Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 108673976
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.31
Warning! 5040000 characters in sequence are not A, C, G, or T
File 155 of 333
Found at i:50806146 original size:19 final size:20
Alignment explanation
Indices: 50806122--50806159 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
50806112 TATCAACAAC
50806122 ATTTCAT-TTTCTACCATAA
1 ATTTCATATTTCTACCATAA
*
50806141 ATTTCATATTTCTAGCATA
1 ATTTCATATTTCTACCATA
50806160 TTCATCCATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.32, C:0.18, G:0.03, T:0.47
Consensus pattern (20 bp):
ATTTCATATTTCTACCATAA
Found at i:50814559 original size:25 final size:25
Alignment explanation
Indices: 50814519--50814590 Score: 65
Period size: 25 Copynumber: 2.9 Consensus size: 25
50814509 TAAGGCTCCC
50814519 CAAATAATTCGCCACATA-GGCTTTT
1 CAAATAATTCGCCACA-AGGGCTTTT
* * *
50814544 CAAATAATTTGGCACAAGGGCTTTA
1 CAAATAATTCGCCACAAGGGCTTTT
* * * *
50814569 CAGACAACTCGCCACAAAGGCT
1 CAAATAATTCGCCACAAGGGCT
50814591 CTGTTTGGTT
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
24 1 0.03
25 36 0.97
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.24
Consensus pattern (25 bp):
CAAATAATTCGCCACAAGGGCTTTT
Found at i:50823440 original size:107 final size:106
Alignment explanation
Indices: 50823237--50823473 Score: 272
Period size: 107 Copynumber: 2.2 Consensus size: 106
50823227 ACCTAAAATA
* ** * * *
50823237 ATAATAATATTAAGAATGCTAATAAATTATATAATATTTTATTAAATTGTATTAATAATTGTGTT
1 ATAATTATATTAAGAATATTATTAAATTATATAATATTTTATTAAATTATATTAATAATTATGTT
* *
50823302 AAAATATGATTAAATTATTTATTATGATTTTTATT-AATTCAT
66 AAAATATGATGAAATTATTTA-TATTATTTTTATTAAATT-AT
*
50823344 ATAATTATATTAAGAATATTATTAAATTATATATTATTTTATTAAATTATATTTAATAATAATTA
1 ATAATTATATTAAGAATATTATTAAATTATATAATATTTTATTAAATTATA--T--TAATAATTA
*
50823409 TGTTAAAATATGATGAAATTATTTA-CTT-TTTTTATTAAATTAT
62 TGTTAAAATATGATGAAATTATTTATATTATTTTTATTAAATTAT
*
50823452 AT--TTA-A-TAATAATATTATTAAA
1 ATAATTATATTAAGAATATTATTAAA
50823474 ATTTAATAAC
Statistics
Matches: 114, Mismatches: 11, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
104 15 0.13
105 1 0.01
106 3 0.03
107 45 0.39
108 12 0.11
109 6 0.05
111 32 0.28
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.50
Consensus pattern (106 bp):
ATAATTATATTAAGAATATTATTAAATTATATAATATTTTATTAAATTATATTAATAATTATGTT
AAAATATGATGAAATTATTTATATTATTTTTATTAAATTAT
Found at i:50823473 original size:58 final size:57
Alignment explanation
Indices: 50823344--50823475 Score: 185
Period size: 58 Copynumber: 2.3 Consensus size: 57
50823334 ATTAATTCAT
* *
50823344 ATAATTATATTAAGAATATTATTAAATTATATATTATTTTATTAAATTATATTTAATA
1 ATAATTATATTAA-AATATGATGAAATTATATATTATTTTATTAAATTATATTTAATA
* * *
50823402 ATAATTATGTTAAAATATGATGAAATTATTTACTTTTTTTATTAAATTATATTTAATA
1 ATAATTATATTAAAATATGATGAAATTATATA-TTATTTTATTAAATTATATTTAATA
50823460 ATAA-TATTATTAAAAT
1 ATAATTA-TATTAAAAT
50823476 TTAATAACAA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
57 18 0.27
58 48 0.73
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (57 bp):
ATAATTATATTAAAATATGATGAAATTATATATTATTTTATTAAATTATATTTAATA
Found at i:50823663 original size:16 final size:16
Alignment explanation
Indices: 50823642--50823677 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
50823632 TTAATTACTG
50823642 ATTACATCTCTATTCC
1 ATTACATCTCTATTCC
* *
50823658 ATTACATTTCTATTTC
1 ATTACATCTCTATTCC
50823674 ATTA
1 ATTA
50823678 TAGTCTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.28, C:0.22, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTACATCTCTATTCC
Found at i:50830510 original size:93 final size:93
Alignment explanation
Indices: 50830342--50830514 Score: 240
Period size: 93 Copynumber: 1.9 Consensus size: 93
50830332 CGCCCATAAG
* * *
50830342 CGAACTCGGACTCAAATCAATGAGCTCAGGCGTTCACATCCACAAGTGAACTCAGACTCAACTCA
1 CGAACTCGAACTCAAATCAACGAGCTCAGGCATTCACATCCACAAGTGAACTCAGACTCAACTCA
*
50830407 GCGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* * * * *
50830435 CGAACTCGAACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGAACTCAAATCAACGAGCTCAGG-CATTCACATCCACAAGTGAACTCAGACTCAACTC
*
50830499 AACGAGTTCGGATGCC
65 AACGAGCTCGGATGCC
50830515 CAAATATCCT
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
92 2 0.03
93 67 0.97
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGAACTCAAATCAACGAGCTCAGGCATTCACATCCACAAGTGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:50832400 original size:26 final size:26
Alignment explanation
Indices: 50832369--50832450 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
50832359 TGAAATTTCC
50832369 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
50832395 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
50832421 ATCATGGAACATTTATCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
50832447 ATCA
1 ATCA
50832451 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:50832914 original size:45 final size:45
Alignment explanation
Indices: 50832842--50832973 Score: 167
Period size: 45 Copynumber: 2.9 Consensus size: 45
50832832 ACGCTTTCAT
*
50832842 ATGATGTCATAGCATCTTTTAGGTATGGTCTTACTAATTCTT-ATA
1 ATGATGTCATAGCATCTTTTAGCTATGGTCTTACTAATT-TTAATA
* * * * *
50832887 ATGATGCCATAGCATCTTTCAACTATGGTCTTACTCATTTTAATC
1 ATGATGTCATAGCATCTTTTAGCTATGGTCTTACTAATTTTAATA
** *
50832932 ATGATGTCATAATATCTTTTAGCTATGGTCTTACTCATTTTA
1 ATGATGTCATAGCATCTTTTAGCTATGGTCTTACTAATTTTA
50832974 GGAATATAGC
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
44 2 0.03
45 73 0.97
ACGTcount: A:0.27, C:0.17, G:0.13, T:0.44
Consensus pattern (45 bp):
ATGATGTCATAGCATCTTTTAGCTATGGTCTTACTAATTTTAATA
Found at i:50839437 original size:25 final size:25
Alignment explanation
Indices: 50839404--50839457 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
50839394 AAGTGTATAC
* **
50839404 ATAGTGTTAAAAATATGTACATAAT
1 ATAGCGTTAAAAATACATACATAAT
50839429 ATAGCGTTAAAAATACATACATAAT
1 ATAGCGTTAAAAATACATACATAAT
50839454 ATAG
1 ATAG
50839458 TTATTAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.50, C:0.07, G:0.11, T:0.31
Consensus pattern (25 bp):
ATAGCGTTAAAAATACATACATAAT
Found at i:50839522 original size:29 final size:30
Alignment explanation
Indices: 50839463--50839522 Score: 68
Period size: 29 Copynumber: 2.0 Consensus size: 30
50839453 TATAGTTATT
* *
50839463 AAAAAATATATACATAAGATAATATGCAAG
1 AAAAAATATATAAATAAGATAATATGAAAG
* * *
50839493 AAAAAA-ATATAAATAATATAGTATTAAAG
1 AAAAAATATATAAATAAGATAATATGAAAG
50839522 A
1 A
50839523 TATATACATA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 19 0.76
30 6 0.24
ACGTcount: A:0.63, C:0.03, G:0.08, T:0.25
Consensus pattern (30 bp):
AAAAAATATATAAATAAGATAATATGAAAG
Found at i:50839533 original size:29 final size:29
Alignment explanation
Indices: 50839441--50839543 Score: 65
Period size: 31 Copynumber: 3.6 Consensus size: 29
50839431 AGCGTTAAAA
*
50839441 ATACAT-ACATAATATAGTTATTAAAAAATAT
1 ATACATAAGATAATATAG-TATT--AAAATAT
* **
50839472 ATACATAAGATAATAT-GCAAGAAAA-A-
1 ATACATAAGATAATATAGTATTAAAATAT
*
50839498 A-ATATAA-ATAATATAGTATTAAAGATAT
1 ATACATAAGATAATATAGTATTAAA-ATAT
*
50839526 ATACATAATATATATATA
1 ATACATAAGATA-ATATA
50839544 AAAAAATCAT
Statistics
Matches: 55, Mismatches: 9, Indels: 16
0.69 0.11 0.20
Matches are distributed among these distances:
24 7 0.13
25 10 0.18
26 2 0.04
27 2 0.04
28 5 0.09
29 5 0.09
30 4 0.07
31 12 0.22
32 8 0.15
ACGTcount: A:0.57, C:0.05, G:0.06, T:0.32
Consensus pattern (29 bp):
ATACATAAGATAATATAGTATTAAAATAT
Found at i:50839542 original size:15 final size:15
Alignment explanation
Indices: 50839522--50839572 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
50839512 AGTATTAAAG
50839522 ATATATACATAATAT
1 ATATATACATAATAT
* *
50839537 ATATATA-AAAAAAT
1 ATATATACATAATAT
50839551 CATATATACATGACATAT
1 -ATATATACAT-A-ATAT
50839569 ATAT
1 ATAT
50839573 TAGCAACAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
14 5 0.18
15 14 0.50
16 1 0.04
17 5 0.18
18 3 0.11
ACGTcount: A:0.55, C:0.08, G:0.02, T:0.35
Consensus pattern (15 bp):
ATATATACATAATAT
Found at i:50839662 original size:24 final size:25
Alignment explanation
Indices: 50839633--50839762 Score: 109
Period size: 24 Copynumber: 5.4 Consensus size: 25
50839623 ACGTACATAT
*
50839633 ATATATAAATAATAATGGTATTAGAA
1 ATATAT-AATAATAATAGTATTAGAA
*
50839659 ATATACAAT-AT-ATAGTATTAGAA
1 ATATATAATAATAATAGTATTAGAA
*
50839682 ATATATACATAA-AATAGTA-TAAAA
1 ATATATA-ATAATAATAGTATTAGAA
50839706 ATATAT-ATAACTAAT-GATATTA-AA
1 ATATATAATAA-TAATAG-TATTAGAA
50839730 ATATATACATAATAATA-TA-TA-AA
1 ATATATA-ATAATAATAGTATTAGAA
*
50839753 AAATATAATA
1 ATATATAATA
50839763 TTAAAAAAAT
Statistics
Matches: 89, Mismatches: 5, Indels: 24
0.75 0.04 0.20
Matches are distributed among these distances:
22 7 0.08
23 28 0.31
24 29 0.33
25 16 0.18
26 9 0.10
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (25 bp):
ATATATAATAATAATAGTATTAGAA
Found at i:50839715 original size:22 final size:25
Alignment explanation
Indices: 50839633--50839916 Score: 137
Period size: 23 Copynumber: 11.7 Consensus size: 25
50839623 ACGTACATAT
* * *
50839633 ATATATAAATAATAATGGTATTAGA
1 ATATATACATAATAATAGTATTAAA
50839658 A-ATATAC--AATATATAGTATTAGAA
1 ATATATACATAATA-ATAGTATTA-AA
50839682 ATATATACATAA-AATAGTA-TAAA
1 ATATATACATAATAATAGTATTAAA
*
50839705 A-ATATATATAACTAAT-GATATTAAA
1 ATATATACATAA-TAATAG-TATTAAA
50839730 ATATATACATAATAATA-TA-TAAA
1 ATATATACATAATAATAGTATTAAA
* *
50839753 AAATATA-ATATTAA-A--A--AAA
1 ATATATACATAATAATAGTATTAAA
* * *
50839772 TATATGTACATAA-CATA-TA-AAAA
1 -ATATATACATAATAATAGTATTAAA
50839795 ATATATACATAAT-ATAGTATTAAA
1 ATATATACATAATAATAGTATTAAA
* *
50839819 ATATTTACATAATATATACATATTAGAA
1 ATATATACATAATA-ATA-GTATTA-AA
* * * *
50839847 ATAAAAAACGACTATTAATAATATTACATAA
1 AT-ATATAC-A-TAATAATAGTATT--A-AA
50839878 ATATATACAT-AT-ATA-TATTAAA
1 ATATATACATAATAATAGTATTAAA
50839900 GATATATACAT-ATAATA
1 -ATATATACATAATAATA
50839917 AAACATATAC
Statistics
Matches: 206, Mismatches: 23, Indels: 61
0.71 0.08 0.21
Matches are distributed among these distances:
19 3 0.01
20 7 0.03
21 5 0.02
22 36 0.17
23 40 0.19
24 34 0.17
25 26 0.13
26 16 0.08
27 8 0.04
28 5 0.02
29 9 0.04
30 8 0.04
31 9 0.04
ACGTcount: A:0.57, C:0.05, G:0.04, T:0.34
Consensus pattern (25 bp):
ATATATACATAATAATAGTATTAAA
Found at i:50839760 original size:16 final size:16
Alignment explanation
Indices: 50839741--50839775 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
50839731 TATATACATA
50839741 ATAATA-TATAAAAAAT
1 ATAATATTA-AAAAAAT
50839757 ATAATATTAAAAAAAT
1 ATAATATTAAAAAAAT
50839773 ATA
1 ATA
50839776 TGTACATAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
ATAATATTAAAAAAAT
Found at i:50839808 original size:11 final size:11
Alignment explanation
Indices: 50839729--50839840 Score: 57
Period size: 11 Copynumber: 10.1 Consensus size: 11
50839719 ATGATATTAA
50839729 AATATATACAT
1 AATATATACAT
* *
50839740 AATAATATATAA
1 AAT-ATATACAT
*
50839752 AAAATATA-AT
1 AATATATACAT
* * * *
50839762 ATTAAAAAAAT
1 AATATATACAT
*
50839773 -ATATGTACAT
1 AATATATACAT
* * *
50839783 AACATATAAAA
1 AATATATACAT
50839794 AATATATACAT
1 AATATATACAT
* *
50839805 AATATAGTATTAA
1 AATATA-TA-CAT
*
50839818 AATATTTACAT
1 AATATATACAT
50839829 AATATATACAT
1 AATATATACAT
50839840 A
1 A
50839841 TTAGAAATAA
