Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 147 of 333
Found at i:48181919 original size:28 final size:28
Alignment explanation
Indices: 48181838--48181921 Score: 98
Period size: 29 Copynumber: 3.0 Consensus size: 28
48181828 GTGAGCATGA
** *
48181838 ATATGAATATGGCTGGGCCTAACGGGCC
1 ATATGAATATGATTGGGCCTAATGGGCC
*
48181866 ATAT-AAAAGTGATTTGGGCCTAATGGGCC
1 ATATGAATA-TGA-TTGGGCCTAATGGGCC
*
48181895 ATATGAATATGATTGGGCTTAATGGGC
1 ATATGAATATGATTGGGCCTAATGGGC
48181922 TAGGTACAGG
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
27 3 0.06
28 20 0.43
29 21 0.45
30 3 0.06
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.27
Consensus pattern (28 bp):
ATATGAATATGATTGGGCCTAATGGGCC
Found at i:48185014 original size:46 final size:46
Alignment explanation
Indices: 48184947--48185121 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
48184937 TGTAACCCGC
*
48184947 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
48184993 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * ** *
48185043 -C-TCA-CGAACTCGGACTTAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
48185086 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
48185122 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 60 0.57
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:48185113 original size:93 final size:93
Alignment explanation
Indices: 48184954--48185125 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
48184944 CGCCCATAAG
** *
48184954 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
48185019 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
48185047 CGAACTCGGACTTAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
48185112 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
48185126 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:48192654 original size:93 final size:93
Alignment explanation
Indices: 48192525--48192696 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
48192515 CGCCCATAAG
* * *
48192525 CGAACTAGGACTCAACTCAATGAACTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTAGGACTCAACTCAACGAACTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
48192590 ACGAGTTCAGATGCCTAGTTACATCTCA
66 ACGAGTTCAGATGCCTAGTTACATCTCA
* **
48192618 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTAGGACTCAACTCAACGAACTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
48192683 ACGAGTTCGGATGC
66 ACGAGTTCAGATGC
48192697 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTAGGACTCAACTCAACGAACTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCAGATGCCTAGTTACATCTCA
Found at i:48192686 original size:46 final size:46
Alignment explanation
Indices: 48192518--48192693 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
48192508 TGTAACCCGC
* * ** * *
48192518 CCATAAGCGAACTAGGACTCAACTCAATGAACTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
48192564 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-G--GAC-A-TTCGCAT
*
48192614 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
48192657 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
48192694 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 2 0.02
46 59 0.55
47 27 0.25
48 2 0.02
49 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:48192712 original size:46 final size:44
Alignment explanation
Indices: 48192569--48192712 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 44
48192559 CGCATCCATA
*
48192569 AGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
48192616 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
48192662 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
48192708 AGTGA
1 AGTGA
48192713 CATGTCACTT
Statistics
Matches: 79, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.42
47 30 0.38
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:48200484 original size:46 final size:46
Alignment explanation
Indices: 48200417--48200514 Score: 151
Period size: 46 Copynumber: 2.1 Consensus size: 46
48200407 GAGTCTTAAG
* * *
48200417 GCCCAATTTTTGACCCATGGATGCAATGGGTTCACGCTACCTCAAA
1 GCCCAATTATTGACCCATGGATGCAATAGGTTCACACTACCTCAAA
* *
48200463 GCCCAATTATTGACCCATGGATGTAATAGGTTCACACTACCTCAAG
1 GCCCAATTATTGACCCATGGATGCAATAGGTTCACACTACCTCAAA
48200509 GCCCAA
1 GCCCAA
48200515 CAATAATTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (46 bp):
GCCCAATTATTGACCCATGGATGCAATAGGTTCACACTACCTCAAA
Found at i:48201384 original size:23 final size:21
Alignment explanation
Indices: 48201345--48201386 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
48201335 GTACTTAAGT
48201345 ACATTTTGTTGCATTTTTAGC
1 ACATTTTGTTGCATTTTTAGC
48201366 ACATTTTAGTTAGCATTTTTA
1 ACATTTT-GTT-GCATTTTTA
48201387 ATATTGCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 7 0.37
22 3 0.16
23 9 0.47
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.52
Consensus pattern (21 bp):
ACATTTTGTTGCATTTTTAGC
Found at i:48204999 original size:40 final size:40
Alignment explanation
Indices: 48204925--48205146 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
48204915 AACCCAAGTA
* *
48204925 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
** * *
48204964 CCTTCGGGTGTTAGCCTGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
48205004 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
48205044 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
48205084 CCTTCGGGACTTAGCCCGAATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
48205124 CCTTCGGGACTTAGCCCGAATAT
1 CCTTCGGGACTTAGCCCGGATAT
48205147 CATTCGAATA
Statistics
Matches: 169, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 12 0.07
40 154 0.91
41 3 0.02
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:48222648 original size:79 final size:78
Alignment explanation
Indices: 48222546--48222768 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
48222536 GCTCCTCGTT
* *
48222546 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
48222611 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
48222626 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
48222689 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
48222704 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
48222767 GA
63 GA
48222769 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:48222663 original size:39 final size:40
Alignment explanation
Indices: 48222546--48222768 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
48222536 GCTCCTCGTT
* *
48222546 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
48222586 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
48222626 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
48222665 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
48222704 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
48222745 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
48222769 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:48230532 original size:40 final size:40
Alignment explanation
Indices: 48230488--48230749 Score: 328
Period size: 39 Copynumber: 6.7 Consensus size: 40
48230478 GCTCCTCGTT
* *
48230488 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
48230528 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
48230568 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
48230607 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
48230646 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
48230685 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
48230726 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
48230750 CAGCATTCAA
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 127 0.63
40 64 0.32
41 10 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:48232602 original size:49 final size:52
Alignment explanation
Indices: 48232493--48232622 Score: 176
Period size: 49 Copynumber: 2.6 Consensus size: 52
48232483 ATGAACAAAT
* * *
48232493 GAGTTACTTAATGCATGACTTAATTTAATAATGCAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGACATAATTTAATAATGCAAACTTTAACTAACATGA
* *
48232545 GAGTTACATAATGCATGTCATAA-TT-ATGATGCAAAC-TTAACTAACATGA
1 GAGTTACATAATGCATGACATAATTTAATAATGCAAACTTTAACTAACATGA
* *
48232594 GAGTTACATAATGCATGACCTTATTTAAT
1 GAGTTACATAATGCATGACATAATTTAAT
48232623 CCAGAACACA
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
49 32 0.47
50 12 0.18
51 4 0.06
52 20 0.29
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (52 bp):
GAGTTACATAATGCATGACATAATTTAATAATGCAAACTTTAACTAACATGA
Found at i:48246995 original size:46 final size:44
Alignment explanation
Indices: 48246942--48247117 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 44
48246932 TATTTGGGCA
48246942 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
* *** * *
48246988 TCCGAACTCGTTGAGTTGAATCCGAGTTCGAGAGATGTAACTAGGCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAAG
* * *
48247035 TCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
* * *
48247081 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48247118 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 66 0.63
47 30 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (44 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAG
Found at i:48247097 original size:93 final size:93
Alignment explanation
Indices: 48246938--48247109 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
48246928 AGGATATTTG
** * *
48246938 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAACGCCCGAACTCGTTGAG
48247003 TTGAATCCGAGTTCGAGAGATGTAACTA
66 TTGAATCCGAGTTCGAGAGATGTAACTA
* * *
48247031 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAACGCCCGAACTCGTTGAG
* *
48247096 TTGAGTCTGAGTTC
66 TTGAATCCGAGTTC
48247110 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAAACGCCCGAACTCGTTGAG
TTGAATCCGAGTTCGAGAGATGTAACTA
Found at i:48250081 original size:15 final size:15
Alignment explanation
Indices: 48250061--48250129 Score: 75
Period size: 15 Copynumber: 4.6 Consensus size: 15
48250051 ATATCTTGGG
48250061 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
48250076 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* * *
48250091 TTTTTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
48250106 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
48250121 TTTCTTTAT
1 TTTCTTTAT
48250130 TCGGTTTTCT
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 43 1.00
ACGTcount: A:0.12, C:0.16, G:0.13, T:0.59
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:48250121 original size:30 final size:30
Alignment explanation
Indices: 48250052--48250139 Score: 90
Period size: 30 Copynumber: 3.0 Consensus size: 30
48250042 CATAATATCA
* * * *
48250052 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
* *
48250082 TAT-TCTGGATTTTTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
48250112 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
48250140 TGTTATCTTT
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
29 8 0.17
30 39 0.81
31 1 0.02
ACGTcount: A:0.10, C:0.16, G:0.16, T:0.58
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:48252579 original size:46 final size:45
Alignment explanation
