Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 150 of 333
Found at i:49107241 original size:92 final size:93
Alignment explanation
Indices: 49107132--49107301 Score: 261
Period size: 92 Copynumber: 1.8 Consensus size: 93
49107122 GCGCCTAAGT
* * * *
49107132 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGATCTTGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
49107197 -GAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
49107224 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
49107289 CGAGTTCGGATGC
66 CGAGTTCGGATGC
49107302 TCAACCATCC
Statistics
Matches: 69, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
92 57 0.83
93 12 0.17
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:49107274 original size:46 final size:46
Alignment explanation
Indices: 49107127--49107298 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
49107117 AACCCGCGCC
* * * * *
49107127 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * * *
49107173 TAAATGATCTTGGACTCAACTCAA-GAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
49107220 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
49107265 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
49107299 TGCTCAACCA
Statistics
Matches: 100, Mismatches: 18, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 9 0.09
46 66 0.66
47 11 0.11
48 2 0.02
49 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:49113479 original size:40 final size:40
Alignment explanation
Indices: 49113420--49113607 Score: 322
Period size: 40 Copynumber: 4.7 Consensus size: 40
49113410 GAGCATTGGA
* *
49113420 ATATATCCGGGCTAAGACCCGAAGGCAATTACGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
* *
49113460 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
49113500 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
49113540 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
* *
49113580 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
49113608 ATGTGTTTGC
Statistics
Matches: 142, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
Found at i:49116705 original size:28 final size:28
Alignment explanation
Indices: 49116667--49116750 Score: 107
Period size: 29 Copynumber: 3.0 Consensus size: 28
49116657 CAAGTCTACA
* * *
49116667 TACATGCATATGGCCCACTATGCCCAAT
1 TACATTCATATGGCCCATTAGGCCCAAT
49116695 CT-CATTCATATGGCCCATTAGGCCCAAAT
1 -TACATTCATATGGCCCATTAGGCCC-AAT
*
49116724 TACATTCGTATGGCCCATTAGGCCCAA
1 TACATTCATATGGCCCATTAGGCCCAA
49116751 CCTTTACTGA
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
28 23 0.47
29 26 0.53
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.26
Consensus pattern (28 bp):
TACATTCATATGGCCCATTAGGCCCAAT
Found at i:49142494 original size:27 final size:27
Alignment explanation
Indices: 49142439--49142495 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
49142429 TACTATTTTT
* * *
49142439 CCCTTATGTGGTAAGATGATTATTTTG
1 CCCTTATATGGTAAGATAATTATTATG
49142466 CCCTTATATGGTAAGATAACTTA-TATG
1 CCCTTATATGGTAAGATAA-TTATTATG
49142493 CCC
1 CCC
49142496 CTATGTGATG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 23 0.88
28 3 0.12
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.39
Consensus pattern (27 bp):
CCCTTATATGGTAAGATAATTATTATG
Found at i:49142863 original size:18 final size:18
Alignment explanation
Indices: 49142840--49142879 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
49142830 TTTAAACTGT
49142840 TACTGCACTGATTACTAC
1 TACTGCACTGATTACTAC
* *
49142858 TACTGCACTGTTTACTGC
1 TACTGCACTGATTACTAC
49142876 TACT
1 TACT
49142880 ATAATGGGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.28, G:0.12, T:0.38
Consensus pattern (18 bp):
TACTGCACTGATTACTAC
Found at i:49147212 original size:56 final size:56
Alignment explanation
Indices: 49147051--49147186 Score: 227
Period size: 56 Copynumber: 2.4 Consensus size: 56
49147041 CCCATGGCAT
*
49147051 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
* *
49147107 CGATATATGTGTGCGAGTAAGACCACGTTTCATACGTTAGCATCGATATGTGATTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
* *
49147163 CGTTATATGTGTGTGAGTAAGACC
1 CGATATATGTGTGCGAGTAAGACC
49147187 CTATTTGGAA
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 75 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.32
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
Found at i:49161424 original size:27 final size:27
Alignment explanation
Indices: 49161394--49161472 Score: 124
Period size: 27 Copynumber: 2.9 Consensus size: 27
49161384 GTCACAAGAT
49161394 ACAGATA-TTGTGGTAGAGCCACCAGAA
1 ACAGATATTTGTGGTAGAGCCACCAG-A
*
49161421 ACAGATATTTGTGGCAGAGCCACCAGA
1 ACAGATATTTGTGGTAGAGCCACCAGA
*
49161448 TCAGATATTTGTGGTAGAGCCACCA
1 ACAGATATTTGTGGTAGAGCCACCA
49161473 AAATGCTTCC
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
27 31 0.65
28 17 0.35
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (27 bp):
ACAGATATTTGTGGTAGAGCCACCAGA
Found at i:49161439 original size:28 final size:27
Alignment explanation
Indices: 49161368--49161472 Score: 113
Period size: 27 Copynumber: 3.9 Consensus size: 27
49161358 GCTGCCAGAG
* * * * *
49161368 CAGATATTGTGACAAAGTCACAAGATA
1 CAGATATTGTGGCAGAGCCACCAGAAA
*
49161395 CAGATATTGTGGTAGAGCCACCAGAAA
1 CAGATATTGTGGCAGAGCCACCAGAAA
*
49161422 CAGATATTTGTGGCAGAGCCACCAG-AT
1 CAGATA-TTGTGGCAGAGCCACCAGAAA
*
49161449 CAGATATTTGTGGTAGAGCCACCA
1 CAGATA-TTGTGGCAGAGCCACCA
49161473 AAATGCTTCC
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 51 0.75
28 17 0.25
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGAAA
Found at i:49161466 original size:55 final size:54
Alignment explanation
Indices: 49161368--49161472 Score: 149
Period size: 55 Copynumber: 1.9 Consensus size: 54
49161358 GCTGCCAGAG
*
49161368 CAGATATTGTGACAAAGTCACAAGATACAGATATTGTGGTAGAGCCACCAGAAA
1 CAGATATTGTGACAAAGCCACAAGATACAGATATTGTGGTAGAGCCACCAGAAA
* * *
49161422 CAGATATTTGTGGCAGAGCCACCAGAT-CAGATATTTGTGGTAGAGCCACCA
1 CAGATA-TTGTGACAAAGCCACAAGATACAGATA-TTGTGGTAGAGCCACCA
49161473 AAATGCTTCC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
54 12 0.27
55 33 0.73
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (54 bp):
CAGATATTGTGACAAAGCCACAAGATACAGATATTGTGGTAGAGCCACCAGAAA
Found at i:49161607 original size:26 final size:27
Alignment explanation
Indices: 49161578--49161641 Score: 103
Period size: 26 Copynumber: 2.4 Consensus size: 27
49161568 CAAAATTAAC
49161578 CCTAGGGGTATAATGGTAATTTT-ACA
1 CCTAGGGGTATAATGGTAATTTTCACA
*
49161604 CCTAGGGGTATAATGGTAATTTTCATA
1 CCTAGGGGTATAATGGTAATTTTCACA
*
49161631 CTTAGGGGTAT
1 CCTAGGGGTAT
49161642 TTTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 23 0.66
27 12 0.34
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.36
Consensus pattern (27 bp):
CCTAGGGGTATAATGGTAATTTTCACA
Found at i:49163085 original size:47 final size:47
Alignment explanation
Indices: 49163006--49163131 Score: 189
Period size: 47 Copynumber: 2.7 Consensus size: 47
49162996 GGTATAATGC
* * *
49163006 CAATGCCATGTCCCAGACATGGTCATATACTGGCTCATCCATCAAGT
1 CAATACCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
*
49163053 CAATATCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
1 CAATACCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
* * *
49163100 CGATGCCATGTCCAAGACATGGTCTTACACTG
1 CAATACCATGTCCCAGACATGGTCTTACACTG
49163132 ACTATCGAAA
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.26
Consensus pattern (47 bp):
CAATACCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
Found at i:49163169 original size:49 final size:47
Alignment explanation
Indices: 49163010--49163321 Score: 174
Period size: 47 Copynumber: 6.6 Consensus size: 47
49163000 TAATGCCAAT
* * * * * *
49163010 GCCATGTCCCAGACATGGTCATATACTGGCTCATCCATCAAGTCAAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGTCGAC
** * * *
49163057 ATCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGTCGAC
* * *
49163104 GCCATGTCCAAGACATGGTCTTACACTGACT-ATCGAAACTGAGGTCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATC--AA-TCAAGTCGAC
* * *
49163153 GCTATGTCCCAGACATGGTCTTACACT-AGCTTTCA-CATATTC--GTGCAAAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-C--TCATCA-A-TCAAGT-C-GAC
* * * * * * *
49163203 GCCATGTCCCAGACATGGTCTTACATTGACACCTCTATACATG-CTAAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATCAAT-CAAGTC-GAC
* * * ** * *
49163251 GCCATGTCCCGGACATGGTCTTACACTGACACATC-TTGTAGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGTCGAC
49163297 G-CATGTCCCAGACAT-GTCTTACACT
1 GCCATGTCCCAGACATGGTCTTACACT
49163322 AGCTCTCATA
Statistics
Matches: 215, Mismatches: 34, Indels: 35
0.76 0.12 0.12
Matches are distributed among these distances:
44 10 0.05
45 13 0.06
46 7 0.03
47 72 0.33
48 43 0.20
49 36 0.17
50 30 0.14
51 3 0.01
52 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (47 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGTCGAC
Found at i:49163222 original size:50 final size:47
Alignment explanation
Indices: 49163156--49163375 Score: 175
Period size: 46 Copynumber: 4.7 Consensus size: 47
49163146 GGTCGACGCT
*
49163156 ATGTCCCAGACATGGTCTTACACTAGCTTTCACATATTCGT-GCAAATGCC
1 ATGTCCCAGACATGGTCTTACACTAGC--TCACATATT-GTAGCCAATG-C
* * * * ** *
49163206 ATGTCCCAGACATGGTCTTACA-TTG-ACACCTCTATACATGCTAATGCC
1 ATGTCCCAGACATGGTCTTACACTAGCTCACATAT-TGTA-GCCAATG-C
* * * *
49163254 ATGTCCCGGACATGGTCTTACACT-G-ACACATCTTGTAGCCGATGC
1 ATGTCCCAGACATGGTCTTACACTAGCTCACATATTGTAGCCAATGC
* * * *
49163299 ATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGTGGCCGATGC
1 ATGTCCCAGACATGGTCTTACACTAGCTCACATATTGTAGCCAATGC
*
49163345 ATGTCCCAGACAT-GTCTTACACTAGCACACA
1 ATGTCCCAGACATGGTCTTACACTAGCTCACA
49163376 AATAACCCGA
Statistics
Matches: 143, Mismatches: 21, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
44 10 0.07
45 14 0.10
46 54 0.38
47 3 0.02
48 37 0.26
49 3 0.02
50 22 0.15
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (47 bp):
ATGTCCCAGACATGGTCTTACACTAGCTCACATATTGTAGCCAATGC
Found at i:49165479 original size:29 final size:29
Alignment explanation
Indices: 49165447--49165518 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 29
49165437 GACATATCTT
* *
49165447 GCCCAGTTCATATTCTTATGGCCCACTAG
1 GCCCAATTCATATTCATATGGCCCACTAG
* * *
49165476 GCCCAATTCACATTCATATGGCCCATTAT
1 GCCCAATTCATATTCATATGGCCCACTAG
*
49165505 GCCCAAATCATATT
1 GCCCAATTCATATT
49165519 ATACTCATGC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (29 bp):
GCCCAATTCATATTCATATGGCCCACTAG
Found at i:49165516 original size:58 final size:57
Alignment explanation
Indices: 49165406--49165518 Score: 129
Period size: 58 Copynumber: 2.0 Consensus size: 57
49165396 CATACATGCA
* * * * **
49165406 TATGGCCCATTGGGCCCAATCGCATTCATATGACATATCTTGCCCAGTTCATATTCT
1 TATGGCCCACTAGGCCCAATCACATTCATATGACACATCTTGCCCAAATCATATTCT
* *
49165463 TATGGCCCACTAGGCCCAATTCACATTCATATGGCCCAT-TATGCCCAAATCATATT
1 TATGGCCCACTAGGCCCAA-TCACATTCATATGACACATCT-TGCCCAAATCATATT
49165519 ATACTCATGC
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
57 18 0.39
