Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 152 of 333
Found at i:49665726 original size:78 final size:77
Alignment explanation
Indices: 49665460--49665754 Score: 285
Period size: 77 Copynumber: 3.7 Consensus size: 77
49665450 AAATCAACTA
* * **
49665460 AACAATTCTATTTCAGGATTTTATTCCTGTCGTTTAACAGGATTTGTTTTTTTCTTTTTTTTCGT
1 AACAATTCTGTTTCAGGATTTTATTCCTGTCGTTTAACAAGATTTG-----TTCAATTTTTT-GT
* *
49665525 TTCAAACAAAAAATCATTG
60 TTTAAAC-AGAAATCATTG
* * *
49665544 AACAATTCTGTTTTAGGATTTTATTCATG-CTGTTTAACAAGACTTGTTC--TTTTTTGTTTTAA
1 AACAATTCTGTTTCAGGATTTTATTCCTGTC-GTTTAACAAGATTTGTTCAATTTTTTGTTTTAA
**
49665606 ATGGAAAATCTATTG
65 ACAG-AAATC-ATTG
* *
49665621 AACAATTTTGTTTCAAGATTTTATTCCTGTCGTTTAACAAGATTTGTTCAATTTTTTGTTTTAAA
1 AACAATTCTGTTTCAGGATTTTATTCCTGTCGTTTAACAAGATTTGTTCAATTTTTTGTTTTAAA
49665686 CAGAAATCAATTG
66 CAGAAATC-ATTG
* * * *
49665699 AATAATTCTGTTTCAGGATTCTT-TTCCTGTTGTTCAAC-AGAATTTATTCAATTTTT
1 AACAATTCTGTTTCAGGATT-TTATTCCTGTCGTTTAACAAG-ATTTGTTCAATTTTT
49665755 GTTGTCAACA
Statistics
Matches: 180, Mismatches: 23, Indels: 22
0.80 0.10 0.10
Matches are distributed among these distances:
76 12 0.07
77 54 0.30
78 54 0.30
79 20 0.11
83 1 0.01
84 39 0.22
ACGTcount: A:0.27, C:0.13, G:0.12, T:0.48
Consensus pattern (77 bp):
AACAATTCTGTTTCAGGATTTTATTCCTGTCGTTTAACAAGATTTGTTCAATTTTTTGTTTTAAA
CAGAAATCATTG
Found at i:49671445 original size:15 final size:16
Alignment explanation
Indices: 49671415--49671445 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
49671405 ATGTTGTAAG
49671415 GGATTGAAGTGGAGAT
1 GGATTGAAGTGGAGAT
49671431 GGATTGAAG-GGAGAT
1 GGATTGAAGTGGAGAT
49671446 ATATATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.32, C:0.00, G:0.45, T:0.23
Consensus pattern (16 bp):
GGATTGAAGTGGAGAT
Found at i:49671552 original size:16 final size:16
Alignment explanation
Indices: 49671531--49671584 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
49671521 TTTCGGTTAG
49671531 ATTAGCTCTTATGAGC
1 ATTAGCTCTTATGAGC
*
49671547 ATTAGCGTGTTATGATAAG-
1 ATTAGC-TCTTATG---AGC
49671566 ATTAGCTCTTATGAGC
1 ATTAGCTCTTATGAGC
49671582 ATT
1 ATT
49671585 GGCGTGTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
15 2 0.06
16 9 0.29
17 6 0.19
18 6 0.19
19 6 0.19
20 2 0.06
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.39
Consensus pattern (16 bp):
ATTAGCTCTTATGAGC
Found at i:49671561 original size:17 final size:17
Alignment explanation
Indices: 49671539--49671595 Score: 55
Period size: 17 Copynumber: 3.3 Consensus size: 17
49671529 AGATTAGCTC
49671539 TTATGAGCATTAGCGTG
1 TTATGAGCATTAGCGTG
*
49671556 TTATGATAAG-ATTAGC-TC
1 TTATG---AGCATTAGCGTG
*
49671574 TTATGAGCATTGGCGTG
1 TTATGAGCATTAGCGTG
49671591 TTATG
1 TTATG
49671596 GTTGGATTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
15 2 0.06
16 5 0.16
17 11 0.34
18 6 0.19
19 6 0.19
20 2 0.06
ACGTcount: A:0.25, C:0.11, G:0.26, T:0.39
Consensus pattern (17 bp):
TTATGAGCATTAGCGTG
Found at i:49671604 original size:35 final size:35
Alignment explanation
Indices: 49671514--49671671 Score: 147
Period size: 35 Copynumber: 4.5 Consensus size: 35
49671504 ACTCTCTGTC
*
49671514 TGGCGTGTT-TCGGTTAGATTAGCTCTTATGAGCAT
1 TGGCGTGTTAT-GGTTGGATTAGCTCTTATGAGCAT
* * **
49671549 TAGCGTGTTATGATAAGATTAGCTCTTATGAGCAT
1 TGGCGTGTTATGGTTGGATTAGCTCTTATGAGCAT
* * *
49671584 TGGCGTGTTATGGTTGGATTAGTTCTTATAAGCAC
1 TGGCGTGTTATGGTTGGATTAGCTCTTATGAGCAT
** * * * * *
49671619 TGTTGTATTTTGGTTGAATTAGATCTTAGGAGCAT
1 TGGCGTGTTATGGTTGGATTAGCTCTTATGAGCAT
* *
49671654 TAGCATGTTATGGTTGGA
1 TGGCGTGTTATGGTTGGA
49671672 CTGACGATGT
Statistics
Matches: 96, Mismatches: 26, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
35 95 0.99
36 1 0.01
ACGTcount: A:0.22, C:0.10, G:0.27, T:0.41
Consensus pattern (35 bp):
TGGCGTGTTATGGTTGGATTAGCTCTTATGAGCAT
Found at i:49681862 original size:20 final size:20
Alignment explanation
Indices: 49681837--49681875 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
49681827 AGGGACTAAA
* *
49681837 ATGAAAAGTTTTAAAATTTG
1 ATGAAAAATTGTAAAATTTG
49681857 ATGAAAAATTGTAAAATTT
1 ATGAAAAATTGTAAAATTT
49681876 TATTAATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.38
Consensus pattern (20 bp):
ATGAAAAATTGTAAAATTTG
Found at i:49684049 original size:46 final size:46
Alignment explanation
Indices: 49683981--49684156 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 46
49683971 TGTAACCCGC
** * * *
49683981 CCATAAGAAAACTCGGAATCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* * * **
49684027 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATG-CCTAATT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCA-T
* *** * *
49684073 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
*
49684120 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
49684157 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 25, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
45 2 0.02
46 66 0.65
47 32 0.31
48 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:49684117 original size:93 final size:93
Alignment explanation
Indices: 49683990--49684159 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
49683980 CCCATAAGAA
* * *
49683990 AACTCGGAATCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
1 AACTCGGAATCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
49684055 GAGCTCGGATGCCTAATTACATCTCTCG
66 GAGCTCGGATGCCTAATTACATCTCTCG
* * *
49684083 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGAATCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
*
49684148 GAGTTCGGATGC
66 GAGCTCGGATGC
49684160 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
AACTCGGAATCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
GAGCTCGGATGCCTAATTACATCTCTCG
Found at i:49684175 original size:46 final size:45
Alignment explanation
Indices: 49684032--49684175 Score: 127
Period size: 46 Copynumber: 3.1 Consensus size: 45
49684022 CGCATCCATA
* * *
49684032 AGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAATTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AA--CCATC-CT
* *
49684081 --CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCA-AC-CATCC-T
49684124 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCCT
49684171 AGTGA
1 AGTGA
49684176 CATGTCACTT
Statistics
Matches: 78, Mismatches: 7, Indels: 23
0.72 0.06 0.21
Matches are distributed among these distances:
42 1 0.01
43 6 0.08
44 1 0.01
46 34 0.44
47 28 0.36
48 5 0.06
49 1 0.01
50 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCCT
Found at i:49689831 original size:21 final size:21
Alignment explanation
Indices: 49689805--49689846 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
49689795 CATGTTTTAG
49689805 GCTCAGAGACTAAATTGAATA
1 GCTCAGAGACTAAATTGAATA
49689826 GCTCAGAGACTAAATTGAATA
1 GCTCAGAGACTAAATTGAATA
49689847 AAAGTAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.19, T:0.24
Consensus pattern (21 bp):
GCTCAGAGACTAAATTGAATA
Found at i:49719427 original size:47 final size:47
Alignment explanation
Indices: 49719368--49719927 Score: 946
Period size: 47 Copynumber: 11.9 Consensus size: 47
49719358 TAGTATGGTG
* *
49719368 TAATGGCCGATGTGATGAATATGAAGGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
49719415 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
49719462 TAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
49719509 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
49719556 -AATGG-CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
49719601 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
49719648 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
49719695 TAATGGCCGATGTGATGAATGTGAAAG-GTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
**
49719741 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATTGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
49719790 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
49719837 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
49719884 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
49719928 TCCCGAAGGG
Statistics
Matches: 486, Mismatches: 22, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
45 39 0.08
46 55 0.11
47 347 0.71
49 45 0.09
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:49719689 original size:186 final size:188
Alignment explanation
Indices: 49719368--49719927 Score: 955
Period size: 186 Copynumber: 3.0 Consensus size: 188
49719358 TAGTATGGTG
* *
49719368 TAATGGCCGATGTGATGAATATGAAGGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49719433 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATAT
66 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
49719498 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGCC
131 GTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
49719556 -AATGG-CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
49719619 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
66 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
49719684 GTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTATATATGTGATAAGGCC
131 GTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
**
49719741 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATTGGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
49719806 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
64 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * *
49719871 ATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
129 ATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
49719928 TCCCGAAGGG
Statistics
Matches: 353, Mismatches: 14, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
185 18 0.05
186 162 0.46
187 27 0.08
189 131 0.37
190 15 0.04
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (188 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:49720102 original size:37 final size:37
Alignment explanation
Indices: 49720046--49720124 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
49720036 CCGAGCTCTA
* * * *
49720046 AAGACCCGATGACTACGTGTGGGGATTTTGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
49720083 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
49720120 AAGAC
1 AAGAC
49720125 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:49721580 original size:40 final size:40
Alignment explanation
Indices: 49721337--49721562 Score: 355
Period size: 40 Copynumber: 5.7 Consensus size: 40
49721327 GAGAATTGAG
49721337 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
49721377 AGTGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
49721417 AGTGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
49721457 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * *
49721497 AGTAATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCC-CGAGGAGCATTCGTGCT
* * *
49721537 GGTGTTATATCCGGGCTAGGTCCCGA
1 AGTGATATATCCGGGCTAAGTCCCGA
49721563 AGAGTAATCA
Statistics
Matches: 172, Mismatches: 12, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
39 2 0.01
40 168 0.98
41 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:49725032 original size:47 final size:47
Alignment explanation
Indices: 49724973--49725474 Score: 803
Period size: 47 Copynumber: 10.9 Consensus size: 47
