Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 140 of 333
Found at i:45847514 original size:94 final size:94
Alignment explanation
Indices: 45847348--45847524 Score: 266
Period size: 94 Copynumber: 1.9 Consensus size: 94
45847338 ATGGGTAAGC
* * * *
45847348 TGCCAATGCCATGTCCCAGACATGGTTTTACATTGACTATCATCTCGTAGCTGATGCATGTCCCA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCA
45847413 GACATGTCTTACACTAGCTCTCATCTCAT
66 GACATGTCTTACACTAGCTCTCATCTCAT
* * * *
45847442 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATGCATGTCCC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGACTATCAT-ATCGTAGCCGATGCATGTCCC
45847506 AGACATGTCTTACACTAGC
65 AGACATGTCTTACACTAGC
45847525 CCACAAAGAA
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
94 73 0.99
95 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (94 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCA
GACATGTCTTACACTAGCTCTCATCTCAT
Found at i:45848077 original size:4 final size:4
Alignment explanation
Indices: 45848068--45848096 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
45848058 AGCAAATGTG
45848068 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
45848097 TAGAAAAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:45850379 original size:30 final size:30
Alignment explanation
Indices: 45850345--45850402 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
45850335 AAATTCACAT
* *
45850345 CTTTGATAAAATGACCATTTTGCCCCTAGA
1 CTTTGACAAAATGACCATTTTACCCCTAGA
* *
45850375 CTTTGGCATAATGACCATTTTACCCCTA
1 CTTTGACAAAATGACCATTTTACCCCTA
45850403 TGCTCGAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.34
Consensus pattern (30 bp):
CTTTGACAAAATGACCATTTTACCCCTAGA
Found at i:45856422 original size:67 final size:67
Alignment explanation
Indices: 45856213--45856515 Score: 292
Period size: 67 Copynumber: 4.5 Consensus size: 67
45856203 GTAACAGGGT
* * * * **
45856213 TAATGTATAAGACCATAGCTCGGCTATGAAAACATAGAGAGTTTTCCAATACATTAAACATAGG-
1 TAATGTGTAAGACCATAGCTCGACTATGACAACATAGAGAGTTCTCCAGGACATTAAACAT-GGT
45856277 GTA
65 GTA
* * * * *
45856280 TATTGTGTAAGACCATAGCTTGACTAT-ATCAATATAGAGAG-TCTACAGGACATTAATCAT-GT
1 TAATGTGTAAGACCATAGCTCGACTATGA-CAACATAGAGAGTTCTCCAGGACATTAAACATGGT
45856342 GGTA
65 -GTA
* * * * * * *
45856346 TATTATGTAAGACCATAGGTCGACTGTGGCAACAGAGAGAGTCCTCCAGGACATTAAACATGGTG
1 TAATGTGTAAGACCATAGCTCGACTATGACAACATAGAGAGTTCTCCAGGACATTAAACATGGTG
45856411 TA
66 TA
* * * *
45856413 TAATGTGTAAGACCATAGCTC-AGCTATGACAACATAGTGAGTTTTCTAGGACATTAAACATGGG
1 TAATGTGTAAGACCATAGCTCGA-CTATGACAACATAGAGAGTTCTCCAGGACATTAAACATGGT
45856477 GTA
65 GTA
* * * * *
45856480 TGATGTGTAAAACCATATCTCAACTATGGCAACATA
1 TAATGTGTAAGACCATAGCTCGACTATGACAACATA
45856516 TGGAGTCAAC
Statistics
Matches: 192, Mismatches: 36, Indels: 16
0.79 0.15 0.07
Matches are distributed among these distances:
64 1 0.01
66 52 0.27
67 136 0.71
68 3 0.02
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (67 bp):
TAATGTGTAAGACCATAGCTCGACTATGACAACATAGAGAGTTCTCCAGGACATTAAACATGGTG
TA
Found at i:45857650 original size:17 final size:17
Alignment explanation
Indices: 45857630--45857668 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
45857620 CCCATGGAAA
* * *
45857630 ATACTGTCCGCCAGGTG
1 ATACTATCCACCACGTG
45857647 ATACTATCCACCACGTG
1 ATACTATCCACCACGTG
45857664 ATACT
1 ATACT
45857669 TATTCGCCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.26
Consensus pattern (17 bp):
ATACTATCCACCACGTG
Found at i:45857955 original size:34 final size:34
Alignment explanation
Indices: 45857912--45857985 Score: 114
Period size: 34 Copynumber: 2.2 Consensus size: 34
45857902 CTTTTTGCCC
*
45857912 TTTGTATCTAGATTGGACAAAAGTATAATCATAG
1 TTTGTATCTAGATTGGACAAAAGTATAATCACAG
* *
45857946 TTTGTATCTAGATTGGACAGAAGTATAGTCACAG
1 TTTGTATCTAGATTGGACAAAAGTATAATCACAG
45857980 -TTGTAT
1 TTTGTAT
45857986 AGTCCAATCT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
33 6 0.16
34 31 0.84
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.36
Consensus pattern (34 bp):
TTTGTATCTAGATTGGACAAAAGTATAATCACAG
Found at i:45860422 original size:25 final size:27
Alignment explanation
Indices: 45860377--45860427 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 27
45860367 TTTTAACTAA
* *
45860377 AGTGTACATTTATATTGTAAA-AAAAT
1 AGTGTACATTAATATTATAAATAAAAT
45860403 AGTGTA-ATTAATATTATAAATAAAA
1 AGTGTACATTAATATTATAAATAAAA
45860428 CATGAATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.51, C:0.02, G:0.10, T:0.37
Consensus pattern (27 bp):
AGTGTACATTAATATTATAAATAAAAT
Found at i:45865213 original size:27 final size:27
Alignment explanation
Indices: 45865183--45865360 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
45865173 ATATTGAGCC
* *
45865183 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
45865210 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
45865237 CGCACACTTAGTGCTACATAGTCAACCT
1 CGCACACTTAGTGCTACATAATCAA-CT
** ** *
45865265 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
45865292 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
45865319 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
45865346 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45865361 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:45865322 original size:82 final size:81
Alignment explanation
Indices: 45865204--45865359 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 81
45865194 TGCTATATAA
* *
45865204 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTC-AACCTCGC
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAA--TCGC
45865268 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * **
45865286 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
45865350 CACTTAGTGC
65 CACTTAGTGC
45865360 TGTACAATTT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
81 16 0.24
82 48 0.73
83 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:45867326 original size:46 final size:45
Alignment explanation
Indices: 45867273--45867445 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 45
45867263 TGGTTGAGCA
45867273 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-CTTATGGATGCAAATG
* * * * *
45867319 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGCAA--ATG
* * *
45867364 CATCCGAACTTGTTGAGTTGAGTCTGAGTTCCTTTATGGATGC-GATCG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCC-TTATGGATGCAAAT-G
*
45867412 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-CTTA
45867446 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 57 0.56
47 28 0.27
48 3 0.03
50 4 0.04
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.32
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGCAAATG
Found at i:45867429 original size:93 final size:93
Alignment explanation
Indices: 45867270--45867440 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
45867260 GGATGGTTGA
*
45867270 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
45867335 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
45867363 GCATCCGAACTTGTTGAGTTGAGTCTGAGTTC-CTTTATGGATGC-GATCGTCCGAGCTCGTTGA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TTATGGATGCAAAT-GTCCGAACTCGTTGA
45867426 GTTGAGTCCGAGTTC
64 GTTGAGTCCGAGTTC
45867441 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
92 3 0.04
93 68 0.96
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.32
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:45867707 original size:19 final size:20
Alignment explanation
Indices: 45867670--45867707 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
45867660 ATAAGGTGGT
45867670 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
45867690 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
45867708 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:45874228 original size:49 final size:47
Alignment explanation
Indices: 45874114--45874283 Score: 250
Period size: 47 Copynumber: 3.6 Consensus size: 47
45874104 TATTTGAATA
45874114 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
45874163 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
45874210 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
45874257 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
45874284 TCCCGAAGGG
Statistics
Matches: 111, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
47 99 0.89
49 12 0.11
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:45875755 original size:43 final size:43
Alignment explanation
Indices: 45875707--45875852 Score: 283
Period size: 43 Copynumber: 3.4 Consensus size: 43
45875697 TTGGTTTTCA
45875707 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
45875750 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
45875793 GCACTAAGTGTGCGGGGAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
45875836 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
45875853 TTGAAATGCA
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 101 1.00
ACGTcount: A:0.23, C:0.14, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:45875869 original size:29 final size:29
Alignment explanation
Indices: 45875834--45875907 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
45875824 GTTGTGAGAT
* *
45875834 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
45875863 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
45875892 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
45875908 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:45876342 original size:40 final size:40
Alignment explanation
Indices: 45876216--45876451 Score: 183
Period size: 40 Copynumber: 5.9 Consensus size: 40
45876206 TCGAATGATG
** *
45876216 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
45876256 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
* *
45876296 TTCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
** *
45876336 TCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** ** * * *
45876376 TCCGTGCTAAACCCCGAAGAGCATTTGTGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
45876416 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
45876452 CGTGTATTCG
Statistics
Matches: 156, Mismatches: 36, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
