Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 135 of 333
Found at i:44045999 original size:24 final size:25
Alignment explanation
Indices: 44045917--44045986 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
44045907 AGGAAGTGCT
* * *
44045917 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
44045942 AAAAGGACTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
44045967 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
44045987 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:44048218 original size:26 final size:25
Alignment explanation
Indices: 44048189--44048245 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 25
44048179 CTATCTTAAC
* *
44048189 AAAGAAGAA-GAGAACATTTAGACTAG
1 AAAGAAGAACCAGAACATTGAG-C-AG
*
44048215 AAAGACGAACCAGAACATTGAGCAG
1 AAAGAAGAACCAGAACATTGAGCAG
44048240 AAAGAA
1 AAAGAA
44048246 AAATGATCCG
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 7 0.27
26 9 0.35
27 10 0.38
ACGTcount: A:0.54, C:0.12, G:0.23, T:0.11
Consensus pattern (25 bp):
AAAGAAGAACCAGAACATTGAGCAG
Found at i:44050198 original size:28 final size:28
Alignment explanation
Indices: 44050162--44050240 Score: 77
Period size: 28 Copynumber: 2.8 Consensus size: 28
44050152 TGGTATCCAC
* *
44050162 CACCAGTACATAGTACCTGGAAATATAT
1 CACCGGTACATAGTACCTGGAAATATAA
* * * * *
44050190 CACCGGTACAGAGTGCTTGGAATTGTAA
1 CACCGGTACATAGTACCTGGAAATATAA
* *
44050218 CATCGGTACATAATACCTGGAAA
1 CACCGGTACATAGTACCTGGAAA
44050241 CTGTAATAAT
Statistics
Matches: 38, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.24
Consensus pattern (28 bp):
CACCGGTACATAGTACCTGGAAATATAA
Found at i:44057433 original size:40 final size:40
Alignment explanation
Indices: 44057375--44057639 Score: 356
Period size: 40 Copynumber: 6.7 Consensus size: 40
44057365 GGATATAACC
* * * *
44057375 ACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGG-ATATGGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
* * * *
44057414 ACTAGCAGAAATGCCTTCGGGTCTTAGCCCGG-ATATAGCA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
44057454 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
44057494 ACTCGCACCAATGCCTTCAGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
44057534 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
44057574 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAATC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* * *
44057614 ACTAGCACAAATGTCTTCAGGACTTA
1 ACTCGCACAAATGCCTTCGGGACTTA
44057640 ACCCCGTTAG
Statistics
Matches: 205, Mismatches: 19, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
39 6 0.03
40 197 0.96
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:44065645 original size:40 final size:40
Alignment explanation
Indices: 44065587--44065851 Score: 347
Period size: 40 Copynumber: 6.7 Consensus size: 40
44065577 GGATATAACC
* * * *
44065587 ACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGG-ATATGGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
* * * *
44065626 ACTAGCATAAATGCCTTCGGGTCTTAGCCCGG-ATATAGCA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
44065666 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* * *
44065706 ACTCGTACCAATGCCTTTGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
44065746 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
44065786 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAATC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* **
44065826 ACTAGCACAAATATCTTCGGGACTTA
1 ACTCGCACAAATGCCTTCGGGACTTA
44065852 ACCCCGTTAG
Statistics
Matches: 203, Mismatches: 21, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
39 6 0.03
40 195 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:44067992 original size:53 final size:54
Alignment explanation
Indices: 44067935--44068142 Score: 217
Period size: 53 Copynumber: 3.9 Consensus size: 54
44067925 TTTCCTTTTT
* * * * *
44067935 GAACTTACCATTGCCATGTCTTTACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
* * * *
44067988 GAACTCACCAATGCAATGCCTTGGCATGGTCTTACATGGGA-CTTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATC-CTTGCCTTATA
* * *
44068042 GTGACTCATCAATGCCATGCCTTGACATTGTCTTACATGAGT-TCCTTGCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATG-GTATCCTTGCCTTATA
* * *
44068097 GAACTTATCAATGCCATGCCTT-AGCATGGTCTTACATGATATCCTT
1 GAACTCACCAATGCCATGCCTTGA-CATGGTCTTACATGGTATCCTT
44068143 ATCTTACCAA
Statistics
Matches: 128, Mismatches: 20, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
52 1 0.01
53 44 0.34
54 38 0.30
55 43 0.34
56 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
Found at i:44068075 original size:55 final size:54
Alignment explanation
Indices: 44067946--44068134 Score: 199
Period size: 55 Copynumber: 3.5 Consensus size: 54
44067936 AACTTACCAT
* * * * *
44067946 TGCCATGTCTTTACATGGTCTTACGTGGTA-TCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGG-ACTTCTTGCCTTATAGAACTCATCAA
* * *
44067999 TGCAATGCCTTGGCATGGTCTTACATGGGACTT-TTGCCTTATAGTGACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACAT-GGACTTCTTGCCTTATAG-AACTCATCAA
* * *
44068054 TGCCATGCCTTGACATTGTCTTACAT-GAGTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGACTT-CTTGCCTTATAGAACTCATCAA
44068108 TGCCATGCCTT-AGCATGGTCTTACATG
1 TGCCATGCCTTGA-CATGGTCTTACATG
44068135 ATATCCTTAT
Statistics
Matches: 113, Mismatches: 15, Indels: 14
0.80 0.11 0.10
Matches are distributed among these distances:
53 36 0.32
54 35 0.31
55 42 0.37
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGACTTCTTGCCTTATAGAACTCATCAA
Found at i:44069003 original size:30 final size:31
Alignment explanation
Indices: 44068958--44069015 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 31
44068948 CTAACTCAAA
44068958 CTTTAGCAAAATTACAATTTTGCCCCTAAAC
1 CTTTAGCAAAATTACAATTTTGCCCCTAAAC
*
44068989 CTTT-GCAGAATTACAATTTTGCCCCTA
1 CTTTAGCAAAATTACAATTTTGCCCCTA
44069016 GGCTTGGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.31, C:0.26, G:0.09, T:0.34
Consensus pattern (31 bp):
CTTTAGCAAAATTACAATTTTGCCCCTAAAC
Found at i:44074211 original size:43 final size:42
Alignment explanation
Indices: 44074163--44074269 Score: 128
Period size: 42 Copynumber: 2.5 Consensus size: 42
44074153 ATATCCCTGA
44074163 TATGGTCTTACAAGTGATCTCATATCGATGCCAATAGCCCAGT
1 TATGGTCTTACAAGTGATCTCATATCGATG-CAATAGCCCAGT
* * *
44074206 TATGGTCTTATACAA-AG-TCTCATATCGATGCGATATCCCAGT
1 TATGGTC-T-TACAAGTGATCTCATATCGATGCAATAGCCCAGT
* *
44074248 TATGGTCTTACATGTAATCTCA
1 TATGGTCTTACAAGTGATCTCA
44074270 GTAACCCTAA
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
40 4 0.07
41 1 0.02
42 22 0.41
43 20 0.37
44 2 0.04
45 5 0.09
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (42 bp):
TATGGTCTTACAAGTGATCTCATATCGATGCAATAGCCCAGT
Found at i:44074269 original size:42 final size:41
Alignment explanation
Indices: 44074148--44074269 Score: 127
Period size: 43 Copynumber: 2.9 Consensus size: 41
44074138 TACCATACCA
* * * *
44074148 ATGCCATATCCCTGATATGGTCTTACAAGTGATCTCATATCG
1 ATGCAATATCCCAGTTATGGTCTTAC-AGTAATCTCATATCG
* * **
44074190 ATGCCAATAGCCCAGTTATGGTCTTATACAAAGTCTCATATCG
1 ATG-CAATATCCCAGTTATGGTCTTACAGTAA-TCTCATATCG
*
44074233 ATGCGATATCCCAGTTATGGTCTTACATGTAATCTCA
1 ATGCAATATCCCAGTTATGGTCTTACA-GTAATCTCA
44074270 GTAACCCTAA
Statistics
Matches: 64, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
42 31 0.48
43 33 0.52
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (41 bp):
ATGCAATATCCCAGTTATGGTCTTACAGTAATCTCATATCG
Found at i:44076863 original size:25 final size:25
Alignment explanation
Indices: 44076831--44076881 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
44076821 AAAGGTATAG
44076831 TATGCCTGGTTTGTATGGAATACTA
1 TATGCCTGGTTTGTATGGAATACTA
44076856 TATGCCTGGTTTGTATGGAATACTA
1 TATGCCTGGTTTGTATGGAATACTA
44076881 T
1 T
44076882 CTTAGATTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.41
Consensus pattern (25 bp):
TATGCCTGGTTTGTATGGAATACTA
Found at i:44090092 original size:51 final size:51
Alignment explanation
Indices: 44090015--44090154 Score: 158
Period size: 51 Copynumber: 2.7 Consensus size: 51
44090005 CGGATGCCCG
* * * *
44090015 GTGGCCTGCGCATAGTACCACCCTTGT-AGTCAAAGCTACCTTCTT-CACAAT
1 GTGGCCTGCACATAGTACCACACTTGTGA-TCAAAGCTACATT-TTACACAAA
* *
44090066 GTGGCCTTCACATAGTACCACACTTGTGATCAAAGCTATATTTTACACAAA
1 GTGGCCTGCACATAGTACCACACTTGTGATCAAAGCTACATTTTACACAAA
* * * *
44090117 GTGGCCTGCACTTAGTACCACACGTGTGACCGAAGCTA
1 GTGGCCTGCACATAGTACCACACTTGTGATCAAAGCTA
44090155 TCGGGTATGC
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
50 2 0.03
51 73 0.96
52 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (51 bp):
GTGGCCTGCACATAGTACCACACTTGTGATCAAAGCTACATTTTACACAAA
Found at i:44090230 original size:50 final size:51
Alignment explanation
Indices: 44090164--44090294 Score: 165
Period size: 52 Copynumber: 2.6 Consensus size: 51
44090154 ATCGGGTATG
*
44090164 CATAGTAGCCTGCACTTAGTACTACACATACGACCT-AACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACATACGACCTAAACCATCTGAAACA
* *** * *
44090214 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACCATTTTAAACA
1 CATAGTAGCCTGCACTTAGTACTACACATACGACCT-AAACCATCTGAAACA
* *
44090266 CATAGTAGCCTGCACATAGTTCTACACAT
1 CATAGTAGCCTGCACTTAGTACTACACAT
44090295 GTGTTCTCAC
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
50 32 0.47
52 36 0.53
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (51 bp):
CATAGTAGCCTGCACTTAGTACTACACATACGACCTAAACCATCTGAAACA
Found at i:44091358 original size:39 final size:39
Alignment explanation
Indices: 44091277--44091446 Score: 295
Period size: 39 Copynumber: 4.3 Consensus size: 39
44091267 GCTCCTCGTT
* * *
44091277 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
*
44091317 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCACA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
44091356 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
44091395 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
44091434 CAAATGCCTTCGG
1 CAAATGCCTTCGG
44091447 ATCTTAGTCC
Statistics
Matches: 125, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 111 0.89
40 14 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:44105990 original size:44 final size:45
Alignment explanation
Indices: 44105904--44106525 Score: 192
Period size: 50 Copynumber: 12.5 Consensus size: 45
44105894 CTGGTACGCA
* * * *
44105904 TAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTG-G
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGAG
* * *
44105948 TAGTAGCCTGCACTTAATACTACACACGTGACTTAACCATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTG----A-G
* * * *
44105998 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAA-CGGGTAGG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA--CAATC-TG-A-G
* * * *
44106047 CATAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
1 --TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCT-G---A-G
* * *
44106099 TAGTAGCCTGCACTTAGTACAACACACGTGACTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTG----A-G
* * * * *
44106149 TAGTAGCTTGCACTTAGTACTACACACGTGATCAAAGTTAA-CGGGTACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA--CAATC-TG-A-G
* * *
44106198 CATAGTAGCCTGCACTTAGTACTACACACGTGACTTGACCATCTGATAGACG