49724963 TAGTATGGTG
*
49724973 TAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
49725020 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
49725067 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
49725114 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
49725161 CAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
49725208 CAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
49725255 CAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
49725302 TAATGGCCGATGTGATGAATGTGAAAGTG------TGT-AT-A----
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
49725337 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
49725384 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
49725431 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
49725475 TCCCGAAGGG
Statistics
Matches: 428, Mismatches: 15, Indels: 24
0.92 0.03 0.05
Matches are distributed among these distances:
35 29 0.07
40 2 0.00
41 6 0.01
42 2 0.00
43 1 0.00
47 388 0.91
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:49725342 original size:35 final size:35
Alignment explanation
Indices: 49725302--49725372 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
49725292 TGATAGGGCC
*
49725302 TAATGGCCGATGTGATGAATGTGAAAGTGTGTATA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATA
49725337 TAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATA
49725372 T
1 T
49725373 GTGATAAGGC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.32, C:0.06, G:0.30, T:0.32
Consensus pattern (35 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:49725355 original size:82 final size:82
Alignment explanation
Indices: 49725256--49725419 Score: 310
Period size: 82 Copynumber: 2.0 Consensus size: 82
49725246 GATAAGGCCC
*
49725256 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAA
1 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
49725321 TGTGAAAGTGTGTATAT
66 TGTGAAAGTGTATATAT
49725338 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
49725403 TGTGAAAGTGTATATAT
66 TGTGAAAGTGTATATAT
49725420 GTGACAGGGC
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 80 1.00
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.30
Consensus pattern (82 bp):
AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
TGTGAAAGTGTATATAT
Found at i:49725649 original size:37 final size:37
Alignment explanation
Indices: 49725593--49725671 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
49725583 CCGAGCTCTA
* * *
49725593 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
49725630 AAGACCCGATAACTTCGTGTGGAGATTATGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
49725667 AAGAC
1 AAGAC
49725672 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:49729803 original size:46 final size:46
Alignment explanation
Indices: 49729753--49729928 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
49729743 TGGTTGAGCA
*
49729753 TCCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* * *
49729799 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G
* *
49729844 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
49729892 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
49729929 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:49729909 original size:93 final size:93
Alignment explanation
Indices: 49729750--49729920 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
49729740 GGATGGTTGA
* * * *
49729750 GCATCCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGTGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
49729815 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
49729843 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
49729908 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
49729921 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:49733201 original size:14 final size:14
Alignment explanation
Indices: 49733178--49733210 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
49733168 TGCCTGAAGC
49733178 AATT-AAAAAGAAA
1 AATTAAAAAAGAAA
49733191 AATTAAAAAAGAAA
1 AATTAAAAAAGAAA
49733205 AATTAA
1 AATTAA
49733211 GCTAAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.21
14 15 0.79
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (14 bp):
AATTAAAAAAGAAA
Found at i:49735408 original size:23 final size:23
Alignment explanation
Indices: 49735376--49735435 Score: 111
Period size: 23 Copynumber: 2.6 Consensus size: 23
49735366 CATGCCCACC
*
49735376 AACCCTACACACCAACTCCGTCT
1 AACCCAACACACCAACTCCGTCT
49735399 AACCCAACACACCAACTCCGTCT
1 AACCCAACACACCAACTCCGTCT
49735422 AACCCAACACACCA
1 AACCCAACACACCA
49735436 TGTGGGGATA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.37, C:0.48, G:0.03, T:0.12
Consensus pattern (23 bp):
AACCCAACACACCAACTCCGTCT
Found at i:49735484 original size:40 final size:40
Alignment explanation
Indices: 49735438--49735513 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
49735428 ACACACCATG
*
49735438 TGGGGATAAAATCGACCCA-CCTATCCCTGCACACCAAATT
1 TGGGGATAAAATCGACCCATCCAAT-CCTGCACACCAAATT
*
49735478 TGGGGATAAAATTGACCCATCCAATCCTGCACACCA
1 TGGGGATAAAATCGACCCATCCAATCCTGCACACCA
49735514 TAAAGTACTG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
40 29 0.88
41 4 0.12
ACGTcount: A:0.33, C:0.32, G:0.16, T:0.20
Consensus pattern (40 bp):
TGGGGATAAAATCGACCCATCCAATCCTGCACACCAAATT
Found at i:49737704 original size:17 final size:17
Alignment explanation
Indices: 49737684--49737716 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
49737674 TAGAATTGAG
49737684 TTGAGAAAATAATTTAA
1 TTGAGAAAATAATTTAA
*
49737701 TTGAGAAATTAATTTA
1 TTGAGAAAATAATTTA
49737717 GTTAATTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.39
Consensus pattern (17 bp):
TTGAGAAAATAATTTAA
Found at i:49737723 original size:9 final size:9
Alignment explanation
Indices: 49737707--49737741 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
49737697 TTAATTGAGA
49737707 AATTAATTT
1 AATTAATTT
*
49737716 AGTTAATTT
1 AATTAATTT
*
49737725 AATTAATTA
1 AATTAATTT
49737734 AATTAATT
1 AATTAATT
49737742 GAGTAAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (9 bp):
AATTAATTT
Found at i:49737748 original size:13 final size:13
Alignment explanation
Indices: 49737697--49737749 Score: 54
Period size: 13 Copynumber: 4.1 Consensus size: 13
49737687 AGAAAATAAT
49737697 TTAATTGAG-AAA
1 TTAATTGAGTAAA
* *
49737709 TTAATTTAGTTAAT
1 TTAATTGAG-TAAA
* *
49737723 TTAATTAATTAAA
1 TTAATTGAGTAAA
49737736 TTAATTGAGTAAA
1 TTAATTGAGTAAA
49737749 T
1 T
49737750 AAATAATATT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
12 8 0.25
13 15 0.47
14 9 0.28
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.45
Consensus pattern (13 bp):
TTAATTGAGTAAA
Found at i:49741032 original size:27 final size:27
Alignment explanation
Indices: 49740942--49741020 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
49740932 AGCTCAGTTT
* * * *
49740942 GTAAAATTACCAAAATACCCTTGTAGA
1 GTAAAATGACCATAATACCCCTGTACA
* *
49740969 GTAAAATGACCGTAATGCCCCTGTACA
1 GTAAAATGACCATAATACCCCTGTACA
49740996 GTAAAATGACCATAATACCCCTGTA
1 GTAAAATGACCATAATACCCCTGTA
49741021 TGTTAGAATG
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.39, C:0.23, G:0.14, T:0.24
Consensus pattern (27 bp):
GTAAAATGACCATAATACCCCTGTACA
Found at i:49741311 original size:22 final size:22
Alignment explanation
Indices: 49741280--49741323 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
49741270 ACCTTTAGTA
*
49741280 GTCCTGTCTACAGCGTTGAGCC
1 GTCCTATCTACAGCGTTGAGCC
* *
49741302 GTCCTATCTACGGGGTTGAGCC
1 GTCCTATCTACAGCGTTGAGCC
49741324 ACCCTGTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.14, C:0.30, G:0.30, T:0.27
Consensus pattern (22 bp):
GTCCTATCTACAGCGTTGAGCC
Found at i:49741507 original size:17 final size:18
Alignment explanation
Indices: 49741485--49741518 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
49741475 CACATTGAAG
49741485 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
49741502 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
49741519 CTTCTTTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:49742814 original size:28 final size:28
Alignment explanation
Indices: 49742772--49742874 Score: 143
Period size: 28 Copynumber: 3.7 Consensus size: 28
49742762 TGGCCCCTTT
*
49742772 AGGCCCAATCTCATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
*
49742800 AGGCCCAACCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * * *
49742828 AGACCCAATCACTTTCATTTGGCCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
*
49742856 AGGCCCAATCATATTCATA
1 AGGCCCAATCACATTCATA
49742875 GTCATGCAAT
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 64 1.00
ACGTcount: A:0.27, C:0.35, G:0.14, T:0.24
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:49743128 original size:15 final size:16
Alignment explanation
Indices: 49743087--49743140 Score: 76
Period size: 16 Copynumber: 3.4 Consensus size: 16
49743077 TGTAGCCAAA
49743087 ATTTTGGCTTTTCGGT
1 ATTTTGGCTTTTCGGT
49743103 ATTTTGGCTTTTCGG-
1 ATTTTGGCTTTTCGGT
*
49743118 A-TTTGGACTTTTCAGT
1 ATTTTGG-CTTTTCGGT
49743134 ATTTTGG
1 ATTTTGG
49743141 GATTTACAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
14 5 0.15
15 8 0.24
16 16 0.47
17 5 0.15
ACGTcount: A:0.11, C:0.11, G:0.24, T:0.54
Consensus pattern (16 bp):
ATTTTGGCTTTTCGGT
Found at i:49748271 original size:47 final size:47
Alignment explanation
Indices: 49748192--49749202 Score: 1637
Period size: 47 Copynumber: 21.3 Consensus size: 47
49748182 AAAGTGTATA
*
49748192 TATATATGTGATAA-GCCTAATGGCCGATGTGATGAATGTGAAATTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
49748238 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
49748285 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
49748332 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
49748379 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
49748426 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
49748473 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
49748522 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
49748569 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
49748616 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
49748663 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
49748710 TATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATTG
1 ----TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
49748761 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
49748808 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
49748857 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
49748904 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * *
49748951 TGTATATGTGATAAGGCCTAATAGCCAATGTGATGAATGCGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
49748998 TATATATATGTGTTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
49749047 TATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
49749094 TATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
49749141 TATATATGCGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
49749188 TATAAATGTGATAAG
1 TATATATGTGATAAG
49749203 TCCCGAAGGG
Statistics
Matches: 899, Mismatches: 55, Indels: 21
0.92 0.06 0.02