39 1 0.01
40 136 0.87
41 19 0.12
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:45880794 original size:47 final size:47
Alignment explanation
Indices: 45880715--45880931 Score: 335
Period size: 47 Copynumber: 4.6 Consensus size: 47
45880705 TATTTGAATA
*
45880715 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
45880764 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
45880811 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
45880858 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
45880905 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
45880932 TCCCGAAGGG
Statistics
Matches: 157, Mismatches: 11, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
47 145 0.92
49 12 0.08
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:45885803 original size:46 final size:46
Alignment explanation
Indices: 45885753--45885925 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
45885743 TGGTTGAGCA
*
45885753 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
45885799 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
45885846 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
45885892 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
45885926 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:45885909 original size:93 final size:93
Alignment explanation
Indices: 45885750--45885920 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
45885740 GGATGGTTGA
* *
45885750 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
45885815 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
45885843 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
45885908 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
45885921 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:45886187 original size:19 final size:20
Alignment explanation
Indices: 45886150--45886187 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
45886140 ATAAGGTGGT
45886150 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
45886170 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
45886188 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:45908900 original size:27 final size:26
Alignment explanation
Indices: 45908852--45908903 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
45908842 GCGAGGCTGC
*
45908852 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
45908878 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
45908904 TTTCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:45913251 original size:25 final size:25
Alignment explanation
Indices: 45913223--45913272 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
45913213 GAATTAAGAT
45913223 TGTATAAATTGAAATTGAAATTGTA
1 TGTATAAATTGAAATTGAAATTGTA
45913248 TGTATAAATTGAAATTGAAATTGTA
1 TGTATAAATTGAAATTGAAATTGTA
45913273 AAAATAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.00, G:0.16, T:0.40
Consensus pattern (25 bp):
TGTATAAATTGAAATTGAAATTGTA
Found at i:45913274 original size:19 final size:19
Alignment explanation
Indices: 45913228--45913274 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
45913218 AAGATTGTAT
45913228 AAATTG-AAATTGAAATTG
1 AAATTGTAAATTGAAATTG
* *
45913246 -TATGTATAAATTGAAATTG
1 AAAT-TGTAAATTGAAATTG
45913265 AAATTGTAAA
1 AAATTGTAAA
45913275 AATAAATAGA
Statistics
Matches: 22, Mismatches: 4, Indels: 5
0.71 0.13 0.16
Matches are distributed among these distances:
17 2 0.09
18 1 0.05
19 17 0.77
20 2 0.09
ACGTcount: A:0.49, C:0.00, G:0.15, T:0.36
Consensus pattern (19 bp):
AAATTGTAAATTGAAATTG
Found at i:45913279 original size:25 final size:25
Alignment explanation
Indices: 45913226--45913289 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
45913216 TTAAGATTGT
***
45913226 ATAAATTGAAATTGAAATTGTATGT
1 ATAAATTGAAATTGAAATTGTAAAA
45913251 ATAAATTGAAATTGAAATTGTAAAA
1 ATAAATTGAAATTGAAATTGTAAAA
*
45913276 ATAAATAG-AATTGA
1 ATAAATTGAAATTGA
45913290 GGGAAAAGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
24 6 0.17
25 29 0.83
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (25 bp):
ATAAATTGAAATTGAAATTGTAAAA
Found at i:45914700 original size:19 final size:20
Alignment explanation
Indices: 45914664--45914701 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
45914654 TATATATCTG
* *
45914664 TTTTATATATTTTTTTATAA
1 TTTTATATATTATGTTATAA
45914684 TTTT-TATATTATGTTATA
1 TTTTATATATTATGTTATA
45914702 TTATAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (20 bp):
TTTTATATATTATGTTATAA
Found at i:45914709 original size:24 final size:24
Alignment explanation
Indices: 45914678--45914725 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
45914668 ATATATTTTT
*
45914678 TTATAATTTTTATATTATGT-TATA
1 TTATAATTTTGATA-TATGTGTATA
45914702 TTATAATTTTGATATATGTGTATA
1 TTATAATTTTGATATATGTGTATA
45914726 AGATGATTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.23
24 17 0.77
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.58
Consensus pattern (24 bp):
TTATAATTTTGATATATGTGTATA
Found at i:45932410 original size:30 final size:31
Alignment explanation
Indices: 45932371--45932432 Score: 74
Period size: 29 Copynumber: 2.0 Consensus size: 31
45932361 TAAATTAAAT
*
45932371 TGAGAATCTTAAATTGCTTATGATGAA-TGAA
1 TGAGAATCTT-AATCGCTTATGATGAATTGAA
* *
45932402 TGAG-ATCTTGATCGTTTATGATGAATTGAA
1 TGAGAATCTTAATCGCTTATGATGAATTGAA
45932432 T
1 T
45932433 TAAATTTTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 13 0.48
30 10 0.37
31 4 0.15
ACGTcount: A:0.34, C:0.06, G:0.21, T:0.39
Consensus pattern (31 bp):
TGAGAATCTTAATCGCTTATGATGAATTGAA
Found at i:45940684 original size:46 final size:46
Alignment explanation
Indices: 45940538--45940754 Score: 151
Period size: 46 Copynumber: 4.7 Consensus size: 46
45940528 AGTATATCTG
* * * * *
45940538 TGCCGATTCCATGTCCTAGACATGGTCTTCCACT-G-ACACATCTCG
1 TGCCGA-TGCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCA
* * *
45940583 TAGCCGATGCATGTCCCAGACAT-GTCTTATACTAGC-TTACGTCTCGA
1 T-GCCGATGCATGTCCCAGACATGGTCTTACACTAGCACT-CATCTC-A
* *
45940630 GGCCGATGCATGTCCTAGACAT-GTCTTACACTAGCACTCATCTCAA
1 TGCCGATGCATGTCCCAGACATGGTCTTACACTAGCACTCATCTC-A
* * * * * * *
45940676 TGCTGATGCCATGTCCCAAACATGGTATTACACTGGCTCTCATAAT-G
1 TGCCGATG-CATGTCCCAGACATGGTCTTACACTAGCACTCAT-CTCA
*
45940723 TGGCCGATGCATGTCCCAAACAT-GTCTTACAC
1 T-GCCGATGCATGTCCCAGACATGGTCTTACAC
45940755 CAGCTCACAA
Statistics
Matches: 137, Mismatches: 25, Indels: 19
0.76 0.14 0.10
Matches are distributed among these distances:
44 8 0.06
45 16 0.12
46 62 0.45
47 28 0.20
48 22 0.16
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (46 bp):
TGCCGATGCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCA
Found at i:45942058 original size:42 final size:43
Alignment explanation
Indices: 45941995--45942092 Score: 126
Period size: 42 Copynumber: 2.3 Consensus size: 43
45941985 GAAGTTTGAA
** * * *
45941995 CTCGTTGAGTGGTCCGGGTTCATGATATATGTGA-CATCTGAG
1 CTCGTTGAGTGGTCCAAGTTCATGATAGATGTGAGCACCCGAG
* *
45942037 CTCGTTGAGTGGTCCAAGTTCATTATGGATGTGAGCACCCGAG
1 CTCGTTGAGTGGTCCAAGTTCATGATAGATGTGAGCACCCGAG
45942080 CTCGTTGAGTGGT
1 CTCGTTGAGTGGT
45942093 TTGAGTTCAT
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 29 0.60
43 19 0.40
ACGTcount: A:0.18, C:0.18, G:0.32, T:0.32
Consensus pattern (43 bp):
CTCGTTGAGTGGTCCAAGTTCATGATAGATGTGAGCACCCGAG
Found at i:45943697 original size:19 final size:19
Alignment explanation
Indices: 45943673--45943709 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
45943663 TTACACGGTT
**
45943673 GGAGGACATTGGCGTGTCA
1 GGAGGACACCGGCGTGTCA
45943692 GGAGGACACCGGCGTGTC
1 GGAGGACACCGGCGTGTC
45943710 CCCTGTCTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.19, C:0.22, G:0.43, T:0.16
Consensus pattern (19 bp):
GGAGGACACCGGCGTGTCA
Found at i:45944839 original size:27 final size:28
Alignment explanation
Indices: 45944800--45944853 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
45944790 TGAGGATATT
45944800 AAGACATTAGTGGGTACTC-TTGAGTTGA
1 AAGACATTAGT-GGTACTCATTGAGTTGA
*
45944828 AAGA-ATTTGTGGTACTCATTGAGTTG
1 AAGACATTAGTGGTACTCATTGAGTTG
45944854 GCTTGTAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 7 0.29
27 13 0.54
28 4 0.17
ACGTcount: A:0.28, C:0.09, G:0.28, T:0.35
Consensus pattern (28 bp):
AAGACATTAGTGGTACTCATTGAGTTGA
Found at i:45955646 original size:10 final size:10
Alignment explanation
Indices: 45955631--45955656 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
45955621 AAACACTAAG
45955631 AGTTTGAATA
1 AGTTTGAATA
45955641 AGTTTGAATA
1 AGTTTGAATA
45955651 AGTTTG
1 AGTTTG
45955657 TTGCTAGCCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (10 bp):
AGTTTGAATA
Found at i:45961116 original size:42 final size:42
Alignment explanation
Indices: 45961062--45961181 Score: 143
Period size: 43 Copynumber: 2.8 Consensus size: 42
45961052 TTAGTGTTAC
* **
45961062 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATTGATA
1 TGAGATTACGTGTAAGACCATACCTGGGATATGGCAACGATA
* * *
45961104 TGAGACTT-CGTGTAAAACCATAGCTGGGCTATTGGCAACGATA
1 TGAGA-TTACGTGTAAGACCATACCTGGGATA-TGGCAACGATA
* *
45961147 CGAGATTACATGTAAGACCATACCTGGGATATGGC
1 TGAGATTACGTGTAAGACCATACCTGGGATATGGC
45961182 TTGGGTACGG
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
42 31 0.48
43 34 0.52
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.27
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATACCTGGGATATGGCAACGATA
Found at i:45961331 original size:19 final size:19
Alignment explanation
Indices: 45961307--45961344 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
45961297 TTTGTACAGG
45961307 TATGTACATAAAGTTTATA
1 TATGTACATAAAGTTTATA
45961326 TATGTACATAAAGTTTATA
1 TATGTACATAAAGTTTATA
45961345 AGCATTGACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (19 bp):
TATGTACATAAAGTTTATA
Found at i:45962017 original size:18 final size:19
Alignment explanation
Indices: 45961994--45962029 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
45961984 GAAGAGTTTT
45961994 ATTG-AAAACCTTGCTTTC
1 ATTGAAAAACCTTGCTTTC
*
45962012 ATTGAAAAACCTTTCTTT
1 ATTGAAAAACCTTGCTTT