1 --TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATC---T-GA-G
* * * * **
44106250 TAGTAGCCTACCCTTAGTACTACACACGTGATCAAAGTTAACAGGTACACA-
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C----CTAACA-AT-CTGAG
* ** *
44106301 TAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCT-G---A-G
* * ** *
44106351 TAGGAGCCTGTACTTAGTACTACACACGTGAATTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTG----A-G
* * * * * *
44106401 TAGTAGCCTACACTTAGTACTACACACATGATCGAAGTTAA-CGGGTACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA--CAATC-TG-A-G
* * *
44106450 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATTCTGTACATG
1 --TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA-TCTG---A-G
44106502 TAGTAGCCTGCACTTAGTACTACA
1 TAGTAGCCTGCACTTAGTACTACA
44106526 TAAGTGACTC
Statistics
Matches: 431, Mismatches: 99, Indels: 90
0.70 0.16 0.15
Matches are distributed among these distances:
44 37 0.09
45 1 0.00
46 4 0.01
48 1 0.00
49 15 0.03
50 231 0.54
51 121 0.28
52 13 0.03
53 2 0.00
55 4 0.01
56 1 0.00
57 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (45 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGAG
Found at i:44106091 original size:101 final size:100
Alignment explanation
Indices: 44105947--44106525 Score: 474
Period size: 101 Copynumber: 5.8 Consensus size: 100
44105937 TATCAATCTG
* * * * * *
44105947 GTAGTAGCCTGCACTTAATACTACACACGTGACTTAACCATCTGATACATGTAGTAGCCTGCACT
1 GTAGTAGCCTGCACTTAGTACTACACACGTGACATATCAATCTGGTACACGTAGTAGCCTGCACT
* **
44106012 TAGTACTACACACGTGATCAAAGTTAACGGGTAGGC
66 TAGTACTACACACGTGA-CAAAGTTAACTGGTACAC
* * * * *
44106048 ATAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACT
1 GTAGTAGCCTGCACTTAGTACTACACACGTGACATATCAATCTGGTACACGTAGTAGCCTGCACT
* * ** * *
44106113 TAGTACAACACACGTGACTTAA-CCATCTGATACAC
66 TAGTACTACACACGTGAC-AAAGTTAACTGGTACAC
* * * * * *
44106148 GTAGTAGCTTGCACTTAGTACTACACACGTGATCAAAGTTAA-CGGGTACGCATAGTAGCCTGCA
1 GTAGTAGCCTGCACTTAGTACTACACACGTGA-CATA-TCAATCTGGTACACGTAGTAGCCTGCA
** ** * * *
44106212 CTTAGTACTACACACGTGAC-TTGACCATCTGATAGAC
64 CTTAGTACTACACACGTGACAAAG-TTAACTGGTACAC
* * * * * *
44106249 GTAGTAGCCTACCCTTAGTACTACACACGTGATCAAAGTTAA-CAGGTACACATAGTAGCCTGCA
1 GTAGTAGCCTGCACTTAGTACTACACACGTGA-CATA-TCAATCTGGTACACGTAGTAGCCTGCA
**
44106313 CTTAGTACTACACA--TG-CAACCTATCAATCTGGTACAC
64 CTTAGTACTACACACGTGACAAAGT-T-AA-CTGGTACAC
* * * * * *
44106350 GTAGGAGCCTGTACTTAGTACTACACACGTGA-ATTAACCATCTGATACACGTAGTAGCCTACAC
1 GTAGTAGCCTGCACTTAGTACTACACACGTGACA-TATCAATCTGGTACACGTAGTAGCCTGCAC
* * * *
44106414 TTAGTACTACACACATGATCGAAGTTAACGGGTACGC
65 TTAGTACTACACACGTGA-CAAAGTTAACTGGTACAC
* * * * *
44106451 ATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATTCT-GTACATGTAGTAGCCTGCAC
1 GTAGTAGCCTGCACTTAGTACTACACACGTGACATATCAA-TCTGGTACACGTAGTAGCCTGCAC
44106515 TTAGTACTACA
65 TTAGTACTACA
44106526 TAAGTGACTC
Statistics
Matches: 388, Mismatches: 73, Indels: 34
0.78 0.15 0.07
Matches are distributed among these distances:
98 1 0.00
99 4 0.01
100 70 0.18
101 299 0.77
102 10 0.03
103 1 0.00
104 3 0.01
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (100 bp):
GTAGTAGCCTGCACTTAGTACTACACACGTGACATATCAATCTGGTACACGTAGTAGCCTGCACT
TAGTACTACACACGTGACAAAGTTAACTGGTACAC
Found at i:44106169 original size:151 final size:150
Alignment explanation
Indices: 44105896--44106427 Score: 582
Period size: 151 Copynumber: 3.6 Consensus size: 150
44105886 GAAGCTCTCT
*
44105896 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCT-G----GTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTAACGTAGTAGCC
* *
44105956 TGCACTTAATACTACACACGTGACTTAACCATCTGATACATGTAGTAGCCTGCACTTAGTACTAC
66 TGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTAC
44106021 ACACGTGATCAAAGTTAACG
131 ACACGTGATCAAAGTTAACG
* *
44106041 GGTAGGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTA-ACGTAGTAGC
* *
44106106 CTGCACTTAGTACAACACACGTGACTTAACCATCTGATACACGTAGTAGCTTGCACTTAGTACTA
65 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
44106171 CACACGTGATCAAAGTTAACG
130 CACACGTGATCAAAGTTAACG
* * * * *
44106192 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACTTGA-CCATCTGATAGACGTAGTAG
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT-ATCAATCTGGTA-ACGTAGTAG
* * * ** * * * *
44106256 CCTACCCTTAGTACTACACACGTGA-TCAAAGTTAACAGGTACACATAGTAGCCTGCACTTAGTA
64 CCTGCACTTAGTACTACACACGTGACT-TAA-CCATCTGATACACGTAGTAGCCTGCACTTAGTA
** *
44106320 CTACACA--TG--CAACCTATCAATCT
127 CTACACACGTGATCAAAGT-T-AA-CG
* * * * * * ** * * *
44106343 GGTACACGTAGGAGCCTGTACTTAGTACTACACACGTGAATTAACCATCTGATACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTA-ACGTAGTAGC
*
44106408 CTACACTTAGTACTACACAC
65 CTGCACTTAGTACTACACAC
44106428 ATGATCGAAG
Statistics
Matches: 338, Mismatches: 36, Indels: 20
0.86 0.09 0.05
Matches are distributed among these distances:
145 47 0.14
146 1 0.00
148 4 0.01
149 1 0.00
150 6 0.02
151 245 0.72
152 34 0.10
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (150 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTAACGTAGTAGCC
TGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTAC
ACACGTGATCAAAGTTAACG
Found at i:44106255 original size:252 final size:251
Alignment explanation
Indices: 44105948--44106525 Score: 915
Period size: 252 Copynumber: 2.3 Consensus size: 251
44105938 ATCAATCTGG
*
44105948 TAGTAGCCTGCACTTAATACTACACACGTGACTTAACCATCTGATACATGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTT-ACCATCTGATACATGTAGTAGCCTGCACTT
* ** *
44106013 AGTACTACACACGTGATCAAAGTTAACGGGTAGGCATAGTAGCTTGCACTTAGTACTACACATGC
65 AGTACTACACACGTGATCAAAGTTAACAGGTACACATAGTAGCCTGCACTTAGTACTACACATGC
* * *
44106078 GACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTACAACACACGTGACTTAACCATCTGA
130 AACCTATCAATCTGGTACACGTAGGAGCCTGCACTTAGTACAACACACGTGAATTAACCATCTGA
* * *
44106143 TACACGTAGTAGCTTGCACTTAGTACTACACACGTGATCAAAGTTAACGGGTACGCA
195 TACACGTAGTAGCCTACACTTAGTACTACACACATGATCAAAGTTAACGGGTACGCA
* * * *
44106200 TAGTAGCCTGCACTTAGTACTACACACGTGACTTGACCATCTGATAGACGTAGTAGCCTACCCTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTT-ACCATCTGATACATGTAGTAGCCTGCACTT
44106265 AGTACTACACACGTGATCAAAGTTAACAGGTACACATAGTAGCCTGCACTTAGTACTACACATGC
65 AGTACTACACACGTGATCAAAGTTAACAGGTACACATAGTAGCCTGCACTTAGTACTACACATGC
* *
44106330 AACCTATCAATCTGGTACACGTAGGAGCCTGTACTTAGTACTACACACGTGAATTAACCATCTGA
130 AACCTATCAATCTGGTACACGTAGGAGCCTGCACTTAGTACAACACACGTGAATTAACCATCTGA
*
44106395 TACACGTAGTAGCCTACACTTAGTACTACACACATGATCGAAGTTAACGGGTACGCA
195 TACACGTAGTAGCCTACACTTAGTACTACACACATGATCAAAGTTAACGGGTACGCA
* * * *
44106452 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATTCTG-TACATGTAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTA-CCA-TCTGATACATGTAGTAGCCTGCACT
44106516 TAGTACTACA
64 TAGTACTACA
44106526 TAAGTGACTC
Statistics
Matches: 297, Mismatches: 27, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
251 1 0.00
252 292 0.98
253 4 0.01
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (251 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACTTACCATCTGATACATGTAGTAGCCTGCACTTA
GTACTACACACGTGATCAAAGTTAACAGGTACACATAGTAGCCTGCACTTAGTACTACACATGCA
ACCTATCAATCTGGTACACGTAGGAGCCTGCACTTAGTACAACACACGTGAATTAACCATCTGAT
ACACGTAGTAGCCTACACTTAGTACTACACACATGATCAAAGTTAACGGGTACGCA
Found at i:44106433 original size:151 final size:151
Alignment explanation
Indices: 44106204--44106525 Score: 520
Period size: 151 Copynumber: 2.1 Consensus size: 151
44106194 TACGCATAGT
* * * *
44106204 AGCCTGCACTTAGTACTACACACGTGACTTGACCATCTGATAGACGTAGTAGCCTACCCTTAGTA
1 AGCCTGCACTTAGTACTACACACGTGAATTAACCATCTGATACACGTAGTAGCCTACACTTAGTA
*
44106269 CTACACACGTGATCAAAGTTAACAGGTACACATAGTAGCCTGCACTTAGTACTACACATGCAACC
66 CTACACACATGATCAAAGTTAACAGGTACACATAGTAGCCTGCACTTAGTACTACACATGCAACC
44106334 TATCAA-TCTGGTACACGTAGG
131 TATCAATTCT-GTACACGTAGG
*
44106355 AGCCTGTACTTAGTACTACACACGTGAATTAACCATCTGATACACGTAGTAGCCTACACTTAGTA
1 AGCCTGCACTTAGTACTACACACGTGAATTAACCATCTGATACACGTAGTAGCCTACACTTAGTA
* * * *
44106420 CTACACACATGATCGAAGTTAACGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
66 CTACACACATGATCAAAGTTAACAGGTACACATAGTAGCCTGCACTTAGTACTACACATGCAACC
* *
44106485 TATCAATTCTGTACATGTAGT
131 TATCAATTCTGTACACGTAGG
44106506 AGCCTGCACTTAGTACTACA
1 AGCCTGCACTTAGTACTACA
44106526 TAAGTGACTC
Statistics
Matches: 157, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
151 154 0.98
152 3 0.02
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (151 bp):
AGCCTGCACTTAGTACTACACACGTGAATTAACCATCTGATACACGTAGTAGCCTACACTTAGTA
CTACACACATGATCAAAGTTAACAGGTACACATAGTAGCCTGCACTTAGTACTACACATGCAACC
TATCAATTCTGTACACGTAGG
Found at i:44107186 original size:30 final size:30
Alignment explanation
Indices: 44107150--44107206 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
44107140 AAAATCATAG
*
44107150 TTTCACAAATTTACATTTTGACCCCTAAAC
1 TTTCACAAATTTACACTTTGACCCCTAAAC
* *
44107180 TTTCACATATTTACACTTTGGCCCCTA
1 TTTCACAAATTTACACTTTGACCCCTA
44107207 GGCTCGTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.05, T:0.39
Consensus pattern (30 bp):
TTTCACAAATTTACACTTTGACCCCTAAAC
Found at i:44109135 original size:46 final size:46
Alignment explanation
Indices: 44109079--44109251 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
44109069 TGGTTGAGCA
* *
44109079 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
44109125 TCTGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * ** *
44109172 TCCGAACTCGTTAAGTTGAGTCTAAGTTCATTTATGGATGCAAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
44109218 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
44109252 GGGGCGGGTT
Statistics
Matches: 97, Mismatches: 23, Indels: 14
0.72 0.17 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 55 0.57
47 24 0.25
48 3 0.03
50 6 0.06
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.31
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:44109235 original size:93 final size:93
Alignment explanation
Indices: 44109076--44109246 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
44109066 GGATGGTTGA
* * * * * *
44109076 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAGCTCGTTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAGCTCATTGAGT
44109141 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
44109169 GCATCCGAACTCGTTAAGTTGAGTCTAAGTTCATTTATGGATGCAAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAGCTCATTGAGT
44109234 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
44109247 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTAAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAGCTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:44117235 original size:48 final size:48
Alignment explanation
Indices: 44117164--44117483 Score: 430
Period size: 48 Copynumber: 6.7 Consensus size: 48
44117154 AGTACCAATT
* * *
44117164 CCATGTCCCCGACATCGTCTTACA-T-GAATCCACATATCATCGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGGCA--CACATATCATCGCCGATG
* *
44117212 CCATGTCCTAGACATGGTCTTACACTGGCACACATATCATCGTCGATG
1 CCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATG
* * * *
44117260 CCATGTCCCA-AGCATGGTCTTACACAGGAACATATATCATCGCTGATG
1 CCATGTCCCAGA-CATGGTCTTACACTGGCACACATATCATCGCCGATG
* *
44117308 CCATGTCCCAAACATGGTCTTACACTGGCACACATATCATCACCGATG