Matches are distributed among these distances:
46 14 0.02
47 711 0.79
49 130 0.14
51 44 0.05
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:49748559 original size:190 final size:188
Alignment explanation
Indices: 49748192--49749202 Score: 1637
Period size: 190 Copynumber: 5.3 Consensus size: 188
49748182 AAAGTGTATA
* *
49748192 TATATATGTGATAA-GCCTAATGGCCGATGTGATGAATGTGAAATTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
49748256 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49748321 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
131 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
49748379 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
49748444 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
66 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * *
49748509 GAATGTGAAATTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
129 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
49748569 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * *
49748634 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49748699 ATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATTG
131 ATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
49748761 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG
* *
49748826 CCTAATGGCCGATGTGATGAATGTGAAATTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
64 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
49748891 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
129 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * *
49748951 TGTATATGTGATAAGGCCTAATAGCCAATGTGATGAATGCGAAAGTGTATATATATGTGTTAAGG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG
*
49749016 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGGCCGATGTGAT
64 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
49749081 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTG
129 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
49749141 TATATATGCGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
49749203 TCCCGAAGGG
Statistics
Matches: 768, Mismatches: 47, Indels: 17
0.92 0.06 0.02
Matches are distributed among these distances:
187 14 0.02
188 131 0.17
190 445 0.58
192 89 0.12
194 89 0.12
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (188 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:49749422 original size:37 final size:37
Alignment explanation
Indices: 49749321--49749422 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
49749311 CCGAGCTCTA
*
49749321 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
49749358 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* * *
49749395 AAGACCCGATAACTTCATGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGATTT
49749423 CGTCTGAGCT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:49752011 original size:17 final size:18
Alignment explanation
Indices: 49751989--49752022 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
49751979 CACATTGAAG
49751989 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
49752006 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
49752023 CTTTATAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:49756357 original size:47 final size:47
Alignment explanation
Indices: 49756279--49756728 Score: 753
Period size: 47 Copynumber: 9.6 Consensus size: 47
49756269 CCCTTCGGGA
* * * * *
49756279 CTTATCACA-ATTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATA-TATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49756326 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49756373 CTTATCACATATAT--ACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49756418 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49756467 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
49756514 CTTATCACATATATACACTTTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
49756561 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49756608 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49756655 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49756702 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
49756729 TATTCAAATA
Statistics
Matches: 381, Mismatches: 17, Indels: 10
0.93 0.04 0.02
Matches are distributed among these distances:
45 39 0.10
47 304 0.80
48 1 0.00
49 37 0.10
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:49757262 original size:22 final size:22
Alignment explanation
Indices: 49757237--49757290 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
49757227 ATTTACGGCC
* *
49757237 TTTAGCTGTCCTGTCTATGGTG
1 TTTAGCTGTCCTGTATACGGTG
49757259 TTTAG-TAGTCCTGTATACGGTG
1 TTTAGCT-GTCCTGTATACGGTG
*
49757281 TTGAGCTGTC
1 TTTAGCTGTC
49757291 TTGTTGACTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 1 0.04
22 25 0.93
23 1 0.04
ACGTcount: A:0.13, C:0.17, G:0.28, T:0.43
Consensus pattern (22 bp):
TTTAGCTGTCCTGTATACGGTG
Found at i:49765273 original size:27 final size:27
Alignment explanation
Indices: 49765233--49765344 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
49765223 AGGAAGCGTC
*
49765233 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
49765260 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
49765287 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * * *
49765315 CTGGTGACTCTGTCGC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
49765341 CTGG
1 CTGG
49765345 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 8 0.11
27 49 0.66
28 17 0.23
ACGTcount: A:0.14, C:0.24, G:0.24, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:49765339 original size:54 final size:54
Alignment explanation
Indices: 49765233--49765344 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
49765223 AGGAAGCGTC
* *
49765233 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * *
49765287 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCGCAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
49765341 CTGG
1 CTGG
49765345 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.14, C:0.24, G:0.24, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:49768868 original size:15 final size:16
Alignment explanation
Indices: 49768834--49768865 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
49768824 GTTACATTAG
49768834 CCAACTAAGTGACTCT
1 CCAACTAAGTGACTCT
49768850 CCAACTAA-TGAC-CT
1 CCAACTAAGTGACTCT
49768864 CC
1 CC
49768866 CAAGACACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.25
15 4 0.25
16 8 0.50
ACGTcount: A:0.31, C:0.38, G:0.09, T:0.22
Consensus pattern (16 bp):
CCAACTAAGTGACTCT
Found at i:49776460 original size:49 final size:49
Alignment explanation
Indices: 49776406--49776628 Score: 179
Period size: 49 Copynumber: 4.6 Consensus size: 49
49776396 ACATCAAATT
* * *
49776406 CGATGCCATGTCCCAGACAGGTCTTGCACTTACTTTCATATATCAAGCC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCAAGGC
* ** * * ** *
49776455 CGATGCCGTGTCCCAGACAGGTCTTACACTGGCTCTCATCTA-CCGGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCAAG-GC
* * *
49776504 CGATGCCATGTCCTAGACAGGTCTTACACTAACTTGT-ATATCTCGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAACTT-TCATATATCAAGGC
** ** * **
49776553 CGATG-CATGTCCCAGACATATCTTACACTGGCTCTCATA-AT-GTGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCAAGGC
* *
49776599 CGATG-CATGTCTCAGACATGTCTTACACTA
1 CGATGCCATGTCCCAGACAGGTCTTACACTA
49776629 GCACACAAAT
Statistics
Matches: 139, Mismatches: 31, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
46 31 0.22
47 2 0.01
48 28 0.20
49 75 0.54
50 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCAAGGC
Found at i:49776556 original size:98 final size:97
Alignment explanation
Indices: 49776405--49776590 Score: 266
Period size: 98 Copynumber: 1.9 Consensus size: 97
49776395 CACATCAAAT
* * *
49776405 TCGATGCCATGTCCCAGACAGGTCTTGCACTTACTTTCATATATCAAGCCCGATGCCGTGTCCCA
1 TCGATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCAAGCCCGATG-CATGTCCCA
*
49776470 GACAGGTCTTACACTGGCTCTCATCTACCGGTG
65 GACAGATCTTACACTGGCTCTCATCTACCGGTG
* * * *
49776503 TCGATGCCATGTCCTAGACAGGTCTTACACTAACTTGT-ATATCTCGAGGCCGATGCATGTCCCA
1 TCGATGCCATGTCCCAGACAGGTCTTACACTAACTT-TCATATATCAAGCCCGATGCATGTCCCA
*
49776567 GACATATCTTACACTGGCTCTCAT
65 GACAGATCTTACACTGGCTCTCAT
49776591 AATGTGGCCG
Statistics
Matches: 78, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
97 30 0.38
98 47 0.60
99 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.28
Consensus pattern (97 bp):
TCGATGCCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCAAGCCCGATGCATGTCCCAG
ACAGATCTTACACTGGCTCTCATCTACCGGTG
Found at i:49778098 original size:30 final size:30
Alignment explanation
Indices: 49778064--49778143 Score: 133
Period size: 30 Copynumber: 2.7 Consensus size: 30
49778054 ATTTACTGAA
*
49778064 ATGTGGAAGCCTTTGTGGTTTTTCTCAAAT
1 ATGTGGAAGCCTTTATGGTTTTTCTCAAAT
* *
49778094 ATGTGGAAGCCTTTATGGCTTTTCTCAGAT
1 ATGTGGAAGCCTTTATGGTTTTTCTCAAAT
49778124 ATGTGGAAGCCTTTATGGTT
1 ATGTGGAAGCCTTTATGGTT
49778144 ATTTTCAGTT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 46 1.00
ACGTcount: A:0.20, C:0.14, G:0.25, T:0.41
Consensus pattern (30 bp):
ATGTGGAAGCCTTTATGGTTTTTCTCAAAT
Found at i:49778164 original size:30 final size:30
Alignment explanation
Indices: 49778067--49778164 Score: 108
Period size: 30 Copynumber: 3.3 Consensus size: 30
49778057 TACTGAAATG
* * * *
49778067 TGGAAGCCTTTGTGGTTTTTCTCAAATATG
1 TGGAAGCCTTTATGGCTTTTCTCAGATATA
*
49778097 TGGAAGCCTTTATGGCTTTTCTCAGATATG
1 TGGAAGCCTTTATGGCTTTTCTCAGATATA
* *
49778127 TGGAAGCCTTTATGG-TTATTTTCAGTTATA
1 TGGAAGCCTTTATGGCTT-TTCTCAGATATA
*
49778157 TGTAAGCC
1 TGGAAGCC
49778165 CTAGTGGCAA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
29 2 0.03
30 58 0.97
ACGTcount: A:0.21, C:0.14, G:0.22, T:0.42
Consensus pattern (30 bp):
TGGAAGCCTTTATGGCTTTTCTCAGATATA
Found at i:49778193 original size:29 final size:29
Alignment explanation
Indices: 49778151--49778260 Score: 94
Period size: 29 Copynumber: 3.8 Consensus size: 29
49778141 GTTATTTTCA
* *
49778151 GTTATATGTAAGCCCTAGTGGCAAAACCT
1 GTTATATGTGAGCCTTAGTGGCAAAACCT
* * * **
49778180 GTTATGTGTGAGCCTTTGTGGCTATTCTCT
1 GTTATATGTGAGCCTTAGTGGCAAAAC-CT
* **
49778210 GTTATATGTGAGCCTTGGTGGTGAAACCT
1 GTTATATGTGAGCCTTAGTGGCAAAACCT
* * *
49778239 ATTATGTGTGAGCCTTTGTGGC
1 GTTATATGTGAGCCTTAGTGGC
49778261 TATTCTCTAT
Statistics
Matches: 63, Mismatches: 17, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
29 40 0.63
30 23 0.37
ACGTcount: A:0.19, C:0.16, G:0.27, T:0.37
Consensus pattern (29 bp):
GTTATATGTGAGCCTTAGTGGCAAAACCT
Found at i:49778214 original size:30 final size:30
Alignment explanation
Indices: 49778181--49778404 Score: 145
Period size: 30 Copynumber: 7.5 Consensus size: 30
49778171 GCAAAACCTG
* *
49778181 TTATGTGTGAGCCTTTGTGGCTATTCTCTG
1 TTATATGTGAGCCTTTGTGGCTATTCTCTA
* **
49778211 TTATATGTGAGCCTTGGTGG-TGAAAC-CTA
1 TTATATGTGAGCCTTTGTGGCT-ATTCTCTA
*
49778240 TTATGTGTGAGCCTTTGTGGCTATTCTCTA
1 TTATATGTGAGCCTTTGTGGCTATTCTCTA
* * ** * ** *
49778270 TAATATGTGAGCCTTTTTTACAAAAC-CTT
1 TTATATGTGAGCCTTTGTGGCTATTCTCTA
*
49778299 TTATATGTGGAAGCCTTTTTGGCTATTCTCTA
1 TTATATGT-G-AGCCTTTGTGGCTATTCTCTA
* * * * *
49778331 TTACATGTGAGCCCTAGTGG-TGAAAT-T-TG
