Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 154 of 333
Found at i:50441116 original size:80 final size:79
Alignment explanation
Indices: 50440924--50441173 Score: 329
Period size: 80 Copynumber: 3.1 Consensus size: 79
50440914 CTCGAGTTAC
* * * *
50440924 AAAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAATTACCGA
1 AAAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCG-
*
50440989 AATACCCCTGTAGTGT
65 AATA-CCCTGTAGGGT
* * * *
50441005 AGAATTACCGCAATACCCCTGTAGGGTAGAATTACTGCAATACCCCTGTAGGGTAGAATTATCGC
1 AAAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCG-
50441070 AATACCCTGTAGGGT
65 AATACCCTGTAGGGT
* * * *
50441085 ACAATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATATCCCTGTAGGGTGGAATTACCGA
1 AAAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGA
* *
50441150 GATACCTTGTGGGGT
66 -ATACCCTGTAGGGT
50441165 AAAATTACC
1 AAAATTACC
50441174 ATTTTGCCCC
Statistics
Matches: 148, Mismatches: 20, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
79 1 0.01
80 87 0.59
81 60 0.41
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.25
Consensus pattern (79 bp):
AAAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGA
ATACCCTGTAGGGT
Found at i:50441652 original size:22 final size:22
Alignment explanation
Indices: 50441600--50441664 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
50441590 TTAAAGCCTT
* *
50441600 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTATGTGCCAAC
* * *
50441622 CT-ACATATGGCTCTGTACCAAC
1 CTGA-TTATGGCTATGTGCCAAC
50441644 CTGATTATGGCTATGTGCCAA
1 CTGATTATGGCTATGTGCCAA
50441665 TATATGGTTA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTATGTGCCAAC
Found at i:50441826 original size:27 final size:27
Alignment explanation
Indices: 50441796--50441897 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
50441786 ATTCTGTTAA
* *
50441796 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
50441823 GTGGCTATGCCACAAATATCT-TTTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
* *
50441850 GTGGCTCTGCCATAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
50441877 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
50441898 ATAACTGAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 7 0.11
27 52 0.80
28 6 0.09
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.38
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:50442072 original size:6 final size:6
Alignment explanation
Indices: 50442057--50442144 Score: 72
Period size: 6 Copynumber: 14.3 Consensus size: 6
50442047 ATTCTGTTAC
* * * *
50442057 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT CTGACT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* *
50442106 CTGATT CTG-TCAC CTAATT CTGATT CTGATT CTGATT CT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CT
50442145 AGTTCTAATA
Statistics
Matches: 65, Mismatches: 11, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
5 3 0.05
6 55 0.85
7 5 0.08
8 2 0.03
ACGTcount: A:0.19, C:0.20, G:0.15, T:0.45
Consensus pattern (6 bp):
CTGATT
Found at i:50442085 original size:31 final size:31
Alignment explanation
Indices: 50442047--50442144 Score: 151
Period size: 31 Copynumber: 3.2 Consensus size: 31
50442037 CTGATTTTTT
*
50442047 ATTCTGTTACCTGATACTGATTCTGATTTTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
*
50442078 ATTCTGTTACCTGATACTGATTCTGACTCTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
* * *
50442109 ATTCTGTCACCTAATTCTGATTCTGATTCTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
50442140 ATTCT
1 ATTCT
50442145 AGTTCTAATA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.46
Consensus pattern (31 bp):
ATTCTGTTACCTGATACTGATTCTGATTCTG
Found at i:50444117 original size:27 final size:27
Alignment explanation
Indices: 50444087--50444400 Score: 405
Period size: 27 Copynumber: 11.6 Consensus size: 27
50444077 TTAGTTTACC
50444087 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
50444114 AAATCACTAAAAT-CCCCTTGGTTTATA
1 AAATTACCAAAATACCCC-TGGTTTGTA
*
50444141 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
50444168 AAATTACCAAAATACCCTTAGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
50444195 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * ** *
50444222 AATTTACTAAAATACCCTTTCTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
50444249 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
50444276 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
50444303 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
50444330 AAATTACCAAAATACCCCTAGTTTCTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
50444357 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
50444384 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
50444401 TCGACCTATA
Statistics
Matches: 248, Mismatches: 37, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
26 4 0.02
27 240 0.97
28 4 0.02
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:50444453 original size:27 final size:27
Alignment explanation
Indices: 50444087--50444453 Score: 357
Period size: 27 Copynumber: 13.6 Consensus size: 27
50444077 TTAGTTTACC
*
50444087 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * * *
50444114 AAATCACTAAAAT-CCCCTTGGTTTATA
1 AAATTACCAAAATACCCC-TGATTTGTA
* *
50444141 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* **
50444168 AAATTACCAAAATA-CCCTTAGTTTACA
1 AAATTACCAAAATACCCCTGA-TTTGTA
50444195 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * * ** *
50444222 AATTTACTAAAATACCCTTTCTTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
*
50444249 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
50444276 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
50444303 AAATTATCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
*
50444330 AAATTACCAAAATACCCCT-AGTTTCTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
*
50444357 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
** ** *
50444384 AAATTACTGAAATA-CCCTCGACCTATA
1 AAATTACCAAAATACCCCT-GATTTGTA
*** * *
50444411 AAATTATTGAAATACCCTTGACTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* *
50444438 AACTTACCAAAGTACC
1 AAATTACCAAAATACC
50444454 ATTGATTTAC
Statistics
Matches: 286, Mismatches: 46, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
26 12 0.04
27 261 0.91
28 13 0.05
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:50444526 original size:27 final size:27
Alignment explanation
Indices: 50444493--50444615 Score: 167
Period size: 27 Copynumber: 4.6 Consensus size: 27
50444483 CGATTTACAA
*
50444493 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
50444520 AAATACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
50444547 AATTACTGAAATACCCCTGTAGTGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
50444574 AATTATCGTAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
50444601 AATTACC-ACAATACC
1 AATTACCGA-AATACC
50444616 TGTAACACCC
Statistics
Matches: 84, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
27 84 1.00
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:50445425 original size:37 final size:37
Alignment explanation
Indices: 50445375--50445453 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
50445365 TTATTACGAA
* * *
50445375 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
50445412 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
50445449 GTCTT
1 GTCTT
50445454 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:50445643 original size:47 final size:47
Alignment explanation
Indices: 50445572--50446483 Score: 1412
Period size: 47 Copynumber: 19.4 Consensus size: 47
50445562 CCCTTCGGGA
* * * * * *
50445572 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
50445619 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50445666 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50445713 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50445760 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50445809 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50445855 -----C-C-T-TAT-CACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50445893 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50445942 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50445989 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50446036 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50446085 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50446132 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
50446179 CTTATCACATATATATACACTTTCACAGTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50446228 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50446275 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50446322 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50446371 CTTATCACATATATAGACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50446418 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50446465 CTTATCACATATATACACT
1 CTTATCACATATATACACT
50446484 CACATCACAA
Statistics
Matches: 799, Mismatches: 46, Indels: 40
0.90 0.05 0.05
Matches are distributed among these distances:
37 30 0.04
38 3 0.00
39 1 0.00
40 1 0.00
41 1 0.00
43 1 0.00
44 1 0.00
47 543 0.68
48 3 0.00
49 215 0.27
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50445650 original size:25 final size:25
Alignment explanation
Indices: 50445622--50445700 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
50445612 ACTCGGCCCT
50445622 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
50445647 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
50445669 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
50445694 ATCACAT
1 ATCACAT
50445701 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:50445802 original size:96 final size:94
Alignment explanation
Indices: 50445572--50446483 Score: 1412
Period size: 96 Copynumber: 9.7 Consensus size: 94
50445562 CCCTTCGGGA
* * * * * * *
50445572 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
50445637 TTTCACATTCATCACATTGGCCATTCGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
50445666 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
50445731 TTTCACATTCACCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
50445760 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
50445825 ACTTTCACATTCATCACATCGGCTATTAGG-
64 ACTTTCACATTCATCACATCGGCCATTAGGC
50445855 -----C-C-T-TAT-CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
50445911 ACTTTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
50445942 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
50446007 TTTCACATTCACCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
50446036 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
50446101 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
50446132 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* * *
50446197 ACTTTCACAGTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