1 CCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATG
* * * * *
44117356 CCATGTCCTAGACATCGTCTTACACAGGAACATATATCATCGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATG
44117404 CCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATG
* *
44117452 CCATGTCCTAGACATGGTCTTACACAGGCACA
1 CCATGTCCCAGACATGGTCTTACACTGGCACA
44117484 TTTAGCATGG
Statistics
Matches: 238, Mismatches: 30, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
47 1 0.00
48 233 0.98
49 2 0.01
50 2 0.01
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.24
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATG
Found at i:44117328 original size:96 final size:96
Alignment explanation
Indices: 44117197--44117484 Score: 488
Period size: 96 Copynumber: 3.0 Consensus size: 96
44117187 ATGAATCCAC
* *
44117197 ATATCATCGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATCATCGTCGATGCC
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATGCC
*
44117262 ATGTCCCA-AGCATGGTCTTACACAGGAACAT
66 ATGTCCTAGA-CATGGTCTTACACAGGAACAT
* * *
44117293 ATATCATCGCTGATGCCATGTCCCAAACATGGTCTTACACTGGCACACATATCATCACCGATGCC
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATGCC
*
44117358 ATGTCCTAGACATCGTCTTACACAGGAACAT
66 ATGTCCTAGACATGGTCTTACACAGGAACAT
44117389 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATGCC
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATGCC
*
44117454 ATGTCCTAGACATGGTCTTACACAGGCACAT
66 ATGTCCTAGACATGGTCTTACACAGGAACAT
44117485 TTAGCATGGT
Statistics
Matches: 179, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
96 178 0.99
97 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (96 bp):
ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATGCC
ATGTCCTAGACATGGTCTTACACAGGAACAT
Found at i:44122985 original size:21 final size:22
Alignment explanation
Indices: 44122959--44123000 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
44122949 GTGTATTTTG
44122959 ATGTTTGATGATAGA-AAACAC
1 ATGTTTGATGATAGATAAACAC
* *
44122980 ATGTTTGTTGCTAGATAAACA
1 ATGTTTGATGATAGATAAACA
44123001 ACATTTGTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (22 bp):
ATGTTTGATGATAGATAAACAC
Found at i:44135429 original size:300 final size:300
Alignment explanation
Indices: 44134887--44135493 Score: 1106
Period size: 300 Copynumber: 2.0 Consensus size: 300
44134877 ATTTTATTAT
* *
44134887 TATTTTAATGTCTACAGCATGATAGTATGATTGTGTGAAATTTTTGTTAAGAAATTTTATCGTTT
1 TATTTTAATGTCTACAGCATGATAGTATGATTGTGTGAAATTTTCGATAAGAAATTTTATCGTTT
* *
44134952 GAATACTTAATTTGAGAAAAAAGACTAAATCACGTAAAGTGCAAAAGTGATGTTCTAATAGCTAA
66 GAATACTTAATTTGAGAAAAAAGACTAAATCACGTAAAGTACAAAAATGATGTTCTAATAGCTAA
* * *
44135017 AGGCATTAAATGGCTATGAAATTAAATAGTGGAGGTTCTTATCTGGTAAATATACCATTGTTAAT
131 AGGCATTAAATGGCTATGAAATTAAATAGTGAAGGTCCTTATCTAGTAAATATACCATTGTTAAT
44135082 ATGAATGGACATTTATGGACTTATATTAAGTGATTCTAATGAATTTTATTAAAGGTTATAATAGT
196 ATGAATGGACATTTATGGACTTATATTAAGTGATTCTAATGAATTTTATTAAAGGTTATAATAGT
44135147 AATTAATAAATAAAAATTTAATAAGTTTAATAAAACCAAA
261 AATTAATAAATAAAAATTTAATAAGTTTAATAAAACCAAA
44135187 TATTTTAATGTCTACAGCATGATAGTATGATTGTGTGAAATTTTCGATAAGAAATTTTATCGTTT
1 TATTTTAATGTCTACAGCATGATAGTATGATTGTGTGAAATTTTCGATAAGAAATTTTATCGTTT
* *
44135252 GAATACTTAATTTGATAAAAAGGACTAAATCACGTAAAGTACAAAAATGATGTTCTAATAGCTAA
66 GAATACTTAATTTGAGAAAAAAGACTAAATCACGTAAAGTACAAAAATGATGTTCTAATAGCTAA
* *
44135317 AGGCATTAAATGGCTATGAAATTAAATAGTGAAGGTCCTTGTCTAGTAAATATATCATTGTTAAT
131 AGGCATTAAATGGCTATGAAATTAAATAGTGAAGGTCCTTATCTAGTAAATATACCATTGTTAAT
*
44135382 ATGAGTGGACATTTATGGACTTATATTAAGTGATTCTAATGAATTTTATTAAAGGTTATAATAGT
196 ATGAATGGACATTTATGGACTTATATTAAGTGATTCTAATGAATTTTATTAAAGGTTATAATAGT
44135447 AATTAATAAATAAAAATTTAATAAGTTTAATAAAACCAAA
261 AATTAATAAATAAAAATTTAATAAGTTTAATAAAACCAAA
44135487 TATTTTA
1 TATTTTA
44135494 GTCCATTTTC
Statistics
Matches: 295, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
300 295 1.00
ACGTcount: A:0.41, C:0.07, G:0.15, T:0.37
Consensus pattern (300 bp):
TATTTTAATGTCTACAGCATGATAGTATGATTGTGTGAAATTTTCGATAAGAAATTTTATCGTTT
GAATACTTAATTTGAGAAAAAAGACTAAATCACGTAAAGTACAAAAATGATGTTCTAATAGCTAA
AGGCATTAAATGGCTATGAAATTAAATAGTGAAGGTCCTTATCTAGTAAATATACCATTGTTAAT
ATGAATGGACATTTATGGACTTATATTAAGTGATTCTAATGAATTTTATTAAAGGTTATAATAGT
AATTAATAAATAAAAATTTAATAAGTTTAATAAAACCAAA
Found at i:44140328 original size:13 final size:13
Alignment explanation
Indices: 44140310--44140340 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
44140300 CATTTCCAGC
44140310 TTACCTTAGGATA
1 TTACCTTAGGATA
*
44140323 TTACCTTAGGTTA
1 TTACCTTAGGATA
44140336 TTACC
1 TTACC
44140341 ATGTAATGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.26, C:0.19, G:0.13, T:0.42
Consensus pattern (13 bp):
TTACCTTAGGATA
Found at i:44143939 original size:25 final size:25
Alignment explanation
Indices: 44143911--44143965 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
44143901 ATTAGACATC
*
44143911 AAAATACACAAATATCTATCATGAA
1 AAAAAACACAAATATCTATCATGAA
*** *
44143936 AAAAAATTTAAATATCTATCATTAA
1 AAAAAACACAAATATCTATCATGAA
44143961 AAAAA
1 AAAAA
44143966 TTTAGACTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.60, C:0.11, G:0.02, T:0.27
Consensus pattern (25 bp):
AAAAAACACAAATATCTATCATGAA
Found at i:44143967 original size:24 final size:25
Alignment explanation
Indices: 44143920--44143969 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
44143910 CAAAATACAC
44143920 AAATATCTATCATGAAAAAAAATTT
1 AAATATCTATCATGAAAAAAAATTT
*
44143945 AAATATCTATCAT-TAAAAAAATTT
1 AAATATCTATCATGAAAAAAAATTT
44143969 A
1 A
44143970 GACTTTGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 11 0.46
25 13 0.54
ACGTcount: A:0.56, C:0.08, G:0.02, T:0.34
Consensus pattern (25 bp):
AAATATCTATCATGAAAAAAAATTT
Found at i:44152773 original size:40 final size:40
Alignment explanation
Indices: 44152689--44152953 Score: 310
Period size: 40 Copynumber: 6.7 Consensus size: 40
44152679 TTGAATGATG
* * * *
44152689 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
** *
44152729 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* *
44152769 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
*
44152808 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAA
*
44152848 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
44152888 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTA-AA
* *
44152929 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
44152954 AACGAGGAGC
Statistics
Matches: 200, Mismatches: 16, Indels: 18
0.85 0.07 0.08
Matches are distributed among these distances:
39 34 0.17
40 153 0.76
41 12 0.06
42 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:44152889 original size:80 final size:80
Alignment explanation
Indices: 44152689--44152953 Score: 369
Period size: 80 Copynumber: 3.3 Consensus size: 80
44152679 TTGAATGATG
* * * * **
44152689 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
*
44152752 TTGTGCGAGA-TACTAAT
64 TTGTGCGA-ATTACTAAA
*
44152769 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
44152833 GTGCGAATTACTAAA
66 GTGCGAATTACTAAA
*
44152848 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
44152913 GTGCGAATTACTATAA
66 GTGCGAATTACTA-AA
*
44152929 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
44152954 AACGAGGAGC
Statistics
Matches: 168, Mismatches: 12, Indels: 10
0.88 0.06 0.05
Matches are distributed among these distances:
78 2 0.01
79 58 0.35
80 106 0.63
81 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
GTGCGAATTACTAAA
Found at i:44152971 original size:120 final size:118
Alignment explanation
Indices: 44152689--44152986 Score: 325
Period size: 119 Copynumber: 2.5 Consensus size: 118
44152679 TTGAATGATG
** * * * *
44152689 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAAG-GACTAAATCCGG-TTAA-ATCCCGAAGGCAT
* *
44152752 TTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
63 TTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
* * ** ** *
44152808 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAAGGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* *
44152873 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA-AA
* * *
44152929 -CCGGGCTATGTCCCGAAGGCATTTGAACG-AGGAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAAGGA-CTAAATCCGGTTAAATCCCGAAGG
44152987 TACGTGATTT
Statistics
Matches: 150, Mismatches: 23, Indels: 12
0.81 0.12 0.06
Matches are distributed among these distances:
118 1 0.01
119 80 0.53
120 67 0.45
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAAGGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:44152984 original size:159 final size:159
Alignment explanation
Indices: 44152689--44152986 Score: 356
Period size: 159 Copynumber: 1.9 Consensus size: 159
44152679 TTGAATGATG
*
44152689 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** * * *
44152754 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCTGGGTTAAG
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCTCGGTTAAA
44152819 TCCCGAAGGCATTTGTGCGAATTACTAAA
131 TCCCGAAGGCATTTGTGCGAATTACTAAA
* * * * **
44152848 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* *
44152911 TTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATC-CG
64 TTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCTCG
*
44152972 GTTAAATTCCGAAGG
125 GTTAAATCCCGAAGG
44152987 TACGTGATTT
Statistics
Matches: 117, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
158 4 0.03
159 82 0.70
160 31 0.26
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (159 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCTCGGTTAAA
TCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:44158823 original size:28 final size:27
Alignment explanation
Indices: 44158766--44158917 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
44158756 TAAATTGTGC
*
44158766 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
44158793 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
44158821 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
44158848 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
44158876 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
44158903 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
44158918 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:44158831 original size:55 final size:55
Alignment explanation
Indices: 44158766--44158917 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
44158756 TAAATTGTGC
*
44158766 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
44158821 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
44158876 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
44158918 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:44163963 original size:39 final size:40
Alignment explanation
Indices: 44163862--44164125 Score: 301
Period size: 40 Copynumber: 6.7 Consensus size: 40
44163852 TTGAATGATG
* * *
44163862 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
* * *
44163902 TCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
44163942 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
*
44163981 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGA-ATTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAA
* *
44164020 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