Statistics
Matches: 70, Mismatches: 26, Indels: 10
0.66 0.25 0.09
Matches are distributed among these distances:
10 10 0.14
11 42 0.60
12 12 0.17
13 6 0.09
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (11 bp):
AATATATACAT
Found at i:50840056 original size:25 final size:23
Alignment explanation
Indices: 50839953--50840078 Score: 93
Period size: 23 Copynumber: 5.4 Consensus size: 23
50839943 AATAAGGATA
*
50839953 ATATAAAAATATATACATGAA-AT
1 ATATAAAAACATATACAT-AATAT
* *
50839976 AGTAAAAAAAAATATA-ACTAATA-
1 A-TATAAAAACATATACA-TAATAT
*
50839999 ATACTAAAAATATATACATAATAT
1 ATA-TAAAAACATATACATAATAT
50840023 ATATAAAAACATATACGATATATAT
1 ATATAAAAACATATAC-ATA-ATAT
*
50840048 ATATTAAAA-ATGATA-ATAATAT
1 ATATAAAAACAT-ATACATAATAT
*
50840070 A-AAAAAAAC
1 ATATAAAAAC
50840079 TATTAATACA
Statistics
Matches: 85, Mismatches: 8, Indels: 21
0.75 0.07 0.18
Matches are distributed among these distances:
21 5 0.06
22 7 0.08
23 35 0.41
24 23 0.27
25 15 0.18
ACGTcount: A:0.63, C:0.06, G:0.03, T:0.29
Consensus pattern (23 bp):
ATATAAAAACATATACATAATAT
Found at i:50840176 original size:18 final size:18
Alignment explanation
Indices: 50840151--50840194 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
50840141 ATACTAGTAC
50840151 TAATAATATTAATAATGAATA
1 TAATAATA-T-AT-ATGAATA
*
50840172 TAATAATATATATGCATA
1 TAATAATATATATGAATA
50840190 TAATA
1 TAATA
50840195 GTAAAAAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 11 0.50
19 2 0.09
20 1 0.05
21 8 0.36
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.39
Consensus pattern (18 bp):
TAATAATATATATGAATA
Found at i:50841041 original size:21 final size:20
Alignment explanation
Indices: 50841003--50841045 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
50840993 AAAAATCACC
*
50841003 TTTGTTTCTGATTTTGATCTT
1 TTTGTTTCTGATTCTGAT-TT
50841024 TTTGTTTTCTGA-TCTGATTT
1 TTTG-TTTCTGATTCTGATTT
50841044 TT
1 TT
50841046 GTGGTGTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 9 0.45
22 7 0.35
ACGTcount: A:0.09, C:0.09, G:0.14, T:0.67
Consensus pattern (20 bp):
TTTGTTTCTGATTCTGATTT
Found at i:50842123 original size:87 final size:88
Alignment explanation
Indices: 50841829--50842147 Score: 375
Period size: 87 Copynumber: 3.6 Consensus size: 88
50841819 CAATCTTTAT
* * * *
50841829 CCTCGGCGTGTGACCTGAGGCTCAACTCACCTATCT-CAATATGAGTTGACTTTTTTTGAAAAAC
1 CCTCGGCATGTGACCCGAGGCTCAACTCACCTCT-TGAAATATGAGTTGA---TTTTTGAAAAAC
50841893 A-AATATTAAAAACA-AATTTTGAAAATA
62 AGAA-ATTAAAAACAGAA-TTTGAAAATA
* * * *
50841920 CCTCAGCATATGGCCCGAGGCTCAACTCACCT-TTCGCAATATGAGTTGATTTTTG-AAAACAGA
1 CCTCGGCATGTGACCCGAGGCTCAACTCACCTCTT-GAAATATGAGTTGATTTTTGAAAAACAGA
* *
50841983 CATTAAAAACAGAAATTG-AAATA
65 AATTAAAAACAGAATTTGAAAATA
** * *
50842006 CCTCGGTGTGTGACCCAAGGCTCAACTCACCTCTTGAAATATGAGTTGATTTTTGAAAAATAGAA
1 CCTCGGCATGTGACCCGAGGCTCAACTCACCTCTTGAAATATGAGTTGATTTTTGAAAAACAGAA
50842071 ATT-AAAACAGAATTTGAAAATA
66 ATTAAAAACAGAATTTGAAAATA
*
50842093 CCTCGGCATGTGACCCGAGGCTCAACTCACCTC-TCACAATATGAGTTGATTTTTG
1 CCTCGGCATGTGACCCGAGGCTCAACTCACCTCTTGA-AATATGAGTTGATTTTTG
50842148 GAATAACTGA
Statistics
Matches: 199, Mismatches: 21, Indels: 20
0.83 0.09 0.08
Matches are distributed among these distances:
86 64 0.32
87 84 0.42
88 9 0.05
89 1 0.01
90 1 0.01
91 40 0.20
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (88 bp):
CCTCGGCATGTGACCCGAGGCTCAACTCACCTCTTGAAATATGAGTTGATTTTTGAAAAACAGAA
ATTAAAAACAGAATTTGAAAATA
Found at i:50842135 original size:173 final size:175
Alignment explanation
Indices: 50841829--50842147 Score: 459
Period size: 173 Copynumber: 1.8 Consensus size: 175
50841819 CAATCTTTAT
** *
50841829 CCTCGGCGTGTGACCTGAGGCTCAACTCACCTATCTCAATATGAGTTGACTTTTTTTGAAAAACA
1 CCTCGGCGTGTGACCCAAGGCTCAACTCACCTATCTAAATATGAGTTGA--TTTTTTGAAAAACA
* * *
50841894 AATATTAAAAACAAATTTTGAAAATACCTCAGCATATGGCCCGAGGCTCAACTCACCTTTCGCAA
64 AATATTAAAAACAAATTTTGAAAATACCTCAGCATATGACCCGAGGCTCAACTCACCTCTCACAA
50841959 TATGAGTTGATTTTTGAAAACAGACATTAAAAACAGAAATTGAAATA
129 TATGAGTTGATTTTTGAAAACAGACATTAAAAACAGAAATTGAAATA
* * *
50842006 CCTCGGTGTGTGACCCAAGGCTCAACTCACCTCT-TGAAATATGAGTTGA-TTTTTGAAAAATAG
1 CCTCGGCGTGTGACCCAAGGCTCAACTCACCTATCT-AAATATGAGTTGATTTTTTGAAAAACA-
* *
50842069 AA-ATT-AAAACAGAA-TTTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCACA
64 AATATTAAAAACA-AATTTTGAAAATACCTCAGCATATGACCCGAGGCTCAACTCACCTCTCACA
50842131 ATATGAGTTGATTTTTG
128 ATATGAGTTGATTTTTG
50842148 GAATAACTGA
Statistics
Matches: 128, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
173 66 0.52
174 17 0.13
175 2 0.02
176 1 0.01
177 42 0.33
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (175 bp):
CCTCGGCGTGTGACCCAAGGCTCAACTCACCTATCTAAATATGAGTTGATTTTTTGAAAAACAAA
TATTAAAAACAAATTTTGAAAATACCTCAGCATATGACCCGAGGCTCAACTCACCTCTCACAATA
TGAGTTGATTTTTGAAAACAGACATTAAAAACAGAAATTGAAATA
Found at i:50853817 original size:25 final size:25
Alignment explanation
Indices: 50853730--50853933 Score: 131
Period size: 25 Copynumber: 8.1 Consensus size: 25
50853720 AACGATATAT
50853730 AAATATATACAT-ATAT-GTATT-A
1 AAATATATACATAATATAGTATTAA
* *
50853752 AAATATATACGTAATAATAAG-AATAA
1 AAATATATACATAAT-AT-AGTATTAA
*
50853778 AAAGTGTATAC-----ATAGTATTAA
1 AAA-TATATACATAATATAGTATTAA
**
50853799 AAATATATACATAATATAGCGTTAA
1 AAATATATACATAATATAGTATTAA
*
50853824 AAATACATACATAATATAGTTATTAAA
1 AAATATATACATAATATAG-TATT-AA
* **
50853851 AAATATATACATAAGATAATATGCAAGAAAA
1 AAATATATACAT-A-AT-ATA-G-TA-TTAA
*
50853882 AAATATATAAATAATATAGTATTAA
1 AAATATATACATAATATAGTATTAA
* *
50853907 AGATATATACATAATATA-TATAAA
1 AAATATATACATAATATAGTATTAA
50853931 AAA
1 AAA
50853934 ATCATATATA
Statistics
Matches: 140, Mismatches: 23, Indels: 36
0.70 0.12 0.18
Matches are distributed among these distances:
20 8 0.06
21 9 0.06
22 11 0.08
23 2 0.01
24 9 0.06
25 46 0.33
26 8 0.06
27 20 0.14
28 4 0.03
29 4 0.03
30 4 0.03
31 15 0.11
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.31
Consensus pattern (25 bp):
AAATATATACATAATATAGTATTAA
Found at i:50853927 original size:13 final size:13
Alignment explanation
Indices: 50853909--50853956 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
50853899 AGTATTAAAG
50853909 ATATATACATAAT
1 ATATATACATAAT
* *
50853922 ATATATAAAAAAAT
1 ATATAT-ACATAAT
*
50853936 CATATATACATGAT
1 -ATATATACATAAT
50853950 ATATATA
1 ATATATA
50853957 TTAGCAACAA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
13 13 0.46
14 9 0.32
15 6 0.21
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.35
Consensus pattern (13 bp):
ATATATACATAAT
Found at i:50854094 original size:22 final size:25
Alignment explanation
Indices: 50854012--50854137 Score: 106
Period size: 24 Copynumber: 5.2 Consensus size: 25
50854002 ATACGTACAT
* ** *
50854012 ATATATAAATAATAACGGTATTAGA
1 ATATATACATAATAATAGTATTAAA
50854037 A-ATATAC--AATATATAGTATTAGAA
1 ATATATACATAATA-ATAGTATTA-AA
50854061 ATATATACATAA-AATAGTA-TAAA
1 ATATATACATAATAATAGTATTAAA
*
50854084 A-ATATATATAACTAAT-GATATTAAA
1 ATATATACATAA-TAATAG-TATTAAA
*
50854109 ATATATACATAATAATA-TATAAAA
1 ATATATACATAATAATAGTATTAAA
50854133 ATATA
1 ATATA
50854138 ATATTAAAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 23
0.73 0.06 0.20
Matches are distributed among these distances:
22 13 0.16
23 11 0.13
24 25 0.30
25 22 0.27
26 10 0.12
27 2 0.02
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (25 bp):
ATATATACATAATAATAGTATTAAA
Found at i:50854129 original size:64 final size:64
Alignment explanation
Indices: 50854069--50854199 Score: 151
Period size: 64 Copynumber: 2.0 Consensus size: 64
50854059 AAATATATAC
* * *
50854069 ATAAAATAGTATAAAAATATATATA-ACTAATGATAT-TAAAATATATACATAATAATATATAAA
1 ATAAAATAGTAAAAAAATATATATACA-TAA-CATATAAAAAATATATACATAATAATATATAAA
50854132 A
64 A
* * * *
50854133 ATATAATATTAAAAAAATATATGTACATAACATATAAAAAATATATACATAAT-ATAGTATTAAA
1 ATAAAATAGTAAAAAAATATATATACATAACATATAAAAAATATATACATAATAATA-TATAAAA
50854197 ATA
1 ATA
50854200 TTTACATAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
63 7 0.12
64 49 0.86
65 1 0.02
ACGTcount: A:0.60, C:0.04, G:0.03, T:0.33
Consensus pattern (64 bp):
ATAAAATAGTAAAAAAATATATATACATAACATATAAAAAATATATACATAATAATATATAAAA
Found at i:50854140 original size:18 final size:16
Alignment explanation
Indices: 50854120--50854153 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
50854110 TATATACATA
*
50854120 ATAATA-TATAAAAAT
1 ATAATATTAAAAAAAT
50854135 ATAATATTAAAAAAAT
1 ATAATATTAAAAAAAT
50854151 ATA
1 ATA
50854154 TGTACATAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
ATAATATTAAAAAAAT
Found at i:50854176 original size:22 final size:22
Alignment explanation
Indices: 50854059--50854214 Score: 119
Period size: 24 Copynumber: 6.9 Consensus size: 22
50854049 ATAGTATTAG
50854059 AAATATATACATAAAATAGTATAAA
1 AAATATATACAT--AATA-TATAAA
*
50854084 AATATATATA-ACTAATGATAT-TA
1 AA-ATATATACA-TAAT-ATATAAA
*
50854107 AAATATATACATAATAATATATA
1 AAATATATACATAAT-ATATAAA
50854130 AAA-ATATA-AT-AT-TA-AAA
1 AAATATATACATAATATATAAA
*
50854147 AAATATATGTACATAACATATAAA
1 AAATATA--TACATAATATATAAA
*
50854171 AAATATATACATAATATAGTATTA
1 AAATATATACATAATATA-TA-AA
*
50854195 AAATATTTACATAATATATA
1 AAATATATACATAATATATA
50854215 CATATTATGT
Statistics
Matches: 110, Mismatches: 7, Indels: 30
0.75 0.05 0.20
Matches are distributed among these distances:
17 5 0.05
18 5 0.05
20 4 0.04
21 4 0.04
22 31 0.28
23 15 0.14
24 34 0.31
25 4 0.04
26 8 0.07
ACGTcount: A:0.59, C:0.04, G:0.03, T:0.34
Consensus pattern (22 bp):
AAATATATACATAATATATAAA
Found at i:50854186 original size:11 final size:11
Alignment explanation
Indices: 50854108--50854218 Score: 57
Period size: 11 Copynumber: 10.1 Consensus size: 11
50854098 ATGATATTAA
50854108 AATATATACAT
1 AATATATACAT
*
50854119 AATA-ATATAT
1 AATATATACAT
*
50854129 AAAAATATA-AT
1 -AATATATACAT
* * * *
50854140 ATTAAAAAAAT
1 AATATATACAT
*
50854151 -ATATGTACAT
1 AATATATACAT
* * *
50854161 AACATATAAAA
1 AATATATACAT
50854172 AATATATACAT
1 AATATATACAT
* *
50854183 AATATAGTATTAA
1 AATATA-TA-CAT
*
50854196 AATATTTACAT
1 AATATATACAT
50854207 AATATATACAT
1 AATATATACAT
50854218 A
1 A
50854219 TTATGTAATA
Statistics
Matches: 70, Mismatches: 24, Indels: 12
0.66 0.23 0.11
Matches are distributed among these distances:
10 14 0.20
11 43 0.61
12 7 0.10
13 6 0.09
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (11 bp):
AATATATACAT
Found at i:50854952 original size:25 final size:25
Alignment explanation
Indices: 50854918--50854967 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
50854908 ATCGGTAAAA
50854918 ATACCTAATAGTCATAAGTACATGT
1 ATACCTAATAGTCATAAGTACATGT
50854943 ATACCTAATAGTCATAAGTACATGT
1 ATACCTAATAGTCATAAGTACATGT
50854968 TAGAGTGTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (25 bp):
ATACCTAATAGTCATAAGTACATGT
Found at i:50855331 original size:19 final size:19
Alignment explanation
Indices: 50855309--50855366 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
50855299 AATTTAAGTA
50855309 ATATAATGTTATTTATATG
1 ATATAATGTTATTTATATG
* *
50855328 ATATGATG--A-TTATTATC
1 ATATAATGTTATTTA-TATG
50855345 AT-TAATGTTATTTATATG
1 ATATAATGTTATTTATATG
50855363 ATAT
1 ATAT
50855367 GAAGATTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
16 7 0.23
17 6 0.20
18 6 0.20
19 11 0.37
ACGTcount: A:0.36, C:0.02, G:0.10, T:0.52
Consensus pattern (19 bp):