1 TTATATGTGAGCCTTTGTGGCT--ATTCTCTA
* ** *
49778360 TTATGTGCAAGCCTTTGTGGTTATTCTCTA
1 TTATATGTGAGCCTTTGTGGCTATTCTCTA
49778390 TTATATGTGAGCCTT
1 TTATATGTGAGCCTT
49778405 ATTAATGGAT
Statistics
Matches: 141, Mismatches: 42, Indels: 22
0.69 0.20 0.11
Matches are distributed among these distances:
28 2 0.01
29 49 0.35
30 66 0.47
31 15 0.11
32 9 0.06
ACGTcount: A:0.20, C:0.16, G:0.22, T:0.43
Consensus pattern (30 bp):
TTATATGTGAGCCTTTGTGGCTATTCTCTA
Found at i:49778214 original size:59 final size:59
Alignment explanation
Indices: 49778152--49778402 Score: 268
Period size: 59 Copynumber: 4.2 Consensus size: 59
49778142 TTATTTTCAG
* *
49778152 TTATATGTAAGCCCTAGTGGCAAAACCTGTTATGTGTGAGCCTTTGTGGCTATTCTCTG
1 TTATATGTGAGCCCTAGTGGCAAAACCTGTTATGTGTGAGCCTTTGTGGCTATTCTCTA
* * ** *
49778211 TTATATGTGAGCCTTGGTGGTGAAACCTATTATGTGTGAGCCTTTGTGGCTATTCTCTA
1 TTATATGTGAGCCCTAGTGGCAAAACCTGTTATGTGTGAGCCTTTGTGGCTATTCTCTA
* * ** ** * * *
49778270 TAATATGTGAGCCTTTTTTACAAAACCTTTTATATGTGGAAGCCTTTTTGGCTATTCTCTA
1 TTATATGTGAGCCCTAGTGGCAAAACCTGTTATGTGT-G-AGCCTTTGTGGCTATTCTCTA
* ** ** ** *
49778331 TTACATGTGAGCCCTAGTGGTGAAATTTGTTATGTGCAAGCCTTTGTGGTTATTCTCTA
1 TTATATGTGAGCCCTAGTGGCAAAACCTGTTATGTGTGAGCCTTTGTGGCTATTCTCTA
49778390 TTATATGTGAGCC
1 TTATATGTGAGCC
49778403 TTATTAATGG
Statistics
Matches: 155, Mismatches: 35, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
59 111 0.72
60 1 0.01
61 43 0.28
ACGTcount: A:0.21, C:0.16, G:0.22, T:0.41
Consensus pattern (59 bp):
TTATATGTGAGCCCTAGTGGCAAAACCTGTTATGTGTGAGCCTTTGTGGCTATTCTCTA
Found at i:49778339 original size:120 final size:118
Alignment explanation
Indices: 49778172--49778404 Score: 322
Period size: 120 Copynumber: 2.0 Consensus size: 118
49778162 GCCCTAGTGG
* * * * *
49778172 CAAAACCTGTTATGTGTGAGCCTTTGTGGCTATTCTCTGTTATATGTGAGCCTTGGTGGTGAAAC
1 CAAAACCTGTTATATGTGAGCCTTTGTGGCTATTCTCTATTACATGTGAGCCCTAGTGGTGAAAC
**
49778237 CTATTATGTGTGAGCCTTTGTGGCTATTCTCTATAATATGTGAGCCTTTTTTA
66 CTATTATGTGCAAGCCTTTGTGGCTATTCTCTATAATATGTGAGCCTTTTTTA
* *
49778290 CAAAACCTTTTATATGTGGAAGCCTTTTTGGCTATTCTCTATTACATGTGAGCCCTAGTGGTGAA
1 CAAAACCTGTTATATGT-G-AGCCTTTGTGGCTATTCTCTATTACATGTGAGCCCTAGTGGTGAA
** * * *
49778355 ATTTGTTATGTGCAAGCCTTTGTGGTTATTCTCTATTATATGTGAGCCTT
64 ACCTATTATGTGCAAGCCTTTGTGGCTATTCTCTATAATATGTGAGCCTT
49778405 ATTAATGGAT
Statistics
Matches: 99, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
118 15 0.15
119 1 0.01
120 83 0.84
ACGTcount: A:0.21, C:0.16, G:0.21, T:0.42
Consensus pattern (118 bp):
CAAAACCTGTTATATGTGAGCCTTTGTGGCTATTCTCTATTACATGTGAGCCCTAGTGGTGAAAC
CTATTATGTGCAAGCCTTTGTGGCTATTCTCTATAATATGTGAGCCTTTTTTA
Found at i:49778626 original size:30 final size:29
Alignment explanation
Indices: 49778591--49778661 Score: 88
Period size: 30 Copynumber: 2.4 Consensus size: 29
49778581 TTGGATGCCC
* * *
49778591 TTGTGGCTATCTAATGATGTATGGAATTCT
1 TTGTGGCTATCTAAGGATGAATGG-ATACT
*
49778621 TTGTGGCTATCTAAGGATGAATGGGTACT
1 TTGTGGCTATCTAAGGATGAATGGATACT
49778650 TTCGTGGCTATC
1 TT-GTGGCTATC
49778662 CAAGTCAAGT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
29 5 0.14
30 31 0.86
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.39
Consensus pattern (29 bp):
TTGTGGCTATCTAAGGATGAATGGATACT
Found at i:49789404 original size:194 final size:194
Alignment explanation
Indices: 49789075--49789467 Score: 777
Period size: 194 Copynumber: 2.0 Consensus size: 194
49789065 CACATGCTAG
49789075 GTTAGTCCGAGAACCGACTAAACCTACTCTGATACCACCAAATGTAATGCCCCGTACCCGAGACC
1 GTTAGTCCGAGAACCGACTAAACCTACTCTGATACCACCAAATGTAATGCCCCGTACCCGAGACC
*
49789140 GTTGCTGAAGTCGAACACGAGGTGTTAACAGACTTAATTCATTACTTAAACAGCTCAAACAATTT
66 GTTGCTGAAGTCGAACACGAGGTGTTAACAGACCTAATTCATTACTTAAACAGCTCAAACAATTT
49789205 ATTTTTAAAATTTTCAGTCAAGCTAACAATCTGCGTCATAGTCGCTTAAAAATTCATATCTCGA
131 ATTTTTAAAATTTTCAGTCAAGCTAACAATCTGCGTCATAGTCGCTTAAAAATTCATATCTCGA
49789269 GTTAGTCCGAGAACCGACTAAACCTACTCTGATACCACCAAATGTAATGCCCCGTACCCGAGACC
1 GTTAGTCCGAGAACCGACTAAACCTACTCTGATACCACCAAATGTAATGCCCCGTACCCGAGACC
49789334 GTTGCTGAAGTCGAACACGAGGTGTTAACAGACCTAATTCATTACTTAAACAGCTCAAACAATTT
66 GTTGCTGAAGTCGAACACGAGGTGTTAACAGACCTAATTCATTACTTAAACAGCTCAAACAATTT
49789399 ATTTTTAAAATTTTCAGTCAAGCTAACAATCTGCGTCATAGTCGCTTAAAAATTCATATCTCGA
131 ATTTTTAAAATTTTCAGTCAAGCTAACAATCTGCGTCATAGTCGCTTAAAAATTCATATCTCGA
49789463 GTTAG
1 GTTAG
49789468 GAAACTCGAA
Statistics
Matches: 198, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
194 198 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (194 bp):
GTTAGTCCGAGAACCGACTAAACCTACTCTGATACCACCAAATGTAATGCCCCGTACCCGAGACC
GTTGCTGAAGTCGAACACGAGGTGTTAACAGACCTAATTCATTACTTAAACAGCTCAAACAATTT
ATTTTTAAAATTTTCAGTCAAGCTAACAATCTGCGTCATAGTCGCTTAAAAATTCATATCTCGA
Found at i:49801114 original size:35 final size:35
Alignment explanation
Indices: 49801061--49801131 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
49801051 ATTAAGGGTG
* * *
49801061 TTTGTAATATTAAGGGATTTAGCCTGGACTTGTAA
1 TTTGTAATAGTAACGGATTTAGCCTGGACTGGTAA
*
49801096 TTTGTCATAGTAACGGATTTAGCCTGGACTGGTAA
1 TTTGTAATAGTAACGGATTTAGCCTGGACTGGTAA
49801131 T
1 T
49801132 CCCGACATCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.27, C:0.11, G:0.24, T:0.38
Consensus pattern (35 bp):
TTTGTAATAGTAACGGATTTAGCCTGGACTGGTAA
Found at i:49802552 original size:46 final size:46
Alignment explanation
Indices: 49802485--49802706 Score: 279
Period size: 46 Copynumber: 4.8 Consensus size: 46
49802475 TGTAACCCGC
* * * *
49802485 CCATAAGTGAATTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * * *
49802531 CCATAAGTGAACTCGGACTCAACTCAACAAGCTC--AGATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* ***
49802577 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
49802624 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
49802670 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
49802707 TGCCCAAATA
Statistics
Matches: 151, Mismatches: 18, Indels: 14
0.83 0.10 0.08
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
46 112 0.74
47 29 0.19
49 5 0.03
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:49805906 original size:39 final size:40
Alignment explanation
Indices: 49805861--49806032 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
49805851 GCTCCTCGTT
* * *
49805861 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
49805901 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
49805940 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
49805980 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
49806020 CAAATGCCTTCGG
1 CAAATGCCTTCGG
49806033 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:49805961 original size:40 final size:39
Alignment explanation
Indices: 49805863--49806085 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
49805853 TCCTCGTTCA
* * * *
49805863 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
49805902 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
49805941 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
49805981 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
49806021 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
49806062 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
49806086 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:49806045 original size:80 final size:79
Alignment explanation
Indices: 49805861--49806085 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
49805851 GCTCCTCGTT
* * * * *
49805861 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
49805925 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
49805940 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
49806005 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
49806020 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
49806084 GA
63 GA
49806086 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:49806094 original size:41 final size:41
Alignment explanation
Indices: 49806017--49806094 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
49806007 TTTGTATCTC
* * *
49806017 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
49806058 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
49806095 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:49810321 original size:27 final size:27
Alignment explanation
Indices: 49810291--49810465 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
49810281 ATATTGAGTC
* *
49810291 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
49810318 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
49810345 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* ** *
49810373 CGCACACTTAGTGC-GCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
49810399 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
49810426 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
49810453 C-CACACTTA-TGCT
1 CGCACACTTAGTGCT
49810466 GTACAATTTA
Statistics
Matches: 127, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
25 3 0.02
26 25 0.20
27 81 0.64
28 18 0.14
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:49810402 original size:54 final size:54
Alignment explanation
Indices: 49810291--49810465 Score: 196
Period size: 54 Copynumber: 3.3 Consensus size: 54
49810281 ATATTGAGTC
* * * * *
49810291 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* * * *
49810345 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGC-GCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
49810399 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
49810453 C-CACACTTA-TGCT
1 CGCACACTTAGTGCT
49810466 GTACAATTTA
Statistics
Matches: 103, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
52 3 0.03
53 25 0.24
54 57 0.55
55 18 0.17
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:49810410 original size:81 final size:79
Alignment explanation
Indices: 49810312--49810461 Score: 212
Period size: 81 Copynumber: 1.9 Consensus size: 79
49810302 TGCTATATAA
* *
49810312 TCAACTCGCACACTTAGTGC-TACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGC
1 TCAACTCGCACACTTAGTGCAT-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TC-C
49810376 ACACTTAGTGCGCATGG
63 ACACTTAGTGCGCATGG
* * **
49810393 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCCACA
1 TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCCACA
49810458 CTTA
66 CTTA
49810462 TGCTGTACAA
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
79 8 0.13
80 2 0.03
81 51 0.82
82 1 0.02
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (79 bp):
TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCCACA
CTTAGTGCGCATGG
Found at i:49818500 original size:27 final size:27
Alignment explanation
Indices: 49818470--49818647 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
49818460 ATATTGAGTC
* *
49818470 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
49818497 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
49818524 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
49818552 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
49818579 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
49818606 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
49818633 CACACACTTACTGCT
1 CGCACACTTAGTGCT