58 28 0.61
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.31
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCACATTCATATGACACATCTTGCCCAAATCATATTCT
Found at i:49165616 original size:19 final size:19
Alignment explanation
Indices: 49165592--49165629 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
49165582 ACGCCCATCA
*
49165592 GGCCCATTTAGCCCATTCT
1 GGCCCATTTAGCCAATTCT
*
49165611 GGCCCATTTGGCCAATTCT
1 GGCCCATTTAGCCAATTCT
49165630 CAACCCAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.16, C:0.34, G:0.18, T:0.32
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTCT
Found at i:49165752 original size:16 final size:16
Alignment explanation
Indices: 49165739--49165784 Score: 65
Period size: 16 Copynumber: 2.9 Consensus size: 16
49165729 CGGCTTTTTA
49165739 GCATTTTAGCTTTTCG
1 GCATTTTAGCTTTTCG
* **
49165755 GCATTTTGGCAATTCG
1 GCATTTTAGCTTTTCG
49165771 GCATTTTAGCTTTT
1 GCATTTTAGCTTTT
49165785 GCCGATTCAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.15, C:0.17, G:0.20, T:0.48
Consensus pattern (16 bp):
GCATTTTAGCTTTTCG
Found at i:49168161 original size:56 final size:56
Alignment explanation
Indices: 49168095--49168433 Score: 426
Period size: 56 Copynumber: 6.2 Consensus size: 56
49168085 TCCCAGACAA
* * * * * *
49168095 GGTCTTACTCGTAAACACATATCGGAATCACCTATTGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACACATATCAGAATCACATATCGATGCCAATGTATTAAACGT
**
49168151 GGTCTTACTCGCACACACATATTGGAATCAC--AT--AT--C--TGTATTAAACGT
1 GGTCTTACTCGCACACACATATCAGAATCACATATCGATGCCAATGTATTAAACGT
* *
49168199 GGTCTTACTCGCATACACATATCAGAATCACATATCGAGGCCAATGTATTAAACGT
1 GGTCTTACTCGCACACACATATCAGAATCACATATCGATGCCAATGTATTAAACGT
* * * *
49168255 GGTCTTACTCGTACACACAAATC-GAAATCACATATCGATGCCAACGTATTAAACAT
1 GGTCTTACTCGCACACACATATCAG-AATCACATATCGATGCCAATGTATTAAACGT
* *
49168311 GGTCTTACTTGCACACACATATCAAAATCACATATCGATGCCAATGTATTAAACGT
1 GGTCTTACTCGCACACACATATCAGAATCACATATCGATGCCAATGTATTAAACGT
* * * *
49168367 GGTCTTACTTGCACACACATATTAGAATCATATATCGATGCCAATGTATTAAACAT
1 GGTCTTACTCGCACACACATATCAGAATCACATATCGATGCCAATGTATTAAACGT
49168423 GGTCTTACTCG
1 GGTCTTACTCG
49168434 TAATCACATG
Statistics
Matches: 248, Mismatches: 25, Indels: 20
0.85 0.09 0.07
Matches are distributed among these distances:
48 39 0.16
50 3 0.01
52 3 0.01
54 3 0.01
55 1 0.00
56 199 0.80
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCGCACACACATATCAGAATCACATATCGATGCCAATGTATTAAACGT
Found at i:49168332 original size:160 final size:164
Alignment explanation
Indices: 49168095--49168441 Score: 477
Period size: 168 Copynumber: 2.1 Consensus size: 164
49168085 TCCCAGACAA
* * * * *
49168095 GGTCTTACTCGTAAACACATATCGGAATCACCTATTGATGCCAACGTATTAAACGTGGTCTTACT
1 GGTCTTACTCGTAAACACAAATCGAAATCACATATCGATGCCAACGTATTAAACATGGTCTTACT
*** *
49168160 CGCACACACATATTGGAATCAC-AT-AT-C-TGTATTAAACGTGGTCTTACTCGCATACACATAT
66 CGCACACACATATCAAAATCACAATCATCCATGTATTAAACGTGGTCTTACTCGCACACACATAT
*
49168221 CAGAATCACATATCGAGGCCAATGTATTAAACGT
131 CAGAATCACATATCGAGGCCAATGTATTAAACAT
*
49168255 GGTCTTACTCGTACACACAAATCGAAATCACATATCGATGCCAACGTATTAAACATGGTCTTACT
1 GGTCTTACTCGTAAACACAAATCGAAATCACATATCGATGCCAACGTATTAAACATGGTCTTACT
* *
49168320 TGCACACACATATCAAAATCACATATCGATGCCAATGTATTAAACGTGGTCTTACTTGCACACAC
66 CGCACACACATATCAAAATCACA-ATC-AT-CC-ATGTATTAAACGTGGTCTTACTCGCACACAC
* * *
49168385 ATATTAGAATCATATATCGATGCCAATGTATTAAACAT
127 ATATCAGAATCACATATCGAGGCCAATGTATTAAACAT
*
49168423 GGTCTTACTCGTAATCACA
1 GGTCTTACTCGTAAACACA
49168442 TGTCGATGCC
Statistics
Matches: 161, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
160 77 0.48
162 2 0.01
164 2 0.01
166 1 0.01
168 79 0.49
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (164 bp):
GGTCTTACTCGTAAACACAAATCGAAATCACATATCGATGCCAACGTATTAAACATGGTCTTACT
CGCACACACATATCAAAATCACAATCATCCATGTATTAAACGTGGTCTTACTCGCACACACATAT
CAGAATCACATATCGAGGCCAATGTATTAAACAT
Found at i:49168453 original size:43 final size:43
Alignment explanation
Indices: 49168392--49168617 Score: 274
Period size: 43 Copynumber: 5.3 Consensus size: 43
49168382 CACATATTAG
* *** *
49168392 AATCATATATCGATGCCAATGTATTAAACATGGTCTTACTCGT
1 AATCACATATCGATGCCAATGTCCCAAACATGGTCTTACACGT
* * *
49168435 AATCACATGTCGATGCCAACGTCCCAAACATGGTCTTACATGT
1 AATCACATATCGATGCCAATGTCCCAAACATGGTCTTACACGT
* * * *
49168478 AATCACATATCAATGCCAATATCCCAGACGTGGTCTTACACGT
1 AATCACATATCGATGCCAATGTCCCAAACATGGTCTTACACGT
* * **
49168521 AATCACATATCGATGCCAACGTCCCAGACATACTCTTACACGT
1 AATCACATATCGATGCCAATGTCCCAAACATGGTCTTACACGT
* *
49168564 AATCACATATCGATGCCAATGTCCCAGAA-GTGGTGTTACACGT
1 AATCACATATCGATGCCAATGTCCCA-AACATGGTCTTACACGT
49168607 AATCACATATC
1 AATCACATATC
49168618 AAAAATCCTA
Statistics
Matches: 155, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
43 154 0.99
44 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (43 bp):
AATCACATATCGATGCCAATGTCCCAAACATGGTCTTACACGT
Found at i:49168537 original size:86 final size:86
Alignment explanation
Indices: 49168422--49168617 Score: 302
Period size: 86 Copynumber: 2.3 Consensus size: 86
49168412 GTATTAAACA
* * ** *
49168422 TGGTCTTACTCGTAATCACATGTCGATGCCAACGTCCCAAACATGGTCTTACATGTAATCACATA
1 TGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAAACATACTCTTACACGTAATCACATA
*
49168487 TCAATGCCAATATCCCAGACG
66 TCAATGCCAATATCCCAGAAG
*
49168508 TGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACATACTCTTACACGTAATCACATA
1 TGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAAACATACTCTTACACGTAATCACATA
* *
49168573 TCGATGCCAATGTCCCAGAAG
66 TCAATGCCAATATCCCAGAAG
*
49168594 TGGTGTTACACGTAATCACATATC
1 TGGTCTTACACGTAATCACATATC
49168618 AAAAATCCTA
Statistics
Matches: 100, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
86 100 1.00
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (86 bp):
TGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAAACATACTCTTACACGTAATCACATA
TCAATGCCAATATCCCAGAAG
Found at i:49181150 original size:15 final size:15
Alignment explanation
Indices: 49181126--49181170 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
49181116 AATGATATCA
49181126 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
* * *
49181141 TATTTTGGATTCCTC
1 TATCTTGGATTTCTT
*
49181156 TATCTTGGTTTTCTT
1 TATCTTGGATTTCTT
49181171 ATCATCTTTA
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.11, C:0.16, G:0.13, T:0.60
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:49183575 original size:42 final size:42
Alignment explanation
Indices: 49183495--49183645 Score: 131
Period size: 42 Copynumber: 3.6 Consensus size: 42
49183485 TGTGTTATCA
* * * * * * *
49183495 TGTAAGACCATATCTGGGATACGGCTTTGATATGAGATTTCG
1 TGTAAGACCATATCTAGGACATGGCATCGAAATAAGATTTCG
*
49183537 TGTAAGACCATGTCTAGGACATGGCATCGAAATAAGATTTTCG
1 TGTAAGACCATATCTAGGACATGGCATCGAAATAAGA-TTTCG
* * * ** ** *
49183580 TATAAGACCATATCTGGGATATGGCATCGATGTAAGATCCCA
1 TGTAAGACCATATCTAGGACATGGCATCGAAATAAGATTTCG
* *
49183622 TGTAAGACCACATTTAGGACATGG
1 TGTAAGACCATATCTAGGACATGG
49183646 TATTGGCATC
Statistics
Matches: 86, Mismatches: 22, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
42 50 0.58
43 36 0.42
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATATCTAGGACATGGCATCGAAATAAGATTTCG
Found at i:49183616 original size:43 final size:43
Alignment explanation
Indices: 49183444--49183617 Score: 154
Period size: 43 Copynumber: 4.0 Consensus size: 43
49183434 TGATGAGATC
* *
49183444 TCGTATAAGACCATATCTGGGATATGGCATCGGCATCGTTATG-TGTT
1 TCGTATAAGACCATATCTGGGATATGGCATC-G-AT--ATAAGAT-TT
* * * * * *
49183491 ATCATGTAAGACCATATCTGGGATACGGCTTTGATATGAGA-TT
1 -TCGTATAAGACCATATCTGGGATATGGCATCGATATAAGATTT
* * * * *
49183534 TCGTGTAAGACCATGTCTAGGACATGGCATCGAAATAAGATTT
1 TCGTATAAGACCATATCTGGGATATGGCATCGATATAAGATTT
*
49183577 TCGTATAAGACCATATCTGGGATATGGCATCGATGTAAGAT
1 TCGTATAAGACCATATCTGGGATATGGCATCGATATAAGAT
49183618 CCCATGTAAG
Statistics
Matches: 101, Mismatches: 23, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
42 31 0.31
43 39 0.39
44 2 0.02
46 2 0.02
47 1 0.01
48 26 0.26
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (43 bp):
TCGTATAAGACCATATCTGGGATATGGCATCGATATAAGATTT
Found at i:49185422 original size:18 final size:18
Alignment explanation
Indices: 49185399--49185437 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
49185389 GTCGCAAGAG
49185399 AGTAAACCT-CCCACAATT
1 AGTAAA-CTGCCCACAATT
49185417 AGTAAACTGCCCACAATT
1 AGTAAACTGCCCACAATT
49185435 AGT
1 AGT
49185438 CAAAAAGGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 2 0.10
18 18 0.90
ACGTcount: A:0.38, C:0.28, G:0.10, T:0.23
Consensus pattern (18 bp):
AGTAAACTGCCCACAATT
Found at i:49189256 original size:72 final size:72
Alignment explanation
Indices: 49189139--49189281 Score: 241
Period size: 72 Copynumber: 2.0 Consensus size: 72
49189129 CAGGGCACAC
** * *
49189139 ACCCGTGTCCCCCAATTTCAGCCTGTGTGATTTGCGAATTTCAAATTTAGGCGCATCTGACATTT
1 ACCCGTGTCCCCCAATTTCAGCCCATGTGATTCGCGAATTTCAAATTTAGGCACATCTGACATTT
49189204 AGTACAT
66 AGTACAT
*
49189211 ACCCGTGTCCCCCAATTTCAGCCCATGTGATTCGCGAATTTCAAATTTGGGCACATCTGACATTT
1 ACCCGTGTCCCCCAATTTCAGCCCATGTGATTCGCGAATTTCAAATTTAGGCACATCTGACATTT
49189276 AGTACA
66 AGTACA
49189282 CGCCTGTGTT
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 66 1.00
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.31
Consensus pattern (72 bp):
ACCCGTGTCCCCCAATTTCAGCCCATGTGATTCGCGAATTTCAAATTTAGGCACATCTGACATTT
AGTACAT
Found at i:49204262 original size:39 final size:40
Alignment explanation
Indices: 49204167--49204428 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
49204157 TTGAATGATG
*
49204167 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
49204205 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
49204246 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
49204285 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
49204324 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
49204363 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
49204402 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
49204429 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:49211443 original size:43 final size:42
Alignment explanation
Indices: 49211372--49211481 Score: 150
Period size: 43 Copynumber: 2.6 Consensus size: 42
49211362 GAGATTAGTA
* * *
49211372 TAAGACCATATCTGGGATATGGCATCGATATGAGA-CTTCGTG
1 TAAGACCATATCTAGGATATGGCATCGATATGAGATC-CCATG
* *
49211414 TAAGACCATAGCTAGGCTATTGGCATCGATATGAGATCCCATG
1 TAAGACCATATCTAGGATA-TGGCATCGATATGAGATCCCATG
49211457 TAAGACCATATCTAGGATATGGCAT
1 TAAGACCATATCTAGGATATGGCAT
49211482 TGGTATGGTG
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
42 22 0.37
43 36 0.61
44 1 0.02
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (42 bp):
TAAGACCATATCTAGGATATGGCATCGATATGAGATCCCATG
Found at i:49214181 original size:46 final size:47
Alignment explanation
Indices: 49214073--49214199 Score: 150
Period size: 46 Copynumber: 2.7 Consensus size: 47
49214063 AAGCTGACGC
* * * * *
49214073 CATGTCCTAGACAGGTCTTACACTAGCTTGTATATCCCAAGGCTAATG
