*
43738839 TCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATAC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
43738898 ACTTTCACAT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.33
Consensus pattern (62 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTTA
Found at i:43738854 original size:17 final size:15
Alignment explanation
Indices: 43738820--43738850 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
43738810 GCCATTAGGC
43738820 CTTATCACATATATA
1 CTTATCACATATATA
43738835 CTTATCACATATATA
1 CTTATCACATATATA
43738850 C
1 C
43738851 ACTTTCACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (15 bp):
CTTATCACATATATA
Found at i:43738890 original size:31 final size:30
Alignment explanation
Indices: 43738793--43738891 Score: 78
Period size: 31 Copynumber: 3.2 Consensus size: 30
43738783 ATATACACTT
43738793 TCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATTCATCAC-TCGGCCATTAGGCCTTA
*** **
43738824 TCACATAT-AT-ACTTATCACATATATACACTT-
1 TCACAT-TCATCACTCGGC-CAT-TAGGC-CTTA
43738855 TCACATTCATCACGTCGGCCATTAGGCCTTA
1 TCACATTCATCAC-TCGGCCATTAGGCCTTA
43738886 TCACAT
1 TCACAT
43738892 ATATACACTT
Statistics
Matches: 50, Mismatches: 10, Indels: 16
0.66 0.13 0.21
Matches are distributed among these distances:
29 2 0.04
30 9 0.18
31 28 0.56
32 9 0.18
33 2 0.04
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (30 bp):
TCACATTCATCACTCGGCCATTAGGCCTTA
Found at i:43741281 original size:47 final size:47
Alignment explanation
Indices: 43741213--43741320 Score: 171
Period size: 47 Copynumber: 2.3 Consensus size: 47
43741203 GGGGTGTCAC
*
43741213 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGAGT
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGAGT
* * *
43741260 ATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGT
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGAGT
*
43741307 ATAAATGTGATAAG
1 ATATATGTGATAAG
43741321 TCCCGAAGGG
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.36, C:0.07, G:0.31, T:0.26
Consensus pattern (47 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGAGT
Found at i:43752897 original size:47 final size:47
Alignment explanation
Indices: 43752826--43753185 Score: 192
Period size: 47 Copynumber: 7.7 Consensus size: 47
43752816 TGATTTGTGC
43752826 GCTAGTGTAAGACATGTCTGGGACAT-GCATCAACCATATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCAACCATATTATGAGA
* * * * * *
43752872 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGA-CATCCA-GACGAGG
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCAACCAT--ATTATGAGA
* * *
43752920 GCTAGTGTAAGACATGTCTGGGGCAT-GCATCAGCCATATTATAAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCAACCATATTATGAGA
* ** * * *
43752966 GCTAGTGTAAGACCATGACTGGGACATGGCATCGGCACAGA-GAT-ACGT
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCAAC-CATATTATGA-GA
* * ** ***
43753014 GCCAGAGTAAGACATGTCTGGGACAT-GCATCGGCC-TCGGCA-GAGATA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCAACCAT-ATTATGAG--A
* * * ** * * * *
43753061 GCCAGTGTAAGACGTGTCTGGGACA-CGCATC-GGC-TA-AAAGTTGT
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCAACCATATTATG-AGA
* *
43753105 GCTAGTGTAAGACATGTTTGGGACAT-GCATC-AGCATGCATATATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCAACCAT--AT-TATGAGA
43753153 GCTAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATC
43753186 GAGAATTTAT
Statistics
Matches: 244, Mismatches: 44, Indels: 48
0.73 0.13 0.14
Matches are distributed among these distances:
44 30 0.12
45 5 0.02
46 45 0.18
47 86 0.35
48 54 0.22
49 19 0.08
50 5 0.02
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCAACCATATTATGAGA
Found at i:43752989 original size:94 final size:94
Alignment explanation
Indices: 43752826--43753187 Score: 373
Period size: 94 Copynumber: 3.9 Consensus size: 94
43752816 TGATTTGTGC
* *
43752826 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCAT-ATTATGAGAGCCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATCATTATAAGAGCCAGTGTAAGACCATGT
* *
43752890 TTGGGACATGGCATCGACATCCAGACG-AGG
66 CTGGGACATGGCATCGACAT-CAGA-GTAGT
* * *
43752920 GCTAGTGTAAGACATGTCTGGGGCATGCATCAGCCAT-ATTATAAGAGCTAGTGTAAGACCATGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATCATTATAAGAGCCAGTGTAAGACCATGT
*
43752984 CTGGGACATGGCATCGGCA-CAGAGATACGT
66 CTGGGACATGGCATCGACATCAGAG-TA-GT
* * * *** * * *
43753014 GCCAGAGTAAGACATGTCTGGGACATGCATCGGCC-TCGGCAGAGATAGCCAGTGTAAGA-CGTG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATCATTATA-AGAGCCAGTGTAAGACCATG
* * * * *
43753077 TCTGGGACA-CGCATCGGC-TAAAAGTTGT
65 TCTGGGACATGGCATCGACATCAGAGTAGT
* * *
43753105 GCTAGTGTAAGACATGTTTGGGACATGCATCAG-CATGCATATATGAGAGCTAGTGTAAGACCAT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAT-CAT-TATAAGAGCCAGTGTAAGACCAT
43753169 GTCTGGGACATGGCATCGA
64 GTCTGGGACATGGCATCGA
43753188 GAATTTATCC
Statistics
Matches: 219, Mismatches: 38, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
90 1 0.00
91 33 0.15
92 19 0.09
93 26 0.12
94 127 0.58
95 13 0.06
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATCATTATAAGAGCCAGTGTAAGACCATGT
CTGGGACATGGCATCGACATCAGAGTAGT
Found at i:43753185 original size:141 final size:140
Alignment explanation
Indices: 43752826--43753187 Score: 380
Period size: 141 Copynumber: 2.6 Consensus size: 140
43752816 TGATTTGTGC
*
43752826 GCTAGTGTAAGACATGTCTGGGACATGCATCAAC-CATATTATGAGAGCCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACATA-TATGAGAGCCAGTGTAAGACCATGT
* * * * *
43752890 TTGGGACATGGCATCGACATCCAGACGAGGGCTAGTGTAAGACATGTCTGGGGCATGCATCAGCC
65 CTGGGACATGGCATCGACATCCAGACGAGAGCCAGTGTAAGACATGTCTGGGACACGCATCAGCC
**
43752955 ATATTATAAGA
130 ATAAAATAAGA
* * * * * *
43752966 GCTAGTGTAAGACCATGACTGGGACATGGCATCGGCACAGAGAT-ACGTGCCAGAGTAAGA-CAT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCACATATATGA-GAGCCAGTGTAAGACCAT
* * * *
43753029 GTCTGGGACAT-GCATCGGCCTCGGCAGA-GATAGCCAGTGTAAGACGTGTCTGGGACACGCATC
63 GTCTGGGACATGGCATCGACATC--CAGACGAGAGCCAGTGTAAGACATGTCTGGGACACGCATC
* * *
43753092 -GGC-TAAAAGT-TGT
126 AGCCATAAAA-TAAGA
* *
43753105 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCATGCATATATGAGAGCTAGTGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCA--CATATATGAGAGCCAGTGTAAGACCATG
43753170 TCTGGGACATGGCATCGA
64 TCTGGGACATGGCATCGA
43753188 GAATTTATCC
Statistics
Matches: 180, Mismatches: 30, Indels: 23
0.77 0.13 0.10
Matches are distributed among these distances:
137 8 0.04
138 12 0.07
139 32 0.18
140 39 0.22
141 62 0.34
142 24 0.13
143 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (140 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACATATATGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCGACATCCAGACGAGAGCCAGTGTAAGACATGTCTGGGACACGCATCAGCCA
TAAAATAAGA
Found at i:43759114 original size:30 final size:30
Alignment explanation
Indices: 43759075--43759135 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
43759065 ATTGATTTTC
* *
43759075 AGGCATAGGGGTAAAATAGTCATTTTACCA
1 AGGCATAGGGGCAAAACAGTCATTTTACCA
* *
43759105 AGGCCTAGGGGCAAAACGGTCATTTTACCA
1 AGGCATAGGGGCAAAACAGTCATTTTACCA
43759135 A
1 A
43759136 AGTTATAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (30 bp):
AGGCATAGGGGCAAAACAGTCATTTTACCA
Found at i:43759548 original size:47 final size:45
Alignment explanation
Indices: 43759480--43759835 Score: 233
Period size: 47 Copynumber: 7.6 Consensus size: 45
43759470 TTTGTGCGCT
43759480 AGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATA-TATGAGAGCC
* * * * * *
43759526 AGTGTAAGACCATGTTTGGGACATGGCATC-GACATCCAGACGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAT--ATATGAGAGCC
* *
43759574 AGAGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGTGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATA-TATGAGAGCC
* * * * * *
43759620 AGTGTAAGACCATG-CTGGGACATGGCAACGGTACAGAGATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAG-CCATATATGAGAGCC
* * *
43759667 AGAGTAAGACATGTCTGGGACATGCATCGGCC-TCAGCA-GAGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAT-A-TATGAG--AGCC
* * * * * *
43759714 AGTGTAAGACGTGTCTAGGACAGGCATC-GGC-TA-A-GAGTTTTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATATATGAG---AGCC
*
43759758 AGTGTAAGAAATGTCTGGGACATGCATCAGCACTCATATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAG--C-CATATATGAGAGCC
* *
43759806 AATGTAAGACCATGTTTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
43759836 GACAATTTAT
Statistics
Matches: 243, Mismatches: 43, Indels: 44
0.74 0.13 0.13
Matches are distributed among these distances:
43 4 0.02
44 27 0.11
45 8 0.03
46 51 0.21
47 96 0.40
48 33 0.14
49 15 0.06
50 6 0.02
51 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATATATGAGAGCC
Found at i:43759820 original size:140 final size:139
Alignment explanation
Indices: 43759477--43759839 Score: 361
Period size: 140 Copynumber: 2.6 Consensus size: 139
43759467 TGATTTGTGC
*
43759477 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-CCATATTATGAGAGCCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGACCATA-TATGAGAGCCAATGTAAGACCATGT
* * * *
43759541 TTGGGACATGGCATCGACATCCAGACGAGGGCTAGAGTAAGACATGTCTGGGACATGCATCAGCC
65 TTGGGACATGGCATCGACATCCAGACGAGAGCCAGAGTAAGACATGTCTAGGACAGGCATCAGCC
43759606 ATATTATGAGT
130 ATA-TATGAGT
* * * * * *
43759617 GCCAGTGTAAGACCATG-CTGGGACATGGCAACGGTA-CAGAGATGAGTGCCAGA-GTAAGA-CA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAG-ACCATATATGAGAGCCA-ATGTAAGACCA
* * * * * *
43759678 TGTCTGGGACAT-GCATCGGCCTCAGCAGA-GATAGCCAGTGTAAGACGTGTCTAGGACAGGCAT
62 TGTTTGGGACATGGCATCGACATC--CAGACGAGAGCCAGAGTAAGACATGTCTAGGACAGGCAT
*
43759741 C-GGC-TA-A-GAGTTTT
125 CAGCCATATATGAG---T
*
43759755 GCTAGTGTAAGAAATGTCTGGGACATGCATCAGCACTCATATATGAGAGCCAATGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-AC-CATATATGAGAGCCAATGTAAGACCATG
43759820 TTTGGGACATGGCATCGACA
64 TTTGGGACATGGCATCGACA
43759840 ATTTATCCCA
Statistics
Matches: 178, Mismatches: 29, Indels: 31
0.75 0.12 0.13
Matches are distributed among these distances:
135 3 0.02
136 1 0.01
137 9 0.05
138 24 0.13
139 29 0.16
140 74 0.42
141 35 0.20
142 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (139 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGACCATATATGAGAGCCAATGTAAGACCATGTT
TGGGACATGGCATCGACATCCAGACGAGAGCCAGAGTAAGACATGTCTAGGACAGGCATCAGCCA
TATATGAGT
Found at i:43762408 original size:28 final size:28
Alignment explanation
Indices: 43762345--43762498 Score: 274
Period size: 28 Copynumber: 5.5 Consensus size: 28
43762335 ATATTAAGTC
* *
43762345 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
43762372 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
43762400 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
43762428 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
43762456 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