Indices: 48252526--48252701 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
48252516 TATTTGGGCA
48252526 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
48252572 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
48252619 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
48252665 CCCGAGCTCGTTGAGTGGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48252702 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.61
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:48252686 original size:93 final size:93
Alignment explanation
Indices: 48252522--48252693 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
48252512 AGGATATTTG
* *
48252522 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
48252587 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TGGAGTCCGAGTTCGAGAGATGTAACTA
* *
48252615 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
48252680 TGGAGTCTGAGTTC
66 TGGAGTCCGAGTTC
48252694 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TGGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:48255034 original size:30 final size:30
Alignment explanation
Indices: 48255019--48255290 Score: 356
Period size: 30 Copynumber: 9.4 Consensus size: 30
48255009 AACCAAAATG
*
48255019 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
48255049 AGAATCAGAATCA-ATATTAGTAACAGAATT
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
48255079 AGAATCAGAATCAGAATTAGGT----G-A-C
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
*
48255104 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
48255134 AGAATCAGAATCAGTATTAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
48255164 AGAATCAGAATCAGAATTACGT----G-A-C
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
48255189 AGAATCAGAATCAGAATTAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
48255219 AGAATCAGAATCAGTATTAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
48255249 AGAATCAGAATCAGAATTACGTGAA-AGAATC
1 AGAATCAGAATCAGAATTA-GT-AACAGAATC
48255280 AGAATCAGAAT
1 AGAATCAGAAT
48255291 GTGAATGCAA
Statistics
Matches: 215, Mismatches: 9, Indels: 35
0.83 0.03 0.14
Matches are distributed among these distances:
24 4 0.02
25 38 0.18
26 2 0.01
27 2 0.01
28 2 0.01
29 3 0.01
30 138 0.64
31 24 0.11
32 2 0.01
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.21
Consensus pattern (30 bp):
AGAATCAGAATCAGAATTAGTAACAGAATC
Found at i:48255119 original size:85 final size:85
Alignment explanation
Indices: 48255019--48255290 Score: 499
Period size: 85 Copynumber: 3.2 Consensus size: 85
48255009 AACCAAAATG
* *
48255019 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATTAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
*
48255084 CAGAATCAGAATTAGGTGAC
66 CAGAATCAGAATTACGTGAC
48255104 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
48255169 CAGAATCAGAATTACGTGAC
66 CAGAATCAGAATTACGTGAC
*
48255189 AGAATCAGAATCAGAATTAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
*
48255254 CAGAATCAGAATTACGTGAA
66 CAGAATCAGAATTACGTGAC
48255274 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
48255291 GTGAATGCAA
Statistics
Matches: 182, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 182 1.00
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.21
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
CAGAATCAGAATTACGTGAC
Found at i:48255285 original size:6 final size:6
Alignment explanation
Indices: 48255019--48255265 Score: 233
Period size: 6 Copynumber: 40.8 Consensus size: 6
48255009 AACCAAAATG
*
48255019 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
48255067 AGTAA-C AGAATT AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
48255116 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* * *
48255164 AGAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC AGAATT AGTAA-C
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AG-AATC
* *
48255213 AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC
48255261 AGAAT
1 AGAAT
48255266 TACGTGAAAG
Statistics
Matches: 199, Mismatches: 22, Indels: 40
0.76 0.08 0.15
Matches are distributed among these distances:
5 15 0.08
6 168 0.84
7 13 0.07
8 3 0.02
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:48255445 original size:27 final size:26
Alignment explanation
Indices: 48255408--48255494 Score: 102
Period size: 27 Copynumber: 3.3 Consensus size: 26
48255398 AGCATGGCTG
*
48255408 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
48255434 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
* * *
48255461 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TCGTGACAGAGCCA
48255488 CCAGAAC
1 CCAGAAC
48255495 GCTTCCTCCG
Statistics
Matches: 55, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
26 12 0.22
27 43 0.78
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:48255723 original size:27 final size:27
Alignment explanation
Indices: 48255693--48255884 Score: 194
Period size: 27 Copynumber: 7.3 Consensus size: 27
48255683 GAGGCAAAAT
* * *
48255693 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
48255720 GGTAATTC-ACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
48255746 AGTATTTCTACCCTACAAGAG--TTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
48255771 GATAATTCTACCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
48255798 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
48255825 GGTAATTCTACCCTA-TAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
48255851 GAAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
48255878 AGTAATT
1 GGTAATT
48255885 TCACAATCAA
Statistics
Matches: 131, Mismatches: 30, Indels: 8
0.78 0.18 0.05
Matches are distributed among these distances:
25 19 0.15
26 44 0.34
27 68 0.52
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:48255764 original size:53 final size:53
Alignment explanation
Indices: 48255694--48255884 Score: 201
Period size: 53 Copynumber: 3.6 Consensus size: 53
48255684 AGGCAAAATG
* * *
48255694 GTAATTTTACCCCACAAGGGTATCTCGGTAATTC-ACCCTACAGGGGTATTTC
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * * *
48255746 AGTATTTCTACCCTACAAGAG--TTTCGATAATTCTACCTTACAGGGGTATTTTG
1 -GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTA-TTTC
* * *
48255799 GTAATTCTATCCTATAAGGGTATTTCGGTAATTCTACCCTATA-GGGTATTTC
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * *
48255851 GAAAATTCTACCCTACAGGGGTATTTCAGTAATT
1 G-TAATTCTACCCTACAAGGGTATTTCGGTAATT
48255885 TCACAATCAA
Statistics
Matches: 112, Mismatches: 21, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
51 10 0.09
52 33 0.29
53 51 0.46
54 18 0.16
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.36
Consensus pattern (53 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:48255919 original size:27 final size:27
Alignment explanation
Indices: 48255889--48256162 Score: 311
Period size: 27 Copynumber: 10.2 Consensus size: 27
48255879 GTAATTTCAC
* *
48255889 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
48255916 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
48255943 AA-CTGAGGGTAAACCAGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * **
48255970 AATCAAGGGTAAAACGATAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
48255997 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
48256024 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
48256051 AA-CTGAGGGTAAAACGGT-ATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
48256077 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
48256104 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
48256131 AATTAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
48256158 AATCG
1 AATCG
48256163 GGAGTACTTT
Statistics
Matches: 206, Mismatches: 36, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
26 26 0.13
27 179 0.87
28 1 0.00
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:48255991 original size:81 final size:81
Alignment explanation
Indices: 48255889--48256162 Score: 358
Period size: 81 Copynumber: 3.4 Consensus size: 81
48255879 GTAATTTCAC
48255889 AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGT
1 AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATC-GAGGGT
* *
48255953 AAACCAGTAATTCTATA
65 AAAACAGTAATTCTGTA
* * * *
48255970 AATCAAGGGTAAAACGATAATTTTACAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTA
1 AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTA
*
48256035 AAATAGTAATTCTGTA
66 AAACAGTAATTCTGTA
* * * **
48256051 AA-CTGAGGGTAAAACGGT-ATTCTGTAAATCGAGGGTAAAACGGTAATTTTAAAAATCGAGGGT
1 AATC-AAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGT
*
48256114 AAAAC-GATAATTTTGTA
65 AAAACAG-TAATTCTGTA
* *
48256131 AATTAAGGGTAAAACGGTAATTCTGTAAATCG
1 AATCAAGGGTAAAACGGTAATTCTATAAATCG
48256163 GGAGTACTTT
Statistics
Matches: 168, Mismatches: 20, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
79 1 0.01
80 67 0.40
81 99 0.59
82 1 0.01
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (81 bp):
AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTA
AAACAGTAATTCTGTA
Found at i:48258277 original size:85 final size:85
Alignment explanation
Indices: 48258178--48258364 Score: 320
Period size: 85 Copynumber: 2.2 Consensus size: 85
48258168 AACCAAAATG
* * *
48258178 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATTAGAATCAATATTAGTAACAGAATTAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAACCAATATTAGTAACAGAATCAGAAT
*
48258243 CAGAATCAAAATTACGTGAC
66 CAGAATCAAAATTACGTGAA
*
48258263 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAACCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAACCAATATTAGTAACAGAATCAGAAT
*
48258328 CAGAATCAGAATTACGTGAA
66 CAGAATCAAAATTACGTGAA
48258348 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
48258365 GTGAATGCAA
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 96 1.00
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAACCAATATTAGTAACAGAATCAGAAT
CAGAATCAAAATTACGTGAA
Found at i:48258359 original size:6 final size:6
Alignment explanation
Indices: 48258178--48258339 Score: 138
Period size: 6 Copynumber: 26.8 Consensus size: 6
48258168 AACCAAAATG
* *
48258178 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATT AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * * *
48258226 AGTAA-C AGAATT AGAATC AGAATC AAAATT ACGTGA-C AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
* * *
48258275 AGAATC AGTAA-C AGAATC AGAATC AGAACC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
48258323 AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
48258340 TACGTGAAAG
Statistics
Matches: 125, Mismatches: 18, Indels: 26
0.74 0.11 0.15
Matches are distributed among these distances:
5 10 0.08
6 106 0.85
7 7 0.06
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:48258568 original size:27 final size:26
Alignment explanation
Indices: 48258482--48258561 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 26
48258472 AGCATGGCTG
* * *
48258482 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
48258508 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