ATATAATGTTATTTATATG
Found at i:50855351 original size:35 final size:35
Alignment explanation
Indices: 50855312--50855378 Score: 125
Period size: 35 Copynumber: 1.9 Consensus size: 35
50855302 TTAAGTAATA
*
50855312 TAATGTTATTTATATGATATGATGATTATTATCAT
1 TAATGTTATTTATATGATATGAAGATTATTATCAT
50855347 TAATGTTATTTATATGATATGAAGATTATTAT
1 TAATGTTATTTATATGATATGAAGATTATTAT
50855379 TATGAAATCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.36, C:0.01, G:0.12, T:0.51
Consensus pattern (35 bp):
TAATGTTATTTATATGATATGAAGATTATTATCAT
Found at i:50857136 original size:40 final size:40
Alignment explanation
Indices: 50857092--50857315 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
50857082 AAGTGAATAT
* * * * **
50857092 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAA
50857132 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* *
50857172 ATCCGAGTTAAGTCCCGAAGGAATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
*
50857212 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * **
50857252 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* *
50857291 ATCCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
50857316 TGAACGAGGA
Statistics
Matches: 166, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 35 0.21
40 131 0.79
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:50865369 original size:19 final size:19
Alignment explanation
Indices: 50865347--50865404 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
50865337 AATTTAAGTA
50865347 ATATAATGTTATTTATATG
1 ATATAATGTTATTTATATG
* *
50865366 ATATGATG--A-TTATTATC
1 ATATAATGTTATTTA-TATG
*
50865383 AT-TAATTTTATTTATATG
1 ATATAATGTTATTTATATG
50865401 ATAT
1 ATAT
50865405 GAAGACTATT
Statistics
Matches: 29, Mismatches: 5, Indels: 10
0.66 0.11 0.23
Matches are distributed among these distances:
16 6 0.21
17 6 0.21
18 6 0.21
19 11 0.38
ACGTcount: A:0.36, C:0.02, G:0.09, T:0.53
Consensus pattern (19 bp):
ATATAATGTTATTTATATG
Found at i:50865394 original size:35 final size:35
Alignment explanation
Indices: 50865350--50865416 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
50865340 TTAAGTAATA
* *
50865350 TAATGTTATTTATATGATATGATGATTATTATCAT
1 TAATGTTATTTATATGATATGAAGACTATTATCAT
*
50865385 TAATTTTATTTATATGATATGAAGACTATTAT
1 TAATGTTATTTATATGATATGAAGACTATTAT
50865417 TATGAAATCT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.36, C:0.03, G:0.10, T:0.51
Consensus pattern (35 bp):
TAATGTTATTTATATGATATGAAGACTATTATCAT
Found at i:50867262 original size:23 final size:23
Alignment explanation
Indices: 50867227--50867298 Score: 78
Period size: 23 Copynumber: 3.1 Consensus size: 23
50867217 AAAAAAATAT
50867227 ATATATA-ACTAATAATATTAAAA
1 ATATATACA-TAATAATATTAAAA
50867250 ATATATACATAAT-ATATATAAAA
1 ATATATACATAATAATAT-TAAAA
*
50867273 ACATATACGAT-ATATATATTAAAA
1 ATATATAC-ATAATA-ATATTAAAA
50867297 AT
1 AT
50867299 GATAATAATA
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
22 4 0.10
23 25 0.60
24 9 0.21
25 4 0.10
ACGTcount: A:0.58, C:0.06, G:0.01, T:0.35
Consensus pattern (23 bp):
ATATATACATAATAATATTAAAA
Found at i:50867289 original size:25 final size:22
Alignment explanation
Indices: 50867236--50867297 Score: 79
Period size: 23 Copynumber: 2.6 Consensus size: 22
50867226 TATATATAAC
*
50867236 TAATAATATTAAAAATATATACA
1 TAAT-ATATTAAAAACATATACA
50867259 TAATATATATAAAAACATATACGA
1 TAATATAT-TAAAAACATATAC-A
50867283 TATATATATTAAAAA
1 TA-ATATATTAAAAA
50867298 TGATAATAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
22 4 0.11
23 16 0.46
24 9 0.26
25 6 0.17
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.34
Consensus pattern (22 bp):
TAATATATTAAAAACATATACA
Found at i:50867408 original size:3 final size:3
Alignment explanation
Indices: 50867393--50867434 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
50867383 ATACTAGTAC
* *
50867393 TAA TAA TAT TAA TAA TGAA T-A TAA TAA TAG TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA
50867435 ATATATATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
2 2 0.06
3 28 0.85
4 3 0.09
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:50870799 original size:24 final size:25
Alignment explanation
Indices: 50870755--50870802 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
50870745 AAAAAAAATT
*
50870755 ATATTTGTTAAAGAATGTTAAAAAC
1 ATATTTGTTAAAGAATATTAAAAAC
50870780 ATATTTG-TAAA-AATTATTAAAAA
1 ATATTTGTTAAAGAA-TATTAAAAA
50870803 AATGATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 2 0.10
24 12 0.57
25 7 0.33
ACGTcount: A:0.52, C:0.02, G:0.08, T:0.38
Consensus pattern (25 bp):
ATATTTGTTAAAGAATATTAAAAAC
Found at i:50875710 original size:28 final size:28
Alignment explanation
Indices: 50875672--50875725 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
50875662 AAATTACAGC
50875672 ATTATTGTTGTATTATTATCATACCATT
1 ATTATTGTTGTATTATTATCATACCATT
50875700 ATTATTGTTGTATTATTATCATACCA
1 ATTATTGTTGTATTATTATCATACCA
50875726 ACTTACATAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.07, T:0.52
Consensus pattern (28 bp):
ATTATTGTTGTATTATTATCATACCATT
Found at i:50875998 original size:30 final size:30
Alignment explanation
Indices: 50875964--50876024 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
50875954 TCCTTAACTC
50875964 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
50875994 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
50876024 A
1 A
50876025 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:50886505 original size:40 final size:40
Alignment explanation
Indices: 50886428--50886605 Score: 279
Period size: 40 Copynumber: 4.5 Consensus size: 40
50886418 AAACCAAGTA
* *
50886428 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCACTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCACACAAATG
* *
50886467 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
50886507 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
*
50886547 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
*
50886587 CCTCCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
50886606 TTATCATCCG
Statistics
Matches: 129, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 14 0.11
40 115 0.89
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:50890241 original size:25 final size:25
Alignment explanation
Indices: 50890202--50890302 Score: 184
Period size: 25 Copynumber: 4.0 Consensus size: 25
50890192 CAGCAAGACG
50890202 TAGGGTCGACTTGGATTAGTTTGGA
1 TAGGGTCGACTTGGATTAGTTTGGA
* *
50890227 TACGATCGACTTGGATTAGTTTGGA
1 TAGGGTCGACTTGGATTAGTTTGGA
50890252 TAGGGTCGACTTGGATTAGTTTGGA
1 TAGGGTCGACTTGGATTAGTTTGGA
50890277 TAGGGTCGACTTGGATTAGTTTGGA
1 TAGGGTCGACTTGGATTAGTTTGGA
50890302 T
1 T
50890303 CATCGGAGTG
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 72 1.00
ACGTcount: A:0.21, C:0.09, G:0.34, T:0.37
Consensus pattern (25 bp):
TAGGGTCGACTTGGATTAGTTTGGA
Found at i:50891015 original size:25 final size:25
Alignment explanation
Indices: 50890969--50891016 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
50890959 TTATAATATG
* * * *
50890969 AAAATGACTATTTTGCCTCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
50890994 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
50891017 GTTTAATTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:50891077 original size:20 final size:19
Alignment explanation
Indices: 50891044--50891118 Score: 75
Period size: 20 Copynumber: 3.9 Consensus size: 19
50891034 ATACGTGGGA
50891044 TATGATAT--ACATGATTG
1 TATGATATGCACATGATTG
*
50891061 ATATGATATGCACATGACATG
1 -TATGATATGCACATGA-TTG
*
50891082 TATAATATGCACATGATATG
1 TATGATATGCACATGAT-TG
50891102 TATGGA-ATGCACATGAT
1 TAT-GATATGCACATGAT
50891119 GTAATCATAA
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
18 8 0.17
20 37 0.77
21 3 0.06
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.33
Consensus pattern (19 bp):
TATGATATGCACATGATTG
Found at i:50891210 original size:26 final size:26
Alignment explanation
Indices: 50891168--50891303 Score: 190
Period size: 26 Copynumber: 5.3 Consensus size: 26
50891158 GAGGAAGTGC
50891168 AAAAGGGC-TATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
50891193 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
50891219 AAAAGGGTTTATGCCTCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
50891245 AAAAGGGCTTATGCCCCATTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
50891271 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
50891294 AAAAGAGGCT
1 AAAAG-GGCT
50891304 AGGCCTTCAG
Statistics
Matches: 99, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 15 0.15
26 72 0.73
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:50910942 original size:23 final size:24
Alignment explanation
Indices: 50910908--50910952 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
50910898 TAGATCTATT
*
50910908 TTTTGTTGTATTC-ATAGATGATA
1 TTTTGTTGTATTCGAGAGATGATA
50910931 TTTTGATT-TATTCGAGAGATGA
1 TTTTG-TTGTATTCGAGAGATGA
50910953 AACTGAGCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.27, C:0.04, G:0.20, T:0.49
Consensus pattern (24 bp):
TTTTGTTGTATTCGAGAGATGATA
Found at i:50914447 original size:43 final size:43
Alignment explanation
Indices: 50914399--50914545 Score: 156
Period size: 43 Copynumber: 3.4 Consensus size: 43
50914389 ACCGAGATAT
* *
50914399 GATTACATGTAAGACCATGTTTGGGACATTTGCATTGTATTGA
1 GATTACATGTAAGACCATGTTTGGGACATTGGCATCGTATTGA
* * *
50914442 GATTACGTGTAAGACCAT-TTCTGGGACATTGGCATCGTTAAT-C
1 GATTACATGTAAGACCATGTT-TGGGACATTGGCATCG-TATTGA
* * * *
50914485 GATTTCATGTAAGACCCTGTTTGGGACAATGGCATCG-ATATGT
1 GATTACATGTAAGACCATGTTTGGGACATTGGCATCGTAT-TGA
*
50914528 GATAACATGTAAGACCAT
1 GATTACATGTAAGACCAT
50914546 ATCTGGGATA
Statistics
Matches: 85, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
41 1 0.01
42 3 0.04
43 76 0.89
44 5 0.06
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.33
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTTTGGGACATTGGCATCGTATTGA
Found at i:50914551 original size:86 final size:85
Alignment explanation
Indices: 50914399--50914561 Score: 211
Period size: 86 Copynumber: 1.9 Consensus size: 85
50914389 ACCGAGATAT
* * * * * *
50914399 GATTACATGTAAGACCATGTTTGGGACATTTGCATTGTATTGAGATTACGTGTAAGACCATTTCT
1 GATTACATGTAAGACCATGTTTGGGACAATGGCATCGTATTGAGATAACATGTAAGACCATATCT
50914464 GGGACATTGGCATCGTTAATC
66 GGGACA-TGGCATCGTTAATC
* * *
50914485 GATTTCATGTAAGACCCTGTTTGGGACAATGGCATCG-ATATGTGATAACATGTAAGACCATATC
1 GATTACATGTAAGACCATGTTTGGGACAATGGCATCGTAT-TGAGATAACATGTAAGACCATATC
*
50914549 TGGGATATGGCAT
65 TGGGACATGGCAT
50914562 TGTATGAGCT
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
85 8 0.12
86 58 0.88
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (85 bp):
GATTACATGTAAGACCATGTTTGGGACAATGGCATCGTATTGAGATAACATGTAAGACCATATCT
GGGACATGGCATCGTTAATC
Found at i:50914553 original size:43 final size:42
Alignment explanation
Indices: 50914398--50914567 Score: 146
Period size: 43 Copynumber: 4.0 Consensus size: 42
50914388 TACCGAGATA
* * * *
50914398 TGATTACATGTAAGACCATGTTTGGGACATTTGCATTGTATTG
1 TGATTACATGTAAGACCATGTCTGGGACAATGGCATCGTA-TG
* * * *
50914441 AGATTACGTGTAAGACCATTTCTGGGACATTGGCATCGTTAAT-
1 TGATTACATGTAAGACCATGTCTGGGACAATGGCATCG-T-ATG
* * * *
50914484 CGATTTCATGTAAGACCCTGTTTGGGACAATGGCATCGATATG
1 TGATTACATGTAAGACCATGTCTGGGACAATGGCATCG-TATG