49818648 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:49818609 original size:82 final size:81
Alignment explanation
Indices: 49818491--49818642 Score: 216
Period size: 82 Copynumber: 1.9 Consensus size: 81
49818481 TGCTATATAA
* * *
49818491 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCACA
49818556 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
49818573 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCACA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCACA
49818637 CACTTA
65 CACTTA
49818643 CTGCTGTACA
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
81 11 0.18
82 51 0.82
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCACAC
ACTTAGTGCCGCATGG
Found at i:49822881 original size:41 final size:40
Alignment explanation
Indices: 49822727--49822898 Score: 188
Period size: 40 Copynumber: 4.3 Consensus size: 40
49822717 TCTTCCGGGT
** * * *
49822727 TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
* * * *
49822765 TTAACCCGGATATGGTCACTGGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
*
49822805 TTAGCCCGGATATAGTCGCTAGCACAAATGCCTTC-GGATC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGA-C
* * *
49822845 TTAGTCCGGATGTAGTCACTTAGCACAAAAGCCTTCGGGAC
1 TTAGCCCGGATATAGTCAC-TAGCACAAATGCCTTCGGGAC
49822886 TTAGCCCGGATAT
1 TTAGCCCGGATAT
49822899 CATTCGAGTA
Statistics
Matches: 110, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
38 3 0.03
39 18 0.16
40 59 0.54
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
Found at i:49831061 original size:12 final size:12
Alignment explanation
Indices: 49831044--49831070 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
49831034 ATTCCAAAGT
49831044 ATATATATATAC
1 ATATATATATAC
49831056 ATATATATATAC
1 ATATATATATAC
49831068 ATA
1 ATA
49831071 AGTATGCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:49831603 original size:27 final size:28
Alignment explanation
Indices: 49831519--49831616 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
49831509 CATGAGATTG
* * * *
49831519 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
49831548 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
49831576 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
49831603 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
49831617 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:49831627 original size:27 final size:27
Alignment explanation
Indices: 49831547--49831629 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
49831537 TAAATTGTAC
* *
49831547 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
49831575 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
49831602 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
49831629 A
1 A
49831630 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:49834629 original size:32 final size:33
Alignment explanation
Indices: 49834584--49834652 Score: 113
Period size: 32 Copynumber: 2.1 Consensus size: 33
49834574 AGCCATGGAT
49834584 TGTGTTTAAAATTTAACCATGGATGACATACA-
1 TGTGTTTAAAATTTAACCATGGATGACATACAG
**
49834616 TGTGTTTTGAATTTAACCATGGATGACATACAG
1 TGTGTTTAAAATTTAACCATGGATGACATACAG
49834649 TGTG
1 TGTG
49834653 ATAAACAACT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 30 0.88
33 4 0.12
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.36
Consensus pattern (33 bp):
TGTGTTTAAAATTTAACCATGGATGACATACAG
Found at i:49835362 original size:52 final size:52
Alignment explanation
Indices: 49835268--49835381 Score: 147
Period size: 52 Copynumber: 2.2 Consensus size: 52
49835258 AATATGACAT
* * *
49835268 TGTGCTAAGTAAAATAAGACCATGGCATCTAAATGAATTAAGTTCATGGCAA
1 TGTGCTAAGTAAAATAAGACCATGGCATCTAAATAAAATAAGTCCATGGCAA
* * * * *
49835320 TGTGCTAAGTAAAATAGGCCCATGGCATCTAAGTAAAATAAGTCCATTGCAT
1 TGTGCTAAGTAAAATAAGACCATGGCATCTAAATAAAATAAGTCCATGGCAA
*
49835372 TATGCTAAGT
1 TGTGCTAAGT
49835382 GAGAAATTTT
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (52 bp):
TGTGCTAAGTAAAATAAGACCATGGCATCTAAATAAAATAAGTCCATGGCAA
Found at i:49835366 original size:24 final size:24
Alignment explanation
Indices: 49835272--49835371 Score: 92
Period size: 24 Copynumber: 4.0 Consensus size: 24
49835262 TGACATTGTG
*
49835272 CTAAGTAAAATAAGACCATGGCAT
1 CTAAGTAAAATAAGTCCATGGCAT
* * * *
49835296 CTAAATGAATTAAGTTCATGGCAATGT
1 CTAAGTAAAATAAGTCCATGGC-A--T
* *
49835323 GCTAAGTAAAATAGGCCCATGGCAT
1 -CTAAGTAAAATAAGTCCATGGCAT
*
49835348 CTAAGTAAAATAAGTCCATTGCAT
1 CTAAGTAAAATAAGTCCATGGCAT
49835372 TATGCTAAGT
Statistics
Matches: 58, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
24 38 0.66
25 2 0.03
27 2 0.03
28 16 0.28
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.26
Consensus pattern (24 bp):
CTAAGTAAAATAAGTCCATGGCAT
Found at i:49835470 original size:51 final size:51
Alignment explanation
Indices: 49835407--49835555 Score: 239
Period size: 51 Copynumber: 2.9 Consensus size: 51
49835397 TGAACCTTAG
49835407 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
* * *
49835458 GACTAAAATAGCTTTGGACACAAGTGTGGTACTAGGTGAAGGCCACTTTTT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
49835509 GAATAAAATAGCTTTGG-CTACAAAG-GTGGTACTATGTGAAGGCCACT
1 GAATAAAATAGCTTTGGAC-AC-AAGTGTGGTACTATGTGAAGGCCACT
49835556 ATGTATCCGT
Statistics
Matches: 91, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
50 1 0.01
51 87 0.96
52 3 0.03
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
Found at i:49839222 original size:35 final size:35
Alignment explanation
Indices: 49839182--49839251 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
49839172 AAACACATCC
* * *
49839182 CAAACCGTTTCATGACGCATCACTAAAAATTACTA
1 CAAACCGTTTAATAACGCATCACTAAAAATCACTA
49839217 CAAACCGTTTAATAACGCATCACTAAAAATCACTA
1 CAAACCGTTTAATAACGCATCACTAAAAATCACTA
49839252 ACTCTTTACC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.43, C:0.26, G:0.07, T:0.24
Consensus pattern (35 bp):
CAAACCGTTTAATAACGCATCACTAAAAATCACTA
Found at i:49862657 original size:27 final size:27
Alignment explanation
Indices: 49862626--49862803 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
49862616 TAAATTGTAC
49862626 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
49862653 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
49862679 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
49862707 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
49862735 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
49862762 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
49862789 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
49862804 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:49862740 original size:82 final size:81
Alignment explanation
Indices: 49862627--49862782 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
49862617 AAATTGTACA
* *
49862627 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
49862691 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
49862708 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
49862773 TGCGAGTTGA
65 TGCGAATTGA
49862783 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:49862794 original size:82 final size:81
Alignment explanation
Indices: 49862623--49862803 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
49862613 GATTAAATTG
* *
49862623 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
49862688 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
49862704 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
49862768 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
49862786 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
49862804 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:49870630 original size:27 final size:27
Alignment explanation
Indices: 49870599--49870775 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
49870589 TAAATTGTAC
*
49870599 AGCACTGAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
49870626 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
49870652 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
49870680 GGCACTAAGTGTGCGAGTTTGAC-ATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
49870707 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
49870734 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
49870761 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
49870776 GACTCAATAT
Statistics
Matches: 127, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
26 5 0.04
27 117 0.92
28 5 0.04
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:49870766 original size:81 final size:81
Alignment explanation
Indices: 49870596--49870775 Score: 220
Period size: 81 Copynumber: 2.2 Consensus size: 81
49870586 GATTAAATTG
* *
49870596 TACAGCACTGAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTGAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
49870661 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
49870677 TGCGGCACTAAGTGTGCGAGTTTGAC-ATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTGAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
49870740 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
*
49870758 TATAGCACTGAGTGTGCG
1 TACAGCACTGAGTGTGCG
49870776 GACTCAATAT
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
80 1 0.01
81 75 0.91
82 6 0.07
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTGAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:49872666 original size:37 final size:37
Alignment explanation
Indices: 49872616--49872760 Score: 211
Period size: 37 Copynumber: 3.9 Consensus size: 37
49872606 ACCTTTAGCT
* *
49872616 CGGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
49872653 CGGACAAAATCTCCACACGTAA-TCATCGGGTCTTACC
1 CGGACAAAATCTCCACACG-AAGTCATCGGGTCTTACC
* *
49872690 CGGGCAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
* * *
49872727 CGGACATACTCTCCACACGTAGTCATCGGGTCTT
1 CGGACAAAATCTCCACACGAAGTCATCGGGTCTT
49872761 TAGAGCTCGG
Statistics
Matches: 99, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
36 1 0.01
37 96 0.97
38 2 0.02
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGAAGTCATCGGGTCTTACC
Found at i:49872718 original size:74 final size:74
Alignment explanation
Indices: 49872622--49872760 Score: 233
Period size: 74 Copynumber: 1.9 Consensus size: 74
49872612 AGCTCGGACG
*
49872622 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACAAAATCTCCACACGTAATCATCGGGTCTT
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAATCATCGGGTCTT
49872687 ACCCGGGCA
66 ACCCGGGCA
* * * *
49872696 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACATACTCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAATCATCGGGTCTT
49872761 TAGAGCTCGG
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 60 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.24
Consensus pattern (74 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAATCATCGGGTCTT
ACCCGGGCA
Found at i:49872957 original size:47 final size:47
Alignment explanation
Indices: 49872879--49873326 Score: 648
Period size: 47 Copynumber: 9.6 Consensus size: 47
49872869 CCCTTCGGGA
* * * * * *
49872879 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49872926 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49872973 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49873020 CTTATCACATATATACACTTTCACATTCAT--CA-----CA-T---C