45962030 AAAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.31, C:0.19, G:0.08, T:0.42
Consensus pattern (19 bp):
ATTGAAAAACCTTGCTTTC
Found at i:45963333 original size:28 final size:29
Alignment explanation
Indices: 45963292--45963382 Score: 107
Period size: 29 Copynumber: 3.2 Consensus size: 29
45963282 AAGTCTACAT
*
45963292 ACATACATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
* * *
45963320 TCATTCATACGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
*
45963349 ACATTCATATGGCCCATCT-GGCCCGAATC
1 ACATTCATATGGCCCA-CTAGGCCCAAATC
45963378 A-ATTC
1 ACATTC
45963383 CAAGCCATGT
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
28 24 0.45
29 28 0.53
30 1 0.02
ACGTcount: A:0.29, C:0.34, G:0.14, T:0.23
Consensus pattern (29 bp):
ACATTCATATGGCCCACTAGGCCCAAATC
Found at i:45968099 original size:40 final size:40
Alignment explanation
Indices: 45968043--45968125 Score: 130
Period size: 40 Copynumber: 2.1 Consensus size: 40
45968033 TATTCGGATG
* * *
45968043 ATATCCGGACTCAGATCCGAAGGCATTTGTGCTAGTTACT
1 ATATCCGGAATAAGATCCGAAGGCAATTGTGCTAGTTACT
*
45968083 ATATCCGGAATAAGATCCGAAGGCAATTGTGCTAGTTATT
1 ATATCCGGAATAAGATCCGAAGGCAATTGTGCTAGTTACT
45968123 ATA
1 ATA
45968126 ACTAGGTTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (40 bp):
ATATCCGGAATAAGATCCGAAGGCAATTGTGCTAGTTACT
Found at i:45968146 original size:40 final size:40
Alignment explanation
Indices: 45968059--45968195 Score: 127
Period size: 40 Copynumber: 3.4 Consensus size: 40
45968049 GGACTCAGAT
* * * * *
45968059 CCGAAGGCATTTGTGCTAGTTACTATATCC-GGAATAAGAT-
1 CCGAAGGCATTCGTGCTAGCTATTATAACCAGG-TTAAG-TC
* *
45968099 CCGAAGGCAATT-GTGCTAGTTATTATAACTAGGTTAAGTC
1 CCGAAGGC-ATTCGTGCTAGCTATTATAACCAGGTTAAGTC
* ** *
45968139 CCTAAGGCATTCGTGCGGGCTATTATAACCGGGTTAAGTC
1 CCGAAGGCATTCGTGCTAGCTATTATAACCAGGTTAAGTC
45968179 CCGAAGGCATTCGTGCT
1 CCGAAGGCATTCGTGCT
45968196 GGTTGTTACA
Statistics
Matches: 81, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
39 4 0.05
40 72 0.89
41 5 0.06
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCTAGCTATTATAACCAGGTTAAGTC
Found at i:45976245 original size:40 final size:40
Alignment explanation
Indices: 45976183--45976265 Score: 121
Period size: 40 Copynumber: 2.1 Consensus size: 40
45976173 TATTTGGATG
* * *
45976183 ATATCCGGACTCAGATCTGAAGGCATTTGTGCTAGTTACT
1 ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTACT
* *
45976223 ATATTCGGACTAAGATCCGAAGGCAATTGTGCTAGTTATT
1 ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTACT
45976263 ATA
1 ATA
45976266 ATTGGGTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.33
Consensus pattern (40 bp):
ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTACT
Found at i:45976283 original size:40 final size:40
Alignment explanation
Indices: 45976195--45976315 Score: 113
Period size: 40 Copynumber: 3.0 Consensus size: 40
45976185 ATCCGGACTC
* * * **
45976195 AGATCTGAAGGCATTTGTGCTAGTTACTAT-ATTCGGACTA
1 AGATCCGAAGGCAATTGTGCTAGTTATTATAATT-GGGTTA
45976235 AGATCCGAAGGCAATTGTGCTAGTTATTATAATTGGGTTA
1 AGATCCGAAGGCAATTGTGCTAGTTATTATAATTGGGTTA
** **
45976275 AG-TCCCGAAGGC-ATTCGTGCGGGTTATTATAACCGGGTTA
1 AGAT-CCGAAGGCAATT-GTGCTAGTTATTATAATTGGGTTA
45976315 A
1 A
45976316 ATTCTCTGAG
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
39 4 0.06
40 62 0.90
41 3 0.04
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (40 bp):
AGATCCGAAGGCAATTGTGCTAGTTATTATAATTGGGTTA
Found at i:45978512 original size:24 final size:24
Alignment explanation
Indices: 45978484--45978543 Score: 93
Period size: 24 Copynumber: 2.5 Consensus size: 24
45978474 TAAATACCAA
* *
45978484 TCCAACCTTGCACTCCGTATCCCT
1 TCCAACCCTACACTCCGTATCCCT
*
45978508 TCCAACCCTACACTCTGTATCCCT
1 TCCAACCCTACACTCCGTATCCCT
45978532 TCCAACCCTACA
1 TCCAACCCTACA
45978544 GTCGTCAAGC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.22, C:0.47, G:0.05, T:0.27
Consensus pattern (24 bp):
TCCAACCCTACACTCCGTATCCCT
Found at i:45979097 original size:29 final size:29
Alignment explanation
Indices: 45979018--45979102 Score: 88
Period size: 29 Copynumber: 3.0 Consensus size: 29
45979008 ACATACATGG
* *
45979018 ATATGGCCCA-CTAGGTCCAATCTCATTC
1 ATATGGCCCATCTAGGCCCAATCACATTC
* *
45979046 ATACGGCCCAT-TAGGCCTAAATCACATTC
1 ATATGGCCCATCTAGGCC-CAATCACATTC
45979075 ATATGGCCCATCT-GGCCCGAATCA-ATTC
1 ATATGGCCCATCTAGGCCC-AATCACATTC
45979103 CAAGCCATGT
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
28 18 0.38
29 28 0.60
30 1 0.02
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (29 bp):
ATATGGCCCATCTAGGCCCAATCACATTC
Found at i:45979229 original size:20 final size:20
Alignment explanation
Indices: 45979204--45979251 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
45979194 GCCCATTCTA
45979204 GCCCAGATGGCCTAAGTACG
1 GCCCAGATGGCCTAAGTACG
45979224 GCCCAGATGGCCTAAGTACG
1 GCCCAGATGGCCTAAGTACG
45979244 GCCCAGAT
1 GCCCAGAT
45979252 CCATGAGATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.25, C:0.31, G:0.29, T:0.15
Consensus pattern (20 bp):
GCCCAGATGGCCTAAGTACG
Found at i:45986745 original size:18 final size:18
Alignment explanation
Indices: 45986707--45986770 Score: 85
Period size: 18 Copynumber: 3.6 Consensus size: 18
45986697 CAACGATATG
*
45986707 CAATCTTATATATGA-TA
1 CAATCTTAGATATGATTA
45986724 CAATCTTAGATATGATTA
1 CAATCTTAGATATGATTA
* *
45986742 CAATCTTAGGTATGATATG
1 CAATCTTAGATATGAT-TA
45986761 CAATCTTAGA
1 CAATCTTAGA
45986771 AGATATGATT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
17 14 0.34
18 17 0.41
19 10 0.24
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (18 bp):
CAATCTTAGATATGATTA
Found at i:45986777 original size:17 final size:19
Alignment explanation
Indices: 45986701--45986770 Score: 92
Period size: 17 Copynumber: 3.8 Consensus size: 19
45986691 AATCTTCAAC
*
45986701 GATATGCAATCTTATATAT
1 GATATGCAATCTTAGATAT
45986720 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
45986737 GAT-TACAATCTTAGGTAT
1 GATATGCAATCTTAGATAT
45986755 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
45986771 AGATATGATT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
17 15 0.34
18 15 0.34
19 14 0.32
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:45986806 original size:21 final size:23
Alignment explanation
Indices: 45986762--45986806 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
45986752 TATGATATGC
*
45986762 AATCTTAGAAGATATGATTTTGT
1 AATCTTAGAAGATATGAATTTGT
*
45986785 AATCTTA-AAGAT-TTAATTTGT
1 AATCTTAGAAGATATGAATTTGT
45986806 A
1 A
45986807 GATGCCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 5 0.25
23 7 0.35
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (23 bp):
AATCTTAGAAGATATGAATTTGT
Found at i:45988220 original size:12 final size:12
Alignment explanation
Indices: 45988205--45988229 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45988195 TAACACTCGA
45988205 TTTAAAAATGGT
1 TTTAAAAATGGT
45988217 TTTAAAAATGGT
1 TTTAAAAATGGT
45988229 T
1 T
45988230 ACGACAGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (12 bp):
TTTAAAAATGGT
Found at i:45992452 original size:7 final size:7
Alignment explanation
Indices: 45992435--45992489 Score: 62
Period size: 7 Copynumber: 7.9 Consensus size: 7
45992425 TCTATTTCAA
45992435 AAAAAAGG
1 AAAAAA-G
45992443 AAAAAAG
1 AAAAAAG
45992450 --AAAAG
1 AAAAAAG
45992455 AAAAAGAG
1 AAAAA-AG
45992463 AAAAAA-
1 AAAAAAG
45992469 AGAAAAAG
1 A-AAAAAG
45992477 AAAAAAG
1 AAAAAAG
45992484 AAAAAA
1 AAAAAA
45992490 TGGAGAGGCC
Statistics
Matches: 42, Mismatches: 0, Indels: 11
0.79 0.00 0.21
Matches are distributed among these distances:
5 5 0.12
6 1 0.02
7 22 0.52
8 14 0.33
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:45992453 original size:6 final size:6
Alignment explanation
Indices: 45992444--45992488 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
45992434 AAAAAAAGGA
*
45992444 AAAAAG -AAAAG AAAAAG -AGAA- AAAAAG AAAAAG AAAAAAG AAAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG -AAAAAG AAAAA
45992489 ATGGAGAGGC
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
5 11 0.33
6 16 0.48
7 6 0.18
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:45992468 original size:22 final size:21
Alignment explanation
Indices: 45992435--45992489 Score: 85
Period size: 21 Copynumber: 2.6 Consensus size: 21
45992425 TCTATTTCAA
*
45992435 AAAAAAGGAAAAAAG-AAAAG
1 AAAAAAGAAAAAAAGAAAAAG
45992455 AAAAAGAGAAAAAAAGAAAAAG
1 AAAAA-AGAAAAAAAGAAAAAG
45992477 AAAAAAGAAAAAA
1 AAAAAAGAAAAAA
45992490 TGGAGAGGCC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
20 5 0.16
21 17 0.53
22 10 0.31
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (21 bp):
AAAAAAGAAAAAAAGAAAAAG
Found at i:45992469 original size:16 final size:15
Alignment explanation
Indices: 45992433--45992482 Score: 59
Period size: 16 Copynumber: 3.4 Consensus size: 15
45992423 CTTCTATTTC
*
45992433 AAAAAAAAG-GAAA-
1 AAAAAAAAGAAAAAG
*
45992446 AAAGAAAAGAAAAAG
1 AAAAAAAAGAAAAAG
45992461 AGAAAAAAAGAAAAAG
1 A-AAAAAAAGAAAAAG
45992477 AAAAAA
1 AAAAAA
45992483 GAAAAAATGG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
13 8 0.26
14 3 0.10
15 6 0.19
16 14 0.45
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (15 bp):
AAAAAAAAGAAAAAG
Found at i:45992481 original size:13 final size:13
Alignment explanation
Indices: 45992444--45992488 Score: 56
Period size: 13 Copynumber: 3.4 Consensus size: 13
45992434 AAAAAAAGGA
45992444 AAAAAGAAAAGAA-
1 AAAAAGAAAA-AAG
*
45992457 AAAGAGAAAAAAAG
1 AAAAAG-AAAAAAG
45992471 AAAAAGAAAAAAG
1 AAAAAGAAAAAAG
45992484 AAAAA
1 AAAAA
45992489 ATGGAGAGGC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 19 0.68
14 9 0.32
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAAAAG
Found at i:45993658 original size:89 final size:87
Alignment explanation
Indices: 45993530--45993690 Score: 198
Period size: 89 Copynumber: 1.8 Consensus size: 87
45993520 TTCGACGGAT
* * *
45993530 AGCAAATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGA
1 AGCAAATCGAAGACATAGCAGATCTAACCTTCCGATGTTTACAC-T-GAAGCAGATCCAAGATGA
*
45993595 TTTGGCATCCTTGCGTTTACAAGG
64 TATGGCATCCTTGCGTTTACAAGG
* * ** * *