50446228 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
50446293 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
50446322 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAG
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
50446387 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
50446418 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
50446483 T
66 T
50446484 CACATCACAA
Statistics
Matches: 752, Mismatches: 46, Indels: 40
0.90 0.05 0.05
Matches are distributed among these distances:
84 38 0.05
85 3 0.00
86 36 0.05
89 1 0.00
90 1 0.00
92 1 0.00
93 1 0.00
94 281 0.37
95 3 0.00
96 387 0.51
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:50445828 original size:143 final size:143
Alignment explanation
Indices: 50445572--50446479 Score: 1624
Period size: 143 Copynumber: 6.4 Consensus size: 143
50445562 CCCTTCGGGA
* * * * * * *
50445572 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
50445635 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
*
50445700 TCGGCCATTAGGC
131 TCGGCTATTAGGC
*
50445713 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
50445778 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
50445843 TCGGCTATTAGG-
131 TCGGCTATTAGGC
50445855 -----C-C-T-TAT-CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
50445911 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
50445976 TCGGCTATTAGGC
131 TCGGCTATTAGGC
*
50445989 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
50446054 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
50446119 TCGGCTATTAGGC
131 TCGGCTATTAGGC
50446132 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
50446197 ACTTTCACAGTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
50446262 TCGGCTATTAGGC
131 TCGGCTATTAGGC
50446275 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
50446340 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAGACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
50446405 TCGGCTATTAGGC
131 TCGGCTATTAGGC
50446418 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
50446480 CACTCACATC
Statistics
Matches: 740, Mismatches: 15, Indels: 22
0.95 0.02 0.03
Matches are distributed among these distances:
133 126 0.17
134 3 0.00
135 1 0.00
136 1 0.00
137 1 0.00
139 1 0.00
140 1 0.00
141 48 0.06
142 3 0.00
143 555 0.75
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCTATTAGGC
Found at i:50445865 original size:37 final size:37
Alignment explanation
Indices: 50445824--50445900 Score: 145
Period size: 37 Copynumber: 2.1 Consensus size: 37
50445814 CACATATATA
*
50445824 CACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
50445861 CACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
50445898 CAC
1 CAC
50445901 ATATATATAC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.25, C:0.32, G:0.10, T:0.32
Consensus pattern (37 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
Found at i:50448993 original size:26 final size:27
Alignment explanation
Indices: 50448925--50449055 Score: 140
Period size: 27 Copynumber: 4.9 Consensus size: 27
50448915 GGGGTGTCAC
* * *
50448925 AATACCCCTGTGGGGTAGAATTATCGC
1 AATACCCCTGTAGGGTAGAATTACCGA
*
50448952 AATACCCCTGTAGGGTACAATTACCGA
1 AATACCCCTGTAGGGTAGAATTACCGA
**
50448979 AATA-CCCTGTAGGGTAGAATTACTAA
1 AATACCCCTGTAGGGTAGAATTACCGA
* *
50449005 AATACCCCTATAGGGTGGAATTACCGA
1 AATACCCCTGTAGGGTAGAATTACCGA
* * * *
50449032 GATA-CCTTGTGGGGTAAAATTACC
1 AATACCCCTGTAGGGTAGAATTACC
50449056 ATTTTGCCCC
Statistics
Matches: 86, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
26 38 0.44
27 48 0.56
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAGAATTACCGA
Found at i:50448994 original size:53 final size:53
Alignment explanation
Indices: 50448925--50449054 Score: 154
Period size: 53 Copynumber: 2.4 Consensus size: 53
50448915 GGGGTGTCAC
** *
50448925 AATACCCCTGTGGGGTAGAATTA-TCGCAATACCCCTGTAGGGTACAATTACCGA
1 AATA-CCCTGTGGGGTAGAATTACT-AAAATACCCCTATAGGGTACAATTACCGA
* **
50448979 AATACCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTGGAATTACCGA
1 AATACCCTGTGGGGTAGAATTACTAAAATACCCCTATAGGGTACAATTACCGA
* * *
50449032 GATACCTTGTGGGGTAAAATTAC
1 AATACCCTGTGGGGTAGAATTAC
50449055 CATTTTGCCC
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
53 60 0.92
54 5 0.08
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.25
Consensus pattern (53 bp):
AATACCCTGTGGGGTAGAATTACTAAAATACCCCTATAGGGTACAATTACCGA
Found at i:50449534 original size:22 final size:22
Alignment explanation
Indices: 50449482--50449546 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
50449472 TTAAAGCCTT
* *
50449482 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTATGTGCCAAC
* *
50449504 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTATGTGCCAAC
50449526 CTGATTATGGCTATGTGCCAA
1 CTGATTATGGCTATGTGCCAA
50449547 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTATGTGCCAAC
Found at i:50449735 original size:27 final size:27
Alignment explanation
Indices: 50449712--50449806 Score: 102
Period size: 27 Copynumber: 3.5 Consensus size: 27
50449702 TAAGTGGGTT
*
50449712 TGCCACATTATCTGTTTCTGGTGGCTA
1 TGCCACAATATCTGTTTCTGGTGGCTA
* *
50449739 TGCCACAAATAACTG-TTCTGGTGGCTC
1 TGCCAC-AATATCTGTTTCTGGTGGCTA
* * * *
50449766 TGCCATAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTTTCTGGTGGCTA
*
50449793 TGTCACAATATCTG
1 TGCCACAATATCTG
50449807 ATAACTGAGC
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 7 0.12
27 44 0.77
28 6 0.11
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTTTCTGGTGGCTA
Found at i:50449951 original size:31 final size:31
Alignment explanation
Indices: 50449905--50450003 Score: 135
Period size: 31 Copynumber: 3.2 Consensus size: 31
50449895 TTGCATTCAC
50449905 ATTCTAATTTTTGATTCTGTTACCTGATACTG
1 ATTCTAA-TTTTGATTCTGTTACCTGATACTG
50449937 ATTCTAATTTTGATTCTGTTACCTGATACTG
1 ATTCTAATTTTGATTCTGTTACCTGATACTG
* * * * * *
50449968 ATTCTGATTCTGATTCTATCACCTAATTCTG
1 ATTCTAATTTTGATTCTGTTACCTGATACTG
50449999 ATTCT
1 ATTCT
50450004 GATTCTATTT
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
31 54 0.89
32 7 0.11
ACGTcount: A:0.22, C:0.18, G:0.11, T:0.48
Consensus pattern (31 bp):
ATTCTAATTTTGATTCTGTTACCTGATACTG
Found at i:50449974 original size:6 final size:6
Alignment explanation
Indices: 50449928--50450018 Score: 62
Period size: 6 Copynumber: 14.8 Consensus size: 6
50449918 ATTCTGTTAC
* * * *
50449928 CTGATA CTGATT CTAATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* *
50449977 CTGATT CT-ATCAC CTAATT CTGATT CTGATT CT-ATTT CTGAT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGA-TT CTGAT
50450019 AATGTTTCTT
Statistics
Matches: 67, Mismatches: 10, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
5 5 0.07
6 53 0.79
7 6 0.09
8 3 0.04
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:50451399 original size:30 final size:30
Alignment explanation
Indices: 50451363--50451427 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
50451353 ACCTTTAGTC
50451363 TAGTATGATTAGTAACATGTATATTTAACT
1 TAGTATGATTAGTAACATGTATATTTAACT
50451393 TAGTATGATTAGTAACATGTATATTTAACT
1 TAGTATGATTAGTAACATGTATATTTAACT
*
50451423 AAGTA
1 TAGTA
50451428 AGAGATTTGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.38, C:0.06, G:0.14, T:0.42
Consensus pattern (30 bp):
TAGTATGATTAGTAACATGTATATTTAACT
Found at i:50453062 original size:43 final size:43
Alignment explanation
Indices: 50452943--50453063 Score: 174
Period size: 44 Copynumber: 2.8 Consensus size: 43
50452933 CATAGGATTC
* *
50452943 CGATATGTGATT-CGTGTAAGACCACGTCTGGGACATTGGCAT
1 CGATATGTGATTACGTGTAAGACCACGTCTAGGACAGTGGCAT
*
50452985 CGATATGTGATTTACGTGTAAGACC-CTGTCTAGGATAGTGGCAT
1 CGATATGTGA-TTACGTGTAAGACCAC-GTCTAGGACAGTGGCAT
*
50453029 CGATATGTGATTACATGTAAGACCACGTCTAGGAC
1 CGATATGTGATTACGTGTAAGACCACGTCTAGGAC
50453064 GTTGGTGTTG
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
42 10 0.14
43 24 0.34
44 36 0.51
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (43 bp):
CGATATGTGATTACGTGTAAGACCACGTCTAGGACAGTGGCAT
Found at i:50454580 original size:46 final size:48
Alignment explanation
Indices: 50454513--50454643 Score: 162
Period size: 46 Copynumber: 2.8 Consensus size: 48
50454503 CACGTTAAGT
* * * *
50454513 CGATGCCATGTACCAGATATGGTCTTATACT-G-ACACATCATGTAGC
1 CGATGCCATGTCCCAGATATGGTCTTACACTAGCACACATAATCTAGC
* * *
50454559 CGATGCCATGTCCCAGATATGGTCTTACACTAGCTCTCATAATCTGGC
1 CGATGCCATGTCCCAGATATGGTCTTACACTAGCACACATAATCTAGC
*
50454607 CGATG-CATGTCCCAGATAT-TTCTTACACTAGCACACA
1 CGATGCCATGTCCCAGATATGGTCTTACACTAGCACACA
50454644 AACATTCCGA
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 44 0.60
47 15 0.21
48 14 0.19
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGATATGGTCTTACACTAGCACACATAATCTAGC
Found at i:50464335 original size:68 final size:68
Alignment explanation
Indices: 50464221--50464347 Score: 168
Period size: 68 Copynumber: 1.9 Consensus size: 68
50464211 CAGATGGTAT
* * *
50464221 GTAGCTAGGTCACATGTGTAATACGGGATGTATACCATGTGTACAAGAGAGATACGAGACATTAT
1 GTAGCTAGGTCACATGGGTAATACAGGATGTACACCATGTGTACAAGAGAGATACGAGACATTAT
50464286 GAG
66 GAG
* * *
50464289 GTAGCTAGGTCACATGGGTGATACTATG-TGTACACCATGTAG-ACAAGAGAGCTACGAGA
1 GTAGCTAGGTCACATGGGTAATAC-AGGATGTACACCATGT-GTACAAGAGAGATACGAGA
50464348 TAAATGTAGC
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
68 49 0.96
69 2 0.04
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (68 bp):
GTAGCTAGGTCACATGGGTAATACAGGATGTACACCATGTGTACAAGAGAGATACGAGACATTAT
GAG
Found at i:50468742 original size:47 final size:47
Alignment explanation
Indices: 50468673--50468988 Score: 156
Period size: 47 Copynumber: 6.8 Consensus size: 47
50468663 AAGGTATAAT
*
50468673 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATCAA
1 GTCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCACATCAA
* **
50468720 GTCGATGCCATGTTCCAGACATGGTCTTACACT-GACTCCCACGTATTCGT
1 GTCGATGCCATGTTCCAGACATGGTCTTACACTAG-CTCTCAC--A-TCAA
* * * * * *
50468770 GCCGATGCCATGTCCCAAACATGGTCTTATACT-GACACATCACGT-AA
1 GTCGATGCCATGTTCCAGACATGGTCTTACACTAG-CTC-TCACATCAA
* * * * *
50468817 -CCGATG-AATG-TCCTAGAAAT-GTCTTACACTGGCT-T-ACATGAAGA
1 GTCGATGCCATGTTCC-AGACATGGTCTTACACTAGCTCTCACAT-CA-A
* * * *
50468861 GGCCGATG-CATGTTCTAGACAT-GTCTTACACTAGCTCTCGCCTCAA
1 -GTCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCACATCAA
* * * * * ***
50468907 TATCAATGCCATG-TCCTAGACATGGTCTTACACTGGTTCTCAAATGTG
1 -GTCGATGCCATGTTCC-AGACATGGTCTTACACTAGCTCTCACATCAA
** *
50468955 GTCGATG-CATGCCCCAGACAT-GTCTTACTCTAGC
1 GTCGATGCCATGTTCCAGACATGGTCTTACACTAGC
50468989 ACACAAACAT
Statistics
Matches: 204, Mismatches: 46, Indels: 40
0.70 0.16 0.14
Matches are distributed among these distances:
41 3 0.01
42 1 0.00
43 1 0.00
44 13 0.06
45 18 0.09
46 51 0.25
47 59 0.29
48 19 0.09
49 1 0.00
50 35 0.17
51 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (47 bp):
GTCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCACATCAA
Found at i:50475460 original size:17 final size:17
Alignment explanation
Indices: 50475438--50475478 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
50475428 TTCTAACGCC
50475438 AGCAATTTTACTAAACA
1 AGCAATTTTACTAAACA
50475455 AGCAATTTTACTAAACA
1 AGCAATTTTACTAAACA
*
50475472 AGTAATT
1 AGCAATT
50475479 CACACGAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.32
Consensus pattern (17 bp):
AGCAATTTTACTAAACA
Found at i:50477291 original size:38 final size:39
Alignment explanation
Indices: 50477246--50477343 Score: 119
Period size: 39 Copynumber: 2.5 Consensus size: 39
50477236 GAAATCCTTG
* * *
50477246 TTATAATTATTGTGATTATAA-TTTACGA-TCGAATATTA
1 TTATAATTATTGTAATTATAATTTTAC-ATTCAAACATTA
* *
50477284 TTATAATTATTGTAATTGTAATTTTTCATTCAAACATTA
1 TTATAATTATTGTAATTATAATTTTACATTCAAACATTA
*
50477323 TTATAATTATGGTAATTATAA
1 TTATAATTATTGTAATTATAA
50477344 ATATTATATT
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
38 20 0.39
39 31 0.61
ACGTcount: A:0.38, C:0.05, G:0.08, T:0.49
Consensus pattern (39 bp):
TTATAATTATTGTAATTATAATTTTACATTCAAACATTA
Found at i:50481913 original size:15 final size:15
Alignment explanation
Indices: 50481890--50481924 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
50481880 TTTGGATTAC
* *
50481890 CATTGAGACCATGAT
1 CATTCAGACCAAGAT
50481905 CATTCAGACCAAGAT
1 CATTCAGACCAAGAT
50481920 CATTC
1 CATTC
50481925 CCTTCTCTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.26
Consensus pattern (15 bp):
CATTCAGACCAAGAT
Found at i:50484959 original size:37 final size:37
Alignment explanation
Indices: 50484909--50484987 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
50484899 TTATTACGAA
* * *
50484909 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
50484946 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
50484983 GTCTT
1 GTCTT
50484988 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:50485177 original size:47 final size:47
Alignment explanation
Indices: 50485106--50485408 Score: 471
Period size: 47 Copynumber: 6.4 Consensus size: 47
50485096 CCCTTCGGGA
* * * * * *
50485106 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
50485153 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50485200 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50485247 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
50485294 CTTATCACATATATATACACTTTCACATTCATCACATTGGCTATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50485343 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50485390 CTTATCACATATATACACT
1 CTTATCACATATATACACT
50485409 CACATCACAA
Statistics
Matches: 238, Mismatches: 16, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
47 195 0.82
49 43 0.18
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50485184 original size:25 final size:25
Alignment explanation
Indices: 50485156--50485234 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
50485146 ACTCGGCCCT
50485156 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
50485181 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
50485203 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
50485228 ATCACAT
1 ATCACAT
50485235 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:50485344 original size:96 final size:96
Alignment explanation
Indices: 50485106--50485404 Score: 480
Period size: 96 Copynumber: 3.2 Consensus size: 96
50485096 CCCTTCGGGA
* * * *
50485106 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* *
50485169 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
50485200 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
50485263 ACTTTCACATTCACCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
50485294 CTTATCACATATATATACACTTTCACATTCATCACATTGGCTATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
50485359 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
50485390 CTTATCACATATATA
1 CTTATCACATATATA
50485405 CACTCACATC
Statistics
Matches: 188, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
93 1 0.01
94 90 0.48
96 97 0.52
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50485362 original size:143 final size:141
Alignment explanation
Indices: 50485106--50485408 Score: 507
Period size: 143 Copynumber: 2.1 Consensus size: 141
50485096 CCCTTCGGGA
* * * * *
50485106 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCACCACATCGGCCACTAGGCCCTATCACATATATACAC
50485171 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
50485236 GGCCATTAGGC
131 GGCCATTAGGC
* * *
50485247 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATCCACCACATCGGCCACTAGGCCCTATCAC--ATATATAC
*
50485312 ACTTTCACATTCATCACATTGGCTATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
50485377 TCGGCCATTAGGC
129 TCGGCCATTAGGC
50485390 CTTATCACATATATACACT
1 CTTATCACATATATACACT
50485409 CACATCACAA
Statistics
Matches: 151, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
141 47 0.31
143 104 0.69
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATCCACCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:50486019 original size:57 final size:57
Alignment explanation
Indices: 50485951--50486068 Score: 236
Period size: 57 Copynumber: 2.1 Consensus size: 57
50485941 ACAGAATTTA
50485951 AAATGTGTTGTATTTGATTTCATTTGAAACTAGACTCATTAAGGAGTCTAAGCATAT
1 AAATGTGTTGTATTTGATTTCATTTGAAACTAGACTCATTAAGGAGTCTAAGCATAT
50486008 AAATGTGTTGTATTTGATTTCATTTGAAACTAGACTCATTAAGGAGTCTAAGCATAT
1 AAATGTGTTGTATTTGATTTCATTTGAAACTAGACTCATTAAGGAGTCTAAGCATAT
50486065 AAAT
1 AAAT
50486069 TTTATCTTAT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (57 bp):
AAATGTGTTGTATTTGATTTCATTTGAAACTAGACTCATTAAGGAGTCTAAGCATAT
Found at i:50489142 original size:37 final size:37
Alignment explanation
Indices: 50489042--50489144 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
50489032 CGAATAGTCC
* ***
50489042 CCACACGTAGTTATCGGGTCTTACCTAAACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
50489079 CCACATGTAGTCATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
50489116 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
50489145 ATATATTTCC
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:50489345 original size:48 final size:48
Alignment explanation
Indices: 50489285--50489814 Score: 826
Period size: 48 Copynumber: 11.0 Consensus size: 48
50489275 ATATACACAC
* *
50489285 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
50489333 ATCTCATGCATATTTCACATTAGCCATTCGGATTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
50489381 ATATCATACATATTCCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
50489429 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
50489477 ATCTCATACATATTTCACACTACCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
**
50489525 ATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
50489573 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
50489621 ATCTCAAACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
50489669 ATCTCATACATATTCCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* **
50489717 ATCTCATACATATTTTATGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
50489765 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
50489813 AT
1 AT
50489815 TTATCTTGTA
Statistics
Matches: 436, Mismatches: 46, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 436 1.00
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:50493527 original size:40 final size:40
Alignment explanation
Indices: 50493489--50494120 Score: 872
Period size: 40 Copynumber: 15.8 Consensus size: 40
50493479 CCAGCATGAT
* * * * *
50493489 TGCTCTTC-AGGACCTAGCCCGAATATAACACCAGCATGAA
1 TGCTCTTCGA-GACTTAGCCCGGATATATCACTAGCACGAA
* * ** * *
50493529 TGCTCTTCGGGACTTAACCCTAATATAACTCTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAA
50493569 TGCTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAA
50493609 TGCTCTTCG-GAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGAG-ACTTAGCCCGGATATATCACTAGCACGAA
* * * * *
50493649 TGCTCTTCGGGACTTAACCCTGATATAACTCTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAA
* * * * *
50493689 TTCTCTTCGAGACTTAGCCCGAATATAACTCTAGCGCGAA
1 TGCTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAA
* * *
50493729 TGCTTTTTGAGACTTAGCCCGGGTATATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAA
*
50493769 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
50493809 TGCTCTTCGGGACTTAGCCCGGATATAACTCTAGCGCGAA
1 TGCTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAA
*
50493849 TGCTCTTCGAGACTTAGCCCGGGTATATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
50493889 TGCTCTTCGGGACTTAGCCCGGATATAACTCTAGCGCGAA
1 TGCTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAA
* * *
50493929 TTCTTTTCGAGACTTAGCCCGGGTATATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAA
*
50493969 TGCTCTTCGAGACTTAGCCCAGATATATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAA
50494009 TGCTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAA
*
50494049 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAA
*
50494089 TGCTCTTCGAGACTTAGCCCGGGTATATCACT
1 TGCTCTTCGAGACTTAGCCCGGATATATCACT
50494121 CTCAATTCTC
Statistics
Matches: 526, Mismatches: 63, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
39 1 0.00
40 524 1.00
41 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:50495426 original size:37 final size:37
Alignment explanation
Indices: 50495325--50495427 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
50495315 CGAATAGTCC
* *
50495325 CCACACGTAGTTATCGGGTCTTACCCGAACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
50495362 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
50495399 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
50495428 ATATATTTCC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.22
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:50495634 original size:48 final size:48
Alignment explanation
Indices: 50495553--50496099 Score: 833
Period size: 48 Copynumber: 11.3 Consensus size: 48
50495543 GGCCATTCGG
*
50495553 CCACAATATACATACATCTCCTACATATTTCACATTAGCCATTCGGCTTTA
1 CCAC-ATATACAT--ATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* * *
50495604 CCAAATATACATATCTCATGCATATTTCACATTAGCCATTCGGATTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* * *
50495652 CCACATATATATATATATCATACATATTTCATATTAGCCATTCGGCTTTA
1 CCAC--ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* *
50495702 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGTTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
*
50495750 CCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* **
50495798 CCACATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
*
50495846 CCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* * *
50495894 CCACATATATATATCTCAAACATATTTCATATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* *
50495942 CCACATATACATATCTCATACATATTTCACACTACCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
* **
50495990 CCACATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