44164060 TCCGGGTTAAGTCCCGAAGGCATTTGTACGA-ATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTA-AA
*
44164101 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
44164126 AACGAGGAGC
Statistics
Matches: 197, Mismatches: 17, Indels: 20
0.84 0.07 0.09
Matches are distributed among these distances:
39 71 0.36
40 114 0.58
41 11 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:44164053 original size:79 final size:79
Alignment explanation
Indices: 44163862--44164125 Score: 356
Period size: 79 Copynumber: 3.3 Consensus size: 79
44163852 TTGAATGATG
* * * * **
44163862 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCGAAGGCATT
* *
44163926 TGTGTGAGA-TACTAAT
64 TGTGCGA-ATTACTAAA
44163942 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTG
44164006 TGCGAATTACTAAA
66 TGCGAATTACTAAA
*
44164020 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGT-CCGAAGGCATTT
*
44164085 GTACGAATTACTATAA
65 GTGCGAATTACTA-AA
*
44164101 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
44164126 AACGAGGAGC
Statistics
Matches: 167, Mismatches: 12, Indels: 10
0.88 0.06 0.05
Matches are distributed among these distances:
77 1 0.01
78 34 0.20
79 65 0.39
80 65 0.39
81 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTG
TGCGAATTACTAAA
Found at i:44164139 original size:40 final size:39
Alignment explanation
Indices: 44163863--44164158 Score: 205
Period size: 40 Copynumber: 7.5 Consensus size: 39
44163853 TGAATGATGT
* * * * *
44163863 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTAC-GAGT-ACTATAA
** ** *
44163903 CCGGACTAAGAT-CCGAAGGCATTTGTGTGAGATACTA-ATT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTACGAG-TACTATA-A
* *
44163943 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGTTAAGTCCCGAAGGCATTTGTACGAG-TACTATAA
* *
44163981 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAATTACTA-AA
1 -CCGGGTTAAGTCCCGAAGGCATTTGTACG-AGTACTATAA
*
44164020 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
1 -CCGGGTTAAGTCCCGAAGGCATTTGTACGAG-TACTATAA
*
44164060 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAATTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTTGTACG-AGTACTATAA
* * * * *
44164101 CCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTACGAGTA-CTATAA
* *
44164141 CC-GGTTAAATTCCGAAGG
1 CCGGGTTAAGTCCCGAAGG
44164159 TACGTGATTT
Statistics
Matches: 220, Mismatches: 23, Indels: 27
0.81 0.09 0.10
Matches are distributed among these distances:
39 85 0.39
40 124 0.56
41 11 0.05
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTACGAGTACTATAA
Found at i:44168893 original size:31 final size:31
Alignment explanation
Indices: 44168852--44168953 Score: 118
Period size: 31 Copynumber: 3.3 Consensus size: 31
44168842 ACACCGGTAA
*
44168852 ATAGTACCTGATAAAATATAAACACC-GACAC
1 ATAGTGCCTGATAAAATATAAACACCAG-CAC
* * * *
44168883 ATTGTGCCTGATACAATATAAACATCAGTAC
1 ATAGTGCCTGATAAAATATAAACACCAGCAC
*
44168914 ATAGTACCTGCA-AAAATATAAACACCAGCAC
1 ATAGTGCCTG-ATAAAATATAAACACCAGCAC
44168945 ATAGTGCCT
1 ATAGTGCCT
44168954 ACTATACCTA
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
31 56 0.97
32 2 0.03
ACGTcount: A:0.43, C:0.23, G:0.12, T:0.23
Consensus pattern (31 bp):
ATAGTGCCTGATAAAATATAAACACCAGCAC
Found at i:44169098 original size:14 final size:13
Alignment explanation
Indices: 44169065--44169108 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
44169055 TTTGTGTTTA
*
44169065 TTATGTGTGAATT
1 TTATGTGTTAATT
44169078 TATATGTGTTAATT
1 T-TATGTGTTAATT
*
44169092 TTCATGTTTTAATT
1 TT-ATGTGTTAATT
44169106 TTA
1 TTA
44169109 CTGTTTAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 3 0.11
14 24 0.89
ACGTcount: A:0.25, C:0.02, G:0.14, T:0.59
Consensus pattern (13 bp):
TTATGTGTTAATT
Found at i:44172353 original size:17 final size:17
Alignment explanation
Indices: 44172331--44172411 Score: 85
Period size: 17 Copynumber: 4.8 Consensus size: 17
44172321 AACTTACCAT
44172331 ACCCAATACCCACATAA
1 ACCCAATACCCACATAA
* *
44172348 ACCCAA-ACCCAAAATCA
1 ACCCAATACCC-ACATAA
44172365 ACCCAATACCCACATAA
1 ACCCAATACCCACATAA
* **
44172382 ACCCAA-ACCCAAAATCT
1 ACCCAATACCC-ACATAA
44172399 ACCCAATACCCAC
1 ACCCAATACCCAC
44172412 CACCCAACCC
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
16 8 0.15
17 36 0.69
18 8 0.15
ACGTcount: A:0.47, C:0.43, G:0.00, T:0.10
Consensus pattern (17 bp):
ACCCAATACCCACATAA
Found at i:44172371 original size:34 final size:34
Alignment explanation
Indices: 44172331--44172411 Score: 153
Period size: 34 Copynumber: 2.4 Consensus size: 34
44172321 AACTTACCAT
44172331 ACCCAATACCCACATAAACCCAAACCCAAAATCA
1 ACCCAATACCCACATAAACCCAAACCCAAAATCA
*
44172365 ACCCAATACCCACATAAACCCAAACCCAAAATCT
1 ACCCAATACCCACATAAACCCAAACCCAAAATCA
44172399 ACCCAATACCCAC
1 ACCCAATACCCAC
44172412 CACCCAACCC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 46 1.00
ACGTcount: A:0.47, C:0.43, G:0.00, T:0.10
Consensus pattern (34 bp):
ACCCAATACCCACATAAACCCAAACCCAAAATCA
Found at i:44174516 original size:15 final size:15
Alignment explanation
Indices: 44174496--44174540 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
44174486 CTATTTTAAG
44174496 TTTATTTTAATTTTA
1 TTTATTTTAATTTTA
*
44174511 TTTATTTTAA-ATTA
1 TTTATTTTAATTTTA
44174525 -TTATTTTAGATTTTA
1 TTTATTTTA-ATTTTA
44174540 T
1 T
44174541 ATTAATTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
13 8 0.32
14 4 0.16
15 13 0.52
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (15 bp):
TTTATTTTAATTTTA
Found at i:44180719 original size:56 final size:56
Alignment explanation
Indices: 44180656--44180785 Score: 224
Period size: 56 Copynumber: 2.3 Consensus size: 56
44180646 ACCATGGAAT
44180656 CGATATATGTGTGTGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTC
1 CGATATATGTGTGTGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTC
* *
44180712 CGATATATGTGTGTAACTAAGACCACATTTAATACGTTGGCATCGATATGTGATTC
1 CGATATATGTGTGTGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTC
* *
44180768 CGATTTATGTGTGCGAGT
1 CGATATATGTGTGTGAGT
44180786 TAAACCCTAT
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 68 1.00
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.35
Consensus pattern (56 bp):
CGATATATGTGTGTGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTC
Found at i:44184846 original size:25 final size:25
Alignment explanation
Indices: 44184817--44184864 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
44184807 TTATAATATG
* * *
44184817 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
44184842 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
44184865 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:44184915 original size:9 final size:9
Alignment explanation
Indices: 44184903--44184959 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
44184893 TTTGATAAAC
44184903 ATGATATGT
1 ATGATATGT
*
44184912 ATGATATGCAC
1 ATGATATG--T
*
44184923 ATGACATGT
1 ATGATATGT
*
44184932 ATGATATGCAC
1 ATGATATG--T
44184943 ATGATATGT
1 ATGATATGT
44184952 ATGATATG
1 ATGATATG
44184960 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:44184926 original size:20 final size:20
Alignment explanation
Indices: 44184901--44184963 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
44184891 ATTTTGATAA
44184901 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
44184921 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
44184941 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
44184961 ACA
1 ACA
44184964 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:44186730 original size:28 final size:28
Alignment explanation
Indices: 44186690--44186843 Score: 265
Period size: 28 Copynumber: 5.5 Consensus size: 28
44186680 TAAATTGTAC
44186690 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
44186718 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
44186746 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
44186774 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
44186802 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
44186829 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
44186844 GACTTAATAT
Statistics
Matches: 122, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 24 0.20
28 98 0.80
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:44194892 original size:28 final size:28
Alignment explanation
Indices: 44194852--44195004 Score: 256
Period size: 28 Copynumber: 5.5 Consensus size: 28
44194842 TAAATTGTAC
44194852 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
44194880 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
44194908 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
44194936 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
44194964 AGCACTAAGT-TGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
44194990 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
44195005 GACTTAATAT
Statistics
Matches: 120, Mismatches: 4, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
26 19 0.16
27 10 0.08
28 91 0.76
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:44196616 original size:23 final size:24
Alignment explanation
Indices: 44196556--44196690 Score: 188
Period size: 24 Copynumber: 5.6 Consensus size: 24
44196546 GGGTGTTACA
*
44196556 TTATGCCCCAGTTATTAAAAGGGT
1 TTATGCCCCAGTTATTAAAAGGGC
44196580 TTATGCCCCAGTTATTAAAAGGGC
1 TTATGCCCCAGTTATTAAAAGGGC
44196604 TTATG-CCCAGTTATT-AAAGGGC
1 TTATGCCCCAGTTATTAAAAGGGC
44196626 TTATGCCCCAGTTATTAAAAAAGGGC
1 TTATGCCCCAGTTATT--AAAAGGGC
44196652 TT-TGCCCCAGTTATTAAAAGAGGC
1 TTATGCCCCAGTTATTAAAAG-GGC
*
44196676 -TAGGCCTCCAGTTAT
1 TTATGCC-CCAGTTAT
44196691 ATGATAAATC
Statistics
Matches: 102, Mismatches: 2, Indels: 13
0.87 0.02 0.11
Matches are distributed among these distances:
22 12 0.12
23 26 0.25
24 34 0.33
25 21 0.21
26 9 0.09
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (24 bp):
TTATGCCCCAGTTATTAAAAGGGC
Found at i:44196918 original size:31 final size:31
Alignment explanation
Indices: 44196883--44196946 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
44196873 CGTTTACAGT
*
44196883 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
** *
44196914 AAAGGCTTCAGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
44196945 AA
1 AA
44196947 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:44199471 original size:27 final size:26
Alignment explanation
Indices: 44199434--44199516 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
44199424 GTATGGCTGT
*
44199434 CAGAACAGATATTGTGACAGAGTCAC
1 CAGAACAGATATTGTGACAGAGCCAC
*
44199460 CAGATACAGATATTGTGGCAGAGCCAC
1 CAGA-ACAGATATTGTGACAGAGCCAC
* *
44199487 CAGAACAGATATTTGTGGCAAAGCCAC
1 CAGAACAGATA-TTGTGACAGAGCCAC
44199514 CAG
1 CAG
44199517 TATACTCCCT
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 11 0.21
27 41 0.79
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (26 bp):
CAGAACAGATATTGTGACAGAGCCAC
Found at i:44203664 original size:25 final size:25
Alignment explanation
Indices: 44203627--44203691 Score: 69
Period size: 27 Copynumber: 2.5 Consensus size: 25
44203617 ACCTCAGATC
44203627 TTATGAGCATTCCGATTAAA-GGCTCT
1 TTATGAGC-TTCCG-TTAAATGGCTCT
* *
44203653 TTGTGAGTTTCCCGTTAAATTGGCTCT
1 TTATGAGCTT-CCGTTAAA-TGGCTCT
44203680 TTATGAGCTTCC
