Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 137 of 333
Found at i:44698869 original size:100 final size:99
Alignment explanation
Indices: 44698721--44698946 Score: 296
Period size: 100 Copynumber: 2.3 Consensus size: 99
44698711 GTATGCATAG
*
44698721 TAGCCTGCACTTAGTACTACACA--TGCAACCAATTATCCGGTACACATAGTAGCCTGCACTTAG
1 TAGCCTGCACTTAGTACTACACACGTG-AACAAATTATCCGGTACACATAGTAGCCTGCACTTAG
* *
44698784 TACTACACATGTGACCTAACCATCTGATACACGTAA
65 TACTACACATGCGACC-AACCATCCGATACACGTAA
* * **
44698820 TAGCCTG-ACTTAGTACTACACACGTGATCAAAGTTATCGGGTATGCATAGTAGCCTGCACTTAG
1 TAGCCTGCACTTAGTACTACACACGTGAACAAA-TTATCCGGTACACATAGTAGCCTGCACTTAG
** * *
44698884 TACTACACATGCGACCAATTATCCGGTACACGTAG
65 TACTACACATGCGACCAACCATCCGATACACGTAA
*
44698919 TAGCCTGCACTTAATACTACACACGTGA
1 TAGCCTGCACTTAGTACTACACACGTGA
44698947 CCTCACAATA
Statistics
Matches: 111, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
98 15 0.14
99 32 0.29
100 64 0.58
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (99 bp):
TAGCCTGCACTTAGTACTACACACGTGAACAAATTATCCGGTACACATAGTAGCCTGCACTTAGT
ACTACACATGCGACCAACCATCCGATACACGTAA
Found at i:44699224 original size:27 final size:27
Alignment explanation
Indices: 44699194--44699247 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
44699184 TCATACAACC
* *
44699194 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
44699221 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
44699248 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:44699538 original size:80 final size:80
Alignment explanation
Indices: 44699399--44699557 Score: 255
Period size: 80 Copynumber: 2.0 Consensus size: 80
44699389 CGAACTTACC
* **** *
44699399 TCGTATACGAAAATGGTCATTTTTACCATTTTGTCCACAACTTGGTATTTTTTTGATTTTATCCC
1 TCGTATACGAAAATGGCCATTTTTACCATTTTGTCCACAACTTGGTATTTTGCCAATTTTAGCCC
44699464 GAATTTCAATTTTCT
66 GAATTTCAATTTTCT
44699479 TCGTATACGAAAATGGCCATTTTTACCATTTTGTCCACAACTTGGTATTTTGCCAATTTTAGCCC
1 TCGTATACGAAAATGGCCATTTTTACCATTTTGTCCACAACTTGGTATTTTGCCAATTTTAGCCC
*
44699544 GAATTTTAATTTTC
66 GAATTTCAATTTTC
44699558 CTTACTCTAT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
80 72 1.00
ACGTcount: A:0.25, C:0.19, G:0.12, T:0.45
Consensus pattern (80 bp):
TCGTATACGAAAATGGCCATTTTTACCATTTTGTCCACAACTTGGTATTTTGCCAATTTTAGCCC
GAATTTCAATTTTCT
Found at i:44702192 original size:38 final size:38
Alignment explanation
Indices: 44702150--44702226 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
44702140 ACAAGAATTT
44702150 CTTAAAAAGATCAACAACCATAAAAATTTTTCTGAGAA
1 CTTAAAAAGATCAACAACCATAAAAATTTTTCTGAGAA
*
44702188 CTTAAAAAGATCAACAACCATAGAAATTTTTCTGAGAA
1 CTTAAAAAGATCAACAACCATAAAAATTTTTCTGAGAA
44702226 C
1 C
44702227 GGATAAATAC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.48, C:0.17, G:0.09, T:0.26
Consensus pattern (38 bp):
CTTAAAAAGATCAACAACCATAAAAATTTTTCTGAGAA
Found at i:44704824 original size:49 final size:49
Alignment explanation
Indices: 44704765--44705003 Score: 255
Period size: 49 Copynumber: 4.8 Consensus size: 49
44704755 ATAGACAAGG
*
44704765 TTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
* *
44704814 TTATCCGGTACACATAGTAGCCTGCACTTAG-ATCTACACATGTGACCTAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTA-CTACACATGCGACC-AA
** * * * * *
44704864 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA
* ** * *
44704914 GTTATCGGGTACGGATAGTAGCATGCACTTAGTACTACACATACGACCAA
1 -TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
* ** * *
44704964 TTATCTAGTACATGTTGTAGCCTGCACTTAATACTACACA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
44705004 CGTGACCTCA
Statistics
Matches: 155, Mismatches: 30, Indels: 10
0.79 0.15 0.05
Matches are distributed among these distances:
48 1 0.01
49 74 0.48
50 44 0.28
51 36 0.23
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (49 bp):
TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
Found at i:44704952 original size:101 final size:98
Alignment explanation
Indices: 44704779--44705009 Score: 277
Period size: 100 Copynumber: 2.3 Consensus size: 98
44704769 CTGGTACGCA
* * * *
44704779 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACAAATTATCCGGTACACATAGTAGCATGCACTTA
**
44704844 GATCTACACATGTGACCTAACCATCT-GATACACG
66 GATCTACACATACGACC-AACCATCTAG-TACACG
* **
44704878 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGGTACGGATAGTAGCATGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CAAA-TTATCCGGTACACATAGTAGCATGCACT
** *
44704943 TAG-TACTACACATACGACCAATTATCTAGTACATG
64 TAGAT-CTACACATACGACCAACCATCTAGTACACG
* *
44704978 TTGTAGCCTGCACTTAATACTACACACGTGAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGAC
44705010 CTCACAATAG
Statistics
Matches: 114, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
99 30 0.26
100 44 0.39
101 40 0.35
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACAAATTATCCGGTACACATAGTAGCATGCACTTA
GATCTACACATACGACCAACCATCTAGTACACG
Found at i:44705297 original size:27 final size:27
Alignment explanation
Indices: 44705257--44705310 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
44705247 TCATACAACC
* *
44705257 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
44705284 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
44705311 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:44705601 original size:80 final size:80
Alignment explanation
Indices: 44705460--44705622 Score: 283
Period size: 80 Copynumber: 2.0 Consensus size: 80
44705450 CACGAACTTA
* *
44705460 CCTCGTATACGAAAATGGTCATTTTTACCATTTTGTCCACAACTTGGTATTTTTCTGATTTTAGC
1 CCTCGTATACGAAAATGGCCATTTTTACCATTTTGTCCACAACTTGGTATTTTTCTAATTTTAGC
44705525 CCGAATTTCAATTTT
66 CCGAATTTCAATTTT
44705540 CCTCGTATACGAAAATGGCCATTTTTACCATTTTGTCCACAACTTGGTATTTTGTC-AATTTTAG
1 CCTCGTATACGAAAATGGCCATTTTTACCATTTTGTCCACAACTTGGTATTTT-TCTAATTTTAG
*
44705604 CCCGAATTTTAATTTT
65 CCCGAATTTCAATTTT
44705620 CCT
1 CCT
44705623 TACTCTATCA
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
80 77 0.97
81 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.43
Consensus pattern (80 bp):
CCTCGTATACGAAAATGGCCATTTTTACCATTTTGTCCACAACTTGGTATTTTTCTAATTTTAGC
CCGAATTTCAATTTT
Found at i:44706744 original size:22 final size:23
Alignment explanation
Indices: 44706717--44706761 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
44706707 GGGTATCTAC
44706717 AAATCAAATC-TCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
*
44706739 AAATCATATCTTCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
44706762 TATCATATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.47, C:0.18, G:0.04, T:0.31
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTACA
Found at i:44706765 original size:17 final size:17
Alignment explanation
Indices: 44706743--44706793 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 17
44706733 ATTACAAAAT
44706743 CATATCTTCTAAGATTA
1 CATATCTTCTAAGATTA
*
44706760 CATATCATATCTAAGATTG
1 CATATC-T-TCTAAGATTA
*
44706779 CATATCTTCGAAGAT
1 CATATCTTCTAAGAT
44706794 CATGTTTCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 13 0.43
18 2 0.07
19 15 0.50
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (17 bp):
CATATCTTCTAAGATTA
Found at i:44706766 original size:22 final size:22
Alignment explanation
Indices: 44706714--44706771 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 22
44706704 AAAGGGTATC
*
44706714 TACAAATCAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
44706735 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
44706758 TACATATCATATCT
1 TACAAATCATATCT
44706772 AAGATTGCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 3 0.09
22 19 0.58
23 11 0.33
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:44706774 original size:19 final size:20
Alignment explanation
Indices: 44706727--44706784 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 20
44706717 AAATCAAATC
*
44706727 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-ATATCATA--T
44706750 TCTAAGATTACATATCATA-
1 TCTAAGATTACATATCATAT
*
44706769 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
44706785 TTCGAAGATC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.45
22 7 0.21
23 11 0.33
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (20 bp):
TCTAAGATTACATATCATAT
Found at i:44711865 original size:22 final size:23
Alignment explanation
Indices: 44711838--44711882 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
44711828 GGGTATCTAC
*
44711838 AAATCAAATC-TCTAAGATTACA
1 AAATCAAATCTTCTAAAATTACA
*
44711860 AAATCATATCTTCTAAAATTACA
1 AAATCAAATCTTCTAAAATTACA
44711883 TATCATATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.49, C:0.18, G:0.02, T:0.31
Consensus pattern (23 bp):
AAATCAAATCTTCTAAAATTACA
Found at i:44711886 original size:17 final size:17
Alignment explanation
Indices: 44711864--44711908 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 17
44711854 ATTACAAAAT
44711864 CATATCTTCTAAAATTA
1 CATATCTTCTAAAATTA
* *
44711881 CATATCATATCTAAGATTG
1 CATATC-T-TCTAAAATTA
44711900 CATATCTTC
1 CATATCTTC
44711909 GAAGATCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 8 0.33
18 2 0.08
19 14 0.58
ACGTcount: A:0.36, C:0.20, G:0.04, T:0.40
Consensus pattern (17 bp):
CATATCTTCTAAAATTA
Found at i:44711887 original size:22 final size:22
Alignment explanation
Indices: 44711835--44711892 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
44711825 AAAGGGTATC
* *
44711835 TACAAATCAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAAAT
44711856 TACAAAATCATATCTTCTAAAAT
1 TAC-AAATCATATCTTCTAAAAT
*
44711879 TACATATCATATCT
1 TACAAATCATATCT
44711893 AAGATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 19 0.59
23 10 0.31
ACGTcount: A:0.45, C:0.19, G:0.02, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAAAT
Found at i:44714395 original size:15 final size:13
Alignment explanation
Indices: 44714367--44714400 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 13
44714357 TATAAAAATA
44714367 TAATATTTTAATT
1 TAATATTTTAATT
44714380 TAATATTTAATAATT
1 TAATATTT--TAATT
44714395 TAATAT
1 TAATAT
44714401 AATTTTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.42
15 11 0.58
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TAATATTTTAATT
Found at i:44719974 original size:10 final size:10
Alignment explanation
Indices: 44719953--44719987 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
44719943 GTCTTTTTCA
44719953 TAAAAAATTTT
1 TAAAAAA-TTT