43762484 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
43762499 GTACAATTTA
Statistics
Matches: 124, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
27 22 0.18
28 102 0.82
ACGTcount: A:0.34, C:0.29, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:43770661 original size:28 final size:28
Alignment explanation
Indices: 43770598--43770748 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
43770588 ATATTAAGTC
*
43770598 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
43770625 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
43770653 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
43770681 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
43770709 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
43770738 CGCACACTTAG
1 CGCACACTTAG
43770749 CGCCAATCTC
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 22 0.19
28 77 0.67
29 16 0.14
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:43775258 original size:47 final size:47
Alignment explanation
Indices: 43775067--43775287 Score: 181
Period size: 47 Copynumber: 4.7 Consensus size: 47
43775057 GGTAAGGTGT
* * *
43775067 CGATGCCATGTCCCAGACATGGCCTTACACCAGC-TCATATC-TCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTTCATATCGT--AGC
* * * *
43775114 CGATGCCATGTCTCATACATGGTCTTACACT-GACTATCATCTCGTAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG-CT-TCATATCGTAGC
* * * *
43775162 TGATG-CATGTCCTAGACAT-GTCTTACACTAGCATTCGTCTCGATA-C
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGC-TTCATATCG-TAGC
* *
43775208 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCATAAT-GTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTTCAT-ATCGTAGC
* *
43775255 CGATG-TATGTCCTAGACAT-GTCTTACACTAGCT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCT
43775288 CACAATAACC
Statistics
Matches: 143, Mismatches: 20, Indels: 24
0.76 0.11 0.13
Matches are distributed among these distances:
45 13 0.09
46 36 0.25
47 67 0.47
48 20 0.14
49 6 0.04
50 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.30
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTTCATATCGTAGC
Found at i:43775281 original size:93 final size:94
Alignment explanation
Indices: 43775114--43775286 Score: 251
Period size: 93 Copynumber: 1.9 Consensus size: 94
43775104 TATCTCAAGT
* * * **
43775114 CGATGCCATGTCTCATACATGGTCTTACACTGACTATCATCTCGTAGTTGATGCATGTCCTAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCTAGAC
43775179 ATGTCTTACACTAGCATTCGTCTCGATAC
66 ATGTCTTACACTAGCATTCGTCTCGATAC
* * *
43775208 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TCATAAT-GTGGCCGATGTATGTCCTAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAT-ATCGTAGCCGATGCATGTCCTAGA
43775271 CATGTCTTACACTAGC
65 CATGTCTTACACTAGC
43775287 TCACAATAAC
Statistics
Matches: 70, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
93 37 0.53
94 33 0.47
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (94 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCTAGAC
ATGTCTTACACTAGCATTCGTCTCGATAC
Found at i:43782687 original size:47 final size:48
Alignment explanation
Indices: 43782596--43782776 Score: 175
Period size: 47 Copynumber: 3.9 Consensus size: 48
43782586 GGGGTAAGGT
* *
43782596 GTCGATGCCATGTCCCAGACATGGCCTTACAC-CAGCTCAT-ATCTCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGAGCT-ATCATCTCAA
* * *
43782643 GTCGATGCCATGTCTCATACATGGTCTTACACTGA-CTATCATCTCGTA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGAGCTATCATCTC-AA
* * *
43782691 GTTGATG-CATGTCCTAGACAT-GTCTTACACT-AGC-ATTCGTCTCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGAGCTA-TCATCTCAA
*
43782736 TATCG-TGCCATGTCCCAGACATGGTCTTACACTG-GCT-TCAT
1 -GTCGATGCCATGTCCCAGACATGGTCTTACACTGAGCTATCAT
43782777 AATGTGGCCG
Statistics
Matches: 109, Mismatches: 15, Indels: 21
0.75 0.10 0.14
Matches are distributed among these distances:
45 5 0.05
46 37 0.34
47 59 0.54
48 8 0.07
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.30
Consensus pattern (48 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGAGCTATCATCTCAA
Found at i:43784607 original size:29 final size:29
Alignment explanation
Indices: 43784526--43784640 Score: 117
Period size: 29 Copynumber: 4.0 Consensus size: 29
43784516 TATATAAATG
* *
43784526 CATATAGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCACTAGGCCCAATTCATATT
* **
43784554 CAAATGGCCCATCT-GGCCCGGTTCATATT
1 CATATGGCCCA-CTAGGCCCAATTCATATT
* **
43784583 CTTATGGCCCACTAGGCCCAATTCACCTT
1 CATATGGCCCACTAGGCCCAATTCATATT
* *
43784612 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCACTAGGCCCAATTCATATT
43784641 ATACTCATGC
Statistics
Matches: 68, Mismatches: 16, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
28 16 0.24
29 52 0.76
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAATTCATATT
Found at i:43784638 original size:58 final size:57
Alignment explanation
Indices: 43784532--43784640 Score: 132
Period size: 58 Copynumber: 1.9 Consensus size: 57
43784522 AATGCATATA
* ***
43784532 GCCCACTAGGCCCAATCTTATTCAAATGGCCCATCTGGCCCGGTTCATATTCTTATG
1 GCCCACTAGGCCCAATCTCATTCAAATGGCCCATCTGGCCCAAATCATATTCTTATG
*
43784589 GCCCACTAGGCCCAAT-TCACCTTCATATGGCCCAT-TAGGCCCAAATCATATT
1 GCCCACTAGGCCCAATCTCA--TTCAAATGGCCCATCT-GGCCCAAATCATATT
43784641 ATACTCATGC
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
56 2 0.05
57 17 0.39
58 25 0.57
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.28
Consensus pattern (57 bp):
GCCCACTAGGCCCAATCTCATTCAAATGGCCCATCTGGCCCAAATCATATTCTTATG
Found at i:43784883 original size:8 final size:8
Alignment explanation
Indices: 43784860--43784930 Score: 70
Period size: 8 Copynumber: 8.9 Consensus size: 8
43784850 CCCAACTTTC
43784860 GGCTTTTT
1 GGCTTTTT
*
43784868 GGCATTTT
1 GGCTTTTT
*
43784876 GACTTTTT
1 GGCTTTTT
*
43784884 GGCTTTTC
1 GGCTTTTT
* *
43784892 GGCATTTC
1 GGCTTTTT
43784900 GGCTTTTT
1 GGCTTTTT
*
43784908 GGCTTTTC
1 GGCTTTTT
* *
43784916 GGCATTTC
1 GGCTTTTT
43784924 GGCTTTT
1 GGCTTTT
43784931 GCTGATTCAT
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
8 52 1.00
ACGTcount: A:0.06, C:0.18, G:0.24, T:0.52
Consensus pattern (8 bp):
GGCTTTTT
Found at i:43784888 original size:24 final size:24
Alignment explanation
Indices: 43784860--43784930 Score: 106
Period size: 24 Copynumber: 3.0 Consensus size: 24
43784850 CCCAACTTTC
* *
43784860 GGCTTTTTGGCATTTTGACTTTTT
1 GGCTTTTCGGCATTTCGACTTTTT
*
43784884 GGCTTTTCGGCATTTCGGCTTTTT
1 GGCTTTTCGGCATTTCGACTTTTT
*
43784908 GGCTTTTCGGCATTTCGGCTTTT
1 GGCTTTTCGGCATTTCGACTTTT
43784931 GCTGATTCAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.06, C:0.18, G:0.24, T:0.52
Consensus pattern (24 bp):
GGCTTTTCGGCATTTCGACTTTTT
Found at i:43786935 original size:49 final size:49
Alignment explanation
Indices: 43786831--43786963 Score: 131
Period size: 49 Copynumber: 2.7 Consensus size: 49
43786821 CTTGTTGTGT
* *
43786831 GTTAGTGTAAGACCTATTTGGGACATGGCATCGACAGCGATAGATGAGA
1 GTTAGTGTAAGACCTATCTGGGACATGGCATCGACAGCGATAGATGAAA
* ** * * ** *
43786880 GCTAGTGTAAGACCTATCTGGGACATGTTATTGGCCTCGATATATGAAA
1 GTTAGTGTAAGACCTATCTGGGACATGGCATCGACAGCGATAGATGAAA
* * * * *
43786929 GTTAGTGTAAAACTTGTTTGGGACATGACATCGAC
1 GTTAGTGTAAGACCTATCTGGGACATGGCATCGAC
43786964 TTTAATGTGC
Statistics
Matches: 65, Mismatches: 19, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
49 65 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (49 bp):
GTTAGTGTAAGACCTATCTGGGACATGGCATCGACAGCGATAGATGAAA
Found at i:43789059 original size:40 final size:40
Alignment explanation
Indices: 43788989--43789210 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
43788979 AACCCAAGTA
*
43788989 CCTTCGGGAATTAG-CCGGATATAG-CAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
43789028 CCTTCAGGTCTTAGCCCGGATATAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
43789068 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
43789108 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
43789148 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
43789188 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
43789211 CATCCGAATA
Statistics
Matches: 169, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 11 0.07
40 157 0.93
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:43793306 original size:40 final size:40
Alignment explanation
Indices: 43793229--43793450 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
43793219 AACCCAAGTA
* *
43793229 CCTTCGGGAATTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
43793268 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
43793308 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
43793348 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
** *
43793388 CCTTCGAAACTTAGCCCGGATATAGTCACTAGCACAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
43793428 CCTTTGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
43793451 CATCCGAATA
Statistics
Matches: 167, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 12 0.07
40 154 0.92
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:43798233 original size:3 final size:3
Alignment explanation
Indices: 43798223--43798618 Score: 137
Period size: 3 Copynumber: 133.3 Consensus size: 3
43798213 GACGAAAACG
* * * * *
43798223 ATA A-A ATA ATA ATA TTG ATA ATA ATA ATA GAAA ATA AAA ATA AAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA
* *
43798268 ATA AT- ATA GA-A ATA GTA ATA A-A A-A AGA A-A AT- ATA ATA ATA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
43798308 ATA GTA ATA AT- ACA ATA GTA ATA ATA ATA AAA AGGT- ATA ATA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A--TA ATA ATA ATA
* * * * *
43798352 ATA TTA GATA GTA A-A A-A AAA ATA AAA ATA ATA ATA GTA ATA A-A
1 ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
43798395 A-A ATG ATA AT- GTG ATA TTA GTA GTA ATA ATA ATA ATA GGA-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA --ATA ATA
* * * * * *
43798439 ATA ATA TTA TATA CTA ATA ACA ACA ATA AT- ATGA AAA ATA AGAA ATA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA A-TA ATA
* * * * *
43798486 ACA ATA CACTA ATA AGA ATA CTA ATA GATCA CTA ATA ATA ATA GTA A-A
1 ATA ATA -A-TA ATA ATA ATA ATA ATA -AT-A ATA ATA ATA ATA ATA ATA
* * * * ** * * *
43798534 AAA ACTA AAA ATA ATA AT- ATA TTA CTA AGG GTA ATG ATG ATA ATA
1 ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
43798579 ATA ATA ATA ACA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
43798619 CATCTTAGAT
Statistics
Matches: 289, Mismatches: 73, Indels: 62
0.68 0.17 0.15
Matches are distributed among these distances:
2 33 0.11
3 233 0.81
4 19 0.07
5 4 0.01
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:43798287 original size:17 final size:17
Alignment explanation
Indices: 43798267--43798308 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