1 TTATGAGCTTCC
44203692 CGATATGGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
25 7 0.22
26 11 0.34
27 14 0.44
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (25 bp):
TTATGAGCTTCCGTTAAATGGCTCT
Found at i:44204733 original size:31 final size:32
Alignment explanation
Indices: 44204695--44204759 Score: 123
Period size: 31 Copynumber: 2.1 Consensus size: 32
44204685 TAAAATGTGT
44204695 TGACTTCGTCAAACAATCAACGACAA-CTAAA
1 TGACTTCGTCAAACAATCAACGACAACCTAAA
44204726 TGACTTCGTCAAACAATCAACGACAACCTAAA
1 TGACTTCGTCAAACAATCAACGACAACCTAAA
44204758 TG
1 TG
44204760 GCGCCTTTCT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 26 0.79
32 7 0.21
ACGTcount: A:0.43, C:0.26, G:0.11, T:0.20
Consensus pattern (32 bp):
TGACTTCGTCAAACAATCAACGACAACCTAAA
Found at i:44208620 original size:11 final size:12
Alignment explanation
Indices: 44208604--44208632 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
44208594 CGCCACGTTC
44208604 TATCTTTCCA-T
1 TATCTTTCCATT
44208615 TATCTTTCCATT
1 TATCTTTCCATT
44208627 TATCTT
1 TATCTT
44208633 CTTTATTCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 10 0.59
12 7 0.41
ACGTcount: A:0.17, C:0.24, G:0.00, T:0.59
Consensus pattern (12 bp):
TATCTTTCCATT
Found at i:44211748 original size:23 final size:23
Alignment explanation
Indices: 44211722--44211767 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
44211712 GAATAAAAGG
44211722 ATTAATTTTGAATACATATAGAT
1 ATTAATTTTGAATACATATAGAT
44211745 ATTAATTTTGAATACATATAGAT
1 ATTAATTTTGAATACATATAGAT
44211768 CAAGAAAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.43
Consensus pattern (23 bp):
ATTAATTTTGAATACATATAGAT
Found at i:44213405 original size:60 final size:62
Alignment explanation
Indices: 44213309--44213457 Score: 164
Period size: 60 Copynumber: 2.5 Consensus size: 62
44213299 CTATTCAGAA
* * *
44213309 ATCAGAGT-TAACTAGGCCTTAGCCTATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGT
1 ATCAGAGTAT-ACTGGGCC-TAGCCCATATCAATATTAATCTGGGCCATAGCCCTATTACAAGT
* * *
44213370 ATCAGAGTATACTGGGCCTAGCCCATATCAGTATTAATCTGGGTCGTAGCCCTATTACAAGT
1 ATCAGAGTATACTGGGCCTAGCCCATATCAATATTAATCTGGGCCATAGCCCTATTACAAGT
* * *
44213432 -TGAGA-TATATTGGGCCTTGCCCATAT
1 ATCAGAGTATACTGGGCCTAGCCCATAT
44213458 TAACACAGTT
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
60 49 0.64
61 23 0.30
62 4 0.05
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (62 bp):
ATCAGAGTATACTGGGCCTAGCCCATATCAATATTAATCTGGGCCATAGCCCTATTACAAGT
Found at i:44213504 original size:19 final size:20
Alignment explanation
Indices: 44213462--44213505 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
44213452 CCATATTAAC
** *
44213462 ACAGTTGGACCCATTTCAAT
1 ACAGTTGGACCCATAACAAA
44213482 ACAGTTGG-CCCATAACAAA
1 ACAGTTGGACCCATAACAAA
44213501 ACAGT
1 ACAGT
44213506 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.23
Consensus pattern (20 bp):
ACAGTTGGACCCATAACAAA
Found at i:44216832 original size:33 final size:33
Alignment explanation
Indices: 44216794--44216860 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
44216784 ATAACATTCA
44216794 TATGGCTAAATGGATAACTTCATATATGCACAT
1 TATGGCTAAATGGATAACTTCATATATGCACAT
44216827 TATGGCTAAATGGATAACTTCATATATGCACAT
1 TATGGCTAAATGGATAACTTCATATATGCACAT
44216860 T
1 T
44216861 CTCATAAACA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (33 bp):
TATGGCTAAATGGATAACTTCATATATGCACAT
Found at i:44217154 original size:40 final size:40
Alignment explanation
Indices: 44217109--44217297 Score: 292
Period size: 40 Copynumber: 4.7 Consensus size: 40
44217099 GCTACTAGCT
* *
44217109 CAAATGCCTTTGGGACTTAGCCCGGTGATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
44217149 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
44217189 GAAATGCCTTCGGGACTTAGCCCGGAATT-T-GTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGG--TTATAGTAACTCGCA
44217229 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
44217269 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
44217298 CAATCCGAAT
Statistics
Matches: 137, Mismatches: 8, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
38 2 0.01
39 1 0.01
40 131 0.96
41 1 0.01
42 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:44222913 original size:37 final size:37
Alignment explanation
Indices: 44222863--44222941 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
44222853 TTATTACGAA
* * *
44222863 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
44222900 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
44222937 GTCTT
1 GTCTT
44222942 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:44223131 original size:47 final size:47
Alignment explanation
Indices: 44223060--44223619 Score: 870
Period size: 47 Copynumber: 11.7 Consensus size: 47
44223050 CCCTTCGGGA
* * * * * * *
44223060 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
44223107 CCTATCACATATAGACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44223154 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44223201 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
44223248 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44223297 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44223344 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44223391 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATT-AGGC
*
44223440 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44223487 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44223534 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44223583 CTTATCACATATATATACACTTTCACATTCATCACAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACAT
44223620 TTATCCAAAT
Statistics
Matches: 481, Mismatches: 24, Indels: 14
0.93 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 316 0.66
49 163 0.34
50 1 0.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:44223138 original size:25 final size:25
Alignment explanation
Indices: 44223110--44223188 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
44223100 ACTCGACCCT
44223110 ATCACATATAGACACTTTCACATTC
1 ATCACATATAGACACTTTCACATTC
* * * *
44223135 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATAGACACTTTC-ACATTC
*
44223157 ATCACATATATACACTTTCACATTC
1 ATCACATATAGACACTTTCACATTC
44223182 ATCACAT
1 ATCACAT
44223189 CGGCCATTAG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 11 0.28
23 6 0.15
24 5 0.12
25 18 0.45
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.33
Consensus pattern (25 bp):
ATCACATATAGACACTTTCACATTC
Found at i:44223290 original size:96 final size:94
Alignment explanation
Indices: 44223060--44223619 Score: 870
Period size: 96 Copynumber: 5.9 Consensus size: 94
44223050 CCCTTCGGGA
* * * * * * * * *
44223060 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGACCCTATCACATATAGACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
44223125 TTTCACATTCATCACATTGGCCATTCGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
44223154 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
44223219 TTTCACATTCACCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
44223248 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
44223313 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
44223344 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
44223409 ACTTTCACATTCATCACATTGGCCATTCA-GC
64 ACTTTCACATTCATCACATCGGCCATT-AGGC
*
44223440 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
44223505 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
44223534 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
44223599 ACACTTTCACATTCATCACAT
62 ACACTTTCACATTCATCACAT
44223620 TTATCCAAAT
Statistics
Matches: 432, Mismatches: 24, Indels: 16
0.92 0.05 0.03
Matches are distributed among these distances:
93 1 0.00
94 179 0.41
96 224 0.52
97 1 0.00
98 27 0.06
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:44223316 original size:143 final size:143
Alignment explanation
Indices: 44223060--44223619 Score: 971
Period size: 143 Copynumber: 3.9 Consensus size: 143
44223050 CCCTTCGGGA
* * * * * * * * *
44223060 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGACCCTATCAC--ATATAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
44223123 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
*
44223188 TCGGCCATTAGGC
131 TCGGCTATTAGGC
*
44223201 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
44223266 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
44223331 TCGGCTATTAGGC
131 TCGGCTATTAGGC
44223344 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
44223409 ACTTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
44223474 TCGGCTATTAGGC
131 TCGGCTATTAGGC
44223487 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
44223552 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCATCA
44223617 CAT
129 CAT
44223620 TTATCCAAAT
Statistics
Matches: 400, Mismatches: 15, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
141 46 0.12
143 327 0.82
145 27 0.07
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCTATTAGGC
Found at i:44227426 original size:40 final size:40
Alignment explanation
Indices: 44227394--44227705 Score: 489
Period size: 40 Copynumber: 7.8 Consensus size: 40
44227384 CCAGCATGAT
** * * *
44227394 TGCTCTTCAAGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
44227434 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
44227474 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
44227514 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
44227554 TGCTCCTCGAGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
44227594 TGCTCTTCGGAACTCAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
44227634 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
44227674 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
44227706 CTCAATTCTC
Statistics
Matches: 251, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 251 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:44228970 original size:37 final size:37
Alignment explanation
Indices: 44228920--44228998 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
44228910 TTATTACGAA
* * *
44228920 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
44228957 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
44228994 GTCTT
1 GTCTT
44228999 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:44229195 original size:47 final size:47
Alignment explanation
Indices: 44229117--44229676 Score: 859
Period size: 47 Copynumber: 11.7 Consensus size: 47
44229107 CCCTTCGGGA
* * * * * * *
44229117 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
44229164 CCTACCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44229211 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
44229258 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
44229305 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44229354 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44229401 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
44229448 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44229497 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44229544 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44229591 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44229640 CTTATCACATATATATACACTTTCACATTCATCACAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACAT
44229677 TTATCCAAAT
Statistics
Matches: 477, Mismatches: 30, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
47 315 0.66
49 162 0.34
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:44229197 original size:25 final size:25
Alignment explanation
Indices: 44229169--44229245 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
44229159 TCGACCCTAC
44229169 CACATATATACACTTTCACATTCAT
1 CACATATATACACTTTCACATTCAT
** * * *
44229194 CACAT-T-GGC-CATTCGGCCTT-AT
1 CACATATATACACTTTC-ACATTCAT
44229216 CACATATATACACTTTCACATTCAT
1 CACATATATACACTTTCACATTCAT
44229241 CACAT
1 CACAT
44229246 CGGCCATTAG
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
22 11 0.30
23 5 0.14
24 5 0.14
25 16 0.43
ACGTcount: A:0.31, C:0.30, G:0.05, T:0.34
Consensus pattern (25 bp):
CACATATATACACTTTCACATTCAT
Found at i:44229347 original size:96 final size:94
Alignment explanation
Indices: 44229117--44229676 Score: 859
Period size: 96 Copynumber: 5.9 Consensus size: 94
44229107 CCCTTCGGGA
* * * * * * * * *
44229117 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGACCCTACCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
44229182 TTTCACATTCATCACATTGGCCATTCGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
44229211 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
44229276 TTTCACATTCACCACATCGGCCATTAAGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
44229305 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
44229370 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
44229401 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
44229466 ACTTTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
44229497 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
44229562 TTTCACATTTATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
44229591 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
44229656 ACACTTTCACATTCATCACAT
62 ACACTTTCACATTCATCACAT
44229677 TTATCCAAAT
Statistics
Matches: 428, Mismatches: 30, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
94 178 0.42
96 224 0.52
98 26 0.06
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:44229373 original size:143 final size:143
Alignment explanation
Indices: 44229117--44229676 Score: 962
Period size: 143 Copynumber: 3.9 Consensus size: 143
44229107 CCCTTCGGGA
* * * * * * * * *
44229117 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGACCCTA-C-CACATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
44229180 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
*
44229245 TCGGCCATTAGGC
131 TCGGCTATTAGGC
* *
44229258 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
44229323 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
44229388 TCGGCTATTAGGC
131 TCGGCTATTAGGC
44229401 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
44229466 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
44229531 TCGGCTATTAGGC
131 TCGGCTATTAGGC
*
44229544 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
44229609 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCATCA
44229674 CAT
129 CAT
44229677 TTATCCAAAT
Statistics
Matches: 399, Mismatches: 16, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
141 41 0.10
142 1 0.00
143 330 0.83
145 27 0.07
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCTATTAGGC
Found at i:44235297 original size:40 final size:40
Alignment explanation
Indices: 44235253--44235401 Score: 187
Period size: 40 Copynumber: 3.7 Consensus size: 40
44235243 GCTACTAGCT
* * *
44235253 CAAATGCCTTTGAGACTTAACCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
44235293 CAAATGCCTTCGGGACTTAGCCCAGTTAGAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
44235333 GAAATGCCTTCGGGACTTAGCCCGGAATT-T-GTCAC-CAGCA
1 CAAATGCCTTCGGGACTTAGCCCGG--TTATAGTAACTC-GCA
44235373 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
44235402 CAATCCGAAT
Statistics
Matches: 95, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 2 0.02
40 89 0.94
42 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:44238664 original size:28 final size:29
Alignment explanation
Indices: 44238630--44238702 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
44238620 GTACAATAAG
44238630 CCCGCACACTTAGTGCT-TA-ATAGTCGAA
1 CCCGCACACTTAGTGCTATACA-AGTCGAA
* * *
44238658 CTCGCACACTTAGTGCTATACAATTTGAA
1 CCCGCACACTTAGTGCTATACAAGTCGAA
44238687 CCCGCACACTTAGTGC
1 CCCGCACACTTAGTGC
44238703 CAATCTCATG
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
28 16 0.41
29 22 0.56
30 1 0.03
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.26
Consensus pattern (29 bp):
CCCGCACACTTAGTGCTATACAAGTCGAA
Found at i:44241857 original size:27 final size:27
Alignment explanation
Indices: 44241827--44241887 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
44241817 CGACTTGTAA
*
44241827 AATTACCAAAGTACCCCCGATTTACAT
1 AATTACCAAAGTACCCCCGATTTACAG
**** *
44241854 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCCCGATTTACAG
44241881 AATTACC
1 AATTACC
44241888 GTTTTACCTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.28, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACCAAAGTACCCCCGATTTACAG
Found at i:44241888 original size:27 final size:27
Alignment explanation
Indices: 44241838--44241939 Score: 118
Period size: 27 Copynumber: 3.8 Consensus size: 27
44241828 ATTACCAAAG
* *
44241838 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
44241865 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* ** *
44241892 TACCTTTAATTTATAGAATTA-C-TATT
1 TACCCTCGATTTACAGAATTACCGT-TT
*
44241918 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
44241940 TAAAATACCA
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
25 1 0.02
26 19 0.31
27 42 0.68
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:44241957 original size:27 final size:27
Alignment explanation
Indices: 44241918--44242250 Score: 242
Period size: 27 Copynumber: 12.3 Consensus size: 27
44241908 AATTACTATT
* * * *
44241918 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* *
44241945 TACCATTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * **
44241972 TACCCTCGATCAATAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * * *
44241999 TACCC-TGGTCTGTAAAATTGCTAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* *
44242025 TACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
44242052 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* *
44242079 TACCAC-TGGTTTGTGAAATTACCAAAA
1 TACC-CTTGGTTTATAAAATTACCAAAA
*** *
44242106 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
44242133 TACCCCTGATTTACAAAATTA-CAGAAA
1 TACCCTTGGTTTATAAAATTACCA-AAA
* * *
44242160 TACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTTG-GTTTAT-AAAATTACCA-AAA
* * **
44242189 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
* * *
44242216 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGGTTTATAAAATTACCAAAA
*
44242243 CACCCTTG
1 TACCCTTG
44242251 TAGGGTGAAA
Statistics
Matches: 250, Mismatches: 49, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
26 23 0.09
27 200 0.80
28 8 0.03
29 19 0.08
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
TACCCTTGGTTTATAAAATTACCAAAA
Found at i:44242354 original size:26 final size:27
Alignment explanation
Indices: 44242281--44242358 Score: 85
Period size: 26 Copynumber: 3.0 Consensus size: 27
44242271 ACCCCTATTA
* *
44242281 GGTAAAAAGACCGTAA-AGCCCTGTAG
1 GGTAAAATGACCGTAATAGCCCTGTAT
*
44242307 GGTAAAGTGACCGTAATA-CCCTGTAT
1 GGTAAAATGACCGTAATAGCCCTGTAT
44242333 GGTAAAATGA-CG-AATATGCCCT-TAT
1 GGTAAAATGACCGTAATA-GCCCTGTAT
44242358 G
1 G
44242359 TTCCGTATGA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
24 4 0.09
25 6 0.13
26 34 0.76
27 1 0.02
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (27 bp):
GGTAAAATGACCGTAATAGCCCTGTAT
Found at i:44243231 original size:24 final size:25
Alignment explanation
Indices: 44243149--44243241 Score: 161
Period size: 25 Copynumber: 3.8 Consensus size: 25
44243139 AGGAAGTGCT
*
44243149 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
44243174 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
44243199 AAAAGGGCTTTGCCCCAGTTTATC-
1 AAAAGGGCTTTGCCCCAGTTTACCG
44243223 AAAAGGGCTTTGCCCCAGT
1 AAAAGGGCTTTGCCCCAGT
44243242 AATTAAAAGA
Statistics
Matches: 66, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
24 19 0.29
25 47 0.71
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:44243255 original size:24 final size:24
Alignment explanation
Indices: 44243149--44243255 Score: 117
Period size: 25 Copynumber: 4.4 Consensus size: 24
44243139 AGGAAGTGCT
* * *
44243149 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTAATC
* *
44243173 GAAAAGGGCTTTGCCCCAGTTTACC
1 -AAAAGGGCTTTGCCCCAGTTAATC
*
44243198 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTAATC
*
44243223 AAAAGGGCTTTGCCCCAG-TAATT
1 AAAAGGGCTTTGCCCCAGTTAATC
44243246 AAAAGAGGCT
1 AAAAG-GGCT
44243256 AGGCATCCAG
Statistics
Matches: 77, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
23 8 0.10
24 22 0.29
25 47 0.61
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.23
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTAATC
Found at i:44247589 original size:27 final size:27
Alignment explanation
Indices: 44247559--44247736 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
44247549 ATATTGAGTC
* * *
44247559 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
44247586 CGCACACTTAGTGCTACGTAATCAAGT
1 CGCACACTTAGTGCTACATAGTCAACT
44247613 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
** * *
44247641 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
44247668 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
44247695 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
44247722 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
44247737 GTACAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:44247698 original size:82 final size:81
Alignment explanation
Indices: 44247580--44247735 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
44247570 TGCTATATAA
* *
44247580 TCAACTCGCACACTTAGTGCTACGTAATCAAGTCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAGTCGCACACTTAGTGCAACATAGTCAAA-TCGCA
44247645 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
44247662 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAGTCGCACACTTAGTGCAACATAGTCAAATCGCA
44247726 CACTTAGTGC
65 CACTTAGTGC
44247736 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAGTCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:44250179 original size:17 final size:18
Alignment explanation
Indices: 44250147--44250181 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
44250137 CAATGTGGTT
44250147 TACCCGTGTGGGCCCACA
1 TACCCGTGTGGGCCCACA
*
44250165 TACCTGTGT-GGCCCACA
1 TACCCGTGTGGGCCCACA
44250182 CGGCTCCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.17, C:0.37, G:0.26, T:0.20
Consensus pattern (18 bp):
TACCCGTGTGGGCCCACA
Found at i:44250767 original size:17 final size:17
Alignment explanation
Indices: 44250742--44250782 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
44250732 ACGAAAAGAA
44250742 AAGACGAGATAGGGGAG