44719964 TAAAAAATTT
1 TAAAAAATTT
*
44719974 TAAAAACTTT
1 TAAAAAATTT
44719984 TAAA
1 TAAA
44719988 TCATTTTCAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 16 0.70
11 7 0.30
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (10 bp):
TAAAAAATTT
Found at i:44724950 original size:45 final size:45
Alignment explanation
Indices: 44724901--44725164 Score: 420
Period size: 45 Copynumber: 5.9 Consensus size: 45
44724891 TCGGCCATGG
* * * * *
44724901 TGCTTCCTCAATTTGTTCCTTAAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
*
44724946 TGCTTCCTTAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
*
44724991 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
44725036 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
44725081 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
* * * **
44725126 TGCTTCCTTAATTTGTTCCACAAATTATGCATGATGTTG
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTG
44725165 TCCACCTCTT
Statistics
Matches: 205, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 205 1.00
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.39
Consensus pattern (45 bp):
TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
Found at i:44731365 original size:45 final size:45
Alignment explanation
Indices: 44731316--44731579 Score: 420
Period size: 45 Copynumber: 5.9 Consensus size: 45
44731306 TCGGCCATGG
* * * * *
44731316 TGCTTCCTCAATTTGTTCCTTAAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
*
44731361 TGCTTCCTTAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
*
44731406 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
44731451 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
44731496 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
* * * **
44731541 TGCTTCCTTAATTTGTTCCACAAATTATGCATGATGTTG
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTG
44731580 TCCACCTCTT
Statistics
Matches: 205, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 205 1.00
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.39
Consensus pattern (45 bp):
TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
Found at i:44732628 original size:41 final size:40
Alignment explanation
Indices: 44732555--44732659 Score: 113
Period size: 41 Copynumber: 2.6 Consensus size: 40
44732545 AAAAGTTGTA
** * * * *
44732555 CATTAGCGGCGCTAGTAAGAAAACGCCGCTAAAGGTTAGAG
1 CATTAGCGGCGCTTTTGAGAAAATGCCACTAAA-GATAGAG
*
44732596 CATTAGCGGCGCTTTTTGA-AAAATGCCACTAAAGATCGAG
1 CATTAGCGGCGC-TTTTGAGAAAATGCCACTAAAGATAGAG
*
44732636 CATTAGTGGCGCTTTTGAGAAAAT
1 CATTAGCGGCGCTTTTGAGAAAAT
44732660 ACCGCAAAAG
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
39 6 0.11
40 21 0.39
41 24 0.44
42 3 0.06
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (40 bp):
CATTAGCGGCGCTTTTGAGAAAATGCCACTAAAGATAGAG
Found at i:44732637 original size:40 final size:40
Alignment explanation
Indices: 44732593--44732783 Score: 143
Period size: 40 Copynumber: 4.5 Consensus size: 40
44732583 CTAAAGGTTA
* *
44732593 GAGCATTAGCGGCGCTTTTTGAAAAATGCCACTAAAGATC
1 GAGCATTAGCGGCGCTTTTTGAAAAATACCGCTAAAGATC
* *
44732633 GAGCATTAGTGGCGC-TTTTGAGAAAATACCGCAAAAGAGTTC
1 GAGCATTAGCGGCGCTTTTTGA-AAAATACCGCTAAAGA--TC
* * *
44732675 AGCAAAACCATGGAATTAGTGGCGCTTTTT-AAAAAAAGCCGCTAAAGATC
1 -G-------A--GCATTAGCGGCGCTTTTTGAAAAATA-CCGCTAAAGATC
* * * *
44732725 GAGCATTAGCGGTGCTTTTTGAAAAACACCGTTAAAGATT
1 GAGCATTAGCGGCGCTTTTTGAAAAATACCGCTAAAGATC
44732765 GAGCATTAGCGGCGCTTTT
1 GAGCATTAGCGGCGCTTTT
44732784 CAGAAAACGC
Statistics
Matches: 121, Mismatches: 14, Indels: 32
0.72 0.08 0.19
Matches are distributed among these distances:
39 6 0.05
40 70 0.58
41 6 0.05
42 3 0.02
43 1 0.01
49 1 0.01
50 3 0.02
51 5 0.04
52 22 0.18
53 4 0.03
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.26
Consensus pattern (40 bp):
GAGCATTAGCGGCGCTTTTTGAAAAATACCGCTAAAGATC
Found at i:44732791 original size:40 final size:40
Alignment explanation
Indices: 44732689--44732796 Score: 114
Period size: 40 Copynumber: 2.7 Consensus size: 40
44732679 AAACCATGGA
* *
44732689 ATTAGTGGCGCTTTTTA-AAAAAAGCCGCTAAAGATCGAGC
1 ATTAGCGGCGC-TTTTAGAAAACAGCCGCTAAAGATCGAGC
* * * *
44732729 ATTAGCGGTGCTTTTTGAAAAACA-CCGTTAAAGATTGAGC
1 ATTAGCGGCGCTTTTAG-AAAACAGCCGCTAAAGATCGAGC
44732769 ATTAGCGGCGCTTTTCAGAAAAC-GCCGC
1 ATTAGCGGCGCTTTT-AGAAAACAGCCGC
44732797 AAAACGCCAT
Statistics
Matches: 55, Mismatches: 9, Indels: 8
0.76 0.12 0.11
Matches are distributed among these distances:
39 4 0.07
40 45 0.82
41 6 0.11
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.26
Consensus pattern (40 bp):
ATTAGCGGCGCTTTTAGAAAACAGCCGCTAAAGATCGAGC
Found at i:44733450 original size:49 final size:49
Alignment explanation
Indices: 44733378--44733526 Score: 280
Period size: 49 Copynumber: 3.0 Consensus size: 49
44733368 GTTCTTGTAA
44733378 ATTATTAACACAATTATTGATATAACATTATTTTATATTTATATATTGC
1 ATTATTAACACAATTATTGATATAACATTATTTTATATTTATATATTGC
44733427 ATTATTAACACAATTATTGATATAACATTATTTTATATTTATATATTGC
1 ATTATTAACACAATTATTGATATAACATTATTTTATATTTATATATTGC
* *
44733476 ATTATTAACACAATTATTGATGTAACATCATTTTATATTTATATATTGC
1 ATTATTAACACAATTATTGATATAACATTATTTTATATTTATATATTGC
44733525 AT
1 AT
44733527 ACATAAATAT
Statistics
Matches: 98, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 98 1.00
ACGTcount: A:0.38, C:0.09, G:0.05, T:0.48
Consensus pattern (49 bp):
ATTATTAACACAATTATTGATATAACATTATTTTATATTTATATATTGC
Found at i:44733625 original size:30 final size:31
Alignment explanation
Indices: 44733586--44733654 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 31
44733576 TTTAAATGTG
* *
44733586 TATAATTAAATCAAAATTA-AGTTTCAACTA
1 TATAATTAAACCAAAATTAGAATTTCAACTA
* * *
44733616 TATATTTAAACCATAATTAGAATTTCAAGTA
1 TATAATTAAACCAAAATTAGAATTTCAACTA
*
44733647 TACAATTA
1 TATAATTA
44733655 CATATTAAAC
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
30 16 0.52
31 15 0.48
ACGTcount: A:0.48, C:0.10, G:0.04, T:0.38
Consensus pattern (31 bp):
TATAATTAAACCAAAATTAGAATTTCAACTA
Found at i:44734115 original size:7 final size:7
Alignment explanation
Indices: 44734103--44734165 Score: 99
Period size: 7 Copynumber: 8.7 Consensus size: 7
44734093 AAATATTCAA
44734103 AAAAATT
1 AAAAATT
44734110 AAAAATTT
1 AAAAA-TT
*
44734118 AAAAATAA
1 AAAAAT-T
44734126 AAAAATT
1 AAAAATT
44734133 AAAAATT
1 AAAAATT
44734140 AAAAATT
1 AAAAATT
44734147 AAAAATT
1 AAAAATT
44734154 AAAAATT
1 AAAAATT
44734161 AAAAA
1 AAAAA
44734166 CTTGAAATTT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
7 39 0.75
8 13 0.25
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (7 bp):
AAAAATT
Found at i:44734118 original size:36 final size:32
Alignment explanation
Indices: 44734077--44734159 Score: 102
Period size: 29 Copynumber: 2.6 Consensus size: 32
44734067 TTTATATGTT
44734077 AATTTAAAAATGATAAAAATATTCAAAAAAATTAAA
1 AATTTAAAAAT-ATAAAAATATT---AAAAATTAAA
44734113 AATTTAAAAATA-AAAAA-ATTAAAAATTAAA
1 AATTTAAAAATATAAAAATATTAAAAATTAAA
44734143 AA-TTAAAAAT-TAAAAAT
1 AATTTAAAAATATAAAAAT
44734160 TAAAAACTTG
Statistics
Matches: 45, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
29 13 0.29
30 12 0.27
33 3 0.07
34 5 0.11
35 1 0.02
36 11 0.24
ACGTcount: A:0.70, C:0.01, G:0.01, T:0.28
Consensus pattern (32 bp):
AATTTAAAAATATAAAAATATTAAAAATTAAA
Found at i:44734243 original size:16 final size:16
Alignment explanation
Indices: 44734224--44734254 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
44734214 ATCAATATTC
44734224 AAAATTTCAAAAAATA
1 AAAATTTCAAAAAATA
44734240 AAAATTTCAAAAAAT
1 AAAATTTCAAAAAAT
44734255 GATAATCTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAATTTCAAAAAATA
Found at i:44736940 original size:19 final size:19
Alignment explanation
Indices: 44736916--44736958 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
44736906 TGCATTATAG
*
44736916 ATTTTAGTA-TTAGTTTAAA
1 ATTTTAGTATTTA-ATTAAA
44736935 ATTTTAGTATTTAATTAAA
1 ATTTTAGTATTTAATTAAA
44736954 ATTTT
1 ATTTT
44736959 TAAAAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.86
20 3 0.14
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (19 bp):
ATTTTAGTATTTAATTAAA
Found at i:44738786 original size:42 final size:42
Alignment explanation
Indices: 44738718--44738799 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
44738708 TTATAAATGT
* * *
44738718 CGTTTTTTAGCGGTGTTTGTGAGAAAAGCGCCGCTAAAGGTC
1 CGTTTTATAGCGGCGGTTGTGAGAAAAGCGCCGCTAAAGGTC
44738760 CGTTTTATAGCGGCGGTTGT-AGGAAAAGCGCCGCTAAAGG
1 CGTTTTATAGCGGCGGTTGTGA-GAAAAGCGCCGCTAAAGG
44738800 CCATGAGTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 1 0.03
42 35 0.97
ACGTcount: A:0.23, C:0.17, G:0.33, T:0.27
Consensus pattern (42 bp):
CGTTTTATAGCGGCGGTTGTGAGAAAAGCGCCGCTAAAGGTC
Found at i:44738891 original size:43 final size:43
Alignment explanation
Indices: 44738789--44738897 Score: 148
Period size: 43 Copynumber: 2.5 Consensus size: 43
44738779 TAGGAAAAGC
* * *
44738789 GCCGCTAAAGGCCATGAGTTTTAGCGGTGCTTTTCTCACAAAT
1 GCCGCTAAAGGCCATGATTTTTAGCGGCGCTTTTCCCACAAAT
44738832 GCCGCTAAAGGCCATGATTTTTAGCGGCG-TTTTCCCCACAAAT
1 GCCGCTAAAGGCCATGATTTTTAGCGGCGCTTTT-CCCACAAAT
* *
44738875 GCCGCTAAAAGTCATGATCTTTT
1 GCCGCTAAAGGCCATGAT-TTTT
44738898 GTGGAGTTTT
Statistics
Matches: 59, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
42 4 0.07
43 51 0.86
44 4 0.07
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (43 bp):
GCCGCTAAAGGCCATGATTTTTAGCGGCGCTTTTCCCACAAAT
Found at i:44744050 original size:17 final size:16
Alignment explanation
Indices: 44744028--44744059 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
44744018 CAGGCCGTGG
44744028 GCGTGTAGGCCACACAA
1 GCGTGTAGGCC-CACAA
44744045 GCGTGTAGGCCCACA
1 GCGTGTAGGCCCACA
44744060 CGGGTATGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.25, C:0.31, G:0.31, T:0.12
Consensus pattern (16 bp):
GCGTGTAGGCCCACAA
Found at i:44748229 original size:15 final size:16
Alignment explanation
Indices: 44748209--44748238 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
44748199 AAGATCTTAT
44748209 AATCATAA-CTTACTC
1 AATCATAACCTTACTC
44748224 AATCATAACCTTACT
1 AATCATAACCTTACT
44748239 GAGGGTTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33
Consensus pattern (16 bp):
AATCATAACCTTACTC
Found at i:44749652 original size:46 final size:46
Alignment explanation
Indices: 44749602--44749774 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
44749592 TGGTTGAGCA
*
44749602 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