1 CATGTCCCAGACATGTCTTACACTAGC-TCTACATCCCAAGGCCAATG
* * *
49214121 CATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACATCCCAAGGCCAATG
*
49214167 CATGTCCCAGACATGTCTTACACTGGCTC-ACAT
1 CATGTCCCAGACATGTCTTACACTAGCTCTACAT
49214200 ACCACCCAAT
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 42 0.61
47 2 0.03
48 25 0.36
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTACATCCCAAGGCCAATG
Found at i:49218043 original size:48 final size:48
Alignment explanation
Indices: 49217972--49218303 Score: 339
Period size: 48 Copynumber: 6.9 Consensus size: 48
49217962 AGGGTAAATT
** * *
49217972 GCCGATGCCATGTCTTAGACATGGTCTTACACTGGCT-TACATGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATATCGAG
* * *
49218020 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAG
* * * *
49218068 GTCGATGCCATGTCCTAGACATGGTCTTAC-CTGGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCGAG
* * * * *
49218115 GCCGACGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCGAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAG
* * * * * *
49218163 ACCGATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCATAAC-ATT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGA-G
* * * *
49218211 GCCGATGCCATGTTCCAAACATGGTCTTACATTAGCTCTCATATCGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAG
* * * *
49218259 GCCGACGCCATGTCTCAGACATGGTCTTACACTAGCACACATATC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC
49218304 ACCCAATGTC
Statistics
Matches: 235, Mismatches: 43, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
47 39 0.17
48 195 0.83
49 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAG
Found at i:49218254 original size:96 final size:96
Alignment explanation
Indices: 49217972--49218291 Score: 376
Period size: 96 Copynumber: 3.3 Consensus size: 96
49217962 AGGGTAAATT
** **
49217972 GCCGATGCCATGTCTTAGACATGGTCTTACACTGGCT-TACATGTCGA-GGCCGATGCCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAC-ATGGCCGATGCCATGTCC
* * * *
49218035 CAGACATGGTCTTACACTAGCTCTCATCTCAAT
64 CAAACATGGTCTTACACTAGCTCTCATATCGAC
* * ** *
49218068 GTCGATGCCATGTCCTAGACATGGTCTTAC-CTGGCTCTCATAATGTGGCCGACGCCATGTCCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATGGCCGATGCCATGTCCCA
* *
49218132 AACATGGTCTTACACTAGCACACATATCGAC
66 AACATGGTCTTACACTAGCTCTCATATCGAC
* * * * *
49218163 ACCGATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCATAACATTGCCGATGCCATGTTCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATGGCCGATGCCATGTCCCA
* **
49218228 AACATGGTCTTACATTAGCTCTCATATCGTG
66 AACATGGTCTTACACTAGCTCTCATATCGAC
* *
49218259 GCCGACGCCATGTCTCAGACATGGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
49218292 AGCACACATA
Statistics
Matches: 188, Mismatches: 33, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
95 77 0.41
96 111 0.59
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATGGCCGATGCCATGTCCCA
AACATGGTCTTACACTAGCTCTCATATCGAC
Found at i:49219634 original size:56 final size:58
Alignment explanation
Indices: 49219499--49219647 Score: 164
Period size: 56 Copynumber: 2.6 Consensus size: 58
49219489 TATTGACCTT
* * * * * *
49219499 GTTATAGAAAAGATTTAGCCCGAACGGGTAATCCTAATATAATACCTCTCGAGTATAC
1 GTTATATAAAGGATTTAGCCTGGACTGGTAATCCTAATATAATACCTCTCGAGCATAC
* *
49219557 GTTATGAT-TAGGGTTTAGCCTGGACTGGTAATCCTAAT-TGAACT-CCT-T-GAGCATAC
1 GTTAT-ATAAAGGATTTAGCCTGGACTGGTAATCCTAATAT-AA-TACCTCTCGAGCATAC
49219613 GTTATATAAAGGATTTAGCCTGGACTGGTAATCCT
1 GTTATATAAAGGATTTAGCCTGGACTGGTAATCCT
49219648 GTTATACAAT
Statistics
Matches: 77, Mismatches: 10, Indels: 10
0.79 0.10 0.10
Matches are distributed among these distances:
55 2 0.03
56 37 0.48
57 2 0.03
58 34 0.44
59 2 0.03
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (58 bp):
GTTATATAAAGGATTTAGCCTGGACTGGTAATCCTAATATAATACCTCTCGAGCATAC
Found at i:49222094 original size:37 final size:37
Alignment explanation
Indices: 49222053--49222125 Score: 110
Period size: 37 Copynumber: 2.0 Consensus size: 37
49222043 GGCACTTTGG
*
49222053 TGCATTTCATTTCAGAGCATAGGTTGGAGCACTTCAA
1 TGCATTGCATTTCAGAGCATAGGTTGGAGCACTTCAA
** *
49222090 TGCATTGCATTTTGGAGCTTAGGTTGGAGCACTTCA
1 TGCATTGCATTTCAGAGCATAGGTTGGAGCACTTCA
49222126 GTGTGTATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (37 bp):
TGCATTGCATTTCAGAGCATAGGTTGGAGCACTTCAA
Found at i:49223567 original size:39 final size:39
Alignment explanation
Indices: 49223522--49223603 Score: 146
Period size: 39 Copynumber: 2.1 Consensus size: 39
49223512 ATCATAAGCT
*
49223522 TTATGTACATACATGTACCATCTTGTAATAATTTCATAC
1 TTATGTACATACATATACCATCTTGTAATAATTTCATAC
*
49223561 TTATGTACATACCTATACCATCTTGTAATAATTTCATAC
1 TTATGTACATACATATACCATCTTGTAATAATTTCATAC
49223600 TTAT
1 TTAT
49223604 TCTCATAGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.33, C:0.18, G:0.06, T:0.43
Consensus pattern (39 bp):
TTATGTACATACATATACCATCTTGTAATAATTTCATAC
Found at i:49227013 original size:72 final size:72
Alignment explanation
Indices: 49226896--49227042 Score: 267
Period size: 72 Copynumber: 2.0 Consensus size: 72
49226886 TTACACACAC
* *
49226896 ATACCTGCACTTATTCATTACATAGTCAAATTCAATTACACCTAGTAATTTCTCGTTAAACACAT
1 ATACCTGAACTTATTCATTACATAGTCAAATTCAATTACACCTAGTAATTTCCCGTTAAACACAT
49226961 CGGAATA
66 CGGAATA
*
49226968 ATACCTGAACTTATTCATTACATAGTCAAATTCAATTACACCTAGTAATTTCCCGTTGAACACAT
1 ATACCTGAACTTATTCATTACATAGTCAAATTCAATTACACCTAGTAATTTCCCGTTAAACACAT
49227033 CGGAATA
66 CGGAATA
49227040 ATA
1 ATA
49227043 ACGGATATCG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 72 1.00
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.33
Consensus pattern (72 bp):
ATACCTGAACTTATTCATTACATAGTCAAATTCAATTACACCTAGTAATTTCCCGTTAAACACAT
CGGAATA
Found at i:49227186 original size:51 final size:51
Alignment explanation
Indices: 49227054--49227333 Score: 183
Period size: 51 Copynumber: 5.5 Consensus size: 51
49227044 CGGATATCGG
* * * * * *
49227054 GTGGCCTGCACATAGTACCACCCTTGT-AGTCAAAGCTACCT-TCTTCACAAA
1 GTGGCCTGCACATAGTACCACACATGTGA-TCAAAGCCATCTAT-TACACATA
* * * *
49227105 GTGGCCTTCACATAGTACCACACTTTTGATCAAAGCCATCTCTTACACATA
1 GTGGCCTGCACATAGTACCACACATGTGATCAAAGCCATCTATTACACATA
* * * * * *
49227156 GTGGCCTGCACTTAGTACCACACATGTGATCGAAGCTATCGAGTACGCATA
1 GTGGCCTGCACATAGTACCACACATGTGATCAAAGCCATCTATTACACATA
* * * * * * * * *
49227207 GTAGCCTGCACTTAGTACTATACATGCGACCTAA-CCACCTAGTACACATA
1 GTGGCCTGCACATAGTACCACACATGTGATCAAAGCCATCTATTACACATA
* * * * * * *
49227257 GTAGCCTGCACTTCGTACTACACACGTGACCTAAAACCAT-T-TTAAGCACATA
1 GTGGCCTGCACATAGTACCACACATGTGATC-AAAGCCATCTATT-A-CACATA
*
49227309 GTGGCCTGCACATAGTACTACACAT
1 GTGGCCTGCACATAGTACCACACAT
49227334 TTTTTCTCAT
Statistics
Matches: 185, Mismatches: 38, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
50 40 0.22
51 113 0.61
52 32 0.17
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (51 bp):
GTGGCCTGCACATAGTACCACACATGTGATCAAAGCCATCTATTACACATA
Found at i:49227267 original size:50 final size:51
Alignment explanation
Indices: 49227148--49227290 Score: 171
Period size: 50 Copynumber: 2.8 Consensus size: 51
49227138 AGCCATCTCT
* * * * * *
49227148 TACACATAGTGGCCTGCACTTAGTACCACACATGTGATCGAAGCTATCGAG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAGCCACCGAG
* * * *
49227199 TACGCATAGTAGCCTGCACTTAGTACTATACATGCGACCTAA-CCACCTAG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAGCCACCGAG
* *
49227249 TACACATAGTAGCCTGCACTTCGTACTACACACGTGACCTAA
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
49227291 AACCATTTTA
Statistics
Matches: 77, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
50 42 0.55
51 35 0.45
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (51 bp):
TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAGCCACCGAG
Found at i:49234669 original size:47 final size:47
Alignment explanation
Indices: 49234615--49234923 Score: 519
Period size: 47 Copynumber: 6.6 Consensus size: 47
49234605 TATTTGAATA
49234615 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
49234662 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
49234709 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
49234756 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
49234803 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
49234850 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
49234897 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
49234924 TCCCGAAGGG
Statistics
Matches: 250, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 250 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:49236496 original size:40 final size:39
Alignment explanation
Indices: 49236387--49236521 Score: 171
Period size: 40 Copynumber: 3.4 Consensus size: 39
49236377 ATTGATTATT
**
49236387 TATGGCACTTAGTGTGCGATACAACATAGCTTCGGCTATA
1 TATGGCACTTAGTGTGCGAT-TGACATAGCTTCGGCTATA
*
49236427 TATGGCACTTAGTGTGCTATTCGACATAGCTTCGGCTATA
1 TATGGCACTTAGTGTGCGATT-GACATAGCTTCGGCTATA
* * *
49236467 TATGGCACTTAGTGTGCGACTTGAGATAGCTTCAGCTATG
1 TATGGCACTTAGTGTGCGA-TTGACATAGCTTCGGCTATA
* *
49236507 CATAGCACTTAGTGT
1 TATGGCACTTAGTGT
49236522 AGAAGATATC
Statistics
Matches: 84, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
40 82 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (39 bp):
TATGGCACTTAGTGTGCGATTGACATAGCTTCGGCTATA
Found at i:49239834 original size:98 final size:96
Alignment explanation
Indices: 49239500--49239986 Score: 735
Period size: 98 Copynumber: 5.0 Consensus size: 96
49239490 TTGATGCATA
49239500 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
*
49239565 AAAGCCGACTGGCTGGCTAATGTGAAATATGTATG
66 AAAGCCGA----ATGGCTAATGTGAAATATGTATG
* * *
49239600 AGATATGTATATGTGGTAAAGCCGACTGGCT-ATGTGAAATATGCATAAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
49239664 AAAGCCGAATGGCTAATGTGAAATATGTATG
66 AAAGCCGAATGGCTAATGTGAAATATGTATG
*
49239695 AGATATGTATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
* *
49239760 AAAGCCGAATGGCTAATGCGAAATATATATATG
66 AAAGCCGAATGGCTAATGTG-AA-ATATGTATG
* * *
49239793 AGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATGAGATATGTATATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTG
49239858 GTAAAGCCGAATGGCTAATGTGAAATATGTATG
64 GTAAAGCCGAATGGCTAATGTGAAATATGTATG
** *
49239891 AGATATACATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATGTATATGT
*
49239955 GGTAAAGCCGAATGGCTAGTGTGAAATATGTA
63 GGTAAAGCCGAATGGCTAATGTGAAATATGTA
49239987 GGCGATGTGT
Statistics
Matches: 361, Mismatches: 20, Indels: 14
0.91 0.05 0.04
Matches are distributed among these distances:
95 51 0.14
96 50 0.14
97 3 0.01
98 140 0.39
99 43 0.12
100 74 0.20
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (96 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
AAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:49240002 original size:50 final size:48
Alignment explanation
Indices: 49239500--49239986 Score: 735
Period size: 48 Copynumber: 10.0 Consensus size: 48
49239490 TTGATGCATA
49239500 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