48258535 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
48258562 TTAGAACGCT
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
26 12 0.25
27 36 0.75
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:48258797 original size:27 final size:27
Alignment explanation
Indices: 48258767--48258962 Score: 230
Period size: 27 Copynumber: 7.3 Consensus size: 27
48258757 GGGGCAAAAT
* * * *
48258767 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
48258794 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
48258821 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
48258848 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
48258875 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
48258902 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
48258929 GGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
48258956 AGTAATT
1 GGTAATT
48258963 TCACAATCAA
Statistics
Matches: 143, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 143 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:48258833 original size:54 final size:54
Alignment explanation
Indices: 48258767--48258962 Score: 266
Period size: 54 Copynumber: 3.6 Consensus size: 54
48258757 GGGGCAAAAT
* * * *
48258767 GGTAATTTTACCCCACAAAGGTATCTCGGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC
* * * *
48258821 GGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC
* * *
48258875 GGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC
* * *
48258929 GGAAATTCTACCCTACAGGGGTATTTCAGTAATT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATT
48258963 TCACAATCAA
Statistics
Matches: 123, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 123 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC
Found at i:48258961 original size:81 final size:81
Alignment explanation
Indices: 48258786--48258962 Score: 257
Period size: 81 Copynumber: 2.2 Consensus size: 81
48258776 ACCCCACAAA
* * * *
48258786 GGTATCTCGGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGAT
1 GGTATTTCGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGAT
48258851 AATTCTACCCTACAGG
66 AATTCTACCCTACAGG
* * * *
48258867 GGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGGA
1 GGTATTTCGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTC-GA
48258932 -AATTCTACCCTACAGG
65 TAATTCTACCCTACAGG
*
48258948 GGTATTTCAGTAATT
1 GGTATTTCGGTAATT
48258963 TCACAATCAA
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 83 0.98
82 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.37
Consensus pattern (81 bp):
GGTATTTCGGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGAT
AATTCTACCCTACAGG
Found at i:48258997 original size:27 final size:27
Alignment explanation
Indices: 48258967--48259216 Score: 274
Period size: 27 Copynumber: 9.3 Consensus size: 27
48258957 GTAATTTCAC
* * *
48258967 AATCAAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
48258994 AATCGAGGAG-AAAACGATAATTTTGTA
1 AATCGAGG-GTAAAACGGTAATTCTGTA
* * *
48259021 AA-CTAAGGGT-AAACTAGTAATTTTGTA
1 AATC-GAGGGTAAAAC-GGTAATTCTGTA
* * **
48259048 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
48259075 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
48259102 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * **
48259129 AA-CTGAGGGTAAAACGGAAATTTTAAA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
48259156 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
48259183 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
48259210 AATCGAG
1 AATCGAG
48259217 AGTACTTTGG
Statistics
Matches: 188, Mismatches: 27, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
26 7 0.04
27 174 0.93
28 7 0.04
ACGTcount: A:0.42, C:0.09, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:48259081 original size:81 final size:81
Alignment explanation
Indices: 48258967--48259213 Score: 320
Period size: 81 Copynumber: 3.0 Consensus size: 81
48258957 GTAATTTCAC
* * * * *
48258967 AATCAAGGGTAAAATGGTAATTCTATAAATCGAGGAG-AAAACGATAATTTTGTAAA-CTAAGGG
1 AATCAAGGGTAAAACGGTAATTTTAAAAATCGAGG-GTAAAACGGTAATTCTGTAAATC-AAGGG
* *
48259030 TAAACTAGTAATTTTGTA
64 TAAAATAGTAATTCTGTA
* *
48259048 AATCAAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
1 AATCAAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTA
48259113 AAATAGTAATTCTGTA
66 AAATAGTAATTCTGTA
* * *
48259129 AA-CTGAGGGTAAAACGGAAATTTTAAAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGT
1 AATC-AAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGT
**
48259193 AAAACGGTAATTCTGTA
65 AAAATAGTAATTCTGTA
48259210 AATC
1 AATC
48259214 GAGAGTACTT
Statistics
Matches: 149, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
80 2 0.01
81 145 0.97
82 2 0.01
ACGTcount: A:0.42, C:0.09, G:0.22, T:0.27
Consensus pattern (81 bp):
AATCAAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTA
AAATAGTAATTCTGTA
Found at i:48261705 original size:27 final size:26
Alignment explanation
Indices: 48261649--48261705 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
48261639 CAACCTTAAC
* *
48261649 CCTAGAGGTATATCAGTAATTTTACT
1 CCTAGAGGTAAATCAGTAATTTTACA
* * *
48261675 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGAGGTAAATCAGT-AATTTTACA
48261702 CCTA
1 CCTA
48261706 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (26 bp):
CCTAGAGGTAAATCAGTAATTTTACA
Found at i:48270715 original size:46 final size:46
Alignment explanation
Indices: 48270665--48270799 Score: 153
Period size: 52 Copynumber: 2.8 Consensus size: 46
48270655 TGTTTGGGCA
* ** *
48270665 TCCGAACTCGTTGAGCTGAGTTTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
48270711 TCCGAACTCGTTGAGTTGAGTCCGAGTTCTAGAGATGTAATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC---A-CT-T-ATGGATGCGAACG
* *
48270763 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48270800 GCGGGTTGCA
Statistics
Matches: 75, Mismatches: 8, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
46 30 0.40
47 1 0.01
48 1 0.01
49 2 0.03
50 1 0.01
51 1 0.01
52 39 0.52
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:48272638 original size:27 final size:26
Alignment explanation
Indices: 48272582--48272638 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
48272572 CAACCTTAAC
* *
48272582 CCTAGAGGTATATCAGTAATTTTACT
1 CCTAGAGGTAAATCAGTAATTTTACA
* * *
48272608 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGAGGTAAATCAGT-AATTTTACA
48272635 CCTA
1 CCTA
48272639 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (26 bp):
CCTAGAGGTAAATCAGTAATTTTACA
Found at i:48272951 original size:20 final size:21
Alignment explanation
Indices: 48272926--48272964 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
48272916 TGGGCCCGTA
*
48272926 AGCCTATTG-GGCCCAATTTT
1 AGCCTATCGAGGCCCAATTTT
48272946 AGCCTATCGAGGCCCAATT
1 AGCCTATCGAGGCCCAATT
48272965 ACCAAAGTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (21 bp):
AGCCTATCGAGGCCCAATTTT
Found at i:48275338 original size:40 final size:40
Alignment explanation
Indices: 48275255--48275438 Score: 192
Period size: 40 Copynumber: 4.6 Consensus size: 40
48275245 TTGAATGCTG
* * * * * *
48275255 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
48275295 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
48275335 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
48275375 TCCGGGTTAAGTCCCGAAGGCATTCGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
48275415 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
48275439 TGAACGAGGA
Statistics
Matches: 124, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 1 0.01
40 115 0.93
41 8 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:48275392 original size:80 final size:81
Alignment explanation
Indices: 48275255--48275438 Score: 212
Period size: 80 Copynumber: 2.3 Consensus size: 81
48275245 TTGAATGCTG
* * *
48275255 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
*
48275319 TGTGCGAGATACTAAA
66 CGTGCGAGATACTAAA
* * * * **
48275335 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* *
48275398 TCGTGTGAGTTACTAAA
65 TCGTGCGAGATACTAAA
* *
48275415 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
48275439 TGAACGAGGA
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
79 1 0.01
80 80 0.92
81 6 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACTAAA
Found at i:48283201 original size:40 final size:40
Alignment explanation
Indices: 48283118--48283301 Score: 192
Period size: 40 Copynumber: 4.6 Consensus size: 40
48283108 TTGAATGCTG
* * * * * *
48283118 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
48283158 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
48283198 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
48283238 TCCGGGTTAAGTCCCGAAGGCATTCGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
48283278 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
48283302 TGAACGAGGA
Statistics
Matches: 124, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 1 0.01
40 115 0.93
41 8 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:48283255 original size:80 final size:81
Alignment explanation
Indices: 48283118--48283301 Score: 212
Period size: 80 Copynumber: 2.3 Consensus size: 81
48283108 TTGAATGCTG
* * *
48283118 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
*
48283182 TGTGCGAGATACTAAA
66 CGTGCGAGATACTAAA
* * * * **
48283198 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* *
48283261 TCGTGTGAGTTACTAAA
65 TCGTGCGAGATACTAAA
* *
48283278 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
48283302 TGAACGAGGA
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
79 1 0.01
80 80 0.92
81 6 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACTAAA
Found at i:48288528 original size:43 final size:43
Alignment explanation
Indices: 48288434--48288554 Score: 138
Period size: 43 Copynumber: 2.8 Consensus size: 43
48288424 TCGAGATGGC
* * * * *
48288434 ATTACATGTAAGACCATGTTTGGGACATTGGAATTGTATTGAG
1 ATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAATGAG
*
48288477 ATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAAT-CG
1 ATTACGTGTAAGACCATGTCTGGGACATTGGCATCG-TAATGAG
* *
48288520 ATTTCGTGTAAGA-CACTGTCTGGGACAGTGGCATC
1 ATTACGTGTAAGACCA-TGTCTGGGACATTGGCATC
48288555 AATAAGTGAA
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
42 2 0.03
43 63 0.93
44 3 0.04
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (43 bp):
ATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAATGAG
Found at i:48290097 original size:48 final size:48
Alignment explanation
Indices: 48290036--48291180 Score: 1865
Period size: 48 Copynumber: 23.9 Consensus size: 48
48290026 ATATACACAC
* *
48290036 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
48290084 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
48290132 ATCTCAT-TCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATAT-ATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
48290180 ATCTTATATATATTTCACACTAGCCACTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
48290228 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