* * * *
50914527 TGATAACATGTAAGACCATATCTGGGA-TATGGCATTGTATG
1 TGATTACATGTAAGACCATGTCTGGGACAATGGCATCGTATG
50914568 AGCTTATATG
Statistics
Matches: 102, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
41 4 0.04
42 10 0.10
43 85 0.83
44 2 0.02
45 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.34
Consensus pattern (42 bp):
TGATTACATGTAAGACCATGTCTGGGACAATGGCATCGTATG
Found at i:50918472 original size:31 final size:31
Alignment explanation
Indices: 50918437--50918500 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
50918427 TTAACACTTC
50918437 ATGGATTTTCATGCCATCACTATAACCAATT
1 ATGGATTTTCATGCCATCACTATAACCAATT
50918468 ATGGATTTTCATGCCATCACTATAACCAATT
1 ATGGATTTTCATGCCATCACTATAACCAATT
50918499 AT
1 AT
50918501 CATACATTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.36
Consensus pattern (31 bp):
ATGGATTTTCATGCCATCACTATAACCAATT
Found at i:50926045 original size:40 final size:40
Alignment explanation
Indices: 50925990--50926207 Score: 341
Period size: 40 Copynumber: 5.5 Consensus size: 40
50925980 CGGATGGCAA
* *
50925990 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
50926030 CCGGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
50926070 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
50926110 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
50926150 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
50926190 -CTGACTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
50926208 TACATGGTTT
Statistics
Matches: 167, Mismatches: 10, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
39 15 0.09
40 151 0.90
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:50935239 original size:79 final size:80
Alignment explanation
Indices: 50935073--50935257 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 80
50935063 TTGAATGATG
* *
50935073 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
50935137 TGTGCGAGATACTAA
66 TGTGCGAGATACTAA
* * * * **
50935152 TTCTGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
50935214 ATTGTGCGAGTTACTGTAA
64 ATTGTGCGAGATAC--TAA
*
50935233 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
50935258 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
78 1 0.01
79 54 0.61
80 31 0.35
81 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTAA
Found at i:50935264 original size:40 final size:40
Alignment explanation
Indices: 50935073--50935257 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
50935063 TTGAATGATG
* * * *
50935073 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
50935113 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
50935153 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
50935192 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTGTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAA
*
50935233 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
50935258 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:50935279 original size:79 final size:78
Alignment explanation
Indices: 50935126--50935290 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 78
50935116 GGACTAAGAT
* * **
50935126 CCGAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAA-TCCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
50935191 ATCCGGGTTAAGTC
65 ATCCGGGTTAAATC
* *
50935205 CCGAAGGCAATTGTGCGAGTTACTGTAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATAC--TAATCCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
50935268 TATATCC-GGTTAAATT
62 TAAATCCGGGTTAAATC
50935284 CCGAAGG
1 CCGAAGG
50935291 TACGTGATTT
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
79 45 0.62
80 25 0.34
81 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGAAGGCAATTGTGCGAGATACTAATCCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
TCCGGGTTAAATC
Found at i:50943154 original size:79 final size:81
Alignment explanation
Indices: 50943018--50943202 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 81
50943008 TTGAATGATG
* *
50943018 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
50943082 TGTGCGAGATAC-TAA
66 TGTGCGAGATACGTAA
* * * **
50943097 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
50943159 ATTGTGCGAGTTACTGTAA
64 ATTGTGCGAGATAC-GTAA
*
50943178 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
50943203 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 1 0.01
79 55 0.60
80 32 0.35
81 3 0.03
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACGTAA
Found at i:50943209 original size:40 final size:40
Alignment explanation
Indices: 50943018--50943202 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
50943008 TTGAATGATG
* * * *
50943018 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
50943058 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
50943098 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
50943137 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTGTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAA
*
50943178 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
50943203 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:50943224 original size:79 final size:78
Alignment explanation
Indices: 50943071--50943235 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 78
50943061 GGACTAAGAT
* **
50943071 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAA-TCCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
50943136 ATCCGGGTTAAGTC
65 ATCCGGGTTAAATC
* *
50943150 CCGAAGGCAATTGTGCGAGTTACTGTAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATAC--TAATCCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
50943213 TATATCC-GGTTAAATT
62 TAAATCCGGGTTAAATC
50943229 CCGAAGG
1 CCGAAGG
50943236 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
79 46 0.62
80 25 0.34
81 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGAAGGCAATTGTGCGAGATACTAATCCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
TCCGGGTTAAATC
Found at i:50952212 original size:40 final size:40
Alignment explanation
Indices: 50952117--50952374 Score: 337
Period size: 40 Copynumber: 6.5 Consensus size: 40
50952107 TGGATGATAA
* *
50952117 CCGGGATAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* *
50952158 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
50952198 CCGGGCTAATTCCCGAAGGCATTTGTGCGGGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
50952238 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
50952278 CCGGGCTAAGTCTCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
50952318 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
50952357 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
50952375 TACTTGGCTT
Statistics
Matches: 195, Mismatches: 19, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
38 15 0.08
39 15 0.08
40 138 0.71
41 23 0.12
42 4 0.02
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:50954034 original size:93 final size:93
Alignment explanation
Indices: 50953875--50954045 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
50953865 GCCCCTAAGT
* * *
50953875 GAACTCGGACTCAAATCAATGAGCTCGGGCGTTCACATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAAATCAACGAGCTCGGACGTTCACATCCATAAATGAACTCAGACTCAACTCAA
50953940 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * * *
50953968 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGA-ATCCATAAGTGAACTCAGACTCAACTCA
1 GAACTCGGACTCAAATCAACGAGCTCGGAC-GTTCACATCCATAAATGAACTCAGACTCAACTCA
50954032 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
50954046 TCAACCATCC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
93 66 0.96
94 3 0.04
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAAATCAACGAGCTCGGACGTTCACATCCATAAATGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:50954061 original size:46 final size:45
Alignment explanation
Indices: 50953920--50954061 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 45
50953910 CATCCATAAA
50953920 TGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCTCA-
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT-AG
* * * *
50953967 CGAACTCGGACTCAACTCAACGAGTTCGGACAT-TTGAATCCAT-AAG
1 TGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAA-CCATCTAG
*
50954013 TGAACTCAGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CTAG
50954059 TGA
1 TGA
50954062 CATGTCACTT
Statistics
Matches: 77, Mismatches: 9, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
44 6 0.08
45 5 0.06
46 32 0.42
47 31 0.40
48 1 0.01
49 2 0.03
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.23
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTAG
Found at i:50954499 original size:30 final size:30
Alignment explanation
Indices: 50954465--50954524 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
50954455 ATTTAATACG
50954465 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
50954495 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
50954525 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:50958111 original size:42 final size:41
Alignment explanation
Indices: 50958043--50958166 Score: 122
Period size: 42 Copynumber: 2.9 Consensus size: 41
50958033 TGATTTGAGA
* *
50958043 ATTACATGTAAGAACATGTCTGGGACATTGGCATCGTATATG
1 ATTACATGTAAG-ACCTGTCTAGGACATTGGCATCGTATATG
* * * * *
50958085 ATTTCGTGTAAGACCCTGTCTAGGACAATGGCATCAATATTTG
1 ATTACATGTAAGA-CCTGTCTAGGACATTGGCATC-GTATATG
** *
50958128 ATTACATGTAAGACCTCGTCTAGGATGTTGGCATTGTAT
1 ATTACATGTAAGACCT-GTCTAGGACATTGGCATCGTAT
50958167 GAGCTTTTCG
Statistics
Matches: 65, Mismatches: 14, Indels: 6
0.76 0.16 0.07
Matches are distributed among these distances:
41 1 0.02
42 34 0.52
43 30 0.46
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (41 bp):
ATTACATGTAAGACCTGTCTAGGACATTGGCATCGTATATG
Found at i:50958160 original size:43 final size:42
Alignment explanation
Indices: 50958043--50958161 Score: 116
Period size: 43 Copynumber: 2.8 Consensus size: 42
50958033 TGATTTGAGA
* * *
50958043 ATTACATGTAAGAACAT-GTCTGGGACATTGGCATCGTATATG
1 ATTACATGTAAG-ACCTCGTCTAGGACATTGGCATCATATATG
* * * *
50958085 ATTTCGTGTAAGACC-CTGTCTAGGACAATGGCATCAATATTTG
1 ATTACATGTAAGACCTC-GTCTAGGACATTGGCATC-ATATATG
**
50958128 ATTACATGTAAGACCTCGTCTAGGATGTTGGCAT
1 ATTACATGTAAGACCTCGTCTAGGACATTGGCAT
50958162 TGTATGAGCT
Statistics
Matches: 61, Mismatches: 12, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
41 2 0.03
42 26 0.43
43 32 0.52
44 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.32
Consensus pattern (42 bp):
ATTACATGTAAGACCTCGTCTAGGACATTGGCATCATATATG
Found at i:50961540 original size:42 final size:42
Alignment explanation
Indices: 50961410--50961540 Score: 128
Period size: 42 Copynumber: 3.2 Consensus size: 42
50961400 TAAAGCCTGT
50961410 CCTGCTAGACTCAAAGTCTGATTTTTATACACTGGCAATAAG
1 CCTGCTAGACTCAAAGTCTGATTTTTATACACTGGCAATAAG
* * * * * ** *
50961452 CCTACTAGGC-CTAAG-CTTG-TATTT-CACACTATC-ACAAG
1 CCTGCTAGACTCAAAGTC-TGATTTTTATACACTGGCAATAAG
50961490 ACCTGCTAGACTCAAAGTCTGATTTTTATACACTGGCAATAAG
1 -CCTGCTAGACTCAAAGTCTGATTTTTATACACTGGCAATAAG
*
50961533 CTTGCTAG
1 CCTGCTAG
50961541 GCAATAAGCC
Statistics
Matches: 65, Mismatches: 17, Indels: 14
0.68 0.18 0.15
Matches are distributed among these distances:
38 4 0.06
39 14 0.22
40 11 0.17
41 11 0.17
42 21 0.32
43 4 0.06
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.31