44749648 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
44749695 TCCGAACTCGTTGAGTTGAGTCCGAATTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
44749741 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
44749775 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:44749758 original size:93 final size:93
Alignment explanation
Indices: 44749599--44749769 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
44749589 GGATGGTTGA
* * *
44749599 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
44749664 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
44749692 GCATCCGAACTCGTTGAGTTGAGTCCGAATTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
44749757 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
44749770 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:44757001 original size:46 final size:46
Alignment explanation
Indices: 44756948--44757073 Score: 198
Period size: 46 Copynumber: 2.7 Consensus size: 46
44756938 TGGTTGAGCA
*
44756948 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
44756994 TCCGAACTCGTTGAGTTGAGTCCGAGTTAATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
44757040 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
44757074 GGGGCGGGTT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:44774840 original size:46 final size:46
Alignment explanation
Indices: 44774790--44774915 Score: 198
Period size: 46 Copynumber: 2.7 Consensus size: 46
44774780 TGGTTGAGCA
*
44774790 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
44774836 TCCGAACTCGTTGAGTTGAGTCCGAGTTAATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
44774882 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
44774916 GGGGCGGGTT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:44784021 original size:40 final size:40
Alignment explanation
Indices: 44783966--44784109 Score: 229
Period size: 40 Copynumber: 3.6 Consensus size: 40
44783956 TATTCGAATG
44783966 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
44784006 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
44784046 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
44784086 ATATCC-GGCTAAATCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCA
44784110 CTTGGGTTTG
Statistics
Matches: 97, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
39 16 0.16
40 78 0.80
41 3 0.03
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:44785717 original size:42 final size:42
Alignment explanation
Indices: 44785558--44785717 Score: 157
Period size: 41 Copynumber: 3.8 Consensus size: 42
44785548 TACCATACCA
* * * *
44785558 ATGCTATATCCCAAATATGGTCTT--ACATGGATCTCGTATTG
1 ATGCCATATCCCAAATATGGTCTTACACATAG-TCTCATATAG
* ** * * *
44785599 ATGCCAATAGCCCAGCTATGGTCTTACACAAAGTCTTATATCG
1 ATGCC-ATATCCCAAATATGGTCTTACACATAGTCTCATATAG
*
44785642 ATGCCATAT-CCAGATATGGTCTTACACGA-AGTCTCATATAG
1 ATGCCATATCCCAAATATGGTCTTACAC-ATAGTCTCATATAG
*
44785683 ATGCCATATCCTAAATATGGTCTTACACATAGTCT
1 ATGCCATATCCCAAATATGGTCTTACACATAGTCT
44785718 TAGTAACCCG
Statistics
Matches: 98, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
41 41 0.42
42 41 0.42
43 12 0.12
44 4 0.04
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAAATATGGTCTTACACATAGTCTCATATAG
Found at i:44788881 original size:74 final size:75
Alignment explanation
Indices: 44788759--44788903 Score: 274
Period size: 74 Copynumber: 1.9 Consensus size: 75
44788749 GAAAAGAAAT
44788759 TTTTCATCAATACCCAAATAAAAAATAAAAAGAATCCCCAATTTCTTATAAACCCCAAAATAAAT
1 TTTTCATCAATACCCAAATAAAAAATAAAAAGAATCCCCAATTTCTTATAAACCCCAAAATAAAT
44788824 CGGCTATTTC
66 CGGCTATTTC
*
44788834 TTTTCATCAATACCCAAAT-AAAAATAAAAAGAATCCCCAATTTCTTATGAACCCCAAAATAAAT
1 TTTTCATCAATACCCAAATAAAAAATAAAAAGAATCCCCAATTTCTTATAAACCCCAAAATAAAT
44788898 CGGCTA
66 CGGCTA
44788904 AATATGCTTA
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
74 50 0.72
75 19 0.28
ACGTcount: A:0.46, C:0.23, G:0.05, T:0.27
Consensus pattern (75 bp):
TTTTCATCAATACCCAAATAAAAAATAAAAAGAATCCCCAATTTCTTATAAACCCCAAAATAAAT
CGGCTATTTC
Found at i:44790946 original size:23 final size:24
Alignment explanation
Indices: 44790912--44790970 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
44790902 ATATATATAG
*
44790912 AAAATCAT-AAAAA-TATTATTAAA
1 AAAAT-ATAAAAAATTATAATTAAA
* *
44790935 AAAATTTAAAAAATTATAATTGAA
1 AAAATATAAAAAATTATAATTAAA
44790959 AAAATATAAAAA
1 AAAATATAAAAA
44790971 TATAGAATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
22 1 0.03
23 10 0.33
24 19 0.63
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (24 bp):
AAAATATAAAAAATTATAATTAAA
Found at i:44790970 original size:32 final size:31
Alignment explanation
Indices: 44790934--44790994 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
44790924 ATATTATTAA
* *
44790934 AAAAATTTAAAAAATTATAATTGAAAAAATAT
1 AAAAATATAAAAAATTATAAAT-AAAAAATAT
* *
44790966 AAAAATATAGAATATTATAAATAAAAAAT
1 AAAAATATAAAAAATTATAAATAAAAAAT
44790995 TTTTAAATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 7 0.28
32 18 0.72
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (31 bp):
AAAAATATAAAAAATTATAAATAAAAAATAT
Found at i:44790971 original size:23 final size:23
Alignment explanation
Indices: 44790912--44790971 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
44790902 ATATATATAG
*
44790912 AAAATCATAAAAA-TATTATTAAA
1 AAAAT-ATAAAAATTATAATTAAA
* *
44790935 AAAATTTAAAAAATTATAATTGAA
1 AAAATAT-AAAAATTATAATTAAA
44790959 AAAATATAAAAAT
1 AAAATATAAAAAT
44790972 ATAGAATATT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
22 1 0.03
23 16 0.52
24 14 0.45
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (23 bp):
AAAATATAAAAATTATAATTAAA
Found at i:44791067 original size:35 final size:35
Alignment explanation
Indices: 44791018--44791087 Score: 92
Period size: 35 Copynumber: 2.0 Consensus size: 35
44791008 AAAGTTTCAA
44791018 AAAATTATTAAAATTAT-T-AACATAATAAAAAAATT
1 AAAATTATTAAAATTATGTGAA-A-AATAAAAAAATT
44791053 AAAATTA-TATAAATTATGTGAAAAATAAAAAAATT
1 AAAATTATTA-AAATTATGTGAAAAATAAAAAAATT
44791088 TTAAAAGTAC
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
34 2 0.06
35 26 0.81
36 2 0.06
37 2 0.06
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (35 bp):
AAAATTATTAAAATTATGTGAAAAATAAAAAAATT
Found at i:44791211 original size:26 final size:25
Alignment explanation
Indices: 44791182--44791237 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 25
44791172 AAAGTTATTC
44791182 AAAAATTATATAAATTAGAAAAATAT
1 AAAAATTATATAAATT-GAAAAATAT
* *
44791208 AAAACTTATATAAATTTAAAAATAT
1 AAAAATTATATAAATTGAAAAATAT
44791233 AAAAA
1 AAAAA
44791238 AATTTACAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 12 0.44
26 15 0.56
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (25 bp):
AAAAATTATATAAATTGAAAAATAT
Found at i:44791548 original size:29 final size:30
Alignment explanation
Indices: 44791516--44791591 Score: 77
Period size: 29 Copynumber: 2.6 Consensus size: 30
44791506 ATTCTTAATT
*
44791516 TATTTTTATAATTTTTATT-CTTCTTA-TAA
1 TATTTTTATAATTTTTATTAATT-TTATTAA
* *
44791545 TATTTTT-TAAATTCTATTAATTTTATTAA
1 TATTTTTATAATTTTTATTAATTTTATTAA
*
44791574 TAATTTTATATATTTTTA
1 TATTTTTATA-ATTTTTA
44791592 AAAATAAATA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
28 12 0.32
29 18 0.49
30 2 0.05
31 5 0.14
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (30 bp):
TATTTTTATAATTTTTATTAATTTTATTAA
Found at i:44791802 original size:30 final size:30
Alignment explanation
Indices: 44791754--44791838 Score: 89
Period size: 30 Copynumber: 2.8 Consensus size: 30
44791744 TTTTTTTTAT
44791754 AAATTTTTAAATTATTTTTAAAATATATATTA
1 AAATTTTT-AA-TATTTTTAAAATATATATTA
** * * * *
44791786 TGATTTTTTATATTTTTTAAATATTTTTTA
1 AAATTTTTAATATTTTTAAAATATATATTA
*
44791816 AAATTTTTAATGTTTTTAAAATA
1 AAATTTTTAATATTTTTAAAATA
44791839 AAAAATACTC
Statistics
Matches: 42, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
30 35 0.83
31 1 0.02
32 6 0.14
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (30 bp):
AAATTTTTAATATTTTTAAAATATATATTA
Found at i:44791809 original size:11 final size:11
Alignment explanation
Indices: 44791757--44791823 Score: 54
Period size: 11 Copynumber: 6.4 Consensus size: 11
44791747 TTTTTATAAA
44791757 TTTTTAAATTAT
1 TTTTTAAA-TAT
*
44791769 TTTTAAAATAT
1 TTTTTAAATAT
* *
44791780 ATATT--ATGAT
1 TTTTTAAAT-AT
44791790 TTTTT--ATAT
1 TTTTTAAATAT
44791799 TTTTTAAATAT
1 TTTTTAAATAT
44791810 TTTTTAAA-AT
1 TTTTTAAATAT
44791820 TTTT
1 TTTT
44791824 AATGTTTTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
9 9 0.20
10 13 0.28
11 17 0.37
12 7 0.15
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.64
Consensus pattern (11 bp):
TTTTTAAATAT
Found at i:44796728 original size:109 final size:109
Alignment explanation
Indices: 44796537--44796743 Score: 292
Period size: 109 Copynumber: 1.9 Consensus size: 109
44796527 AGTAGTAAAC
* * *
44796537 TCAACTTCACATGTCGGTGAATTCATCAAGCTCGTTTCAATAGGATGACCCAAATCCTGGAATAT
1 TCAACCTCACATGTCAGTGAATTCATCAAGCTCGTCTCAATAGGATGACCCAAATCCTGGAATAT
44796602 GAATTCATTAAAAGTGAGAACACAACCTTATGCATGTACATCAT
66 GAATTCATTAAAAGTGAGAACACAACCTTATGCATGTACATCAT
* * *
44796646 TCAACCTCACATGTTAGTGAATTCATCAAG-TCCGTCTCAATAGGACT-ACCCAAATCTTGGGAT
1 TCAACCTCACATGTCAGTGAATTCATCAAGCT-CGTCTCAATAGGA-TGACCCAAATCCTGGAAT
* * * *
44796709 ATTAATTTATTAAGAGTGAGAACTCAACCTTATGC
64 ATGAATTCATTAAAAGTGAGAACACAACCTTATGC
44796744 TTATATCGTT
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
108 1 0.01
109 84 0.98
110 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.29
Consensus pattern (109 bp):
TCAACCTCACATGTCAGTGAATTCATCAAGCTCGTCTCAATAGGATGACCCAAATCCTGGAATAT
GAATTCATTAAAAGTGAGAACACAACCTTATGCATGTACATCAT
Found at i:44820521 original size:24 final size:24
Alignment explanation
Indices: 44820476--44820521 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
44820466 TATATACCGA
*
44820476 TCACAAAAGTCTTAAATATTGATG
1 TCACAAAAGACTTAAATATTGATG
*
44820500 TCACAAAAAGACTTGAAT-TTGA
1 TCAC-AAAAGACTTAAATATTGA
44820522 GACAGCGTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 8 0.42
25 11 0.58
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.30
Consensus pattern (24 bp):
TCACAAAAGACTTAAATATTGATG
Found at i:44823493 original size:46 final size:46
Alignment explanation
Indices: 44823443--44823568 Score: 198
Period size: 46 Copynumber: 2.7 Consensus size: 46
44823433 TGGTTGAGCA
*
44823443 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