48290276 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
48290324 ATCTCAT-TCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATAT-ATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
48290372 ATCTCAT-TCATATTTCACACTAGCCATTCGGCTTTACCACAAATACAT
1 ATCTCATAT-ATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
48290420 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATACACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
48290468 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
48290516 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
48290564 ATCTCAT-TCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATAT-ATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* **
48290612 ATCTTATATATATTTCACACTAGCCATTCGAATTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
48290660 ATCTCATATATATTTCACATTAGCCATTCGACTTTATCACATATACCT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
48290708 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
48290756 ATCTCAT-TCTTATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATAT-ATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
48290804 ATCTCAT-TCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATAT-ATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
48290852 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
48290900 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
48290948 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
48290996 ATCTCAT-TCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATAT-ATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
48291044 ATCTCGT-TCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATAT-ATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
48291092 ATCTCATACATATTTCACATTAGCCATTCGGCTTTATCACATATACAT
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
48291140 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACA
1 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACA
48291181 CACATATATA
Statistics
Matches: 1040, Mismatches: 47, Indels: 20
0.94 0.04 0.02
Matches are distributed among these distances:
47 2 0.00
48 1036 1.00
49 2 0.00
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:48294699 original size:40 final size:40
Alignment explanation
Indices: 48294641--48294788 Score: 163
Period size: 40 Copynumber: 3.6 Consensus size: 40
48294631 TTGACAACAA
** *
48294641 TTTGGCTATGTACAGCACTTAGTGTACGATTCAAGATAGC
1 TTTGGCTATGTATGGCACTTAGTGTGCGATTCAAGATAGC
* *
48294681 TTCGGCTATGTATGGCACTTAGTGTGCGATTCAAGATAGA
1 TTTGGCTATGTATGGCACTTAGTGTGCGATTCAAGATAGC
** * * *
48294721 TTTGGCTATGTATGAAACGTAGTGTGCGAGATT-AAAATTGC
1 TTTGGCTATGTATGGCACTTAGTGTGC--GATTCAAGATAGC
*
48294762 TTTGGCTATGTATTGGTACTTAGTGTG
1 TTTGGCTATGTA-TGGCACTTAGTGTG
48294789 TGAGAATTCG
Statistics
Matches: 90, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
40 58 0.64
41 17 0.19
42 15 0.17
ACGTcount: A:0.25, C:0.13, G:0.26, T:0.36
Consensus pattern (40 bp):
TTTGGCTATGTATGGCACTTAGTGTGCGATTCAAGATAGC
Found at i:48297804 original size:48 final size:46
Alignment explanation
Indices: 48297760--48297887 Score: 177
Period size: 48 Copynumber: 2.7 Consensus size: 46
48297750 CTCATATCGG
*
48297760 TGCCGATGCCATGTCCCAAACATGGTCTTACATGGGCACACATATCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACAT-GGCACACATATCA
* *
48297807 TCACCGATGCCATGTCCCAGACATAGTCTTACACTGGCACACATATCAA
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACA-TGGCACACATATC-A
*
48297856 TG-CGATGCCATGTCCCAGACATGGTTTTACAT
1 TGCCGATGCCATGTCCCAGACATGGTCTTACAT
48297888 TGGCTCTCAT
Statistics
Matches: 72, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
46 1 0.01
47 28 0.39
48 40 0.56
49 3 0.04
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (46 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACATGGCACACATATCA
Found at i:48297886 original size:47 final size:46
Alignment explanation
Indices: 48297763--48297919 Score: 172
Period size: 48 Copynumber: 3.3 Consensus size: 46
48297753 ATATCGGTGC
* *
48297763 CGATGCCATGTCCCAAACATGGTCTTACATGGGCACACATATC-ATCAC
1 CGATGCCATGTCCCAGACATGGTCTTACAT-GGCACACATATCAAT--G
*
48297811 CGATGCCATGTCCCAGACATAGTCTTACACTGGCACACATATCAATG
1 CGATGCCATGTCCCAGACATGGTCTTACA-TGGCACACATATCAATG
* * * *
48297858 CGATGCCATGTCCCAGACATGGTTTTACATTGGCTCTCATCTCAGATG
1 CGATGCCATGTCCCAGACATGGTCTTACA-TGGCACACATATCA-ATG
*
48297906 CTGACGCCATGTCC
1 C-GATGCCATGTCC
48297920 AAGATACACG
Statistics
Matches: 95, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
47 38 0.40
48 43 0.45
49 14 0.15
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.25
Consensus pattern (46 bp):
CGATGCCATGTCCCAGACATGGTCTTACATGGCACACATATCAATG
Found at i:48301729 original size:16 final size:16
Alignment explanation
Indices: 48301703--48301754 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 16
48301693 TATGAATCGA
* *
48301703 CAAAA-GCCGAAATGT
1 CAAAATGCCGAAAAGC
48301718 CAAAATGCCGAAAAGC
1 CAAAATGCCGAAAAGC
*
48301734 CGAAATGCCGAAAAGC
1 CAAAATGCCGAAAAGC
48301750 CAAAA
1 CAAAA
48301755 GTTTGGCTAC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
15 5 0.16
16 27 0.84
ACGTcount: A:0.50, C:0.23, G:0.19, T:0.08
Consensus pattern (16 bp):
CAAAATGCCGAAAAGC
Found at i:48301735 original size:8 final size:8
Alignment explanation
Indices: 48301704--48301755 Score: 54
Period size: 8 Copynumber: 6.6 Consensus size: 8
48301694 ATGAATCGAC
48301704 AAAAGCCG
1 AAAAGCCG
* *
48301712 AAATGTC-
1 AAAAGCCG
48301719 AAAATGCCG
1 AAAA-GCCG
48301728 AAAAGCCG
1 AAAAGCCG
*
48301736 AAATGCCG
1 AAAAGCCG
48301744 AAAAGCC-
1 AAAAGCCG
48301751 AAAAG
1 AAAAG
48301756 TTTGGCTACA
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
7 8 0.22
8 24 0.67
9 4 0.11
ACGTcount: A:0.50, C:0.21, G:0.21, T:0.08
Consensus pattern (8 bp):
AAAAGCCG
Found at i:48302044 original size:29 final size:28
Alignment explanation
Indices: 48301973--48302087 Score: 106
Period size: 28 Copynumber: 4.1 Consensus size: 28
48301963 GAATATGAAT
* ** * * *
48301973 GTGACTGGGCCTAACAGGCCAAATAAAT
1 GTGATTGGGCCTAATGGGCCATATACAG
48302001 GTGATTGGGCCTAATGGGCCATATACAG
1 GTGATTGGGCCTAATGGGCCATATACAG
*
48302029 GTGATTTGGGCCTAATGGGCCATATGA-AT
1 GTGA-TTGGGCCTAATGGGCCATAT-ACAG
* * * *
48302058 ATGATCGGGCTTAATGGGCCAGATACAG
1 GTGATTGGGCCTAATGGGCCATATACAG
48302086 GT
1 GT
48302088 ATGTGAATTT
Statistics
Matches: 71, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
27 1 0.01
28 45 0.63
29 24 0.34
30 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.24
Consensus pattern (28 bp):
GTGATTGGGCCTAATGGGCCATATACAG
Found at i:48302073 original size:57 final size:57
Alignment explanation
Indices: 48301978--48302087 Score: 148
Period size: 57 Copynumber: 1.9 Consensus size: 57
48301968 TGAATGTGAC
* * *
48301978 TGGGCCTAACAGGCCAAATAAATGTGATTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACAGGCCAAATAAATATGATCGGGCCTAATGGGCCAGATACAGGTGATT
** * * *
48302035 TGGGCCTAATGGGCCATATGAATATGATCGGGCTTAATGGGCCAGATACAGGT
1 TGGGCCTAACAGGCCAAATAAATATGATCGGGCCTAATGGGCCAGATACAGGT
48302088 ATGTGAATTT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
57 45 1.00
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (57 bp):
TGGGCCTAACAGGCCAAATAAATATGATCGGGCCTAATGGGCCAGATACAGGTGATT
Found at i:48313957 original size:27 final size:26
Alignment explanation
Indices: 48313917--48314001 Score: 98
Period size: 27 Copynumber: 3.2 Consensus size: 26
48313907 CAGCATGGCT
* * * *
48313917 ACCAAAACAAATATTGTGACTGAGTC
1 ACCAGAACAGATATTGTGACAGAGCC
*
48313943 ACCAGATACAGATATTGTGGCAGAGCC
1 ACCAGA-ACAGATATTGTGACAGAGCC
*
48313970 ACCAGAACAGATATTTGTGGCAGAGCC
1 ACCAGAACAGATA-TTGTGACAGAGCC
48313997 ACCAG
1 ACCAG
48314002 TAAACTCCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
26 12 0.23
27 40 0.77
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
ACCAGAACAGATATTGTGACAGAGCC
Found at i:48316817 original size:29 final size:28
Alignment explanation
Indices: 48316762--48316875 Score: 140
Period size: 28 Copynumber: 4.0 Consensus size: 28
48316752 GTGAGCATGA
* *
48316762 ATATAAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
48316790 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
48316819 ATATACAA-GTGATTTGGCCTAATAGGCC
1 ATATA-AATGTGATTGGGCCTAATGGGCC
* * *
48316847 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
48316875 A
1 A
48316876 GATACAAGTA
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 47 0.64
29 23 0.31
30 2 0.03
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:48319100 original size:27 final size:27
Alignment explanation
Indices: 48319065--48319237 Score: 220
Period size: 27 Copynumber: 6.4 Consensus size: 27
48319055 TAGATAAGTT
*
48319065 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
48319092 GTAGGATTATCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
48319119 GTAGAATTACCGAAATACCCCTGCAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
48319146 ATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
48319173 GTAGAAATATCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
48319200 GCAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
48319227 GTAAAATTACC
1 GTAGAATTACC
48319238 ATTTTGCCCC
Statistics
Matches: 127, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:48319206 original size:81 final size:81
Alignment explanation
Indices: 48319066--48319219 Score: 245
Period size: 81 Copynumber: 1.9 Consensus size: 81
48319056 AGATAAGTTG
* * *
48319066 TAGAATTACCGAAATACCCCTGTAAGGTAGGATTATCGAAATACCCCTGTAGGGTAGAATTACCG
1 TAGAATTACCGAAATACCCCTGTAAGGTAGAAATATCGAAATACCCCTGTAGGGCAGAATTACCG
48319131 AAATACCCCTGCAGGA
66 AAATACCCCTGCAGGA
* * *
48319147 TAGAATTACCGAAATACCCTTGTAGGGTAGAAATATCGAAATACCCTTGTAGGGCAGAATTACCG
1 TAGAATTACCGAAATACCCCTGTAAGGTAGAAATATCGAAATACCCCTGTAGGGCAGAATTACCG
*
48319212 AGATACCC
66 AAATACCC
48319220 TTGTGGGGTA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 66 1.00
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (81 bp):
TAGAATTACCGAAATACCCCTGTAAGGTAGAAATATCGAAATACCCCTGTAGGGCAGAATTACCG
AAATACCCCTGCAGGA
Found at i:48321635 original size:39 final size:40
Alignment explanation
Indices: 48321534--48321718 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
48321524 TCGAATGATG
* * *
48321534 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
48321573 ATCCGGACTAAGTTCCAAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
48321614 TCCGAGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
48321653 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
48321692 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
48321719 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 34 0.28
40 79 0.65
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:48321740 original size:79 final size:78
Alignment explanation
Indices: 48321571--48321741 Score: 193
Period size: 79 Copynumber: 2.2 Consensus size: 78
48321561 CTAAGTGACC
* * *
48321571 ATATCCGGACTAAGTTCCAAAGGCATTTGTGCGAGTTACTAATTCCGAGCTAAGCCCGAAGGCAT
1 ATATCCGG-TTAAGTCCCAAAGGCATTTGTGCGAGTTACTAATACCGAGCTAAGCCCGAAGGCAT
**
48321636 TGGTGCGAGTTACT
65 TGGAACGAGTTACT