43798257 TAAAAATAAA
*
43798267 AATAATATAG-AAATAGT
1 AATAATAAAGAAAATA-T
*
43798284 AATAAAAAAGAAAATAT
1 AATAATAAAGAAAATAT
43798301 AATAATAA
1 AATAATAA
43798309 TAGTAATAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (17 bp):
AATAATAAAGAAAATAT
Found at i:43798297 original size:29 final size:29
Alignment explanation
Indices: 43798240--43798317 Score: 90
Period size: 29 Copynumber: 2.7 Consensus size: 29
43798230 AATAATATTG
*
43798240 ATAATAATAATAGAAAATAAAAATAAAAAT
1 ATAATAATAATAG-TAATAAAAATAAAAAT
43798270 A-ATATAGA-AATAGTAATAAAAA-AGAAAAT
1 ATA-ATA-ATAATAGTAATAAAAATA-AAAAT
43798299 ATAATAATAATAGTAATAA
1 ATAATAATAATAGTAATAA
43798318 TACAATAGTA
Statistics
Matches: 42, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
28 2 0.05
29 29 0.69
30 10 0.24
31 1 0.02
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.24
Consensus pattern (29 bp):
ATAATAATAATAGTAATAAAAATAAAAAT
Found at i:43798308 original size:37 final size:40
Alignment explanation
Indices: 43798246--43798386 Score: 62
Period size: 37 Copynumber: 3.8 Consensus size: 40
43798236 ATTGATAATA
43798246 ATAATAGAAAATAAAAAT--AAA-AATAATATAGA-AATA
1 ATAATAGAAAATAAAAATAAAAATAATAATATAGATAATA
* *
43798282 GTAATA-AAAA-AGAAAAT-ATAATAATAATAGTA-ATAAT-
1 ATAATAGAAAATA-AAAATAAAAATAATAATA-TAGATAATA
* * *
43798319 ACAATAG-TAATAATAATAAAAAGGT-AT-A-ATA-AT-ATA
1 ATAATAGAAAATAAAAATAAAAA--TAATAATATAGATAATA
*
43798355 TTAGATAGTAAAA-AAAAATAAAAATAATAATA
1 ATA-ATAG-AAAATAAAAATAAAAATAATAATA
43798387 GTAATAAAAA
Statistics
Matches: 77, Mismatches: 11, Indels: 31
0.65 0.09 0.26
Matches are distributed among these distances:
34 1 0.01
35 11 0.14
36 13 0.17
37 25 0.32
38 21 0.27
39 5 0.06
40 1 0.01
ACGTcount: A:0.67, C:0.01, G:0.07, T:0.26
Consensus pattern (40 bp):
ATAATAGAAAATAAAAATAAAAATAATAATATAGATAATA
Found at i:43798326 original size:14 final size:13
Alignment explanation
Indices: 43798295--43798334 Score: 57
Period size: 14 Copynumber: 3.2 Consensus size: 13
43798285 ATAAAAAAGA
43798295 AAATA-TAATAAT
1 AAATAGTAATAAT
43798307 -AATAGTAATAAT
1 AAATAGTAATAAT
43798319 ACAATAGTAATAAT
1 A-AATAGTAATAAT
43798333 AA
1 AA
43798335 TAAAAAGGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 4 0.16
12 7 0.28
13 1 0.04
14 13 0.52
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (13 bp):
AAATAGTAATAAT
Found at i:43798375 original size:28 final size:27
Alignment explanation
Indices: 43798243--43798404 Score: 86
Period size: 26 Copynumber: 6.0 Consensus size: 27
43798233 AATATTGATA
43798243 ATAATAATAG-AAAATAAAAATAAAAATAAT
1 ATAATAATAGTAAAA-AAAAAT---AATAAT
* *
43798273 ATAGA-AATAGTAATAAAAAAGAA-AAT
1 ATA-ATAATAGTAAAAAAAAATAATAAT
* ** * *
43798299 ATAATAATAAT-AGTAATAAT-ACAAT
1 ATAATAATAGTAAAAAAAAATAATAAT
* ***
43798324 AGTAATAATAATAAAAAGGTATAATAAT
1 A-TAATAATAGTAAAAAAAAATAATAAT
*
43798352 ATATTAGATAGTAAAAAAAAATAA-AA-
1 ATAATA-ATAGTAAAAAAAAATAATAAT
* *
43798378 ATAATAATAGTAATAAAAAATGATAAT
1 ATAATAATAGTAAAAAAAAATAATAAT
43798405 GTGATATTAG
Statistics
Matches: 101, Mismatches: 21, Indels: 23
0.70 0.14 0.16
Matches are distributed among these distances:
24 1 0.01
25 25 0.25
26 28 0.28
27 12 0.12
28 18 0.18
30 13 0.13
31 4 0.04
ACGTcount: A:0.66, C:0.01, G:0.07, T:0.26
Consensus pattern (27 bp):
ATAATAATAGTAAAAAAAAATAATAAT
Found at i:43800300 original size:44 final size:44
Alignment explanation
Indices: 43800252--43800587 Score: 127
Period size: 44 Copynumber: 7.6 Consensus size: 44
43800242 GAACTAATGA
43800252 TTTCAACCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAAT
1 TTTCAACCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAAT
* * * ** ** ** **
43800296 TTTCATCCTGTTACC-CTA-TGGCTTAGGGGGTTAAGGCCCATCGT
1 TTTCAACCTGCT-CCACTACT-GCTTAGGGAGACAAGATCTGTAAT
* * *
43800340 CTTTGATCC-GCTCCATTACTGCTTAGGGAGACAAGATCTGTAAT
1 -TTTCAACCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAAT
* * ** * * ** ** *
43800384 TTTTAGCCTG-TTAACTTATTGCTTAGGGGGTTAAGGCCCT-TCAT
1 TTTCAACCTGCTCCAC-TACTGCTTAGGGAGACAA-GATCTGTAAT
* * * *
43800428 CTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAAT
1 TTTCAACCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAAT
* * * * **
43800472 TTTCAGCTTGTTACC-CTACTGCTTAGGGGGTTAAGGCCATCTG---T
1 TTTCAACCTGCT-CCACTACTGCTTAGGGAGACAA-G--ATCTGTAAT
* * * * * *
43800516 CTTCGATCTGCTCCACTACTGGTTAGAGAGACAAGATATGTAACT
1 TTTCAACCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAA-T
43800561 TTT-AACCTGCTACC-CTACTGCTTAGGG
1 TTTCAACCTGCT-CCACTACTGCTTAGGG
43800588 GGTTAAGGCT
Statistics
Matches: 196, Mismatches: 76, Indels: 40
0.63 0.24 0.13
Matches are distributed among these distances:
41 4 0.02
43 17 0.09
44 147 0.75
45 24 0.12
47 4 0.02
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.33
Consensus pattern (44 bp):
TTTCAACCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAAT
Found at i:43800367 original size:88 final size:88
Alignment explanation
Indices: 43800259--43800596 Score: 475
Period size: 88 Copynumber: 3.8 Consensus size: 88
43800249 TGATTTCAAC
*
43800259 CTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTTCATCCTGTTACCCTA-TGGCTTAGG
1 CTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTACT-GCTTAGG
*
43800323 GGGTTAAGGCCCATCGTCTTTGAT
65 GGGTTAAGGCCCATCGTCTTCGAT
* * * * * *
43800347 CCGCTCCATTACTGCTTAGGGAGACAAGATCTGTAATTTTTAGCCTGTTAACTTATTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGG
* *
43800412 GGTTAAGGCCCTTCATCTTCGAT
66 GGTTAAGGCCCATCGTCTTCGAT
* *
43800435 CTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATTTTCAGCTTGTTACCCTACTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGG
43800500 GGTTAAGG-CCATCTGTCTTCGAT
66 GGTTAAGGCCCATC-GTCTTCGAT
* * * * *
43800523 CTGCTCCACTACTGGTTAGAGAGACAAGATATGTAACTTTT-AACCTGCTACCCTACTGCTTAGG
1 CTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAA-TTTTCAGCCTGTTACCCTACTGCTTAGG
43800587 GGGTTAAGGC
65 GGGTTAAGGC
43800597 TTACGAATCC
Statistics
Matches: 220, Mismatches: 26, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
87 4 0.02
88 211 0.96
89 5 0.02
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (88 bp):
CTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGG
GGTTAAGGCCCATCGTCTTCGAT
Found at i:43816496 original size:9 final size:9
Alignment explanation
Indices: 43816478--43816509 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
43816468 TGCAATGCTG
43816478 ATGC-ATGA
1 ATGCAATGA
43816486 ATGCAATGA
1 ATGCAATGA
43816495 ATGCAATGA
1 ATGCAATGA
43816504 ATGCAA
1 ATGCAA
43816510 AAAAGGTGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 4 0.17
9 19 0.83
ACGTcount: A:0.44, C:0.12, G:0.22, T:0.22
Consensus pattern (9 bp):
ATGCAATGA
Found at i:43816916 original size:22 final size:22
Alignment explanation
Indices: 43816874--43816916 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
43816864 TAGCGCTGCC
* *
43816874 TTAAGTTCTTCTATCTTCTCTT
1 TTAAGTTCTTCAATCTGCTCTT
43816896 TTAA-TTCTTCAATTCTGCTCT
1 TTAAGTTCTTCAA-TCTGCTCT
43816917 GACTAGCCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.16, C:0.23, G:0.05, T:0.56
Consensus pattern (22 bp):
TTAAGTTCTTCAATCTGCTCTT
Found at i:43820371 original size:3 final size:3
Alignment explanation
Indices: 43820365--43820789 Score: 173
Period size: 3 Copynumber: 141.7 Consensus size: 3
43820355 GACGAAAACG
* * * *
43820365 ATA ATA ATA ATA ATA ATA ATA ATA TTG ATA AAA ATA ATA GAAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA
* * * * *
43820411 AAA ATA A-A ATA ATA CAGAA ATA GTA ATA A-A AAA AGA A-A AT- ATA
1 ATA ATA ATA ATA ATA -A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
43820454 ATA ATA ATA GTA ATA AT- ACA ATA GTA ATA ATA ATA AAA AGGT- ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A--TA ATA
* * *
43820499 ATA AT- ATA TTA GATA GTA A-A AAA ATA A-A A-A ATA A-A ATA ATA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
43820540 ATA ATA ATA ATA GTA ATA GTA ATA GTA ATA A-A AAA ATG ATA ATA GTG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
43820587 ATA TTA ATA GTA ATA ATA ATA GGA-A ACA ATA ATA ATA TATA CTA GTA
1 ATA ATA ATA ATA ATA ATA ATA --ATA ATA ATA ATA ATA -ATA ATA ATA
** * * * * *
43820634 GCA ACA ATA AT- ATGA AAA ATA AGAA ATA ACA ATA CACTA ATA AGA ATA
1 ATA ATA ATA ATA AT-A ATA ATA A-TA ATA ATA ATA -A-TA ATA ATA ATA
* *
43820682 GTA ATA GATCA CTA ATA ATA ATA GCA-A ATA ATA ATA ATA ATA ATA A-A
1 ATA ATA -AT-A ATA ATA ATA ATA --ATA ATA ATA ATA ATA ATA ATA ATA
* * ** * * * *
43820729 TTA CTA AGG GTA ATG ATA ATA AAA ATA GTA AT- ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
43820776 ATA ATA ATA ATA AT
1 ATA ATA ATA ATA AT
43820790 GATGATGATG
Statistics
Matches: 311, Mismatches: 78, Indels: 66
0.68 0.17 0.15
Matches are distributed among these distances:
2 29 0.09
3 256 0.82
4 20 0.06
5 6 0.02
ACGTcount: A:0.62, C:0.03, G:0.08, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:43820468 original size:44 final size:44
Alignment explanation
Indices: 43820365--43820602 Score: 158
Period size: 44 Copynumber: 5.4 Consensus size: 44
43820355 GACGAAAACG
* * * *
43820365 ATAATAATAATAATAATAA-TAATATTGATAAAAATAATAGAAAAT
1 ATAATAATAATAGTAATAAGAAATAGTAAT-AAAATAA-AGAAAAT
*
43820410 A-AA-AATAA-AATAATACAGAAATAGTAATAAAA-AAAGAAAAT
1 ATAATAATAATAGTAATA-AGAAATAGTAATAAAATAAAGAAAAT
* **
43820451 ATAATAATAATAGTAATAATACAATAGTAATAATAATAAA-AAGGT
1 ATAATAATAATAGTAATAAGA-AATAGTAATAA-AATAAAGAAAAT
* * *
43820496 ATAATAATATATTAGATAGTAA-AAA-AATAA-AAAATAAA-ATAAT
1 ATAATAATA-A-TAG-TAATAAGAAATAGTAATAAAATAAAGAAAAT
* *
43820539 AATAATAATAATAGTAAT-AGTAATAGTAATAAAA-AAATGATAAT
1 -ATAATAATAATAGTAATAAGAAATAGTAATAAAATAAA-GAAAAT
* *
43820583 AGTGATATTAATAGTAATAA
1 A-TAATAATAATAGTAATAA
43820603 TAATAGGAAA
Statistics
Matches: 157, Mismatches: 17, Indels: 38
0.74 0.08 0.18
Matches are distributed among these distances:
40 1 0.01
41 13 0.08
42 21 0.13
43 31 0.20
44 56 0.36
45 20 0.13
46 6 0.04
47 4 0.03
48 5 0.03
ACGTcount: A:0.64, C:0.01, G:0.08, T:0.28
Consensus pattern (44 bp):
ATAATAATAATAGTAATAAGAAATAGTAATAAAATAAAGAAAAT
Found at i:43820476 original size:20 final size:20
Alignment explanation
Indices: 43820365--43820787 Score: 80
Period size: 20 Copynumber: 21.6 Consensus size: 20
43820355 GACGAAAACG
43820365 ATAATAATAAT--AATAATA
1 ATAATAATAATACAATAATA
* *
43820383 ATAATATTGATA-AA-AATA
1 ATAATAATAATACAATAATA
*
43820401 ATAGAAAATAA-A-AATAA-A
1 ATA-ATAATAATACAATAATA
* *
43820419 ATAATACAGAAATAGTAATAA-A
1 ATAATA-A-TAATA-CAATAATA
* * *
43820441 AAAAGAA-AATATAATAATA
1 ATAATAATAATACAATAATA
* *
43820460 ATAGTAATAATACAATAGTA
1 ATAATAATAATACAATAATA
43820480 ATAATAATAA-A-AAGGT-ATA
1 ATAATAATAATACAA--TAATA
* *
43820499 ATAATATATTAGATAGTAA-AAAA
1 ATAATA-A-TA-ATA-CAATAATA
*
43820522 ATAA-AA-AATAAAATAATA
1 ATAATAATAATACAATAATA
* *
43820540 ATAATAATAATAGTAATAGTA
1 ATAATAATAATA-CAATAATA
* *
43820561 ATAGTAATAA-A-AA-AATG