*
50496038 CCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
*
50496086 CCACATATATATAT
1 CCACATATACATAT
50496100 TTATCTTGTA
Statistics
Matches: 451, Mismatches: 43, Indels: 7
0.90 0.09 0.01
Matches are distributed among these distances:
48 397 0.88
50 51 0.11
51 3 0.01
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (48 bp):
CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
Found at i:50502975 original size:33 final size:33
Alignment explanation
Indices: 50502933--50502999 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
50502923 CTTAAACTTA
50502933 CCATTCCTTAACATTAAATCATTCAATCATACT
1 CCATTCCTTAACATTAAATCATTCAATCATACT
50502966 CCATTCCTTAACATTAAATCATTCAATCATACT
1 CCATTCCTTAACATTAAATCATTCAATCATACT
50502999 C
1 C
50503000 ATTATATCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.36, C:0.28, G:0.00, T:0.36
Consensus pattern (33 bp):
CCATTCCTTAACATTAAATCATTCAATCATACT
Found at i:50504404 original size:46 final size:48
Alignment explanation
Indices: 50504352--50504566 Score: 204
Period size: 46 Copynumber: 4.6 Consensus size: 48
50504342 TGAAATGTGT
** *
50504352 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCATTGAGAT-GA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGATAGACAA
* * *
50504398 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGATAGACAA
* * * * * * * *
50504446 TCCAGTATAAGACATATCTGGGACATGCATCGGTATTGAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGATAGACAA
* * * * *
50504492 GATAGTGTAAGACGTGTCTGGGACATGCATTAGCCTTGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGATAGACAA
* * *
50504540 GCTAGTGTAACACCTGTCTAGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
50504567 GCGTCAGCTT
Statistics
Matches: 131, Mismatches: 34, Indels: 6
0.77 0.20 0.04
Matches are distributed among these distances:
46 70 0.53
47 3 0.02
48 58 0.44
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGATAGACAA
Found at i:50504564 original size:94 final size:94
Alignment explanation
Indices: 50504352--50504566 Score: 304
Period size: 94 Copynumber: 2.3 Consensus size: 94
50504342 TGAAATGTGT
* * *
50504352 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCATTGAGATGAGAGCTAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGAGATAGTGTAAGACATGTCT
50504417 GGGACATGCATCAGCCTCGAGATATACAA
66 GGGACATGCATCAGCCTCGAGATATACAA
* * * * * *
50504446 TCCAGTATAAGACATATCTGGGACATGCATCGGTATTGAGACGAGAGATAGTGTAAGACGTGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGAGATAGTGTAAGACATGTCT
* *
50504511 GGGACATGCATTAGCCTTGAGATATACAA
66 GGGACATGCATCAGCCTCGAGATATACAA
* * *
50504540 GCTAGTGTAACACCTGTCTAGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
50504567 GCGTCAGCTT
Statistics
Matches: 103, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
94 103 1.00
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.25
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGAGATAGTGTAAGACATGTCT
GGGACATGCATCAGCCTCGAGATATACAA
Found at i:50504651 original size:49 final size:49
Alignment explanation
Indices: 50504584--50504712 Score: 136
Period size: 49 Copynumber: 2.6 Consensus size: 49
50504574 CTTATTGTGC
* * * *
50504584 GTCAGTGTAAGACTTGTCTGGGACATGGCATC-GACACT-AATATATGAGA
1 GTCAGTGTAAAACCTGTCTGGGACATGGCATCAG-C-CTCAATATATAAAA
** *
50504633 GTCAGTGTAAAACCTGTCTGGGACACAGCATCAGCCTCGATATATAAAA
1 GTCAGTGTAAAACCTGTCTGGGACATGGCATCAGCCTCAATATATAAAA
* * *
50504682 GTTAGTGTAAAACCTGTTTGGAACATGGCAT
1 GTCAGTGTAAAACCTGTCTGGGACATGGCAT
50504713 TGACTTTGGT
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
48 2 0.03
49 63 0.95
50 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (49 bp):
GTCAGTGTAAAACCTGTCTGGGACATGGCATCAGCCTCAATATATAAAA
Found at i:50510527 original size:46 final size:46
Alignment explanation
Indices: 50510460--50510637 Score: 177
Period size: 46 Copynumber: 3.8 Consensus size: 46
50510450 TGTAACCCGG
* * * *
50510460 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCAGG-TGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGATGTTCACAT
* * *
50510506 CCATAAGTGAACTCGGACTCAACTTAACAAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG--T--TCACAT
* **
50510556 CTCA-CA---AACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCACAT
50510599 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
50510638 CTCAATCATC
Statistics
Matches: 106, Mismatches: 16, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 7 0.07
45 3 0.03
46 59 0.56
47 26 0.25
48 1 0.01
50 6 0.06
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCACAT
Found at i:50510582 original size:93 final size:93
Alignment explanation
Indices: 50510469--50510638 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
50510459 GCCATAAGCG
** * *
50510469 AACTCAGACTCAACTCAACGAGCTCAGG-TGTTCGCATCCATAAGTGAACTCGGACTCAACTTAA
1 AACTCAGACTCAACTCAACGAGCTC-GGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
50510533 CAAGTTCGGATGCCTAGTTACATCTCACA
65 CAAGTTCGGATGCCTAGTTACATCTCACA
* *
50510562 AACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCAGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAAC
*
50510627 GAGTTCGGATGC
66 AAGTTCGGATGC
50510639 TCAATCATCC
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 67 0.97
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.22
Consensus pattern (93 bp):
AACTCAGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAAC
AAGTTCGGATGCCTAGTTACATCTCACA
Found at i:50516545 original size:48 final size:47
Alignment explanation
Indices: 50516440--50516651 Score: 225
Period size: 46 Copynumber: 4.5 Consensus size: 47
50516430 TATGTGTGCA
*
50516440 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACTAT--AGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGA-TATAAAGCT
* *
50516486 AGTGTAAGACATGTTTGGGACATGCATCAGTC-TCGAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCATCGAGATATA-AAGCT
* ** ** *
50516534 AGTGTAAGACATATCTGGGACATGCATCGGCATTAAGA-CGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGATATAAAGCT
* * *
50516580 AGTGTAAGACGTGTCTGGGACATGCATCAGCCTCGAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGATATA-AAGCT
* * *
50516628 AATGTAAAACCTGTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
50516652 GCGTCATCTA
Statistics
Matches: 136, Mismatches: 23, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
45 3 0.02
46 68 0.50
47 6 0.04
48 59 0.43
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGATATAAAGCT
Found at i:50516589 original size:94 final size:94
Alignment explanation
Indices: 50516440--50516651 Score: 334
Period size: 94 Copynumber: 2.3 Consensus size: 94
50516430 TATGTGTGCA
* * * *
50516440 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACTATAGCTAGTGTAAGACATGTTTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATTAAGACGAGAGCTAGTGTAAGACATGTCTGGG
*
50516505 ACATGCATCAGTCTCGAGATATACAAGCT
66 ACATGCATCAGCCTCGAGATATACAAGCT
* *
50516534 AGTGTAAGACATATCTGGGACATGCATCGGCATTAAGACGAGAGCTAGTGTAAGACGTGTCTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATTAAGACGAGAGCTAGTGTAAGACATGTCTGGG
50516599 ACATGCATCAGCCTCGAGATATACAAGCT
66 ACATGCATCAGCCTCGAGATATACAAGCT
* * *
50516628 AATGTAAAACCTGTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
50516652 GCGTCATCTA
Statistics
Matches: 107, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
94 107 1.00
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.25
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATTAAGACGAGAGCTAGTGTAAGACATGTCTGGG
ACATGCATCAGCCTCGAGATATACAAGCT
Found at i:50516809 original size:49 final size:48
Alignment explanation
Indices: 50516580--50516843 Score: 184
Period size: 49 Copynumber: 5.5 Consensus size: 48
50516570 GACGAGAGCT
* * * * * *
50516580 AGTGTAAGACGTGTCTGGGACAT-GCATCAGCCTCGAGATATACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCAACATCGATATAT-GAAGCC
* * * * * * * *
50516628 AATGTAAAACCTGTCTGGGACATGGCGTCATC-TAG-T-TGTG-TGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAACATCGATATATGAAGCC
* * *
50516672 AGTGTAAGACCTTTCTGGGACATGGCATCAACACCGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAACATCGATATATGA-AGCC
* * * * * *
50516721 AATGTAAGACCTGTTTAGGACACGGCAT-AAGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAA-CATCGATATATG-AAGCC
* * *
50516770 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTTGATATACT--AGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAACATCGATATA-TGAAGCC
50516817 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACC-TGTCTGGGACATGGC
50516844 GTCGGCATCT
Statistics
Matches: 165, Mismatches: 40, Indels: 22
0.73 0.18 0.10
Matches are distributed among these distances:
44 28 0.17
45 1 0.01
46 3 0.02
47 16 0.10
48 39 0.24
49 75 0.45
50 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCAACATCGATATATGAAGCC
Found at i:50520126 original size:26 final size:26
Alignment explanation
Indices: 50520094--50520177 Score: 114
Period size: 26 Copynumber: 3.2 Consensus size: 26
50520084 TTTATCCTAG
50520094 TAAAATTTTAACAATTTTACCCACGC
1 TAAAATTTTAACAATTTTACCCACGC
* *
50520120 TAAAATTTTAACGATTTTACCCATGC
1 TAAAATTTTAACAATTTTACCCACGC
* * * *
50520146 TAAAAATTTGACAATTTTACCCTCGA
1 TAAAATTTTAACAATTTTACCCACGC
50520172 TAAAAT
1 TAAAAT
50520178 GTCGAGGGTA
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.39, C:0.19, G:0.06, T:0.36
Consensus pattern (26 bp):
TAAAATTTTAACAATTTTACCCACGC
Found at i:50524488 original size:31 final size:31
Alignment explanation
Indices: 50524450--50524512 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
50524440 TTTAATTTTA
50524450 TATTATTATTACTTACTTATTTACTTTTTCC
1 TATTATTATTACTTACTTATTTACTTTTTCC
50524481 TATTATTATTACTTACTTATTTACTTTTTCC
1 TATTATTATTACTTACTTATTTACTTTTTCC
50524512 T
1 T
50524513 TCTCTTGGCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.22, C:0.16, G:0.00, T:0.62
Consensus pattern (31 bp):
TATTATTATTACTTACTTATTTACTTTTTCC
Found at i:50554881 original size:46 final size:44
Alignment explanation
Indices: 50554813--50554924 Score: 136
Period size: 46 Copynumber: 2.5 Consensus size: 44
50554803 AGGGGTGTTA
* *
50554813 CAGACATGTCTTACACTAGCTCTCGTCTCAATGT-CGATGCATGTCC
1 CAGACATGTCTTACACTAGCTCTC--AT-AATGTGCAATGCATGTCC
* *
50554859 CAGACATGTCTTATACTGGCTCTCATAATGTGGCCAATGCATGTCC
1 CAGACATGTCTTACACTAGCTCTCATAATGT-G-CAATGCATGTCC
50554905 CAGACATGTCTTACACTAGC
1 CAGACATGTCTTACACTAGC
50554925 ACACATATCA
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
43 5 0.09
44 1 0.02
46 51 0.89
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (44 bp):
CAGACATGTCTTACACTAGCTCTCATAATGTGCAATGCATGTCC
Found at i:50560066 original size:43 final size:42
Alignment explanation
Indices: 50559982--50560136 Score: 118
Period size: 43 Copynumber: 3.6 Consensus size: 42
50559972 TCTGAGACAT
* * *
50559982 CGTGTAAGACCATGTCTGGGACA-CAGGCCTC-AATTGAGATTTA
1 CGTGTAAGACCATGTCTAGGACATC-GGCATCGTATT--GATTTA
* *
50560025 CGTATAAGACCATGTCTGGGACATCGGCATCGTATCTGATTT-
1 CGTGTAAGACCATGTCTAGGACATCGGCATCGTAT-TGATTTA