44823489 TCCGAACTCGTTGAGTTGAGTCCGAGTTAATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
44823535 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
44823569 GGGGCGGGTT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:44832669 original size:40 final size:40
Alignment explanation
Indices: 44832614--44832757 Score: 229
Period size: 40 Copynumber: 3.6 Consensus size: 40
44832604 TATTCGAATG
44832614 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
44832654 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
44832694 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
44832734 ATATCC-GGCTAAATCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCA
44832758 CTTGGGTTTG
Statistics
Matches: 97, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
39 16 0.16
40 78 0.80
41 3 0.03
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:44834319 original size:42 final size:42
Alignment explanation
Indices: 44834249--44834371 Score: 165
Period size: 42 Copynumber: 2.9 Consensus size: 42
44834239 ATCTCGTATT
* * *
44834249 GATGCCAATAGCCCAGCTATGGTCTTACACAAAGTCTTATATC
1 GATGCC-ATATCCCAGATATGGTCTTACACAAAGTCTTATATA
* *
44834292 GATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATA
1 GATGCCATATCCCAGATATGGTCTTACACAAAGTCTTATATA
* * *
44834334 GATGCCATATCCTAAATATGGTCTTACACATAGTCTTA
1 GATGCCATATCCCAGATATGGTCTTACACAAAGTCTTA
44834372 GTAACCCGAA
Statistics
Matches: 70, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
42 64 0.91
43 6 0.09
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (42 bp):
GATGCCATATCCCAGATATGGTCTTACACAAAGTCTTATATA
Found at i:44837538 original size:75 final size:75
Alignment explanation
Indices: 44837415--44837560 Score: 283
Period size: 75 Copynumber: 1.9 Consensus size: 75
44837405 GAAAAGAAAT
44837415 TTTTCATCAATACCCAAATAAAAAATAAAAAGAATCCCCAATTTCTTATAAACCCCAAAATAAAT
1 TTTTCATCAATACCCAAATAAAAAATAAAAAGAATCCCCAATTTCTTATAAACCCCAAAATAAAT
44837480 CGGCTATTTC
66 CGGCTATTTC
*
44837490 TTTTCATCAATACCCAAATAAAAAATAAAAAGAATCCCCAATTTCTTATGAACCCCAAAATAAAT
1 TTTTCATCAATACCCAAATAAAAAATAAAAAGAATCCCCAATTTCTTATAAACCCCAAAATAAAT
44837555 CGGCTA
66 CGGCTA
44837561 AATATGCTTA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 70 1.00
ACGTcount: A:0.46, C:0.23, G:0.05, T:0.27
Consensus pattern (75 bp):
TTTTCATCAATACCCAAATAAAAAATAAAAAGAATCCCCAATTTCTTATAAACCCCAAAATAAAT
CGGCTATTTC
Found at i:44839602 original size:10 final size:10
Alignment explanation
Indices: 44839519--44839602 Score: 53
Period size: 10 Copynumber: 8.1 Consensus size: 10
44839509 TTTTATATTT
*
44839519 AAAATTATTA
1 AAAATTATAA
* *
44839529 AAAGTTATTTA
1 AAAATTA-TAA
* *
44839540 AAAATAATTA
1 AAAATTATAA
* *
44839550 AATATATATAG
1 AAAAT-TATAA
*
44839561 AAAATCATAA
1 AAAATTATAA
44839571 AAATATTATTAA
1 AAA-ATTA-TAA
44839583 AAAATT-TAA
1 AAAATTATAA
44839592 AAAATTATAA
1 AAAATTATAA
44839602 A
1 A
44839603 TTGAAAAAAT
Statistics
Matches: 58, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
9 9 0.16
10 23 0.40
11 20 0.34
12 6 0.10
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.35
Consensus pattern (10 bp):
AAAATTATAA
Found at i:44839615 original size:15 final size:16
Alignment explanation
Indices: 44839584--44839617 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
44839574 TATTATTAAA
*
44839584 AAATTTAAAAAATTAT
1 AAATTGAAAAAATTAT
44839600 AAATTGAAAAAA-TAT
1 AAATTGAAAAAATTAT
44839615 AAA
1 AAA
44839618 AATATAGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (16 bp):
AAATTGAAAAAATTAT
Found at i:44839880 original size:25 final size:26
Alignment explanation
Indices: 44839833--44839889 Score: 80
Period size: 27 Copynumber: 2.2 Consensus size: 26
44839823 AAAGTTATTC
44839833 AAAAATTATATAAATTAGAAAAAATAT
1 AAAAATTATATAAATTA-AAAAAATAT
* *
44839860 AAAACTTATATAAATT-TAAAAATAT
1 AAAAATTATATAAATTAAAAAAATAT
44839885 AAAAA
1 AAAAA
44839890 AATTTACAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 12 0.44
27 15 0.56
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (26 bp):
AAAAATTATATAAATTAAAAAAATAT
Found at i:44840472 original size:27 final size:29
Alignment explanation
Indices: 44840413--44840475 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
44840403 TTTAAATTAT
** *
44840413 TTTTAAATATATATTATGATTTTTATATT
1 TTTTAAATATATATTAAAATTTTTATATG
*
44840442 TTTTAAATAT-TTTTAAAATTTTTA-ATG
1 TTTTAAATATATATTAAAATTTTTATATG
44840469 TTTTAAA
1 TTTTAAA
44840476 ATAAAAAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 9 0.30
28 11 0.37
29 10 0.33
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (29 bp):
TTTTAAATATATATTAAAATTTTTATATG
Found at i:44850920 original size:19 final size:19
Alignment explanation
Indices: 44850893--44850931 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
44850883 TAACTGTGTG
44850893 TCCCCTGCACCTAAAATTT
1 TCCCCTGCACCTAAAATTT
*
44850912 TCCCTTGCACCTAAAATTT
1 TCCCCTGCACCTAAAATTT
44850931 T
1 T
44850932 AAGTTAGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.33, G:0.05, T:0.36
Consensus pattern (19 bp):
TCCCCTGCACCTAAAATTT
Found at i:44863742 original size:37 final size:37
Alignment explanation
Indices: 44863687--44863767 Score: 126
Period size: 37 Copynumber: 2.2 Consensus size: 37
44863677 TTCCAACTGA
* *
44863687 AACAGACTAGATGCTCATAAGAGCTAATCCACCCAAT
1 AACACACTAGATGCTCATAAGAGCCAATCCACCCAAT
**
44863724 AACACACTAGATGCTCATAAGAGCCAATCCACCTGAT
1 AACACACTAGATGCTCATAAGAGCCAATCCACCCAAT
44863761 AACACAC
1 AACACAC
44863768 CAATAGCTAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.41, C:0.30, G:0.12, T:0.17
Consensus pattern (37 bp):
AACACACTAGATGCTCATAAGAGCCAATCCACCCAAT
Found at i:44872551 original size:19 final size:20
Alignment explanation
Indices: 44872508--44872563 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
44872498 ATTGGGTGTT
44872508 GCCCATATTAACACAGTTAG
1 GCCCATATTAACACAGTTAG
* *
44872528 GCCCATTTTAATACAGTT-G
1 GCCCATATTAACACAGTTAG
* *
44872547 GCCCATAATAAAACAGT
1 GCCCATATTAACACAGT
44872564 CTCATATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (20 bp):
GCCCATATTAACACAGTTAG
Found at i:44874854 original size:3 final size:3
Alignment explanation
Indices: 44874846--44874870 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
44874836 ATTTAATTAC
44874846 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
44874871 TTCATAAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:44882574 original size:43 final size:43
Alignment explanation
Indices: 44882526--44882678 Score: 227
Period size: 43 Copynumber: 3.6 Consensus size: 43
44882516 CGGGCTACGG
* *
44882526 GCCTAGCAGGCTATAATGTCGGTGAGATAATATCAGGCTTCGG
1 GCCTAGCAGGCTATAATGCCGGTGAGATAATATCAGGCTTCGA
*
44882569 GCCTAGCAGGCTATAATGCCGGTGAGATAATATCGGGCTTCGA
1 GCCTAGCAGGCTATAATGCCGGTGAGATAATATCAGGCTTCGA
* * *
44882612 GCCTAGCAGGCTATAATGCCGGTGAAATGATATCAGGCTTCAA
1 GCCTAGCAGGCTATAATGCCGGTGAGATAATATCAGGCTTCGA
* *
44882655 GCCTAGCAGGCGA-AATGTCGGTGA
1 GCCTAGCAGGCTATAATGCCGGTGA
44882679 ATGAGTTTAG
Statistics
Matches: 101, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
42 10 0.10
43 91 0.90
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (43 bp):
GCCTAGCAGGCTATAATGCCGGTGAGATAATATCAGGCTTCGA
Found at i:44890752 original size:17 final size:19
Alignment explanation
Indices: 44890723--44890759 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
44890713 TTAGCATTCT
44890723 TACCAAGAGTTCAT-CTCA
1 TACCAAGAGTTCATGCTCA
44890741 TACCAA-AGTTCATGCTCA
1 TACCAAGAGTTCATGCTCA
44890759 T
1 T
44890760 GGGTTTTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.32, C:0.27, G:0.11, T:0.30
Consensus pattern (19 bp):
TACCAAGAGTTCATGCTCA
Found at i:44897339 original size:48 final size:47
Alignment explanation
Indices: 44897228--44897495 Score: 274
Period size: 48 Copynumber: 5.7 Consensus size: 47
44897218 CGATATGTGT
* ** *
44897228 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCC-ACA-ATATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATTA-A
* * *
44897274 GCCAGTGTAAGACATGTCTTGGACATGCATCGGCCTCGAGATATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATA-TTAA
*
44897322 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTAAGATATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATA-TTAA
* * * * *
44897370 GCCAGTGTAAGACATGTCAGGGACATGCATCGGCATTGAGACGA--GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGA-TATTAA
* * * **
44897416 GCTAGTGTAAGACATGTCTGGGACATGAATCAGCCTTGCGATAGACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATA-TTAA
* *
44897464 GCTAGTGTAAGACCTGTCTAGGACATGGCATC
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATC
44897496 ATCTTGTTGT
Statistics
Matches: 187, Mismatches: 27, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
45 1 0.01
46 68 0.36
47 1 0.01
48 110 0.59
49 7 0.04
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATTAA
Found at i:44897419 original size:94 final size:94
Alignment explanation
Indices: 44897228--44897495 Score: 280
Period size: 94 Copynumber: 2.8 Consensus size: 94
44897218 CGATATGTGT
*
44897228 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCC--ACAATATGAGAGCCAGTGTAAGACATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTACAATATGAGAGCCAGTGTAAGACATGT
** * *
44897291 CTTGGACATGCATCGGCCTCGAGATATTTAA
66 CAGGGACATGCATCGGCATCGAGAGA--TAA
*
44897322 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTA-AGATATTTA-AGCCAGTGTAAGACAT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTACA-ATA-TGAGAGCCAGTGTAAGACAT
* *
44897385 GTCAGGGACATGCATCGGCATTGAGACGA-GA
64 GTCAGGGACATGCATCGGCATCGAGA-GATAA
* * * * * * *
44897416 GCTAGTGTAAGACATGTCTGGGACATGAATCAGCCTTGCGATA-GACAAGCTAGTGTAAGACCTG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTACAATATGA-GAGCCAGTGTAAGACATG
44897480 TCTA-GGACATGGCATC
65 TC-AGGGACAT-GCATC
44897496 ATCTTGTTGT
Statistics
Matches: 149, Mismatches: 15, Indels: 19
0.81 0.08 0.10
Matches are distributed among these distances:
92 1 0.01
94 96 0.64
95 7 0.05
96 42 0.28
97 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTACAATATGAGAGCCAGTGTAAGACATGT
CAGGGACATGCATCGGCATCGAGAGATAA
Found at i:44897475 original size:142 final size:143
Alignment explanation
Indices: 44897231--44897495 Score: 354
Period size: 142 Copynumber: 1.9 Consensus size: 143
44897221 TATGTGTGCT
** * * *
44897231 AGTGTAAGACATGTTTGGGACATGCATCGGCCACAATATGAGAGCCAGTGTAAGACATGTCTTGG
1 AGTGTAAGACATGTCAGGGACATGCATCGGCCACAAGACGAGAGCCAGTGTAAGACATGTCTGGG