1 ATAATAATAATACAATAATA
* * * *
43820578 ATAATAGTGATATTAATAGTA
1 ATAATAATAATA-CAATAATA
*
43820599 ATAATAATAGGAAACAATAATA
1 ATAATAATA--ATACAATAATA
* * *
43820621 ATATATACTAGTAGCAACAATA
1 ATA-ATAATAATA-CAATAATA
* *
43820643 AT-AT--GAA-A-AATAA-G
1 ATAATAATAATACAATAATA
* *
43820657 A-AATAACAATACACTAATA
1 ATAATAATAATACAATAATA
* * * *
43820676 AGAATAGTAATA-GATCACTA
1 ATAATAATAATACAAT-AATA
**
43820696 ATAATAATAGCA-AATAATA
1 ATAATAATAATACAATAATA
*
43820715 ATAATAATAATA-AATTACTA
1 ATAATAATAATACAA-TAATA
*
43820735 AGGGTAATGATAATA-AA-AATA
1 A---TAATAATAATACAATAATA
* *
43820756 GTAAT-ATAATAATAATAATA
1 ATAATAATAAT-ACAATAATA
43820776 ATAATAATAATA
1 ATAATAATAATA
43820788 ATGATGATGA
Statistics
Matches: 295, Mismatches: 63, Indels: 92
0.66 0.14 0.20
Matches are distributed among these distances:
14 3 0.01
15 4 0.01
16 2 0.01
17 20 0.07
18 55 0.19
19 50 0.17
20 66 0.22
21 37 0.13
22 30 0.10
23 26 0.09
25 2 0.01
ACGTcount: A:0.62, C:0.03, G:0.08, T:0.27
Consensus pattern (20 bp):
ATAATAATAATACAATAATA
Found at i:43820478 original size:14 final size:13
Alignment explanation
Indices: 43820447--43820486 Score: 57
Period size: 14 Copynumber: 3.2 Consensus size: 13
43820437 TAAAAAAAGA
43820447 AAATA-TAATAAT
1 AAATAGTAATAAT
43820459 -AATAGTAATAAT
1 AAATAGTAATAAT
43820471 ACAATAGTAATAAT
1 A-AATAGTAATAAT
43820485 AA
1 AA
43820487 TAAAAAGGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 4 0.16
12 7 0.28
13 1 0.04
14 13 0.52
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (13 bp):
AAATAGTAATAAT
Found at i:43821296 original size:17 final size:17
Alignment explanation
Indices: 43821274--43821307 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
43821264 TCATTTTTAC
43821274 TTCATTCTCTTCAAAAA
1 TTCATTCTCTTCAAAAA
*
43821291 TTCATTCTTTTCAAAAA
1 TTCATTCTCTTCAAAAA
43821308 ATAAAAGGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.21, G:0.00, T:0.44
Consensus pattern (17 bp):
TTCATTCTCTTCAAAAA
Found at i:43826680 original size:23 final size:23
Alignment explanation
Indices: 43826650--43826696 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
43826640 CCTCGGGATA
43826650 TACAAGCTAGTGTAAGACCTGTC
1 TACAAGCTAGTGTAAGACCTGTC
43826673 TACAAGCTAGTGTAAGACCTGTC
1 TACAAGCTAGTGTAAGACCTGTC
43826696 T
1 T
43826697 GGGACATGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (23 bp):
TACAAGCTAGTGTAAGACCTGTC
Found at i:43832702 original size:37 final size:37
Alignment explanation
Indices: 43832652--43832726 Score: 107
Period size: 37 Copynumber: 2.0 Consensus size: 37
43832642 TTATTACGAA
* *
43832652 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAAGTC-CCACACGAAGTCATCGG
*
43832689 GTCTTACCCGGACAAAAGTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAAGTCCCACACGAAGTCATCGG
43832726 G
1 G
43832727 CCTTTAGAGC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 32 0.94
38 2 0.06
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.21
Consensus pattern (37 bp):
GTCTTACCCGGACAAAAGTCCCACACGAAGTCATCGG
Found at i:43832927 original size:47 final size:47
Alignment explanation
Indices: 43832849--43833333 Score: 781
Period size: 47 Copynumber: 10.3 Consensus size: 47
43832839 CCCTTCGGGA
* * * * * * *
43832849 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
43832896 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
43832943 CTTATCACATTTATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
43832990 CTTATTACATATATACACTTTCACATTCATCACATTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
43833037 CTTATCACACATATGCACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
43833084 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
43833131 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
43833178 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
43833225 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
43833272 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
43833319 CTTATCACATATATA
1 CTTATCACATATATA
43833334 AACTGTGTTG
Statistics
Matches: 407, Mismatches: 31, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 407 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:43838767 original size:8 final size:9
Alignment explanation
Indices: 43838746--43838770 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
43838736 CCCTAAGGGG
43838746 TTTTTATTA
1 TTTTTATTA
43838755 TTTTTATTA
1 TTTTTATTA
43838764 TTTTTAT
1 TTTTTAT
43838771 GAGGTTATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTTTATTA
Found at i:43840062 original size:47 final size:45
Alignment explanation
Indices: 43839999--43840216 Score: 153
Period size: 47 Copynumber: 4.7 Consensus size: 45
43839989 ATGATGGCCC
*
43839999 GTGTAAGACCACGTCTGGGACATGGCATCGGTGTAGAGGTGAGTGCCA
1 GTGTAAGACCATGTCTGGGACAT-GCATCGGT-TA-AGGTGAGTGCCA
*
43840047 GTGTAAGA-CATGTCTGGGACATACATCGGCTTCAA--TGATGTTAGCCA
1 GTGTAAGACCATGTCTGGGACATGCATCGG-TT-AAGGTGA-G-T-GCCA
* * ** *
43840094 GTGTAAGA-CGTGTCTGGGACATGCATCGGTTAAGTTTCGTGCTA
1 GTGTAAGACCATGTCTGGGACATGCATCGGTTAAGGTGAGTGCCA
* * * *
43840138 GTGTAAGA-CGTGTTTGGGACATGCATCAGCACGTATACA--TGAGAGCTA
1 GTGTAAGACCATGTCTGGGACATGCATC-G---GT-TA-AGGTGAGTGCCA
43840186 GTGTAAGACCATGTCTGGGACATGGCATCGG
1 GTGTAAGACCATGTCTGGGACAT-GCATCGG
43840217 CCTCGATGGA
Statistics
Matches: 142, Mismatches: 13, Indels: 32
0.76 0.07 0.17
Matches are distributed among these distances:
44 32 0.23
45 5 0.04
46 13 0.09
47 47 0.33
48 24 0.17
49 15 0.11
50 6 0.04
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.26
Consensus pattern (45 bp):
GTGTAAGACCATGTCTGGGACATGCATCGGTTAAGGTGAGTGCCA
Found at i:43840109 original size:94 final size:93
Alignment explanation
Indices: 43839901--43840216 Score: 334
Period size: 93 Copynumber: 3.4 Consensus size: 93
43839891 GTTATGTGAG
* * *
43839901 AGCCAGTATAAGACCATGTCTGGGACATGGCATCGGATT-GAGATGAGGGCTAGTGTAAGATGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-TTAGAGATGAGTGCTAGTGTAAGACGTG
* *
43839965 TCTAGGACATGCATTAGCCGCATCATGAT
65 TCTGGGACATGCATCAGCCGCATCATGAT
* * * * * *
43839994 GGCCCGTGTAAGACCACGTCTGGGACATGGCATCGGTGTAGAGGTGAGTGCCAGTGTAAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGT-TAGAGATGAGTGCTAGTGTAAGACGTG
* * ** * *
43840059 TCTGGGACATACATCGGCTTCAATGATGTT
65 TCTGGGACATGCATCAGCCGC-ATCATGAT
* * **
43840089 AGCCAGTGTAAGA-CGTGTCTGGGACAT-GCATCGGTTA-AGTTTCGTGCTAGTGTAAGACGTGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTTAGAGATGAGTGCTAGTGTAAGACGTGT
* * *
43840151 TTGGGACATGCATCAGCACGTATACATGAG
66 CTGGGACATGCATCAGC-CGCAT-CATGAT
*
43840181 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
43840217 CCTCGATGGA
Statistics
Matches: 179, Mismatches: 37, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
91 36 0.20
92 18 0.10
93 54 0.30
94 54 0.30
95 17 0.09
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.25
Consensus pattern (93 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTTAGAGATGAGTGCTAGTGTAAGACGTGT
CTGGGACATGCATCAGCCGCATCATGAT
Found at i:43840565 original size:40 final size:40
Alignment explanation
Indices: 43840510--43840630 Score: 242
Period size: 40 Copynumber: 3.0 Consensus size: 40
43840500 GAAGTTGTCG
43840510 TTGTATATATATTTATATGCAACTTACTAAGCTTTATGCT
1 TTGTATATATATTTATATGCAACTTACTAAGCTTTATGCT
43840550 TTGTATATATATTTATATGCAACTTACTAAGCTTTATGCT
1 TTGTATATATATTTATATGCAACTTACTAAGCTTTATGCT
43840590 TTGTATATATATTTATATGCAACTTACTAAGCTTTATGCT
1 TTGTATATATATTTATATGCAACTTACTAAGCTTTATGCT
43840630 T
1 T
43840631 ACTCTCTTTC
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 81 1.00
ACGTcount: A:0.30, C:0.12, G:0.10, T:0.48
Consensus pattern (40 bp):
TTGTATATATATTTATATGCAACTTACTAAGCTTTATGCT
Found at i:43843535 original size:25 final size:26
Alignment explanation
Indices: 43843504--43843553 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
43843494 TTACCATCTT
* *
43843504 AGCTCAATA-GAGCTTACTGTTCATC
1 AGCTCAAGAGGAGCTTACTGATCATC
43843529 AGCTCAAGAGGAGCTTACTGATCAT
1 AGCTCAAGAGGAGCTTACTGATCAT
43843554 GGCTCGAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (26 bp):
AGCTCAAGAGGAGCTTACTGATCATC
Found at i:43845150 original size:46 final size:46
Alignment explanation
Indices: 43845003--43845221 Score: 196
Period size: 46 Copynumber: 4.7 Consensus size: 46
43844993 TTATTTGTGT
* * * * *
43845003 GCCAGTGAAAGACAAGTCTGGGACATGCATCGGCCAC-A-TTGCGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-TA-A
* * * *
43845049 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGATGAAA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAA
* *
43845097 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATGTAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAA
*
43845143 TCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGT--
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAA
* * * *
43845187 GTCAATATAAGACCATGTCTAGGACATGGCATCGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG
43845222 TACGTATAGT
Statistics
Matches: 144, Mismatches: 22, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
44 8 0.06
45 15 0.10
46 72 0.50
47 26 0.18
48 19 0.13
49 2 0.01
50 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAA
Found at i:43846405 original size:13 final size:13
Alignment explanation
Indices: 43846387--43846414 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
43846377 ACGGAGACGA
43846387 GCAATAGGCATGG
1 GCAATAGGCATGG
43846400 GCAATAGGCATGG
1 GCAATAGGCATGG
43846413 GC
1 GC
43846415 GTGTGTCAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.18, G:0.39, T:0.14
Consensus pattern (13 bp):
GCAATAGGCATGG
Found at i:43848770 original size:46 final size:47
Alignment explanation
Indices: 43848718--43848881 Score: 201
Period size: 46 Copynumber: 3.5 Consensus size: 47
43848708 CTCGTAGCCG
*
43848718 ATGCATGTCCCAGACATGTCTTACACTGGCT-T-ATGTTTCAAGGCCA
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTCAT-TATCAAGGCCA
* * *
43848764 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCA-TCTCAATGCCA
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATTATCAAGGCCA
* * * *
43848810 ATGCCATGTCCTAGATATGATCTTACACTGGCTCTCATAAT-ATGGCCA
1 ATG-CATGTCCCAGACATG-TCTTACACTGGCTCTCATTATCAAGGCCA
43848858 ATGCATGTCCCAGACATGTCTTAC
1 ATGCATGTCCCAGACATGTCTTAC
43848882 GCTAGCCAAC
Statistics
Matches: 101, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
46 48 0.48
47 27 0.27
48 25 0.25
49 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (47 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATTATCAAGGCCA
Found at i:43848879 original size:140 final size:140
Alignment explanation
Indices: 43848627--43848881 Score: 336
Period size: 140 Copynumber: 1.8 Consensus size: 140
43848617 GCACCGATGT
* *** *
43848627 CATGTCCTAGACATGGTCTTACACTAGCTCACATCTCAATTTGATGCCATGTTCCAGACATGGTC
1 CATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAATCCAATGCCATGTTCCAGACATGATC