Consensus pattern (42 bp):
CCTGCTAGACTCAAAGTCTGATTTTTATACACTGGCAATAAG
Found at i:50967022 original size:46 final size:46
Alignment explanation
Indices: 50966955--50967129 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
50966945 TGTAACCCGC
* *
50966955 CCATAAGTGAACTTAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
50967001 CCATAAGTGAACTCAGACTCAACTCAACGAGCT-GGG-ATGC-CTAGTT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGC-A--T
* *** * * *
50967047 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCAT
* *
50967094 CCATAAGTGAACTTAGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG
50967130 ATGCCCAAAT
Statistics
Matches: 105, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 63 0.60
47 28 0.27
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:50969754 original size:27 final size:27
Alignment explanation
Indices: 50969692--50969806 Score: 119
Period size: 27 Copynumber: 4.3 Consensus size: 27
50969682 AGCATGGCTG
* * *
50969692 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGGACAGATAATTGTGGCAGAGCCA
** *
50969718 CCAAATACAGATAATCGTGGCAGAGCCA
1 CC-AGGACAGATAATTGTGGCAGAGCCA
50969746 CCAGGACAGA-AATATGTGGCAGAGCCA
1 CCAGGACAGATAAT-TGTGGCAGAGCCA
*
50969773 CCA-GATCAGATAATTGTGGCATAGCCA
1 CCAGGA-CAGATAATTGTGGCAGAGCCA
50969800 CCAGGAC
1 CCAGGAC
50969807 GCTTCCTCAA
Statistics
Matches: 74, Mismatches: 9, Indels: 11
0.79 0.10 0.12
Matches are distributed among these distances:
26 7 0.09
27 50 0.68
28 17 0.23
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.15
Consensus pattern (27 bp):
CCAGGACAGATAATTGTGGCAGAGCCA
Found at i:50973069 original size:40 final size:40
Alignment explanation
Indices: 50972990--50973207 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
50972980 AAGCCAAGTA
* * * * *
50972990 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
50973029 CCTTCGGGACATAGCCTGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
50973069 CCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
50973109 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * **
50973149 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGGGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
50973189 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
50973208 TTATCATCCA
Statistics
Matches: 160, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 13 0.08
40 147 0.92
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:50978698 original size:40 final size:40
Alignment explanation
Indices: 50978654--50979002 Score: 495
Period size: 40 Copynumber: 8.7 Consensus size: 40
50978644 ACCACATGAT
* * * * *
50978654 TGCTCTTCGGGACCTAGCCCAGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * * *
50978694 TGCTCTTCGAGG-TTTAGCACAGATATATTACTAGCACGAA
1 TGCTCTTCG-GGACTTAGCCCGGATACATCACTAGCACGAA
* *
50978734 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
50978774 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
50978814 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
50978854 TGCTCTTCGGGACTTAGGCCGGGTACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
50978894 TGCTCTTCGGGACTTAGCCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAG-CCCGGATACATCACTAGCACGAA
* *
50978935 TGCTCTTCGGGACTTAGCCCGGGTACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
50978975 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
50979003 GTCGAGACCT
Statistics
Matches: 280, Mismatches: 26, Indels: 7
0.89 0.08 0.02
Matches are distributed among these distances:
39 5 0.02
40 236 0.84
41 39 0.14
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:50983148 original size:40 final size:40
Alignment explanation
Indices: 50983096--50983325 Score: 336
Period size: 40 Copynumber: 5.8 Consensus size: 40
50983086 ATAACCACAA
* * * *
50983096 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
50983136 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCATCTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
50983176 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
50983216 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
50983256 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
50983296 GCATAAATGCCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
50983326 GTATTCAAAT
Statistics
Matches: 176, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 172 0.98
41 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:50986157 original size:40 final size:40
Alignment explanation
Indices: 50986105--50986334 Score: 336
Period size: 40 Copynumber: 5.8 Consensus size: 40
50986095 ATAACCACAA
* * * *
50986105 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
50986145 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCATCTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
50986185 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
50986225 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
50986265 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
50986305 GCATAAATGCCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
50986335 GTATTCAAAT
Statistics
Matches: 176, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 172 0.98
41 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:50989165 original size:40 final size:40
Alignment explanation
Indices: 50989112--50989343 Score: 306
Period size: 40 Copynumber: 5.8 Consensus size: 40
50989102 TATAACCACA
* * * *
50989112 AGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAACCCGGATAAAATC-ACT
* * * *
50989152 CGTACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACT
1 AGCACAAATGCCTTCGGGTCTTAACCCGGATAAAATC-ACT
* * *
50989192 CGCACAAATGCCTTTGGGTCTTAGCCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAACCCGGATAAAATCACT
50989232 AGCACAAATGCCTTCGGGTCTTAACCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAACCCGGATAAAATCACT
*
50989272 AGCATAAATGCCTTCGGGTCTTAACCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAACCCGGATAAAATCACT
* *
50989312 AGCACAAATGCCTTCGGGACTTAGCCCGGATA
1 AGCACAAATGCCTTCGGGTCTTAACCCGGATA
50989344 TCATTCAAAT
Statistics
Matches: 175, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 171 0.98
41 4 0.02
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAACCCGGATAAAATCACT
Found at i:50996747 original size:40 final size:40
Alignment explanation
Indices: 50996668--50996914 Score: 252
Period size: 40 Copynumber: 6.5 Consensus size: 40
50996658 AAGCCAAGTA
* * * * *
50996668 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
50996707 CCTTCGGGACATAGCCCGAATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
50996747 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
50996787 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
50996827 ----C----CTT-GCCCGGATATAGTAACTC-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
50996857 -CTTCGAGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
50996896 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
50996915 TTATCATCCA
Statistics
Matches: 178, Mismatches: 17, Indels: 25
0.81 0.08 0.11
Matches are distributed among these distances:
30 8 0.04
31 18 0.10
32 3 0.02
33 1 0.01
36 1 0.01
37 4 0.02
38 14 0.08
39 19 0.11
40 110 0.62
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:50996855 original size:30 final size:31
Alignment explanation
Indices: 50996800--50996857 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
50996790 TCGAGACTTA
50996800 GCCCGGATATAGTAACTCGCACAAATGCCTT
1 GCCCGGATATAGTAACTCGCACAAATGCCTT
50996831 GCCCGGATATAGTAACTC-CACAAATGC
1 GCCCGGATATAGTAACTCGCACAAATGC
50996858 TTCGAGACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
30 9 0.33
31 18 0.67
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (31 bp):
GCCCGGATATAGTAACTCGCACAAATGCCTT
Found at i:50996873 original size:69 final size:71
Alignment explanation
Indices: 50996760--50996899 Score: 214
Period size: 69 Copynumber: 2.0 Consensus size: 71
50996750 TCGGGACTTA
*
50996760 GCCCGGATATAGCAACTCGCACAAATGCCTTCGAGACTTAGCCCGGATA-TAGTAACTCGCACAA
1 GCCCGGATATAGCAACTCGCACAAATGCCTTCGAGACTTAGCCCGGA-ACTAGTAACTAGCACAA
50996824 ATGCCTT
65 ATGCCTT
* * *
50996831 GCCCGGATATAGTAACTC-CACAAATG-CTTCGAGACTTAGCCCGGAACTAGTCACTAGCGCAAA
1 GCCCGGATATAGCAACTCGCACAAATGCCTTCGAGACTTAGCCCGGAACTAGTAACTAGCACAAA
50996894 TGCCTT
66 TGCCTT
50996900 CGGGACTTAG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
68 1 0.02
69 38 0.59
70 8 0.12
71 17 0.27
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (71 bp):
GCCCGGATATAGCAACTCGCACAAATGCCTTCGAGACTTAGCCCGGAACTAGTAACTAGCACAAA
TGCCTT
Found at i:51001246 original size:56 final size:56
Alignment explanation
Indices: 51001160--51001279 Score: 240
Period size: 56 Copynumber: 2.1 Consensus size: 56
51001150 ACAAGGGATG
51001160 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
51001216 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
51001272 ATGGGCAA
1 ATGGGCAA
51001280 TAAACTAATA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 64 1.00
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:51002490 original size:40 final size:40
Alignment explanation
Indices: 51002406--51002630 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
51002396 TCGAATGATG
* * * *
51002406 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
51002446 TCCGGACTAA-TATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGT-CCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
51002486 TCCGGGCTAAG-CCTGAAGGCATTGGTGCTAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
51002525 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51002565 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
51002606 -CCGGGCTACGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51002631 AACGAGTAGC
Statistics
Matches: 157, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
39 33 0.21
40 115 0.73
41 9 0.06
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51009176 original size:56 final size:56
Alignment explanation
Indices: 51009090--51009209 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
51009080 ACAAGGGATG
51009090 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
51009146 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
51009202 ATGGGCAA
1 ATGGGCAA
51009210 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:51010575 original size:40 final size:40
Alignment explanation
Indices: 51010337--51010561 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
51010327 TCGAATGATG
* * * *
51010337 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
51010377 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51010417 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51010456 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51010496 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
51010537 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51010562 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51010583 original size:119 final size:119
Alignment explanation
Indices: 51010337--51010584 Score: 290
Period size: 119 Copynumber: 2.1 Consensus size: 119
51010327 TCGAATGATG
* *
51010337 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
51010402 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * **
51010456 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