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
49873056 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49873103 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49873152 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49873199 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49873248 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49873295 CTTATCACATATATATACACTTTCACATTCAT
1 CTTATCAC--ATATATACACTTTCACATTCAT
49873327 TCAAATATAC
Statistics
Matches: 364, Mismatches: 20, Indels: 32
0.88 0.05 0.08
Matches are distributed among these distances:
36 31 0.09
38 2 0.01
39 1 0.00
40 2 0.01
43 1 0.00
44 1 0.00
45 2 0.01
47 213 0.59
49 111 0.30
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:49873045 original size:16 final size:16
Alignment explanation
Indices: 49873024--49873081 Score: 64
Period size: 16 Copynumber: 3.4 Consensus size: 16
49873014 TTAGGCCTTA
49873024 TCACATATATACACTT
1 TCACATATATACACTT
49873040 TCACAT-TCATCACATCCTT
1 TCACATAT-AT-ACA--CTT
49873059 ATCACATATATACACTT
1 -TCACATATATACACTT
49873076 TCACAT
1 TCACAT
49873082 TCATCACATC
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
15 1 0.03
16 14 0.39
17 6 0.17
19 6 0.17
20 8 0.22
21 1 0.03
ACGTcount: A:0.34, C:0.29, G:0.00, T:0.36
Consensus pattern (16 bp):
TCACATATATACACTT
Found at i:49873060 original size:36 final size:36
Alignment explanation
Indices: 49873019--49873091 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
49873009 GGCCATTAGG
49873019 CCTTATCACATATATACACTTTCACATTCATCACAT
1 CCTTATCACATATATACACTTTCACATTCATCACAT
49873055 CCTTATCACATATATACACTTTCACATTCATCACAT
1 CCTTATCACATATATACACTTTCACATTCATCACAT
49873091 C
1 C
49873092 GGCTATTAGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.33, C:0.32, G:0.00, T:0.36
Consensus pattern (36 bp):
CCTTATCACATATATACACTTTCACATTCATCACAT
Found at i:49873128 original size:49 final size:47
Alignment explanation
Indices: 49873055--49873326 Score: 445
Period size: 49 Copynumber: 5.7 Consensus size: 47
49873045 TTCATCACAT
*
49873055 CCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGG
1 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
* *
49873102 CCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGG
1 CCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGG
49873151 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
1 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
* *
49873198 CCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGG
1 CCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGG
49873247 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
1 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
49873294 CCTTATCACATATATATACACTTTCACATTCAT
1 CCTTATCAC--ATATATACACTTTCACATTCAT
49873327 TCAAATATAC
Statistics
Matches: 210, Mismatches: 9, Indels: 10
0.92 0.04 0.04
Matches are distributed among these distances:
47 99 0.47
49 111 0.53
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34
Consensus pattern (47 bp):
CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
Found at i:49873163 original size:96 final size:96
Alignment explanation
Indices: 49873055--49873326 Score: 535
Period size: 96 Copynumber: 2.8 Consensus size: 96
49873045 TTCATCACAT
*
49873055 CCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATA
1 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
49873120 CACTTTCACATTCATCACATTGGCCATTCGG
66 CACTTTCACATTCATCACATTGGCCATTCGG
49873151 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
49873216 CACTTTCACATTCATCACATTGGCCATTCGG
66 CACTTTCACATTCATCACATTGGCCATTCGG
49873247 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
49873312 CACTTTCACATTCAT
66 CACTTTCACATTCAT
49873327 TCAAATATAC
Statistics
Matches: 175, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 175 1.00
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34
Consensus pattern (96 bp):
CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
CACTTTCACATTCATCACATTGGCCATTCGG
Found at i:49875699 original size:85 final size:85
Alignment explanation
Indices: 49875570--49875748 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
49875560 TATTTTATTG
*
49875570 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
49875635 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
49875655 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
49875720 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
49875740 CCCATGCTC
1 CCCATGCTC
49875749 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:49891334 original size:7 final size:7
Alignment explanation
Indices: 49891322--49891465 Score: 59
Period size: 7 Copynumber: 21.0 Consensus size: 7
49891312 TGCATGGATC
49891322 AGGGTTT
1 AGGGTTT
49891329 AGGGTTT
1 AGGGTTT
**
49891336 AGAATTT
1 AGGGTTT
* *
49891343 A-GATTG
1 AGGGTTT
*
49891349 AAGGTTT
1 AGGGTTT
49891356 AGGG--T
1 AGGGTTT
*
49891361 ATGGTTT
1 AGGGTTT
* *
49891368 TGAGTTT
1 AGGGTTT
*
49891375 AGGATTT
1 AGGGTTT
*
49891382 A-GTTTAT
1 AGGGTT-T
*
49891389 AGGGGTT
1 AGGGTTT
*
49891396 AAGGTTT
1 AGGGTTT
**
49891403 AAAGTTT
1 AGGGTTT
49891410 AGGGTATT
1 AGGGT-TT
49891418 A-GGTTT
1 AGGGTTT
49891424 AGGGTTT
1 AGGGTTT
* *
49891431 TGAGTATT
1 AGGGT-TT
49891439 -GGGTTT
1 AGGGTTT
49891445 AGGGTATT
1 AGGGT-TT
49891453 A-GGTTT
1 AGGGTTT
49891459 AGGGTTT
1 AGGGTTT
49891466 GGTCTATTGG
Statistics
Matches: 101, Mismatches: 25, Indels: 22
0.68 0.17 0.15
Matches are distributed among these distances:
5 4 0.04
6 15 0.15
7 72 0.71
8 10 0.10
ACGTcount: A:0.22, C:0.00, G:0.34, T:0.44
Consensus pattern (7 bp):
AGGGTTT
Found at i:49891427 original size:35 final size:36
Alignment explanation
Indices: 49891370--49891462 Score: 86
Period size: 35 Copynumber: 2.6 Consensus size: 36
49891360 TATGGTTTTG
* *
49891370 AGTTTAGGAT-TTAGTTTATAGGGGTTAAG-GT-TTAA
1 AGTTTAGGGTATTAGGTT-TAGGGGTTAAGAGTATT-A
** *
49891405 AGTTTAGGGTATTAGGTTTA-GGGTTTTGAGTATTG
1 AGTTTAGGGTATTAGGTTTAGGGGTTAAGAGTATTA
*
49891440 GGTTTAGGGTATTAGGTTTAGGG
1 AGTTTAGGGTATTAGGTTTAGGG
49891463 TTTGGTCTAT
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
34 6 0.12
35 32 0.67
36 10 0.21
ACGTcount: A:0.23, C:0.00, G:0.34, T:0.43
Consensus pattern (36 bp):
AGTTTAGGGTATTAGGTTTAGGGGTTAAGAGTATTA
Found at i:49891463 original size:35 final size:34
Alignment explanation
Indices: 49891406--49891482 Score: 118
Period size: 35 Copynumber: 2.2 Consensus size: 34
49891396 AAGGTTTAAA
* *
49891406 GTTTAGGGTATTAGGTTTAGGGTTTTGAGTATTGG
1 GTTTAGGGTATTAGGTTTAGGGTTTGGACTATT-G
*
49891441 GTTTAGGGTATTAGGTTTAGGGTTTGGTCTATTG
1 GTTTAGGGTATTAGGTTTAGGGTTTGGACTATTG
49891475 GTTTAGGG
1 GTTTAGGG
49891483 CTTAATTATA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
34 9 0.23
35 30 0.77
ACGTcount: A:0.16, C:0.01, G:0.38, T:0.45
Consensus pattern (34 bp):
GTTTAGGGTATTAGGTTTAGGGTTTGGACTATTG
Found at i:49891877 original size:123 final size:122
Alignment explanation
Indices: 49891680--49891949 Score: 373
Period size: 123 Copynumber: 2.2 Consensus size: 122
49891670 AAAATTTCGC
* * *
49891680 AAAAA-ATGATAAATTGAATGAAAACGACGTTGTTTTAGTTGGTGGGTAGTGGAATTAGTGGCGC
1 AAAAATATGAGAAATTGAATGGAAACGACGTTGTTTTAGTTGGGGGGTAGTGGAATTAGTGGCGC
* * * *
49891744 TAGGCAATAAACGCCGCAATAGATCAGAATTGGAGGTGCTTATTAGAAAATGCCGCT
66 TAGGCAATAAACGCAGCAATAGATCAGAATTAGAGGAGCTTATTAGAAAATGCCACT
*
49891801 AAAAATATGAGAAATTGAATGGAAACGGC-TTCGTTTTAGTTGGCGGGGTAGTGGAATTAGTGGC
1 AAAAATATGAGAAATTGAATGGAAACGACGTT-GTTTTAGTTGG-GGGGTAGTGGAATTAGTGGC
* * * * * *
49891865 GTTATGTAATAAATGCAGCAATAGATCAGCATTAGCGGAGCTTATTAGAAAATGCCACT
64 GCTAGGCAATAAACGCAGCAATAGATCAGAATTAGAGGAGCTTATTAGAAAATGCCACT
*
49891924 AAAAATATGAGAAGTTGAATGGAAAC
1 AAAAATATGAGAAATTGAATGGAAAC
49891950 AGCGTTATTT
Statistics
Matches: 131, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
121 7 0.05
122 31 0.24
123 93 0.71
ACGTcount: A:0.36, C:0.11, G:0.27, T:0.26
Consensus pattern (122 bp):
AAAAATATGAGAAATTGAATGGAAACGACGTTGTTTTAGTTGGGGGGTAGTGGAATTAGTGGCGC
TAGGCAATAAACGCAGCAATAGATCAGAATTAGAGGAGCTTATTAGAAAATGCCACT
Found at i:49891980 original size:123 final size:123
Alignment explanation
Indices: 49891712--49891994 Score: 349
Period size: 123 Copynumber: 2.3 Consensus size: 123
49891702 AACGACGTTG
* * * * *
49891712 TTTTAGTTGGTG-GGTAGTGGAATTAGTGGCGCTAGGCAATAAACGCCGCAATAGATCAGAATTG
1 TTTTAGTTGGCGCGGTAGTGGAATTAGTGGCGCTATGTAATAAACGCAGCAATAGATCAGAATTA
* * * *
49891776 GAGGTGCTTATTAGAAAATGCCGCTAAAAATATGAGAAATTGAATGGAAACGGCTTCG
66 GAGGAGCTTATTAGAAAATGCCACTAAAAATATGAGAAATTGAATGGAAACAGCTTCA
* * * *
49891834 TTTTAGTTGGCGGGGTAGTGGAATTAGTGGCGTTATGTAATAAATGCAGCAATAGATCAGCATTA
1 TTTTAGTTGGCGCGGTAGTGGAATTAGTGGCGCTATGTAATAAACGCAGCAATAGATCAGAATTA
* *
49891899 GCGGAGCTTATTAGAAAATGCCACTAAAAATATGAGAAGTTGAATGGAAACAGCGTT-A
66 GAGGAGCTTATTAGAAAATGCCACTAAAAATATGAGAAATTGAATGGAAACAGC-TTCA
* * *
49891957 TTTTA-TGTGGCTCGGT-TTAGGAATTAGCGGCGCTATGT
1 TTTTAGT-TGGCGCGGTAGT-GGAATTAGTGGCGCTATGT
49891995 TGGAAACGCT
Statistics
Matches: 138, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
122 13 0.09
123 123 0.89
124 2 0.01
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.29
Consensus pattern (123 bp):
TTTTAGTTGGCGCGGTAGTGGAATTAGTGGCGCTATGTAATAAACGCAGCAATAGATCAGAATTA
GAGGAGCTTATTAGAAAATGCCACTAAAAATATGAGAAATTGAATGGAAACAGCTTCA
Found at i:49892019 original size:123 final size:123
Alignment explanation
Indices: 49891712--49892043 Score: 298
Period size: 123 Copynumber: 2.7 Consensus size: 123
49891702 AACGACGTTG
* * * * * * * * * *
49891712 TTTTAGTTGGTG-GGTAGTGGAATTAGTGGCGCTAGGCAATAAACGCCGCAATAGATCAGAATTG
1 TTTTAGTTGGCGCGGTAGTGGAATTAGCGGCGCTATGTAAGAAACGCAGCAAAAAATCAGCATTA
** * * * *
49891776 GAGGTGCTTATTAGAAAATGCCGCTAAAAATATGAGAAATTGAATGGAAACGGCTTCG
66 CTGGAGCTTATTAGAAAATGCCACTAAAAATATGAGAAATTGAATGGAAACAGCTTCA
* * * * * * *
49891834 TTTTAGTTGGCGGGGTAGTGGAATTAGTGGCGTTATGTAATAAATGCAGCAATAGATCAGCATTA
1 TTTTAGTTGGCGCGGTAGTGGAATTAGCGGCGCTATGTAAGAAACGCAGCAAAAAATCAGCATTA
*
49891899 GC-GGAGCTTATTAGAAAATGCCACTAAAAATATGAGAAGTTGAATGGAAACAGCGTT-A
66 -CTGGAGCTTATTAGAAAATGCCACTAAAAATATGAGAAATTGAATGGAAACAGC-TTCA
* * ** * *
49891957 TTTTA-TGTGGCTCGGT-TTAGGAATTAGCGGCGCTATGTTGGAAACGCTGCAAAAAATTAGCAT
1 TTTTAGT-TGGCGCGGTAGT-GGAATTAGCGGCGCTATGTAAGAAACGCAGCAAAAAATCAGCAT
*
49892020 TACTGGTGCTTATTCA-AAAATGCC
64 TACTGGAGCTTATT-AGAAAATGCC
49892044 GCAAATGTCA
Statistics
Matches: 175, Mismatches: 28, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
122 14 0.08
123 158 0.90
124 3 0.02
ACGTcount: A:0.32, C:0.13, G:0.27, T:0.28
Consensus pattern (123 bp):
TTTTAGTTGGCGCGGTAGTGGAATTAGCGGCGCTATGTAAGAAACGCAGCAAAAAATCAGCATTA
CTGGAGCTTATTAGAAAATGCCACTAAAAATATGAGAAATTGAATGGAAACAGCTTCA
Found at i:49893336 original size:5 final size:5
Alignment explanation
Indices: 49893326--49893356 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
49893316 ATTTTGTCCT
49893326 TATAC TATAC TATAC TATAC TATAC TATAC T
1 TATAC TATAC TATAC TATAC TATAC TATAC T
49893357 GCATCAAACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.42
Consensus pattern (5 bp):
TATAC
Found at i:49894850 original size:13 final size:14
Alignment explanation