* * *
43848692 TAACACTGACTATCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTATGTTTC
66 TAACACTGACTATCATATCATAGCCAATGCATGTCCCAGACATGTCTTACACTGGCTTATGTTTC
43848757 AAGGCCAATG
131 AAGGCCAATG
* *
43848767 CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCAATGCCAATGCCATG-TCCTAGATATGA
1 CATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAAT-CCAATGCCATGTTCC-AGACATGA
* * * *
43848830 TCTTACACTGGCTCTCATAAT-ATGGCCAATGCATGTCCCAGACATGTCTTAC
64 TCTAACACTGACTATCAT-ATCATAGCCAATGCATGTCCCAGACATGTCTTAC
43848882 GCTAGCCAAC
Statistics
Matches: 98, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
139 27 0.28
140 70 0.71
141 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.30
Consensus pattern (140 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAATCCAATGCCATGTTCCAGACATGATC
TAACACTGACTATCATATCATAGCCAATGCATGTCCCAGACATGTCTTACACTGGCTTATGTTTC
AAGGCCAATG
Found at i:43855766 original size:46 final size:43
Alignment explanation
Indices: 43855709--43855823 Score: 142
Period size: 46 Copynumber: 2.5 Consensus size: 43
43855699 GAAGAGAGCT
43855709 AGTGTAAGACATGTCTAGGACATGAATCGGCCT-CGAGATGTAAGCC
1 AGTGTAAGACATGTCT-GGACATGAATCGG-CTACGAGATGT--GCC
* *
43855755 AGTGTAAGACATGTCTGGAACATGCATCGGCTACGAGATGTGTC
1 AGTGTAAGACATGTCTGG-ACATGAATCGGCTACGAGATGTGCC
43855799 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCT-GGACATG
43855824 GCATTGGCAC
Statistics
Matches: 63, Mismatches: 2, Indels: 9
0.85 0.03 0.12
Matches are distributed among these distances:
44 11 0.17
45 16 0.25
46 36 0.57
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (43 bp):
AGTGTAAGACATGTCTGGACATGAATCGGCTACGAGATGTGCC
Found at i:43855846 original size:140 final size:142
Alignment explanation
Indices: 43855614--43855971 Score: 401
Period size: 140 Copynumber: 2.5 Consensus size: 142
43855604 ATTTGTGTGT
* * * *
43855614 CAGTGTAAGACATGTTTGGGACATGCATCGGCAAC-ATTATGAGAGCCAGTGTAAGACCATGTTT
1 CAGTGTAAGACATGTCTGGGACATGCATCGGCTACGATGAT--GAGCCAGTGTAAGACCATGTCT
**
43855678 GGGACATGGCATTGGCATTGAGAAGAGAGCTAGTGTAAGA-CATGTCTAGG-ACAT-GAATCGGC
64 GGGACATGGCATTGGCACGGAGAAGAGAGCTAGTGTAAGACCATGT-TAGGCACATGGAATCGGC
43855740 CTCGAGA-TGT-A-AGC
128 CTC-A-ATTGTGATAGC
* * *
43855754 CAGTGTAAGACATGTCTGGAACATGCATCGGCTACGA-GATGTGTCAGTGTAAGACCATGTCTGG
1 CAGTGTAAGACATGTCTGGGACATGCATCGGCTACGATGATGAGCCAGTGTAAGACCATGTCTGG
* * * * *
43855818 GACATGGCATTGGCACGGATATGTGAGAGGTAGTGTAAGACCATGTTTGGCACATGGCATCGGCC
66 GACATGGCATTGGCACGGAGA--AGAGAGCTAGTGTAAGACCATGTTAGGCACATGGAATCGGCC
* *
43855883 TCAATTTTGATAGT
129 TCAATTGTGATAGC
* *
43855897 CAGTGTAAGACCATGTCTGGGACATGGCATTGGCT-TGATGGATGAGCCAGTGTAAGACCATGTC
1 CAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAT-GATGAGCCAGTGTAAGACCATGTC
43855961 TGGGACATGGC
63 TGGGACATGGC
43855972 TTCAGCATTA
Statistics
Matches: 184, Mismatches: 21, Indels: 20
0.82 0.09 0.09
Matches are distributed among these distances:
138 39 0.21
140 53 0.29
141 13 0.07
142 11 0.06
143 12 0.07
144 15 0.08
145 8 0.04
146 33 0.18
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (142 bp):
CAGTGTAAGACATGTCTGGGACATGCATCGGCTACGATGATGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATTGGCACGGAGAAGAGAGCTAGTGTAAGACCATGTTAGGCACATGGAATCGGCCTC
AATTGTGATAGC
Found at i:43861213 original size:16 final size:18
Alignment explanation
Indices: 43861178--43861214 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
43861168 TTTTTCAATG
*
43861178 AAAATTATATAAATACAT
1 AAAATAATATAAATACAT
43861196 AAAATAATA-AAATA-AT
1 AAAATAATATAAATACAT
43861212 AAA
1 AAA
43861215 TATTGTTGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 5 0.28
17 5 0.28
18 8 0.44
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (18 bp):
AAAATAATATAAATACAT
Found at i:43862579 original size:20 final size:20
Alignment explanation
Indices: 43862542--43862602 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
43862532 ACTAATTCTA
*
43862542 TTGTCTCTTTTCTTTTCTTT
1 TTGTCTCTTTCCTTTTCTTT
43862562 TTGT-TCTTTCCTTGTTCTTT
1 TTGTCTCTTTCCTT-TTCTTT
**
43862582 ATT-TC-CTTTGTTTTTCTTT
1 -TTGTCTCTTTCCTTTTCTTT
43862601 TT
1 TT
43862603 ATATTTTTAC
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
18 2 0.06
19 14 0.40
20 17 0.49
21 2 0.06
ACGTcount: A:0.02, C:0.18, G:0.07, T:0.74
Consensus pattern (20 bp):
TTGTCTCTTTCCTTTTCTTT
Found at i:43875978 original size:19 final size:19
Alignment explanation
Indices: 43875941--43875978 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
43875931 ACCTATCAGA
*
43875941 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
43875960 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
43875979 TAAGTTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:43877931 original size:26 final size:26
Alignment explanation
Indices: 43877899--43877948 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
43877889 AAGAAGAAAA
43877899 AATTATTCTAACACATGCATGCTAAG
1 AATTATTCTAACACATGCATGCTAAG
43877925 AATTATTCTAACACATGCATGCTA
1 AATTATTCTAACACATGCATGCTA
43877949 TTGTGATTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (26 bp):
AATTATTCTAACACATGCATGCTAAG
Found at i:43887492 original size:28 final size:27
Alignment explanation
Indices: 43887435--43887486 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
43887425 TAAAACTACT
* *
43887435 TTTTATTTTTATTATTAGATTTTAGAA
1 TTTTATTTTTATTATCAGATTTCAGAA
43887462 TTTTATTTTTAATTATCA-ATTTCAG
1 TTTTATTTTT-ATTATCAGATTTCAG
43887487 TTATTTCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 16 0.73
28 6 0.27
ACGTcount: A:0.29, C:0.04, G:0.06, T:0.62
Consensus pattern (27 bp):
TTTTATTTTTATTATCAGATTTCAGAA
Found at i:43890286 original size:28 final size:28
Alignment explanation
Indices: 43890224--43890404 Score: 328
Period size: 28 Copynumber: 6.5 Consensus size: 28
43890214 TATTAAGTCT
* *
43890224 GCACACTCAGTGCTATATAATC-AACTC
1 GCACACTTAGTGCTACATAATCAAACTC
*
43890251 GCACACTTAGTGCTATATAATCAAACTC
1 GCACACTTAGTGCTACATAATCAAACTC
43890279 GCACACTTAGTGCTACATAATCAAACTC
1 GCACACTTAGTGCTACATAATCAAACTC
43890307 GCACACTTAGTGCTACATAATCAAACTC
1 GCACACTTAGTGCTACATAATCAAACTC
43890335 GCACACTTAGTGCTACATAATCAAACTC
1 GCACACTTAGTGCTACATAATCAAACTC
43890363 GCACACTTAGTGCTACATAATCAAACTC
1 GCACACTTAGTGCTACATAATCAAACTC
43890391 GCACACTTAGTGCT
1 GCACACTTAGTGCT
43890405 GTACAATTTA
Statistics
Matches: 151, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
27 21 0.14
28 130 0.86
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
GCACACTTAGTGCTACATAATCAAACTC
Found at i:43911604 original size:43 final size:43
Alignment explanation
Indices: 43911542--43911798 Score: 164
Period size: 43 Copynumber: 6.1 Consensus size: 43
43911532 ACATATCGTA
* * *
43911542 CAATGCCAACATTCCAGACGTGGTCTTATATGTAATCACATAT
1 CAATGCCAACATTCCAGACGTCGTCTTACACGTAATCACATAT
*
43911585 CAATGCCAAC-TTCTTAGACGTCGTCTTACACGTAATCACATAT
1 CAATGCCAACATTC-CAGACGTCGTCTTACACGTAATCACATAT
* *
43911628 CAATGCC-AC-TGTCCCAAACAG--G--GTACACGTAATCACATAT
1 CAATGCCAACAT-T-CCAGAC-GTCGTCTTACACGTAATCACATAT
* * * *
43911668 CGATGCC-AC-TGTCTCGGATAG-GGTCTTACACGTAATCACATAT
1 CAATGCCAACAT-TC-CAGA-CGTCGTCTTACACGTAATCACATAT
* * * * *
43911711 CGATGCCAACGTCCCAAACGTGGTCTTACACGTAATCACATAT
1 CAATGCCAACATTCCAGACGTCGTCTTACACGTAATCACATAT
* * *
43911754 CGATGCC-AC-TGTGCTAGACAG-GGTCTTACAC-TAATCACATAT
1 CAATGCCAACAT-T-CCAGAC-GTCGTCTTACACGTAATCACATAT
43911796 CAA
1 CAA
43911799 AAATCCTATG
Statistics
Matches: 179, Mismatches: 20, Indels: 31
0.78 0.09 0.13
Matches are distributed among these distances:
39 1 0.01
40 31 0.17
41 2 0.01
42 23 0.13
43 115 0.64
44 6 0.03
45 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (43 bp):
CAATGCCAACATTCCAGACGTCGTCTTACACGTAATCACATAT
Found at i:43911775 original size:126 final size:126
Alignment explanation
Indices: 43911563--43911796 Score: 326
Period size: 126 Copynumber: 1.8 Consensus size: 126
43911553 TTCCAGACGT
* * * ** *
43911563 GGTCTTATATGTAATCACATATCAATGCCAACTTCTTAGACGTCGTCTTACACGTAATCACATAT
1 GGTCTTACACGTAATCACATATCAATGCCAACGTCCCAAACGTCGTCTTACACGTAATCACATAT
43911628 CAATGCCACTGTCCCAAACAGGG-TACACGTAATCACATATCGATGCCACTGTCTCGGATAG
66 CAATGCCACTGTCCCAAACAGGGTTACAC-TAATCACATATCGATGCCACTGTCTCGGATAG
* *
43911689 GGTCTTACACGTAATCACATATCGATGCCAACGTCCCAAACGTGGTCTTACACGTAATCACATAT
1 GGTCTTACACGTAATCACATATCAATGCCAACGTCCCAAACGTCGTCTTACACGTAATCACATAT
* * * *
43911754 CGATGCCACTGTGCTAGACAGGGTCTTACACTAATCACATATC
66 CAATGCCACTGTCCCAAACAGGG--TTACACTAATCACATATC
43911797 AAAAATCCTA
Statistics
Matches: 93, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
126 76 0.82
128 12 0.13
129 5 0.05
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (126 bp):
GGTCTTACACGTAATCACATATCAATGCCAACGTCCCAAACGTCGTCTTACACGTAATCACATAT
CAATGCCACTGTCCCAAACAGGGTTACACTAATCACATATCGATGCCACTGTCTCGGATAG
Found at i:43912115 original size:15 final size:15
Alignment explanation
Indices: 43912095--43912125 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
43912085 GGTTCTTGAT
43912095 CTAAACATATTCAAA
1 CTAAACATATTCAAA
*
43912110 CTAAACTTATTCAAA
1 CTAAACATATTCAAA
43912125 C
1 C
43912126 AAAAATTCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.29
Consensus pattern (15 bp):
CTAAACATATTCAAA
Found at i:43912610 original size:6 final size:6
Alignment explanation
Indices: 43912599--43912624 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
43912589 TGAATGTTGC
43912599 TTTCTT TTTCTT TTTCTT TTTCTT TT
1 TTTCTT TTTCTT TTTCTT TTTCTT TT
43912625 GGTATTTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTCTT
Found at i:43920978 original size:48 final size:48
Alignment explanation
Indices: 43920926--43921111 Score: 228
Period size: 48 Copynumber: 3.9 Consensus size: 48
43920916 GTGTTCCAAG
* *
43920926 CATGGTCTTATAGTAGCTCACATATCGATGCCGATGCCATGTCCCACA
1 CATGGTCTTACAGTAGCTCACATATCGAGGCCGATGCCATGTCCCACA
* *
43920974 CATGGTCTTACATTGGCTCACATATCGAGGCCGATGCCATGTCCCACA
1 CATGGTCTTACAGTAGCTCACATATCGAGGCCGATGCCATGTCCCACA
* * ** * **
43921022 CATGGTCTTACACTACCTCACATATCGAGGCTAATGCCATGTCTCGGA
1 CATGGTCTTACAGTAGCTCACATATCGAGGCCGATGCCATGTCCCACA
* * * * *
43921070 CATGTTTTTACAGTAGCTCTCATATCAATGCCGATGCCATGT
1 CATGGTCTTACAGTAGCTCACATATCGAGGCCGATGCCATGT
43921112 TCCTTTACAC
Statistics
Matches: 117, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 117 1.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
CATGGTCTTACAGTAGCTCACATATCGAGGCCGATGCCATGTCCCACA
Found at i:43921062 original size:96 final size:96
Alignment explanation
Indices: 43920857--43921111 Score: 244
Period size: 96 Copynumber: 2.6 Consensus size: 96
43920847 AGAGTAAGAT
* * ** * * *
43920857 GCTAATGCCATGTCCCAGACATGGCCTTACACTGGCTCTCATATATCG-GTGTTGATGTCGTGTT
1 GCTAATGCCATGTCCCAGACATGGTCTTACACTGG--CTCACATATCGAG-GCCGATGCCATGTC
* * * *
43920921 CCAAGCATGGTCTTATAGTAGCTCACATATCGAT
63 CCAAGCATGGTCTTACACTACCTCACATATCGAG