49239548 AGATATGTATATGTGGTAAAGCCGACTGGCTGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGA----ATGGCTAATGTGAAATATGTATG
* * *
49239600 AGATATGTATATGTGGTAAAGCCGACTGGCT-ATGTGAAATATGCATA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
49239647 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
49239695 AGATATGTATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
49239743 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
* * *
49239793 AGATATGTATATGTGGTAAAGCTGAATGGTTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
49239843 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
** *
49239891 AGATATACATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATG
*
49239941 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
49239987 GGCGATGTGT
Statistics
Matches: 405, Mismatches: 23, Indels: 22
0.90 0.05 0.05
Matches are distributed among these distances:
47 45 0.11
48 174 0.43
49 8 0.02
50 130 0.32
51 1 0.00
52 47 0.12
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:49240273 original size:37 final size:37
Alignment explanation
Indices: 49240128--49240272 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
49240118 GGAAATATAT
49240128 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
49240165 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
49240202 TCCGGGTAAGACCCGATGACTATGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * * *
49240239 TCCGGGTAAGACCTGATAACTTCGTATGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
49240273 TCATCTGAAC
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:49241783 original size:28 final size:28
Alignment explanation
Indices: 49241751--49241810 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
49241741 TTGTGTTGAA
*
49241751 TGATTTATAAGAATGAATGCTTTATGTT
1 TGATTTATAAGAATAAATGCTTTATGTT
* *
49241779 TGATTTATGAGAATAAATGTTTTATGTT
1 TGATTTATAAGAATAAATGCTTTATGTT
49241807 TGAT
1 TGAT
49241811 AAATGTATGC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.02, G:0.18, T:0.48
Consensus pattern (28 bp):
TGATTTATAAGAATAAATGCTTTATGTT
Found at i:49247947 original size:40 final size:40
Alignment explanation
Indices: 49247884--49247976 Score: 132
Period size: 40 Copynumber: 2.3 Consensus size: 40
49247874 CAGTTATTTG
* * * *
49247884 TGGCACTTAGTGTGCGATACAACATATCGTCGGCTATATA
1 TGGCACTTAGTGTACGATACAACAGAGCGTCAGCTATATA
* *
49247924 TGGCACTTAGTGTACGATTCAACAGAGCTTCAGCTATATA
1 TGGCACTTAGTGTACGATACAACAGAGCGTCAGCTATATA
49247964 TGGCACTTAGTGT
1 TGGCACTTAGTGT
49247977 GCAACTTGAG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (40 bp):
TGGCACTTAGTGTACGATACAACAGAGCGTCAGCTATATA
Found at i:49247993 original size:40 final size:39
Alignment explanation
Indices: 49247884--49248018 Score: 119
Period size: 40 Copynumber: 3.4 Consensus size: 39
49247874 CAGTTATTTG
* * * * *
49247884 TGGCACTTAGTGTGCGATACAACATATCGTCGGCTATATA
1 TGGCACTTAGTGTGCAATTCAACAGAGCTTC-GCTATATA
* *
49247924 TGGCACTTAGTGTACGATTCAACAGAGCTTCAGCTATATA
1 TGGCACTTAGTGTGCAATTCAACAGAGCTTC-GCTATATA
* * * *
49247964 TGGCACTTAGTGTGCAACTT-GAGATAGCTTCGACTATGTA
1 TGGCACTTAGTGTGCAA-TTCAACAGAGCTTCG-CTATATA
*
49248004 CGGCACTTAGTGTGC
1 TGGCACTTAGTGTGC
49248019 TAGATATCAA
Statistics
Matches: 80, Mismatches: 13, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
39 1 0.01
40 77 0.96
41 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (39 bp):
TGGCACTTAGTGTGCAATTCAACAGAGCTTCGCTATATA
Found at i:49251073 original size:45 final size:45
Alignment explanation
Indices: 49251009--49251094 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
49250999 TATGAAATAT
49251009 GAACTCATTAAGTTGTGGTCT-GAGTTCATGATATATGTGACGTCC
1 GAACTCATTAAGTTGTGGTCTAG-GTTCATGATATATGTGACGTCC
* *
49251054 GAACTCATTGAGTTGTGGTCTAGGTTCGTGATATATGTGAC
1 GAACTCATTAAGTTGTGGTCTAGGTTCATGATATATGTGAC
49251095 ACATGTTTTG
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
45 37 0.97
46 1 0.03
ACGTcount: A:0.23, C:0.14, G:0.27, T:0.36
Consensus pattern (45 bp):
GAACTCATTAAGTTGTGGTCTAGGTTCATGATATATGTGACGTCC
Found at i:49254727 original size:40 final size:40
Alignment explanation
Indices: 49254653--49254794 Score: 225
Period size: 40 Copynumber: 3.6 Consensus size: 40
49254643 AACCCAAGTA
* *
49254653 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
49254692 CCTGCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
49254732 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAGAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
49254772 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
49254795 CATTCGAATA
Statistics
Matches: 96, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
39 12 0.12
40 83 0.86
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:49262777 original size:40 final size:40
Alignment explanation
Indices: 49262704--49262964 Score: 411
Period size: 40 Copynumber: 6.6 Consensus size: 40
49262694 AACCCAAGTA
* *
49262704 CCTTCGGGATTTAG-CC-GATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
49262742 CCTTCGGGTCTTAGCCCAGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
49262782 CCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
49262822 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
49262862 CCTTCGGGACTTAGCCCGGATATAGTCATTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
49262902 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAGAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
49262942 CCTTCGGGACTTAGCCCAGATAT
1 CCTTCGGGACTTAGCCCGGATAT
49262965 TATTTGAATA
Statistics
Matches: 207, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
38 12 0.06
39 2 0.01
40 192 0.93
41 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:49265640 original size:12 final size:12
Alignment explanation
Indices: 49265623--49265654 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
49265613 CTCATTTATT
49265623 CACACTTTACCA
1 CACACTTTACCA
49265635 CACACTTTA-CA
1 CACACTTTACCA
49265646 -ACACTTTAC
1 CACACTTTAC
49265655 AAATAAGTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 8 0.42
11 2 0.11
12 9 0.47
ACGTcount: A:0.34, C:0.38, G:0.00, T:0.28
Consensus pattern (12 bp):
CACACTTTACCA
Found at i:49267178 original size:3 final size:3
Alignment explanation
Indices: 49267170--49267202 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
49267160 TGTCTTAGAG
49267170 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
49267203 AAGGAAGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:49268204 original size:19 final size:17
Alignment explanation
Indices: 49268161--49268199 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
49268151 TGAGATATAT
49268161 TAACATTTTTTATACAC
1 TAACATTTTTTATACAC
*
49268178 TAACATTTTTTATACCC
1 TAACATTTTTTATACAC
49268195 TAACA
1 TAACA
49268200 CATTTCCTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (17 bp):
TAACATTTTTTATACAC
Found at i:49269572 original size:40 final size:40
Alignment explanation
Indices: 49269528--49269608 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
49269518 TTAATTTTTG
49269528 GACTTTATTAAACTCATCTTAGTTAATTATTGATTTGCTA
1 GACTTTATTAAACTCATCTTAGTTAATTATTGATTTGCTA
**
49269568 GACTTTATTTTACTCATCTTAGTTAATTATTGATTTGCTA
1 GACTTTATTAAACTCATCTTAGTTAATTATTGATTTGCTA
49269608 G
1 G
49269609 TGTAACAGCC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.27, C:0.12, G:0.11, T:0.49
Consensus pattern (40 bp):
GACTTTATTAAACTCATCTTAGTTAATTATTGATTTGCTA
Found at i:49272224 original size:21 final size:22
Alignment explanation
Indices: 49272185--49272225 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
49272175 TTGGAATGGT
49272185 CACACGGGCGTGTTGCCCCTCC
1 CACACGGGCGTGTTGCCCCTCC
*
49272207 CACATGGGCGTG-TGCCCCT
1 CACACGGGCGTGTTGCCCCT
49272226 GTGTCAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.10, C:0.41, G:0.29, T:0.20
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTCC
Found at i:49276527 original size:40 final size:40
Alignment explanation
Indices: 49276425--49276527 Score: 161
Period size: 40 Copynumber: 2.6 Consensus size: 40
49276415 TAGTTTGATA
* * **
49276425 ATTGAGTTGCTAGACTTTATTAAACTCATCTTAGTTAATT
1 ATTGATTTGCTGGACTTTATTTTACTCATCTTAGTTAATT
49276465 ATTGATTTGCTGGACTTTATTTTACTCATCTTAGTTAATT
1 ATTGATTTGCTGGACTTTATTTTACTCATCTTAGTTAATT
*
49276505 ATTGATTTGCTGGACTTCATTTT
1 ATTGATTTGCTGGACTTTATTTT
49276528 CATTAAACTC
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.24, C:0.13, G:0.14, T:0.50
Consensus pattern (40 bp):
ATTGATTTGCTGGACTTTATTTTACTCATCTTAGTTAATT
Found at i:49276823 original size:24 final size:24
Alignment explanation
Indices: 49276787--49276859 Score: 73
Period size: 24 Copynumber: 3.1 Consensus size: 24
49276777 TTAATGCGGC
*
49276787 TATTACATTACTTAAAGAAGAGCAT
1 TATTACATCACTTAAAG-AGAGCAT
*
49276812 TATT-CATCACTTAAAG-GA-C-C
1 TATTACATCACTTAAAGAGAGCAT
*
49276832 TATTACATCATTTAAAGGAGAGCAT
1 TATTACATCACTTAAA-GAGAGCAT
49276857 TAT
1 TAT
49276860 ATATCCTTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
20 4 0.10
21 11 0.28
22 3 0.08
23 2 0.05
24 12 0.31
25 7 0.18
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (24 bp):
TATTACATCACTTAAAGAGAGCAT
Found at i:49276846 original size:21 final size:20
Alignment explanation
Indices: 49276812--49276850 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
49276802 AGAAGAGCAT
49276812 TATTCATCACTTAAAGGACC
1 TATTCATCACTTAAAGGACC
*
49276832 TATTACATCATTTAAAGGA
1 TATT-CATCACTTAAAGGA
49276851 GAGCATTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.33
Consensus pattern (20 bp):
TATTCATCACTTAAAGGACC
Found at i:49278316 original size:13 final size:13
Alignment explanation
Indices: 49278298--49278324 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
49278288 TTTAAATACC
49278298 AAATTAAATTTTG
1 AAATTAAATTTTG
49278311 AAATTAAATTTTG
1 AAATTAAATTTTG
49278324 A
1 A
49278325 TATCAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (13 bp):
AAATTAAATTTTG
Found at i:49279170 original size:25 final size:25
Alignment explanation
Indices: 49279142--49279189 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
49279132 TTATTCATTT
49279142 ATTAAAAATAGTAATTAAAAAATAA
1 ATTAAAAATAGTAATTAAAAAATAA
** **
49279167 ATTAATTATTTTAATTAAAAAAT
1 ATTAAAAATAGTAATTAAAAAAT
49279190 TATTTATTTC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (25 bp):
ATTAAAAATAGTAATTAAAAAATAA
Found at i:49279180 original size:21 final size:20
Alignment explanation
Indices: 49279156--49279203 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 20
49279146 AAAATAGTAA
49279156 TTAAAAAATAAATTAATTATT
1 TTAAAAAA-AAATTAATTATT
* *
49279177 TTAATTAAAAAATTATTTATT
1 TTAA-AAAAAAATTAATTATT
49279198 TCTAAA
1 T-TAAA
49279204 TTAAAAACTA
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (20 bp):
TTAAAAAAAAATTAATTATT
Found at i:49279311 original size:17 final size:17
Alignment explanation
Indices: 49279289--49279322 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
49279279 TTTTTAATAA
*
49279289 TAAAAATAAATAAATTT
1 TAAAAAAAAATAAATTT
*
49279306 TAAAAAAAAATTAATTT
1 TAAAAAAAAATAAATTT