* * *** *
44897296 ACATGCATCGGCCTCGAGATATTTAAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTTA
66 ACATGAATCAGCCTCGAGATAGACAAGCTAGTGTAAGACATGTCTAGGACATGGCATCGGCCTTA
44897360 AGATATTTAAGCC
131 AGATATTTAAGCC
** *
44897373 AGTGTAAGACATGTCAGGGACATGCATCGG-CATTGAGACGAGAGCTAGTGTAAGACATGTCTGG
1 AGTGTAAGACATGTCAGGGACATGCATCGGCCA-CAAGACGAGAGCCAGTGTAAGACATGTCTGG
* * *
44897437 GACATGAATCAGCCTTGCGATAGACAAGCTAGTGTAAGACCTGTCTAGGACATGGCATC
65 GACATGAATCAGCCTCGAGATAGACAAGCTAGTGTAAGACATGTCTAGGACATGGCATC
44897496 ATCTTGTTGT
Statistics
Matches: 104, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
141 2 0.02
142 97 0.93
143 5 0.05
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (143 bp):
AGTGTAAGACATGTCAGGGACATGCATCGGCCACAAGACGAGAGCCAGTGTAAGACATGTCTGGG
ACATGAATCAGCCTCGAGATAGACAAGCTAGTGTAAGACATGTCTAGGACATGGCATCGGCCTTA
AGATATTTAAGCC
Found at i:44904378 original size:17 final size:19
Alignment explanation
Indices: 44904349--44904385 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
44904339 TTAGCATTCT
44904349 TACCAAGAGTTCAT-CTCA
1 TACCAAGAGTTCATACTCA
44904367 TACCAA-AGTTCATACTCA
1 TACCAAGAGTTCATACTCA
44904385 T
1 T
44904386 GGGTTTTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.30
Consensus pattern (19 bp):
TACCAAGAGTTCATACTCA
Found at i:44907192 original size:47 final size:47
Alignment explanation
Indices: 44907138--44907331 Score: 262
Period size: 47 Copynumber: 4.1 Consensus size: 47
44907128 TTAGGATTTT
** * *
44907138 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
44907185 ATGTGATGAATGTGAACATGCATATAGGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
44907232 ATGTGATGAATGTGAGCCTGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
44907279 ATGTGGTGAATATGAATATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
44907326 ATGTGA
1 ATGTGA
44907332 AATATGTATG
Statistics
Matches: 128, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 128 1.00
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:44907364 original size:48 final size:48
Alignment explanation
Indices: 44907301--44907483 Score: 296
Period size: 48 Copynumber: 3.8 Consensus size: 48
44907291 TGAATATGCA
44907301 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
44907349 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
44907397 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATGTATGAGATATG
* *
44907445 TATATGTGGTAAAGCCGAATGGCTAGTGTAAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
44907484 GGCGATGTGC
Statistics
Matches: 123, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
47 1 0.01
48 121 0.98
49 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:44907746 original size:36 final size:37
Alignment explanation
Indices: 44907629--44907773 Score: 229
Period size: 37 Copynumber: 3.9 Consensus size: 37
44907619 GGAAATATAT
44907629 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
* * *
44907666 TCCGGGTAAGACCCGATGATTACATGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
* *
44907703 TCCGGGTAAGACCCGATGACTACGTGTGGATA-TTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
*
44907739 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
44907774 CGTCTGAGCT
Statistics
Matches: 98, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
36 33 0.34
37 65 0.66
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
Found at i:44909447 original size:40 final size:40
Alignment explanation
Indices: 44909045--44909433 Score: 562
Period size: 40 Copynumber: 9.7 Consensus size: 40
44909035 GAGAATTGAG
* * *
44909045 AGTGATATATCCGGGCTAAGTCTCGAAGGGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
44909085 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
44909125 AGTGATATATCCGGTCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
44909165 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
44909205 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
44909245 AGTGATGTATCCAGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
44909285 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
44909325 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
44909365 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
44909405 GGTGTTATATCCGGGCTAGGTCTCGAAGA
1 AGTGATATATCCGGGCTAAGTCCCGAAGA
44909434 ACAATCATGC
Statistics
Matches: 309, Mismatches: 40, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 309 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:44912726 original size:46 final size:46
Alignment explanation
Indices: 44912676--44912848 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
44912666 TGGTTGAGCA
*
44912676 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
44912722 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
44912769 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
44912815 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
44912849 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 62 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:44912832 original size:93 final size:93
Alignment explanation
Indices: 44912673--44912843 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
44912663 GGATGGTTGA
* *
44912673 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
44912738 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
44912766 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
44912831 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
44912844 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:44916231 original size:47 final size:47
Alignment explanation
Indices: 44916177--44916367 Score: 256
Period size: 47 Copynumber: 4.1 Consensus size: 47
44916167 TTAGGATTTT
** * *
44916177 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
44916224 ATGTGATGAATGTGAACATGCATATAGGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
44916271 ATGTGATGAATGTGAGCCTGCATATGTGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
44916318 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
44916365 ATG
1 ATG
44916368 CGAAATATGT
Statistics
Matches: 125, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 125 1.00
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:44916494 original size:98 final size:96
Alignment explanation
Indices: 44916341--44916534 Score: 300
Period size: 98 Copynumber: 2.0 Consensus size: 96
44916331 GAACATGCAT
*
44916341 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
*
44916406 ATGGCTAATGTGAAATATGTATGAGATGTGC
66 ATGGCTAATGTGAAATATGTAGGAGATGTGC
* *
44916437 ATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGCG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
* *
44916501 CGAATGGCTAGTGTGAAATATGTAGGCGATGTGC
63 CGAATGGCTAATGTGAAATATGTAGGAGATGTGC
44916535 GTATATTGTG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
95 1 0.01
96 25 0.28
97 2 0.02
98 61 0.69
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTAGGAGATGTGC
Found at i:44916540 original size:50 final size:48
Alignment explanation
Indices: 44916340--44916524 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
44916330 TGAACATGCA
*
44916340 TATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
44916388 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
44916436 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
44916486 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
44916525 GGCGATGTGC
Statistics
Matches: 123, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
47 1 0.01
48 78 0.63
49 4 0.03
50 39 0.32
51 1 0.01
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:44916791 original size:36 final size:37
Alignment explanation
Indices: 44916670--44916814 Score: 247
Period size: 37 Copynumber: 3.9 Consensus size: 37
44916660 GGAAATATAT
44916670 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
44916707 TCCGGGTAAGATCCGATGATTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
44916744 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTT-
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
44916780 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
44916815 CGTCTGAGCT
Statistics
Matches: 102, Mismatches: 6, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
36 33 0.32
37 69 0.68
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:44937787 original size:26 final size:26
Alignment explanation
Indices: 44937730--44937792 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
44937720 TTTTACTAAA
*
44937730 ATACCCCTAAGTATGAAAATTACCATT
1 ATACCCCT-AGTATGAAAATGACCATT
* *
44937757 TTACCCCTAG-ATGCAAAATGACCGTT
1 ATACCCCTAGTATG-AAAATGACCATT
44937783 ATACCCCTAG
1 ATACCCCTAG
44937793 GGTTAATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
25 3 0.10
26 21 0.68
27 7 0.23
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.27
Consensus pattern (26 bp):
ATACCCCTAGTATGAAAATGACCATT
Found at i:44938116 original size:19 final size:20
Alignment explanation
Indices: 44938094--44938138 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
44938084 CTGTTTTATT
44938094 ATGGGCC-AACTGTATTAAA
1 ATGGGCCTAACTGTATTAAA
* *
44938113 ATGGGCCTAACTGTGTTAAT
1 ATGGGCCTAACTGTATTAAA
44938133 ATGGGC
1 ATGGGC
44938139 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (20 bp):
ATGGGCCTAACTGTATTAAA
Found at i:44938271 original size:28 final size:28
Alignment explanation
Indices: 44938167--44938271 Score: 79
Period size: 28 Copynumber: 3.6 Consensus size: 28
44938157 ACTTGTAATA
* *
44938167 GGGCTACGGCCCAGACTGATACTGATAT
1 GGGCTAAGGCCCAGATTGATACTGATAT
*
44938195 GGGCT-AGGCCCAGTATGCTCTGATATTG-TAAT
1 GGGCTAAGGCCCAG-A---T-TGATACTGAT-AT
* * *
44938227 AGGGCTATGGCCGAGATTAATACTGATAT
1 -GGGCTAAGGCCCAGATTGATACTGATAT
44938256 GGGCTAAGGCCCAGAT
1 GGGCTAAGGCCCAGAT
44938272 AACTCTGATT
Statistics
Matches: 59, Mismatches: 9, Indels: 18
0.69 0.10 0.21
Matches are distributed among these distances:
27 7 0.12
28 20 0.34
29 8 0.14
30 2 0.03
31 1 0.02
32 9 0.15
33 6 0.10
34 6 0.10
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.25
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTGATACTGATAT
Found at i:44938294 original size:62 final size:61
Alignment explanation
Indices: 44938159--44938303 Score: 179
Period size: 61 Copynumber: 2.4 Consensus size: 61
44938149 ATATCTCGAC
* *
44938159 TTGTAATAGGGCTACGGCCCAGACTGATACTGATATGGGCTAGGCCCAGTATGCTCTGATA
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACTCTGATA
* * *