51010519 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
51010576 TCC-GGTTAA
1 TCCGGGTTAA
51010585 ATTCTGAAGG
Statistics
Matches: 110, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
118 3 0.03
119 76 0.69
120 31 0.28
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:51014951 original size:70 final size:70
Alignment explanation
Indices: 51014789--51014956 Score: 237
Period size: 70 Copynumber: 2.4 Consensus size: 70
51014779 TAGATGCACG
* * * *
51014789 TAAGAGCCAATCCACCCGAAACACACCAATTCTTATAAGAGCTAATCCCTCTAAAACACACCAAT
1 TAAGAGCTAATCCAACCGAAACACACCAATGCTTATAAGAGCTAATCCCTCCAAAACACACCAAT
51014854 GCTAA
66 GCTAA
** *
51014859 TAAGAGCTAATCCCTCCAAAACACACCAATGCTTATAAGAGCTAATCCCTCCAAAACACACCAAT
1 TAAGAGCTAATCCAACCGAAACACACCAATGCTTATAAGAGCTAATCCCTCCAAAACACACCAAT
51014924 GCTAA
66 GCTAA
* * * *
51014929 TAAGAGTTAGTCTAACTGAAACACACCA
1 TAAGAGCTAATCCAACCGAAACACACCA
51014957 CAAAATTATA
Statistics
Matches: 85, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
70 85 1.00
ACGTcount: A:0.42, C:0.30, G:0.10, T:0.19
Consensus pattern (70 bp):
TAAGAGCTAATCCAACCGAAACACACCAATGCTTATAAGAGCTAATCCCTCCAAAACACACCAAT
GCTAA
Found at i:51014956 original size:35 final size:35
Alignment explanation
Indices: 51014789--51014934 Score: 222
Period size: 35 Copynumber: 4.2 Consensus size: 35
51014779 TAGATGCACG
* * * *
51014789 TAAGAGCCAATCCAC-CCGAAACACACCAATTCTTA
1 TAAGAGCTAATCC-CTCCAAAACACACCAATGCTAA
*
51014824 TAAGAGCTAATCCCTCTAAAACACACCAATGCTAA
1 TAAGAGCTAATCCCTCCAAAACACACCAATGCTAA
*
51014859 TAAGAGCTAATCCCTCCAAAACACACCAATGCTTA
1 TAAGAGCTAATCCCTCCAAAACACACCAATGCTAA
51014894 TAAGAGCTAATCCCTCCAAAACACACCAATGCTAA
1 TAAGAGCTAATCCCTCCAAAACACACCAATGCTAA
51014929 TAAGAG
1 TAAGAG
51014935 TTAGTCTAAC
Statistics
Matches: 102, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
34 1 0.01
35 101 0.99
ACGTcount: A:0.42, C:0.30, G:0.10, T:0.18
Consensus pattern (35 bp):
TAAGAGCTAATCCCTCCAAAACACACCAATGCTAA
Found at i:51016106 original size:19 final size:19
Alignment explanation
Indices: 51016084--51016139 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
51016074 GGCCAGCCCG
*
51016084 TGTGAAAATGCCCAGGCCA
1 TGTGGAAATGCCCAGGCCA
* *
51016103 TGTGGAAATGCCCAGCCCG
1 TGTGGAAATGCCCAGGCCA
51016122 TGTGGAAATGCCCAGGCC
1 TGTGGAAATGCCCAGGCC
51016140 CAGTCCTATT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.25, C:0.29, G:0.30, T:0.16
Consensus pattern (19 bp):
TGTGGAAATGCCCAGGCCA
Found at i:51016927 original size:134 final size:133
Alignment explanation
Indices: 51016704--51016956 Score: 479
Period size: 134 Copynumber: 1.9 Consensus size: 133
51016694 TGGTGATTCC
51016704 ATTTTGGTTATTTAGATGTTATTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
1 ATTTTGGTTATTTAGATGTTATTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
51016769 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCCCACGTTTTATATAATAAAATTGT
66 TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCCCACGTTTTATATAATAAAATTGT
51016834 TAT
131 TAT
*
51016837 ATTTTGGTTATTTAGATGTTCTTTTGGTCTGTTTTTCATGTTTCTATCCAACTTATGTGTTTAGT
1 ATTTTGGTTATTTAGATGTTATTTTGGTCTG-TTTTCATGTTTCTATCCAACTTATGTGTTTAGT
*
51016902 GTGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCTCACGTTTTATAT
65 GTGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCCCACGTTTTATAT
51016957 TGTTGAATTC
Statistics
Matches: 117, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
133 30 0.26
134 87 0.74
ACGTcount: A:0.20, C:0.10, G:0.19, T:0.51
Consensus pattern (133 bp):
ATTTTGGTTATTTAGATGTTATTTTGGTCTGTTTTCATGTTTCTATCCAACTTATGTGTTTAGTG
TGGACTTAGATTGATTTAAGAGTTTATTGCTGTCTTGTTGCCCACGTTTTATATAATAAAATTGT
TAT
Found at i:51020897 original size:368 final size:372
Alignment explanation
Indices: 51020018--51020926 Score: 1754
Period size: 373 Copynumber: 2.5 Consensus size: 372
51020008 CTTGTCCATT
51020018 AAAATTACAACAATAGCTGACTTTCTCTCCAACCTTATTTAAATATTTTAAAGATTCAAAGTATA
1 AAAATTACAACAATAGCTGACTTTCTCTCCAACCTTATTTAAATATTTTAAAGATTCAAAGTATA
*
51020083 TAGGCTGGAAACCTAACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTG
66 TAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTG
51020148 TAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGCT
131 TAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGCT
51020213 CATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTAC
196 CATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTAC
51020278 GATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAA
261 GATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAA
51020343 TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
326 TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
*
51020390 AAAATTACAACAATAACTGACTTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTAT
1 AAAATTACAACAATAGCTGACTTTCTCTCCAACCTTA-TTTAAATATTTTAAAGATTCAAAGTAT
51020455 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
65 ATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGT
51020520 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAA-ACTTGAAAAAAGTTCTATCGAGC
130 GTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGC
51020584 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
195 TCATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTA
51020649 CGATTC-TTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
260 CGATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTA
51020713 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTAC-TTTTATC
325 ATATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
*
51020760 -AAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTAAATATTTTAAAGATTCAAAGTATA
1 AAAATTACAACAATAGCTGACTTTCTCTCCAACCTTATTTAAATATTTTAAAGATTCAAAGTATA
51020824 TAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTG
66 TAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTG
51020889 TAACAACGCCACGTATGATGAATCTTAAAAAATTCAAA
131 TAACAACGCCACGTATGATGAATCTTAAAAAATTCAAA
51020927 TGTTTCAATT
Statistics
Matches: 532, Mismatches: 4, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
368 131 0.25
369 34 0.06
370 7 0.01
371 98 0.18
372 130 0.24
373 132 0.25
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.38
Consensus pattern (372 bp):
AAAATTACAACAATAGCTGACTTTCTCTCCAACCTTATTTAAATATTTTAAAGATTCAAAGTATA
TAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTG
TAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTATCGAGCT
CATTTACTATTGAATATTTATATAACCTTAATTTATTTCCAATTTACTTATAAAAATTAAACTAC
GATTCTTTTTTGATATTATTATATTCAAATTACTATTTTTTTATATTAATAATGTTTTATTTTAA
TATTTAATATTTTTAAATTTCTTTAAAAGTTATAACTACTTTTTATC
Found at i:51021069 original size:23 final size:24
Alignment explanation
Indices: 51021014--51021080 Score: 93
Period size: 24 Copynumber: 2.8 Consensus size: 24
51021004 ATTATTATTG
*
51021014 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
*
51021038 AAATATTATTC-TCCGTTTTATTAC
1 AAATATTA-TCGTCCGTTTTATCAC
51021062 -AATATTATCGTCCGTTTTA
1 AAATATTATCGTCCGTTTTA
51021081 CCATTTAAGT
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
22 2 0.05
23 16 0.41
24 19 0.49
25 2 0.05
ACGTcount: A:0.27, C:0.19, G:0.07, T:0.46
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:51021302 original size:15 final size:15
Alignment explanation
Indices: 51021257--51021310 Score: 69
Period size: 15 Copynumber: 3.8 Consensus size: 15
51021247 ACGACATGTC
51021257 TATTATTTAATTAAA
1 TATTATTTAATTAAA
* *
51021272 -ATAATTTTA-T-AA
1 TATTATTTAATTAAA
51021284 TATTATTTAATTAAA
1 TATTATTTAATTAAA
51021299 TATTATTTAATT
1 TATTATTTAATT
51021311 CCGCTACTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
12 2 0.06
13 8 0.25
14 8 0.25
15 14 0.44
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATTATTTAATTAAA
Found at i:51021425 original size:9 final size:9
Alignment explanation
Indices: 51021413--51021635 Score: 148
Period size: 9 Copynumber: 24.6 Consensus size: 9
51021403 TATTTGATAT
*
51021413 CATAATTTA
1 CATAACTTA
51021422 CATAACTTA
1 CATAACTTA
* *
51021431 TATAACATA
1 CATAACTTA
*
51021440 TATAACTTA
1 CATAACTTA
51021449 CATAACTTA
1 CATAACTTA
* *
51021458 TATAACCTA
1 CATAACTTA
51021467 CATAACTTA
1 CATAACTTA
*
51021476 TATAACTTA
1 CATAACTTA
*
51021485 TATAACTTA
1 CATAACTTA
* *
51021494 GATAA-ATA
1 CATAACTTA
51021502 CA-AACTTA
1 CATAACTTA
51021510 CATAACTTA
1 CATAACTTA
51021519 CATAATACTTA
1 CAT-A-ACTTA
* **
51021530 AATATTTTATA
1 CATA-ACT-TA
*
51021541 TCATAATTTA
1 -CATAACTTA
51021551 CATAACTTA
1 CATAACTTA
51021560 CATAACTTA
1 CATAACTTA
*
51021569 TATAACTTA
1 CATAACTTA
* *
51021578 GATAA-ATA
1 CATAACTTA
* *
51021586 TATAATTTA
1 CATAACTTA
*
51021595 CATAA-ATA
1 CATAACTTA
* * *
51021603 TATATCATA
1 CATAACTTA
*
51021612 TCATAAATTA
1 -CATAACTTA
51021622 CATAACTTA
1 CATAACTTA
51021631 CATAA
1 CATAA
51021636 TACTTAATAT
Statistics
Matches: 171, Mismatches: 34, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
7 2 0.01
8 18 0.11
9 126 0.74
10 11 0.06
11 11 0.06
12 3 0.02
ACGTcount: A:0.48, C:0.14, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:51021444 original size:18 final size:18
Alignment explanation
Indices: 51021413--51021635 Score: 166
Period size: 18 Copynumber: 12.3 Consensus size: 18
51021403 TATTTGATAT
* *
51021413 CATAATTTACATAACTTA
1 CATAACTTATATAACTTA
* *
51021431 TATAACATATATAACTTA
1 CATAACTTATATAACTTA
*
51021449 CATAACTTATATAACCTA
1 CATAACTTATATAACTTA
51021467 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
51021485 TATAACTTAGATAA-ATA
1 CATAACTTATATAACTTA
*
51021502 CA-AACTTACATAACTTA
1 CATAACTTATATAACTTA
* **
51021519 CATAATACTTAAATATTTTATA
1 CAT-A-ACTTATATA-ACT-TA
* *
51021541 TCATAATTTACATAACTTA
1 -CATAACTTATATAACTTA
51021560 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
51021578 GATAA-ATATATAATTTA
1 CATAACTTATATAACTTA
* * *
51021595 CATAA-ATATATATCATA
1 CATAACTTATATAACTTA
* *
51021612 TCATAAATTACATAACTTA
1 -CATAACTTATATAACTTA
51021631 CATAA
1 CATAA
51021636 TACTTAATAT
Statistics
Matches: 162, Mismatches: 34, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
16 10 0.06
17 30 0.19
18 88 0.54
19 11 0.07
20 9 0.06
21 8 0.05
22 3 0.02
23 3 0.02
ACGTcount: A:0.48, C:0.14, G:0.01, T:0.38
Consensus pattern (18 bp):
CATAACTTATATAACTTA
Found at i:51021582 original size:27 final size:27
Alignment explanation
Indices: 51021413--51021582 Score: 164
Period size: 27 Copynumber: 6.2 Consensus size: 27
51021403 TATTTGATAT
* *
51021413 CATAATTTACATAACTTATATAACATA
1 CATAACTTACATAACTTATATAACTTA
* *
51021440 TATAACTTACATAACTTATATAACCTA
1 CATAACTTACATAACTTATATAACTTA
*
51021467 CATAACTTATATAACTTATATAACTTA
1 CATAACTTACATAACTTATATAACTTA
* * *
51021494 GATAA-ATACA-AACTTACATAACTTA
1 CATAACTTACATAACTTATATAACTTA
* ** *
51021519 CATAATACTTAAATATTTTATATCATAATTTA
1 CAT-A-ACTTACATA-ACT-TAT-ATAACTTA
51021551 CATAACTTACATAACTTATATAACTTA
1 CATAACTTACATAACTTATATAACTTA
*
51021578 GATAA
1 CATAA
51021583 ATATATAATT
Statistics
Matches: 114, Mismatches: 22, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
25 16 0.14
26 4 0.04
27 64 0.56
28 6 0.05
29 2 0.02
30 9 0.08
31 3 0.03
32 10 0.09
ACGTcount: A:0.46, C:0.15, G:0.01, T:0.38
Consensus pattern (27 bp):
CATAACTTACATAACTTATATAACTTA
Found at i:51021589 original size:17 final size:17
Alignment explanation
Indices: 51021552--51021635 Score: 87
Period size: 17 Copynumber: 4.8 Consensus size: 17