49279323 AATTTTTAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TAAAAAAAAATAAATTT
Found at i:49279329 original size:23 final size:23
Alignment explanation
Indices: 49279278--49279353 Score: 66
Period size: 23 Copynumber: 3.2 Consensus size: 23
49279268 ATAGATATCT
49279278 ATTTTTAATAATAAAAATAAATA
1 ATTTTTAATAATAAAAATAAATA
* *
49279301 AATTTTAA-AA-AAAAATTAATTTA
1 ATTTTTAATAATAAAAA-TAA-ATA
*
49279324 ATTTTTAATCTAATATAAATAAATTA
1 ATTTTTAA--TAATAAAAATAAA-TA
49279350 ATTT
1 ATTT
49279354 ATCTATTTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
21 5 0.12
22 5 0.12
23 16 0.39
26 11 0.27
27 4 0.10
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.43
Consensus pattern (23 bp):
ATTTTTAATAATAAAAATAAATA
Found at i:49281094 original size:20 final size:20
Alignment explanation
Indices: 49281069--49281108 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
49281059 TGAATGAAAA
49281069 TTGAAAGTGATTAAATTAAG
1 TTGAAAGTGATTAAATTAAG
49281089 TTGAAAGTGATTAAATTAAG
1 TTGAAAGTGATTAAATTAAG
49281109 GTTTAATTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.20, T:0.35
Consensus pattern (20 bp):
TTGAAAGTGATTAAATTAAG
Found at i:49287721 original size:15 final size:15
Alignment explanation
Indices: 49287698--49287733 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
49287688 CTAGGACTGA
49287698 TGGGCCGATTAGAGC
1 TGGGCCGATTAGAGC
*
49287713 TGGGTCGATTAGAGC
1 TGGGCCGATTAGAGC
49287728 TGGGCC
1 TGGGCC
49287734 CCTTGTTGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.17, C:0.19, G:0.42, T:0.22
Consensus pattern (15 bp):
TGGGCCGATTAGAGC
Found at i:49298294 original size:18 final size:18
Alignment explanation
Indices: 49298271--49298309 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
49298261 TACGAAAGGG
49298271 AGTTTGTAAGGCTAAGTC
1 AGTTTGTAAGGCTAAGTC
49298289 AGTTTGTAAGGCTAAGTC
1 AGTTTGTAAGGCTAAGTC
49298307 AGT
1 AGT
49298310 ATGCGACTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.28, C:0.10, G:0.28, T:0.33
Consensus pattern (18 bp):
AGTTTGTAAGGCTAAGTC
Found at i:49300557 original size:47 final size:47
Alignment explanation
Indices: 49300488--49300697 Score: 273
Period size: 47 Copynumber: 4.4 Consensus size: 47
49300478 ACAATTGCCC
* * * *
49300488 TTCGGACTTATCACATTTATACACT-TCCACATCCATCACATTGGCCA
1 TTCGGCCTTATCACATATATACA-TGTTCACATTCATCACATTGGCCA
*
49300535 TTCGGCCTTATCACATATATACACT-TTCACATTCAACACATTGGCCA
1 TTCGGCCTTATCACATATATACA-TGTTCACATTCATCACATTGGCCA
* *
49300582 TTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCA
1 TTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCA
* *
49300629 TTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCA
1 TTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCA
*
49300676 TTCAG-CTTATCACGCATATATA
1 TTCGGCCTTATCA--CATATATA
49300698 TACTGTAACA
Statistics
Matches: 145, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
46 8 0.06
47 131 0.90
48 6 0.04
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
TTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCA
Found at i:49302068 original size:27 final size:27
Alignment explanation
Indices: 49302037--49302105 Score: 93
Period size: 27 Copynumber: 2.6 Consensus size: 27
49302027 TATATTGGTC
* * *
49302037 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
* *
49302064 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
49302091 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
49302106 GTACAATTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:49310023 original size:27 final size:27
Alignment explanation
Indices: 49309993--49310088 Score: 138
Period size: 27 Copynumber: 3.5 Consensus size: 27
49309983 ATATTGGGTC
* *
49309993 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
49310020 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
49310047 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
49310075 CGCACACTTAGTGC
1 CGCACACTTAGTGC
49310089 CGCATGGTCA
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
27 44 0.72
28 17 0.28
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:49310105 original size:55 final size:54
Alignment explanation
Indices: 49309993--49310107 Score: 140
Period size: 55 Copynumber: 2.1 Consensus size: 54
49309983 ATATTGGGTC
* * *
49309993 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAATCAAAT
* * * ** *
49310047 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTCAGTGCTACATAATC-AACTCGCACACTTAGTGCCACATAATCAAAT
49310102 CGCACA
1 CGCACA
49310108 NNNNNNNNNN
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
54 20 0.39
55 31 0.61
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.24
Consensus pattern (54 bp):
CGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAATCAAAT
Found at i:49331565 original size:13 final size:13
Alignment explanation
Indices: 49331547--49331571 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49331537 AACAAAGTAA
49331547 GACACGGCCGAGC
1 GACACGGCCGAGC
49331560 GACACGGCCGAG
1 GACACGGCCGAG
49331572 TGCCTAAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.40, T:0.00
Consensus pattern (13 bp):
GACACGGCCGAGC
Found at i:49333510 original size:11 final size:11
Alignment explanation
Indices: 49333496--49333520 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
49333486 TTCATTTTTC
49333496 TTTAATATTAG
1 TTTAATATTAG
49333507 TTTAATATTAG
1 TTTAATATTAG
49333518 TTT
1 TTT
49333521 TTATAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (11 bp):
TTTAATATTAG
Found at i:49344386 original size:15 final size:15
Alignment explanation
Indices: 49344362--49344392 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
49344352 AAAAATGAAA
49344362 AGAAAACCAAAATAC
1 AGAAAACCAAAATAC
*
49344377 AGAAATCCAAAATAC
1 AGAAAACCAAAATAC
49344392 A
1 A
49344393 ATGTCGTATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.65, C:0.19, G:0.06, T:0.10
Consensus pattern (15 bp):
AGAAAACCAAAATAC
Found at i:49347572 original size:39 final size:39
Alignment explanation
Indices: 49347488--49347760 Score: 354
Period size: 39 Copynumber: 7.0 Consensus size: 39
49347478 CAAATCCAAT
* * *
49347488 CACCACCAC-AAAGCATGCGGGACTTTAAGCCCGGATATAA
1 CACCAGCACGAAAGCCTTCGGGAC-TT-AGCCCGGATATAA
* * *
49347528 TACCAGCAC-AAAGCCTGCGGGACTTTAGCCCAGATATAA
1 CACCAGCACGAAAGCCTTCGGGAC-TTAGCCCGGATATAA
* *
49347567 CACCAGCAAGAATGCCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAAAGCCTTCGGGACTTAGCCCGGATATAA
* * * * *
49347606 CACCAGCACGAAAACCTGCAGGACTTAGCCTGAATATAA
1 CACCAGCACGAAAGCCTTCGGGACTTAGCCCGGATATAA
*
49347645 CACCAGCACGAATGCCTTC-GGACTTAGCCCGGATATAA
1 CACCAGCACGAAAGCCTTCGGGACTTAGCCCGGATATAA
*
49347683 CACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAAAGCCTTCGGGACTTAGCCCGGATATAA
*
49347722 CACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAAAGCCTTCGGGACTTAGCCCGGATATAA
49347761 TTCTCGATTA
Statistics
Matches: 210, Mismatches: 21, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
38 36 0.17
39 139 0.66
40 35 0.17
ACGTcount: A:0.32, C:0.30, G:0.21, T:0.17
Consensus pattern (39 bp):
CACCAGCACGAAAGCCTTCGGGACTTAGCCCGGATATAA
Found at i:49347727 original size:116 final size:117
Alignment explanation
Indices: 49347515--49347760 Score: 361
Period size: 116 Copynumber: 2.1 Consensus size: 117
49347505 CGGGACTTTA
* *
49347515 AGCCCGGATATAATACCAGCACAAAGCCTGCGGGACTTTAGCCCAGATATAACACCAGCAAGAAT
1 AGCCCGAATATAACACCAGCACAAAGCCTGCGGGACTTTAGCCCAGATATAACACCAGCAAGAAT
49347580 GCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAAAACCTGCAGGACTT
66 GCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAAAACCTGCAGGACTT
* * * * *
49347632 AGCCTGAATATAACACCAGCACGAATGCCTTC-GGAC-TTAGCCCGGATATAACACCAGCACGAA
1 AGCCCGAATATAACACCAGCAC-AAAGCCTGCGGGACTTTAGCCCAGATATAACACCAGCAAGAA
** * *
49347695 TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
65 TGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAAAACCTGCAGGACTT
*
49347748 AGCCCGGATATAA
1 AGCCCGAATATAA
49347761 TTCTCGATTA
Statistics
Matches: 115, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
116 85 0.74
117 23 0.20
118 7 0.06
ACGTcount: A:0.32, C:0.29, G:0.22, T:0.17
Consensus pattern (117 bp):
AGCCCGAATATAACACCAGCACAAAGCCTGCGGGACTTTAGCCCAGATATAACACCAGCAAGAAT
GCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAAAACCTGCAGGACTT
Found at i:49351703 original size:25 final size:24
Alignment explanation
Indices: 49351675--49351744 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 24
49351665 CTCTTTTAAT
*
49351675 AACTGGGGCAAAGCCGTTTTTGATA
1 AACTGGGGCAAAGCC-TTTTCGATA
49351700 AACTGGGGCAAAGCTCTTTTCGATA
1 AACTGGGGCAAAGC-CTTTTCGATA
*
49351725 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAG-CCTTTT
49351745 AGCATTTCCT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
25 39 0.95
26 2 0.05
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (24 bp):
AACTGGGGCAAAGCCTTTTCGATA
Found at i:49351976 original size:27 final size:27
Alignment explanation
Indices: 49351946--49352242 Score: 357
Period size: 27 Copynumber: 11.0 Consensus size: 27
49351936 AGGGCAAAAT
* *
49351946 GGTAATTTTA-CCTCACAAGGGTATCTC
1 GGTAATTCTACCCT-ACAAGGGTATTTC
*
49351973 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
49352000 GATATTTTTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
49352027 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
49352054 GATATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
49352081 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
49352108 AGTAATTCTACCCTACAAGAGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
49352135 GGTAATTCTACCCTAC-AGGGTTATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
* *
49352162 AGTAATTCTACCCTA-TAGAGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
* * *
49352189 GATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
49352216 GGTAATTCTACCCTACAGGGGAATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
49352243 AATATTTTAC
Statistics
Matches: 231, Mismatches: 34, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.01
27 222 0.96
28 6 0.03
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:49352317 original size:27 final size:27
Alignment explanation
Indices: 49352262--49352438 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
49352252 CAAATCGAGA
* * * * *
49352262 GTATTTCGATAATTTCACAAATTAGGG
1 GTATTTTGGTAATTTTACAAACTAAGG
* *
49352289 GTATTTTGGTAATTTTACAAGCTGAGG
1 GTATTTTGGTAATTTTACAAACTAAGG
* * *
49352316 GTATTTGGGTAATTTT-TAAACTAGGG
1 GTATTTTGGTAATTTTACAAACTAAGG
* *
49352342 GTATTTTAGTAATTTTACAAACCAAGG
1 GTATTTTGGTAATTTTACAAACTAAGG
** *
49352369 GTATTTTGGTAATTTTACTGA-TCGAGG
1 GTATTTTGGTAATTTTACAAACT-AAGG
**
49352396 GTATTTTGGTAATTTTGTAAACTAAGG
1 GTATTTTGGTAATTTTACAAACTAAGG
* *
49352423 GCATTTTAGTAATTTT
1 GTATTTTGGTAATTTT
49352439 GTAAATTGAG
Statistics
Matches: 118, Mismatches: 29, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
26 20 0.17
27 97 0.82
28 1 0.01
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.42
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAACTAAGG
Found at i:49352346 original size:80 final size:81
Alignment explanation
Indices: 49352262--49352437 Score: 214
Period size: 80 Copynumber: 2.2 Consensus size: 81
49352252 CAAATCGAGA
** * *
49352262 GTATTTCGA-TAATTTCACAAATTAGGGGTATTTTGGTAATTTTACA-AGCTGAGGGTATTTGGG
1 GTATTT-GAGTAATTTCACAAACCAAGGGTATTTTGGTAATTTTACAGATC-GAGGGTATTTGGG
*
49352325 TAATTTT-TAAACTAGGG
64 TAATTTTGTAAACTAAGG
* * * *
49352342 GTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTA
1 GTATTTGAGTAATTTCACAAACCAAGGGTATTTTGGTAATTTTACAGATCGAGGGTATTTGGGTA
49352407 ATTTTGTAAACTAAGG
66 ATTTTGTAAACTAAGG
* *
49352423 GCATTTTAGTAATTT
1 GTATTTGAGTAATTT
49352438 TGTAAATTGA
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
79 1 0.01
80 57 0.69
81 25 0.30
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.42
Consensus pattern (81 bp):
GTATTTGAGTAATTTCACAAACCAAGGGTATTTTGGTAATTTTACAGATCGAGGGTATTTGGGTA
ATTTTGTAAACTAAGG
Found at i:49352423 original size:54 final size:53
Alignment explanation
Indices: 49352285--49352443 Score: 176
Period size: 53 Copynumber: 3.0 Consensus size: 53
49352275 TTCACAAATT
* * * *
49352285 AGGGGTATTTTGGTAATTTTACAAGCTGAGGGTATTTGGGTAATTTTTAAACT
1 AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTTAAACG
* * * *
49352338 AGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACTGATCG
1 AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTT--TAAACG
** * *
49352393 A-GGGTATTTTGGTAATTTTGTAAACTAAGGGCATTTTAGTAATTTTGTAAA
1 AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTT-TAAA
49352444 TTGAGGGTAA
Statistics
Matches: 87, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
53 44 0.51
54 39 0.45
55 4 0.05
ACGTcount: A:0.29, C:0.06, G:0.23, T:0.42
Consensus pattern (53 bp):
AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTTAAACG
Found at i:49352502 original size:27 final size:27
Alignment explanation
Indices: 49352431--49352586 Score: 197
Period size: 27 Copynumber: 5.8 Consensus size: 27
49352421 GGGCATTTTA
* * *
49352431 GTAATTTTGTAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
49352458 GT-ATTCTATAAATTGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
49352484 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
49352511 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
49352538 GTAATTCTGTAAATCGAGAGTAACATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
49352565 GTAATTCTATAAATCAAGGGTA
1 GTAATTCTATAAATCGAGGGTA
49352587 CTTTGGTAAT
Statistics
Matches: 112, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 23 0.21
27 89 0.79
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:49352542 original size:54 final size:54
Alignment explanation
Indices: 49352430--49352586 Score: 235
Period size: 54 Copynumber: 2.9 Consensus size: 54
49352420 AGGGCATTTT
* * * *
49352430 AGTAATTTTGTAAATTGAGGGTAAAACGGT-ATTCTATAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAC
49352483 AGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAC
* * * *
49352537 GGTAATTCTGTAAATCGAGAGTAACATGGTAATTCTATAAATCAAGGGTA
1 AGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
49352587 CTTTGGTAAT
Statistics
Matches: 95, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
53 27 0.28
54 68 0.72
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.30
Consensus pattern (54 bp):
AGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAC
Found at i:49352585 original size:81 final size:80
Alignment explanation
Indices: 49352431--49352611 Score: 227
Period size: 81 Copynumber: 2.2 Consensus size: 80
49352421 GGGCATTTTA
* * * *
49352431 GTAATTTTGTAAATTGAGGGTAAAACGGTATTCTATAAATTGAGGGTAAAACAGTAATTCTGTAA
1 GTAATTTTATAAATTGAGGGTAAAACGGTATTCTATAAATCGAGAGTAAAACAGTAATTCTATAA
*
49352496 ATCGAGGGTAAAATG
66 ATCAAGGGTAAAATG
* * * * **
49352511 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGAGTAACATGGTAATTCTATA
1 GTAATTTTATAAATTGAGGGTAAAACGGT-ATTCTATAAATCGAGAGTAAAACAGTAATTCTATA
***
49352576 AATCAAGGGTACTTTG
65 AATCAAGGGTAAAATG
49352592 GTAATTTTATAAATTGAGGG
1 GTAATTTTATAAATTGAGGG
49352612 CATTTTAGTA
Statistics
Matches: 84, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
80 26 0.31
81 58 0.69
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.32
Consensus pattern (80 bp):
GTAATTTTATAAATTGAGGGTAAAACGGTATTCTATAAATCGAGAGTAAAACAGTAATTCTATAA
ATCAAGGGTAAAATG
Found at i:49352593 original size:27 final size:27
Alignment explanation
Indices: 49352431--49352611 Score: 193
Period size: 27 Copynumber: 6.7 Consensus size: 27
49352421 GGGCATTTTA
* * * *
49352431 GTAATTTTGTAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* **
49352458 GT-ATTCTATAAATTGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAATG
*
49352484 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
49352511 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
49352538 GTAATTCTGTAAATCGAGAGTAACATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* ***
49352565 GTAATTCTATAAATCAAGGGTACTTTG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
49352592 GTAATTTTATAAATTGAGGG
1 GTAATTCTATAAATCGAGGG
49352612 CATTTTAGTA
Statistics
Matches: 131, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 23 0.18
27 108 0.82
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.32
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:49352622 original size:27 final size:27
Alignment explanation
Indices: 49352565--49352625 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
49352555 GAGTAACATG
* * *
49352565 GTAATTCTATAAATCAAGGGTACTTTG
1 GTAATTTTATAAATCAAGGGCACTTTA
** *
49352592 GTAATTTTATAAATTGAGGGCATTTTA
1 GTAATTTTATAAATCAAGGGCACTTTA
49352619 GTAATTT
1 GTAATTT
49352626 GGTAAACTAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.07, G:0.18, T:0.43
Consensus pattern (27 bp):
GTAATTTTATAAATCAAGGGCACTTTA
Found at i:49354751 original size:31 final size:31
Alignment explanation
Indices: 49354708--49354786 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
49354698 TTGAACGGTT
*
49354708 ACTGGGCTGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
49354739 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
49354770 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
49354787 ATTGTAAACG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:49355032 original size:24 final size:25
Alignment explanation
Indices: 49355000--49355046 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
49354990 GCCTAGCGTC
49355000 TTTTAAT-AACTGGGGCAAAGCCTT
1 TTTTAATAAACTGGGGCAAAGCCTT
*
49355024 TTTTGATAAACTGGGGCAAAGCC
1 TTTTAATAAACTGGGGCAAAGCC
49355047 CATTTCGGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCTT
Found at i:49355058 original size:25 final size:25
Alignment explanation
Indices: 49355007--49355072 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
49354997 GTCTTTTAAT
** *
49355007 AACTGGGGCAAAGCCTTTTTTGATA
1 AACTGGGGCAAAGCCCATTTCGATA
*
49355032 AACTGGGGCAAAGCCCATTTCGGTA
1 AACTGGGGCAAAGCCCATTTCGATA
* * *
49355057 AATTGAGGCATAGCCC
1 AACTGGGGCAAAGCCC
49355073 TTTTAGCACT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCATTTCGATA
Found at i:49355338 original size:27 final size:27
Alignment explanation
Indices: 49355294--49355522 Score: 291
Period size: 27 Copynumber: 8.5 Consensus size: 27
49355284 TTTTACCCAA
* *
49355294 GGGTATCTCGGTAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
* * *
49355321 GGGTATCTCGATATTTCTACCCTACAA
1 GGGTATTTCGATAATTCTACCCTACAG
* *
49355348 GGGTAGTTCGATAATTCTACCCTATAG
1 GGGTATTTCGATAATTCTACCCTACAG
* *
49355375 GGGTATTTCGGTAATTCTACCCTATAG
1 GGGTATTTCGATAATTCTACCCTACAG
* * *
49355402 GGGTATTTCGGTAATTCTACCTTATAG
1 GGGTATTTCGATAATTCTACCCTACAG
* *
49355429 GGTTATTTC-AGTAATTCTATCCTACAG
1 GGGTATTTCGA-TAATTCTACCCTACAG
*
49355456 GGGTATTTCGGTAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
49355483 GGGTATTTC-AGTAATTCTACCCTACAG
1 GGGTATTTCGA-TAATTCTACCCTACAG
49355510 GGGTATTTCGATA
1 GGGTATTTCGATA
49355523 TTTTACAAAT
Statistics
Matches: 178, Mismatches: 20, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
27 177 0.99
28 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (27 bp):
GGGTATTTCGATAATTCTACCCTACAG
Found at i:49355568 original size:27 final size:27
Alignment explanation
Indices: 49355507--49355702 Score: 184
Period size: 27 Copynumber: 7.3 Consensus size: 27
49355497 TTCTACCCTA
* * *
49355507 CAGGGGTATTTCGAT-ATTTTACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAAC
* * * * *
49355533 C-GAGAGTATTTCGTTAATTTCACAAAT
1 CAG-GGGTATTTTGGTAATTTTACAAAC
*
49355560 CAGGGGTATTTTGGTAATTTTACAAGC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
49355587 CAGGGGTATTTTGGT-ATTTTACACAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
49355613 CAGGGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* **
49355640 TAGGGGTATTTTGGTAATTTTACTGA-
1 CAGGGGTATTTTGGTAATTTTACAAAC
* **
49355666 CTGAGGGTATTTTGGTAATTTTGTAAAC
1 CAG-GGGTATTTTGGTAATTTTACAAAC
*
49355694 CAAGGGTAT
1 CAGGGGTAT
49355703 GTCAGTAATT
Statistics
Matches: 139, Mismatches: 25, Indels: 11
0.79 0.14 0.06
Matches are distributed among these distances:
25 1 0.01
26 35 0.25
27 101 0.73
28 2 0.01
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.39
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:49355577 original size:80 final size:79
Alignment explanation
Indices: 49355479--49355658 Score: 184
Period size: 80 Copynumber: 2.3 Consensus size: 79
49355469 ATTCTACCCT
** *** *
49355479 ACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTTACAAATC-GAGAGTA-T
1 ACAGGGGTATTTTGGTAATTCTACAAGACAGGGGTATTTCGATATTTTACAAACCAG-GAGTATT
*
49355542 TTCGTTAATTTCACAA
65 TTAG-TAATTTCACAA
* * * * * *
49355558 ATCAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTATTTTACACACCAGGGGTATT
1 A-CAGGGGTATTTTGGTAATTCTACAAGACAGGGGTATTTCGATATTTTACAAACCAGGAGTATT
*
49355623 TTAGTAATTTTACAA
65 TTAGTAATTTCACAA
49355638 ACTAGGGGTATTTTGGTAATT
1 AC-AGGGGTATTTTGGTAATT
49355659 TTACTGACTG
Statistics
Matches: 83, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
79 2 0.02
80 76 0.92
81 5 0.06
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.38
Consensus pattern (79 bp):
ACAGGGGTATTTTGGTAATTCTACAAGACAGGGGTATTTCGATATTTTACAAACCAGGAGTATTT
TAGTAATTTCACAA
Found at i:49355617 original size:53 final size:53
Alignment explanation
Indices: 49355452--49355702 Score: 195
Period size: 53 Copynumber: 4.7 Consensus size: 53
49355442 ATTCTATCCT
* * ** ** * *
49355452 ACAGGGGTATTTCGGTAATTCTACCCTA-CAGGGGTATTTCAGTAATTCTACCC
1 ACAGGGGTATTTTGGTAATTTTA-CAAACCAGGGGTATTTTGGTAATTTTACAC
* * * * * * * *
49355505 TACAGGGGTATTTCGAT-ATTTTACAAATC-GAGAGTATTTCGTTAATTTCACAA
1 -ACAGGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTGGTAATTTTACAC
*
49355558 ATCAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGT-ATTTTACAC
1 A-CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAC
* * **
49355611 ACCAGGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACTG
1 A-CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAC
* ** *
49355665 ACTGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTAT
1 ACAG-GGGTATTTTGGTAATTTTACAAACCAGGGGTAT
49355703 GTCAGTAATT
Statistics
Matches: 158, Mismatches: 32, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
52 4 0.03
53 83 0.53
54 70 0.44
55 1 0.01
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.37
Consensus pattern (53 bp):
ACAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAC
Found at i:49355763 original size:81 final size:80
Alignment explanation
Indices: 49355678--49355863 Score: 210
Period size: 81 Copynumber: 2.3 Consensus size: 80
49355668 GAGGGTATTT
* * * ** * * * * * *
49355678 TGGTAATTTTGTAAACCAAGGGTATGTCAGTAATTTTGTAAATCGGGGGTAAAATGATAATTTTG
1 TGGTAATTCTGTAAATCGAGGGTAAAT-AGTAATTCTATAAATCGAGGGTAAAACGATAATTCTA
49355743 TAAATCGAGGGTAAAA
65 TAAATCGAGGGTAAAA
** * *
49355759 TGGTAATTCTACAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
1 TGGTAATTCTGTAAATCGAGGGT-AAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTA
*
49355824 TAAATTGAGGGTAAAA
65 TAAATCGAGGGTAAAA
49355840 TGGTAATTCTGTAAATCGAGGGTA
1 TGGTAATTCTGTAAATCGAGGGTA
49355864 CTTTGGTAAT
Statistics
Matches: 86, Mismatches: 18, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
80 1 0.01
81 83 0.97
82 2 0.02
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.31
Consensus pattern (80 bp):
TGGTAATTCTGTAAATCGAGGGTAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTAT
AAATCGAGGGTAAAA
Found at i:49355871 original size:81 final size:81
Alignment explanation
Indices: 49355707--49355888 Score: 229
Period size: 81 Copynumber: 2.2 Consensus size: 81
49355697 GGGTATGTCA
* * * * *
49355707 GTAATTTTGTAAATCGGGGGTAAAATGATAATTTTGTAAATCGAGGGTAAAATGGTAATTCTACA
1 GTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
49355772 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* * * **
49355788 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTGTA
1 GTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
***
49355853 AATCGAGGGTACTTTG
66 AATCGAGGGTAAAATG
* *
49355869 GTAATTTTACAAATTGAGGG
1 GTAATTTTATAAATCGAGGG
49355889 CATTTCAGTA
Statistics
Matches: 85, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 85 1.00
ACGTcount: A:0.37, C:0.07, G:0.24, T:0.32
Consensus pattern (81 bp):
GTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
AATCGAGGGTAAAATG
Found at i:49355872 original size:54 final size:54
Alignment explanation
Indices: 49355724--49355888 Score: 240
Period size: 54 Copynumber: 3.1 Consensus size: 54
49355714 TGTAAATCGG
* * *
49355724 GGGTAAAATGATAATTTTGTAAATCGAGGGTAAAATGGTAATTCTACAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACAAATTGA
* * *
49355778 GGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATTGA
1 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACAAATTGA
*** *
49355832 GGGTAAAATGGTAATTCTGTAAATCGAGGGTACTTTGGTAATTTTACAAATTGA
1 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACAAATTGA
49355886 GGG
1 GGG
49355889 CATTTCAGTA
Statistics
Matches: 98, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 98 1.00
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (54 bp):
GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACAAATTGA
Found at i:49355874 original size:27 final size:27
Alignment explanation
Indices: 49355707--49355863 Score: 224
Period size: 27 Copynumber: 5.8 Consensus size: 27
49355697 GGGTATGTCA
* *
49355707 GTAATTTTGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
49355734 ATAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
**
49355761 GTAATTCTACAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
49355788 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
49355815 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
49355842 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
49355864 CTTTGGTAAT
Statistics
Matches: 118, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 118 1.00
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:49355882 original size:27 final size:27
Alignment explanation
Indices: 49355522--49355888 Score: 165
Period size: 27 Copynumber: 13.6 Consensus size: 27
49355512 GTATTTCGAT
* *
49355522 ATTTTACAAATCGAGAGT-ATTTCGTTA
1 ATTTTACAAATCGAGGGTAATTT-GGTA
* *
49355549 ATTTCACAAATC-AGGGGTATTTTGGTA
1 ATTTTACAAATCGA-GGGTAATTTGGTA
* * *
49355576 ATTTTAC-AAGCCAGGGGTATTTTGGT-
1 ATTTTACAAATCGA-GGGTAATTTGGTA
* * * *
49355602 ATTTTACACA-CCAGGGGTATTTTAGTA
1 ATTTTACAAATCGA-GGGTAATTTGGTA
* *
49355629 ATTTTACAAA-CTAGGGGTATTTTGGTA
1 ATTTTACAAATCGA-GGGTAATTTGGTA
** *
49355656 ATTTTACTGA-CTGAGGGTATTTTGGTA
1 ATTTTACAAATC-GAGGGTAATTTGGTA
** * * **
49355683 ATTTTGTAAACCAAGGGT-ATGTCAGTA
1 ATTTTACAAATCGAGGGTAAT-TTGGTA
** * ** *
49355710 ATTTTGTAAATCGGGGGTAAAATGATA
1 ATTTTACAAATCGAGGGTAATTTGGTA
** **
49355737 ATTTTGTAAATCGAGGGTAAAATGGTA
1 ATTTTACAAATCGAGGGTAATTTGGTA
* **
49355764 ATTCTACAAATCGAGGGTAAAATGGTA
1 ATTTTACAAATCGAGGGTAATTTGGTA
* * ***
49355791 ATTCTATAAATCGAGGGTAAAACGGTA
1 ATTTTACAAATCGAGGGTAATTTGGTA
* * * **
49355818 ATTCTATAAATTGAGGGTAAAATGGTA
1 ATTTTACAAATCGAGGGTAATTTGGTA
* ** *
49355845 ATTCTGTAAATCGAGGGTACTTTGGTA
1 ATTTTACAAATCGAGGGTAATTTGGTA
*
49355872 ATTTTACAAATTGAGGG
1 ATTTTACAAATCGAGGG
49355889 CATTTCAGTA
Statistics
Matches: 283, Mismatches: 48, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
26 27 0.10
27 250 0.88
28 6 0.02
ACGTcount: A:0.33, C:0.09, G:0.23, T:0.35
Consensus pattern (27 bp):
ATTTTACAAATCGAGGGTAATTTGGTA
Found at i:49357743 original size:26 final size:26
Alignment explanation
Indices: 49357633--49357740 Score: 144
Period size: 26 Copynumber: 4.2 Consensus size: 26
49357623 CTTATCTGGG
* * * *
49357633 TAATCAAAAAGTTCACAAAGAACTTT
1 TAATCAGAAAGCTCACGAAGAGCTTT
*
49357659 TAATCAGAAAGCTCATGAAGAGCTTT
1 TAATCAGAAAGCTCACGAAGAGCTTT
*
49357685 TCATCAGAAAGCTCACGAAGAGCTTT
1 TAATCAGAAAGCTCACGAAGAGCTTT
* *
49357711 TCATTAGAAAGCTCACGAAGAGCTTT
1 TAATCAGAAAGCTCACGAAGAGCTTT
49357737 TAAT
1 TAAT
49357741 TAGGAGCTCC
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.27
Consensus pattern (26 bp):
TAATCAGAAAGCTCACGAAGAGCTTT
Found at i:49357873 original size:65 final size:65
Alignment explanation
Indices: 49357789--49357940 Score: 180
Period size: 65 Copynumber: 2.3 Consensus size: 65
49357779 GAGCCATATC
* * ** * * *
49357789 AGGATGCTCACAAAAAGCTGTGTTTGAGTTTGCAACATATGCAGGATCACAACTGATTATAAAAT
1 AGGATGCTCACAAAGAGCTGCGTTTGAGTCCGCAACATAAGCAGGATCACAACCGATCATAAAAT
* * * * *
49357854 AGGATGCTCACACAGAGCTGCGTTTGTGTCCGCAATATAAGCAGGATCATAACCGATCATATAAT
1 AGGATGCTCACAAAGAGCTGCGTTTGAGTCCGCAACATAAGCAGGATCACAACCGATCATAAAAT
49357919 AGGACT-CTCACAAAGAGCTGCG
1 AGGA-TGCTCACAAAGAGCTGCG
49357941 ATAGTCCTCA
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
65 72 0.99
66 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (65 bp):
AGGATGCTCACAAAGAGCTGCGTTTGAGTCCGCAACATAAGCAGGATCACAACCGATCATAAAAT
Found at i:49363285 original size:47 final size:47
Alignment explanation
Indices: 49363233--49363685 Score: 692
Period size: 47 Copynumber: 9.6 Consensus size: 47
49363223 GATAATTGTG
* *
49363233 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
49363280 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
49363327 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
49363376 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
49363425 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGTCGATGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49363472 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49363519 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
49363566 ATGTGAAACTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
49363613 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATGA
*
49363660 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
49363686 TCCCGAAGGG
Statistics
Matches: 375, Mismatches: 27, Indels: 7
0.92 0.07 0.02
Matches are distributed among these distances:
46 2 0.01
47 277 0.74
48 2 0.01
49 94 0.25
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:49366007 original size:40 final size:40
Alignment explanation
Indices: 49365943--49366204 Score: 400
Period size: 40 Copynumber: 6.6 Consensus size: 40
49365933 AGGTCTCGAC
*
49365943 GATG-ATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
49365982 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
49366022 GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
49366062 GATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
49366102 GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
49366142 GATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
49366182 GTTGTATCCGGACTAAGTTCCGA
1 GATGTATCCGGGCTAAGTCCCGA
49366205 CCGGACTAAG
Statistics
Matches: 200, Mismatches: 22, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
39 4 0.02
40 196 0.98
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:49366087 original size:80 final size:80
Alignment explanation
Indices: 49365954--49366204 Score: 457
Period size: 80 Copynumber: 3.1 Consensus size: 80
49365944 ATGATCCAGG
* * * *
49365954 CTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 CTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
49366019 AGTGATGTATCCGGA
66 AGTGATGTATCCGGA
49366034 CTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 CTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
49366099 AGTGATGTATCCGGA
66 AGTGATGTATCCGGA
49366114 CTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 CTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
*
49366179 AGTGTTGTATCCGGA
66 AGTGATGTATCCGGA
49366194 CTAAGTTCCGA
1 CTAAGTTCCGA
49366205 CCGGACTAAG
Statistics
Matches: 166, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
80 166 1.00
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
CTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
AGTGATGTATCCGGA
Found at i:49366210 original size:16 final size:16
Alignment explanation
Indices: 49366189--49366220 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
49366179 AGTGTTGTAT
49366189 CCGGACTAAGTTCCGA
1 CCGGACTAAGTTCCGA
49366205 CCGGACTAAGTTCCGA
1 CCGGACTAAGTTCCGA
49366221 AGAGCATTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (16 bp):
CCGGACTAAGTTCCGA
Found at i:49366265 original size:40 final size:40
Alignment explanation
Indices: 49366205--49366306 Score: 150
Period size: 40 Copynumber: 2.5 Consensus size: 40
49366195 TAAGTTCCGA
*
49366205 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
* * *
49366245 CCGTGCTAAGTTCCGAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
* *
49366285 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTTCCGAAGAGCA
49366307 ATCATGCTGG
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
Found at i:49366273 original size:96 final size:96
Alignment explanation
Indices: 49366109--49366288 Score: 315
Period size: 96 Copynumber: 1.9 Consensus size: 96
49366099 AGTGATGTAT
49366109 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
1 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