** * *
43920955 GCCGATGCCATGTCCCACACATGGTCTTACATTGGCTCACATATCGAGGCCGATGCCATGTCCCA
1 GCTAATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGCCGATGCCATGTCCCA
43921020 CA-CATGGTCTTACACTACCTCACATATCGAG
66 -AGCATGGTCTTACACTACCTCACATATCGAG
* * * * * * * * *
43921051 GCTAATGCCATGTCTCGGACATGTTTTTACAGTAGCTCTCATATCAATGCCGATGCCATGT
1 GCTAATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGCCGATGCCATGT
43921112 TCCTTTACAC
Statistics
Matches: 128, Mismatches: 27, Indels: 6
0.80 0.17 0.04
Matches are distributed among these distances:
96 96 0.75
97 2 0.02
98 30 0.23
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (96 bp):
GCTAATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAGGCCGATGCCATGTCCCA
AGCATGGTCTTACACTACCTCACATATCGAG
Found at i:43924652 original size:91 final size:90
Alignment explanation
Indices: 43924494--43924671 Score: 293
Period size: 91 Copynumber: 2.0 Consensus size: 90
43924484 TTGCTTATGA
* *
43924494 GTTGGGTTTTTAAAGCAAGATACTTCTCTAATGTGGATTTTTTGCGGGAGGAACTGGGATCTCAC
1 GTTGGGTTTTTAAAGCAAGATACTTCTCTAATGTGGATTTTTTACGGGAGGAACTGGGATCTAAC
43924559 CTGTTTTATACCTAGCGTAGCATTTG
66 CTGTTTTATACCTAGC-TAGCATTTG
* * * *
43924585 GTTGGGTTTTTAAAGTAAGATACTTTTCTAATGTGGATTTTTTATGGGTGGAACTGGGATCTAAC
1 GTTGGGTTTTTAAAGCAAGATACTTCTCTAATGTGGATTTTTTACGGGAGGAACTGGGATCTAAC
43924650 CTGTTTTATACCTAGCTAGCAT
66 CTGTTTTATACCTAGCTAGCAT
43924672 CTAGTGCTTT
Statistics
Matches: 81, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
90 6 0.07
91 75 0.93
ACGTcount: A:0.23, C:0.13, G:0.24, T:0.39
Consensus pattern (90 bp):
GTTGGGTTTTTAAAGCAAGATACTTCTCTAATGTGGATTTTTTACGGGAGGAACTGGGATCTAAC
CTGTTTTATACCTAGCTAGCATTTG
Found at i:43928262 original size:6 final size:6
Alignment explanation
Indices: 43928229--43928261 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
43928219 TAATTTAGCC
*
43928229 TTTTTA TTTTCA TTTTCA TTTTCA TTTT-A TTTT
1 TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTTT
43928262 TTTGTTTACT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (6 bp):
TTTTCA
Found at i:43934208 original size:21 final size:21
Alignment explanation
Indices: 43934179--43934224 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
43934169 CACTCGCTCG
43934179 TGTGAGAGGGCGACACACCCA
1 TGTGAGAGGGCGACACACCCA
* * * *
43934200 TGTGGGAGGGTGACACGCCCG
1 TGTGAGAGGGCGACACACCCA
43934221 TGTG
1 TGTG
43934225 TCCTCTTAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.20, C:0.24, G:0.41, T:0.15
Consensus pattern (21 bp):
TGTGAGAGGGCGACACACCCA
Found at i:43935528 original size:48 final size:48
Alignment explanation
Indices: 43935407--43935688 Score: 289
Period size: 48 Copynumber: 5.9 Consensus size: 48
43935397 GGTAAGATGC
* * * *
43935407 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATC-AGTGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACAT-ATCAAG-GT
* * * * *
43935456 TGATACCATGTTCCAAACATGGTCTTACACTAGCCCACATGTCGAGGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAAGGT
* * * * *
43935504 CGATGCCATG-TCCTAGACATGGTCTTACACTAGTTCTCATATAAATGT
1 CGATGCCATGTTCC-AAACATGGTCTTACACTAGCTCACATATCAAGGT
* * * *
43935552 TGATGCCATGTTCCAAACATGGTCTTTCACTGGCTCACATATCAAGGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAAGGT
* * * * * *
43935600 CGATGCCATGTCCCAGACATGGTCTTACCCTAGCTCTCATATAAATGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAAGGT
* *
43935648 CGATGTCATGTTCCAAACATGGTCTTACACTGGCTCACATA
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATA
43935689 ACCCTAGTAT
Statistics
Matches: 187, Mismatches: 43, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
47 3 0.02
48 146 0.78
49 38 0.20
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAAGGT
Found at i:43935604 original size:96 final size:96
Alignment explanation
Indices: 43935405--43935688 Score: 424
Period size: 96 Copynumber: 2.9 Consensus size: 96
43935395 AGGGTAAGAT
* * * *
43935405 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATCAGTGTTGATACCATGTTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATAAATGTTGATGCCATGTTCC
* * * *
43935470 AAACATGGTCTTACACTAGCCCACATGTCGAG
65 AAACATGGTCTTACACTGGCTCACATATCAAG
* * *
43935502 GTCGATGCCATGTCCTAGACATGGTCTTACACTAGTTCTCATATAAATGTTGATGCCATGTTCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGTTGATGCCATGTTCCA
*
43935567 AACATGGTCTTTCACTGGCTCACATATCAAG
66 AACATGGTCTTACACTGGCTCACATATCAAG
* * *
43935598 GCCGATGCCATGTCCCAGACATGGTCTTACCCTAGCTCTCATATAAATGTCGATGTCATGTTCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGTTGATGCCATGTTCCA
43935663 AACATGGTCTTACACTGGCTCACATA
66 AACATGGTCTTACACTGGCTCACATA
43935689 ACCCTAGTAT
Statistics
Matches: 168, Mismatches: 19, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
96 130 0.77
97 38 0.23
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGTTGATGCCATGTTCCA
AACATGGTCTTACACTGGCTCACATATCAAG
Found at i:43935669 original size:144 final size:145
Alignment explanation
Indices: 43935408--43935678 Score: 341
Period size: 144 Copynumber: 1.9 Consensus size: 145
43935398 GTAAGATGCC
* * ** *
43935408 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATCAGTGTTGATACCATGTTCCAAA
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAATCAGTGCCGATACCATGTCCCAAA
* ** *
43935473 CATGGTCTTACACTAGCCCACATGTCGAGGTCGATGCCATGTCCTAGACATGGTCTTACACTAGT
66 CATGGTCTTACACTAGCCCACATATAAAGGTCGATGCCATGTCCTAAACATGGTCTTACACTAGT
43935538 TCTCATATAAATGTT
131 TCTCATATAAATGTT
* * * *
43935553 GATGCCATGTTCCAAACATGGTCTTTCACTGGCTCACAT-ATCAAG-GCCGATGCCATGTCCCAG
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAATC-AGTGCCGATACCATGTCCCAA
* * * * *
43935616 ACATGGTCTTACCCTAGCTCTCATATAAATGTCGATGTCATGTTCC-AAACATGGTCTTACACT
65 ACATGGTCTTACACTAGCCCACATATAAAGGTCGATGCCATG-TCCTAAACATGGTCTTACACT
43935679 GGCTCACATA
Statistics
Matches: 106, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
144 66 0.62
145 40 0.38
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (145 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAATCAGTGCCGATACCATGTCCCAAA
CATGGTCTTACACTAGCCCACATATAAAGGTCGATGCCATGTCCTAAACATGGTCTTACACTAGT
TCTCATATAAATGTT
Found at i:43937513 original size:48 final size:48
Alignment explanation
Indices: 43937449--43937666 Score: 276
Period size: 48 Copynumber: 4.5 Consensus size: 48
43937439 ACATGGCCTT
* * *
43937449 ACATATCGGTGTCGATGCCATGTTCCA-AGCATGGTCTTATACTAGCTC
1 ACATATCGATGCCGATGCCATGTTCCACA-CATGGTCTTACACTAGCTC
* * *
43937497 ACATATCGATGCCGATGCCATGTCCCATACAGGGTCTTACACTAGCTC
1 ACATATCGATGCCGATGCCATGTTCCACACATGGTCTTACACTAGCTC
* * *
43937545 ACATATCGAGGCCAATGCCATGTCCCACACATGGTCTTACACTAGCTC
1 ACATATCGATGCCGATGCCATGTTCCACACATGGTCTTACACTAGCTC
* * * * *
43937593 ACATATCGAGGCTGATGCCATGTCCCAGACATGTTCTTACACTAGCTC
1 ACATATCGATGCCGATGCCATGTTCCACACATGGTCTTACACTAGCTC
* *
43937641 TCATATCAATGCCGATGCCATGTTCC
1 ACATATCGATGCCGATGCCATGTTCC
43937667 TTTACACTGG
Statistics
Matches: 151, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
48 150 0.99
49 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
ACATATCGATGCCGATGCCATGTTCCACACATGGTCTTACACTAGCTC
Found at i:43945220 original size:48 final size:48
Alignment explanation
Indices: 43945095--43945571 Score: 436
Period size: 48 Copynumber: 9.9 Consensus size: 48
43945085 AGGGTAAGAT
* * * *
43945095 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATATATC-AG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTC--ACATATCGAG
* * * * *
43945144 TGTCAATGTCATGTTCCAAACATGGTCTTACACTAGCCCACATGTCGAG
1 -GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAG
* * * * ** *
43945193 GCTGATGCCATG-TCTAAGACATGGTCTTACACAAGCTCTCATATTAAT
1 GCCGATGCCATGTTCCAA-ACATGGTCTTACACTAGCTCACATATCGAG
* * * * *
43945241 GCCGATGCCATGTTCCAAATATGATCTTACACTGGCTCACATGTTGAG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAG
* * * * * *
43945289 GCTGATGCCATGTTCTAGACATGGTCTTACACTAGCTCTCATATCAAT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAG
* * * * *
43945337 GCCAATGTCATGTTCCAAACATGGTTTTATACTGGCTCACATATCGAG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAG
* * * * ** *
43945385 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATTAAT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAG
**
43945433 GCCGATGCCATGTTCTGAACATGGTCTTACACTAGCTCACATATCGAG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAG
* * * * * * * *
43945481 GCCAATGGCATGTCCCAAACATGGTTTTACACTGGCTCTCATATCAAT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAG
* * *
43945529 GCCAATGCCATGTTCCAAATATGGTCTTACACTGGCTCACATA
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATA
43945572 ACCCTAGTAT
Statistics
Matches: 335, Mismatches: 89, Indels: 8
0.78 0.21 0.02
Matches are distributed among these distances:
47 4 0.01
48 294 0.88
49 6 0.02
50 31 0.09
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (48 bp):
GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAG
Found at i:43945290 original size:96 final size:96
Alignment explanation
Indices: 43945098--43945571 Score: 608
Period size: 96 Copynumber: 4.9 Consensus size: 96
43945088 GTAAGATGCC
* * * * * *
43945098 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATATATCAGTGTCAATGTCATGTTCCAA
1 GATGCCATGTCCAAGACATGGTCTTACACTAGCTCTCATAT-T-AATGCCAATGCCATGTTCCAA
* * *
43945163 ACATGGTCTTACACTAGCCCACATGTCGAGGCT
64 ACATGGTCTTACACTGGCTCACATATCGAGGCT
* * * *
43945196 GATGCCATGTCTAAGACATGGTCTTACACAAGCTCTCATATTAATGCCGATGCCATGTTCCAAAT
1 GATGCCATGTCCAAGACATGGTCTTACACTAGCTCTCATATTAATGCCAATGCCATGTTCCAAAC
* * *
43945261 ATGATCTTACACTGGCTCACATGTTGAGGCT
66 ATGGTCTTACACTGGCTCACATATCGAGGCT
* * * *
43945292 GATGCCATGTTCTAGACATGGTCTTACACTAGCTCTCATATCAATGCCAATGTCATGTTCCAAAC
1 GATGCCATGTCCAAGACATGGTCTTACACTAGCTCTCATATTAATGCCAATGCCATGTTCCAAAC
* *
43945357 ATGGTTTTATACTGGCTCACATATCGAGGCT
66 ATGGTCTTACACTGGCTCACATATCGAGGCT
* * **
43945388 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATTAATGCCGATGCCATGTTCTGAAC
1 GATGCCATGTCCAAGACATGGTCTTACACTAGCTCTCATATTAATGCCAATGCCATGTTCCAAAC
* *
43945453 ATGGTCTTACACTAGCTCACATATCGAGGCC
66 ATGGTCTTACACTGGCTCACATATCGAGGCT
* * * * *
43945484 AATGGCATGTCCCAA-ACATGGTTTTACACTGGCTCTCATATCAATGCCAATGCCATGTTCCAAA
1 GATGCCATGT-CCAAGACATGGTCTTACACTAGCTCTCATATTAATGCCAATGCCATGTTCCAAA
*
43945548 TATGGTCTTACACTGGCTCACATA
65 CATGGTCTTACACTGGCTCACATA
43945572 ACCCTAGTAT
Statistics
Matches: 326, Mismatches: 49, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
96 286 0.88
97 4 0.01
98 36 0.11
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (96 bp):
GATGCCATGTCCAAGACATGGTCTTACACTAGCTCTCATATTAATGCCAATGCCATGTTCCAAAC
ATGGTCTTACACTGGCTCACATATCGAGGCT
Found at i:43945359 original size:144 final size:144
Alignment explanation
Indices: 43945093--43945571 Score: 530
Period size: 144 Copynumber: 3.3 Consensus size: 144
43945083 AAAGGGTAAG
* * * ** * * * *
43945093 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATATATCAGTGTCAATGTCATGT
1 ATGCCGATGCCATGTTCCAAATATGGTCTTACACTGGCTCACATAT-TAAG-GCCGATGCCATGT
* * * * ** * *
43945158 TCCAAACATGGTCTTACACTAGCCCACATGTCGAGGCTGATGCCATG-TCTAAGACATGGTCTTA
64 TCTAGACATGGTCTTACACTAGCTCACATATCGAGGCCAATGCCATGTTCCAA-ACATGGTTTTA
** *
43945222 CACAAGCTCTCATATTA
128 CACTGGCTCTCATATCA
* * * *
43945239 ATGCCGATGCCATGTTCCAAATATGATCTTACACTGGCTCACATGTTGAGGCTGATGCCATGTTC
1 ATGCCGATGCCATGTTCCAAATATGGTCTTACACTGGCTCACATATTAAGGCCGATGCCATGTTC
* * * * *
43945304 TAGACATGGTCTTACACTAGCTCTCATATCAATGCCAATGTCATGTTCCAAACATGGTTTTATAC
66 TAGACATGGTCTTACACTAGCTCACATATCGAGGCCAATGCCATGTTCCAAACATGGTTTTACAC
* *
43945369 TGGCTCACATATCG
131 TGGCTCTCATATCA
* * * * * * * *
43945383 AGGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATTAATGCCGATGCCATGTTC
1 ATGCCGATGCCATGTTCCAAATATGGTCTTACACTGGCTCACATATTAAGGCCGATGCCATGTTC
* *
43945448 T-GAACATGGTCTTACACTAGCTCACATATCGAGGCCAATGGCATGTCCCAAACATGGTTTTACA
66 TAG-ACATGGTCTTACACTAGCTCACATATCGAGGCCAATGCCATGTTCCAAACATGGTTTTACA
43945512 CTGGCTCTCATATCA
130 CTGGCTCTCATATCA
*
43945527 ATGCCAATGCCATGTTCCAAATATGGTCTTACACTGGCTCACATA
1 ATGCCGATGCCATGTTCCAAATATGGTCTTACACTGGCTCACATA
43945572 ACCCTAGTAT
Statistics
Matches: 273, Mismatches: 58, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
143 1 0.00
144 226 0.83
145 7 0.03
146 39 0.14
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (144 bp):
ATGCCGATGCCATGTTCCAAATATGGTCTTACACTGGCTCACATATTAAGGCCGATGCCATGTTC
TAGACATGGTCTTACACTAGCTCACATATCGAGGCCAATGCCATGTTCCAAACATGGTTTTACAC
TGGCTCTCATATCA
Found at i:43945427 original size:192 final size:192
Alignment explanation
Indices: 43945095--43945571 Score: 684
Period size: 192 Copynumber: 2.5 Consensus size: 192
43945085 AGGGTAAGAT
* * *
43945095 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATATATCAGTGTCAATGTCATGTTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-T-CATATCAATGCCAATGTCATGTTC
* * * *
43945160 CAAACATGGTCTTACACTAGCCCACATGTCGAGGCTGATGCCATGTCTAAGACATGGTCTTACAC
64 CAAACATGGTCTTACACTGGCTCACATATCGAGGCTGATGCCATGTCCAAGACATGGTCTTACAC
* * * *
43945225 AAGCTCTCATATTAATGCCGATGCCATGTTCCAAATATGATCTTACACTGGCTCACATGTTGAG
129 AAGCTCTCATATTAATGCCGATGCCATGTTCCAAACATGATCTTACACTAGCTCACATATCGAG
* * * *
43945289 GCTGATGCCATGTTCTAGACATGGTCTTACACTAGCTCTCATATCAATGCCAATGTCATGTTCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAATGCCAATGTCATGTTCCA
* * * *
43945354 AACATGGTTTTATACTGGCTCACATATCGAGGCTGATGCCATGTCCCAGACATGGTCTTACACTA
66 AACATGGTCTTACACTGGCTCACATATCGAGGCTGATGCCATGTCCAAGACATGGTCTTACACAA
** *
43945419 GCTCTCATATTAATGCCGATGCCATGTTCTGAACATGGTCTTACACTAGCTCACATATCGAG
131 GCTCTCATATTAATGCCGATGCCATGTTCCAAACATGATCTTACACTAGCTCACATATCGAG
* * * * *
43945481 GCCAATGGCATGTCCCAAACATGGTTTTACACTGGCTCTCATATCAATGCCAATGCCATGTTCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAATGCCAATGTCATGTTCCA
*
43945546 AATATGGTCTTACACTGGCTCACATA
66 AACATGGTCTTACACTGGCTCACATA
43945572 ACCCTAGTAT
Statistics
Matches: 249, Mismatches: 34, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
192 214 0.86
193 1 0.00
194 34 0.14
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (192 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAATGCCAATGTCATGTTCCA
AACATGGTCTTACACTGGCTCACATATCGAGGCTGATGCCATGTCCAAGACATGGTCTTACACAA
GCTCTCATATTAATGCCGATGCCATGTTCCAAACATGATCTTACACTAGCTCACATATCGAG
Found at i:43959812 original size:39 final size:39
Alignment explanation
Indices: 43959769--43959990 Score: 224
Period size: 39 Copynumber: 5.6 Consensus size: 39
43959759 GCTCCTCGTT
* *
43959769 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTA-ATCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATATCGCA
* * *
43959808 CAAATGCCTTCGGGACTTAACCCGGATTTAATA-ACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATA-TCGCA
*
43959848 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATATCGCA
*
43959887 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATATCGCA
* * *
43959926 CAAATGCCTTCGGATCTTAGTCC-GATATT-GTCACT-TAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-A-TATCGCA
43959966 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
43959991 CATCATTCAA
Statistics
Matches: 162, Mismatches: 12, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 119 0.73
40 42 0.26
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATATCGCA
Found at i:43959887 original size:79 final size:78
Alignment explanation
Indices: 43959769--43959990 Score: 256
Period size: 79 Copynumber: 2.8 Consensus size: 78
43959759 GCTCCTCGTT
* * * *
43959769 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
43959833 ATTTAATAACTCGCA
64 AATTAATAACTCGCA
43959848 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTA-CTCGCACAAATGCCTTCGGGACTTAGCCCGGA
* *
43959912 ATTAGTATCTCGCA
65 ATTAATAACTCGCA
* * *
43959926 CAAATGCCTTCGGATCTTAGTCC-GATATT-GTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCC
43959988 GGA
62 GGA
43959991 CATCATTCAA
Statistics
Matches: 126, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
78 62 0.49
79 64 0.51
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAATAACTCGCA
Found at i:43967777 original size:79 final size:78
Alignment explanation
Indices: 43967675--43967898 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
43967665 GCTCCTCGTT
* *
43967675 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
43967740 ATTTAATAACTCGCA
64 AATTAATAACTCGCA
* *
43967755 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
* *
43967819 ATTAGTATCTCGCA
65 ATTAATAACTCGCA
* * * * *
43967833 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
43967897 GA
63 GA
43967899 CATCATTCAA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
78 35 0.28
79 56 0.45
80 34 0.27
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAATAACTCGCA
Found at i:43967792 original size:39 final size:40
Alignment explanation
Indices: 43967675--43967898 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
43967665 GCTCCTCGTT
* *
43967675 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
43967715 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
43967755 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
43967794 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
43967833 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
43967874 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
43967899 CATCATTCAA
Statistics
Matches: 166, Mismatches: 12, Indels: 12
0.87 0.06 0.06
Matches are distributed among these distances:
38 2 0.01
39 71 0.43
40 77 0.46
41 16 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:43969921 original size:17 final size:17
Alignment explanation
Indices: 43969899--43969935 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
43969889 TTAAGAAACA
43969899 CTTATGATGCGATTGTG
1 CTTATGATGCGATTGTG
43969916 CTTATGATGCGATTGTG
1 CTTATGATGCGATTGTG
43969933 CTT
1 CTT
43969936 GTAAGTCATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.16, C:0.14, G:0.27, T:0.43
Consensus pattern (17 bp):
CTTATGATGCGATTGTG
Found at i:43972751 original size:19 final size:19
Alignment explanation
Indices: 43972638--43972762 Score: 65
Period size: 19 Copynumber: 6.3 Consensus size: 19
43972628 GATAAAAAAA
43972638 ATAAAAATCAATAAAAG-TT
1 ATAAAAATC-ATAAAAGATT
***
43972657 ATAAAAAAT-ATTAAATTTTT
1 AT-AAAAATCA-TAAAAGATT
*
43972677 ATTAAAAATTAGTAAAAAGAATT
1 A-TAAAAATCA-T-AAAAG-ATT
**
43972700 ATAAAAATCATAAAAGAAA
1 ATAAAAATCATAAAAGATT
** **
43972719 ATAAAAATTGTAAAATTTT
1 ATAAAAATCATAAAAGATT
*
43972738 ATAAAAATCATAAAAAATT
1 ATAAAAATCATAAAAGATT
*
43972757 ACAAAA
1 ATAAAA
43972763 TATAAAAAAA
Statistics
Matches: 79, Mismatches: 20, Indels: 14
0.70 0.18 0.12
Matches are distributed among these distances:
18 1 0.01
19 40 0.51
20 20 0.25
21 4 0.05
22 11 0.14
23 3 0.04
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.30
Consensus pattern (19 bp):
ATAAAAATCATAAAAGATT
Found at i:43972777 original size:38 final size:38
Alignment explanation
Indices: 43972679--43972780 Score: 100
Period size: 38 Copynumber: 2.6 Consensus size: 38
43972669 AAATTTTTAT
*
43972679 TAAAAATTAGTAAAAAGAATTATAAAAATCATAAAAGAAAA
1 TAAAAATTA--AAAAA-ATTTATAAAAATCATAAAAGAAAA
** * *
43972720 TAAAAATTGTAAAATTTTATAAAAATCAT-AAA-AAAT
1 TAAAAATTAAAAAAATTTATAAAAATCATAAAAGAAAA
43972756 TACAAAATATAAAAAAATTTATAAA
1 TA-AAAAT-TAAAAAAATTTATAAA
43972781 GTTGTAAGAA
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
36 5 0.10
37 8 0.16
38 26 0.51
39 4 0.08
41 8 0.16
ACGTcount: A:0.66, C:0.03, G:0.04, T:0.27
Consensus pattern (38 bp):
TAAAAATTAAAAAAATTTATAAAAATCATAAAAGAAAA
Found at i:43972800 original size:28 final size:28
Alignment explanation
Indices: 43972769--43972840 Score: 67
Period size: 28 Copynumber: 2.5 Consensus size: 28
43972759 AAAATATAAA
*
43972769 AAAATTTATAAAGTT-GTAAGAA-AATGAT
1 AAAA-TTATAAAATTCGTAA-AAGAATGAT
* *
43972797 AAAAATATAAAATTCGTAAAAGAATTAT
1 AAAATTATAAAATTCGTAAAAGAATGAT
43972825 AAAAATTATAGAAATT
1 -AAAATTATA-AAATT
43972841 ATCATATCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
27 10 0.28
28 13 0.36
29 8 0.22
30 5 0.14
ACGTcount: A:0.58, C:0.01, G:0.10, T:0.31
Consensus pattern (28 bp):
AAAATTATAAAATTCGTAAAAGAATGAT
Found at i:43972831 original size:9 final size:9
Alignment explanation
Indices: 43972696--43972842 Score: 59
Period size: 9 Copynumber: 15.7 Consensus size: 9
43972686 TAGTAAAAAG
43972696 AATTATAAA
1 AATTATAAA
*
43972705 AATCATAAA
1 AATTATAAA
**
43972714 AGAAAATAAA
1 A-ATTATAAA
*
43972724 AATTGTAAA
1 AATTATAAA
*
43972733 ATTTTATAAA
1 A-ATTATAAA
*
43972743 AATCATAAAA
1 AATTAT-AAA
*
43972753 AATTA-CAA
1 AATTATAAA
*
43972761 AATATAAAAA
1 AAT-TATAAA
43972771 AATT-TATAA
1 AATTATA-AA
* *
43972780 AGTTGTAAGAA
1 AATTAT-A-AA
*
43972791 AATGATAAA
1 AATTATAAA
43972800 AA-TAT-AA
1 AATTATAAA
*
43972807 AATTCGTAAAA
1 AATT-AT-AAA
43972818 GAATTATAAA
1 -AATTATAAA
*
43972828 AATTATAGA
1 AATTATAAA
43972837 AATTAT
1 AATTAT
43972843 CATATCAAAA
Statistics
Matches: 102, Mismatches: 23, Indels: 26
0.68 0.15 0.17
Matches are distributed among these distances:
7 4 0.04
8 9 0.09
9 45 0.44
10 31 0.30
11 9 0.09
12 4 0.04
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (9 bp):
AATTATAAA
Found at i:43977441 original size:190 final size:176
Alignment explanation
Indices: 43977091--43977447 Score: 480
Period size: 190 Copynumber: 1.9 Consensus size: 176
43977081 TTATTATTAT
* *
43977091 TTTTATATATTAAATAATTTATAAAAAAATAAAATATATAATATTGGAATGTAAATATAAAAAAA
1 TTTTATATATTAAATAATTTATAAAAAAATAAAATATATAATAGTGCAATGTAAATATAAAAAAA
* **
43977156 TGTGTTATCTATGGTTAAAATTTTCATAAAACAAAAGGCATATAAAAATTTTAAACATTAAATTA
66 TGCGTTATCTATGGTTAAAATTTTCATAAAACAAAAAACATATAAAAATTTTAAACATTAAATTA
* *
43977221 AAAATAATATACTTTTTTAAAGAATTTAAAAAGAATATATTTTTTA
131 AAAATAATATAATTTTTAAAAGAATTTAAAAAGAATATATTTTTTA
* *
43977267 TTTTATATATTATATAATTTATATAAAATTAAATTAAATATATAATAGTGCAATGTAGATATATA