51021542 CATAATTTAC
*
51021552 ATAACTTACATAACTTAT
1 ATAACTTACATAA-ATAT
*
51021570 ATAACTTAGATAAATAT
1 ATAACTTACATAAATAT
*
51021587 ATAATTTACATAAATAT
1 ATAACTTACATAAATAT
* * *
51021604 ATATCATATCATAAATTAC
1 ATAACTTA-CATAAA-TAT
51021623 ATAACTTACATAA
1 ATAACTTACATAA
51021636 TACTTAATAT
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
17 23 0.43
18 23 0.43
19 8 0.15
ACGTcount: A:0.50, C:0.12, G:0.01, T:0.37
Consensus pattern (17 bp):
ATAACTTACATAAATAT
Found at i:51033619 original size:43 final size:42
Alignment explanation
Indices: 51033568--51033703 Score: 136
Period size: 43 Copynumber: 3.2 Consensus size: 42
51033558 ATATGATTTT
51033568 ATGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATTAC
1 ATGTAAGACCCTGTCT-GGACAGAGGCATCGATATTGAATTAC
* * * * *
51033611 ATATAAGACCATGTCTAGGACATCA-GCATTG-TATCTG-ATTTC
1 ATGTAAGACCCTGTCT-GGACA-GAGGCATCGATAT-TGAATTAC
* * *
51033653 ATGT-AGACCCTATCTGGACGGAGGCATCAATATTGAATTAC
1 ATGTAAGACCCTGTCTGGACAGAGGCATCGATATTGAATTAC
51033694 ATGTAAGACC
1 ATGTAAGACC
51033704 ATATCCGGGA
Statistics
Matches: 73, Mismatches: 14, Indels: 13
0.73 0.14 0.13
Matches are distributed among these distances:
39 1 0.01
40 10 0.14
41 20 0.27
42 15 0.21
43 26 0.36
44 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (42 bp):
ATGTAAGACCCTGTCTGGACAGAGGCATCGATATTGAATTAC
Found at i:51033733 original size:83 final size:85
Alignment explanation
Indices: 51033551--51033726 Score: 239
Period size: 83 Copynumber: 2.1 Consensus size: 85
51033541 GGTGTTACAT
* * * * *
51033551 GCATCGTATATGATTTTATGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATTACATATA
1 GCATTGTATCTGATTTCATGTAAGACCCTATCTGGGACAGAGGCATCAATATTGAATTACATATA
* *
51033616 AGACCATGTCTAGGACATCA
66 AGACCATATCCAGGACATCA
* *
51033636 GCATTGTATCTGATTTCATGT-AGACCCTATCT-GGACGGAGGCATCAATATTGAATTACATGTA
1 GCATTGTATCTGATTTCATGTAAGACCCTATCTGGGACAGAGGCATCAATATTGAATTACATATA
* *
51033699 AGACCATATCCGGGACGTCA
66 AGACCATATCCAGGACATCA
51033719 GCATTGTA
1 GCATTGTA
51033727 CTTGATTATA
Statistics
Matches: 80, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
83 52 0.65
84 10 0.12
85 18 0.22
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (85 bp):
GCATTGTATCTGATTTCATGTAAGACCCTATCTGGGACAGAGGCATCAATATTGAATTACATATA
AGACCATATCCAGGACATCA
Found at i:51037007 original size:86 final size:86
Alignment explanation
Indices: 51036862--51037033 Score: 317
Period size: 86 Copynumber: 2.0 Consensus size: 86
51036852 TGATTTCAAT
* *
51036862 AGCTCCGTATAGAATGGCTCTGATCGAGTTAAAAGAATTAAAATCTCAGTTGCAAGAATTGACCG
1 AGCTCCGTATAGAATGGCTCCGATCGAGTTAAAAGAATTAAAATCTCAGTTCCAAGAATTGACCG
51036927 ATCGAGGGTTTGCTAGATCGA
66 ATCGAGGGTTTGCTAGATCGA
*
51036948 AGCTCCGTATAGAATGGCTCCGATCGAGTTAAAAGGATTAAAATCTCAGTTCCAAGAATTGACCG
1 AGCTCCGTATAGAATGGCTCCGATCGAGTTAAAAGAATTAAAATCTCAGTTCCAAGAATTGACCG
51037013 ATCGAGGGTTTGCTAGATCGA
66 ATCGAGGGTTTGCTAGATCGA
51037034 GTTTTTCACC
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 83 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.26
Consensus pattern (86 bp):
AGCTCCGTATAGAATGGCTCCGATCGAGTTAAAAGAATTAAAATCTCAGTTCCAAGAATTGACCG
ATCGAGGGTTTGCTAGATCGA
Found at i:51041061 original size:43 final size:42
Alignment explanation
Indices: 51040914--51041148 Score: 163
Period size: 43 Copynumber: 5.5 Consensus size: 42
51040904 TCTGAGATAT
* * * * *
51040914 CGTGTAAGACCGTGTCTGGGACACATGCCTCGAT-TGAGATTCA
1 CGTGTAAGACCATGTCTGGGACAGAGGCATCGATATTA-ATT-A
* ** *
51040957 CGTATAAGACCATG-CATGGGACATCGGCATC-ATATCTAATTT
1 CGTGTAAGACCATGTC-TGGGACAGAGGCATCGATAT-TAATTA
* *
51040999 CGTGTAAGACCCTATCTGGGACAGAGGCATCGATATTGAATTA
1 CGTGTAAGACCATGTCTGGGACAGAGGCATCGATATT-AATTA
* * ** * * *
51041042 CATATAAGACCATGTCTGGGACATCGACATCG-TACCTAATTT
1 CGTGTAAGACCATGTCTGGGACAGAGGCATCGATA-TTAATTA
* *
51041084 TGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTTAATTA
1 CGTGTAAGACCATGTCTGGGACAGAGGCATCGATA-TTAATTA
* * * *
51041127 CATGCAAGACCACGTCCGGGAC
1 CGTGTAAGACCATGTCTGGGAC
51041149 GTTGGCATTG
Statistics
Matches: 145, Mismatches: 39, Indels: 16
0.73 0.19 0.08
Matches are distributed among these distances:
42 59 0.41
43 85 0.59
44 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACAGAGGCATCGATATTAATTA
Found at i:51041062 original size:85 final size:85
Alignment explanation
Indices: 51040913--51041148 Score: 289
Period size: 85 Copynumber: 2.8 Consensus size: 85
51040903 GTCTGAGATA
* * * * *
51040913 TCGTGTAAGACCGTGTCTGGGACACATGCCTCG--ATTGAGATTCACGTATAAGACCATG-CATG
1 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGA-ATT-ACATATAAGACCATGTC-TG
* *
51040975 GGACATCGGCATCATATCTAATT
63 GGACATCGACATCATACCTAATT
*
51040998 TCGTGTAAGACCCTATCTGGGACAGAGGCATCGATATTGAATTACATATAAGACCATGTCTGGGA
1 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATTACATATAAGACCATGTCTGGGA
*
51041063 CATCGACATCGTACCTAATT
66 CATCGACATCATACCTAATT
* * ** * *
51041083 TTGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTTAATTACATGCAAGACCACGTCCGGGA
1 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATTACATATAAGACCATGTCTGGGA
51041148 C
66 C
51041149 GTTGGCATTG
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
85 123 0.93
86 4 0.03
87 5 0.04
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.26
Consensus pattern (85 bp):
TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATTACATATAAGACCATGTCTGGGA
CATCGACATCATACCTAATT
Found at i:51047860 original size:13 final size:13
Alignment explanation
Indices: 51047842--51047875 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
51047832 CCAACCACAT
51047842 GCCCATGTGACTA
1 GCCCATGTGACTA
51047855 GCCCATGTGACTA
1 GCCCATGTGACTA
51047868 GCCCATGT
1 GCCCATGT
51047876 ACCCTTCGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.21, C:0.32, G:0.24, T:0.24
Consensus pattern (13 bp):
GCCCATGTGACTA
Found at i:51049028 original size:7 final size:7
Alignment explanation
Indices: 51049016--51049041 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
51049006 CTCTATCTCA
51049016 TATATTG
1 TATATTG
51049023 TATATTG
1 TATATTG
51049030 TATATTG
1 TATATTG
51049037 TATAT
1 TATAT
51049042 ACACGGTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.58
Consensus pattern (7 bp):
TATATTG
Found at i:51054825 original size:26 final size:26
Alignment explanation
Indices: 51054748--51054858 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
51054738 TTAGTTTACC
* * *
51054748 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCGAA-TACCCTCGATTTGTA
* *
51054775 AAATTACCTAAATATCCTCGATTTGTA
1 AAATTACC-GAATACCCTCGATTTGTA
*
51054802 AAATTACCGAATACCCTC-AGTTTGCA
1 AAATTACCGAATACCCTCGA-TTTGTA
*
51054828 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCG-AATACCCTCGATTTGTA
51054855 AAAT
1 AAAT
51054859 GACTGAAATA
Statistics
Matches: 72, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
25 1 0.01
26 21 0.29
27 46 0.64
28 4 0.06
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.31
Consensus pattern (26 bp):
AAATTACCGAATACCCTCGATTTGTA
Found at i:51054863 original size:27 final size:27
Alignment explanation
Indices: 51054760--51054869 Score: 127
Period size: 27 Copynumber: 4.1 Consensus size: 27
51054750 ATTACCAAAG
* *
51054760 TACCCCCGATTTATAAAATTACCT-AAA
1 TACCCTCGATTTGTAAAATTA-CTGAAA
* *
51054787 TATCCTCGATTTGTAAAATTACCG-AA
1 TACCCTCGATTTGTAAAATTACTGAAA
*
51054813 TACCCTC-AGTTTGCAAAATTACTGAAA
1 TACCCTCGA-TTTGTAAAATTACTGAAA
*
51054840 TACCCTCGATTTGTAAAATGACTGAAA
1 TACCCTCGATTTGTAAAATTACTGAAA
51054867 TAC
1 TAC
51054870 TCTTGTAAGA
Statistics
Matches: 70, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
25 1 0.01
26 22 0.31
27 46 0.66
28 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACTGAAA
Found at i:51054921 original size:27 final size:27
Alignment explanation
Indices: 51054881--51054968 Score: 140
Period size: 27 Copynumber: 3.3 Consensus size: 27
51054871 CTTGTAAGAT
51054881 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
51054908 AGAATTATCGTTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
51054935 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
51054962 AAAATTA
1 AGAATTA
51054969 TTGAAATACC
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.39
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:51054978 original size:27 final size:27
Alignment explanation
Indices: 51054894--51055006 Score: 102
Period size: 27 Copynumber: 4.2 Consensus size: 27
51054884 ATTACCATTT
* ***
51054894 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTATCGAAA
* * * **
51054921 TACCCTCGATTTATAGAATTA-CCATTT
1 TACCCTCGATTTACAAAATTATCGA-AA
*
51054948 TACCCTCGATTTACAAAATTATTGAAA
1 TACCCTCGATTTACAAAATTATCGAAA
* *
51054975 TACCCTTGGTTTACAAAATTATCGAAA
1 TACCCTCGATTTACAAAATTATCGAAA
51055002 TACCC
1 TACCC
51055007 CTGTAGGGTA
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
26 1 0.01
27 70 0.97
28 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.36
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTATCGAAA
Found at i:51054995 original size:54 final size:54
Alignment explanation
Indices: 51054883--51054995 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
51054873 TGTAAGATAG
* *** * *
51054883 AATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAAAATTATCGAAATACCCTCGATTTACAA
* * *
51054937 AATTACCATTTTACCCTCGATTTACAAAATTATTGAAATACCCTTGGTTTACAA
1 AATTACCATTTTACCCTCGATTTACAAAATTATCGAAATACCCTCGATTTACAA
51054991 AATTA
1 AATTA
51054996 TCGAAATACC
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.33, C:0.20, G:0.08, T:0.39
Consensus pattern (54 bp):
AATTACCATTTTACCCTCGATTTACAAAATTATCGAAATACCCTCGATTTACAA
Found at i:51055021 original size:27 final size:27
Alignment explanation
Indices: 51054991--51055376 Score: 515
Period size: 27 Copynumber: 14.3 Consensus size: 27
51054981 TGGTTTACAA
*
51054991 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
51055018 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
51055045 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
51055072 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
51055099 AATTATC-ACAATACCCCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
51055126 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
51055153 AATTACCGAAATA-CCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
51055179 AATTACCGAAATTCCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
51055206 AATTATCGCAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
51055233 AATTACCAAAATACCTCTATACGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
51055260 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
51055287 AATTATCGCAATACCCCTGTAGGGTTG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
51055314 AATTACCGAAATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
51055341 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
51055368 AATTACCGA
1 AATTACCGA
51055377 GGTGCCTTGT
Statistics
Matches: 312, Mismatches: 44, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
26 24 0.08
27 287 0.92
28 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:51055774 original size:22 final size:22
Alignment explanation
Indices: 51055746--51055804 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
51055736 CCCATTATCG
51055746 ATGGCTTTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