44938220 TTGTAATAGGGCTATGGCCGAGATTAATACTGATATGGGCTAAGGCCCAG-ATAACTCTGAT-
1 TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCT-AGGCCCAGTAT-ACTCTGATA
*
44938281 TTTTGAATAGGGCTTA-GGCCCAG
1 TTGT-AATAGGGC-TACGGCCCAG
44938304 TAAAGCTTGA
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
61 42 0.58
62 29 0.40
63 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (61 bp):
TTGTAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACTCTGATA
Found at i:44942445 original size:17 final size:17
Alignment explanation
Indices: 44942423--44942455 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
44942413 GTGGGTTTTC
44942423 AAAATGGAAATGGAAAT
1 AAAATGGAAATGGAAAT
44942440 AAAATGGAAATGGAAA
1 AAAATGGAAATGGAAA
44942456 CTAGCAATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.24, T:0.15
Consensus pattern (17 bp):
AAAATGGAAATGGAAAT
Found at i:44942629 original size:25 final size:26
Alignment explanation
Indices: 44942595--44942655 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
44942585 ACATATTTTC
44942595 TCAAAATTTTA-AAG-GAGTAAAATCG
1 TCAAAATTTTACAAGAG-GTAAAATCG
*
44942620 TCAAAATTTTACAATAGGTAAAATCG
1 TCAAAATTTTACAAGAGGTAAAATCG
*
44942646 TCAAATTTTT
1 TCAAAATTTT
44942656 GTTGGGGGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
25 11 0.34
26 20 0.62
27 1 0.03
ACGTcount: A:0.44, C:0.10, G:0.11, T:0.34
Consensus pattern (26 bp):
TCAAAATTTTACAAGAGGTAAAATCG
Found at i:44945976 original size:19 final size:19
Alignment explanation
Indices: 44945952--44945991 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
44945942 TATGTCATCA
*
44945952 TAAATTCATAGGCATAACT
1 TAAATTCATAAGCATAACT
* *
44945971 TAAATTTATAAGCATGACT
1 TAAATTCATAAGCATAACT
44945990 TA
1 TA
44945992 TACATTTTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.35
Consensus pattern (19 bp):
TAAATTCATAAGCATAACT
Found at i:44948605 original size:48 final size:48
Alignment explanation
Indices: 44948534--44948863 Score: 313
Period size: 48 Copynumber: 6.9 Consensus size: 48
44948524 TAAATTGCCA
* * * * * *
44948534 ATGCCATGTCCGAGACATGGTCTTACACTGGCT-TACATGTCGAGGTCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCT-CATATCAAGGCCG
* * * *
44948582 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAATGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAAGGCCG
* * * *
44948630 ATGCCATGTTCCAAACATGGTCTTACACTAACTCTCATATTATGGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAAGGCCG
* * * **
44948678 ACGCCATGTCCCAAACATGGTCTTACACTAGCGCGCATATCAACACCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAAGGCCG
* * * **
44948726 ATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAACGTTG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAAGGCCG
* * * * * **
44948774 ATGTCATGTTCCAGACATAGTCTTACACTGGCTCTCATAAT-GTGGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCAT-ATCAAGGCCG
* * * *
44948822 ATGCCATGTTCCAAATATGGTCTTACACTAGCACACATATCA
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCA
44948864 CTCAAATGTC
Statistics
Matches: 230, Mismatches: 49, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
47 2 0.01
48 225 0.98
49 3 0.01
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAAGGCCG
Found at i:44948797 original size:144 final size:144
Alignment explanation
Indices: 44948580--44948863 Score: 388
Period size: 144 Copynumber: 2.0 Consensus size: 144
44948570 ATGTCGAGGT
* * * * * *
44948580 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTTCCAAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTTCCAAA
* *
44948645 CATGGTCTTACACTAACTCTCATATTATGGCCGACGCCATGTCCCAAACATGGTCTTACACTAGC
66 CATAGTCTTACACTAACTCTCATAATATGGCCGACGCCATGTCCCAAACATGGTCTTACACTAGC
* *
44948710 GCGCATATCAACAC
131 ACACATATCAACAC
** * *
44948724 CGATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAACGTTGATGTCATGTTCCAGA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTTCCAAA
** * * * *
44948789 CATAGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTTCCAAATATGGTCTTACACTAGC
66 CATAGTCTTACACTAACTCTCATAATATGGCCGACGCCATGTCCCAAACATGGTCTTACACTAGC
44948854 ACACATATCA
131 ACACATATCA
44948864 CTCAAATGTC
Statistics
Matches: 120, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
144 120 1.00
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.27
Consensus pattern (144 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAACGCCGATGCCATGTTCCAAA
CATAGTCTTACACTAACTCTCATAATATGGCCGACGCCATGTCCCAAACATGGTCTTACACTAGC
ACACATATCAACAC
Found at i:44951290 original size:21 final size:22
Alignment explanation
Indices: 44951260--44951301 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
44951250 TAGTAAAAGT
44951260 CATTTCTCTAACCA-TAAACATG
1 CATTTCTCT-ACCATTAAACATG
44951282 CATTT-TCTACCATTAAACAT
1 CATTTCTCTACCATTAAACAT
44951302 CAGAATACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.21
21 10 0.53
22 5 0.26
ACGTcount: A:0.36, C:0.26, G:0.02, T:0.36
Consensus pattern (22 bp):
CATTTCTCTACCATTAAACATG
Found at i:44955180 original size:47 final size:47
Alignment explanation
Indices: 44955073--44955691 Score: 995
Period size: 47 Copynumber: 13.1 Consensus size: 47
44955063 GAAATGATAG
*
44955073 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGTGA
44955122 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
44955169 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
44955216 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
44955263 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
44955310 TAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
44955357 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGTGA
*
44955406 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
44955453 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* * *
44955500 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
44955547 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
44955594 TAAGGCCTAGTGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* * * * * * * **
44955641 CAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
44955688 TAAG
1 TAAG
44955692 TCCCAAAGGG
Statistics
Matches: 544, Mismatches: 24, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
47 462 0.85
49 82 0.15
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:44955557 original size:284 final size:284
Alignment explanation
Indices: 44955073--44955691 Score: 1053
Period size: 284 Copynumber: 2.2 Consensus size: 284
44955063 GAAATGATAG
*
44955073 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCG
*
44955138 ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
* * * *
44955203 TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATGTGTGATAAGG
131 TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGG
*
44955268 CCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGAT
196 CCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
44955333 GAATATGAAAGTGTATATGTGTGA
261 GAATATGAAAGTGTATATATGTGA
*
44955357 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCG
44955422 ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
66 ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
44955487 TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGG
131 TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGG
* *
44955552 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAGTGGCCGATGTGAT
196 CCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
44955617 GAATGTGAAAGTGTATATATGTGA
261 GAATATGAAAGTGTATATATGTGA
* * * * * * *
44955641 CAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATA-A-ATGTGATAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
44955692 TCCCAAAGGG
Statistics
Matches: 315, Mismatches: 20, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
282 10 0.03
283 1 0.00
284 304 0.97
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (284 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCG
ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGG
CCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
GAATATGAAAGTGTATATATGTGA
Found at i:44955866 original size:37 final size:37
Alignment explanation
Indices: 44955810--44955888 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
44955800 CCGAGCTCTA
* *
44955810 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
44955847 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
44955884 AAGAC
1 AAGAC
44955889 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:44959847 original size:3 final size:3
Alignment explanation
Indices: 44959835--44959870 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
44959825 ATATAACCAT
*
44959835 TTC TTC -TC TTC TTC TTC TTC TTC TTC TTT TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
44959871 ATTGCCTAGC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:44961351 original size:29 final size:30
Alignment explanation
Indices: 44961276--44961377 Score: 84
Period size: 30 Copynumber: 3.2 Consensus size: 30
44961266 TTGGGTACCG
*
44961276 ATTATAATTTATAAATTTTAAATTAATAATAGTAAA
1 ATTATAA-TT-TAACTTTTAAA--AATAATA--AAA
*
44961312 ATTAT-ATTTTACTTCTTAAAAATAATAAAA
1 ATTATAATTTAACTT-TTAAAAATAATAAAA
*
44961342 ATT-TAATTTACACTTTTAAAAATTATAAAA
1 ATTATAATTTA-ACTTTTAAAAATAATAAAA
44961372 A-TATAA
1 ATTATAA
44961378 ACTATTAAAA
Statistics
Matches: 58, Mismatches: 4, Indels: 14
0.76 0.05 0.18
Matches are distributed among these distances:
29 2 0.03
30 28 0.48
31 4 0.07
32 7 0.12
33 4 0.07
34 7 0.12
35 1 0.02
36 5 0.09
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (30 bp):
ATTATAATTTAACTTTTAAAAATAATAAAA
Found at i:44990542 original size:6 final size:6
Alignment explanation
Indices: 44990533--44990573 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
44990523 ATAACGGTAG
44990533 CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTA
1 CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTA
44990574 TTCAACACAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.49, C:0.17, G:0.17, T:0.17
Consensus pattern (6 bp):
CAGTAA
Found at i:44990614 original size:13 final size:13
Alignment explanation
Indices: 44990596--44990621 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
44990586 AGTGCTGAAT
44990596 CTGGTAACAGTAA
1 CTGGTAACAGTAA
44990609 CTGGTAACAGTAA
1 CTGGTAACAGTAA
44990622 TTCAACACAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (13 bp):
CTGGTAACAGTAA
Found at i:44990649 original size:46 final size:45
Alignment explanation
Indices: 44990553--44990655 Score: 138