1 TTTTATATATTAAATAA-TT-TATAAAA--AAATAAAATATATAATAGTGCAATGTA-A-ATATA
*
43977332 AAAAAATTGCGTTAAATTGTTTATGGTTAAAATTTTCATAAAACAAAAAACATATAAAAAAATTT
60 AAAAAA-TGCGTT--A---TCTATGGTTAAAATTTTCATAAAACAAAAAACATAT--AAAAATTT
* *
43977397 TAAACATTAAATTCAAAATAATATAATTTTTAAAAGAATTTAAAAATAATA
117 TAAACATTAAATTAAAAATAATATAATTTTTAAAAGAATTTAAAAAGAATA
43977448 ATATAGGTTG
Statistics
Matches: 155, Mismatches: 12, Indels: 14
0.86 0.07 0.08
Matches are distributed among these distances:
176 16 0.10
177 2 0.01
178 7 0.05
180 24 0.15
181 1 0.01
182 11 0.07
183 5 0.03
185 1 0.01
188 33 0.21
190 55 0.35
ACGTcount: A:0.52, C:0.04, G:0.06, T:0.38
Consensus pattern (176 bp):
TTTTATATATTAAATAATTTATAAAAAAATAAAATATATAATAGTGCAATGTAAATATAAAAAAA
TGCGTTATCTATGGTTAAAATTTTCATAAAACAAAAAACATATAAAAATTTTAAACATTAAATTA
AAAATAATATAATTTTTAAAAGAATTTAAAAAGAATATATTTTTTA
Found at i:43986478 original size:21 final size:21
Alignment explanation
Indices: 43986445--43986488 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
43986435 TGTTCTTTAC
*
43986445 TTCTCTTTGTTTTACGTTTCT
1 TTCTCTTTCTTTTACGTTTCT
* * *
43986466 TTCTTTTTCTTTTTCTTTTCT
1 TTCTCTTTCTTTTACGTTTCT
43986487 TT
1 TT
43986489 TGCTTGTTGA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.02, C:0.18, G:0.05, T:0.75
Consensus pattern (21 bp):
TTCTCTTTCTTTTACGTTTCT
Found at i:43988847 original size:15 final size:16
Alignment explanation
Indices: 43988823--43988855 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
43988813 GTTTTTAGTT
43988823 TTGCTCTCTCT-TTCC
1 TTGCTCTCTCTGTTCC
*
43988838 TTGCTTTCTCTGTTCC
1 TTGCTCTCTCTGTTCC
43988854 TT
1 TT
43988856 TTTTCTTAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.00, C:0.33, G:0.09, T:0.58
Consensus pattern (16 bp):
TTGCTCTCTCTGTTCC
Found at i:43997382 original size:21 final size:21
Alignment explanation
Indices: 43997358--43997424 Score: 79
Period size: 21 Copynumber: 3.3 Consensus size: 21
43997348 TCATTTTTAG
43997358 CAACTTCTCCTTCTTCAGCAA
1 CAACTTCTCCTTCTTCAGCAA
*
43997379 CAAC-T-TCC-TCTTCTGCAA
1 CAACTTCTCCTTCTTCAGCAA
*
43997397 CAACTTCAT-CTTCTACAGCAA
1 CAACTTC-TCCTTCTTCAGCAA
43997418 CAACTTC
1 CAACTTC
43997425 CTTCTCAACA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
18 13 0.33
19 4 0.10
20 2 0.05
21 20 0.51
ACGTcount: A:0.27, C:0.37, G:0.04, T:0.31
Consensus pattern (21 bp):
CAACTTCTCCTTCTTCAGCAA
Found at i:43997390 original size:18 final size:18
Alignment explanation
Indices: 43997369--43997426 Score: 71
Period size: 18 Copynumber: 3.1 Consensus size: 18
43997359 AACTTCTCCT
43997369 TCTTCAGCAACAACTTCC
1 TCTTCAGCAACAACTTCC
*
43997387 TCTTCTGCAACAACTTCATC
1 TCTTCAGCAACAACTTC--C
*
43997407 TTCTACAGCAACAACTTCC
1 -TCTTCAGCAACAACTTCC
43997426 T
1 T
43997427 TCTCAACAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
18 17 0.50
19 1 0.03
20 1 0.03
21 15 0.44
ACGTcount: A:0.28, C:0.36, G:0.05, T:0.31
Consensus pattern (18 bp):
TCTTCAGCAACAACTTCC
Found at i:44007071 original size:46 final size:46
Alignment explanation
Indices: 44007021--44007193 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
44007011 TGGTTGAGCA
44007021 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
44007067 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
44007112 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
44007160 -CCTGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
44007194 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 59 0.56
47 28 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:44007177 original size:93 final size:93
Alignment explanation
Indices: 44007018--44007188 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
44007008 GGATGGTTGA
*
44007018 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
44007083 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
44007111 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
*
44007175 TTGAGTCTGAGTTC
65 TTGAGTCCGAGTTC
44007189 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:44008997 original size:47 final size:47
Alignment explanation
Indices: 44008888--44008998 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
44008878 CCGGGATAAG
* *
44008888 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCAGAACTTTAACAGTATAGTA
* * *
44008935 CACAAAGTACTTCATCGGAACAAATCCAGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCAGAACTTTAACAGTA-TAGTA
44008982 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
44008999 ACTCAATGTT
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 1 0.02
47 52 0.95
48 2 0.04
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCAGAACTTTAACAGTATAGTA
Found at i:44017841 original size:40 final size:40
Alignment explanation
Indices: 44017786--44018052 Score: 471
Period size: 40 Copynumber: 6.7 Consensus size: 40
44017776 AACATTGGAT
44017786 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
44017826 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
44017866 TATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
44017906 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * *
44017946 TATATCCGGGCTATGACCCGAAGGCAATTATGCGGGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
44017986 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
44018026 TATGTCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
44018053 ATGTGTTTGC
Statistics
Matches: 215, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 215 1.00
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:44036219 original size:14 final size:14
Alignment explanation
Indices: 44036200--44036237 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
44036190 TACAGAACAT
44036200 GCATTCTATCCTCA
1 GCATTCTATCCTCA
*
44036214 GCATTCTATCCTTA
1 GCATTCTATCCTCA
44036228 GCATTC-ATCC
1 GCATTCTATCC
44036238 ATACATTTGC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 4 0.17
14 19 0.83
ACGTcount: A:0.21, C:0.34, G:0.08, T:0.37
Consensus pattern (14 bp):
GCATTCTATCCTCA
Found at i:44045030 original size:27 final size:27
Alignment explanation
Indices: 44045016--44045283 Score: 356
Period size: 27 Copynumber: 9.9 Consensus size: 27
44045006 AAAATGACCG
* ***
44045016 TTTTACACTCGATTTATAGAATTATTG
1 TTTTACCCTCGATTTATAGAATTACCA
*
44045043 TTTTATCCTCGATTTATAGAATTACCA
1 TTTTACCCTCGATTTATAGAATTACCA
*
44045070 TTTTACCCTCGATTTATAGAATTACCG
1 TTTTACCCTCGATTTATAGAATTACCA
*
44045097 TTTTACCCTCGATTTACAGAATTACCA
1 TTTTACCCTCGATTTATAGAATTACCA
*
44045124 TTTTACCCTCGATTTATAGAATTACCG
1 TTTTACCCTCGATTTATAGAATTACCA
*
44045151 TTTTACCCTCGATTTATAGAATTACTA
1 TTTTACCCTCGATTTATAGAATTACCA
*
44045178 TTTTACCCTTGATTTATAGAATTACCA
1 TTTTACCCTCGATTTATAGAATTACCA
* *
44045205 TTTTACCCTTGATTTATAAAATTACCA
1 TTTTACCCTCGATTTATAGAATTACCA
* * **
44045232 TTTTACCCTCTATTTACAGAATTACTG
1 TTTTACCCTCGATTTATAGAATTACCA
* * * *
44045259 TTTTACGCTCAATTTACAAAATTAC
1 TTTTACCCTCGATTTATAGAATTAC
44045284 TAAAATACCC
Statistics
Matches: 216, Mismatches: 25, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 216 1.00
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.43
Consensus pattern (27 bp):
TTTTACCCTCGATTTATAGAATTACCA
Found at i:44045301 original size:27 final size:27
Alignment explanation
Indices: 44045271--44045450 Score: 170
Period size: 27 Copynumber: 6.7 Consensus size: 27
44045261 TTACGCTCAA
* * * *
44045271 TTTACAAAATTACTAAAATACCCTTGG
1 TTTATAAAATTACCAAAATACCCCTAG
* *
44045298 TTTACAAAATTACCAAAATA-CCCTCG
1 TTTATAAAATTACCAAAATACCCCTAG
* *
44045324 ATCAGTAAAATTACCAAAATACCCCTAG
1 TTTA-TAAAATTACCAAAATACCCCTAG
* * *
44045352 TTTATAAAATTA-C-TAATACCCTTGG
1 TTTATAAAATTACCAAAATACCCCTAG
44045377 TTTATAAAATTACCAAAATACCCCTAG
1 TTTATAAAATTACCAAAATACCCCTAG
* *
44045404 CTTGTAAAATTACCAAAATACCCCT-G
1 TTTATAAAATTACCAAAATACCCCTAG
* * *
44045430 ATTTGTGAAATTATCAAAATA
1 -TTTATAAAATTACCAAAATA
44045451 TTCTCGATTT
Statistics
Matches: 128, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
25 21 0.16
26 9 0.07
27 91 0.71
28 7 0.05
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.31
Consensus pattern (27 bp):
TTTATAAAATTACCAAAATACCCCTAG
Found at i:44045392 original size:52 final size:52
Alignment explanation
Indices: 44045271--44045426 Score: 170
Period size: 52 Copynumber: 2.9 Consensus size: 52
44045261 TTACGCTCAA
* * * * *
44045271 TTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCG
1 TTTATAAAATTACCAAAATACCCCTAGTTTATAAAATTA-CAAAATACCCTCG
* * * *
44045324 ATCAGTAAAATTACCAAAATACCCCTAGTTTATAAAATTAC-TAATACCCTTGG
1 TTTA-TAAAATTACCAAAATACCCCTAGTTTATAAAATTACAAAATACCC-TCG
* *
44045377 TTTATAAAATTACCAAAATACCCCTAGCTTGTAAAATTACCAAAATACCC
1 TTTATAAAATTACCAAAATACCCCTAGTTTATAAAATTA-CAAAATACCC
44045427 CTGATTTGTG
Statistics
Matches: 85, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
52 40 0.47
53 8 0.09
54 37 0.44
ACGTcount: A:0.42, C:0.22, G:0.06, T:0.29
Consensus pattern (52 bp):
TTTATAAAATTACCAAAATACCCCTAGTTTATAAAATTACAAAATACCCTCG
Found at i:44045442 original size:79 final size:80
Alignment explanation
Indices: 44045271--44045428 Score: 239
Period size: 79 Copynumber: 2.0 Consensus size: 80
44045261 TTACGCTCAA
* *
44045271 TTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATT
1 TTTATAAAATTACT-AAATACCCTTGGTTTACAAAATTACCAAAATACCCTAGATCAGTAAAATT
44045336 ACCAAAATACCCCTAG
65 ACCAAAATACCCCTAG
* * *
44045352 TTTATAAAATTACT-AATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGCT-TGTAAAATT
1 TTTATAAAATTACTAAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTAGATCAGTAAAATT
44045415 ACCAAAATACCCCT
65 ACCAAAATACCCCT
44045429 GATTTGTGAA
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
79 52 0.73
80 6 0.08
81 13 0.18
ACGTcount: A:0.42, C:0.23, G:0.06, T:0.30
Consensus pattern (80 bp):
TTTATAAAATTACTAAATACCCTTGGTTTACAAAATTACCAAAATACCCTAGATCAGTAAAATTA
CCAAAATACCCCTAG
Found at i:44045508 original size:27 final size:27
Alignment explanation
Indices: 44045472--44045713 Score: 358
Period size: 27 Copynumber: 9.0 Consensus size: 27
44045462 TAAAATATCA
*
44045472 AAATACCCCTGTAGGGTAGAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACCG
44045499 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
44045526 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
44045553 AAATAACCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
**
44045580 AAATACCCCTGTAGGGTAGAATTATTG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
44045607 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
44045634 AAATACCCTTATAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
44045661 AAATACCCATATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
44045688 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
44045714 ATTTTGCCCC
Statistics
Matches: 198, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 198 1.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Done.