51055768 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
51055790 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
51055805 ACGTATTTAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:51055992 original size:27 final size:26
Alignment explanation
Indices: 51055962--51056069 Score: 135
Period size: 27 Copynumber: 4.0 Consensus size: 26
51055952 ATTCTGTTAA
*
51055962 GTGGCTTTGCCACATTATCTGATTCTG
1 GTGGCTTTGCCACAATATCTG-TTCTG
* *
51055989 GTGGCTATGCCACAAATATTTGTTCTG
1 GTGGCTTTGCCAC-AATATCTGTTCTG
51056016 GTGGCTTTGCCACAATATCTGTATCTG
1 GTGGCTTTGCCACAATATCTGT-TCTG
* * *
51056043 GTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTTTGCCACAATATCTGTTCTG
51056069 G
1 G
51056070 CAACCATGCA
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
26 13 0.18
27 52 0.73
28 6 0.08
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.38
Consensus pattern (26 bp):
GTGGCTTTGCCACAATATCTGTTCTG
Found at i:51056220 original size:6 final size:6
Alignment explanation
Indices: 51056189--51056268 Score: 65
Period size: 6 Copynumber: 13.0 Consensus size: 6
51056179 TTATATTCAC
* * *
51056189 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTC-G
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
51056237 GTTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
51056269 TCACCTAATT
Statistics
Matches: 58, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
5 5 0.09
6 46 0.79
7 4 0.07
8 3 0.05
ACGTcount: A:0.19, C:0.16, G:0.17, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:51056224 original size:31 final size:31
Alignment explanation
Indices: 51056189--51056274 Score: 145
Period size: 31 Copynumber: 2.8 Consensus size: 31
51056179 TTATATTCAC
51056189 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
51056220 ATTCTGATTTTGATTCGGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* *
51056251 ATTCTGATTCTGATTCTGTCACCT
1 ATTCTGATTTTGATTCTGTTACCT
51056275 AATTCTAATT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 51 1.00
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.47
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:51056286 original size:31 final size:31
Alignment explanation
Indices: 51056189--51056292 Score: 136
Period size: 31 Copynumber: 3.4 Consensus size: 31
51056179 TTATATTCAC
*
51056189 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* *
51056220 ATTCTGATTTTGATTCGGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * * *
51056251 ATTCTGATTCTGATTCTGTCACCTAATTCTA
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
*
51056282 ATTCTAATTCT
1 ATTCTGATTCT
51056293 AGTTCTGATA
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 65 1.00
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:51058429 original size:27 final size:26
Alignment explanation
Indices: 51058397--51058507 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
51058387 TTAGTTTACC
* *
51058397 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAA-TACCCTCGATTTGTA
*
51058424 AAATTACCTAAATATCCTCGATTTGTA
1 AAATTACC-AAATACCCTCGATTTGTA
*
51058451 AAATTACCGAATACCCTC-AGTTTGTA
1 AAATTACCAAATACCCTCGA-TTTGTA
*
51058477 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTAC-CAAATACCCTCGATTTGTA
51058504 AAAT
1 AAAT
51058508 GACTGAAATA
Statistics
Matches: 73, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
25 1 0.01
26 21 0.29
27 47 0.64
28 4 0.05
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.32
Consensus pattern (26 bp):
AAATTACCAAATACCCTCGATTTGTA
Found at i:51058512 original size:27 final size:27
Alignment explanation
Indices: 51058409--51058518 Score: 136
Period size: 27 Copynumber: 4.1 Consensus size: 27
51058399 ATTACCAAAG
* *
51058409 TACCCCCGATTTATAAAATTACCT-AAA
1 TACCCTCGATTTGTAAAATTA-CTGAAA
* *
51058436 TATCCTCGATTTGTAAAATTACCG-AA
1 TACCCTCGATTTGTAAAATTACTGAAA
51058462 TACCCTC-AGTTTGTAAAATTACTGAAA
1 TACCCTCGA-TTTGTAAAATTACTGAAA
*
51058489 TACCCTCGATTTGTAAAATGACTGAAA
1 TACCCTCGATTTGTAAAATTACTGAAA
51058516 TAC
1 TAC
51058519 TCTTGTAAGA
Statistics
Matches: 72, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
25 1 0.01
26 23 0.32
27 47 0.65
28 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.32
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACTGAAA
Found at i:51058570 original size:27 final size:27
Alignment explanation
Indices: 51058530--51058617 Score: 149
Period size: 27 Copynumber: 3.3 Consensus size: 27
51058520 CTTGTAAGAT
51058530 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
51058557 AGAATTACCGTTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
51058584 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
51058611 AAAATTA
1 AGAATTA
51058618 TTGAAATACC
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.38
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:51058627 original size:27 final size:27
Alignment explanation
Indices: 51058543--51058655 Score: 93
Period size: 27 Copynumber: 4.2 Consensus size: 27
51058533 ATTACCATTT
* * ***
51058543 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTATCGAAA
* * * **
51058570 TACCCTCGATTTATAGAATTA-CCATTT
1 TACCCTCGATTTACAAAATTATCGA-AA
*
51058597 TACCCTCGATTTACAAAATTATTGAAA
1 TACCCTCGATTTACAAAATTATCGAAA
* *
51058624 TACCCTTGGTTTACAAAATTATCGAAA
1 TACCCTCGATTTACAAAATTATCGAAA
51058651 TACCC
1 TACCC
51058656 CTGTAGGGTA
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
26 1 0.01
27 70 0.97
28 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.09, T:0.35
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTATCGAAA
Found at i:51058644 original size:54 final size:54
Alignment explanation
Indices: 51058532--51058644 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 54
51058522 TGTAAGATAG
* *** * *
51058532 AATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAAAATTACCGAAATACCCTCGATTTACAA
** * *
51058586 AATTACCATTTTACCCTCGATTTACAAAATTATTGAAATACCCTTGGTTTACAA
1 AATTACCATTTTACCCTCGATTTACAAAATTACCGAAATACCCTCGATTTACAA
51058640 AATTA
1 AATTA
51058645 TCGAAATACC
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (54 bp):
AATTACCATTTTACCCTCGATTTACAAAATTACCGAAATACCCTCGATTTACAA
Found at i:51058670 original size:27 final size:27
Alignment explanation
Indices: 51058640--51059025 Score: 506
Period size: 27 Copynumber: 14.3 Consensus size: 27
51058630 TGGTTTACAA
*
51058640 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
51058667 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
51058694 AATTACCGAAATA-CCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
51058720 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
51058747 AATTATC-ACAATACCCCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
51058774 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
51058801 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
51058828 AATTACCGAAATTCCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
51058855 AATTATCGCAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
51058882 AATTACCAAAATACCTCTATACGGTAT
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
51058909 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
51058936 AATTATCGCAATACCCCTGTAGGGTTG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
51058963 AATTACCGAAATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
51058990 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
51059017 AATTACCGA
1 AATTACCGA
51059026 GGTGCCTTGT
Statistics
Matches: 310, Mismatches: 46, Indels: 6
0.86 0.13 0.02
Matches are distributed among these distances:
26 24 0.08
27 285 0.92
28 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:51059423 original size:22 final size:22
Alignment explanation
Indices: 51059395--51059453 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
51059385 CCCGTTATCG
51059395 ATGGCTTTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
51059417 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
51059439 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
51059454 ACGTATTTAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:51059641 original size:27 final size:26
Alignment explanation
Indices: 51059611--51059718 Score: 108
Period size: 27 Copynumber: 4.0 Consensus size: 26
51059601 ATTCTGTTAA
*
51059611 GTGGCTTTGCCACATTACCTGATTCTG
1 GTGGCTTTGCCACAATACCTG-TTCTG
* **
51059638 GTGGCTATGCCACAAATATTTGTTCTG
1 GTGGCTTTGCCAC-AATACCTGTTCTG
*
51059665 GTGGCTTTGCCACAATATCTGTATCTG
1 GTGGCTTTGCCACAATACCTGT-TCTG
* * * *
51059692 GTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTTTGCCACAATACCTGTTCTG
51059718 G
1 G
51059719 CAACCATGCA
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 13 0.19
27 52 0.74
28 5 0.07
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTGGCTTTGCCACAATACCTGTTCTG
Found at i:51059669 original size:54 final size:53
Alignment explanation
Indices: 51059611--51059718 Score: 137
Period size: 54 Copynumber: 2.0 Consensus size: 53
51059601 ATTCTGTTAA
* * *
51059611 GTGGCTTTGCCACATTACCTG-ATTCTGGTGGCTATGCCACAAATATTTGTTCTG
1 GTGGCTTTGCCACAATACCTGTA-TCTGGTGACTATGCCAC-AATATCTGTTCTG
* * *
51059665 GTGGCTTTGCCACAATATCTGTATCTGGTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTTTGCCACAATACCTGTATCTGGTGACTATGCCACAATATCTGTTCTG
51059718 G
1 G
51059719 CAACCATGCA
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
53 13 0.28
54 33 0.70
55 1 0.02
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (53 bp):
GTGGCTTTGCCACAATACCTGTATCTGGTGACTATGCCACAATATCTGTTCTG
Found at i:51059873 original size:31 final size:31
Alignment explanation
Indices: 51059838--51059935 Score: 142
Period size: 31 Copynumber: 3.2 Consensus size: 31
51059828 TTATATTCAC
*
51059838 ATTCTGATTTTGATTATGTTACCTAATACTG
1 ATTCTGATTTTGATTCTGTTACCTAATACTG
*
51059869 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTAATACTG
* * * *
51059900 ATTCTGATTCTGATTCTGTCACCTAATTCTA
1 ATTCTGATTTTGATTCTGTTACCTAATACTG
51059931 ATTCT
1 ATTCT
51059936 AATTCTAGTT
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 60 1.00
ACGTcount: A:0.22, C:0.17, G:0.12, T:0.48
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTAATACTG
Found at i:51059877 original size:6 final size:6
Alignment explanation
Indices: 51059866--51059917 Score: 61
Period size: 6 Copynumber: 8.5 Consensus size: 6
51059856 TTACCTAATA
* *
51059866 CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT CTGATT
51059915 CTG
1 CTG
51059918 TCACCTAATT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 2 0.05
6 33 0.85
7 3 0.08
8 1 0.03
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:51062121 original size:26 final size:26
Alignment explanation
Indices: 51062044--51062154 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
51062034 TTAGTTTACC
* *
51062044 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAA-TACCCTCGATTTGTA
*
51062071 AAATTACCTAAATATCCTCGATTTGTA
1 AAATTACC-AAATACCCTCGATTTGTA
*
51062098 AAATTACCAAATACCCTC-AGTTTGCA
1 AAATTACCAAATACCCTCGA-TTTGTA
*
51062124 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTAC-CAAATACCCTCGATTTGTA
51062151 AAAT
1 AAAT
51062155 GACTGAAATA
Statistics
Matches: 73, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
25 1 0.01
26 21 0.29
27 47 0.64
28 4 0.05
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.31
Consensus pattern (26 bp):
AAATTACCAAATACCCTCGATTTGTA
Done.