1 AAGACGAGATAGGGGAG
* *
44250759 AAGATGAGATGGGGGAG
1 AAGACGAGATAGGGGAG
*
44250776 AAAACGA
1 AAGACGA
44250783 AACAAAGATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.44, C:0.05, G:0.44, T:0.07
Consensus pattern (17 bp):
AAGACGAGATAGGGGAG
Found at i:44256048 original size:21 final size:20
Alignment explanation
Indices: 44256016--44256059 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
44256006 GGTTTCAGTA
* *
44256016 CAGTCTATCTATAGTAGTCT
1 CAGTCTACCTATAGCAGTCT
*
44256036 CAGTACTACCTATAGCAGTTT
1 CAGT-CTACCTATAGCAGTCT
44256057 CAG
1 CAG
44256060 GATATACTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (20 bp):
CAGTCTACCTATAGCAGTCT
Found at i:44260452 original size:16 final size:16
Alignment explanation
Indices: 44260431--44260461 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
44260421 TTTTATTACC
*
44260431 ATAATTATTATATTAT
1 ATAATTATAATATTAT
44260447 ATAATTATAATATTA
1 ATAATTATAATATTA
44260462 ACTTATTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
ATAATTATAATATTAT
Found at i:44261854 original size:18 final size:18
Alignment explanation
Indices: 44261831--44261868 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
44261821 TTGAGGTATG
44261831 TAATTTACT-CGTTTTTGA
1 TAATTT-CTACGTTTTTGA
*
44261849 TAATTTTTACGTTTTTGA
1 TAATTTCTACGTTTTTGA
44261867 TA
1 TA
44261869 TCGTTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 1 0.06
18 17 0.94
ACGTcount: A:0.24, C:0.08, G:0.11, T:0.58
Consensus pattern (18 bp):
TAATTTCTACGTTTTTGA
Found at i:44265726 original size:49 final size:51
Alignment explanation
Indices: 44265627--44265730 Score: 124
Period size: 49 Copynumber: 2.1 Consensus size: 51
44265617 CTCCAAAATG
* * **
44265627 AAAATGAAAATGGAGAAAATAAAATCATTTGGAAATGACTGTGGTTTTCTC
1 AAAATGAAAATGGAGAAAATAAAATCATTTAGAAATGACTATGGAATTCTC
* *
44265678 AAAATGAAAAT-GAG-AAATCAATTCATTTAGAAATGAAC-ATGGAATTCTC
1 AAAATGAAAATGGAGAAAATAAAATCATTTAGAAATG-ACTATGGAATTCTC
44265727 AAAA
1 AAAA
44265731 ATGATTGGAA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
49 30 0.65
50 5 0.11
51 11 0.24
ACGTcount: A:0.48, C:0.09, G:0.16, T:0.27
Consensus pattern (51 bp):
AAAATGAAAATGGAGAAAATAAAATCATTTAGAAATGACTATGGAATTCTC
Found at i:44271034 original size:5 final size:5
Alignment explanation
Indices: 44271024--44271051 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
44271014 GTGAGCGTCC
44271024 AATCA AATCA AATCA AATCA AATCA AAT
1 AATCA AATCA AATCA AATCA AATCA AAT
44271052 AAAAAAGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.61, C:0.18, G:0.00, T:0.21
Consensus pattern (5 bp):
AATCA
Found at i:44271700 original size:23 final size:21
Alignment explanation
Indices: 44271656--44271706 Score: 68
Period size: 23 Copynumber: 2.4 Consensus size: 21
44271646 AAAGTTTTGG
44271656 GGGTTTG-GGGAGAAGTAAAA
1 GGGTTTGAGGGAGAAGTAAAA
*
44271676 GGGTTTGAGGGAGGGAAGTAGAA
1 GGGTTTGAGGGA--GAAGTAAAA
44271699 GGGTTTGA
1 GGGTTTGA
44271707 TATTTGGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 7 0.26
21 4 0.15
23 16 0.59
ACGTcount: A:0.29, C:0.00, G:0.49, T:0.22
Consensus pattern (21 bp):
GGGTTTGAGGGAGAAGTAAAA
Found at i:44273797 original size:20 final size:21
Alignment explanation
Indices: 44273772--44273822 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
44273762 ATTAATTATT
*
44273772 TATAAAATT-TAATTTGAATA
1 TATAAAATTATAATTTAAATA
*
44273792 TAT-AAATTATATTTTAAATA
1 TATAAAATTATAATTTAAATA
44273812 T-TAAAA-TATAA
1 TATAAAATTATAA
44273823 CCAATAAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (21 bp):
TATAAAATTATAATTTAAATA
Found at i:44274007 original size:16 final size:16
Alignment explanation
Indices: 44273985--44274053 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
44273975 TTTGGTTCGC
44273985 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
44274001 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
44274017 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
44274034 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
44274050 TGTA
1 TGTA
44274054 ATAGCTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:44274031 original size:33 final size:32
Alignment explanation
Indices: 44273985--44274053 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
44273975 TTTGGTTCGC
44273985 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
*
44274017 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGCGTATTGGATTAGAGG
44274050 TGTA
1 TGTA
44274054 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 6 0.17
33 29 0.83
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTAGAGG
Found at i:44274118 original size:44 final size:45
Alignment explanation
Indices: 44274034--44274124 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
44274024 GGATTAGAGG
* * *
44274034 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
44274079 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
44274123 TG
1 TG
44274125 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:44274310 original size:18 final size:17
Alignment explanation
Indices: 44274289--44274323 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
44274279 TTATTATTAA
*
44274289 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
44274307 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
44274324 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:44274485 original size:120 final size:120
Alignment explanation
Indices: 44274272--44275281 Score: 1889
Period size: 120 Copynumber: 8.4 Consensus size: 120
44274262 ATCATATTTA
*
44274272 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
*
44274337 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* *
44274392 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
*
44274457 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
44274512 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
44274577 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
44274632 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
44274697 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
44274752 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
*
44274817 TATTCTTATATTAATTTACTCAAATCATAATATATGATATTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
44274872 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
44274937 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
44274992 AACATAATTATTATTAAATATA-TTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
44275056 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGT-AAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
44275110 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
44275175 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
44275230 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAAT
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAAT
44275282 AAAAATAAAA
Statistics
Matches: 877, Mismatches: 11, Indels: 4
0.98 0.01 0.00
Matches are distributed among these distances:
118 33 0.04
119 168 0.19
120 676 0.77
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:44274550 original size:18 final size:17
Alignment explanation
Indices: 44274529--44274563 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
44274519 TTATTATTAA
*
44274529 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
44274547 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
44274564 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:44274670 original size:18 final size:17
Alignment explanation
Indices: 44274649--44274683 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
44274639 TTATTATTAA
*
44274649 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
44274667 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
44274684 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:44275066 original size:37 final size:37
Alignment explanation
Indices: 44275025--44275192 Score: 90
Period size: 37 Copynumber: 4.3 Consensus size: 37
44275015 TTAATTAAAC
44275025 TATATAATTTAAAAAAATTCTTAATAATTAATATTCT
1 TATATAATTTAAAAAAATTCTTAATAATTAATATTCT
*** * * * *
44275062 TATATTAATTTACTCAAA-TCATAAT-ATATGATACTGT
1 TATA-TAATTTAAAAAAATTCTTAATAAT-TAATATTCT
* * * * **
44275099 AAATATAAATTAACATAATTATTATTAAATATATTTTAATTAAAC-
1 -TATATAATTTAA-A-AA-AATTCTT-AATA-A--TTAA-TATTCT
44275144 TATATAATTTAAAAAAATTCTTAATAATTAATATTCT
1 TATATAATTTAAAAAAATTCTTAATAATTAATATTCT
44275181 TATATTAATTTA
1 TATA-TAATTTA
44275193 CTCAAATCAT
Statistics
Matches: 91, Mismatches: 25, Indels: 29
0.63 0.17 0.20
Matches are distributed among these distances:
36 5 0.05
37 30 0.33
38 20 0.22
39 2 0.02
40 5 0.05
41 7 0.08
42 5 0.05
43 1 0.01
44 11 0.12
45 2 0.02
46 3 0.03
ACGTcount: A:0.48, C:0.06, G:0.01, T:0.45
Consensus pattern (37 bp):
TATATAATTTAAAAAAATTCTTAATAATTAATATTCT
Found at i:44276290 original size:23 final size:23
Alignment explanation
Indices: 44276262--44276345 Score: 132
Period size: 23 Copynumber: 3.7 Consensus size: 23
44276252 AACATAAACA
*
44276262 AATCAACACAATTTCCAGCAGAC
1 AATCAAAACAATTTCCAGCAGAC
*
44276285 AATCAAAACAATTTCCAGCAGCC
1 AATCAAAACAATTTCCAGCAGAC
* *
44276308 AATCATACCAATTTCCAGCAGAC
1 AATCAAAACAATTTCCAGCAGAC
44276331 AATCAAAACAATTTC
1 AATCAAAACAATTTC
44276346 AGAACAAATC
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 54 1.00
ACGTcount: A:0.44, C:0.29, G:0.07, T:0.20
Consensus pattern (23 bp):
AATCAAAACAATTTCCAGCAGAC
Found at i:44276373 original size:22 final size:21
Alignment explanation
Indices: 44276331--44276376 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
44276321 TCCAGCAGAC
* *
44276331 AATCAAAACAATTTCAGAACA
1 AATCAAAACAATATCAAAACA
*
44276352 AATCAAGACCAATATCAAAACA
1 AATCAA-AACAATATCAAAACA
44276374 AAT
1 AAT
44276377 GCAACAATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.59, C:0.20, G:0.04, T:0.17
Consensus pattern (21 bp):
AATCAAAACAATATCAAAACA
Found at i:44278256 original size:5 final size:5
Alignment explanation
Indices: 44278246--44278271 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
44278236 AAAGAGAGTT
44278246 AGAAA AGAAA AGAAA AGAAA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAAA A
44278272 AAGAGAGTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:44282955 original size:13 final size:14
Alignment explanation
Indices: 44282919--44282957 Score: 53
Period size: 13 Copynumber: 2.7 Consensus size: 14
44282909 CCTTCCTATC
44282919 AGTTTTGGGAATTAT
1 AGTTTTGGG-ATTAT
44282934 AGATTTTGGGATTA-
1 AG-TTTTGGGATTAT
44282948 AGTTTTGGGA
1 AGTTTTGGGA
44282958 GGTTAGTAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 8 0.35
14 2 0.09
15 6 0.26
16 7 0.30
ACGTcount: A:0.26, C:0.00, G:0.31, T:0.44
Consensus pattern (14 bp):
AGTTTTGGGATTAT
Found at i:44287612 original size:16 final size:17
Alignment explanation
Indices: 44287591--44287625 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
44287581 TTCGTTTTTA
*
44287591 TGATATAT-ATTTAATT
1 TGATATATGAATTAATT
44287607 TGATATATGAATTAATT
1 TGATATATGAATTAATT
44287624 TG
1 TG
44287626 TTTATTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.51
Consensus pattern (17 bp):
TGATATATGAATTAATT
Found at i:44289450 original size:57 final size:59
Alignment explanation
Indices: 44289379--44289519 Score: 155
Period size: 57 Copynumber: 2.4 Consensus size: 59