*
49366174 GTGCTAGTGTTGTATCCGGACTAAGTTCCGA
66 GTGCTAGTGTTATATCCGGACTAAGTTCCGA
* * *
49366205 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAGTTCCGAAGAGCATTC
1 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
*
49366270 GTGCTGGTGTTATATCCGG
66 GTGCTAGTGTTATATCCGG
49366289 GCTAGGTCCC
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
96 79 1.00
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (96 bp):
CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCGAAGAGCATTC
GTGCTAGTGTTATATCCGGACTAAGTTCCGA
Found at i:49366315 original size:40 final size:40
Alignment explanation
Indices: 49366205--49366319 Score: 149
Period size: 40 Copynumber: 2.9 Consensus size: 40
49366195 TAAGTTCCGA
* * *
49366205 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATAT
* * *
49366245 CCGTGCTAAGTTCCGAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATAT
* * *
49366285 CCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
49366320 CGTGTATTCG
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATATAT
Found at i:49369951 original size:49 final size:49
Alignment explanation
Indices: 49369891--49370110 Score: 349
Period size: 49 Copynumber: 4.6 Consensus size: 49
49369881 GATAATTGTG
49369891 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
49369938 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
49369985 ATGTGAAAGTGTATATATATGTGGTAAGGCCTAATGGCCGATGTTATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49370034 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATAA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49370083 ATGTGAAAGTGTATATATGTGATGATAA
1 ATGTGAAAGTGTATATATATG-TGATAA
49370111 ATGTGAAAGT
Statistics
Matches: 158, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
47 50 0.32
48 2 0.01
49 100 0.63
50 6 0.04
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:49370102 original size:16 final size:16
Alignment explanation
Indices: 49370083--49370132 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
49370073 GATGTGATAA
49370083 ATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATAT
*
49370099 ATGTG--A-TG-ATAA
1 ATGTGAAAGTGTATAT
49370111 ATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATAT
49370127 ATGTGA
1 ATGTGA
49370133 TGAGGCCTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 8 0.29
13 2 0.07
14 2 0.07
15 2 0.07
16 14 0.50
ACGTcount: A:0.38, C:0.00, G:0.26, T:0.36
Consensus pattern (16 bp):
ATGTGAAAGTGTATAT
Found at i:49370111 original size:28 final size:28
Alignment explanation
Indices: 49370077--49370135 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
49370067 ATGGCCGATG
49370077 TGATAAATGTGAAAGTGTATATATGTGA
1 TGATAAATGTGAAAGTGTATATATGTGA
49370105 TGATAAATGTGAAAGTGTATATATGTGA
1 TGATAAATGTGAAAGTGTATATATGTGA
49370133 TGA
1 TGA
49370136 GGCCTAATGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.39, C:0.00, G:0.25, T:0.36
Consensus pattern (28 bp):
TGATAAATGTGAAAGTGTATATATGTGA
Found at i:49370161 original size:75 final size:76
Alignment explanation
Indices: 49370033--49370180 Score: 262
Period size: 75 Copynumber: 1.9 Consensus size: 76
49370023 CGATGTTATG
49370033 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATA
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATA
49370098 TATGTGATGATA
65 TATGTGATGATA
* *
49370110 AATGTGAAAGTG-TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATAT
49370174 ATGTGAT
66 ATGTGAT
49370181 AAGGCCTAAT
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
75 57 0.83
77 12 0.17
ACGTcount: A:0.34, C:0.05, G:0.28, T:0.32
Consensus pattern (76 bp):
AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATAT
ATGTGATGATA
Found at i:49370165 original size:47 final size:47
Alignment explanation
Indices: 49370105--49370320 Score: 303
Period size: 47 Copynumber: 4.6 Consensus size: 47
49370095 ATATATGTGA
*
49370105 TGATAAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATG
* *
49370152 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATG
*
49370199 TGATGAATGTGAAACTGTATATATGTGATGAGGCCTAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATG
* * * *
49370246 TGATGAATGTGAAAGTGTATATATGTGA-CAGAG-CTGA-GTGCCAACG
1 TGATGAATGTGAAAGTGTATATATGTGATGAG-GCCTAATG-GCCGATG
* *
49370292 TGATGGATGTGAAAGTGTATAAATGTGAT
1 TGATGAATGTGAAAGTGTATATATGTGAT
49370321 AAGTCCCGAA
Statistics
Matches: 153, Mismatches: 13, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
45 1 0.01
46 36 0.24
47 116 0.76
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATG
Found at i:49370218 original size:122 final size:124
Alignment explanation
Indices: 49369979--49370229 Score: 407
Period size: 122 Copynumber: 2.0 Consensus size: 124
49369969 ATGGCCAATG
* * *
49369979 TGATGAATGTGAAAGTGTATATATATGTGGTAAGGCCTAATGGCCGATGTTATGAATGTGAAAGT
1 TGATAAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
* *
49370044 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATGTGA
65 G-ATATATATGTGATAAGGCCTAATAGCCGATGTGATAAATGTGAAACTGTATATATGTGA
*
49370105 TGATAAATGTGAAAGTG-TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGATAAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
49370169 -TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAACTGTATATATGTGA
66 ATATATATGTGATAAGGCCTAATAGCCGATGTGATAAATGTGAAACTGTATATATGTGA
49370227 TGA
1 TGA
49370230 GGCCTAATGG
Statistics
Matches: 118, Mismatches: 7, Indels: 4
0.91 0.05 0.03
Matches are distributed among these distances:
122 58 0.49
124 44 0.37
126 16 0.14
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.32
Consensus pattern (124 bp):
TGATAAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
ATATATATGTGATAAGGCCTAATAGCCGATGTGATAAATGTGAAACTGTATATATGTGA
Found at i:49374712 original size:24 final size:23
Alignment explanation
Indices: 49374681--49374726 Score: 74
Period size: 24 Copynumber: 2.0 Consensus size: 23
49374671 CAATATAATA
*
49374681 GGAAGCTCACCAAGAGCCATATCG
1 GGAAGCTCACAAAGAGCC-TATCG
49374705 GGAAGCTCACAAAGAGCCTATC
1 GGAAGCTCACAAAGAGCCTATC
49374727 AAGAAGCTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.35, C:0.28, G:0.24, T:0.13
Consensus pattern (23 bp):
GGAAGCTCACAAAGAGCCTATCG
Found at i:49374732 original size:23 final size:24
Alignment explanation
Indices: 49374682--49374734 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
49374672 AATATAATAG
* **
49374682 GAAGCTCACCAAGAGCCATATCGG
1 GAAGCTCACAAAGAGCCATATCAA
49374706 GAAGCTCACAAAGAGCC-TATCAA
1 GAAGCTCACAAAGAGCCATATCAA
49374729 GAAGCT
1 GAAGCT
49374735 TATCTGGGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 10 0.38
24 16 0.62
ACGTcount: A:0.38, C:0.26, G:0.23, T:0.13
Consensus pattern (24 bp):
GAAGCTCACAAAGAGCCATATCAA
Found at i:49377464 original size:15 final size:15
Alignment explanation
Indices: 49377444--49377475 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
49377434 AAACCTATAG
*
49377444 AAGTTAAATTAAACT
1 AAGTTAAATAAAACT
49377459 AAGTTAAATAAAACT
1 AAGTTAAATAAAACT
49377474 AA
1 AA
49377476 CAGAATTAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.28
Consensus pattern (15 bp):
AAGTTAAATAAAACT
Found at i:49381082 original size:27 final size:27
Alignment explanation
Indices: 49381034--49381192 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
49381024 GCGAGGCTGC
* *
49381034 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
49381061 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
49381087 CAGATATATGTGGCAGAGCCACTAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
49381114 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
49381141 TAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
49381168 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
49381193 GACGCTTCCT
Statistics
Matches: 113, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
26 10 0.09
27 98 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:49381136 original size:54 final size:54
Alignment explanation
Indices: 49381052--49381192 Score: 230
Period size: 54 Copynumber: 2.6 Consensus size: 54
49381042 GTGACGAAGT
*
49381052 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* * *
49381106 CACTAGATCAGATAATCGTGGCATAGCCACCAGAATAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
49381160 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
49381193 GACGCTTCCT
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 5 0.06
54 75 0.94
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:49381360 original size:28 final size:26
Alignment explanation
Indices: 49381298--49381360 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
49381288 AAAGTAACCC
** * *
49381298 TAGGGGTATAATGGTAATTTTGCACC
1 TAGGGGTATAACAGTAATTTTCCACA
49381324 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAACAGTAATTTTCC--ACA
49381352 TAGGGGTAT
1 TAGGGGTAT
49381361 TCAAGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 20 0.65
28 11 0.35
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.33
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTCCACA
Found at i:49382834 original size:26 final size:26
Alignment explanation
Indices: 49382798--49382904 Score: 198
Period size: 26 Copynumber: 4.1 Consensus size: 26
49382788 GAAATTCCCT
49382798 TCATGGAACATTTACCTAACCCATTA
1 TCATGGAACATTTACCTAACCCATTA
49382824 TCATGGAACATTTACCTAACCCATTA
1 TCATGGAACATTTACCTAACCCATTA
49382850 TCAT-GAAGCATTTACCTAACCCATTA
1 TCATGGAA-CATTTACCTAACCCATTA
49382876 TCATGGAACATTTACCTAACCCATTA
1 TCATGGAACATTTACCTAACCCATTA
49382902 TCA
1 TCA
49382905 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
25 3 0.04
26 73 0.92
27 3 0.04
ACGTcount: A:0.35, C:0.27, G:0.07, T:0.31
Consensus pattern (26 bp):
TCATGGAACATTTACCTAACCCATTA
Found at i:49385594 original size:27 final size:27
Alignment explanation
Indices: 49385564--49385618 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
49385554 TATAGAAGGA
49385564 TGATAATACTAGAAAGAACATATGTTT
1 TGATAATACTAGAAAGAACATATGTTT
* *
49385591 TGATAGTATTAGAAAGAACATATGTTT
1 TGATAATACTAGAAAGAACATATGTTT
49385618 T
1 T
49385619 CTCTCTCCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.42, C:0.05, G:0.16, T:0.36
Consensus pattern (27 bp):
TGATAATACTAGAAAGAACATATGTTT
Found at i:49416580 original size:26 final size:26
Alignment explanation
Indices: 49416551--49416710 Score: 257
Period size: 26 Copynumber: 6.2 Consensus size: 26
49416541 TGGTACAAAT
49416551 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
49416577 TGATAATGGATTAGATAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
49416603 TGATAACGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
49416629 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
49416655 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
49416681 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
49416707 TGAT
1 TGAT
49416711 GGGCATTTCA
Statistics
Matches: 121, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 121 1.00
ACGTcount: A:0.34, C:0.08, G:0.23, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Done.