45993619 AGCAGATCGAAGACATAGCAGATTTGGCTTTCACG-TGTTTACACTGAAGCAGATCTAAGATGAT
1 AGCAAATCGAAGACATAGCAGATCTAACCTTC-CGATGTTTACACTGAAGCAGATCCAAGATGAT
45993683 ATGGCATC
65 ATGGCATC
45993691 TCTGTACTGT
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
87 24 0.39
88 1 0.02
89 35 0.57
90 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (87 bp):
AGCAAATCGAAGACATAGCAGATCTAACCTTCCGATGTTTACACTGAAGCAGATCCAAGATGATA
TGGCATCCTTGCGTTTACAAGG
Found at i:45993825 original size:78 final size:78
Alignment explanation
Indices: 45993723--45994173 Score: 726
Period size: 78 Copynumber: 5.8 Consensus size: 78
45993713 CAAAGAAACA
* * * *
45993723 GATTTGGCATCTCCATATTTGACGGAGAGCAGATCGAAGACATAGTAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
45993788 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
45993801 AATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGATCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
45993866 GCAGATCCAAGAT
66 GCAGATCCAAGAT
*
45993879 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
45993943 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * *
45993957 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGATCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
45994022 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
45994035 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
45994099 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* *
45994113 GATTTGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
45994174 GTGTTTACAT
Statistics
Matches: 347, Mismatches: 22, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
77 2 0.01
78 343 0.99
79 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:45995869 original size:56 final size:55
Alignment explanation
Indices: 45995807--45995989 Score: 235
Period size: 56 Copynumber: 3.3 Consensus size: 55
45995797 GAGATTGGCG
* *
45995807 CTAAGTGTGCGGGTTTAAATTGTGCAGCACTAAGTGTGCGA-ATTGACTATGTAGCA
1 CTAAGTGTGCGAGTTT-AATTGTG-AGCACTAAGTGTGCGAGTTTGACTATGTAGCA
*
45995863 CTAAGTGTGCGAGTTTGACTATGT-AGCACTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTT-AAT-TGTGAGCACTAAGTGTGCGAGTTTGACTATGTAGCA
* * * * *
45995919 CTAAGTGTGCGAGCTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAATTGTG-AGCACTAAGTGTGCGAGTTTGACTATGTAGCA
45995975 CTAAGTGTGCGAGTT
1 CTAAGTGTGCGAGTT
45995990 GATTATATAG
Statistics
Matches: 112, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
54 2 0.02
55 17 0.15
56 90 0.80
57 3 0.03
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (55 bp):
CTAAGTGTGCGAGTTTAATTGTGAGCACTAAGTGTGCGAGTTTGACTATGTAGCA
Found at i:45995889 original size:28 final size:28
Alignment explanation
Indices: 45995832--45996012 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
45995822 TAAATTGTGC
*
45995832 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
45995859 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
45995887 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
45995915 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
45995943 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
45995971 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
45995998 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
45996013 GACTTATTAT
Statistics
Matches: 147, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
27 40 0.27
28 107 0.73
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:45997671 original size:44 final size:45
Alignment explanation
Indices: 45997552--45997716 Score: 201
Period size: 45 Copynumber: 3.7 Consensus size: 45
45997542 GGGCTGTTAC
* * *
45997552 ATTAGACGGGGAGCAAATC-AGAGATAACAAATTTGGCATCTCTGT
1 ATTAGACGGGGAGCAGATCGA-AGATAACAGATTTGGCGTCTCTGT
* *
45997597 ATTAGACGGGGAGCAGATTGAAGA-AGCAGATTTGGCGTCTCTG-
1 ATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGT
*
45997640 ATTAGAAGGGGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGT
1 ATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGT
* * * * *
45997685 ATTAGATGGAGAGCATATCAAAGATAGCAGAT
1 ATTAGACGGGGAGCAGATCGAAGATAACAGAT
45997717 ATCGCCTTCC
Statistics
Matches: 104, Mismatches: 13, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
43 22 0.21
44 34 0.33
45 47 0.45
46 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.29, T:0.24
Consensus pattern (45 bp):
ATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGT
Found at i:45998106 original size:18 final size:18
Alignment explanation
Indices: 45998068--45998131 Score: 94
Period size: 18 Copynumber: 3.6 Consensus size: 18
45998058 CAATGATATG
45998068 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
45998085 CAATCTTAGATATGATTA
1 CAATCTTAGATATGATTA
* *
45998103 CAATCTTAGGTATGATATG
1 CAATCTTAGATATGAT-TA
45998122 CAATCTTAGA
1 CAATCTTAGA
45998132 AGATATGATT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
17 15 0.36
18 17 0.40
19 10 0.24
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (18 bp):
CAATCTTAGATATGATTA
Found at i:45998138 original size:17 final size:19
Alignment explanation
Indices: 45998060--45998131 Score: 105
Period size: 17 Copynumber: 3.9 Consensus size: 19
45998050 ATAATCTTCA
45998060 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
45998079 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
* *
45998096 ATGAT-TACAATCTTAGGT
1 ATGATATGCAATCTTAGAT
45998114 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
45998132 AGATATGATT
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
17 16 0.34
18 15 0.32
19 16 0.34
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:45999586 original size:12 final size:12
Alignment explanation
Indices: 45999571--45999595 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45999561 TAAAACTCAA
45999571 TTTAAAAATGGT
1 TTTAAAAATGGT
45999583 TTTAAAAATGGT
1 TTTAAAAATGGT
45999595 T
1 T
45999596 ACCACAGCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (12 bp):
TTTAAAAATGGT
Found at i:46001207 original size:18 final size:18
Alignment explanation
Indices: 46001184--46001248 Score: 51
Period size: 18 Copynumber: 3.3 Consensus size: 18
46001174 ACTCTACTTT
46001184 TATCTTATTCTTTATGCA
1 TATCTTATTCTTTATGCA
*
46001202 TATCTTTTATATTAACTTTACG-A
1 TATC---T-TATT--CTTTATGCA
*
46001225 TGTCTTATTCTTTATGCA
1 TATCTTATTCTTTATGCA
46001243 TATCTT
1 TATCTT
46001249 TTATATCAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 14
0.67 0.07 0.26
Matches are distributed among these distances:
17 6 0.17
18 10 0.28
19 4 0.11
20 1 0.03
21 1 0.03
22 4 0.11
23 4 0.11
24 6 0.17
ACGTcount: A:0.23, C:0.15, G:0.06, T:0.55
Consensus pattern (18 bp):
TATCTTATTCTTTATGCA
Found at i:46004533 original size:25 final size:25
Alignment explanation
Indices: 46004499--46004547 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
46004489 TGTAGAGAAA
46004499 AAATTCTCTAAAGAAATTATTTTAG
1 AAATTCTCTAAAGAAATTATTTTAG
* * *
46004524 AAATTTTCTAAAGATATTTTTTTA
1 AAATTCTCTAAAGAAATTATTTTA
46004548 TTTACAACTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (25 bp):
AAATTCTCTAAAGAAATTATTTTAG
Found at i:46010922 original size:105 final size:105
Alignment explanation
Indices: 46010765--46011331 Score: 989
Period size: 105 Copynumber: 5.4 Consensus size: 105
46010755 ATGCAGAAGG
46010765 ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTA
1 ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTA
46010830 AATTAAAATAAAATAAAATATTTAAAATAAAACTTTAAAT
66 AATTAAAATAAAATAAAATATTTAAAATAAAACTTTAAAT
*
46010870 ACAATTTAATTTAATTAGGTAATTTAACAATAAAACAAAAGTAAACAAAATATTTTTCGTGATTA
1 ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTA
46010935 AATT-AAA-AAAATAAAATATTTAAAATAAAACTTTAAAT
66 AATTAAAATAAAATAAAATATTTAAAATAAAACTTTAAAT
46010973 ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTA
1 ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTA
46011038 AATTAAAATAAAATAAAATATTTAAAATAAAACTTTAAAT
66 AATTAAAATAAAATAAAATATTTAAAATAAAACTTTAAAT
*
46011078 ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTTATTA
1 ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTA
*
46011143 AATTAAAATAACAT-AAATATTTAAAATAAAACTTTAAAT
66 AATTAAAATAAAATAAAATATTTAAAATAAAACTTTAAAT
* * *
46011182 ATAATTTAATTTAATTAGGTGATTTAAAAATAAAATAAAAGTAGAA-AAAATATTTTTCGTGATT
1 ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTA-AACAAAATATTTTTCGTGATT
46011246 AAATTAAAATAAAATAAAATAACATATTCAAAATAAAACTTTAAAT
65 AAATTAAAATAAAATAAAAT---AT-TT-AAAATAAAACTTTAAAT
*
46011292 ACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAA
1 ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAA
46011332 TATTTAAAAT
Statistics
Matches: 442, Mismatches: 11, Indels: 13
0.95 0.02 0.03
Matches are distributed among these distances:
103 99 0.22
104 102 0.23
105 182 0.41
108 2 0.00
109 2 0.00
110 55 0.12
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (105 bp):
ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTA
AATTAAAATAAAATAAAATATTTAAAATAAAACTTTAAAT
Found at i:46011123 original size:208 final size:209
Alignment explanation
Indices: 46010765--46011331 Score: 996
Period size: 208 Copynumber: 2.7 Consensus size: 209
46010755 ATGCAGAAGG
46010765 ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTA
1 ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTA
46010830 AATTAAAATAAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTT
66 AATTAAAATAAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTT
*
46010895 AACAATAAAACAAAAGTAAACAAAATATTTTTCGTGATTAAATTAAAA-AA-ATAAAATATTTAA
131 AACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTAAATTAAAATAACAT-AAATATTTAA
46010958 AATAAAACTTTAAAT
195 AATAAAACTTTAAAT
46010973 ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTA
1 ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTA
46011038 AATTAAAATAAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTT
66 AATTAAAATAAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTT
*
46011103 AACAATAAAATAAAAGTAAACAAAATATTTTTCGTTATTAAATTAAAATAACATAAATATTTAAA
131 AACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTAAATTAAAATAACATAAATATTTAAA
46011168 ATAAAACTTTAAAT
196 ATAAAACTTTAAAT
* * *
46011182 ATAATTTAATTTAATTAGGTGATTTAAAAATAAAATAAAAGTAGAA-AAAATATTTTTCGTGATT