* * * *
48321650 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGC
1 ATATCC-GGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAT-ACCGAGCTAAG-CCCGAAGGC
*
48321714 ATTTGAACGAG-TAGCT
63 ATTGGAACGAGTTA-CT
48321730 ATATCCGGTTAA
1 ATATCCGGTTAA
48321742 ATTCTGAAGG
Statistics
Matches: 77, Mismatches: 11, Indels: 8
0.80 0.11 0.08
Matches are distributed among these distances:
78 2 0.03
79 49 0.64
80 26 0.34
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (78 bp):
ATATCCGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTAATACCGAGCTAAGCCCGAAGGCATT
GGAACGAGTTACT
Found at i:48329486 original size:40 final size:41
Alignment explanation
Indices: 48329288--48329472 Score: 222
Period size: 40 Copynumber: 4.6 Consensus size: 41
48329278 TCGAATGATG
* * *
48329288 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
48329328 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
48329368 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
48329407 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
48329448 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
48329473 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:48329494 original size:79 final size:79
Alignment explanation
Indices: 48329341--48329505 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
48329331 GGACTAAGAT
* **
48329341 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
48329406 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
48329420 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* * *
48329483 TATAT-CTGGTTAAATT
63 TAAATCCGGGTTAAATC
48329499 CCGAAGG
1 CCGAAGG
48329506 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 50 0.68
80 22 0.30
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:48339796 original size:27 final size:26
Alignment explanation
Indices: 48339753--48339821 Score: 84
Period size: 26 Copynumber: 2.6 Consensus size: 26
48339743 NNNNNNNNNN
* *
48339753 ATTGTGACAGAGTCACCAGATACAGAT
1 ATTGTGGCAGAGCCACCAGA-ACAGAT
*
48339780 GTTGTGGCAGAGCCACCAGAACAGAT
1 ATTGTGGCAGAGCCACCAGAACAGAT
* *
48339806 AATGTGGCAAAGCCAC
1 ATTGTGGCAGAGCCAC
48339822 TTAACAGAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
26 19 0.53
27 17 0.47
ACGTcount: A:0.35, C:0.22, G:0.26, T:0.17
Consensus pattern (26 bp):
ATTGTGGCAGAGCCACCAGAACAGAT
Found at i:48340016 original size:22 final size:22
Alignment explanation
Indices: 48339980--48340044 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
48339970 GCAAATACAT
* *
48339980 TTGGCACACATCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
48340002 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
**
48340024 TTAACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
48340045 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:48340528 original size:27 final size:27
Alignment explanation
Indices: 48340471--48340719 Score: 356
Period size: 27 Copynumber: 9.3 Consensus size: 27
48340461 GGGGCAAAAT
* * * *
48340471 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
48340497 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
48340524 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
48340551 GGTAATTCTACCCTATAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
48340578 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
48340605 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
48340632 GGTAATTCTACCCTACAGGGGTGTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
48340659 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
**
48340686 GGTAATTCTACCCTACAGGGAAATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
48340713 GGTAATT
1 GGTAATT
48340720 TTGTAAATCG
Statistics
Matches: 198, Mismatches: 24, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
26 15 0.08
27 183 0.92
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:48340743 original size:81 final size:81
Alignment explanation
Indices: 48340496--48340749 Score: 264
Period size: 81 Copynumber: 3.1 Consensus size: 81
48340486 CAAGGTATCT
* *
48340496 CGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTA
1 CGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTAATT-TT
*** * *
48340561 CCCTATAG-GGGTATTG
65 CTAAATCGAGGGTATTA
* * * *
48340577 CGATAATTCTACCTTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTCCGGTAA--TTC
1 CGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTC
** * *
48340640 TACCCTAC-AGGGGTGTTT
66 TA-AAT-CGA-GGGTATTA
** *
48340658 CGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGAAATTTCGGTAATTTTG
1 CGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTC
**
48340723 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTATTA
48340739 CGGTAATTCTA
1 CGGTAATTCTA
48340750 TAAATTAGGG
Statistics
Matches: 140, Mismatches: 26, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
78 2 0.01
79 1 0.01
81 131 0.94
82 2 0.01
83 4 0.03
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.33
Consensus pattern (81 bp):
CGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTAATTTTC
TAAATCGAGGGTATTA
Found at i:48340788 original size:27 final size:27
Alignment explanation
Indices: 48340756--48340987 Score: 252
Period size: 27 Copynumber: 8.6 Consensus size: 27
48340746 TCTATAAATT
* **
48340756 AGGGGTACTTTGGTAATTTTACAAGTC
1 AGGGGTATTTTGGTAATTTTACAAACC
*** ** *
48340783 -GAGGGTATTTCAATAATTTTACAGGTCG
1 AG-GGGTATTTTGGTAATTTTACA-AACC
** * *
48340811 AG-GGTATTTCAGTAATTTCACAAATC
1 AGGGGTATTTTGGTAATTTTACAAACC
*
48340837 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACC
*
48340864 AGGGGTATTTTGATAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
48340891 AGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
*
48340918 AGGGGTATTTTGGTAATTTTATAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
* * * *
48340945 AAGGGTATTCTAGTAATTTTAAAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
48340972 AGGGGTATTTTGGTAA
1 AGGGGTATTTTGGTAA
48340988 ACTAAAGTAT
Statistics
Matches: 171, Mismatches: 30, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
26 3 0.02
27 167 0.98
29 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.37
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACC
Found at i:48340793 original size:81 final size:81
Alignment explanation
Indices: 48340715--48340938 Score: 184
Period size: 81 Copynumber: 2.8 Consensus size: 81
48340705 GAAATTTCGG
** * * *
48340715 TAATTTTGTAAATCGAGGGTAAAACGGTAA-TTCTATAAATTAGGGGTACTTTGGTAATTTTACA
1 TAATTTTACAAATCGAGGGTAAAACAGTAATTTC-ACAAATCAGGGGTACTTTGGTAATTTTACA
48340779 AGTCGAGGGTATTTCAA
65 AGTCGAGGGTATTTCAA
** *** *
48340796 TAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAA
1 TAATTTTACAAATCGAGGGTAAAACAGTAATTTCACAAATCAGGGGTACTTTGGTAATTTTACAA
* * **
48340861 -ACTAGGGGTATTTTGA
66 GTCGA-GGGTATTTCAA
* ***** * * *
48340877 TAATTTTACAAA-CCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTA
1 TAATTTTACAAATCGA-GGGTAAAACAGTAATTTCACAAATCAGGGGTACTTTGGTAATTTTA
48340939 TAAACCAAGG
Statistics
Matches: 118, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
80 4 0.03
81 111 0.94
82 3 0.03
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.38
Consensus pattern (81 bp):
TAATTTTACAAATCGAGGGTAAAACAGTAATTTCACAAATCAGGGGTACTTTGGTAATTTTACAA
GTCGAGGGTATTTCAA
Found at i:48344483 original size:38 final size:38
Alignment explanation
Indices: 48344398--48344596 Score: 229
Period size: 38 Copynumber: 5.2 Consensus size: 38
48344388 GAATCCAGTC
* * *
48344398 ACCAGCACAAAACCTGCGGGACTTTAAGCTTGAATATAAT
1 ACCAGCACAAAGCCTGCGGGA-TTTAA-CTCGGATATAAT
* * *
48344438 ACTAGCACTAAGCCTGCGGGATTTAACTCGGATATAGT
1 ACCAGCACAAAGCCTGCGGGATTTAACTCGGATATAAT
* * * *
48344476 TCCAGCACGAAGCCTACAGGATTTAACTCGGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACTCGGATATAAT
* * *
48344514 ACCAACACGAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACTCGGATATAAT
*
48344552 ACCAACACAAAGCCTGCGGGATTTAAC-CTGGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACTC-GGATATAAT
*
48344590 TCCAGCA
1 ACCAGCA
48344597 TATAGCCTAC
Statistics
Matches: 138, Mismatches: 20, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
37 1 0.01
38 114 0.83
39 5 0.04
40 18 0.13
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.22
Consensus pattern (38 bp):
ACCAGCACAAAGCCTGCGGGATTTAACTCGGATATAAT
Found at i:48350559 original size:45 final size:45
Alignment explanation
Indices: 48350495--48350672 Score: 275
Period size: 45 Copynumber: 4.0 Consensus size: 45
48350485 TATTGTACGG
*
48350495 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* ** *
48350540 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGTTGGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
48350585 TACTATTTGGGCCTTTGAGCCTAACAGGCTATAATGCCAGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
48350630 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
48350673 AATGATGTCG
Statistics
Matches: 119, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 119 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:48350742 original size:41 final size:42
Alignment explanation
Indices: 48350649--48350747 Score: 112
Period size: 41 Copynumber: 2.4 Consensus size: 42
48350639 GGCCTTCGAG
* *
48350649 CCTAGCAGGCTATAATGCCGGTGAAATGATGTCGGGCTTCAAG
1 CCTAGCAGGCTA-AATGCCGGTGAAATGATGTCGGGCTTAAAA
* * * *
48350692 CCTACCAGGCGAAATGCCGGTG-GATGAAT-TCGGGTTTAAAA
1 CCTAGCAGGCTAAATGCCGGTGAAATG-ATGTCGGGCTTAAAA
48350733 CCTAGCAGGCTAAAT
1 CCTAGCAGGCTAAAT
48350748 ATTGGTGATT
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
41 25 0.53
42 12 0.26
43 10 0.21
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.22
Consensus pattern (42 bp):
CCTAGCAGGCTAAATGCCGGTGAAATGATGTCGGGCTTAAAA
Found at i:48356917 original size:49 final size:49
Alignment explanation
Indices: 48356861--48356988 Score: 141
Period size: 49 Copynumber: 2.6 Consensus size: 49
48356851 TGTGTGTCAG
* * *
48356861 TGTAAGACCTGTCTGGGACGTGGCATCGACACT-GATAGATGAGAGCCAC
1 TGTAAGACCTGTCTAGGACATGGCATCGAC-CTCGATAGATGAAAGCCAC
* * * * *
48356910 TGTAAGACCTGTCTAGGACATGGTATCGGCCTCGATATATGAAAGTCAG
1 TGTAAGACCTGTCTAGGACATGGCATCGACCTCGATAGATGAAAGCCAC
* * *
48356959 TGTAAGACCTATCTAGAACACGGCATCGAC
1 TGTAAGACCTGTCTAGGACATGGCATCGAC
48356989 TTTAATGTGC
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
48 2 0.03
49 63 0.97
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.23
Consensus pattern (49 bp):
TGTAAGACCTGTCTAGGACATGGCATCGACCTCGATAGATGAAAGCCAC
Found at i:48360855 original size:47 final size:47
Alignment explanation
Indices: 48360789--48361223 Score: 645
Period size: 47 Copynumber: 9.1 Consensus size: 47
48360779 GAAATGATAG
48360789 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
48360836 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
48360885 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
48360932 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
48360981 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
48361028 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * *
48361077 CAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