Indices: 49894832--49894864 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
49894822 ATTAAATAAA
*
49894832 TTATTTTAAA-GTT
1 TTATTTTAAATATT
49894845 TTATTTTAAATATT
1 TTATTTTAAATATT
49894859 TTATTT
1 TTATTT
49894865 ATTTTATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (14 bp):
TTATTTTAAATATT
Found at i:49895028 original size:103 final size:104
Alignment explanation
Indices: 49894691--49895044 Score: 565
Period size: 101 Copynumber: 3.4 Consensus size: 104
49894681 TTTTTAAATA
*
49894691 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATAGTA-TTAAAGTTTTATTTTGAATGTTA
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTT-AA--TTA
*
49894755 TTTTATTTTATTTTATTTTAATCACGAAAAATATTTGTCTAC
63 TTTTATTTTATTTTATTTTAATCACGAAAAATATTTTTCTAC
* *
49894797 TTTTATTTTATTTTTAAATTACCTAATTAAA-TAAATTAT-TTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAATTATTT
*
49894860 TA-TTTATTTTATTTTAATCACTAAAAATATTTTTCTAC
66 TATTTTATTTTATTTTAATCACGAAAAATATTTTTCTAC
49894898 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAATTATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAATTATTT
* *
49894963 TATTTTATTTTAATTTAATCACGAAAAATATTTTTTTAC
66 TATTTTATTTTATTTTAATCACGAAAAATATTTTTCTAC
**
49895002 TTTTATTTTATTGGT-AATTACCTAATTAAATTAAATTGTATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTT
49895045 TAATTATTTT
Statistics
Matches: 232, Mismatches: 12, Indels: 11
0.91 0.05 0.04
Matches are distributed among these distances:
101 65 0.28
102 14 0.06
103 53 0.23
104 48 0.21
105 21 0.09
106 31 0.13
ACGTcount: A:0.34, C:0.05, G:0.04, T:0.56
Consensus pattern (104 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAATTATTT
TATTTTATTTTATTTTAATCACGAAAAATATTTTTCTAC
Found at i:49895340 original size:18 final size:18
Alignment explanation
Indices: 49895308--49895394 Score: 71
Period size: 18 Copynumber: 5.2 Consensus size: 18
49895298 CAACATAAAT
*
49895308 ATATATCATATCTTACATA
1 ATATA-CATAACTTACATA
*
49895327 ATTTACATAACTTACA-A
1 ATATACATAACTTACATA
*
49895344 A-ATACATAA---ATAT-
1 ATATACATAACTTACATA
*
49895357 ATAT-CATATCTTACATA
1 ATATACATAACTTACATA
*
49895374 ATTTACATAACTTACATA
1 ATATACATAACTTACATA
49895392 ATA
1 ATA
49895395 CATAAATATA
Statistics
Matches: 52, Mismatches: 9, Indels: 15
0.68 0.12 0.20
Matches are distributed among these distances:
13 7 0.13
14 2 0.04
16 10 0.19
17 5 0.10
18 24 0.46
19 4 0.08
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (18 bp):
ATATACATAACTTACATA
Found at i:49895369 original size:47 final size:47
Alignment explanation
Indices: 49895300--49895413 Score: 219
Period size: 47 Copynumber: 2.4 Consensus size: 47
49895290 AATCCCATCA
49895300 ACATAAATATATATCATATCTTACATAATTTACATAACTTACAAAAT
1 ACATAAATATATATCATATCTTACATAATTTACATAACTTACAAAAT
*
49895347 ACATAAATATATATCATATCTTACATAATTTACATAACTTACATAAT
1 ACATAAATATATATCATATCTTACATAATTTACATAACTTACAAAAT
49895394 ACATAAATATATATCATATC
1 ACATAAATATATATCATATC
49895414 ATACTTACAT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.37
Consensus pattern (47 bp):
ACATAAATATATATCATATCTTACATAATTTACATAACTTACAAAAT
Found at i:49895392 original size:9 final size:9
Alignment explanation
Indices: 49895314--49895429 Score: 55
Period size: 9 Copynumber: 13.0 Consensus size: 9
49895304 AAATATATAT
*
49895314 CATATCTTA
1 CATAACTTA
*
49895323 CATAATTTA
1 CATAACTTA
49895332 CATAACTTA
1 CATAACTTA
*
49895341 CA-AA-ATA
1 CATAACTTA
*
49895348 CATAAATATATA
1 CAT-AA-CT-TA
*
49895360 TCATATCTTA
1 -CATAACTTA
*
49895370 CATAATTTA
1 CATAACTTA
49895379 CATAACTTA
1 CATAACTTA
49895388 CATAA--TA
1 CATAACTTA
*
49895395 CATAA-ATA
1 CATAACTTA
* * *
49895403 TATATCATA
1 CATAACTTA
49895412 TCAT-ACTTA
1 -CATAACTTA
49895421 CATAACTTA
1 CATAACTTA
49895430 ATTATACTTA
Statistics
Matches: 82, Mismatches: 15, Indels: 20
0.70 0.13 0.17
Matches are distributed among these distances:
7 11 0.13
8 10 0.12
9 50 0.61
10 4 0.05
11 1 0.01
12 3 0.04
13 3 0.04
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (9 bp):
CATAACTTA
Found at i:49902156 original size:27 final size:27
Alignment explanation
Indices: 49902126--49902190 Score: 112
Period size: 27 Copynumber: 2.4 Consensus size: 27
49902116 ACCCATGGTT
49902126 TGTAAAATTACTGAAATACCCTCGACC
1 TGTAAAATTACTGAAATACCCTCGACC
* *
49902153 TGTAAAATTATTGAAATACCCTCGACT
1 TGTAAAATTACTGAAATACCCTCGACC
49902180 TGTAAAATTAC
1 TGTAAAATTAC
49902191 CAAAGTACCC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (27 bp):
TGTAAAATTACTGAAATACCCTCGACC
Found at i:49902199 original size:27 final size:26
Alignment explanation
Indices: 49902103--49902200 Score: 90
Period size: 27 Copynumber: 3.6 Consensus size: 26
49902093 TTAGTTTACC
**
49902103 AAATTACCAAAATACCCAT-GGTTTGTA
1 AAATTACC-AAATACCC-TCGACTTGTA
* *
49902130 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTAC-CAAATACCCTCGACTTGTA
**
49902157 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTA-CCAAATACCCTCGACTTGTA
49902184 AAATTACCAAAGTACCC
1 AAATTACCAAA-TACCC
49902201 CTAATTTACA
Statistics
Matches: 59, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
26 4 0.07
27 55 0.93
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (26 bp):
AAATTACCAAATACCCTCGACTTGTA
Found at i:49902276 original size:26 final size:27
Alignment explanation
Indices: 49902239--49902691 Score: 420
Period size: 26 Copynumber: 17.2 Consensus size: 27
49902229 CAATTTATAA
* *
49902239 AATTACCGAAATAACCCTGTAGGGAAG
1 AATTACTGAAATAACCCTGTAGGGTAG
* *
49902266 AA-TATTGAAAT-ACCCTTTAGGGTAG
1 AATTACTGAAATAACCCTGTAGGGTAG
* * * *
49902291 AAATACCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATAACCCTGTAGGGTAG
* * * *
49902318 AATTACTAAAATACCCCTGTAAGCTAG
1 AATTACTGAAATAACCCTGTAGGGTAG
49902345 AATTACTGAAAT-ACCCT-TGAGGGTAG
1 AATTACTGAAATAACCCTGT-AGGGTAG
* *
49902371 AAATAC-GAAATACCCCTGTAGGGTAG
1 AATTACTGAAATAACCCTGTAGGGTAG
* *
49902397 AATTACT-AAAAAACCCCTATA-GGTAG
1 AATTACTGAAATAA-CCCTGTAGGGTAG
* *
49902423 AATTA-TCGAAATATCCTTGTAGGGT-G
1 AATTACT-GAAATAACCCTGTAGGGTAG
* *
49902449 AAATACTGAAATACCCCTGTAGGGT-G
1 AATTACTGAAATAACCCTGTAGGGTAG
*
49902475 AATTACTAAAAT-ACCCTGTAGGGTAG
1 AATTACTGAAATAACCCTGTAGGGTAG
*
49902501 AATTACCGAAAT-ACCCTTGTAGGGTAG
1 AATTACTGAAATAACCC-TGTAGGGTAG
* *
49902528 AAATACCGAAAT-ACCCTGTAGGGTAG
1 AATTACTGAAATAACCCTGTAGGGTAG
*
49902554 AATTACTGAAATACCCCTGTA-GGTAG
1 AATTACTGAAATAACCCTGTAGGGTAG
* *
49902580 AATTACCGAAAT-ACCTTGTAGGGTAG
1 AATTACTGAAATAACCCTGTAGGGTAG
* * *
49902606 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATAACCCTGTAGGGTAG
*
49902633 AATTACTGAAAT-ACCCTTGTAGGGTAA
1 AATTACTGAAATAACCC-TGTAGGGTAG
* * *
49902660 AATTACCGAGAT-ACCCTTGT-GGGTAA
1 AATTACTGAAATAACCC-TGTAGGGTAG
49902686 AATTAC
1 AATTAC
49902692 CATTTTACCC
Statistics
Matches: 357, Mismatches: 52, Indels: 35
0.80 0.12 0.08
Matches are distributed among these distances:
25 38 0.11
26 177 0.50
27 142 0.40
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACTGAAATAACCCTGTAGGGTAG
Found at i:49902322 original size:79 final size:81
Alignment explanation
Indices: 49902239--49902688 Score: 606
Period size: 79 Copynumber: 5.7 Consensus size: 81
49902229 CAATTTATAA
* * **
49902239 AATTACCGAAATAACCCTGTAGGGAAGAA-TATTGAAATACCCTT-TAGGGTAGAAATACCGAAA
1 AATTACTGAAATAACCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
*
49902302 TACCCCTATAGGGTAG
66 TACCCCTGTAGGGTAG
* * * * *
49902318 AATTACTAAAATACCCCTGTAAGCTAGAATTACTGAAATACCCTTG-AGGGTAGAAATA-CGAAA
1 AATTACTGAAATAACCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
49902381 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * * *
49902397 AATTACT-AAAAAACCCCTATA-GGTAGAATTATCGAAATATCCTTGTAGGGT-GAAATACTGAA
1 AATTACTGAAATAA-CCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAA
49902459 ATACCCCTGTAGGGT-G
65 ATACCCCTGTAGGGTAG
*
49902475 AATTACTAAAAT-ACCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
1 AATTACTGAAATAACCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
49902539 TA-CCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
*
49902554 AATTACTGAAATACCCCTGTA-GGTAGAATTACCGAAATA-CCTTGTAGGGTAGAAATACCGAAA
1 AATTACTGAAATAACCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
49902617 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* *
49902633 AATTACTGAAAT-ACCCTTGTAGGGTAAAATTACCGAGATACCCTTGT-GGGTA-AAAT
1 AATTACTGAAATAACCC-TGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAAT
49902689 TACCATTTTA
Statistics
Matches: 331, Mismatches: 26, Indels: 28
0.86 0.07 0.07
Matches are distributed among these distances:
77 6 0.02
78 107 0.32
79 158 0.48
80 54 0.16
81 6 0.02
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (81 bp):
AATTACTGAAATAACCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
TACCCCTGTAGGGTAG
Found at i:49902473 original size:105 final size:107
Alignment explanation
Indices: 49902246--49902688 Score: 487
Period size: 105 Copynumber: 4.2 Consensus size: 107
49902236 TAAAATTACC
* * ** *
49902246 GAAATAACCCTGTAGGGAAG-AATATTGAAATACCCTTTAGGGTAGAAATACCGAAATACCCCTA
1 GAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTGTAGGGTAGAAATACCGAAATACCCCTA
* * * *
49902310 TAGGGTAGAATTACTAAAATACCCCTGTAAGCTAGAATTACT
66 TAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAAATACT
* * ** *
49902352 GAAATACCCTTG-AGGGTAGAAATA-CGAAATACCCCTGTAGGGTAGAATTACTAAAAAACCCCT
1 GAAATACCCCTGTAGGGTAGAAATACCGAAATA-CCCTGTAGGGTAGAAATACCGAAATACCCCT
* *
49902415 ATA-GGTAGAATTA-TCGAAATATCCTTGTAGGGT-GAAATACT
65 ATAGGGTAGAATTACT-GAAATACCCCTGTAGGGTAGAAATACT
* ** * * *
49902456 GAAATACCCCTGTAGGGT-GAATTACTAAAATACCCTGTAGGGTAGAATTACCGAAATACCCTTG
1 GAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTGTAGGGTAGAAATACCGAAATACCCCTA
* * *
49902520 TAGGGTAGAAATACCGAAATA-CCCTGTAGGGTAGAATTACT
66 TAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAAATACT
* * *
49902561 GAAATACCCCTGTA-GGTAGAATTACCGAAATACCTTGTAGGGTAGAAATACCGAAATACCCCTG
1 GAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTGTAGGGTAGAAATACCGAAATACCCCTA
* *
49902625 TAGGGTAGAATTACTGAAATACCCTTGTAGGGTA-AAATTACC
66 TAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAAA-TACT
* *
49902667 GAGATACCCTTGT-GGGTA-AAAT
1 GAAATACCCCTGTAGGGTAGAAAT
49902689 TACCATTTTA
Statistics
Matches: 284, Mismatches: 41, Indels: 25
0.81 0.12 0.07
Matches are distributed among these distances:
104 66 0.23
105 146 0.51
106 72 0.25
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.25
Consensus pattern (107 bp):
GAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTGTAGGGTAGAAATACCGAAATACCCCTA
TAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAAATACT
Found at i:49903113 original size:6 final size:6
Alignment explanation
Indices: 49903104--49903296 Score: 92
Period size: 6 Copynumber: 31.3 Consensus size: 6
49903094 TTGCATTCAC
* * * *
49903104 ATTCTG ATTCTA ATTCTG -TTACCTG ATACCG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* ** *
49903154 ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG -TTACCTG ACACTG ATTCTA
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * * * * *
49903203 ATTCT- CTTACCTA ATTCTA ATTTTG ATTTTG ATTTTG ATTCTG -TCACTTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT-TC-TG
* *
49903253 ATTCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