* * * ** *
50560067 CGTGCAAGACCCTATCTAGGACAGAGGCATCGATATTGAATTA
1 CGTGTAAGACCATGTCTAGGACATCGGCATCG-TATTGATTTA
* * *
50560110 CATGTAAGACCACGTCTAGGACGTCGG
1 CGTGTAAGACCATGTCTAGGACATCGG
50560137 GATTATACTT
Statistics
Matches: 88, Mismatches: 19, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
42 30 0.34
43 54 0.61
44 3 0.03
45 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTAGGACATCGGCATCGTATTGATTTA
Found at i:50566112 original size:24 final size:24
Alignment explanation
Indices: 50566085--50566133 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
50566075 AATTTTCTCC
50566085 ATCAAACTAATATTAGTAATTGTT
1 ATCAAACTAATATTAGTAATTGTT
50566109 ATCAAACTAATATTAGTAATTGTT
1 ATCAAACTAATATTAGTAATTGTT
50566133 A
1 A
50566134 CGGGGCTCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (24 bp):
ATCAAACTAATATTAGTAATTGTT
Found at i:50571012 original size:39 final size:39
Alignment explanation
Indices: 50570968--50571052 Score: 120
Period size: 38 Copynumber: 2.2 Consensus size: 39
50570958 ATGTAGAACT
*
50570968 TGAAAAAGAATAAAGA-AGAAAATATATGGGTTATGATTA
1 TGAAAAA-AATAAAGATACAAAATATATGGGTTATGATTA
**
50571007 TG-AAAAAATATGGATACAAAATATATGGGTTATGATTA
1 TGAAAAAAATAAAGATACAAAATATATGGGTTATGATTA
50571045 TGAAAAAA
1 TGAAAAAA
50571053 TATGGATACT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
37 6 0.15
38 28 0.68
39 7 0.17
ACGTcount: A:0.53, C:0.01, G:0.19, T:0.27
Consensus pattern (39 bp):
TGAAAAAAATAAAGATACAAAATATATGGGTTATGATTA
Found at i:50571030 original size:38 final size:38
Alignment explanation
Indices: 50570986--50571061 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
50570976 AATAAAGAAG
50570986 AAAATATATGGGTTATGATTATGAAAAAATATGGATAC
1 AAAATATATGGGTTATGATTATGAAAAAATATGGATAC
50571024 AAAATATATGGGTTATGATTATGAAAAAATATGGATAC
1 AAAATATATGGGTTATGATTATGAAAAAATATGGATAC
50571062 TCGTAACTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.47, C:0.03, G:0.18, T:0.32
Consensus pattern (38 bp):
AAAATATATGGGTTATGATTATGAAAAAATATGGATAC
Found at i:50580065 original size:21 final size:23
Alignment explanation
Indices: 50580023--50580065 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
50580013 TTATCATTGT
**
50580023 TATAAAAAATATTTAATTATAAC
1 TATAAAAAATATTTAAAAATAAC
50580046 TATAAAAAA-A-TTAAAAATAA
1 TATAAAAAATATTTAAAAATAA
50580066 TTATCATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 8 0.44
22 1 0.06
23 9 0.50
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (23 bp):
TATAAAAAATATTTAAAAATAAC
Found at i:50580331 original size:21 final size:21
Alignment explanation
Indices: 50580307--50580359 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
50580297 CATTGTTTCT
*
50580307 AATCTCACCGCTACAATACCC
1 AATCTCACCGCTACAATAACC
* *
50580328 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAATAACC
50580349 AATCTCACCGC
1 AATCTCACCGC
50580360 CACCGCTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.32, C:0.40, G:0.08, T:0.21
Consensus pattern (21 bp):
AATCTCACCGCTACAATAACC
Found at i:50584175 original size:24 final size:25
Alignment explanation
Indices: 50584138--50584184 Score: 71
Period size: 24 Copynumber: 1.9 Consensus size: 25
50584128 ACACACTTAT
50584138 TTTATTAATATTTA-AATAAATATAA
1 TTTATTAATATTTATAA-AAATATAA
50584163 TTTATT-ATATTTATAAAAATAT
1 TTTATTAATATTTATAAAAATAT
50584185 GTTTGTATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (25 bp):
TTTATTAATATTTATAAAAATATAA
Found at i:50585981 original size:16 final size:16
Alignment explanation
Indices: 50585937--50585985 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
50585927 GAGATTTAAC
50585937 TTTAT-TATT-TTATT
1 TTTATATATTATTATT
* *
50585951 TTTA-AAAATATTTATT
1 TTTATATATTA-TTATT
50585967 TTTATATATTATTATT
1 TTTATATATTATTATT
50585983 TTT
1 TTT
50585986 TCTCAGTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
14 6 0.22
16 17 0.63
17 4 0.15
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTATATATTATTATT
Found at i:50586049 original size:20 final size:20
Alignment explanation
Indices: 50586013--50586062 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 20
50586003 TATTTTTATA
50586013 TATTTTTAAAATTTATTATTT
1 TATTTTTAAAA-TTATTATTT
*
50586034 TATTTTTGAAAA-TATTATTG
1 TATTTTT-AAAATTATTATTT
50586054 TACTTTTTA
1 TA-TTTTTA
50586063 TATATTTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 10 0.38
21 12 0.46
22 4 0.15
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (20 bp):
TATTTTTAAAATTATTATTT
Found at i:50596853 original size:39 final size:39
Alignment explanation
Indices: 50596800--50596884 Score: 152
Period size: 39 Copynumber: 2.2 Consensus size: 39
50596790 AAAATTTTTT
* *
50596800 TAAATAAATCTTTAACATTATTAAGAAGTATAAAAATTA
1 TAAAAAAAACTTTAACATTATTAAGAAGTATAAAAATTA
50596839 TAAAAAAAACTTTAACATTATTAAGAAGTATAAAAATTA
1 TAAAAAAAACTTTAACATTATTAAGAAGTATAAAAATTA
50596878 TAAAAAA
1 TAAAAAA
50596885 CTTTATTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.32
Consensus pattern (39 bp):
TAAAAAAAACTTTAACATTATTAAGAAGTATAAAAATTA
Found at i:50609765 original size:41 final size:41
Alignment explanation
Indices: 50609720--50609803 Score: 109
Period size: 41 Copynumber: 2.0 Consensus size: 41
50609710 CTCAAGGTTT
*
50609720 GATTTTATACACCAGCA-ATAAGCTTGCTAGGCAT-AAAGCCC
1 GATTTAATACACCAGCACA-AAGCTTGCTAGGC-TCAAAGCCC
* *
50609761 GATTTAATTCACCAGCACAAGGCTTGCTAGGCTCAAAGCCC
1 GATTTAATACACCAGCACAAAGCTTGCTAGGCTCAAAGCCC
50609802 GA
1 GA
50609804 ATATCACTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
40 1 0.03
41 36 0.95
42 1 0.03
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (41 bp):
GATTTAATACACCAGCACAAAGCTTGCTAGGCTCAAAGCCC
Found at i:50625638 original size:37 final size:37
Alignment explanation
Indices: 50625588--50625666 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
50625578 TTATTACGAA
* * *
50625588 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
50625625 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
50625662 GTCTT
1 GTCTT
50625667 TAGAGCTCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:50625830 original size:24 final size:24
Alignment explanation
Indices: 50625799--50625848 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
50625789 CACATTTATG
*
50625799 CACTTTCACATCCATCACATTGGC
1 CACTTTCACATCCATCACATCGGC
*
50625823 CACTTTCACATTCATCACATCGGC
1 CACTTTCACATCCATCACATCGGC
50625847 CA
1 CA
50625849 TTAAGCCTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.26, C:0.38, G:0.08, T:0.28
Consensus pattern (24 bp):
CACTTTCACATCCATCACATCGGC
Found at i:50625936 original size:47 final size:47
Alignment explanation
Indices: 50625823--50626246 Score: 668
Period size: 47 Copynumber: 8.9 Consensus size: 47
50625813 TCACATTGGC
*
50625823 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATA
* * **
50625872 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCGCGCATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
50625919 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATA
* * *
50625968 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCGCACATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
50626015 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATA
50626064 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
50626111 CACTTTCACATTCATCACATCGGCCATTAGGCCCTATTCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTA-TCACATATATA
*
50626159 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
50626206 CACTTTCACATTCATCACATGGGCCATTAGGCCTTATCACA
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
50626247 ATTTAGAATT
Statistics
Matches: 346, Mismatches: 24, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
47 177 0.51
48 45 0.13
49 124 0.36
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:50625966 original size:96 final size:96
Alignment explanation
Indices: 50625823--50626246 Score: 717
Period size: 96 Copynumber: 4.4 Consensus size: 96
50625813 TCACATTGGC
50625823 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATC
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATC
* * *
50625888 ACATCGGCTATTAGGCCTTATCGCGCATATA
66 ACATCGGCCATTAGGCCTTATCACACATATA
50625919 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATC
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATC
* *
50625984 ACATCGGCTATTAGGCCTTATCGCACATATA
66 ACATCGGCCATTAGGCCTTATCACACATATA
50626015 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATC
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATC
*
50626080 ACATCGGCCATTAGGCCTTATCACATATATA
66 ACATCGGCCATTAGGCCTTATCACACATATA
* *
50626111 CACTTTCACATTCATCACATCGGCCATTAGGCCCTATTCAC--ATATATACACTTTCACATTCAT
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTA-TCACATATATATACACTTTCACATTCAT
* *
50626174 CACATCGGCCATTAAGCCTTATCACATATATA
65 CACATCGGCCATTAGGCCTTATCACACATATA
* *
50626206 CACTTTCACATTCATCACATGGGCCATTAGGCCTTATCACA
1 CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACA
50626247 ATTTAGAATT
Statistics
Matches: 317, Mismatches: 9, Indels: 5
0.96 0.03 0.02
Matches are distributed among these distances:
94 4 0.01
95 87 0.27
96 222 0.70
97 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATC
ACATCGGCCATTAGGCCTTATCACACATATA
Found at i:50629942 original size:28 final size:27
Alignment explanation
Indices: 50629878--50630057 Score: 279
Period size: 28 Copynumber: 6.6 Consensus size: 27
50629868 TTATTAAGTC
* * *
50629878 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
50629905 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCA-ACT
50629933 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
50629960 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
50629988 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
* *
50630016 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
50630043 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50630058 GCACAATTTA
Statistics
Matches: 146, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.45
28 80 0.55
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:50629962 original size:55 final size:54
Alignment explanation
Indices: 50629878--50630057 Score: 279
Period size: 55 Copynumber: 3.3 Consensus size: 54
50629868 TTATTAAGTC
* * *
50629878 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCA-ACT
*
50629933 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATC-AACT
* *
50629988 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAATCAACT
50630043 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50630058 GCACAATTTA
Statistics
Matches: 117, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
55 90 0.77
56 27 0.23
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACT
Found at i:50629998 original size:83 final size:82
Alignment explanation
Indices: 50629878--50630057 Score: 288
Period size: 83 Copynumber: 2.2 Consensus size: 82
50629868 TTATTAAGTC
* * *
50629878 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACTCGCACACTTA
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
50629943 GTGCTACATAGTCAACT
66 GTGCTACATAGTCAACT
* *
50629960 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
* *
50630025 AGTGCTACATATTCAATT
65 AGTGCTACATAGTCAACT
50630043 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50630058 GCACAATTTA
Statistics
Matches: 90, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
82 20 0.22
83 70 0.78
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (82 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAGTCAACT
Found at i:50644197 original size:25 final size:25
Alignment explanation
Indices: 50644167--50644221 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
50644157 TTATCGTTTA
* *
50644167 AGCTCAATA-GAGCTTACTGTCCAT
1 AGCTCAAGAGGAGCTTACTGACCAT
*
50644191 CAGCTCAGGAGGAGCTTACTGACCAT
1 -AGCTCAAGAGGAGCTTACTGACCAT
50644217 AGCTC
1 AGCTC
50644222 GAAAGAGTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 12 0.46
26 14 0.54
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (25 bp):
AGCTCAAGAGGAGCTTACTGACCAT
Found at i:50652307 original size:48 final size:48
Alignment explanation
Indices: 50652229--50652325 Score: 158
Period size: 48 Copynumber: 2.0 Consensus size: 48
50652219 CCTTAGAACA
* * *
50652229 TCCAAAAGGAAAAATTGAGGATGTATTGGTACGTGTAGATAAATTTAT
1 TCCAAAAGAAAAAATCGAGGACGTATTGGTACGTGTAGATAAATTTAT
*
50652277 TCCAGAAGAAAAAATCGAGGACGTATTGGTACGTGTAGATAAATTTAT
1 TCCAAAAGAAAAAATCGAGGACGTATTGGTACGTGTAGATAAATTTAT
50652325 T
1 T
50652326 TTCCCTGCTA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (48 bp):
TCCAAAAGAAAAAATCGAGGACGTATTGGTACGTGTAGATAAATTTAT
Found at i:50652943 original size:24 final size:24
Alignment explanation
Indices: 50652916--50652963 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
50652906 ATATTCGTGG
50652916 CATTAGCCCATCTGTTTACATGCA
1 CATTAGCCCATCTGTTTACATGCA
* * *
50652940 CATTAGTCCGTCTGTTTGCATGCA
1 CATTAGCCCATCTGTTTACATGCA
50652964 TAAGGTCATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.35
Consensus pattern (24 bp):
CATTAGCCCATCTGTTTACATGCA
Found at i:50655533 original size:146 final size:146
Alignment explanation
Indices: 50655347--50655641 Score: 581
Period size: 146 Copynumber: 2.0 Consensus size: 146
50655337 ATTATACAGA
50655347 AGTAAAAATATGTTATCGTTTATTTCATTTGAAACTAGACTCATTAAGGAGTCTAAGTATATAAA
1 AGTAAAAATATGTTATCGTTTATTTCATTTGAAACTAGACTCATTAAGGAGTCTAAGTATATAAA
50655412 TTTTATCTTATAACAATTTTTGTACCATTTATAATGATTTTCTGAAAACAGAACAGGGGACCTCG
66 TTTTATCTTATAACAATTTTTGTACCATTTATAATGATTTTCTGAAAACAGAACAGGGGACCTCG
50655477 AAGTCATTTTGACTCT
131 AAGTCATTTTGACTCT
50655493 AGTAAAAATATGTTATCGTTTATTTCATTTGAAACTAGACTCATTAAGGAGTCTAAGTATATAAA
1 AGTAAAAATATGTTATCGTTTATTTCATTTGAAACTAGACTCATTAAGGAGTCTAAGTATATAAA
*
50655558 TTTTATCTTATAACCATTTTTGTACCATTTATAATGATTTTCTGAAAACAGAACAGGGGACCTCG
66 TTTTATCTTATAACAATTTTTGTACCATTTATAATGATTTTCTGAAAACAGAACAGGGGACCTCG
50655623 AAGTCATTTTGACTCT
131 AAGTCATTTTGACTCT
50655639 AGT
1 AGT
50655642 CCATGCCACT
Statistics
Matches: 148, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
146 148 1.00
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38
Consensus pattern (146 bp):
AGTAAAAATATGTTATCGTTTATTTCATTTGAAACTAGACTCATTAAGGAGTCTAAGTATATAAA
TTTTATCTTATAACAATTTTTGTACCATTTATAATGATTTTCTGAAAACAGAACAGGGGACCTCG
AAGTCATTTTGACTCT
Found at i:50656192 original size:39 final size:39
Alignment explanation
Indices: 50656135--50656342 Score: 290
Period size: 39 Copynumber: 5.3 Consensus size: 39
50656125 CGGGACTTTA
* *
50656135 AGCCCGAATATAATACCAGCACGAATGCCTTCGGGGCTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGGCTT
* *
50656174 AGCCCGGATATAACACCAGCACGAATGCCTTTGGGGTTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGGCTT
* * *
50656213 AGCCTGGATATAACACCAGCACAAATGCCTTTGGGGCTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGGCTT
* ** *
50656252 AGCCCGGATATAACCCCAGCACGAATGCCTTCAAGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGGCTT
* * *
50656291 AGCCCGGATATAACACCAGCACGAATTCCTTCAGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGGCTT
50656330 AGCCCGGATATAA
1 AGCCCGGATATAA
50656343 TTCTCCATTA
Statistics
Matches: 152, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 152 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (39 bp):
AGCCCGGATATAACACCAGCACGAATGCCTTCGGGGCTT
Found at i:50662127 original size:39 final size:39
Alignment explanation
Indices: 50662060--50662316 Score: 381
Period size: 39 Copynumber: 6.5 Consensus size: 39
50662050 ACAAAGCATG
* * *
50662060 CGGGACTTTAAGCCCGAATATAATACCAGTACGAATGCCTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
*
50662101 CGGGGCTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
50662140 TGGG-CTTTAGCCCGGATATAACACCAGCACAAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
50662179 CGGGCCTTAGCCCGGATATAACCCCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* * *
50662218 CGAGACTTAGCCCGAATATAACATCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
50662257 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
50662296 CGGGACTTAGCCCGGATATAA
1 CGGGACTTAGCCCGGATATAA
50662317 TTCTCCATTA
Statistics
Matches: 197, Mismatches: 17, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
38 1 0.01
39 188 0.95
40 3 0.02
41 5 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:50675084 original size:37 final size:37
Alignment explanation
Indices: 50675031--50675133 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
50675021 CGAATAGTCC
*
50675031 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
50675068 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
50675105 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
50675134 ATATATTTCC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:50675332 original size:48 final size:48
Alignment explanation
Indices: 50675274--50675425 Score: 277
Period size: 48 Copynumber: 3.2 Consensus size: 48
50675264 ATATACACAC
* *
50675274 ATCTCCTACATAATTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
50675322 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
50675370 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACGT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
50675418 ATCTCATA
1 ATCTCATA
50675426 TGTGACAGCC
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 101 1.00
ACGTcount: A:0.31, C:0.30, G:0.07, T:0.33
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:50689778 original size:14 final size:13
Alignment explanation
Indices: 50689758--50689789 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
50689748 AATATTTGAC
50689758 TTGTTCTTAATTA
1 TTGTTCTTAATTA
50689771 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
50689785 TTGTT
1 TTGTT
50689790 TTGATATTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:50690550 original size:19 final size:19
Alignment explanation
Indices: 50690515--50690552 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
50690505 TTGCAATTTA
*
50690515 AATTTTTATTTTCTTTTCT
1 AATTTTTATTTTATTTTCT
50690534 AATTTTTCA-TTTATTTTCT
1 AATTTTT-ATTTTATTTTCT
50690553 TCTGACAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.18, C:0.11, G:0.00, T:0.71
Consensus pattern (19 bp):
AATTTTTATTTTATTTTCT
Found at i:50698038 original size:14 final size:15
Alignment explanation
Indices: 50698019--50698048 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
50698009 ATATTTCACT
50698019 TGTTCTTAATT-TTG
1 TGTTCTTAATTCTTG
50698033 TGTTCTTAATTCTTG
1 TGTTCTTAATTCTTG
50698048 T
1 T
50698049 TTTGATATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.13, C:0.10, G:0.13, T:0.63
Consensus pattern (15 bp):
TGTTCTTAATTCTTG
Found at i:50700596 original size:25 final size:25
Alignment explanation
Indices: 50700545--50700643 Score: 101
Period size: 25 Copynumber: 4.0 Consensus size: 25
50700535 ACAAGGAATT
* ** **
50700545 TTTAGATCATCTGCCATTAAGAATC
1 TTTAGATAATCTGCCACAAAGGCTC
50700570 TTTAGATAATCTGCCACAAAGGCTC
1 TTTAGATAATCTGCCACAAAGGCTC
*
50700595 TTTAGATAATTTGCCACAAAGGCTC
1 TTTAGATAATCTGCCACAAAGGCTC
* * *
50700620 TTCAGATGAT-TCACCACAAAGGCT
1 TTTAGATAATCT-GCCACAAAGGCT
50700644 TGGTTTGGTT
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
24 1 0.02
25 63 0.98
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.30
Consensus pattern (25 bp):
TTTAGATAATCTGCCACAAAGGCTC
Found at i:50704271 original size:27 final size:27
Alignment explanation
Indices: 50704238--50704381 Score: 168
Period size: 27 Copynumber: 5.3 Consensus size: 27
50704228 CCTTATGTGA
* *
50704238 TAAAATGACTGAAATACCCCCATATGG
1 TAAAATGACTGAAATACCCCTATAAGG
50704265 TAAAATGACTGAAATA-CCCTCATAAGG
1 TAAAATGACTGAAATACCCCT-ATAAGG
*
50704292 TAAAATGACCGAAATACCCCTAT-AGG
1 TAAAATGACTGAAATACCCCTATAAGG
* * *
50704318 ATAGAATGAC-CACAATACCCCTATAGGG
1 -TAAAATGACTGA-AATACCCCTATAAGG
* *
50704346 TAAAATGACTGTAATACCCCTGTAAGG
1 TAAAATGACTGAAATACCCCTATAAGG
50704373 TAAAATGAC
1 TAAAATGAC
50704382 AGATTTGTTC
Statistics
Matches: 100, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
26 7 0.07
27 87 0.87
28 6 0.06
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.22
Consensus pattern (27 bp):
TAAAATGACTGAAATACCCCTATAAGG
Found at i:50704446 original size:22 final size:24
Alignment explanation
Indices: 50704416--50704461 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
50704406 ATGTATTTGA
50704416 GCATGCCATGT-T-ATATATATGTT
1 GCATGCCATGTATGATAT-TATGTT
50704439 GCAT-CCATGTATGATATTATGTT
1 GCATGCCATGTATGATATTATGTT
50704462 ACATTGCATG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 6 0.29
23 11 0.52
24 4 0.19
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.43
Consensus pattern (24 bp):
GCATGCCATGTATGATATTATGTT
Found at i:50704754 original size:18 final size:18
Alignment explanation
Indices: 50704730--50704780 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
50704720 TTGCATATTG
50704730 CATTGATTACTGTTACTAA
1 CATTGATTACTGTTAC-AA
*
50704749 -ATTGATCA-TGGTTACAA
1 CATTGATTACT-GTTACAA
*
50704766 CACTGATTACTGTTA
1 CATTGATTACTGTTA
50704781 TTGCACTGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 7
0.72 0.08 0.19
Matches are distributed among these distances:
17 3 0.12
18 22 0.85
19 1 0.04
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (18 bp):
CATTGATTACTGTTACAA
Found at i:50704888 original size:34 final size:34
Alignment explanation
Indices: 50704794--50704888 Score: 136
Period size: 34 Copynumber: 2.8 Consensus size: 34
50704784 CACTGATTAA
* *
50704794 TGTTACTGAAATGGGCTAAAGCCCAAACCGCTAC
1 TGTTACTGAAATGGGCTAAGGCCCAGACCGCTAC
*
50704828 TGTTACTGAAATGGGCTAAGGCCCAGACTGCTAC
1 TGTTACTGAAATGGGCTAAGGCCCAGACCGCTAC
* * *
50704862 TGTTACTGATATGGGCTTAGGTCCAGA
1 TGTTACTGAAATGGGCTAAGGCCCAGA
50704889 ATGTATTCGC
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 55 1.00
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (34 bp):
TGTTACTGAAATGGGCTAAGGCCCAGACCGCTAC
Found at i:50708250 original size:40 final size:40
Alignment explanation