48361124 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * * *
48361173 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
48361220 TAAG
1 TAAG
48361224 TCCCGAAGGG
Statistics
Matches: 352, Mismatches: 28, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
47 180 0.51
49 172 0.49
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:48360953 original size:96 final size:96
Alignment explanation
Indices: 48360792--48361223 Score: 729
Period size: 96 Copynumber: 4.5 Consensus size: 96
48360782 ATGATAGTAA
48360792 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
48360857 ATGAATGTGAAAGTGTATATATATGTGATAA
66 ATGAATGTGAAAGTGTATATATATGTGATAG
48360888 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
48360953 ATGAATGTGAAAGTGTATATATATGTGATAG
66 ATGAATGTGAAAGTGTATATATATGTGATAG
48360984 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
48361049 ATGAATGTGGAAGTGTATATATATGTGACAG
66 ATGAATGTGAAAGTGTATATATATGTGATAG
* * * *
48361080 GGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
48361145 ATGAATGTGGAAGTGTATATATATGTGACAG
66 ATGAATGTGAAAGTGTATATATATGTGATAG
* * * * * *
48361176 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
48361224 TCCCGAAGGG
Statistics
Matches: 327, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 327 1.00
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (96 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGTATATATATGTGATAG
Found at i:48363296 original size:43 final size:43
Alignment explanation
Indices: 48363248--48363436 Score: 360
Period size: 43 Copynumber: 4.4 Consensus size: 43
48363238 TTGGTTTTCA
48363248 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
48363291 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
48363334 ACACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
48363377 GCACTAAGTGTGCAGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
48363420 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
48363437 TTGAAATGCA
Statistics
Matches: 142, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 142 1.00
ACGTcount: A:0.24, C:0.15, G:0.34, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:48363453 original size:29 final size:29
Alignment explanation
Indices: 48363418--48363491 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
48363408 GTTGTGAGAT
* *
48363418 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* *
48363447 TGGCACTAAGTGTGCTAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
48363476 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
48363492 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:48363925 original size:40 final size:40
Alignment explanation
Indices: 48363802--48364022 Score: 234
Period size: 40 Copynumber: 5.5 Consensus size: 40
48363792 TCGAATGATG
* *
48363802 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * * * *
48363842 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAGTGA-TATA
*
48363882 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
48363922 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* ** * * *
48363962 TCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
48364002 TCCGGGCTAGGTCCCGAAGAG
1 TCCGGGCTAAGTCCCGAAGAG
48364023 TAATCATGAT
Statistics
Matches: 151, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
39 1 0.01
40 131 0.87
41 19 0.13
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:48366933 original size:47 final size:47
Alignment explanation
Indices: 48366867--48367301 Score: 636
Period size: 47 Copynumber: 9.1 Consensus size: 47
48366857 GAAATGATAG
*
48366867 TAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
48366914 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
48366963 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
48367010 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
48367059 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
48367106 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * *
48367155 CAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
48367202 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * * *
48367251 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
48367298 TAAG
1 TAAG
48367302 TCCCGAAGGG
Statistics
Matches: 351, Mismatches: 29, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
47 179 0.51
49 172 0.49
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:48367031 original size:96 final size:96
Alignment explanation
Indices: 48366870--48367301 Score: 720
Period size: 96 Copynumber: 4.5 Consensus size: 96
48366860 ATGATAGTAA
*
48366870 GGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
48366935 ATGAATGTGAAAGTGTATATATATGTGATAA
66 ATGAATGTGAAAGTGTATATATATGTGATAG
48366966 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
48367031 ATGAATGTGAAAGTGTATATATATGTGATAG
66 ATGAATGTGAAAGTGTATATATATGTGATAG
48367062 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
48367127 ATGAATGTGGAAGTGTATATATATGTGACAG
66 ATGAATGTGAAAGTGTATATATATGTGATAG
* * * *
48367158 GGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
48367223 ATGAATGTGGAAGTGTATATATATGTGACAG
66 ATGAATGTGAAAGTGTATATATATGTGATAG
* * * * * *
48367254 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
48367302 TCCCGAAGGG
Statistics
Matches: 326, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 326 1.00
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (96 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGTATATATATGTGATAG
Found at i:48369368 original size:43 final size:43
Alignment explanation
Indices: 48369320--48369508 Score: 360
Period size: 43 Copynumber: 4.4 Consensus size: 43
48369310 TTGGTTTTCA
48369320 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
48369363 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
48369406 ACACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
48369449 GCACTAAGTGTGCAGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
48369492 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
48369509 TTGAAATGCA
Statistics
Matches: 142, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 142 1.00
ACGTcount: A:0.24, C:0.15, G:0.34, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:48369525 original size:29 final size:29
Alignment explanation
Indices: 48369490--48369563 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
48369480 GTTGTGAGAT
* *
48369490 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* *
48369519 TGGCACTAAGTGTGCTAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
48369548 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
48369564 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:48369997 original size:40 final size:40
Alignment explanation
Indices: 48369874--48370094 Score: 234
Period size: 40 Copynumber: 5.5 Consensus size: 40
48369864 TCGAATGATG
* *
48369874 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * * * *
48369914 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAGTGA-TATA
*
48369954 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
48369994 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* ** * * *
48370034 TCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
48370074 TCCGGGCTAGGTCCCGAAGAG
1 TCCGGGCTAAGTCCCGAAGAG
48370095 TAATCATGAT
Statistics
Matches: 151, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
39 1 0.01
40 131 0.87
41 19 0.13
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:48373049 original size:49 final size:49
Alignment explanation
Indices: 48372941--48373424 Score: 727
Period size: 49 Copynumber: 10.1 Consensus size: 49
48372931 GAAATGATAG
48372941 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
48372988 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
48373037 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* *
48373086 TACGGTCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
48373133 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
48373182 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
48373229 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * *
48373278 CAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
48373325 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * *
48373374 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
48373421 TAAG
1 TAAG
48373425 TCCCGAAGGG
Statistics
Matches: 396, Mismatches: 33, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
47 173 0.44
48 1 0.00
49 222 0.56
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:48373126 original size:96 final size:96
Alignment explanation
Indices: 48372941--48373424 Score: 783
Period size: 96 Copynumber: 5.0 Consensus size: 96
48372931 GAAATGATAG
* *
48372941 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGATAGGGCCTAATGGCCG
48373004 ATGTGATGAATGTGAAAGTGTATATATATGTGA
66 ATGTGATGAATGTGAAAGTG--TATATATGTGA
* * *
48373037 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATACGGTCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGATAGGGCCTAATGGCCG
48373102 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
48373133 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGATAGGGCCTAATGGCCG
48373198 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * * *
48373229 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGATAGGGCCTAATGGCCG
*
48373294 ACGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * * *
48373325 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGATAGGGCCTAATGGCCG
* * *
48373390 ACGTGATGGATGTGAAAGTGTATAAATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
48373421 TAAG
1 TAAG
48373425 TCCCGAAGGG
Statistics
Matches: 374, Mismatches: 12, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
96 329 0.88
98 45 0.12
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGATAGGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:48376233 original size:26 final size:27
Alignment explanation
Indices: 48376187--48376248 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
48376177 ATATTTTCTC
*
48376187 AAAATTTTACAAGGAAAAAAATCGT-T
1 AAAATTTTACAAGGAAAAAAATCGTCA
**
48376213 AAAATTTTACCAAGG-GTAAAATCGTCA
1 AAAATTTTA-CAAGGAAAAAAATCGTCA
48376240 AAAATTTTA
1 AAAATTTTA
48376249 TTGGTAGGGA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 17 0.55
27 14 0.45
ACGTcount: A:0.50, C:0.10, G:0.11, T:0.29
Consensus pattern (27 bp):
AAAATTTTACAAGGAAAAAAATCGTCA
Found at i:48377160 original size:32 final size:33
Alignment explanation
Indices: 48377123--48377192 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 33
48377113 ATTGTAGGGA
*
48377123 TATTTTAGTATAATTAGAGCTCTAATCTAAGCC
1 TATTTTAGTATAATTAGAACTCTAATCTAAGCC
48377156 -ATTTTAGTATAATTAGAACTCTAATCTAAGCC
1 TATTTTAGTATAATTAGAACTCTAATCTAAGCC
48377188 TATTT
1 TATTT
48377193 AAAAGGGTCA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
32 31 0.89
33 4 0.11
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.41
Consensus pattern (33 bp):
TATTTTAGTATAATTAGAACTCTAATCTAAGCC
Found at i:48382229 original size:27 final size:26
Alignment explanation