1 ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTA-AACAAAATATTTTTCGTGATT
46011246 AAATTAAAATAAAATAAAATAACATATTCAAAATAAAACTTTAAATACAATTTAATTTAATTAGG
65 AAATTAAAATAAAATAAAAT---AT-TT-AAAATAAAACTTTAAATACAATTTAATTTAATTAGG
*
46011311 TAATTTAAAAATAAAATAAAA
125 TAATTTAACAATAAAATAAAA
46011332 TATTTAAAAT
Statistics
Matches: 345, Mismatches: 6, Indels: 10
0.96 0.02 0.03
Matches are distributed among these distances:
208 176 0.51
209 105 0.30
210 4 0.01
212 2 0.01
213 2 0.01
214 56 0.16
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (209 bp):
ACAATTTAATTTAATTAGGTAATTTAACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTA
AATTAAAATAAAATAAAATATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTT
AACAATAAAATAAAAGTAAACAAAATATTTTTCGTGATTAAATTAAAATAACATAAATATTTAAA
ATAAAACTTTAAAT
Found at i:46014511 original size:15 final size:15
Alignment explanation
Indices: 46014477--46014515 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
46014467 CATATCCCCA
*
46014477 AAACCCCTAAACCAT
1 AAACCCTTAAACCAT
*
46014492 AAACCCTTAAACCCT
1 AAACCCTTAAACCAT
*
46014507 TAACCCTTA
1 AAACCCTTA
46014516 TCCTTAACTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.41, C:0.38, G:0.00, T:0.21
Consensus pattern (15 bp):
AAACCCTTAAACCAT
Found at i:46014550 original size:14 final size:14
Alignment explanation
Indices: 46014534--46014752 Score: 71
Period size: 14 Copynumber: 15.0 Consensus size: 14
46014524 TCTTGACCCC
* *
46014534 TAAACCATAAACCC
1 TAAACCCTAAACCA
*
46014548 TAAA-CCTCAACCA
1 TAAACCCTAAACCA
* *
46014561 TTAAACCATAAACAA
1 -TAAACCCTAAACCA
* **
46014576 TAATCCCTAGATTCA
1 TAAACCCTA-AACCA
* * *
46014591 TAATCCATAATCCA
1 TAAACCCTAAACCA
* **
46014605 TAAACCTTAAAATA
1 TAAACCCTAAACCA
* *
46014619 TTAACTCATAAACCA
1 TAAAC-CCTAAACCA
* *
46014634 GAAACCCTTAAACCT
1 TAAACCC-TAAACCA
* *
46014649 TAAACCTTAAACCT
1 TAAACCCTAAACCA
*
46014663 TAAACCCTAAACCT
1 TAAACCCTAAACCA
* *
46014677 TAAACCCATAATCCC
1 TAAACCC-TAAACCA
* **
46014692 TAAATCCATAGTCCA
1 TAAA-CCCTAAACCA
* **
46014707 TAAACCTTAAAATA
1 TAAACCCTAAACCA
*
46014721 TTAACTCATCATAAACCA
1 TAAAC-C--C-TAAACCA
46014739 TAAACCCTAAACCA
1 TAAACCCTAAACCA
46014753 CATACCCGGC
Statistics
Matches: 150, Mismatches: 44, Indels: 22
0.69 0.20 0.10
Matches are distributed among these distances:
13 6 0.04
14 76 0.51
15 56 0.37
16 2 0.01
17 1 0.01
18 9 0.06
ACGTcount: A:0.46, C:0.29, G:0.01, T:0.24
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:46014572 original size:7 final size:7
Alignment explanation
Indices: 46014534--46014717 Score: 82
Period size: 7 Copynumber: 25.6 Consensus size: 7
46014524 TCTTGACCCC
46014534 TAAACCA
1 TAAACCA
*
46014541 TAAACCC
1 TAAACCA
46014548 TAAACC-
1 TAAACCA
*
46014554 TCAACCA
1 TAAACCA
46014561 TTAAACCA
1 -TAAACCA
*
46014569 TAAACAA
1 TAAACCA
* *
46014576 TAATCCC
1 TAAACCA
**
46014583 TAGATTCA
1 TA-AACCA
*
46014591 TAATCCA
1 TAAACCA
*
46014598 TAATCCA
1 TAAACCA
*
46014605 TAAACCT
1 TAAACCA
**
46014612 TAAAATA
1 TAAACCA
*
46014619 TTAACTCA
1 TAAAC-CA
46014627 TAAACCA
1 TAAACCA
* *
46014634 GAAACCCT
1 TAAA-CCA
*
46014642 TAAACCT
1 TAAACCA
*
46014649 TAAACCT
1 TAAACCA
*
46014656 TAAACCT
1 TAAACCA
*
46014663 TAAACCC
1 TAAACCA
*
46014670 TAAACCT
1 TAAACCA
46014677 TAAACCCA
1 TAAA-CCA
* *
46014685 TAATCCC
1 TAAACCA
46014692 TAAATCCA
1 TAAA-CCA
**
46014700 TAGTCCA
1 TAAACCA
*
46014707 TAAACCT
1 TAAACCA
46014714 TAAA
1 TAAA
46014718 ATATTAACTC
Statistics
Matches: 136, Mismatches: 34, Indels: 14
0.74 0.18 0.08
Matches are distributed among these distances:
6 5 0.04
7 101 0.74
8 30 0.22
ACGTcount: A:0.46, C:0.29, G:0.02, T:0.24
Consensus pattern (7 bp):
TAAACCA
Found at i:46016756 original size:21 final size:21
Alignment explanation
Indices: 46016732--46016778 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
46016722 ATTAACGTGA
46016732 GTGTTGGGTCTTTGGTACGGC
1 GTGTTGGGTCTTTGGTACGGC
*
46016753 GTGTTGGGTCTTTGGTAGGGC
1 GTGTTGGGTCTTTGGTACGGC
*
46016774 ATGTT
1 GTGTT
46016779 AGTTGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.06, C:0.11, G:0.43, T:0.40
Consensus pattern (21 bp):
GTGTTGGGTCTTTGGTACGGC
Found at i:46019072 original size:26 final size:26
Alignment explanation
Indices: 46019043--46019150 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
46019033 TGGTACAAAT
46019043 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
46019069 TGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
46019095 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
46019121 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
46019147 TGAT
1 TGAT
46019151 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:46022793 original size:45 final size:45
Alignment explanation
Indices: 46022744--46022834 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
46022734 AGAGGTGTCT
46022744 AATTGTTATGAAATTTTAAATTGGAGGCCCTTAAATGGTAATTAG
1 AATTGTTATGAAATTTTAAATTGGAGGCCCTTAAATGGTAATTAG
46022789 AATTGTTATGAAATTTTAAATTGGAGGCCCTTAAATGGTAATTAG
1 AATTGTTATGAAATTTTAAATTGGAGGCCCTTAAATGGTAATTAG
46022834 A
1 A
46022835 CCATTGGATA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.36, C:0.07, G:0.20, T:0.37
Consensus pattern (45 bp):
AATTGTTATGAAATTTTAAATTGGAGGCCCTTAAATGGTAATTAG
Found at i:46023419 original size:18 final size:18
Alignment explanation
Indices: 46023396--46023431 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
46023386 TTGGGGAAAA
46023396 GTGCAAATATGTGAAATT
1 GTGCAAATATGTGAAATT
46023414 GTGCAAATATGTGAAATT
1 GTGCAAATATGTGAAATT
46023432 TAGGGGTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.22, T:0.33
Consensus pattern (18 bp):
GTGCAAATATGTGAAATT
Found at i:46024043 original size:42 final size:44
Alignment explanation
Indices: 46023985--46024089 Score: 124
Period size: 44 Copynumber: 2.4 Consensus size: 44
46023975 TTTGAACTTA
* * * **
46023985 TTGAGTGGTCCAAGTTCGT-G-ATCTATGTGGCATCCGAGCTCG
1 TTGAGAGGTCCAAGTTCATCGCATCCATGTAACATCCGAGCTCG
* *
46024027 TTGAGAGGTCCAAGTTCATCGCATCCATTTAACATTCGAGCTCG
1 TTGAGAGGTCCAAGTTCATCGCATCCATGTAACATCCGAGCTCG
*
46024071 TTGAGAGGTCCGAGTTCAT
1 TTGAGAGGTCCAAGTTCAT
46024090 TATAGATGTA
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 17 0.32
43 1 0.02
44 35 0.66
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (44 bp):
TTGAGAGGTCCAAGTTCATCGCATCCATGTAACATCCGAGCTCG
Found at i:46026161 original size:24 final size:24
Alignment explanation
Indices: 46026134--46026187 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 24
46026124 TTTATTTTCA
*
46026134 TTTTTTGAA-TTATATATATTAAT
1 TTTTTTTAAGTTATATATATTAAT
* * **
46026157 TTTTTATAAGTTTTATATATTTCT
1 TTTTTTTAAGTTATATATATTAAT
46026181 TTTTTTT
1 TTTTTTT
46026188 TTCCTAAAAA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
23 7 0.29
24 17 0.71
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.69
Consensus pattern (24 bp):
TTTTTTTAAGTTATATATATTAAT
Found at i:46026885 original size:18 final size:18
Alignment explanation
Indices: 46026849--46026883 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
46026839 TATTTTAAAA
46026849 ATATTTATAATAATTTTT
1 ATATTTATAATAATTTTT
*
46026867 ATATTTTTAA-AATTTTT
1 ATATTTATAATAATTTTT
46026884 TAGAATTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
ATATTTATAATAATTTTT
Found at i:46029930 original size:15 final size:15
Alignment explanation
Indices: 46029873--46029930 Score: 55
Period size: 16 Copynumber: 3.7 Consensus size: 15
46029863 TTTTGCCTGT
46029873 GTGTTTTTAGGGTTA
1 GTGTTTTTAGGGTTA
*
46029888 GGGTTTTTTAGGGTTTA
1 GTG-TTTTTAGGG-TTA
* *
46029905 AT-TGATTTAGGGTTA
1 GTGT-TTTTAGGGTTA
46029920 GTGTTTTTAGG
1 GTGTTTTTAGG
46029931 ATTTAAGGTT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
15 13 0.39
16 17 0.52
17 3 0.09
ACGTcount: A:0.16, C:0.00, G:0.33, T:0.52
Consensus pattern (15 bp):
GTGTTTTTAGGGTTA
Found at i:46029972 original size:16 final size:16
Alignment explanation
Indices: 46029932--46029972 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
46029922 GTTTTTAGGA
46029932 TTTAAGGTTAGGGTTT
1 TTTAAGGTTAGGGTTT
* *
46029948 GTTAAGGTTATGGTTT
1 TTTAAGGTTAGGGTTT
*
46029964 TTTAGGGTT
1 TTTAAGGTT
46029973 TAAAATTTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.17, C:0.00, G:0.32, T:0.51
Consensus pattern (16 bp):
TTTAAGGTTAGGGTTT
Found at i:46046172 original size:24 final size:24
Alignment explanation
Indices: 46046145--46046191 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
46046135 ACGTATCTCC
*
46046145 TCATCTC-TATCACTTCATATCAGT
1 TCATCTCATATCA-TACATATCAGT
46046169 TCATCTCATATCATACATATCAG
1 TCATCTCATATCATACATATCAG
46046192 AAGCAGATGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.30, C:0.28, G:0.04, T:0.38
Consensus pattern (24 bp):
TCATCTCATATCATACATATCAGT
Found at i:46053147 original size:22 final size:21
Alignment explanation
Indices: 46053105--46053149 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
46053095 GGCCCGGCCT
* **
46053105 ATTTTTTAATAAATACCAAAA
1 ATTTTTTAAAAAATAAAAAAA
46053126 ATTTATTTAAAAAATAAAAAAA
1 ATTT-TTTAAAAAATAAAAAAA
46053148 AT
1 AT
46053150 AAAAAATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (21 bp):
ATTTTTTAAAAAATAAAAAAA
Found at i:46058097 original size:27 final size:26
Alignment explanation
Indices: 46058067--46058270 Score: 192
Period size: 27 Copynumber: 7.5 Consensus size: 26
46058057 AAATTGTACA
46058067 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTT
* *
46058094 GCACTAAGTGTGCGAAATGAATATGTT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* * *
46058121 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* **
46058148 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTT
*
46058175 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTT
* * *
46058203 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTT
* * *
46058230 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTT
*
46058257 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
46058271 GGCTCAATAT
Statistics
Matches: 154, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.01
27 128 0.83
28 25 0.16
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTT
Found at i:46058127 original size:54 final size:53
Alignment explanation
Indices: 46058067--46058270 Score: 221
Period size: 54 Copynumber: 3.8 Consensus size: 53
46058057 AAATTGTACA
* * *
46058067 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGTT
1 GCACTAAGTGTGCGATT-GACTATGTAGCACTAAGTGTGCGAATTGAATATGTG
* * ** *
46058121 GCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTA-GCACTAAGTGTGCGAATTGAATATGTG
* * *
46058175 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-T-TGACTATGTAGCACTAAGTGTGCGAATTGAATATGTG
* * *
46058230 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGA-TTGACTATGTAGCACTAAGTGTGCG
46058271 GGCTCAATAT
Statistics
Matches: 127, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
53 1 0.01
54 77 0.61
55 48 0.38
56 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (53 bp):
GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAATTGAATATGTG
Found at i:46058261 original size:109 final size:108
Alignment explanation
Indices: 46058067--46058270 Score: 284
Period size: 109 Copynumber: 1.9 Consensus size: 108
46058057 AAATTGTACA
* * * *
46058067 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
46058132 GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
** *
46058175 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
** * *
46058240 TGCGAGTTGATTAT-ATAGCACTGAGTGTGCG
65 TGCGAAATGAATATGAT-GCACTAAGTGTGCG
46058271 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
108 19 0.23
109 64 0.77
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (108 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
Found at i:46066157 original size:27 final size:26
Alignment explanation
Indices: 46066127--46066330 Score: 192
Period size: 27 Copynumber: 7.5 Consensus size: 26
46066117 AAATTGTACA
46066127 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTT
* *
46066154 GCACTAAGTGTGCGAAATGAATATGTT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* * *
46066181 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* **
46066208 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTT
*
46066235 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTT
* * *
46066263 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTT
* * *
46066290 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTT
*
46066317 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
46066331 GGCTCAATAT
Statistics
Matches: 154, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.01
27 128 0.83
28 25 0.16
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTT
Found at i:46066187 original size:54 final size:53
Alignment explanation
Indices: 46066127--46066330 Score: 221
Period size: 54 Copynumber: 3.8 Consensus size: 53
46066117 AAATTGTACA
* * *
46066127 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGTT
1 GCACTAAGTGTGCGATT-GACTATGTAGCACTAAGTGTGCGAATTGAATATGTG
* * ** *
46066181 GCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTA-GCACTAAGTGTGCGAATTGAATATGTG
* * *
46066235 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-T-TGACTATGTAGCACTAAGTGTGCGAATTGAATATGTG
* * *
46066290 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGA-TTGACTATGTAGCACTAAGTGTGCG
46066331 GGCTCAATAT
Statistics
Matches: 127, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
53 1 0.01
54 77 0.61
55 48 0.38
56 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (53 bp):
GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAATTGAATATGTG
Found at i:46066321 original size:109 final size:108
Alignment explanation
Indices: 46066127--46066330 Score: 284
Period size: 109 Copynumber: 1.9 Consensus size: 108
46066117 AAATTGTACA
* * * *
46066127 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
46066192 GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
** *
46066235 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
** * *
46066300 TGCGAGTTGATTAT-ATAGCACTGAGTGTGCG
65 TGCGAAATGAATATGAT-GCACTAAGTGTGCG
46066331 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
108 19 0.23
109 64 0.77
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (108 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCG
Found at i:46077434 original size:20 final size:20
Alignment explanation
Indices: 46077409--46077448 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
46077399 ACCGTCAGAG
46077409 TTAGAAAATATTCACAATGT
1 TTAGAAAATATTCACAATGT
46077429 TTAGAAAATATTCACAATGT
1 TTAGAAAATATTCACAATGT
46077449 ATTCCATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (20 bp):
TTAGAAAATATTCACAATGT
Found at i:46085606 original size:21 final size:22
Alignment explanation
Indices: 46085580--46085638 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
46085570 GTTTTAAGAA
*
46085580 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
46085601 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
46085623 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
46085639 GATTTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 10 0.31
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:46085653 original size:26 final size:24
Alignment explanation
Indices: 46085609--46085658 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
46085599 ATTTGTTTTA
*
46085609 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
46085633 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
46085659 TTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:46086590 original size:17 final size:18
Alignment explanation
Indices: 46086538--46086594 Score: 55
Period size: 18 Copynumber: 3.1 Consensus size: 18
46086528 TAATTAGGTT
*
46086538 AAATAATTAAATTAAATAGG
1 AAAT-ATTAAAATAAATA-G
*
46086558 AAATA-TCAAATAAA-ATG
1 AAATATTAAAATAAATA-G
46086575 AAATATTAAAATAAATAG
1 AAATATTAAAATAAATAG
46086593 AA
1 AA
46086595 TTAAAAATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
17 7 0.23
18 18 0.58
19 2 0.06
20 4 0.13
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (18 bp):
AAATATTAAAATAAATAG
Found at i:46086618 original size:21 final size:22
Alignment explanation
Indices: 46086593--46086638 Score: 60
Period size: 20 Copynumber: 2.1 Consensus size: 22
46086583 AAATAAATAG
46086593 AATTAAAAATTAAG-ATTT-AGA
1 AATT-AAAATTAAGAATTTGAGA
*
46086614 AATTAAAATTAGGAATTTGAGA
1 AATTAAAATTAAGAATTTGAGA
46086636 AAT
1 AAT
46086639 AATTCGATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 8 0.36
21 8 0.36
22 6 0.27
ACGTcount: A:0.54, C:0.00, G:0.13, T:0.33
Consensus pattern (22 bp):
AATTAAAATTAAGAATTTGAGA
Found at i:46089781 original size:51 final size:51
Alignment explanation
Indices: 46089690--46089789 Score: 121
Period size: 51 Copynumber: 2.0 Consensus size: 51
46089680 CCAAATATCT
** * *
46089690 GTTCATATGAAATAACAGTTTTTACCAAATGACAACTTATGTAAAATAATA
1 GTTCATATGAAATAACAGTTCATACCAAATAACAACTTATGCAAAATAATA
* * *
46089741 GTTCGTATGAAATATCAGTTCATA-CAGAATAACAATTTATGCAAAATAA
1 GTTCATATGAAATAACAGTTCATACCA-AATAACAACTTATGCAAAATAA
46089790 CAGTCTATGC
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
50 2 0.05
51 39 0.95
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.32
Consensus pattern (51 bp):
GTTCATATGAAATAACAGTTCATACCAAATAACAACTTATGCAAAATAATA
Found at i:46089885 original size:22 final size:23
Alignment explanation
Indices: 46089857--46089906 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
46089847 TGATTATGAA
*
46089857 ACATAT-AGAGGACTCTATCACT
1 ACATATAAGAGGACTCTATCACC
*
46089879 ACATATAAGTGGACTCTATCACC
1 ACATATAAGAGGACTCTATCACC
46089902 ACATA
1 ACATA
46089907 GTGGATAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 6 0.24
23 19 0.76
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.26
Consensus pattern (23 bp):
ACATATAAGAGGACTCTATCACC
Found at i:46090525 original size:17 final size:18
Alignment explanation
Indices: 46090505--46090542 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
46090495 TTTGACAAGT
* *
46090505 TAACATTGTTCAC-AATA
1 TAACATAGTACACAAATA
46090522 TAACATAGTACACAAATA
1 TAACATAGTACACAAATA
46090540 TAA
1 TAA
46090543 TTGGCTTGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.50, C:0.16, G:0.05, T:0.29
Consensus pattern (18 bp):
TAACATAGTACACAAATA
Found at i:46090854 original size:9 final size:9
Alignment explanation
Indices: 46090840--46090866 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
46090830 CCATATACAT
46090840 TTATATATA
1 TTATATATA
46090849 TTATATATA
1 TTATATATA
46090858 TTATATATA
1 TTATATATA
46090867 ATAAAATCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
TTATATATA
Found at i:46090913 original size:26 final size:28
Alignment explanation
Indices: 46090851--46090915 Score: 94
Period size: 29 Copynumber: 2.3 Consensus size: 28
46090841 TATATATATT
*
46090851 ATATATATTATATATAATAAAATCCACAC
1 ATATATATTATATATAACAAAA-CCACAC
* *
46090880 ATATATATTATATATAGCAAAACCACAT
1 ATATATATTATATATAACAAAACCACAC
46090908 ATATATAT
1 ATATATAT
46090916 GTACTATGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
28 13 0.39
29 20 0.61
ACGTcount: A:0.51, C:0.12, G:0.02, T:0.35
Consensus pattern (28 bp):
ATATATATTATATATAACAAAACCACAC
Found at i:46091009 original size:28 final size:24
Alignment explanation
Indices: 46090978--46091047 Score: 70
Period size: 26 Copynumber: 2.7 Consensus size: 24
46090968 ACACCGAAAT
46090978 ATATATTATATATAACACCCTTGCATGC
1 ATATATTATATATAA-ACCC-TG-AT-C
46091006 ATATA-TATATTATAAACCCTGATC
1 ATATATTATA-TATAAACCCTGATC
46091030 ATTTATATTATATATAAA
1 A--TATATTATATATAAA
46091048 TAACAAAACT
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
24 2 0.05
25 2 0.05
26 12 0.32
27 12 0.32
28 10 0.26
ACGTcount: A:0.41, C:0.14, G:0.04, T:0.40
Consensus pattern (24 bp):
ATATATTATATATAAACCCTGATC
Found at i:46091124 original size:18 final size:19
Alignment explanation
Indices: 46091088--46091125 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
46091078 ATACACATAC
*
46091088 CTTTTAGTACTTTAACTCA
1 CTTTTAATACTTTAACTCA
*
46091107 CTTTTAATA-TTTAGCTCA
1 CTTTTAATACTTTAACTCA
46091125 C
1 C
46091126 ACACAAACGC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.26, C:0.21, G:0.05, T:0.47