Indices: 50708156--50708380 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
50708146 TATTCGAATG
* *
50708156 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * *
50708197 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
50708237 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
50708277 ATATCCGGGCTAAAACCCGAAGGTATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
50708317 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
50708357 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
50708381 CTTGCGCAAG
Statistics
Matches: 157, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 127 0.81
41 29 0.18
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:50708336 original size:80 final size:80
Alignment explanation
Indices: 50708156--50708416 Score: 303
Period size: 80 Copynumber: 3.3 Consensus size: 80
50708146 TATTCGAATG
* * * *
50708156 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
50708221 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTTGCT
* * * * *
50708237 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGTA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
50708302 TTTGTGCTAG-TGACT
66 TTCGTGCGAGTTG-CT
* * * *
50708317 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * * *
50708382 TT-GCGCAAGTAGTT
66 TTCGTGCGAGTTGCT
*
50708396 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
50708417 ATTGCTTGAG
Statistics
Matches: 153, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 93 0.61
81 32 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTTGCT
Found at i:50712466 original size:30 final size:29
Alignment explanation
Indices: 50712420--50712643 Score: 124
Period size: 29 Copynumber: 7.7 Consensus size: 29
50712410 TGTTTCTTGA
* *
50712420 CAGAGATAGCCACAAAGGTTGTCCTTTAG
1 CAGAGATAGCCACAAAGGCTATCCTTTAG
* *
50712449 TAGAGATTAGCCGCAAAGGCTATCCTTTAG
1 CAGAGA-TAGCCACAAAGGCTATCCTTTAG
* * *
50712479 CAAAGATAGCCACAAAGGCT-TCATTTAA
1 CAGAGATAGCCACAAAGGCTATCCTTTAG
* * *
50712507 CATTCA-ATACTCACCACAAAGGCTTTCCTTTTAG
1 CA--GAGATA---GCCACAAAGGCTATCC-TTTAG
* * *
50712541 -AG-TATTGCCAAAAAGGC-ATTCCTTT--
1 CAGAGATAGCCACAAAGGCTA-TCCTTTAG
* * *
50712566 CAGAGATAGCCACGAAGGCGT-TCTTTTAA
1 CAGAGATAGCCACAAAGGC-TATCCTTTAG
* *
50712595 CAGAGATAGCCACAAAGACT-TCCTTATAA
1 CAGAGATAGCCACAAAGGCTATCCTT-TAG
*
50712624 TAGAGATAGCCACAAAGGCT
1 CAGAGATAGCCACAAAGGCT
50712644 CACTTATACA
Statistics
Matches: 150, Mismatches: 28, Indels: 34
0.71 0.13 0.16
Matches are distributed among these distances:
26 2 0.01
27 19 0.13
28 25 0.17
29 59 0.39
30 25 0.17
31 2 0.01
32 11 0.07
33 3 0.02
34 4 0.03
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.25
Consensus pattern (29 bp):
CAGAGATAGCCACAAAGGCTATCCTTTAG
Found at i:50712497 original size:29 final size:29
Alignment explanation
Indices: 50712423--50712498 Score: 98
Period size: 30 Copynumber: 2.6 Consensus size: 29
50712413 TTCTTGACAG
* * * *
50712423 AGATAGCCACAAAGGTTGTCCTTTAGTAG
1 AGATAGCCACAAAGGCTATCCTTTAGCAA
*
50712452 AGATTAGCCGCAAAGGCTATCCTTTAGCAA
1 AGA-TAGCCACAAAGGCTATCCTTTAGCAA
50712482 AGATAGCCACAAAGGCT
1 AGATAGCCACAAAGGCT
50712499 TCATTTAACA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
29 16 0.40
30 24 0.60
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.22
Consensus pattern (29 bp):
AGATAGCCACAAAGGCTATCCTTTAGCAA
Found at i:50720947 original size:47 final size:47
Alignment explanation
Indices: 50720893--50721134 Score: 331
Period size: 47 Copynumber: 5.1 Consensus size: 47
50720883 TTAGGATTTT
** *
50720893 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGTATATATGAGATAAGGCCGAATGGCCA
* *
50720940 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--TATATA--TGAGATAAGGCCGAATGGCCA
** * *
50720991 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGAGATAAGGCCGAATGGCCA
*
50721038 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGAGATAAGGCCGAATGGCCA
* * *
50721085 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGTATATATGAGATAAGGCCGAATGGCCA
50721132 ATG
1 ATG
50721135 AGAAATGTGT
Statistics
Matches: 176, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
47 129 0.73
49 9 0.05
51 38 0.22
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGAGATAAGGCCGAATGGCCA
Found at i:50720995 original size:24 final size:24
Alignment explanation
Indices: 50720967--50721042 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
50720957 CTGTATATAT
50720967 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
50720991 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
50721014 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
50721038 ATGTG
1 ATGTG
50721043 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:50721244 original size:46 final size:46
Alignment explanation
Indices: 50721108--50721244 Score: 186
Period size: 46 Copynumber: 3.0 Consensus size: 46
50721098 GAACATGTAT
* *
50721108 ATATGTGGTAAGGCCGAATGGCTAATGAGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATGG
* *
50721154 ATATGAGGTAAAGCCGAATGGCTAAT-ACGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGA-GAAATGTGTATGAGATGG
* * * *
50721200 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATG
50721245 TGTATATATA
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
45 1 0.01
46 78 0.99
ACGTcount: A:0.36, C:0.08, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATGG
Found at i:50724412 original size:16 final size:17
Alignment explanation
Indices: 50724376--50724410 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
50724366 TTTTAAGCTC
50724376 TTAAAAAAATTACACAT
1 TTAAAAAAATTACACAT
*
50724393 TTAAAAAATTTACACAT
1 TTAAAAAAATTACACAT
50724410 T
1 T
50724411 AACTTACCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.34
Consensus pattern (17 bp):
TTAAAAAAATTACACAT
Found at i:50726755 original size:9 final size:9
Alignment explanation
Indices: 50726741--50726802 Score: 52
Period size: 9 Copynumber: 6.2 Consensus size: 9
50726731 GTTACTAGTT
50726741 TTATTTTTA
1 TTATTTTTA
50726750 TTATTTTTA
1 TTATTTTTA
50726759 TTATTATGTTTA
1 TTA-T-T-TTTA
*
50726771 TTCTTGTTATGA
1 TTATT-TT-T-A
50726783 TTATTTTTA
1 TTATTTTTA
*
50726792 TCATTTTTA
1 TTATTTTTA
50726801 TT
1 TT
50726803 TTTCATTGCA
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
9 22 0.50
10 6 0.14
11 5 0.11
12 11 0.25
ACGTcount: A:0.21, C:0.03, G:0.05, T:0.71
Consensus pattern (9 bp):
TTATTTTTA
Found at i:50726759 original size:15 final size:15
Alignment explanation
Indices: 50726739--50726805 Score: 59
Period size: 15 Copynumber: 4.7 Consensus size: 15
50726729 TGGTTACTAG
50726739 TTTTATTTTTATTAT
1 TTTTATTTTTATTAT
50726754 TTTTA---TTATTAT
1 TTTTATTTTTATTAT
* * *
50726766 GTTTATTCTTGTTAT
1 TTTTATTTTTATTAT
** *
50726781 GATTATTTTTATCAT
1 TTTTATTTTTATTAT
50726796 TTTTATTTTT
1 TTTTATTTTT
50726806 CATTGCACTA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
12 11 0.27
15 30 0.73
ACGTcount: A:0.19, C:0.03, G:0.04, T:0.73
Consensus pattern (15 bp):
TTTTATTTTTATTAT
Found at i:50726770 original size:21 final size:21
Alignment explanation
Indices: 50726741--50726802 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
50726731 GTTACTAGTT
50726741 TTATTTTTATTATTTTTATTA
1 TTATTTTTATTATTTTTATTA
* * * *
50726762 TTATGTTTATTCTTGTTATGA
1 TTATTTTTATTATTTTTATTA
*
50726783 TTATTTTTATCATTTTTATT
1 TTATTTTTATTATTTTTATT
50726803 TTTCATTGCA
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.21, C:0.03, G:0.05, T:0.71
Consensus pattern (21 bp):
TTATTTTTATTATTTTTATTA
Found at i:50735907 original size:43 final size:42
Alignment explanation
Indices: 50735857--50735963 Score: 135
Period size: 43 Copynumber: 2.5 Consensus size: 42
50735847 GTACCAATGG
* * *
50735857 GATATGGTCTTACATGTAATCTCGTATCGATGCCAATAGCCTA
1 GATATGGTCTTACATGTAATCTCATATCAATGCC-ATAGCCCA
* *
50735900 GCTATGGTCTTACATG-AAGTCTCATATCAATGCCATATCCCA
1 GATATGGTCTTACATGTAA-TCTCATATCAATGCCATAGCCCA
*
50735942 GATATGGTCTTACACGTAATCT
1 GATATGGTCTTACATGTAATCT
50735964 TAGTAACCCT
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
42 25 0.45
43 30 0.55
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (42 bp):
GATATGGTCTTACATGTAATCTCATATCAATGCCATAGCCCA
Found at i:50740492 original size:18 final size:18
Alignment explanation
Indices: 50740469--50740506 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
50740459 TTAATGTGAC
50740469 ACGCTAGATTCGGGCCTA
1 ACGCTAGATTCGGGCCTA
50740487 ACGCTAGATTCGGGCCTA
1 ACGCTAGATTCGGGCCTA
50740505 AC
1 AC
50740507 TTTTGGGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (18 bp):
ACGCTAGATTCGGGCCTA
Found at i:50741967 original size:19 final size:17
Alignment explanation
Indices: 50741930--50741969 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
50741920 ATGGAAAAAC
*
50741930 AAAGAGAGAAAGTTGAG
1 AAAGAGAGAAAGATGAG
50741947 AAAGAAGAGAAGAGATGAG
1 AAAG-AGAGAA-AGATGAG
50741966 AAAG
1 AAAG
50741970 TTGTGGTGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 4 0.20
18 6 0.30
19 10 0.50
ACGTcount: A:0.57, C:0.00, G:0.35, T:0.07
Consensus pattern (17 bp):
AAAGAGAGAAAGATGAG
Found at i:50742552 original size:10 final size:10
Alignment explanation
Indices: 50742518--50742561 Score: 52
Period size: 10 Copynumber: 4.2 Consensus size: 10
50742508 GAAAATAATC
* *
50742518 AAAATTAATC
1 AAAATTATTT
50742528 AAAATTTATTAT
1 AAAA-TTATT-T
50742540 AAAATTATTT
1 AAAATTATTT
50742550 AAAATTATTT
1 AAAATTATTT
50742560 AA
1 AA
50742562 GTCCAAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 17 0.57
11 9 0.30
12 4 0.13
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (10 bp):
AAAATTATTT
Found at i:50744382 original size:6 final size:6
Alignment explanation
Indices: 50744366--50744410 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
50744356 ATTTTAATTC
* * *
50744366 TTTTC- TTTTCT TTTTCT TTTTCT CTTTCT TTTTGT TTTTGT TTTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTT
50744411 AGTTGTTTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
5 5 0.14
6 31 0.86
ACGTcount: A:0.00, C:0.13, G:0.04, T:0.82
Consensus pattern (6 bp):
TTTTCT
Found at i:50760058 original size:28 final size:27
Alignment explanation
Indices: 50760001--50760152 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
50759991 TAAATTGTGC
*
50760001 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
50760028 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
50760056 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
50760083 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* * *
50760111 AGCACTAAGTGTGGGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
50760138 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50760153 GACTTAATAT
Statistics
Matches: 117, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
27 65 0.56
28 52 0.44
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:50760065 original size:55 final size:55
Alignment explanation
Indices: 50760001--50760152 Score: 250
Period size: 55 Copynumber: 2.8 Consensus size: 55