Indices: 48382198--48382375 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
48382188 TAAATTGTAC
48382198 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
48382225 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
48382251 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
48382279 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
48382307 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
48382334 GGCACTAAGTGTGCGAGTTGAATATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
48382361 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
48382376 GGCTCAATAT
Statistics
Matches: 125, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 99 0.79
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:48382314 original size:82 final size:81
Alignment explanation
Indices: 48382199--48382354 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
48382189 AAATTGTACA
* * *
48382199 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
48382263 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
48382280 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
48382345 TGCGAGTTGA
65 TGCGAATTGA
48382355 ATATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:48382366 original size:82 final size:81
Alignment explanation
Indices: 48382195--48382375 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
48382185 GATTAAATTG
* * *
48382195 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
*
48382260 GTGTGCGAATTGACCA
66 GTGTGCGAATTGAACA
* * ** *
48382276 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* *
48382340 AAGTGTGCGAGTTGAATA
64 AAGTGTGCGAATTGAACA
* *
48382358 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
48382376 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGAACA
Found at i:48382384 original size:27 final size:27
Alignment explanation
Indices: 48382280--48382386 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
48382270 TGACCATGCG
* * *
48382280 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * ** *
48382308 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
48382335 GCACTAAGTGTGCGAGTTGAATATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
48382362 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
48382387 CATTCGTGAA
Statistics
Matches: 65, Mismatches: 14, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
27 50 0.77
28 15 0.23
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:48386713 original size:29 final size:30
Alignment explanation
Indices: 48386680--48386737 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
48386670 CGAATTTCTC
48386680 TTATTAC-CATAGTAGCC-CAAAATTTTCAT
1 TTATTACACAT-GTAGCCACAAAATTTTCAT
* *
48386709 TTATTTCACATTTAGCCACAAAATTTTCA
1 TTATTACACATGTAGCCACAAAATTTTCA
48386738 CATTTCACAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.34, C:0.21, G:0.05, T:0.40
Consensus pattern (30 bp):
TTATTACACATGTAGCCACAAAATTTTCAT
Found at i:48388749 original size:125 final size:124
Alignment explanation
Indices: 48388526--48388897 Score: 460
Period size: 125 Copynumber: 3.0 Consensus size: 124
48388516 GGAACTACTA
* * * * *
48388526 TAGAAAAAGAGCGTCCACGTGAGAGCTTTTTTCAGTACTTTTACTGATAGTGCATCCTTCTTCAA
1 TAGAAAAAAAGCGTCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGATAGTGCATCCTGCTTGAA
* *
48388591 GCATTCTTTTACACTATTTTTTATAACATTCTTCTTAAAATTATTTTTTCAGAAACTACCG
66 GCATT-TTTTACACTA-TTTTTATAAAATTCTTCTCAAAATTATTTTTTCAGAAACTACCG
* * *
48388652 TAGAAAAAAAG-GTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTAATAATGCATCCTGCTTGAA
1 TAGAAAAAAAGCGTCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGATAGTGCATCCTGCTTGAA
* * * * *
48388716 ACATTTTTTACACTATTTTTATAATATTGTCTTCTCAAAATTATTTTCTCAAAAACTACTG
66 GCATTTTTTACACTATTTTTATAA-AAT-TCTTCTCAAAATTATTTTTTCAGAAACTACCG
* * *
48388777 TAG-AAAAAAGCGTCCACGTGGAAGCTTTTTTTCGGTACTTTTGCTGACAGTGCATCCTGCTTGA
1 TAGAAAAAAAGCGTCCACGTGGGAGC-TTTTTTCAGTACTTTTGCTGATAGTGCATCCTGCTTGA
* * * *
48388841 CGCATTTTTGACACTATTTTTTTCAAAACTATCTTCTCAAAATTATTTTTCCAGAAA
65 AGCATTTTTTACACTATTTTTAT-AAAA-T-TCTTCTCAAAATTATTTTTTCAGAAA
48388898 TTACTAGACA
Statistics
Matches: 210, Mismatches: 30, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
123 9 0.04
124 18 0.09
125 94 0.45
126 63 0.30
127 26 0.12
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (124 bp):
TAGAAAAAAAGCGTCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGATAGTGCATCCTGCTTGAA
GCATTTTTTACACTATTTTTATAAAATTCTTCTCAAAATTATTTTTTCAGAAACTACCG
Found at i:48389043 original size:34 final size:31
Alignment explanation
Indices: 48388993--48389106 Score: 99
Period size: 31 Copynumber: 3.7 Consensus size: 31
48388983 CACAAAATTA
* *
48388993 TTTTT-AAAAACTCTAAACCCTAATTTAATTTAT
1 TTTTTAAAAAACCCTAAACCCTAATTT--GTT-T
**
48389026 TTTTTAAAAAACCCTAAACATTAATTTGTTT
1 TTTTTAAAAAACCCTAAACCCTAATTTGTTT
* * * *
48389057 TATTTAAAAAACCCTAAACCTTGATTT-ATT
1 TTTTTAAAAAACCCTAAACCCTAATTTGTTT
*
48389087 TTTTTAAAAATCCC-AAACCC
1 TTTTTAAAAAACCCTAAACCC
48389107 ATAACCCCAT
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
29 5 0.07
30 14 0.20
31 25 0.36
32 2 0.03
33 5 0.07
34 18 0.26
ACGTcount: A:0.39, C:0.18, G:0.02, T:0.41
Consensus pattern (31 bp):
TTTTTAAAAAACCCTAAACCCTAATTTGTTT
Found at i:48389093 original size:30 final size:30
Alignment explanation
Indices: 48389017--48389105 Score: 119
Period size: 31 Copynumber: 3.0 Consensus size: 30
48389007 AAACCCTAAT
*
48389017 TTAATTTA-TTTTTTAAAAAACCCTAAACA
1 TTAATTTATTTTTTTAAAAAACCCTAAACC
*
48389046 TTAATTTGTTTTATTTAAAAAACCCTAAACC
1 TTAATTTATTTT-TTTAAAAAACCCTAAACC
* *
48389077 TTGATTTATTTTTTTAAAAATCCC-AAACC
1 TTAATTTATTTTTTTAAAAAACCCTAAACC
48389106 CATAACCCCA
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
29 12 0.23
30 14 0.26
31 27 0.51
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.43
Consensus pattern (30 bp):
TTAATTTATTTTTTTAAAAAACCCTAAACC
Found at i:48390128 original size:48 final size:48
Alignment explanation
Indices: 48390073--48390169 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
48390063 CACCAATCCA
48390073 AGCATTTACATACAACCAAATCAGCCACAACCAAGATATCAACACATT
1 AGCATTTACATACAACCAAATCAGCCACAACCAAGATATCAACACATT
48390121 AGCATTTACATACAACCAAATCAGCCACAACCAAGATATCAACACATT
1 AGCATTTACATACAACCAAATCAGCCACAACCAAGATATCAACACATT
48390169 A
1 A
48390170 TTCACATGCT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.46, C:0.29, G:0.06, T:0.19
Consensus pattern (48 bp):
AGCATTTACATACAACCAAATCAGCCACAACCAAGATATCAACACATT
Found at i:48391873 original size:13 final size:13
Alignment explanation
Indices: 48391855--48391879 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48391845 CCAAGCATAC
48391855 GCCCATGTCCTTG
1 GCCCATGTCCTTG
48391868 GCCCATGTCCTT
1 GCCCATGTCCTT
48391880 CACACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.40, G:0.20, T:0.32
Consensus pattern (13 bp):
GCCCATGTCCTTG
Found at i:48395647 original size:9 final size:9
Alignment explanation
Indices: 48395633--48395664 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
48395623 AAACCACAAA
48395633 TAAAATCCC
1 TAAAATCCC
48395642 TAAAATCCC
1 TAAAATCCC
48395651 TAAAATCCC
1 TAAAATCCC
48395660 -AAAAT
1 TAAAAT
48395665 TTCATCAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 5 0.22
9 18 0.78
ACGTcount: A:0.50, C:0.28, G:0.00, T:0.22
Consensus pattern (9 bp):
TAAAATCCC
Found at i:48402808 original size:14 final size:14
Alignment explanation
Indices: 48402789--48402819 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
48402779 ATTCCGAAGT
48402789 ATATATATATATAC
1 ATATATATATATAC
48402803 ATATATATATATAC
1 ATATATATATATAC
48402817 ATA
1 ATA
48402820 AGTATGCCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATATATATATAC
Found at i:48403350 original size:27 final size:28
Alignment explanation
Indices: 48403266--48403364 Score: 137
Period size: 27 Copynumber: 3.5 Consensus size: 28
48403256 CATGAGATTG
* * * *
48403266 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
48403295 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
48403323 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
48403350 GCACTGAGTGTGCGA
1 GCACTAAGTGTGCGA
48403365 ACTTAATATA
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 25 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:48403374 original size:27 final size:28
Alignment explanation
Indices: 48403294--48403376 Score: 107
Period size: 27 Copynumber: 3.0 Consensus size: 28
48403284 TAAATTGTAC
**
48403294 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAACTTGATTATAT
*
48403322 AGCACTAAGTGTGCG-AGTTGATTATAT
1 AGCACTAAGTGTGCGAACTTGATTATAT
* *
48403349 AGCACTGAGTGTGCGAACTT-AATATAT
1 AGCACTAAGTGTGCGAACTTGATTATAT
48403376 A
1 A
48403377 CTTTTGAATC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
27 31 0.63
28 18 0.37
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAACTTGATTATAT
Found at i:48416532 original size:50 final size:50
Alignment explanation
Indices: 48416410--48416638 Score: 244
Period size: 50 Copynumber: 4.6 Consensus size: 50
48416400 TGTGAGAACA
* ** *** * * *
48416410 CATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGCCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAG--TTAGGTCG
* * *
48416462 CGTGTGTAGTACTAAATGCAGGCTACTACATCTACCAGATAGTTAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAGGTCG
* * * *
48416512 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAGGTCG
* * * * *
48416562 CGTGTGTAGTACTAAGTGTAGGCTACTACATGTACCGGATTGTT-GGTTG
1 CATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAGGTCG
48416611 CATGTGTAGTACTAAGTGCAGGCTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTA
48416639 TGCATACCAG
Statistics
Matches: 148, Mismatches: 29, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
49 29 0.20
50 87 0.59
52 32 0.22
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAGGTCG
Found at i:48423294 original size:50 final size:50
Alignment explanation
Indices: 48423207--48423450 Score: 226
Period size: 50 Copynumber: 4.9 Consensus size: 50
48423197 ATTGTGAGAA
48423207 CACATGTGTAGTACTATA-TGCAGGCTACTACT-TGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTA-AGTGCAGGCTACTA-TGTGTACCAGATAGTTAGGT
** * * * * * *
48423257 TTCATGTGTAGTACTAAGTGCAGGCTATTATGCGTACCCGACAACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA-TAGTT-AGGT
* * * * * * *
48423308 CACGTGTATAGTATTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGCT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
* * ** *
48423358 CACGTGTGTAGTACTAAGTGTAGGCTACTACATGTACCAGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
* *
48423407 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG
48423451 CTTCGATTAC
Statistics
Matches: 153, Mismatches: 36, Indels: 11
0.76 0.18 0.05
Matches are distributed among these distances:
49 42 0.27
50 75 0.49
51 35 0.23
52 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
Found at i:48427397 original size:26 final size:26
Alignment explanation
Indices: 48427361--48427412 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
48427351 AAATCAAAGA
48427361 TAGAACTACTAGAAACAGGAGACTCC