Period size: 46 Copynumber: 2.2 Consensus size: 45
44990543 AACAGTAACA
*
44990553 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCTG
1 GTAACAGTAACAGTAACAGTATTCAACACACAAAATGCTGAATC-G
*
44990599 GTAACAGTAACTGGTAACAGTAATTCAACACACAAAATG-TCGAATC-
1 GTAACAGTAAC-AGTAACAGT-ATTCAACACACAAAATGCT-GAATCG
44990645 GTAACAGTAAC
1 GTAACAGTAAC
44990656 GTAGTCGGCA
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
46 22 0.42
47 9 0.17
48 21 0.40
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.21
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAGTATTCAACACACAAAATGCTGAATCG
Found at i:44998084 original size:39 final size:39
Alignment explanation
Indices: 44998041--44998256 Score: 195
Period size: 39 Copynumber: 5.6 Consensus size: 39
44998031 GCTCCTCGTT
* *
44998041 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTA-ATCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATATCGCA
* *
44998080 CAAATGCCTTCGGGACTTAACCCGGATTTAG--TA--G--
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATATCGCA
*
44998114 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATATCGCA
*
44998153 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATATCGCA
* * *
44998192 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCACT-TAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-A-TATCGCA
44998233 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
44998257 CATCATTCAA
Statistics
Matches: 154, Mismatches: 10, Indels: 26
0.81 0.05 0.14
Matches are distributed among these distances:
33 14 0.09
34 14 0.09
35 1 0.01
36 1 0.01
37 1 0.01
38 1 0.01
39 96 0.62
40 16 0.10
41 9 0.06
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATATCGCA
Found at i:44998184 original size:72 final size:73
Alignment explanation
Indices: 44998041--44998184 Score: 204
Period size: 73 Copynumber: 2.0 Consensus size: 73
44998031 GCTCCTCGTT
*
44998041 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATCGCACAAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAATCGCACAAATGCCTTCGGGACTTAACCCGGA
*
44998106 TTTAGTAG
66 ATTAGTAG
* * *
44998114 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTA-ATCGCACAAATGCCTTCGGGACTTAACCCG
44998176 GAATTAGTA
64 GAATTAGTA
44998185 TCTCGCACAA
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
71 1 0.02
72 30 0.47
73 33 0.52
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.25
Consensus pattern (73 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAATCGCACAAATGCCTTCGGGACTTAACCCGGA
ATTAGTAG
Found at i:45006087 original size:39 final size:39
Alignment explanation
Indices: 45005966--45006167 Score: 277
Period size: 39 Copynumber: 5.3 Consensus size: 39
45005956 GCTCCTCGTT
* * * * *
45005966 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTTGGG-CTTAGCCCGGAATTAGTATCTCGCA
*
45006006 CAAATGCC-TTCGGCTTAGCCCGG-ATTAGTA-CTCGCA
1 CAAATGCCTTTGGGCTTAGCCCGGAATTAGTATCTCGCA
45006042 CAAATGCCTTTGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTTGGGCTTAGCCCGGAATTAGTATCTCGCA
* *
45006081 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGTA
1 CAAATGCCTTTGGGCTTAGCCCGGAATTAGTATCTCGCA
*
45006120 CAAATGCC-TTCGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTTGGGCTTAGCCCGGAATTAGTATCTCGCA
*
45006158 CAACTGCCTT
1 CAAATGCCTT
45006168 CGGATCTTAG
Statistics
Matches: 146, Mismatches: 12, Indels: 9
0.87 0.07 0.05
Matches are distributed among these distances:
36 14 0.10
37 20 0.14
38 49 0.34
39 55 0.38
40 8 0.05
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (39 bp):
CAAATGCCTTTGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:45006144 original size:38 final size:38
Alignment explanation
Indices: 45005966--45006170 Score: 297
Period size: 38 Copynumber: 5.3 Consensus size: 38
45005956 GCTCCTCGTT
* * * *
45005966 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTC-GG-CTTAGCCCGGAATTAGTATCTCGCA
45006006 CAAATGCCTTCGGCTTAGCCCGG-ATTAGTA-CTCGCA
1 CAAATGCCTTCGGCTTAGCCCGGAATTAGTATCTCGCA
*
45006042 CAAATGCCTTTGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCC-TTCGGCTTAGCCCGGAATTAGTATCTCGCA
*
45006081 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGTA
1 CAAATGCCTTC-GGCTTAGCCCGGAATTAGTATCTCGCA
45006120 CAAATGCCTTCGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGCTTAGCCCGGAATTAGTATCTCGCA
*
45006158 CAACTGCCTTCGG
1 CAAATGCCTTCGG
45006171 ATCTTAGTCC
Statistics
Matches: 153, Mismatches: 8, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
36 14 0.09
37 20 0.13
38 55 0.36
39 53 0.35
40 11 0.07
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.26
Consensus pattern (38 bp):
CAAATGCCTTCGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:45006148 original size:77 final size:75
Alignment explanation
Indices: 45005960--45006184 Score: 299
Period size: 77 Copynumber: 2.9 Consensus size: 75
45005950 GCTATAGCTC
* * * * *
45005960 CTCGTTCAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCACAAATGCCTTC-GGCTTAG
1 CTCGTACAAATGCCTTC-GG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAG
45006024 CCCGGATTAGTA
64 CCCGGATTAGTA
* *
45006036 CTCGCACAAATGCCTTTGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGC
1 CTCGTACAAATGCC-TTCGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGC
45006101 CCGGAATTAGTA
65 CCGG-ATTAGTA
* *
45006113 TCTCGTACAAATGCCTTCGGCTTAGCCCGGAATTAGTATCTCGCACAACTGCCTTCGGATCTTAG
1 -CTCGTACAAATGCCTTCGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGG-GCTTAG
*
45006178 TCCGGAT
64 CCCGGAT
45006185 ATGGTCACTT
Statistics
Matches: 132, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
75 32 0.24
76 26 0.20
77 52 0.39
78 22 0.17
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (75 bp):
CTCGTACAAATGCCTTCGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCC
CGGATTAGTA
Found at i:45013806 original size:28 final size:28
Alignment explanation
Indices: 45013743--45013924 Score: 303
Period size: 28 Copynumber: 6.5 Consensus size: 28
45013733 ATATTAAGTC
* *
45013743 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
45013770 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
45013798 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
45013826 CGCACACTTAGTGCTACATAATCAAATT
1 CGCACACTTAGTGCTACATAATCAAACT
*
45013854 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
45013882 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
45013910 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45013925 GTACAATTTA
Statistics
Matches: 149, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 22 0.15
28 127 0.85
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:45016835 original size:9 final size:9
Alignment explanation
Indices: 45016821--45016850 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
45016811 ACCAAACCGA
45016821 AAATGATAC
1 AAATGATAC
45016830 AAATGATAC
1 AAATGATAC
45016839 AAATGATAC
1 AAATGATAC
45016848 AAA
1 AAA
45016851 ATAATCTGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.60, C:0.10, G:0.10, T:0.20
Consensus pattern (9 bp):
AAATGATAC
Found at i:45019540 original size:20 final size:20
Alignment explanation
Indices: 45019507--45019556 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
45019497 CAATCATGTA
45019507 GGTATCGATACTAGAATATG
1 GGTATCGATACTAGAATATG
* *
45019527 GGTATTGATTCTAGAATATG
1 GGTATCGATACTAGAATATG
45019547 GGTATCGATA
1 GGTATCGATA
45019557 TTTTTCTGGC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.32, C:0.08, G:0.26, T:0.34
Consensus pattern (20 bp):
GGTATCGATACTAGAATATG
Found at i:45020846 original size:65 final size:65
Alignment explanation
Indices: 45020742--45020887 Score: 256
Period size: 65 Copynumber: 2.2 Consensus size: 65
45020732 GATACACGGA
**
45020742 TCTCCAACACACCAAATCACTCATAGAGCCAAACATATCCCAAAAGTGAAGTATAAAGCTAACAC
1 TCTCCAACACACCAAATCACTCATAGAGCCAAACATATCCCAAAAGTGAAACATAAAGCTAACAC
*
45020807 TCTCCAACACACCAAATCACTCATAGAGCCGAACATATCCCAAAAGTGAAACATAAAGCTAACAC
1 TCTCCAACACACCAAATCACTCATAGAGCCAAACATATCCCAAAAGTGAAACATAAAGCTAACAC
*
45020872 TCTTCAACACACCAAA
1 TCTCCAACACACCAAA
45020888 CATGTCCCTT
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 77 1.00
ACGTcount: A:0.45, C:0.31, G:0.08, T:0.16
Consensus pattern (65 bp):
TCTCCAACACACCAAATCACTCATAGAGCCAAACATATCCCAAAAGTGAAACATAAAGCTAACAC
Found at i:45021650 original size:34 final size:35
Alignment explanation
Indices: 45021604--45021685 Score: 105
Period size: 34 Copynumber: 2.4 Consensus size: 35
45021594 CCGAACAGTC
*
45021604 TGGGCCTAAGCCCATAT-CAGTAGCAATATTAGTG
1 TGGGCCTTAGCCCATATACAGTAGCAATATTAGTG
* * * *
45021638 TGGGCCTTAGCCC-TTTACAGTTGCAGTGTTAGTG
1 TGGGCCTTAGCCCATATACAGTAGCAATATTAGTG
45021672 TGGGCCTTAGCCCA
1 TGGGCCTTAGCCCA
45021686 ATTTAGTACA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
33 2 0.05
34 39 0.95
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (35 bp):
TGGGCCTTAGCCCATATACAGTAGCAATATTAGTG
Found at i:45031262 original size:22 final size:22
Alignment explanation
Indices: 45031226--45031278 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 22
45031216 ACTCCTCAAC
45031226 TCCCCATAATCATCTCCCAA-AAA
1 TCCCCATAA--ATCTCCCAACAAA
*
45031249 TCCTCCATAAATCTCTCAACAAA
1 TCC-CCATAAATCTCCCAACAAA
45031272 TCCCCAT
1 TCCCCAT
45031279 CTATCCACAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
22 12 0.44
23 9 0.33
24 6 0.22
ACGTcount: A:0.36, C:0.40, G:0.00, T:0.25
Consensus pattern (22 bp):
TCCCCATAAATCTCCCAACAAA
Found at i:45032695 original size:27 final size:27
Alignment explanation
Indices: 45032665--45032735 Score: 70
Period size: 29 Copynumber: 2.6 Consensus size: 27
45032655 GTGTACTTCG
**
45032665 TATATATTACCTTTGCGGCATACTTTA
1 TATATATTACCTTTGCGGCATACACTA
* **
45032692 TATACATGTAGCCTTTATGGCATACACTA
1 TATATAT-TA-CCTTTGCGGCATACACTA
*
45032721 TATATATAACCTTTG
1 TATATATTACCTTTG
45032736 TGGTGTACTC
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
27 11 0.32
28 3 0.09
29 20 0.59
ACGTcount: A:0.30, C:0.18, G:0.11, T:0.41
Consensus pattern (27 bp):
TATATATTACCTTTGCGGCATACACTA
Found at i:45034424 original size:171 final size:171
Alignment explanation
Indices: 45034139--45034480 Score: 666
Period size: 171 Copynumber: 2.0 Consensus size: 171
45034129 CACCCTGCTG
*
45034139 ACTTGCTGGCGAGTTAGAGTATTGGAACATACTAGCATTAAAGTATCCACCTATTGGAGGTATCT
1 ACTTGCTAGCGAGTTAGAGTATTGGAACATACTAGCATTAAAGTATCCACCTATTGGAGGTATCT
45034204 AAGGATTTAATTACAGGGAATTTTATAGTGAAGAAGGAATACACATGGGAAGAGTATGGCTTAGA