49903297 AATGTTTCTT
Statistics
Matches: 144, Mismatches: 26, Indels: 34
0.71 0.13 0.17
Matches are distributed among these distances:
5 10 0.07
6 114 0.79
7 14 0.10
8 6 0.04
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:49903162 original size:25 final size:25
Alignment explanation
Indices: 49903104--49903171 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
49903094 TTGCATTCAC
* *
49903104 ATTCTGATTCTAATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTTACCTA
* *
49903129 ATACCGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTTACCTA
*
49903154 ATTCTGATTCTGGTTCTG
1 ATTCTGATTCTGATTCTG
49903172 ATTCTGATTC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACCTA
Found at i:49903197 original size:19 final size:19
Alignment explanation
Indices: 49903130--49903201 Score: 87
Period size: 19 Copynumber: 3.9 Consensus size: 19
49903120 TGTTACCTGA
49903130 TACC-GATTCTGATTCTGT
1 TACCTGATTCTGATTCTGT
*
49903148 TACCTAATTCTGATTCTGGT
1 TACCTGATTCTGATTCT-GT
49903168 T--CTGATTCTGATTCTGT
1 TACCTGATTCTGATTCTGT
**
49903185 TACCTGACACTGATTCT
1 TACCTGATTCTGATTCT
49903202 AATTCTCTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
17 3 0.07
18 17 0.37
19 23 0.50
20 3 0.07
ACGTcount: A:0.18, C:0.22, G:0.15, T:0.44
Consensus pattern (19 bp):
TACCTGATTCTGATTCTGT
Found at i:49903207 original size:62 final size:62
Alignment explanation
Indices: 49903105--49903296 Score: 217
Period size: 62 Copynumber: 3.1 Consensus size: 62
49903095 TGCATTCACA
* *
49903105 TTCTGATTCTAATTCTGTTACCTGATACCGATTCTGATTCTGTTACCTAATTCTGATTCTGG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
* * * * * *
49903167 TTCTGATTCTGATTCTGTTACCTGACACTGATTCTAATTCTCTTACCTAATTCTAATTTTGA
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
* * * * * * * *
49903229 TTTTGATTTTGATTCTGTCACTTGATTCTGATTCTGATTCTGATT--CTCATTTTGATTCTAG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTG-TTACCTAATTCTGATTCTGG
49903290 TTCTGAT
1 TTCTGAT
49903297 AATGTTTCTT
Statistics
Matches: 106, Mismatches: 23, Indels: 3
0.80 0.17 0.02
Matches are distributed among these distances:
61 16 0.15
62 88 0.83
63 2 0.02
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49
Consensus pattern (62 bp):
TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGG
Found at i:49905453 original size:40 final size:40
Alignment explanation
Indices: 49905397--49905559 Score: 197
Period size: 40 Copynumber: 4.1 Consensus size: 40
49905387 TTGATGATTA
* * *
49905397 CCGGGCTAAGTACCGAAGGCATTTGCGCTA-TTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT-ACTA-TAT
49905437 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
49905477 CCGGGTTATGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
49905517 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
49905557 CCG
1 CCG
49905560 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.03
40 106 0.95
41 2 0.02
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:49913482 original size:40 final size:40
Alignment explanation
Indices: 49913427--49913684 Score: 403
Period size: 40 Copynumber: 6.5 Consensus size: 40
49913417 TGGATGATAA
49913427 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
49913467 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
49913507 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
49913547 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
49913587 CCGGGCTAAGTCTCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
49913627 CCGGGCTATGTCCCGAAGGCATTCGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
49913667 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
49913685 TACTTGGCTT
Statistics
Matches: 203, Mismatches: 14, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
39 15 0.07
40 188 0.93
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:49922487 original size:40 final size:40
Alignment explanation
Indices: 49922429--49922589 Score: 270
Period size: 40 Copynumber: 4.0 Consensus size: 40
49922419 CGGATGATAA
*
49922429 CCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
49922469 CCGGGCTAAGACGCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
49922509 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
49922549 CCGGGCTAGGACCCGAAGG-ATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
49922588 CC
1 CC
49922590 AGCTAAATCC
Statistics
Matches: 114, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 20 0.18
40 94 0.82
ACGTcount: A:0.21, C:0.21, G:0.32, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:49922873 original size:22 final size:22
Alignment explanation
Indices: 49922831--49922874 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
49922821 AAAATGTGCA
* *
49922831 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
49922853 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
49922875 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:49928178 original size:31 final size:32
Alignment explanation
Indices: 49928121--49928182 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
49928111 ACAAAGTCAC
* *
49928121 CAGATATAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATAGATATTGTGGCGAAGCCACCAGAA
*
49928153 CAGATATATATA-TGTGGCGAAGCCACCAGA
1 CAGATATAGATATTGTGGCGAAGCCACCAGA
49928183 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.21
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCGAAGCCACCAGAA
Found at i:49928237 original size:27 final size:26
Alignment explanation
Indices: 49928199--49928249 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
49928189 CGAGGCTGTT
*
49928199 AGATATTGTGGCGAAGTCACCAGAAC
1 AGATATTGTGGCGAAGCCACCAGAAC
*
49928225 AGATATGTGTGGCGAGGCCACCAGA
1 AGATAT-TGTGGCGAAGCCACCAGA
49928250 TTGCAGCAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.31, C:0.20, G:0.31, T:0.18
Consensus pattern (26 bp):
AGATATTGTGGCGAAGCCACCAGAAC
Found at i:49928262 original size:67 final size:68
Alignment explanation
Indices: 49928127--49928262 Score: 184
Period size: 67 Copynumber: 2.0 Consensus size: 68
49928117 TCACCAGATA
* * *
49928127 TAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGCAGCGA
1 TAGATATTGTGGCGAAGCCACCAGAACAG--A-ATATATGTGGCGAAGCCACCAGATTGCAGCAA
49928192 GGCTGT
63 GGCTGT
* * *
49928198 TAGATATTGTGGCGAAGTCACCAGAACAG-ATATGTGTGGCGAGGCCACCAGATTGCAGCAAGGC
1 TAGATATTGTGGCGAAGCCACCAGAACAGAATATATGTGGCGAAGCCACCAGATTGCAGCAAGGC
49928262 T
66 T
49928263 TCCAGAACAC
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
67 33 0.56
71 26 0.44
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.21
Consensus pattern (68 bp):
TAGATATTGTGGCGAAGCCACCAGAACAGAATATATGTGGCGAAGCCACCAGATTGCAGCAAGGC
TGT
Found at i:49933251 original size:12 final size:12
Alignment explanation
Indices: 49933234--49933268 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
49933224 TCTTTTGAAG
49933234 ATTTCTTTTCTC
1 ATTTCTTTTCTC
*
49933246 ATTTCTTTTCTT
1 ATTTCTTTTCTC
*
49933258 GTTTCTTTTCT
1 ATTTCTTTTCT
49933269 GTTGGCACAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.06, C:0.20, G:0.03, T:0.71
Consensus pattern (12 bp):
ATTTCTTTTCTC
Found at i:49935633 original size:43 final size:43
Alignment explanation
Indices: 49935584--49935666 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
49935574 ACATGTATCA
* ** *
49935584 CATCCATTATAAACTTGGACCACTCAATGAGCTCGGATGCTCG
1 CATCCATAATAAACTCAGACCACTCAACGAGCTCGGATGCTCG
*
49935627 CATCCATAATGAACTCAGACCACTCAACGAGCTCGGATGC
1 CATCCATAATAAACTCAGACCACTCAACGAGCTCGGATGC
49935667 CACATATATC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (43 bp):
CATCCATAATAAACTCAGACCACTCAACGAGCTCGGATGCTCG
Found at i:49935696 original size:42 final size:43
Alignment explanation
Indices: 49935601--49935699 Score: 128
Period size: 42 Copynumber: 2.3 Consensus size: 43
49935591 TATAAACTTG
* * * * *
49935601 GACCACTCAATGAGCTCGGATGCTCGCATCCATAATGAACTCA
1 GACCACTCAACGAGCTCGGATGCTCACATACATAACGAACCCA
* *
49935644 GACCACTCAACGAGCTCGGATGC-CACATATATCACGAACCCA
1 GACCACTCAACGAGCTCGGATGCTCACATACATAACGAACCCA
49935686 GACCACTCAACGAG
1 GACCACTCAACGAG
49935700 TTTAGACTTC
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 27 0.55
43 22 0.45
ACGTcount: A:0.32, C:0.33, G:0.18, T:0.16
Consensus pattern (43 bp):
GACCACTCAACGAGCTCGGATGCTCACATACATAACGAACCCA
Found at i:49938453 original size:5 final size:5
Alignment explanation
Indices: 49938443--49938483 Score: 64
Period size: 5 Copynumber: 8.0 Consensus size: 5
49938433 GTGACATAAA
*
49938443 ATATG ATATG ATATG ATATG ATATG ATATG TATAAG ATATG
1 ATATG ATATG ATATG ATATG ATATG ATATG -ATATG ATATG
49938484 TCCCGAGATG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
5 29 0.88
6 4 0.12
ACGTcount: A:0.41, C:0.00, G:0.20, T:0.39
Consensus pattern (5 bp):
ATATG
Found at i:49939479 original size:26 final size:26
Alignment explanation
Indices: 49939440--49939495 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
49939430 CTAAACCTTA
*
49939440 AAAATCTAACAAAACAATAAAATCCT
1 AAAATCTAACAAAACAATAAAACCCT
** * *
49939466 AAAATCTAGTAAAATAATGAAACCCT
1 AAAATCTAACAAAACAATAAAACCCT
49939492 AAAA
1 AAAA
49939496 AGCCAACAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.61, C:0.16, G:0.04, T:0.20
Consensus pattern (26 bp):
AAAATCTAACAAAACAATAAAACCCT
Found at i:49943052 original size:25 final size:25
Alignment explanation
Indices: 49943024--49943077 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
49943014 TGTTAAAATC
49943024 TTCATCACTAAGAGGCAGGAAAGCG
1 TTCATCACTAAGAGGCAGGAAAGCG
49943049 TTCATCACTAAGAGGCAGGAAAGCG
1 TTCATCACTAAGAGGCAGGAAAGCG
49943074 TTCA
1 TTCA
49943078 AGGGTAAGCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.19
Consensus pattern (25 bp):
TTCATCACTAAGAGGCAGGAAAGCG
Found at i:49946068 original size:15 final size:15
Alignment explanation
Indices: 49946048--49946077 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
49946038 GAATTGGTGT
*
49946048 TGTTAAGTTTTGGGA
1 TGTTAAATTTTGGGA
49946063 TGTTAAATTTTGGGA
1 TGTTAAATTTTGGGA
49946078 GGGTTAGAGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (15 bp):
TGTTAAATTTTGGGA
Found at i:49946161 original size:25 final size:25
Alignment explanation
Indices: 49946096--49946163 Score: 84
Period size: 25 Copynumber: 2.7 Consensus size: 25
49946086 GGCGCCATCT
*
49946096 GTGAAATCAATTGAAATGCTGCGTG
1 GTGAAATCAATTGAAACGCTGCGTG
** *
49946121 GTGAAGA-CAAGCGAAACGTTGCGTG
1 GTGAA-ATCAATTGAAACGCTGCGTG
49946146 GTGAAATCAATTGAAACG
1 GTGAAATCAATTGAAACG
49946164 GTGAGTTTTG
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
24 1 0.03
25 33 0.94
26 1 0.03
ACGTcount: A:0.35, C:0.13, G:0.29, T:0.22
Consensus pattern (25 bp):
GTGAAATCAATTGAAACGCTGCGTG
Found at i:49954610 original size:45 final size:45
Alignment explanation
Indices: 49954553--49954682 Score: 208
Period size: 45 Copynumber: 2.9 Consensus size: 45
49954543 TATTATCATT
49954553 TCACCGGCATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
* *
49954598 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
49954643 TCAACGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
49954683 TAATACCAGC
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
44 3 0.04
45 76 0.96
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Done.