1 TAGAACTACTAGAAACAGGAGACTCC
48427387 TAGAACTACTAGAAACAGGAGACTCC
1 TAGAACTACTAGAAACAGGAGACTCC
48427413 AGATGAGTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.23, G:0.19, T:0.15
Consensus pattern (26 bp):
TAGAACTACTAGAAACAGGAGACTCC
Found at i:48429820 original size:21 final size:23
Alignment explanation
Indices: 48429792--48429848 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
48429782 TATATATAAT
48429792 ATTATATATTTAAATTTTTATTG
1 ATTATATATTTAAATTTTTATTG
48429815 ATTATATATTTAAATTTTTATTG
1 ATTATATATTTAAATTTTTATTG
*
48429838 ATCATAT-TTTA
1 ATTATATATTTA
48429849 TTGTTTAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 4 0.12
23 29 0.88
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.60
Consensus pattern (23 bp):
ATTATATATTTAAATTTTTATTG
Found at i:48430150 original size:13 final size:13
Alignment explanation
Indices: 48430132--48430192 Score: 52
Period size: 13 Copynumber: 4.7 Consensus size: 13
48430122 ACCAAACTTT
48430132 TCAAAAGCATTTC
1 TCAAAAGCATTTC
*
48430145 TCAAAATCACTTT-
1 TCAAAAGCA-TTTC
* * *
48430158 TCCACAGCATTTT
1 TCAAAAGCATTTC
* *
48430171 TTAAAAGCACTTC
1 TCAAAAGCATTTC
48430184 TCAAAAGCA
1 TCAAAAGCA
48430193 ATGCTAAACT
Statistics
Matches: 36, Mismatches: 10, Indels: 4
0.72 0.20 0.08
Matches are distributed among these distances:
12 3 0.08
13 30 0.83
14 3 0.08
ACGTcount: A:0.38, C:0.25, G:0.07, T:0.31
Consensus pattern (13 bp):
TCAAAAGCATTTC
Found at i:48430176 original size:26 final size:26
Alignment explanation
Indices: 48430127--48430192 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
48430117 CTTAAACCAA
*
48430127 ACTTTTCAAAAGCATTTCTCAAAATC
1 ACTTTTCAAAAGCATTTCTCAAAAGC
* * * *
48430153 ACTTTTCCACAGCATTTTTTAAAAGC
1 ACTTTTCAAAAGCATTTCTCAAAAGC
*
48430179 ACTTCTCAAAAGCA
1 ACTTTTCAAAAGCA
48430193 ATGCTAAACT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
ACTTTTCAAAAGCATTTCTCAAAAGC
Found at i:48434157 original size:20 final size:20
Alignment explanation
Indices: 48434128--48434165 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
48434118 AATGTTAGAA
*
48434128 ATGGAAAAATGGAGAAATAT
1 ATGGAAAAATAGAGAAATAT
*
48434148 ATGGATAAATAGAGAAAT
1 ATGGAAAAATAGAGAAAT
48434166 GGAATTCCGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.24, T:0.21
Consensus pattern (20 bp):
ATGGAAAAATAGAGAAATAT
Found at i:48445205 original size:19 final size:19
Alignment explanation
Indices: 48445153--48445198 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
48445143 TAGCCATCGA
*
48445153 ATGTTGGCCTATAATGGTT
1 ATGTTGGCCTATGATGGTT
*
48445172 ATGATGGCCTATGATGGTT
1 ATGTTGGCCTATGATGGTT
48445191 ATGTTGGC
1 ATGTTGGC
48445199 TATTGATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.20, C:0.11, G:0.30, T:0.39
Consensus pattern (19 bp):
ATGTTGGCCTATGATGGTT
Found at i:48449596 original size:12 final size:12
Alignment explanation
Indices: 48449579--48449616 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
48449569 CACAGCGGCT
*
48449579 TCAACTTCACCC
1 TCAACTTCATCC
48449591 TCAACTTCATCC
1 TCAACTTCATCC
*
48449603 TCATCTTCATCC
1 TCAACTTCATCC
48449615 TC
1 TC
48449617 TAGGTCTGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.21, C:0.45, G:0.00, T:0.34
Consensus pattern (12 bp):
TCAACTTCATCC
Found at i:48462271 original size:40 final size:40
Alignment explanation
Indices: 48462213--48462397 Score: 293
Period size: 40 Copynumber: 4.6 Consensus size: 40
48462203 CGGATGATAA
* *
48462213 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
**
48462253 CCGGGCTAAGTCTTGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
48462293 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
48462333 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
48462373 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
48462398 AGCAAGTAGT
Statistics
Matches: 137, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
40 136 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:48462412 original size:80 final size:79
Alignment explanation
Indices: 48462209--48462429 Score: 286
Period size: 80 Copynumber: 2.8 Consensus size: 79
48462199 TATTCGGATG
* * **
48462209 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCTTGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ATTATA-TCCGGGCTAAGTCCCGAAGGC
48462273 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * *
48462289 A-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGC
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TATTATATCCGGGCTAAGTCCCGAAGGC
48462353 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * *
48462369 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGTTATATTC-GGCTAAATCCCGAAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTA-TTATATCCGGGCTAAGTCCCGAAG
48462430 ATGCTTGGGT
Statistics
Matches: 126, Mismatches: 10, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
79 17 0.13
80 106 0.84
81 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTATTATATCCGGGCTAAGTCCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:48462697 original size:22 final size:21
Alignment explanation
Indices: 48462656--48462699 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
48462646 GAATGTGCAT
48462656 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
48462678 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
48462700 GAAAGTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:48468294 original size:40 final size:40
Alignment explanation
Indices: 48468249--48468400 Score: 207
Period size: 40 Copynumber: 3.8 Consensus size: 40
48468239 ATAACCACAA
* * *
48468249 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
48468289 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
48468329 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
48468369 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
48468401 CATTCAAATG
Statistics
Matches: 102, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 97 0.95
41 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:48476030 original size:40 final size:40
Alignment explanation
Indices: 48475975--48476126 Score: 198
Period size: 40 Copynumber: 3.8 Consensus size: 40
48475965 ATAACCACAA
* * * *
48475975 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
48476015 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * * *
48476055 GCACGAATGCCTTCAGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
48476095 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
48476127 CATTCAAATG
Statistics
Matches: 98, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 93 0.95
41 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:48480698 original size:40 final size:40
Alignment explanation
Indices: 48480643--48480874 Score: 360
Period size: 40 Copynumber: 5.8 Consensus size: 40
48480633 CGAATGATAA
* *
48480643 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA-T
48480683 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA-T
*
48480723 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
*
48480763 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
* * *
48480803 CCGGGCTAAGTCCCGAACGAATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
*
48480843 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT
48480875 AGTTATATTC
Statistics
Matches: 181, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
40 180 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
Found at i:48492120 original size:20 final size:20
Alignment explanation
Indices: 48492097--48492140 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
48492087 AAGAAATTCA
48492097 GAGTTAATTCAGATGATTTT
1 GAGTTAATTCAGATGATTTT
48492117 GAGTTAATTCAGATGATTTT
1 GAGTTAATTCAGATGATTTT
48492137 GAGT
1 GAGT
48492141 GAAGCTCACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.30, C:0.05, G:0.23, T:0.43
Consensus pattern (20 bp):
GAGTTAATTCAGATGATTTT
Found at i:48495174 original size:30 final size:30
Alignment explanation
Indices: 48495135--48495199 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
48495125 GTCTTAGCTG
* *
48495135 TGTGCGACACACGGTCACGTTACACAGCCC
1 TGTGTGACACACGGTCACATTACACAGCCC
*
48495165 TGTGTGACACACGGTCACATTACACAGCCG
1 TGTGTGACACACGGTCACATTACACAGCCC
48495195 TGTGT
1 TGTGT
48495200 CCCTTGGGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.22
Consensus pattern (30 bp):
TGTGTGACACACGGTCACATTACACAGCCC
Found at i:48505184 original size:5 final size:5
Alignment explanation
Indices: 48505174--48505232 Score: 59
Period size: 5 Copynumber: 11.2 Consensus size: 5
48505164 TGAATCCTCC
48505174 TATTT TATTT T-TATT TATTCT TATTT TA-TT TATTT TATTCT TATTT
1 TATTT TATTT TAT-TT TATT-T TATTT TATTT TATTT TATT-T TATTT
48505220 TACTTTT TATTT T
1 TA--TTT TATTT T
48505233 TGATTTTTCA
Statistics
Matches: 47, Mismatches: 0, Indels: 14
0.77 0.00 0.23
Matches are distributed among these distances:
4 5 0.11
5 26 0.55
6 11 0.23
7 5 0.11
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.76
Consensus pattern (5 bp):
TATTT
Found at i:48505200 original size:15 final size:14
Alignment explanation
Indices: 48505174--48505219 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 14
48505164 TGAATCCTCC
48505174 TATTTTATTTTTATT
1 TATTTTA-TTTTATT
48505189 TATTCTTATTTTATT
1 TATT-TTATTTTATT
48505204 TATTTTATTCTTATT
1 TATTTTATT-TTATT
48505219 T
1 T
48505220 TACTTTTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
14 5 0.17
15 21 0.72
16 3 0.10
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (14 bp):
TATTTTATTTTATT
Found at i:48505212 original size:20 final size:21
Alignment explanation
Indices: 48505174--48505231 Score: 82
Period size: 20 Copynumber: 2.8 Consensus size: 21
48505164 TGAATCCTCC
*
48505174 TATTTTATTTTTATTTATTCT
1 TATTTTATTTATATTTATTCT
48505195 TATTTTATTTAT-TTTATTCT
1 TATTTTATTTATATTTATTCT
*
48505215 TATTTTACTTTTTATTT
1 TATTTTA-TTTATATTT
48505232 TTGATTTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
20 15 0.45
21 15 0.45
22 3 0.09
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.76
Consensus pattern (21 bp):
TATTTTATTTATATTTATTCT
Found at i:48505239 original size:30 final size:30
Alignment explanation
Indices: 48505174--48505231 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
48505164 TGAATCCTCC
* *
48505174 TATTTTATTTTTATTTATTCTTATTTTATT
1 TATTTTATTCTTATTTATACTTATTTTATT
48505204 TATTTTATTCTTATTT-TAC-T-TTTTATT
1 TATTTTATTCTTATTTATACTTATTTTATT
48505231 T
1 T
48505232 TTGATTTTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 8 0.31
28 1 0.04
29 2 0.08
30 15 0.58
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.76
Consensus pattern (30 bp):
TATTTTATTCTTATTTATACTTATTTTATT
Found at i:48513623 original size:21 final size:21
Alignment explanation
Indices: 48513597--48513637 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
48513587 CTTGTATGGA
48513597 CCTATGAGGTCCAAAACATAG
1 CCTATGAGGTCCAAAACATAG
48513618 CCTATGAGGTCCAAAACATA
1 CCTATGAGGTCCAAAACATA
48513638 CATCGGAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.39, C:0.24, G:0.17, T:0.20
Consensus pattern (21 bp):
CCTATGAGGTCCAAAACATAG
Done.