66 AAGGATTTAATTACAGGGAATTTTATAGTGAAGAAGGAATACACATGGGAAGAGTATGGCTTAGA
45034269 GTTTTGGTTGGGTACATAGAGCCTACAAGGTGTATGAGAAT
131 GTTTTGGTTGGGTACATAGAGCCTACAAGGTGTATGAGAAT
*
45034310 ACTTGCTAGCGAGTTAGAGTATTGGAACATACTAGCATTAAAGTGTCCACCTATTGGAGGTATCT
1 ACTTGCTAGCGAGTTAGAGTATTGGAACATACTAGCATTAAAGTATCCACCTATTGGAGGTATCT
45034375 AAGGATTTAATTACAGGGAATTTTATAGTGAAGAAGGAATACACATGGGAAGAGTATGGCTTAGA
66 AAGGATTTAATTACAGGGAATTTTATAGTGAAGAAGGAATACACATGGGAAGAGTATGGCTTAGA
45034440 GTTTTGGTTGGGTACATAGAGCCTACAAGGTGTATGAGAAT
131 GTTTTGGTTGGGTACATAGAGCCTACAAGGTGTATGAGAAT
45034481 GTTGTATAAG
Statistics
Matches: 169, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
171 169 1.00
ACGTcount: A:0.33, C:0.11, G:0.27, T:0.29
Consensus pattern (171 bp):
ACTTGCTAGCGAGTTAGAGTATTGGAACATACTAGCATTAAAGTATCCACCTATTGGAGGTATCT
AAGGATTTAATTACAGGGAATTTTATAGTGAAGAAGGAATACACATGGGAAGAGTATGGCTTAGA
GTTTTGGTTGGGTACATAGAGCCTACAAGGTGTATGAGAAT
Found at i:45036537 original size:47 final size:47
Alignment explanation
Indices: 45036459--45036858 Score: 611
Period size: 47 Copynumber: 8.5 Consensus size: 47
45036449 CCCTTCGGGA
* * * * * * *
45036459 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
45036506 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCACTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45036553 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45036600 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45036647 CTTATCACAGATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45036694 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45036741 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45036788 CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45036837 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
45036859 TTGGCTGAAT
Statistics
Matches: 332, Mismatches: 19, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 288 0.87
49 44 0.13
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:45044182 original size:43 final size:43
Alignment explanation
Indices: 45044098--45044183 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
45044088 AAATCTTACA
* **
45044098 ATGCCAATGTCCCAGACATGGTCTTACATGTAGTCACATATCG
1 ATGCCAATGTCCCAGACAAGGTCTTACATGTACACACATATCG
* *
45044141 ATGCCACTGTCCCAGACAAGGTCTTAC-TCGTACACATATATCG
1 ATGCCAATGTCCCAGACAAGGTCTTACAT-GTACACACATATCG
45044184 GAGTCACATA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
42 1 0.03
43 36 0.97
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAAGGTCTTACATGTACACACATATCG
Found at i:45045816 original size:43 final size:43
Alignment explanation
Indices: 45045722--45045840 Score: 134
Period size: 43 Copynumber: 2.8 Consensus size: 43
45045712 GAAGTTTGAA
* ** * *
45045722 CTCGTTGAGTGGTCCGAGTTCATGATATATGTG-GCATCTGAG
1 CTCGTTGAGTGGTCCGAGTTCATAATGGATGCGAGCATCCGAG
* ** *
45045764 CTCGCTGAGTGGTTTGAGTTCATTATGGATGCGAGCATCCGAG
1 CTCGTTGAGTGGTCCGAGTTCATAATGGATGCGAGCATCCGAG
45045807 CTCGTTGAGTAGG-CCGAGTTCATAATGGATGCGA
1 CTCGTTGAGT-GGTCCGAGTTCATAATGGATGCGA
45045841 TACATGTGAT
Statistics
Matches: 63, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
42 26 0.41
43 35 0.56
44 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.32, T:0.30
Consensus pattern (43 bp):
CTCGTTGAGTGGTCCGAGTTCATAATGGATGCGAGCATCCGAG
Found at i:45047716 original size:36 final size:36
Alignment explanation
Indices: 45047669--45047740 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
45047659 TTAGTGAAGT
45047669 ATGCTAAATCATTAAAATGATGCCATGATGTATATC
1 ATGCTAAATCATTAAAATGATGCCATGATGTATATC
45047705 ATGCTAAATCATTAAAATGATGCCATGATGTATATC
1 ATGCTAAATCATTAAAATGATGCCATGATGTATATC
45047741 TTTGATGTGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (36 bp):
ATGCTAAATCATTAAAATGATGCCATGATGTATATC
Found at i:45083423 original size:40 final size:40
Alignment explanation
Indices: 45083325--45083586 Score: 307
Period size: 40 Copynumber: 6.6 Consensus size: 40
45083315 TCCTCGTTCA
* * * * *
45083325 AATGCCTTCGGGACATATCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
45083364 AATGCCTTCAGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
45083404 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
45083444 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
45083484 AATGCCTTCGGGACTTAACCCGGATTTAGT-TCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
45083523 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
45083563 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
45083587 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
38 3 0.02
39 62 0.31
40 124 0.63
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:45083466 original size:119 final size:119
Alignment explanation
Indices: 45083325--45083586 Score: 305
Period size: 119 Copynumber: 2.2 Consensus size: 119
45083315 TCCTCGTTCA
* * * *
45083325 AATGCCTTCGGGACATATCCCGGTTTTAGTAACTCACAC-AATGCCTTCAGGACATAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACGAATGCCTTCAGGACATAACCCGGAT
* * * *
45083389 TTAACAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
66 TT-ACAACTCGCACAAAGGCCTTC-GGATCTTAACCCGGATATAATAACTTAGCAC
* * *
45083443 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGA
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACGAATGCCTTCAGGACATAACCCGGA
*** * * *
45083508 TTTAGTTCTCGCACAAAGGCCTTCGGATCTTAATCCGGATATATTCACTTAGCAC
65 TTTACAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATATAATAACTTAGCAC
* *
45083563 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
45083587 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
118 3 0.02
119 88 0.73
120 30 0.25
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACGAATGCCTTCAGGACATAACCCGGAT
TTACAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATATAATAACTTAGCAC
Found at i:45083570 original size:79 final size:80
Alignment explanation
Indices: 45083328--45083586 Score: 265
Period size: 79 Copynumber: 3.3 Consensus size: 80
45083318 TCGTTCAAAT
* * * * * * * * *
45083328 GCCTTCGGGACATATCCCGGTTTTAGTAACTCACAC-AATGCCTTCAGGACATAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* * *
45083392 ACAACTCGCACGAAT
66 ATAACTAGCACGAAA
* * *
45083407 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* *
45083472 ATAACTCGCACGAAT
66 ATAACTAGCACGAAA
* * *
45083487 GCCTTCGGGACTTAACCCGGATTTAGT-TCTCGCACAAAGGCCTTC-GGATCTTAATCCGGATAT
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATAT
* *
45083550 ATTCACTTAGCAC-AAA
65 AATAAC-TAGCACGAAA
*
45083566 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
45083587 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
78 3 0.02
79 84 0.53
80 71 0.45
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
ATAACTAGCACGAAA
Found at i:45091368 original size:40 final size:40
Alignment explanation
Indices: 45091270--45091531 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
45091260 TCCTCGTTCA
* * * * *
45091270 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
45091309 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
45091349 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
45091389 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
45091429 AATGCCTTCGGGACTTAACCCGGATTTAGT-TCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
45091468 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
45091508 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
45091532 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 19, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
38 3 0.02
39 63 0.32
40 125 0.63
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:45091464 original size:119 final size:119
Alignment explanation
Indices: 45091270--45091531 Score: 323
Period size: 119 Copynumber: 2.2 Consensus size: 119
45091260 TCCTCGTTCA
* * *
45091270 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGATT
* * * *
45091335 TAACAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
66 TAACAACTCGCACAAAGGCCTTC-GGATCTTAACCCGGATATAATAACTTAGCAC
* * *
45091388 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACAC-AATGCCTTCGGGACATAACCCGGA
*** * * *
45091453 TTT-AGTTCTCGCACAAAGGCCTTCGGATCTTAATCCGGATATATTCACTTAGCAC
64 TTTAACAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATATAATAACTTAGCAC
*
45091508 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
45091532 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
118 3 0.02
119 88 0.72
120 31 0.25
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGATT
TAACAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATATAATAACTTAGCAC
Found at i:45091515 original size:79 final size:80
Alignment explanation
Indices: 45091273--45091531 Score: 274
Period size: 79 Copynumber: 3.3 Consensus size: 80
45091263 TCGTTCAAAT
* * * * * * * *
45091273 GCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* * *
45091337 ACAACTCGCACGAAT
66 ATAACTAGCACGAAA
* * *
45091352 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* *
45091417 ATAACTCGCACGAAT
66 ATAACTAGCACGAAA
* * *
45091432 GCCTTCGGGACTTAACCCGGATTTAGT-TCTCGCACAAAGGCCTTC-GGATCTTAATCCGGATAT
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATAT
* *
45091495 ATTCACTTAGCAC-AAA
65 AATAAC-TAGCACGAAA
*
45091511 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
45091532 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
78 3 0.02
79 84 0.53
80 72 0.45
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
ATAACTAGCACGAAA
Found at i:45096617 original size:51 final size:51
Alignment explanation
Indices: 45096541--45096643 Score: 170
Period size: 51 Copynumber: 2.0 Consensus size: 51
45096531 CTATAGGGAT
*
45096541 CATGCTCAATGGACGAAATGTTATAGGCAAATTAGTACCCAAGTCTCGTTG
1 CATGCTCAATGGACGAAACGTTATAGGCAAATTAGTACCCAAGTCTCGTTG
* * *
45096592 CATGCTCGATGGAGGAAACGTTATAGGTAAATTAGTACCCAAGTCTCGTTG
1 CATGCTCAATGGACGAAACGTTATAGGCAAATTAGTACCCAAGTCTCGTTG
45096643 C
1 C
45096644 CTTTCTCCTC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (51 bp):
CATGCTCAATGGACGAAACGTTATAGGCAAATTAGTACCCAAGTCTCGTTG
Found at i:45099694 original size:25 final size:25
Alignment explanation
Indices: 45099660--45099709 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
45099650 TTATCAGTAC
45099660 ATAATATCATACGTGTATGCAAAAT
1 ATAATATCATACGTGTATGCAAAAT
45099685 ATAATATCATACGTGTATGCAAAAT
1 ATAATATCATACGTGTATGCAAAAT
45099710 GTCATGCTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (25 bp):
ATAATATCATACGTGTATGCAAAAT
Done.