Consensus pattern (19 bp):
CTTTTAATACTTTAACTCA
Found at i:46097903 original size:48 final size:47
Alignment explanation
Indices: 46097849--46097958 Score: 166
Period size: 48 Copynumber: 2.3 Consensus size: 47
46097839 GTGCGATTGA
* * *
46097849 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTCTGGAGAGGAGT
1 TACCTTGATTTGGCTACGGGACATGGTATAGGTATTC-CGAGAGAAGT
* *
46097897 TACCTTGATTTGGTTACGGGACATGGTATAGGTATTCCGAGATAAGT
1 TACCTTGATTTGGCTACGGGACATGGTATAGGTATTCCGAGAGAAGT
46097944 TACCTTGATTTGGCT
1 TACCTTGATTTGGCT
46097959 TTAGACCATG
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
47 21 0.38
48 35 0.62
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.35
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGACATGGTATAGGTATTCCGAGAGAAGT
Found at i:46097969 original size:47 final size:48
Alignment explanation
Indices: 46097849--46097973 Score: 132
Period size: 47 Copynumber: 2.6 Consensus size: 48
46097839 GTGCGATTGA
*** * * *
46097849 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTCTGGAGAGGAGT
1 TACCTTGATTTGGCTTTAGACCATGGTATAGGTATTCTCGAGAGAAGT
*
46097897 TACCTTGATTTGG--TTACGGGA-CATGGTATAGGTATTC-CGAGATAAGT
1 TACCTTGATTTGGCTTTA---GACCATGGTATAGGTATTCTCGAGAGAAGT
46097944 TACCTTGATTTGGCTTTAGACCATGGTATA
1 TACCTTGATTTGGCTTTAGACCATGGTATA
46097974 TGTACTTATC
Statistics
Matches: 64, Mismatches: 7, Indels: 13
0.76 0.08 0.15
Matches are distributed among these distances:
46 2 0.03
47 29 0.45
48 29 0.45
49 4 0.06
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.34
Consensus pattern (48 bp):
TACCTTGATTTGGCTTTAGACCATGGTATAGGTATTCTCGAGAGAAGT
Found at i:46105049 original size:32 final size:30
Alignment explanation
Indices: 46104961--46105039 Score: 117
Period size: 28 Copynumber: 2.7 Consensus size: 30
46104951 TACGTGGGTG
* * *
46104961 ATTATACATATATTATATATGCATGGCTTT
1 ATTATATATATAATATATATGCATGGTTTT
46104991 ATT-T-TATATAATATATATGCATGGTTTT
1 ATTATATATATAATATATATGCATGGTTTT
46105019 ATTATATATATAATATATATG
1 ATTATATATATAATATATATG
46105040 GGTATGGTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
28 24 0.55
29 2 0.05
30 18 0.41
ACGTcount: A:0.37, C:0.05, G:0.09, T:0.49
Consensus pattern (30 bp):
ATTATATATATAATATATATGCATGGTTTT
Found at i:46105060 original size:32 final size:30
Alignment explanation
Indices: 46104932--46105063 Score: 112
Period size: 30 Copynumber: 4.4 Consensus size: 30
46104922 TATATATGTG
* * * *
46104932 TTATATATATACGTATATATACGTGG-GTGA
1 TTATATATATA-ATATATATGCATGGTTTGA
* *
46104962 TTATACATATATTATATATGCATGGCTTT-A
1 TTATATATATAATATATATGCATGG-TTTGA
*
46104992 TT-T-TATATAATATATATGCATGGTTTTA
1 TTATATATATAATATATATGCATGGTTTGA
*
46105020 TTATATATATAATATATATGGGTATGGTTTGA
1 TTATATATATAATATATAT--GCATGGTTTGA
46105052 -TATAATATATAA
1 TTAT-ATATATAA
46105064 ATTCATGAGG
Statistics
Matches: 85, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
27 3 0.04
28 21 0.25
29 13 0.15
30 27 0.32
31 4 0.05
32 17 0.20
ACGTcount: A:0.36, C:0.05, G:0.14, T:0.46
Consensus pattern (30 bp):
TTATATATATAATATATATGCATGGTTTGA
Found at i:46107874 original size:40 final size:40
Alignment explanation
Indices: 46107812--46108029 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
46107802 AAGCCAAGTA
* * * * *
46107812 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
46107851 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
46107891 CCTTCGGGACTTAACCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
46107931 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
46107971 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
46108011 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
46108030 TTATCATCCG
Statistics
Matches: 161, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 13 0.08
40 148 0.92
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:46115425 original size:47 final size:47
Alignment explanation
Indices: 46115374--46116168 Score: 1367
Period size: 47 Copynumber: 16.7 Consensus size: 47
46115364 TTAGGATTCT
* * *
46115374 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
46115421 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
46115468 ATGTGATGAATGTGAAAGTGTATAGATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
46115515 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
46115562 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
46115611 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
46115660 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
46115707 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
46115754 ATGTGATGAATGTGAAAGTGTATAGATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
46115801 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
46115848 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
46115897 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
46115946 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
46115993 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
46116040 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * * *
46116087 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGTCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
46116134 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
46116169 TCCCGAAGGG
Statistics
Matches: 723, Mismatches: 20, Indels: 10
0.96 0.03 0.01
Matches are distributed among these distances:
46 1 0.00
47 530 0.73
49 192 0.27
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:46115474 original size:22 final size:22
Alignment explanation
Indices: 46115446--46115521 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
46115436 AAGTGTATAT
46115446 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** ***
46115468 ATGTGATGAATGTGAAAGTGTATAG
1 ATGTGAT-AAGGCCTAA-TG-GCCG
46115493 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
46115515 ATGTGAT
1 ATGTGAT
46115522 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:46115669 original size:239 final size:237
Alignment explanation
Indices: 46115395--46116168 Score: 1381
Period size: 239 Copynumber: 3.3 Consensus size: 237
46115385 GTGAACATGC
*
46115395 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
*
46115460 AATGGCCGATGTGATGAATGTGAAAGTGTATAGATGTGATAAGGCCTAATGGCCGATGTGATGAA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
46115525 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
131 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
46115590 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
194 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
46115634 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
46115699 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
46115764 TGTGAAAGTGTATAGATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
131 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
46115829 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
196 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
46115871 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
*
46115936 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
64 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
46116001 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
129 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
46116066 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
194 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * * * * * * *
46116108 ATATATGTGACAGGGTCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
46116169 TCCCGAAGGG
Statistics
Matches: 519, Mismatches: 14, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
235 14 0.03
237 135 0.26
239 370 0.71
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (237 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:46115760 original size:22 final size:22
Alignment explanation
Indices: 46115732--46115807 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
46115722 AAGTGTATAT
46115732 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** ***
46115754 ATGTGATGAATGTGAAAGTGTATAG
1 ATGTGAT-AAGGCCTAA-TG-GCCG
46115779 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
46115801 ATGTGAT
1 ATGTGAT
46115808 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:46115846 original size:286 final size:286
Alignment explanation
Indices: 46115374--46116168 Score: 1443
Period size: 286 Copynumber: 2.8 Consensus size: 286
46115364 TTAGGATTCT
* * *
46115374 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
46115438 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAGATGTGATAAG
65 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAGATGTGATAAG
46115503 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
130 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
46115568 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
195 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
46115633 TATATATGTGATAAGGCCTAATGGCCG
260 TATATATGTGATAAGGCCTAATGGCCG
46115660 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
46115725 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAGATGTGATAAGG
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAGATGTGATAAGG
46115790 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
131 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
46115855 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
196 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
46115920 ATATATGTGATAAGGCCTAATGGCCG
261 ATATATGTGATAAGGCCTAATGGCCG
*
46115946 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
46116011 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAGATGTGATAAGG
* * * * * * *
46116076 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGTCGAGTGGCCAACGTGAT
131 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
46116141 GGATGTGAAAGTGTATA-A-ATGTGATAAG
196 GAATGTGAAAGTGTATATATATGTGATAAG
46116169 TCCCGAAGGG
Statistics
Matches: 495, Mismatches: 13, Indels: 4
0.97 0.03 0.01
Matches are distributed among these distances:
284 10 0.02
285 2 0.00
286 483 0.98
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (286 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAGATGTGATAAGG
CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATATGTGATAAGGCCTAATGGCCG
Found at i:46116343 original size:37 final size:37
Alignment explanation
Indices: 46116287--46116365 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
46116277 CCGAGCTCTA
* * *
46116287 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
46116324 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
46116361 AAGAC
1 AAGAC
46116366 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:46129533 original size:47 final size:47
Alignment explanation
Indices: 46129464--46129565 Score: 177
Period size: 47 Copynumber: 2.2 Consensus size: 47
46129454 AGCTTAGCTT
* * *
46129464 ATCATTGGTGGCTATGGCATAAGGTTCGGTCTCAGCTGGTCATAACC
1 ATCATCGGTGGCTATGGCATAAGGTTCGGTATCAGCCGGTCATAACC
46129511 ATCATCGGTGGCTATGGCATAAGGTTCGGTATCAGCCGGTCATAACC
1 ATCATCGGTGGCTATGGCATAAGGTTCGGTATCAGCCGGTCATAACC
46129558 ATCATCGG
1 ATCATCGG
46129566 AACCAATGCC
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 52 1.00
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (47 bp):
ATCATCGGTGGCTATGGCATAAGGTTCGGTATCAGCCGGTCATAACC
Found at i:46132773 original size:19 final size:19
Alignment explanation
Indices: 46132749--46132786 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
46132739 AGTTCAAAAT
46132749 GAGTTAGGAGTTATCACAC
1 GAGTTAGGAGTTATCACAC
46132768 GAGTTAGGAGTTATCACAC
1 GAGTTAGGAGTTATCACAC
46132787 TATCATAGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (19 bp):
GAGTTAGGAGTTATCACAC
Found at i:46139104 original size:25 final size:25
Alignment explanation
Indices: 46139076--46139124 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
46139066 CATTTGGATT
*
46139076 CATACTTTCTATGAACAT-GATTATA
1 CATACTTT-AATGAACATCGATTATA
46139101 CATACTTTAATGAACATCGATTAT
1 CATACTTTAATGAACATCGATTAT
46139125 TACCTTCCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.39
Consensus pattern (25 bp):
CATACTTTAATGAACATCGATTATA
Found at i:46139279 original size:12 final size:12
Alignment explanation
Indices: 46139262--46139286 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
46139252 GTCGAAACCA
46139262 TTGCTTTTCCTT
1 TTGCTTTTCCTT
46139274 TTGCTTTTCCTT
1 TTGCTTTTCCTT
46139286 T
1 T
46139287 ACATTAATGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.24, G:0.08, T:0.68
Consensus pattern (12 bp):
TTGCTTTTCCTT
Found at i:46141114 original size:42 final size:41
Alignment explanation
Indices: 46141012--46141128 Score: 137
Period size: 43 Copynumber: 2.8 Consensus size: 41
46141002 GTCTGAGACA
* *
46141012 TCGTGTAAGACCGTGTCTGGGACATAGGCCTCGATTGAAATT
1 TCGTGTAAGACCCTGTCTGGGACATAGGCATCGATTG-AATT
* * *
46141054 TACGTATAAGACCTTGTCTGGGACATCGGCATCGTATCTG-ATT
1 T-CGTGTAAGACCCTGTCTGGGACATAGGCATCG-AT-TGAATT
*
46141097 TCGTGTAAGACCCTGTCTGGGACAGAGGCATC
1 TCGTGTAAGACCCTGTCTGGGACATAGGCATC
46141129 AATATTGAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
42 28 0.44
43 32 0.50
44 2 0.03
45 2 0.03
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (41 bp):
TCGTGTAAGACCCTGTCTGGGACATAGGCATCGATTGAATT
Found at i:46148711 original size:42 final size:42
Alignment explanation
Indices: 46148596--46148746 Score: 132
Period size: 43 Copynumber: 3.5 Consensus size: 42
46148586 GTCTGAGATA
*
46148596 TCGTGTAAGACCGTGTCTGGGACACAGGTC-TCG-ATTGAAATT
1 TCGTGTAAGACCCTGTCTGGGACACAGG-CATCGTATTG-AATT
* * *
46148638 TACGTATAAGACCATGTCTGAGACATC-GGCATCGTATCTG-ATT
1 T-CGTGTAAGACCCTGTCTGGGACA-CAGGCATCGTAT-TGAATT
* *
46148681 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCAATATTGAATT
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATC-GTATTGAATT
* *
46148724 ACATGTAAGACCAC-GTCTGGGAC
1 TCGTGTAAGACC-CTGTCTGGGAC
46148747 GTCGGCATTG
Statistics
Matches: 90, Mismatches: 10, Indels: 17
0.77 0.09 0.15
Matches are distributed among these distances:
42 30 0.33
43 54 0.60
44 4 0.04
45 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (42 bp):
TCGTGTAAGACCCTGTCTGGGACACAGGCATCGTATTGAATT
Found at i:46148733 original size:85 final size:85
Alignment explanation
Indices: 46148596--46148754 Score: 198
Period size: 85 Copynumber: 1.9 Consensus size: 85
46148586 GTCTGAGATA
* * *
46148596 TCGTGTAAGACCGTGTCTGGGACACAGGTCTCGATTGAAATTTACGTATAAGACCATGTCTGAGA
1 TCGTGTAAGACCCTGTCTGGGACACAGGTCTCGATTGAAATTTACATATAAGACCACGTCTGAGA
46148661 CATCGGCATCGTATCTGATT
66 CATCGGCATCGTATCTGATT
* * *
46148681 TCGTGTAAGACCCTGTCTGGGACAGAGG-CATCAATATTG-AA-TTACATGTAAGACCACGTCTG
1 TCGTGTAAGACCCTGTCTGGGACACAGGTC-TC--GATTGAAATTTACATATAAGACCACGTCTG
* *
46148743 GGACGTCGGCAT
63 AGACATCGGCAT
46148755 TGTACTTATT
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
84 1 0.02
85 56 0.89
86 2 0.03
87 4 0.06
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (85 bp):
TCGTGTAAGACCCTGTCTGGGACACAGGTCTCGATTGAAATTTACATATAAGACCACGTCTGAGA
CATCGGCATCGTATCTGATT
Found at i:46154666 original size:20 final size:21
Alignment explanation
Indices: 46154633--46154672 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
46154623 TTTAGTTGTG
*
46154633 TTTGTTTTTGTTTTTAATGTC
1 TTTGTTTTTATTTTTAATGTC
*
46154654 TTTG-TTTTATTTTTGATGT
1 TTTGTTTTTATTTTTAATGT
46154673 GTATGTAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (21 bp):
TTTGTTTTTATTTTTAATGTC
Found at i:46156914 original size:48 final size:48
Alignment explanation
Indices: 46156851--46157270 Score: 554
Period size: 48 Copynumber: 8.8 Consensus size: 48
46156841 AGCATCCGAG
* * *
46156851 ATATGTGCCTGTGTAAAACCATGTCTGGGACATGGCGTCGGCAATGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* *
46156899 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGACATCAGCGATGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
*
46156947 ATATGTGCCTGTTTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* * * * *
46156995 ATATGTGCCTATGTAAGACTATGTCTGGGACATAGCATCCGCAATGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* * *
46157043 ATATGTGCCTGTATAAGACCATGTTTGGGACATGGCATCGGTGATGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* * *
46157091 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATTGGTGATGAC
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* * * *
46157139 ATATGTGCCTATGTAAGACCATGTCTAGGACATGGCATCAGTGATGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* * * *
46157187 ATATGTGCCAGTGTAAGACCATGTTTGAGACATGGCATTGGCGATGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* ** * *
46157235 ATGTG-GATTCATGTAAGACCATGTCTGGGAAATGGC
1 ATATGTGCCT-GTGTAAGACCATGTCTGGGACATGGC
46157271 GTTAGTACTT
Statistics
Matches: 324, Mismatches: 47, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
47 1 0.00
48 323 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (48 bp):
ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
Found at i:46158338 original size:76 final size:76
Alignment explanation
Indices: 46158177--46158327 Score: 212
Period size: 76 Copynumber: 2.0 Consensus size: 76
46158167 TTGTGTTGTT
* * * *
46158177 GTGGGTGACAAGAGTGCTTGGAAATTAGCCTTAAAATTTGTTCACACGAGTAGACACACAGGCAT
1 GTGGGTGACAAGAGGGCTTGGAAATTAGCCTCAAAATTTGTCCACACGAGTAGACACACAAGCAT
46158242 ATGTCTGGACC
66 ATGTCTGGACC
* * * * *
46158253 GTGGGTGACAAGAGGGCTTGGAAATTAGCCTCAAAATTTGTCCATATGGGTAGACATACAAGCGT
1 GTGGGTGACAAGAGGGCTTGGAAATTAGCCTCAAAATTTGTCCACACGAGTAGACACACAAGCAT
*
46158318 GTGTCTGGAC
66 ATGTCTGGAC
46158328 TTTGTGTGAC
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
76 65 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.25
Consensus pattern (76 bp):
GTGGGTGACAAGAGGGCTTGGAAATTAGCCTCAAAATTTGTCCACACGAGTAGACACACAAGCAT
ATGTCTGGACC
Found at i:46164874 original size:48 final size:48
Alignment explanation
Indices: 46164755--46165227 Score: 529
Period size: 48 Copynumber: 9.8 Consensus size: 48
46164745 GGCTTCTGAG
*
46164755 ATATGTGCCTGTGTAAGACCATGTCTGGGACAAGGCATCGGCGATGATAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATG--AT
* * * * * *
46164805 ATATATGCTTGTGAAAGACCATGTTTGGGATATGGCATCGGCAATGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* * * * ** *
46164853 ATATGTTCCCGTGTAAGACCATATCTGAGACATGGCATCGATGACGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* * *
46164901 ATATGTGCCTGTGTAAAGACCATGTCTGGGACATGGAATTGACGATGAT
1 ATATGTGCCTGTGT-AAGACCATGTCTGGGACATGGCATCGGCGATGAT
* * * *
46164950 ATATGTGGCTGTGTAATACCATGTCTGGGACATGACATCGGTGATGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* *
46164998 ATATGTTCCTGTGTAAGACCATGTCTAGGACATGGCATCAGG-GATGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATC-GGCGATGAT
*
46165046 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* ** * *
46165094 ATTTGTGCCACTGTAAGACCATGTTTGGGACATGGCATCGGCAATGAT
1 ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* * * *
46165142 ATATGTGTCAT-TGTATGACCATGTCTGGGACATGGCATTGGCAATGAT
1 ATATGTG-CCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* ** **
46165190 ATGTG-GATTCACGTAAGACCATGTCTGGGACATGGCAT
1 ATATGTGCCT-GTGTAAGACCATGTCTGGGACATGGCAT
46165228 TGGTACTTGA
Statistics
Matches: 357, Mismatches: 60, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
46 1 0.00
47 2 0.01
48 271 0.76
49 44 0.12
50 39 0.11
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (48 bp):
ATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
Found at i:46169718 original size:26 final size:26
Alignment explanation
Indices: 46169689--46169738 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
46169679 GTTATTTGAA
46169689 GATGATATTTTTCTATTTTTTTCAGC
1 GATGATATTTTTCTATTTTTTTCAGC
46169715 GATGATATTTTTCTATTTTTTTCA
1 GATGATATTTTTCTATTTTTTTCA
46169739 TGCTACTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.20, C:0.10, G:0.10, T:0.60
Consensus pattern (26 bp):
GATGATATTTTTCTATTTTTTTCAGC
Found at i:46171570 original size:31 final size:31
Alignment explanation
Indices: 46171532--46171610 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
46171522 TTTAACGGTT
46171532 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
46171563 ACTGGGCCGAAGTCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
46171594 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
46171611 ACTGTAAACG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Done.