44289369 TATCGTATTA
* * *
44289379 CAGGATTACTAGTCCAGGCTAAATCCATTA-TGTAACGTATACTCAGA-AGAGATCA-AT
1 CAGGATTACCAGTCCAGGCTAAATCCATAATTGTAACATATACT-AGAGAGAGATCATAT
* * * * * *
44289436 TAGGATTACCAGTCCAGGCTAAA-CCCTAATTGTAACATATGCTTGAGAGGGATTATAT
1 CAGGATTACCAGTCCAGGCTAAATCCATAATTGTAACATATACTAGAGAGAGATCATAT
*
44289494 CAGGATTACCCGTCCAGGCTAAATCC
1 CAGGATTACCAGTCCAGGCTAAATCC
44289520 TTTCCATAAT
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
56 6 0.09
57 38 0.55
58 23 0.33
59 2 0.03
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (59 bp):
CAGGATTACCAGTCCAGGCTAAATCCATAATTGTAACATATACTAGAGAGAGATCATAT
Found at i:44292240 original size:37 final size:37
Alignment explanation
Indices: 44292199--44292367 Score: 329
Period size: 37 Copynumber: 4.6 Consensus size: 37
44292189 ATATGAAGTT
44292199 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
44292236 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
*
44292273 ATCGGGTCTTACCCGGACATAATCTCCACACATAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
44292310 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
44292347 ATCGGGTCTTACCCGGACATA
1 ATCGGGTCTTACCCGGACATA
44292368 TTTCCAAGTT
Statistics
Matches: 130, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 130 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
Found at i:44292633 original size:47 final size:47
Alignment explanation
Indices: 44292571--44293006 Score: 611
Period size: 47 Copynumber: 9.1 Consensus size: 47
44292561 ACACGTTTCG
* * * **
44292571 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
44292618 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
44292665 CATTGGCCATTCGGCCTTATCACACAAACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
44292712 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
44292759 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCA
44292812 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
44292859 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
44292910 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
44292957 CAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
44293004 CAT
1 CAT
44293007 AAAATCCTAA
Statistics
Matches: 353, Mismatches: 26, Indels: 20
0.88 0.07 0.05
Matches are distributed among these distances:
47 265 0.75
49 1 0.00
51 45 0.13
53 42 0.12
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:44299065 original size:46 final size:46
Alignment explanation
Indices: 44299012--44299187 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
44299002 TGGTTGAGCA
44299012 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
44299058 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
44299103 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
44299151 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
44299188 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:44299168 original size:93 final size:93
Alignment explanation
Indices: 44299009--44299180 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
44298999 GAATGGTTGA
* * *
44299009 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
44299074 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
44299102 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
44299167 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
44299181 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:44306622 original size:46 final size:46
Alignment explanation
Indices: 44306572--44306747 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
44306562 TGGTTGAGCA
44306572 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
44306618 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
44306663 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
44306711 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
44306748 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:44306728 original size:93 final size:93
Alignment explanation
Indices: 44306569--44306740 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
44306559 GGATGGTTGA
* * *
44306569 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
44306634 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
44306662 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
44306727 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
44306741 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:44308856 original size:65 final size:65
Alignment explanation
Indices: 44308728--44308868 Score: 257
Period size: 65 Copynumber: 2.2 Consensus size: 65
44308718 GATTATTGGG
44308728 AAAATTAATTTTGATCAAGTAAAATTAAATTAACCAAATTAATTAAAATTAATATAATATTTTTT
1 AAAATTAATTTTGATCAAGTAAAATTAAATTAACCAAATTAATTAAAATTAATATAATATTTTTT
**
44308793 AAAATTAATTTTGATCAAGTAAAATTAAATTAACCAAATTAATT-AAATTAATATGGTATTTTTT
1 AAAATTAATTTTGATCAAGTAAAATTAAATTAACCAAATTAATTAAAATTAATATAATATTTTTT
44308857 AAAATTAATTTT
1 AAAATTAATTTT
44308869 CAAGTCAAAC
Statistics
Matches: 74, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
64 30 0.41
65 44 0.59
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (65 bp):
AAAATTAATTTTGATCAAGTAAAATTAAATTAACCAAATTAATTAAAATTAATATAATATTTTTT
Found at i:44310482 original size:2 final size:2
Alignment explanation
Indices: 44310475--44310517 Score: 52
Period size: 2 Copynumber: 22.0 Consensus size: 2
44310465 CTATAAAATA
* * *
44310475 AT AT AT AT AT GT AT AT AT AT AC AT AT AT AT AT GT AT AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
44310516 AT
1 AT
44310518 CATCCCAATG
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.47
Consensus pattern (2 bp):
AT
Found at i:44310728 original size:2 final size:2
Alignment explanation
Indices: 44310721--44310771 Score: 50
Period size: 2 Copynumber: 26.0 Consensus size: 2
44310711 CTATAAAATA
* * * * *
44310721 AT AT AT AT AT AT AC AC AT AT AT AT GT GT AT AT AT AT AT AT GT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
44310763 AT AT A- AT AT
1 AT AT AT AT AT
44310772 CATCCCAATG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.45
Consensus pattern (2 bp):
AT
Found at i:44310754 original size:14 final size:14
Alignment explanation
Indices: 44310721--44310771 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
44310711 CTATAAAATA
**
44310721 ATATATATATATAC
1 ATATATATATATGT
* *
44310735 ACATATATATGTGT
1 ATATATATATATGT
44310749 ATATATATATATGT
1 ATATATATATATGT
44310763 ATATA-ATAT
1 ATATATATAT
44310772 CATCCCAATG
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
13 4 0.13
14 27 0.87
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.45
Consensus pattern (14 bp):
ATATATATATATGT
Found at i:44310756 original size:16 final size:15
Alignment explanation
Indices: 44310718--44310771 Score: 63
Period size: 16 Copynumber: 3.5 Consensus size: 15
44310708 GCACTATAAA
*
44310718 ATAATATATATATAT
1 ATAATATATATGTAT
* *
44310733 ACACATATATATGTGT
1 ATA-ATATATATGTAT
44310749 ATATATATATATGTAT
1 ATA-ATATATATGTAT
44310765 ATAATAT
1 ATAATAT
44310772 CATCCCAATG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
15 6 0.19
16 26 0.81
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (15 bp):
ATAATATATATGTAT
Found at i:44310879 original size:254 final size:246
Alignment explanation
Indices: 44310438--44310933 Score: 875
Period size: 254 Copynumber: 2.0 Consensus size: 246
44310428 TGAGACAAAA
*
44310438 TACATCATCGTGATGTGACTAATAGCACTATAAAATAATATATATATGTATATATATACATATAT
1 TACATCATCGTGATGTGACTAATAGCACTATAAAATAATATATATATATATATATATACATATAT
*
44310503 ATATGTATATAATATCATCCCAATGTAAAAAGTATTAGGTGTCTGTAATGATAAGGGGCAAGAGT
66 ATATGTATATAATATCATCCCAATGTAAAAAGTATTAGGTGTCTGTAATGATAAGGGGAAAGAGT
44310568 TGAAAAATGTGCCCATATTGTAGTAAAGATATGACTTTTTTCTACGTATTTGAACGATGAATAAA
131 TGAAAAATGTGCCCATATTGTAGTAAAGATATGACTTTTTTCTACGTATTTGAACGATGAATAAA
44310633 TGAATAAAGTTAATTTCACAATTCATTATTACATCTTTTGTATTTTTAAAG
196 TGAATAAAGTTAATTTCACAATTCATTATTACATCTTTTGTATTTTTAAAG
44310684 TACATCATCGTGATGTGACTAATAGCACTATAAAATAATATATATATATACACATATATATGTGT
1 TACATCATCGTGATGTGACTAATAGCACTATAAAATAATATATATATAT----ATATATA----T
*
44310749 ATATATATATATGTATATAATATCATCCCAATGTAAAAAGTATTAGGTGTCTGTAATGATAAGGG
58 ACATATATATATGTATATAATATCATCCCAATGTAAAAAGTATTAGGTGTCTGTAATGATAAGGG
*
44310814 GAAAGAGTTGAAAAATGTGCCCATATTGTAGTAAAGATATGACTTTTTTCTATGTATTTGAACGA
123 GAAAGAGTTGAAAAATGTGCCCATATTGTAGTAAAGATATGACTTTTTTCTACGTATTTGAACGA
*
44310879 TGAATAAATGAATAAAGTTAATTTCACAATTCATTATTATATCTTTTGTATTTTT
188 TGAATAAATGAATAAAGTTAATTTCACAATTCATTATTACATCTTTTGTATTTTT
44310934 TTCTTTCATG
Statistics
Matches: 237, Mismatches: 5, Indels: 8
0.95 0.02 0.03
Matches are distributed among these distances:
246 48 0.20
250 7 0.03
254 182 0.77
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.38
Consensus pattern (246 bp):
TACATCATCGTGATGTGACTAATAGCACTATAAAATAATATATATATATATATATATACATATAT
ATATGTATATAATATCATCCCAATGTAAAAAGTATTAGGTGTCTGTAATGATAAGGGGAAAGAGT
TGAAAAATGTGCCCATATTGTAGTAAAGATATGACTTTTTTCTACGTATTTGAACGATGAATAAA
TGAATAAAGTTAATTTCACAATTCATTATTACATCTTTTGTATTTTTAAAG
Found at i:44324718 original size:29 final size:30
Alignment explanation
Indices: 44324655--44324734 Score: 108
Period size: 31 Copynumber: 2.6 Consensus size: 30
44324645 ATCCGAAAAC
*
44324655 TATACATGAACTTTGGTTTAATGTGCAATTG
1 TATACATGAACTTTGATTT-ATGTGCAATTG
*
44324686 TATACATGAACTTTGATTT-TGTGCAATTT
1 TATACATGAACTTTGATTTATGTGCAATTG
*
44324715 TATACATGAAATTTTGATTT
1 TATACATG-AACTTTGATTT
44324735 GATTCAATTC
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
29 17 0.38
30 10 0.22
31 18 0.40
ACGTcount: A:0.30, C:0.09, G:0.15, T:0.46
Consensus pattern (30 bp):
TATACATGAACTTTGATTTATGTGCAATTG
Found at i:44329772 original size:33 final size:33
Alignment explanation
Indices: 44329730--44329797 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
44329720 AAGGTCTGAG
*
44329730 TGAGAGTGTTTGATTGCTGGACAGGAGCTGGAA
1 TGAGAGTGTTTGATTGCTGGACAAGAGCTGGAA
*
44329763 TGAGAGTGTTTGGTTGCTGGACAAGAGCTGGAA
1 TGAGAGTGTTTGATTGCTGGACAAGAGCTGGAA
44329796 TG
1 TG
44329798 TCAAGAAGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.24, C:0.09, G:0.40, T:0.28
Consensus pattern (33 bp):
TGAGAGTGTTTGATTGCTGGACAAGAGCTGGAA
Found at i:44343563 original size:43 final size:44
Alignment explanation
Indices: 44343503--44343588 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 44
44343493 ATATTTTATG
* * *
44343503 TTATCTTTTAGTAGTTTATT-AGAATAAGGGAACTATTTTCCCC
1 TTATCTTTTAATAGTTTATTAAGAATAAAGAAACTATTTTCCCC
* *
44343546 TTATGTTTTAATAGTTTATTAAGAATAAAGAAATTATTTTCCC
1 TTATCTTTTAATAGTTTATTAAGAATAAAGAAACTATTTTCCC
44343589 AATTAGGATT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
43 18 0.49
44 19 0.51
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (44 bp):
TTATCTTTTAATAGTTTATTAAGAATAAAGAAACTATTTTCCCC
Found at i:44357302 original size:27 final size:27
Alignment explanation
Indices: 44357272--44357328 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
44357262 TCATGTATAT
44357272 ATAGTTGTATGTATTTCTAAGAAATAC
1 ATAGTTGTATGTATTTCTAAGAAATAC
44357299 ATAGTTGTATGTATTTCTAAGAAATAC
1 ATAGTTGTATGTATTTCTAAGAAATAC
44357326 ATA
1 ATA
44357329 CTTTGAGAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.40
Consensus pattern (27 bp):
ATAGTTGTATGTATTTCTAAGAAATAC
Done.