50759991 TAAATTGTGC
*
50760001 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
50760056 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * * *
50760111 AGCACTAAGTGTGGGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
50760153 GACTTAATAT
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 91 1.00
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:50765823 original size:42 final size:42
Alignment explanation
Indices: 50765777--50765860 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
50765767 AGCACGAGTA
50765777 AGTCAATTTTATGGGTAACAATTCTAAACCTTAGAACAACCC
1 AGTCAATTTTATGGGTAACAATTCTAAACCTTAGAACAACCC
50765819 AGTCAATTTTATGGGTAACAATTCTAAACCTTAGAACAACCC
1 AGTCAATTTTATGGGTAACAATTCTAAACCTTAGAACAACCC
50765861 CTATAACAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (42 bp):
AGTCAATTTTATGGGTAACAATTCTAAACCTTAGAACAACCC
Found at i:50768589 original size:3 final size:3
Alignment explanation
Indices: 50768575--50768643 Score: 54
Period size: 3 Copynumber: 22.7 Consensus size: 3
50768565 GGCCATTTCC
*
50768575 TTA TTT TTA TTA TTA TT- TTA TTA TTA -TA TTTA GTTA TTTA GTTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA -TTA -TTA -TTA TTA
* *
50768621 TTA TTA TTA CTG TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TT
50768644 TTTTGTATAG
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
2 6 0.11
3 36 0.68
4 11 0.21
ACGTcount: A:0.26, C:0.01, G:0.04, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:50768592 original size:12 final size:12
Alignment explanation
Indices: 50768575--50768646 Score: 65
Period size: 12 Copynumber: 5.7 Consensus size: 12
50768565 GGCCATTTCC
50768575 TTATTTTTATTA
1 TTATTTTTATTA
50768587 TTA-TTTTATTA
1 TTATTTTTATTA
*
50768598 TTATATTTAGTTA
1 TTATTTTTA-TTA
50768611 TTTAGTTATTTTATTA
1 -TTA--T-TTTTATTA
* *
50768627 TTACTGTTATTA
1 TTATTTTTATTA
50768639 TTATTTTT
1 TTATTTTT
50768647 TGTATAGTTG
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
11 11 0.23
12 20 0.42
13 3 0.06
14 3 0.06
15 3 0.06
16 4 0.08
17 4 0.08
ACGTcount: A:0.25, C:0.01, G:0.04, T:0.69
Consensus pattern (12 bp):
TTATTTTTATTA
Found at i:50768611 original size:16 final size:15
Alignment explanation
Indices: 50768581--50768643 Score: 53
Period size: 17 Copynumber: 4.1 Consensus size: 15
50768571 TTCCTTATTT
50768581 TTATTA-TTATTTTA
1 TTATTAGTTATTTTA
50768595 TTATTA--TA-TTTA
1 TTATTAGTTATTTTA
50768607 GTTATTTAGTTATTTTA
1 -TTA-TTAGTTATTTTA
50768624 TTATTACTGTTATTATTA
1 TTATTA--GTTATT-TTA
50768642 TT
1 TT
50768644 TTTTGTATAG
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
12 4 0.10
13 5 0.12
14 9 0.22
15 3 0.07
16 5 0.12
17 10 0.24
18 5 0.12
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.67
Consensus pattern (15 bp):
TTATTAGTTATTTTA
Found at i:50770753 original size:58 final size:58
Alignment explanation
Indices: 50770639--50770755 Score: 173
Period size: 58 Copynumber: 2.0 Consensus size: 58
50770629 TTGTTTATAC
* * *
50770639 GATAAATTCCCTGAATTGTTTTTTGTGTTTAAATAATTTTCTCACACCTGTCATTAGA
1 GATAAATTCCCTAAATTGTTCTTTGTGTTTAAATAATTTTCTCACACCTCTCATTAGA
* *
50770697 GATAAATTCCCTAAATTGTTCTTTGTGTTTAAGTACTTTTCTCACACCTACT-ATTAGA
1 GATAAATTCCCTAAATTGTTCTTTGTGTTTAAATAATTTTCTCACACCT-CTCATTAGA
50770755 G
1 G
50770756 TTAATTTTTT
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
58 52 0.98
59 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.12, T:0.44
Consensus pattern (58 bp):
GATAAATTCCCTAAATTGTTCTTTGTGTTTAAATAATTTTCTCACACCTCTCATTAGA
Found at i:50775506 original size:40 final size:40
Alignment explanation
Indices: 50775445--50775691 Score: 327
Period size: 40 Copynumber: 6.2 Consensus size: 40
50775435 CGGAATTTAG
* * * *
50775445 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
50775485 CCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
50775525 CCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
50775565 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
*
50775605 CCGGATAAAATCACTAGCATAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* *
50775645 CCGGATAAAATCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
50775685 CCGGATA
1 CCGGATA
50775692 TCATTCAAAT
Statistics
Matches: 188, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 182 0.97
41 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:50783282 original size:57 final size:58
Alignment explanation
Indices: 50783205--50783331 Score: 158
Period size: 57 Copynumber: 2.2 Consensus size: 58
50783195 GGTGAATATA
*
50783205 GAGAAATGAGAAATATTTGGAAATTGTTAT-T-ATTTTCTCCAAAATGAAAATGAAAATG
1 GAGAAATGAGAAATATTTGGAAA-TG-AATGTGATTTTCTCCAAAATGAAAATGAAAATG
*
50783263 GAGAAAT-AG-AATCATTTGGAAATGAATGTGGTTTTCTCCAAAATGAAAATGAAAAT-
1 GAGAAATGAGAAAT-ATTTGGAAATGAATGTGATTTTCTCCAAAATGAAAATGAAAATG
*
50783319 GA-AAATGAAAAAT
1 GAGAAATGAGAAAT
50783332 GACCTAGAAA
Statistics
Matches: 61, Mismatches: 3, Indels: 11
0.81 0.04 0.15
Matches are distributed among these distances:
55 6 0.10
56 9 0.15
57 39 0.64
58 7 0.11
ACGTcount: A:0.47, C:0.06, G:0.18, T:0.29
Consensus pattern (58 bp):
GAGAAATGAGAAATATTTGGAAATGAATGTGATTTTCTCCAAAATGAAAATGAAAATG
Found at i:50783313 original size:6 final size:6
Alignment explanation
Indices: 50783302--50783329 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
50783292 GGTTTTCTCC
50783302 AAAATG AAAATG AAAATG AAAATG AAAA
1 AAAATG AAAATG AAAATG AAAATG AAAA
50783330 ATGACCTAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (6 bp):
AAAATG
Found at i:50783342 original size:57 final size:57
Alignment explanation
Indices: 50783237--50783346 Score: 143
Period size: 57 Copynumber: 1.9 Consensus size: 57
50783227 ATTGTTATTA
* ** *
50783237 TTTTCTCCAAAATGAAAATGAAAATGGAGAAATAGAATCATTTGGAAATGAATGTGG
1 TTTTCTCCAAAATGAAAATGAAAATGGAGAAATAAAATCACCTAGAAATGAATGTGG
*
50783294 TTTTCTCCAAAATGAAAATGAAAAT-GA-AAATGAAAAATGACCTAGAAATGAAT
1 TTTTCTCCAAAATGAAAATGAAAATGGAGAAAT--AAAATCACCTAGAAATGAAT
50783347 TTATGTTTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
55 4 0.09
56 2 0.04
57 40 0.87
ACGTcount: A:0.48, C:0.08, G:0.17, T:0.26
Consensus pattern (57 bp):
TTTTCTCCAAAATGAAAATGAAAATGGAGAAATAAAATCACCTAGAAATGAATGTGG
Found at i:50785765 original size:18 final size:19
Alignment explanation
Indices: 50785717--50785766 Score: 68
Period size: 18 Copynumber: 2.7 Consensus size: 19
50785707 GAGCTAAACA
*
50785717 AATCGAGTTATT-TGAGTT
1 AATCGAGTTATTCAGAGTT
*
50785735 AATCGAATTATTCAG-GTT
1 AATCGAGTTATTCAGAGTT
50785753 AATCGAGTTATTCA
1 AATCGAGTTATTCA
50785767 AGTCAACTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 27 0.96
19 1 0.04
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (19 bp):
AATCGAGTTATTCAGAGTT
Found at i:50785837 original size:9 final size:9
Alignment explanation
Indices: 50785820--50785874 Score: 65
Period size: 9 Copynumber: 6.1 Consensus size: 9
50785810 TGAGTTTTCA
*
50785820 AATTCGAAT
1 AATTCAAAT
* *
50785829 AACTCGAAT
1 AATTCAAAT
50785838 AATTCAAAT
1 AATTCAAAT
50785847 AATTCAAAT
1 AATTCAAAT
*
50785856 AACTCAAAT
1 AATTCAAAT
*
50785865 AATTCGAAT
1 AATTCAAAT
50785874 A
1 A
50785875 TCAAACTATA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 40 1.00
ACGTcount: A:0.51, C:0.15, G:0.05, T:0.29
Consensus pattern (9 bp):
AATTCAAAT
Found at i:50785847 original size:18 final size:18
Alignment explanation
Indices: 50785820--50785874 Score: 74
Period size: 18 Copynumber: 3.1 Consensus size: 18
50785810 TGAGTTTTCA
* *
50785820 AATTCGAATAACTCGAAT
1 AATTCAAATAATTCGAAT
*
50785838 AATTCAAATAATTCAAAT
1 AATTCAAATAATTCGAAT
*
50785856 AACTCAAATAATTCGAAT
1 AATTCAAATAATTCGAAT
50785874 A
1 A
50785875 TCAAACTATA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.51, C:0.15, G:0.05, T:0.29
Consensus pattern (18 bp):
AATTCAAATAATTCGAAT
Found at i:50785856 original size:27 final size:27
Alignment explanation
Indices: 50785820--50785874 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
50785810 TGAGTTTTCA
* *
50785820 AATTCGAATAACTCGAATAATTCAAAT
1 AATTCAAATAACTCAAATAATTCAAAT
*
50785847 AATTCAAATAACTCAAATAATTCGAAT
1 AATTCAAATAACTCAAATAATTCAAAT
50785874 A
1 A
50785875 TCAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.51, C:0.15, G:0.05, T:0.29
Consensus pattern (27 bp):
AATTCAAATAACTCAAATAATTCAAAT
Found at i:50786267 original size:20 final size:20
Alignment explanation
Indices: 50786228--50786267 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
50786218 TTTATTCCCA
*
50786228 AAACTTTTTATTTTCCCCCT
1 AAACTTTTTATTTTCACCCT
50786248 AAAC-TTTTATTTCTCACCCT
1 AAACTTTTTATTT-TCACCCT
50786268 TTACTCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.23, C:0.30, G:0.00, T:0.47
Consensus pattern (20 bp):
AAACTTTTTATTTTCACCCT
Found at i:50788297 original size:95 final size:96
Alignment explanation
Indices: 50788133--50788328 Score: 385
Period size: 95 Copynumber: 2.1 Consensus size: 96
50788123 ATGCATACAT
50788133 AGTCTATCATCCACTCAGGATTTAGGTAGGCCACACTATGAACATCACAAGTGAATAAATCTATA
1 AGTCTATCATCCACTCAGGATTTAGGTAGGCCACACTATGAACATCACAAGTGAATAAATCTATA
50788198 AATGAATTCAGGATGTATTCTTTTTGAATCC
66 AATGAATTCAGGATGTATTCTTTTTGAATCC
50788229 AGTCTATCATCCACTCAGGATTT-GGTAGGCCACACTATGAACATCACAAGTGAATAAATCTATA
1 AGTCTATCATCCACTCAGGATTTAGGTAGGCCACACTATGAACATCACAAGTGAATAAATCTATA
50788293 AATGAATTCAGGATGTATTCTTTTTGAATCC
66 AATGAATTCAGGATGTATTCTTTTTGAATCC
50788324 AGTCT
1 AGTCT
50788329 GATGTATTGT
Statistics
Matches: 100, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
95 77 0.77
96 23 0.23
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.32
Consensus pattern (96 bp):
AGTCTATCATCCACTCAGGATTTAGGTAGGCCACACTATGAACATCACAAGTGAATAAATCTATA
AATGAATTCAGGATGTATTCTTTTTGAATCC
Found at i:50798412 original size:24 final size:22
Alignment explanation
Indices: 50798320--50798413 Score: 77
Period size: 22 Copynumber: 4.2 Consensus size: 22
50798310 TTTCAATATT
50798320 TAATTAAATTAAT-TTTAAAAAA
1 TAATTAAATTAATATTT-AAAAA
* ** *
50798342 TAATAAAATGT-A-ATTTACTAT
1 TAATTAAAT-TAATATTTAAAAA
* *
50798363 TAATTACATTAATCTTTAAAAA
1 TAATTAAATTAATATTTAAAAA
50798385 TAATTAAATTAAATATTTAAAAAA
1 TAATTAAATT-AATATTT-AAAAA
50798409 TAATT
1 TAATT
50798414 GGTGTTAATT
Statistics
Matches: 54, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
20 1 0.02
21 10 0.19
22 26 0.48
23 7 0.13
24 10 0.19
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.41
Consensus pattern (22 bp):
TAATTAAATTAATATTTAAAAA
Found at i:50804990 original size:21 final size:22
Alignment explanation
Indices: 50804939--50804990 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 22
50804929 AATAAAGTCT
*
50804939 ATGTA-CAAATATCATCATCTC
1 ATGTATCATATATCATCATCTC
* *
50804960 ATGTTTTCATATATCAT-ATGTC
1 ATG-TATCATATATCATCATCTC
50804982 ATGTATCAT
1 ATGTATCAT
50804991 CATTTACTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 8 0.32
22 8 0.32
23 9 0.36
ACGTcount: A:0.33, C:0.17, G:0.08, T:0.42
Consensus pattern (22 bp):
ATGTATCATATATCATCATCTC
Done.